mm10_v2_chr9_+_15239045_15239155	11.4723	Hoxa1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr7_+_73391160_73391296	7.97258	Hoxa1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr15_-_95528702_95528777	6.48648	Hoxa1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr2_+_158375638_158375721	6.31636	Hoxa1	ENSMUST00000109488.1|Snhg11|ENSMUSG00000044349.9|small nucleolar RNA host gene 11
mm10_v2_chr14_+_70077375_70077445	5.53087	Hoxa1	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr2_+_163225363_163225469	4.89849	Hoxa1	ENSMUST00000099110.3|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2 	ENSMUST00000165937.1|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2
mm10_v2_chr4_-_143299498_143299564	4.35669	Hoxa1	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr3_+_55782500_55782521	4.06342	Hoxa1	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr17_+_70522083_70522145	3.84242	Hoxa1	ENSMUST00000148486.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1 	ENSMUST00000133717.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr10_+_81628702_81628719	3.522	Hoxa1	ENSMUST00000129622.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr17_+_70522149_70522169	3.41644	Hoxa1	ENSMUST00000140728.1|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr5_+_27261916_27261980	3.29378	Hoxa1	ENSMUST00000101471.3|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr2_+_65845767_65845799	3.25421	Hoxa1	ENSMUST00000122912.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr2_+_65845833_65845850	3.23384	Hoxa1	ENSMUST00000053910.3|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr14_+_66344369_66344380	3.14231	Hoxa1	ENSMUST00000118426.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000121955.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000120229.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000134440.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr14_-_103844173_103844198	3.06869	Hoxa1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr15_+_98167806_98167873	3.06541	Hoxa1	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr8_-_117673682_117673701	3.01659	Hoxa1	ENSMUST00000173522.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1 	ENSMUST00000174450.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1
mm10_v2_chr15_+_74516196_74516219	3.00066	Hoxa1	ENSMUST00000042035.9|Bai1|ENSMUSG00000034730.10|brain-specific angiogenesis inhibitor 1
mm10_v2_chr4_-_35845204_35845204	2.94734	Hoxa1	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr2_+_90885860_90885872	2.93283	Hoxa1	ENSMUST00000111466.2|C1qtnf4|ENSMUSG00000040794.5|C1q and tumor necrosis factor related protein 4
mm10_v2_chr14_+_66344296_66344316	2.92019	Hoxa1	ENSMUST00000152093.1|Stmn4|ENSMUSG00000022044.8|stathmin-like 4 	ENSMUST00000074523.6|Stmn4|ENSMUSG00000022044.8|stathmin-like 4
mm10_v2_chr8_-_11312731_11312826	2.79679	Hoxa1	ENSMUST00000033898.9|Col4a1|ENSMUSG00000031502.9|collagen, type IV, alpha 1
mm10_v2_chr10_+_79988584_79988683	2.74357	Hoxa1	ENSMUST00000004784.4|Cnn2|ENSMUSG00000004665.4|calponin 2 	ENSMUST00000105374.1|Cnn2|ENSMUSG00000004665.4|calponin 2
mm10_v2_chr5_-_135573036_135573051	2.62096	Hoxa1	ENSMUST00000004936.6|Ccl24|ENSMUSG00000004814.7|chemokine (C-C motif) ligand 24
mm10_v2_chr10_+_26078255_26078255	2.51759	Hoxa1	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr9_-_4796218_4796267	2.45598	Hoxa1	ENSMUST00000027020.6|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000063508.7|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4) 	ENSMUST00000163309.1|Gria4|ENSMUSG00000025892.9|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm10_v2_chr17_+_55445375_55445389	2.41094	Hoxa1	ENSMUST00000133899.1|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2 	ENSMUST00000086878.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr5_+_137030275_137030295	2.28244	Hoxa1	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chr2_+_152962485_152962510	2.14667	Hoxa1	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr9_-_21312255_21312333	2.12093	Hoxa1	ENSMUST00000115433.3|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit 	ENSMUST00000003397.7|Ap1m2|ENSMUSG00000003309.7|adaptor protein complex AP-1, mu 2 subunit
mm10_v2_chr11_+_103774150_103774193	2.08336	Hoxa1	ENSMUST00000000127.5|Wnt3|ENSMUSG00000000125.5|wingless-related MMTV integration site 3
mm10_v2_chr15_+_82252397_82252475	2.0367	Hoxa1	ENSMUST00000136948.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr4_-_143299463_143299482	1.99983	Hoxa1	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr13_+_31806627_31806650	1.90257	Hoxa1	ENSMUST00000062292.2|Foxc1|ENSMUSG00000050295.2|forkhead box C1
mm10_v2_chr1_+_153665274_153665325	1.89437	Hoxa1	ENSMUST00000152114.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111812.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr11_-_102296618_102296681	1.76313	Hoxa1	ENSMUST00000107132.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3 	ENSMUST00000073234.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3
mm10_v2_chr9_+_59589288_59589353	1.75003	Hoxa1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr10_+_81628570_81628635	1.70398	Hoxa1	ENSMUST00000153573.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24 	ENSMUST00000119336.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr7_-_30534180_30534180	1.68995	Hoxa1	ENSMUST00000044338.4|Arhgap33|ENSMUSG00000036882.6|Rho GTPase activating protein 33
mm10_v2_chr6_-_136875794_136875811	1.68453	Hoxa1	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr3_+_68572245_68572392	1.62997	Hoxa1	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr19_-_41743665_41743706	1.60368	Hoxa1	ENSMUST00000025993.3|Slit1|ENSMUSG00000025020.5|slit homolog 1 (Drosophila)
mm10_v2_chr5_-_137684665_137684729	1.57024	Hoxa1	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr6_-_52012476_52012551	1.55757	Hoxa1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr11_-_40755201_40755311	1.46456	Hoxa1	ENSMUST00000020576.7|Ccng1|ENSMUSG00000020326.7|cyclin G1
mm10_v2_chr13_-_60177357_60177373	1.46322	Hoxa1	ENSMUST00000065086.4|Gas1|ENSMUSG00000052957.7|growth arrest specific 1
mm10_v2_chr2_-_26246707_26246707	1.41519	Hoxa1	ENSMUST00000166349.1|C030048H21Rik|ENSMUSG00000090340.1|RIKEN cDNA C030048H21 gene
mm10_v2_chr1_+_89454769_89454885	1.35706	Hoxa1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr10_+_14523062_14523065	1.28211	Hoxa1	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr10_+_81628540_81628567	1.25461	Hoxa1	ENSMUST00000123896.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr7_-_16917184_16917212	1.24721	Hoxa1	ENSMUST00000173139.1|Calm3|ENSMUSG00000019370.10|calmodulin 3
mm10_v2_chr4_-_106799779_106799846	1.23393	Hoxa1	ENSMUST00000145061.1|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11 	ENSMUST00000102762.3|Acot11|ENSMUSG00000034853.10|acyl-CoA thioesterase 11
mm10_v2_chr13_+_72628802_72628825	1.18152	Hoxa1	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr5_+_88583527_88583590	1.07857	Hoxa1	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr2_+_165595009_165595080	1.05335	Hoxa1	ENSMUST00000088132.6|Eya2|ENSMUSG00000017897.12|eyes absent 2 homolog (Drosophila)
mm10_v2_chr11_-_20332654_20332688	1.04581	Hoxa1	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr4_+_101507855_101507871	1.0269	Hoxa1	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr4_+_119814495_119814526	1.01517	Hoxa1	ENSMUST00000106307.2|Hivep3|ENSMUSG00000028634.10|human immunodeficiency virus type I enhancer binding protein 3
mm10_v2_chr2_-_152951688_152951700	1.00978	Hoxa1	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr4_+_101507947_101508032	1.00604	Hoxa1	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr17_-_90455872_90456026	0.945136	Hoxa1	ENSMUST00000174337.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000172466.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr3_-_89093358_89093367	0.891244	Hoxa1	ENSMUST00000090929.5|Rusc1|ENSMUSG00000041263.8|RUN and SH3 domain containing 1 	ENSMUST00000052539.6|Rusc1|ENSMUSG00000041263.8|RUN and SH3 domain containing 1
mm10_v2_chr2_+_36230426_36230491	0.856188	Hoxa1	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chrX_+_38600626_38600691	0.800258	Hoxa1	ENSMUST00000000365.2|Mcts1|ENSMUSG00000000355.7|malignant T cell amplified sequence 1
mm10_v2_chr18_+_56562443_56562593	0.785862	Hoxa1	ENSMUST00000130163.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export 	ENSMUST00000132628.1|Phax|ENSMUSG00000008301.5|phosphorylated adaptor for RNA export
mm10_v2_chr3_-_110143937_110144011	0.772272	Hoxa1	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chrX_-_150812932_150813154	0.769096	Hoxa1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr10_+_94576254_94576270	0.753396	Hoxa1	ENSMUST00000117929.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr16_+_23107413_23107479	0.747523	Hoxa1	ENSMUST00000023599.6|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000168891.1|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr2_+_112261926_112261951	0.732814	Hoxa1	ENSMUST00000028553.3|Nop10|ENSMUSG00000027133.3|NOP10 ribonucleoprotein
mm10_v2_chr16_-_18876655_18876767	0.730792	Hoxa1	ENSMUST00000023391.8|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr8_+_95825353_95825354	0.61065	Hoxa1	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr7_+_144838590_144838614	0.588858	Hoxa1	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chrX_-_8132770_8132857	0.579377	Hoxa1	ENSMUST00000130832.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000033506.6|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000115623.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000153839.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13
mm10_v2_chr18_+_4994600_4994623	0.55005	Hoxa1	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr14_-_69503316_69503362	0.543122	Hoxa1	ENSMUST00000179116.2|Gm21464|ENSMUSG00000093954.2|predicted gene, 21464
mm10_v2_chr8_-_67515606_67515606	0.513037	Hoxa1	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr10_-_63421739_63421739	0.46538	Hoxa1	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chrX_-_150813637_150813712	0.442858	Hoxa1	ENSMUST00000112700.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr17_-_28622419_28622473	0.37111	Hoxa1	ENSMUST00000114767.1|Srpk1|ENSMUSG00000004865.9|serine/arginine-rich protein specific kinase 1
mm10_v2_chr13_+_72628831_72628971	0.36173	Hoxa1	ENSMUST00000169028.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr4_-_108406676_108406745	0.346085	Hoxa1	ENSMUST00000184609.1|Gpx7|ENSMUSG00000028597.11|glutathione peroxidase 7
mm10_v2_chr16_-_18876522_18876570	0.309728	Hoxa1	ENSMUST00000119273.1|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr9_+_110344185_110344204	0.285038	Hoxa1	ENSMUST00000142100.1|Scap|ENSMUSG00000032485.8|SREBF chaperone
mm10_v2_chr15_-_53346118_53346169	0.280122	Hoxa1	ENSMUST00000077273.2|Ext1|ENSMUSG00000061731.3|exostoses (multiple) 1
mm10_v2_chr11_+_24080664_24080706	0.172214	Hoxa1	ENSMUST00000118955.1|Bcl11a|ENSMUSG00000000861.9|B cell CLL/lymphoma 11A (zinc finger protein)
mm10_v2_chr6_+_91684061_91684132	0.170642	Hoxa1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr10_+_90071095_90071117	0.170231	Hoxa1	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr2_-_131042682_131042682	0.137282	Hoxa1	ENSMUST00000028787.5|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110239.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110234.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4
mm10_v2_chr12_-_80260356_80260371	0.129858	Hoxa1	ENSMUST00000021554.8|Actn1|ENSMUSG00000015143.8|actinin, alpha 1
mm10_v2_chrX_+_110814390_110814413	0.0881393	Hoxa1	ENSMUST00000078229.3|Pou3f4|ENSMUSG00000056854.3|POU domain, class 3, transcription factor 4
mm10_v2_chr5_+_135369942_135369997	0.0609846	Hoxa1	ENSMUST00000000940.8|Nsun5|ENSMUSG00000000916.9|NOL1/NOP2/Sun domain family, member 5
mm10_v2_chr11_+_62281457_62281495	0.0315411	Hoxa1	ENSMUST00000101075.4|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19 	ENSMUST00000050646.6|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19
mm10_v2_chr12_+_53248677_53248677	0.0294818	Hoxa1	ENSMUST00000101432.2|Npas3|ENSMUSG00000021010.7|neuronal PAS domain protein 3
mm10_v2_chr13_-_12340723_12340760	0.0227318	Hoxa1	ENSMUST00000168193.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000110616.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000064204.7|Actn2|ENSMUSG00000052374.8|actinin alpha 2
mm10_v2_chr7_+_3694512_3694552	0.0216016	Hoxa1	ENSMUST00000108627.3|Tsen34|ENSMUSG00000035585.10|tRNA splicing endonuclease 34 homolog (S. cerevisiae)
