mm10_v2_chr13_+_16014457_16014475	10.7354	Hoxa11_Hoxc12	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr1_-_56978534_56978650	10.6939	Hoxa11_Hoxc12	ENSMUST00000177282.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr6_+_108213086_108213123	8.16102	Hoxa11_Hoxc12	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr17_+_35076902_35077073	7.34919	Hoxa11_Hoxc12	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr1_+_43730593_43730633	5.48998	Hoxa11_Hoxc12	ENSMUST00000027217.8|1500015O10Rik|ENSMUSG00000026051.8|RIKEN cDNA 1500015O10 gene
mm10_v2_chr9_+_53771499_53771535	5.403	Hoxa11_Hoxc12	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr3_-_117360876_117360876	5.38844	Hoxa11_Hoxc12	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr16_-_57231434_57231509	4.39713	Hoxa11_Hoxc12	ENSMUST00000023431.6|Tbc1d23|ENSMUSG00000022749.6|TBC1 domain family, member 23
mm10_v2_chr14_+_80000292_80000309	4.34034	Hoxa11_Hoxc12	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr17_+_6270475_6270475	3.9296	Hoxa11_Hoxc12	ENSMUST00000088940.4|Tmem181a|ENSMUSG00000038141.8|transmembrane protein 181A
mm10_v2_chr5_+_66968961_66969132	3.8814	Hoxa11_Hoxc12	ENSMUST00000132991.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr1_+_178529113_178529134	3.88062	Hoxa11_Hoxc12	ENSMUST00000161017.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr4_+_136143497_136143497	3.81073	Hoxa11_Hoxc12	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr7_-_142661858_142661880	3.6819	Hoxa11_Hoxc12	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr15_-_101850778_101850792	3.14774	Hoxa11_Hoxc12	ENSMUST00000023790.3|Krt1|ENSMUSG00000046834.6|keratin 1
mm10_v2_chrX_+_73064787_73064787	3.12181	Hoxa11_Hoxc12	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr12_-_23780265_23780265	2.86677	Hoxa11_Hoxc12	ENSMUST00000072014.4|Gm10330|ENSMUSG00000071362.2|predicted gene 10330
mm10_v2_chr16_-_45408955_45409053	2.8658	Hoxa11_Hoxc12	ENSMUST00000163230.1|Cd200|ENSMUSG00000022661.8|CD200 antigen
mm10_v2_chr11_-_30986326_30986372	2.73969	Hoxa11_Hoxc12	ENSMUST00000020553.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2 	ENSMUST00000101394.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2
mm10_v2_chr15_-_43869993_43870058	2.57122	Hoxa11_Hoxc12	ENSMUST00000067469.4|Tmem74|ENSMUSG00000054409.4|transmembrane protein 74
mm10_v2_chr1_-_189922338_189922363	2.53504	Hoxa11_Hoxc12	ENSMUST00000027897.7|Smyd2|ENSMUSG00000026603.7|SET and MYND domain containing 2
mm10_v2_chr6_+_96115249_96115311	2.51634	Hoxa11_Hoxc12	ENSMUST00000075080.5|Fam19a1|ENSMUSG00000059187.6|family with sequence similarity 19, member A1
mm10_v2_chr11_-_115628260_115628298	2.48571	Hoxa11_Hoxc12	ENSMUST00000178003.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr11_-_115627948_115628122	2.47326	Hoxa11_Hoxc12	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr14_+_27622433_27622543	2.35573	Hoxa11_Hoxc12	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chr11_-_115628125_115628164	2.28604	Hoxa11_Hoxc12	ENSMUST00000155709.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000021089.4|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr17_-_6477102_6477102	2.16499	Hoxa11_Hoxc12	ENSMUST00000167717.2|Tmem181b-ps|ENSMUSG00000079733.3|transmembrane protein 181B, pseudogene
mm10_v2_chr17_+_8283762_8283852	2.09634	Hoxa11_Hoxc12	ENSMUST00000155364.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000046754.8|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000124023.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1
mm10_v2_chr18_+_69346143_69346203	1.98451	Hoxa11_Hoxc12	ENSMUST00000114980.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr3_+_129532386_129532440	1.95426	Hoxa11_Hoxc12	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr9_-_55919605_55919605	1.94679	Hoxa11_Hoxc12	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr8_+_25720054_25720099	1.93662	Hoxa11_Hoxc12	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr4_+_130913120_130913137	1.92405	Hoxa11_Hoxc12	ENSMUST00000151698.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5
mm10_v2_chrX_+_41401304_41401427	1.91765	Hoxa11_Hoxc12	ENSMUST00000076349.5|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr14_+_49172202_49172254	1.9032	Hoxa11_Hoxc12	ENSMUST00000153488.1|Naa30|ENSMUSG00000036282.8|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm10_v2_chr4_+_130913264_130913358	1.85998	Hoxa11_Hoxc12	ENSMUST00000156225.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5 	ENSMUST00000156742.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5
mm10_v2_chr10_-_67912620_67912685	1.75053	Hoxa11_Hoxc12	ENSMUST00000064656.7|Zfp365|ENSMUSG00000037855.9|zinc finger protein 365
mm10_v2_chrX_+_41401128_41401200	1.74493	Hoxa11_Hoxc12	ENSMUST00000115103.2|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr12_-_27160311_27160476	1.74484	Hoxa11_Hoxc12	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr11_+_82045705_82045721	1.71774	Hoxa11_Hoxc12	ENSMUST00000021011.2|Ccl7|ENSMUSG00000035373.2|chemokine (C-C motif) ligand 7
mm10_v2_chr18_-_43393346_43393381	1.65697	Hoxa11_Hoxc12	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr13_+_109685994_109686156	1.60268	Hoxa11_Hoxc12	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr5_-_20951769_20951824	1.46131	Hoxa11_Hoxc12	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr11_-_95309557_95309602	1.44254	Hoxa11_Hoxc12	ENSMUST00000092766.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7 	ENSMUST00000072621.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7
mm10_v2_chr16_-_74411776_74411792	1.41218	Hoxa11_Hoxc12	ENSMUST00000116586.2|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr12_+_78226627_78226655	1.38471	Hoxa11_Hoxc12	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr16_+_75592844_75592928	1.37324	Hoxa11_Hoxc12	ENSMUST00000114249.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000046378.7|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000114253.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11
mm10_v2_chr6_-_55681257_55681271	1.35988	Hoxa11_Hoxc12	ENSMUST00000044767.8|Neurod6|ENSMUSG00000037984.8|neurogenic differentiation 6
mm10_v2_chr11_-_62457772_62457835	1.34533	Hoxa11_Hoxc12	ENSMUST00000127471.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr13_-_54749849_54749893	1.30391	Hoxa11_Hoxc12	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr4_+_108328136_108328180	1.26423	Hoxa11_Hoxc12	ENSMUST00000131656.1|Selrc1|ENSMUSG00000048351.8|Sel1 repeat containing 1
mm10_v2_chr5_-_123666682_123666695	1.21436	Hoxa11_Hoxc12	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr5_+_32611171_32611245	1.19013	Hoxa11_Hoxc12	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr6_+_91878034_91878089	1.15971	Hoxa11_Hoxc12	ENSMUST00000037783.5|Ccdc174|ENSMUSG00000034083.10|coiled-coil domain containing 174
mm10_v2_chr8_+_104250925_104250940	1.12532	Hoxa11_Hoxc12	ENSMUST00000098464.4|Cklf|ENSMUSG00000054400.9|chemokine-like factor
mm10_v2_chr17_+_22361453_22361522	1.04163	Hoxa11_Hoxc12	ENSMUST00000149699.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000088765.2|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000072477.4|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000121315.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758
mm10_v2_chr18_+_37655891_37655915	1.03994	Hoxa11_Hoxc12	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr6_+_40325471_40325501	1.03011	Hoxa11_Hoxc12	ENSMUST00000031977.8|Agk|ENSMUSG00000029916.8|acylglycerol kinase
mm10_v2_chr12_-_20900867_20900867	1.0213	Hoxa11_Hoxc12	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr12_+_59066908_59066931	1.01344	Hoxa11_Hoxc12	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr4_+_102741287_102741298	0.96424	Hoxa11_Hoxc12	ENSMUST00000097948.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr7_+_4460687_4460730	0.948442	Hoxa11_Hoxc12	ENSMUST00000167298.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1 	ENSMUST00000171445.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1
mm10_v2_chr2_+_166805506_166805605	0.930843	Hoxa11_Hoxc12	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr2_+_23068168_23068241	0.880712	Hoxa11_Hoxc12	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr6_-_29216301_29216364	0.879162	Hoxa11_Hoxc12	ENSMUST00000162739.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000162099.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000159124.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr10_+_90071095_90071117	0.86739	Hoxa11_Hoxc12	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr6_-_29216277_29216292	0.866308	Hoxa11_Hoxc12	ENSMUST00000162215.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr6_-_118455475_118455528	0.854097	Hoxa11_Hoxc12	ENSMUST00000161519.1|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248 	ENSMUST00000069292.7|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248
mm10_v2_chr1_-_93101825_93101849	0.840413	Hoxa11_Hoxc12	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr7_-_73537621_73537766	0.839739	Hoxa11_Hoxc12	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr2_-_120970706_120970761	0.803523	Hoxa11_Hoxc12	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr13_-_12464925_12464949	0.772045	Hoxa11_Hoxc12	ENSMUST00000124888.1|Lgals8|ENSMUSG00000057554.7|lectin, galactose binding, soluble 8
mm10_v2_chrX_+_20364481_20364616	0.755179	Hoxa11_Hoxc12	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr13_-_66851513_66851513	0.73864	Hoxa11_Hoxc12	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr18_+_37333853_37333946	0.708274	Hoxa11_Hoxc12	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr8_+_40307458_40307458	0.662637	Hoxa11_Hoxc12	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr5_-_143292356_143292356	0.661096	Hoxa11_Hoxc12	ENSMUST00000180336.1|Zfp853|ENSMUSG00000093910.1|zinc finger protein 853
mm10_v2_chr3_+_145576196_145576266	0.640282	Hoxa11_Hoxc12	ENSMUST00000098534.4|Znhit6|ENSMUSG00000074182.4|zinc finger, HIT type 6
mm10_v2_chr18_-_38209762_38209786	0.627046	Hoxa11_Hoxc12	ENSMUST00000057185.6|Pcdh1|ENSMUSG00000051375.9|protocadherin 1
mm10_v2_chr13_-_99344652_99344706	0.603489	Hoxa11_Hoxc12	ENSMUST00000022153.6|Ptcd2|ENSMUSG00000021650.6|pentatricopeptide repeat domain 2
mm10_v2_chr11_+_75732869_75732975	0.590692	Hoxa11_Hoxc12	ENSMUST00000067664.3|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr19_-_7483212_7483229	0.565704	Hoxa11_Hoxc12	ENSMUST00000088169.5|Rtn3|ENSMUSG00000024758.8|reticulon 3
mm10_v2_chr17_-_24455265_24455345	0.55564	Hoxa11_Hoxc12	ENSMUST00000056032.7|E4f1|ENSMUSG00000024137.8|E4F transcription factor 1
mm10_v2_chr18_-_46280820_46280850	0.548652	Hoxa11_Hoxc12	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr11_-_72267141_72267222	0.533865	Hoxa11_Hoxc12	ENSMUST00000137701.1|Slc13a5|ENSMUSG00000020805.7|solute carrier family 13 (sodium-dependent citrate transporter), member 5
mm10_v2_chr14_-_104522615_104522707	0.530856	Hoxa11_Hoxc12	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr11_-_62789445_62789478	0.519082	Hoxa11_Hoxc12	ENSMUST00000054654.6|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr2_-_104712122_104712180	0.494133	Hoxa11_Hoxc12	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr8_+_33653238_33653238	0.484943	Hoxa11_Hoxc12	ENSMUST00000033992.8|Gsr|ENSMUSG00000031584.10|glutathione reductase
mm10_v2_chr13_+_98263187_98263221	0.478966	Hoxa11_Hoxc12	ENSMUST00000091356.3|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000123924.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr15_-_77970750_77970824	0.470849	Hoxa11_Hoxc12	ENSMUST00000100484.4|Eif3d|ENSMUSG00000016554.8|eukaryotic translation initiation factor 3, subunit D
mm10_v2_chr17_-_46674255_46674274	0.461952	Hoxa11_Hoxc12	ENSMUST00000024766.6|Rrp36|ENSMUSG00000023971.8|ribosomal RNA processing 36 homolog (S. cerevisiae)
mm10_v2_chr11_-_62789402_62789443	0.440501	Hoxa11_Hoxc12	ENSMUST00000108705.1|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr19_-_46338632_46338670	0.428706	Hoxa11_Hoxc12	ENSMUST00000051234.8|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2 	ENSMUST00000167861.1|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2
mm10_v2_chr13_+_98263242_98263302	0.416414	Hoxa11_Hoxc12	ENSMUST00000022164.8|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000150352.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr16_+_87354185_87354249	0.415764	Hoxa11_Hoxc12	ENSMUST00000054442.4|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118310.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000120284.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118115.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm10_v2_chr7_+_126649297_126649344	0.415102	Hoxa11_Hoxc12	ENSMUST00000032956.8|Ccdc101|ENSMUSG00000030714.8|coiled-coil domain containing 101
mm10_v2_chr8_+_124023394_124023394	0.403597	Hoxa11_Hoxc12	ENSMUST00000034457.8|Urb2|ENSMUSG00000031976.8|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm10_v2_chr13_+_98263105_98263177	0.380266	Hoxa11_Hoxc12	ENSMUST00000150916.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr13_-_66852017_66852017	0.373573	Hoxa11_Hoxc12	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr9_+_75441518_75441575	0.36637	Hoxa11_Hoxc12	ENSMUST00000048937.4|Leo1|ENSMUSG00000042487.5|Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr5_+_3543812_3543853	0.343119	Hoxa11_Hoxc12	ENSMUST00000115527.3|Fam133b|ENSMUSG00000058503.7|family with sequence similarity 133, member B
mm10_v2_chr10_-_120979327_120979373	0.336695	Hoxa11_Hoxc12	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr19_+_4097392_4097415	0.332572	Hoxa11_Hoxc12	ENSMUST00000174514.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2 	ENSMUST00000174149.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2
mm10_v2_chr13_-_98262946_98263020	0.32785	Hoxa11_Hoxc12	ENSMUST00000040972.2|Utp15|ENSMUSG00000041747.2|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm10_v2_chr9_-_14782964_14782964	0.322538	Hoxa11_Hoxc12	ENSMUST00000034406.3|Ankrd49|ENSMUSG00000031931.3|ankyrin repeat domain 49
mm10_v2_chr13_+_58281183_58281196	0.306509	Hoxa11_Hoxc12	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr17_+_8182247_8182247	0.271851	Hoxa11_Hoxc12	ENSMUST00000161898.1|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr6_-_87809757_87809787	0.265188	Hoxa11_Hoxc12	ENSMUST00000032134.7|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr8_+_105225145_105225193	0.239248	Hoxa11_Hoxc12	ENSMUST00000034361.3|D230025D16Rik|ENSMUSG00000031889.3|RIKEN cDNA D230025D16 gene
mm10_v2_chr3_+_32436376_32436376	0.197409	Hoxa11_Hoxc12	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr3_-_88458876_88459043	0.190935	Hoxa11_Hoxc12	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr8_-_69373914_69373914	0.187164	Hoxa11_Hoxc12	ENSMUST00000095282.1|Gm10311|ENSMUSG00000071083.1|predicted gene 10311
mm10_v2_chr11_+_62458414_62458469	0.185761	Hoxa11_Hoxc12	ENSMUST00000014389.5|Pigl|ENSMUSG00000014245.8|phosphatidylinositol glycan anchor biosynthesis, class L
mm10_v2_chr13_+_65512678_65512678	0.184032	Hoxa11_Hoxc12	ENSMUST00000081471.2|Gm10139|ENSMUSG00000063905.2|predicted gene 10139
mm10_v2_chr9_-_75441652_75441652	0.183438	Hoxa11_Hoxc12	ENSMUST00000181896.1|A130057D12Rik|ENSMUSG00000097298.1|RIKEN cDNA A130057D12 gene
mm10_v2_chr8_+_31150307_31150346	0.172913	Hoxa11_Hoxc12	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr4_-_135986917_135987018	0.160331	Hoxa11_Hoxc12	ENSMUST00000123404.1|Pithd1|ENSMUSG00000028669.9|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
mm10_v2_chr3_-_88459047_88459101	0.152349	Hoxa11_Hoxc12	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr6_+_149141513_149141619	0.144254	Hoxa11_Hoxc12	ENSMUST00000047531.9|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000179873.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111548.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111547.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000134306.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr3_+_89177463_89177543	0.124839	Hoxa11_Hoxc12	ENSMUST00000029684.8|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000120697.1|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000098941.4|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3
mm10_v2_chr6_+_149141638_149141663	0.121584	Hoxa11_Hoxc12	ENSMUST00000166416.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20 	ENSMUST00000111551.1|Mettl20|ENSMUSG00000039958.11|methyltransferase like 20
mm10_v2_chr19_-_4012656_4012806	0.0843665	Hoxa11_Hoxc12	ENSMUST00000134479.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000128787.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000133474.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000136921.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000042497.7|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm10_v2_chr14_-_55671873_55671918	0.0752542	Hoxa11_Hoxc12	ENSMUST00000163750.1|Nedd8|ENSMUSG00000010376.8|neural precursor cell expressed, developmentally down-regulated gene 8 	ENSMUST00000010520.8|Nedd8|ENSMUSG00000010376.8|neural precursor cell expressed, developmentally down-regulated gene 8
mm10_v2_chr4_-_135987182_135987269	0.0651495	Hoxa11_Hoxc12	ENSMUST00000105851.2|Pithd1|ENSMUSG00000028669.9|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1
mm10_v2_chrX_+_74270812_74270979	0.0556645	Hoxa11_Hoxc12	ENSMUST00000008826.7|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000151702.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000074085.5|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000135690.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10
mm10_v2_chr5_-_73256555_73256636	0.0441425	Hoxa11_Hoxc12	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr6_+_42286709_42286856	0.0388697	Hoxa11_Hoxc12	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr18_+_36744656_36744737	0.0276939	Hoxa11_Hoxc12	ENSMUST00000007042.5|Ik|ENSMUSG00000024474.5|IK cytokine
mm10_v2_chr6_+_42286676_42286687	0.0193754	Hoxa11_Hoxc12	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr11_+_3963970_3963983	0.0139438	Hoxa11_Hoxc12	ENSMUST00000020705.4|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish) 	ENSMUST00000109985.1|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm10_v2_chr3_+_79885930_79886002	0.00956511	Hoxa11_Hoxc12	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
