mm10_v2_chr2_+_70474923_70474923	3.54145	Hoxc9	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr4_+_144893127_144893151	2.94507	Hoxc9	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr1_-_45503282_45503282	2.73673	Hoxc9	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr16_-_37384915_37384931	2.29106	Hoxc9	ENSMUST00000114787.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114782.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000023526.2|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114775.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr7_-_116038734_116038750	2.26105	Hoxc9	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr1_+_58210397_58210457	2.25689	Hoxc9	ENSMUST00000040442.5|Aox4|ENSMUSG00000038242.6|aldehyde oxidase 4
mm10_v2_chr14_+_80000292_80000309	2.23325	Hoxc9	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr13_+_94083490_94083511	2.20334	Hoxc9	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr4_+_136143497_136143497	2.16172	Hoxc9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr16_-_37384940_37384978	1.94288	Hoxc9	ENSMUST00000114781.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114780.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr4_+_107830958_107830985	1.87471	Hoxc9	ENSMUST00000106731.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr2_+_102658640_102658669	1.75404	Hoxc9	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr2_-_26516620_26516663	1.75386	Hoxc9	ENSMUST00000132820.1|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chr8_-_120228221_120228297	1.67741	Hoxc9	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chr10_-_92162753_92162765	1.52465	Hoxc9	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr6_+_116650674_116650690	1.4494	Hoxc9	ENSMUST00000067354.5|8430408G22Rik|ENSMUSG00000048489.7|RIKEN cDNA 8430408G22 gene 	ENSMUST00000178241.1|8430408G22Rik|ENSMUSG00000048489.7|RIKEN cDNA 8430408G22 gene
mm10_v2_chr17_+_24426676_24426701	1.33992	Hoxc9	ENSMUST00000024946.5|Eci1|ENSMUSG00000024132.5|enoyl-Coenzyme A delta isomerase 1
mm10_v2_chr2_+_91256144_91256170	1.26158	Hoxc9	ENSMUST00000154959.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3 	ENSMUST00000059566.4|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr11_-_80080928_80081001	1.19086	Hoxc9	ENSMUST00000103233.3|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3 	ENSMUST00000061283.8|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3
mm10_v2_chr2_+_4300462_4300522	1.10693	Hoxc9	ENSMUST00000175669.1|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chrX_-_141474034_141474091	1.00205	Hoxc9	ENSMUST00000101205.2|Col4a6|ENSMUSG00000031273.10|collagen, type IV, alpha 6
mm10_v2_chr4_+_100776664_100776692	0.989352	Hoxc9	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr17_-_49564262_49564337	0.932068	Hoxc9	ENSMUST00000057610.6|Daam2|ENSMUSG00000040260.7|dishevelled associated activator of morphogenesis 2
mm10_v2_chr11_+_3330401_3330541	0.896192	Hoxc9	ENSMUST00000045153.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr5_-_44101668_44101745	0.892497	Hoxc9	ENSMUST00000087441.4|Prom1|ENSMUSG00000029086.9|prominin 1 	ENSMUST00000074113.6|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr4_-_91376433_91376477	0.861047	Hoxc9	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr2_+_91255954_91256105	0.842467	Hoxc9	ENSMUST00000134699.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr10_+_5593718_5593739	0.820077	Hoxc9	ENSMUST00000051809.8|Myct1|ENSMUSG00000046916.8|myc target 1
mm10_v2_chr4_-_91376490_91376502	0.815877	Hoxc9	ENSMUST00000107124.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chrX_-_18461371_18461402	0.779006	Hoxc9	ENSMUST00000044188.4|4930578C19Rik|ENSMUSG00000037358.6|RIKEN cDNA 4930578C19 gene
mm10_v2_chr10_-_13324250_13324318	0.729695	Hoxc9	ENSMUST00000105543.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr13_+_113209659_113209772	0.684781	Hoxc9	ENSMUST00000038144.8|Esm1|ENSMUSG00000042379.8|endothelial cell-specific molecule 1
mm10_v2_chr17_-_57000018_57000018	0.684742	Hoxc9	ENSMUST00000002740.2|Pspn|ENSMUSG00000002664.2|persephin
mm10_v2_chr10_-_13324160_13324242	0.67195	Hoxc9	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr9_+_35423582_35423589	0.651919	Hoxc9	ENSMUST00000154652.1|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr19_-_10880370_10880411	0.630943	Hoxc9	ENSMUST00000133303.1|Tmem109|ENSMUSG00000034659.8|transmembrane protein 109
mm10_v2_chr2_-_128967725_128967725	0.614622	Hoxc9	ENSMUST00000099385.2|Gm10762|ENSMUSG00000074807.2|predicted gene 10762
mm10_v2_chr11_-_94242701_94242729	0.605257	Hoxc9	ENSMUST00000061469.3|Wfikkn2|ENSMUSG00000044177.4|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm10_v2_chr4_-_150003130_150003149	0.520059	Hoxc9	ENSMUST00000084117.6|H6pd|ENSMUSG00000028980.8|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm10_v2_chr18_+_65582390_65582613	0.497065	Hoxc9	ENSMUST00000169679.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532 	ENSMUST00000183326.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr2_-_84650490_84650544	0.496168	Hoxc9	ENSMUST00000066177.3|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr2_-_84650714_84650749	0.473581	Hoxc9	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr3_+_66985680_66985692	0.469639	Hoxc9	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr6_-_119388671_119388739	0.452238	Hoxc9	ENSMUST00000169744.1|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr9_-_89705017_89705068	0.447353	Hoxc9	ENSMUST00000058488.6|Tmed3|ENSMUSG00000032353.7|transmembrane emp24 domain containing 3
mm10_v2_chr2_-_84650760_84650771	0.446571	Hoxc9	ENSMUST00000111691.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr2_-_84650676_84650687	0.429649	Hoxc9	ENSMUST00000067232.3|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr18_+_65582281_65582310	0.401467	Hoxc9	ENSMUST00000183319.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr18_+_65582239_65582275	0.363968	Hoxc9	ENSMUST00000182684.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr9_-_7835255_7835255	0.325098	Hoxc9	ENSMUST00000074246.6|Birc2|ENSMUSG00000057367.6|baculoviral IAP repeat-containing 2
mm10_v2_chr2_-_91255995_91256047	0.313491	Hoxc9	ENSMUST00000180732.1|Gm17281|ENSMUSG00000097317.1|predicted gene, 17281
mm10_v2_chr10_-_88605017_88605152	0.29955	Hoxc9	ENSMUST00000119185.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type 	ENSMUST00000121629.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type
mm10_v2_chr13_-_78197815_78197930	0.29267	Hoxc9	ENSMUST00000127137.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr11_-_72215592_72215592	0.157918	Hoxc9	ENSMUST00000021157.8|Med31|ENSMUSG00000020801.8|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm10_v2_chr7_-_139582790_139582808	0.155223	Hoxc9	ENSMUST00000106095.2|Nkx6-2|ENSMUSG00000041309.11|NK6 homeobox 2
mm10_v2_chr3_+_66985647_66985678	0.107483	Hoxc9	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr3_+_66985700_66985740	0.102213	Hoxc9	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr2_+_128967383_128967443	0.0907137	Hoxc9	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr4_+_137594140_137594274	0.0737177	Hoxc9	ENSMUST00000105840.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000055131.6|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000105839.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000105838.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48
mm10_v2_chr10_-_61979073_61979108	0.0713634	Hoxc9	ENSMUST00000105453.1|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1 	ENSMUST00000105452.2|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1 	ENSMUST00000105454.2|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1
mm10_v2_chr2_-_177578199_177578210	0.0267849	Hoxc9	ENSMUST00000108945.1|Gm14406|ENSMUSG00000078865.2|predicted gene 14406 	ENSMUST00000108943.1|Gm14406|ENSMUSG00000078865.2|predicted gene 14406
mm10_v2_chr2_+_175010241_175010319	0.00440015	Hoxc9	ENSMUST00000109069.1|Gm14444|ENSMUSG00000078906.3|predicted gene 14444 	ENSMUST00000109070.2|Gm14444|ENSMUSG00000078906.3|predicted gene 14444
mm10_v2_chr3_+_129199960_129199975	0.00171897	Hoxc9	ENSMUST00000173645.2|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr11_+_85353156_85353219	0.000569205	Hoxc9	ENSMUST00000108061.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108062.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108056.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000138423.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000074875.4|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000092821.3|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3
