mm10_v2_chr9_+_118478182_118478212	14.0093	Lhx4	ENSMUST00000111763.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr9_+_118478344_118478451	13.2351	Lhx4	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr17_-_48432723_48432741	11.5826	Lhx4	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr2_-_160619971_160619971	9.80383	Lhx4	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr14_-_48665098_48665246	8.64712	Lhx4	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr4_-_97778042_97778071	8.5977	Lhx4	ENSMUST00000146447.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr7_-_37773555_37773641	8.4789	Lhx4	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr7_-_37769624_37769677	7.97696	Lhx4	ENSMUST00000175941.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr13_-_97747373_97747384	7.531	Lhx4	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr4_-_45532470_45532470	7.4656	Lhx4	ENSMUST00000147448.1|Shb|ENSMUSG00000044813.9|src homology 2 domain-containing transforming protein B
mm10_v2_chr7_-_37772868_37772891	7.38976	Lhx4	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr13_-_97747399_97747414	7.05967	Lhx4	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr7_-_49636847_49636851	6.6513	Lhx4	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr5_-_28210022_28210034	6.53267	Lhx4	ENSMUST00000118882.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr2_-_28916412_28916440	6.08909	Lhx4	ENSMUST00000050776.2|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila) 	ENSMUST00000113849.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr10_+_79996479_79996505	5.99156	Lhx4	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr2_-_79456750_79456761	5.75999	Lhx4	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr15_+_25752860_25752979	5.54772	Lhx4	ENSMUST00000022882.5|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000135173.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr3_+_55782500_55782521	5.4589	Lhx4	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr18_+_57468478_57468541	5.41346	Lhx4	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chr9_+_120929216_120929251	5.37837	Lhx4	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr17_+_82539258_82539258	4.72527	Lhx4	ENSMUST00000097278.3|Gm6594|ENSMUSG00000073371.3|predicted pseudogene 6594
mm10_v2_chr9_-_96437434_96437434	4.71048	Lhx4	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr16_-_45844228_45844236	4.49267	Lhx4	ENSMUST00000076333.5|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr16_-_45844303_45844381	4.46962	Lhx4	ENSMUST00000036355.6|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr10_+_37139558_37139558	4.46129	Lhx4	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr8_-_61902669_61902713	4.2724	Lhx4	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr4_+_118961578_118961612	4.26328	Lhx4	ENSMUST00000058651.4|Lao1|ENSMUSG00000024903.10|L-amino acid oxidase 1
mm10_v2_chr4_+_97777780_97777834	4.22176	Lhx4	ENSMUST00000107062.2|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000052018.5|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000107057.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr9_-_71896047_71896102	4.17411	Lhx4	ENSMUST00000184448.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr2_-_28916668_28916668	4.16664	Lhx4	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr15_+_31224371_31224400	4.12305	Lhx4	ENSMUST00000044524.9|Dap|ENSMUSG00000039168.9|death-associated protein
mm10_v2_chrX_+_9885622_9885622	4.10738	Lhx4	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr8_+_34807287_34807310	3.88209	Lhx4	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr12_-_84617326_84617466	3.87914	Lhx4	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr1_+_19103022_19103043	3.87474	Lhx4	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr1_-_163289214_163289235	3.83611	Lhx4	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr5_-_62766153_62766246	3.71419	Lhx4	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr9_+_96258697_96258711	3.63202	Lhx4	ENSMUST00000179416.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr6_+_7555053_7555096	3.60997	Lhx4	ENSMUST00000090679.2|Tac1|ENSMUSG00000061762.6|tachykinin 1 	ENSMUST00000184986.1|Tac1|ENSMUSG00000061762.6|tachykinin 1
mm10_v2_chr2_-_33942111_33942151	3.58213	Lhx4	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr1_-_172027269_172027313	3.47353	Lhx4	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr14_+_75455957_75455996	3.46453	Lhx4	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr3_+_41742615_41742725	3.40037	Lhx4	ENSMUST00000146165.1|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000119572.1|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000108065.2|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000120167.1|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000026867.7|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed 	ENSMUST00000026868.7|D3Ertd751e|ENSMUSG00000025766.8|DNA segment, Chr 3, ERATO Doi 751, expressed
mm10_v2_chr19_+_44493472_44493472	3.2289	Lhx4	ENSMUST00000041163.4|Wnt8b|ENSMUSG00000036961.4|wingless related MMTV integration site 8b
mm10_v2_chr17_+_34592248_34592329	3.2289	Lhx4	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr3_-_49757257_49757316	3.1498	Lhx4	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr12_+_38783503_38783527	3.11677	Lhx4	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr4_-_3938354_3938401	2.97513	Lhx4	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr12_+_3954943_3954957	2.77153	Lhx4	ENSMUST00000020990.5|Pomc|ENSMUSG00000020660.5|pro-opiomelanocortin-alpha
mm10_v2_chr7_-_46667375_46667378	2.71631	Lhx4	ENSMUST00000107669.2|Tph1|ENSMUSG00000040046.7|tryptophan hydroxylase 1
mm10_v2_chr7_+_39588931_39588931	2.62898	Lhx4	ENSMUST00000178791.1|Gm2058|ENSMUSG00000074903.4|predicted gene 2058 	ENSMUST00000098511.3|Gm2058|ENSMUSG00000074903.4|predicted gene 2058
mm10_v2_chr8_-_84662841_84662859	2.6279	Lhx4	ENSMUST00000060427.4|Ier2|ENSMUSG00000053560.4|immediate early response 2
mm10_v2_chr1_-_172027251_172027268	2.58516	Lhx4	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr1_-_89933290_89933290	2.56272	Lhx4	ENSMUST00000036954.7|Gbx2|ENSMUSG00000034486.7|gastrulation brain homeobox 2
mm10_v2_chr17_-_36032682_36032855	2.5091	Lhx4	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr2_-_116067391_116067444	2.44251	Lhx4	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr2_-_170194033_170194064	2.40884	Lhx4	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr11_+_58171648_58171688	2.4045	Lhx4	ENSMUST00000020820.1|Mrpl22|ENSMUSG00000020514.2|mitochondrial ribosomal protein L22
mm10_v2_chr5_-_28210168_28210179	2.39543	Lhx4	ENSMUST00000117098.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr2_+_20737306_20737321	2.25282	Lhx4	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr12_+_38783455_38783482	2.23339	Lhx4	ENSMUST00000161980.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160701.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr10_+_75037066_75037100	2.21701	Lhx4	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr3_-_85741389_85741389	2.15391	Lhx4	ENSMUST00000094148.4|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr7_-_73541738_73541758	2.12998	Lhx4	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr19_+_46397009_46397033	2.12036	Lhx4	ENSMUST00000118440.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr16_+_43235856_43235880	2.11653	Lhx4	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_-_82586781_82586849	2.09534	Lhx4	ENSMUST00000087050.5|Col4a4|ENSMUSG00000067158.8|collagen, type IV, alpha 4
mm10_v2_chr14_+_26122609_26122609	2.08781	Lhx4	ENSMUST00000100810.6|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr3_+_76593550_76593550	2.08077	Lhx4	ENSMUST00000162471.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr15_+_34453285_34453312	2.07356	Lhx4	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr1_+_106171752_106171879	2.03989	Lhx4	ENSMUST00000061047.6|Phlpp1|ENSMUSG00000044340.6|PH domain and leucine rich repeat protein phosphatase 1
mm10_v2_chrX_-_102157065_102157096	1.94973	Lhx4	ENSMUST00000056904.2|Ercc6l|ENSMUSG00000051220.2|excision repair cross-complementing rodent repair deficiency complementation group 6 like
mm10_v2_chr19_+_46396885_46397004	1.93158	Lhx4	ENSMUST00000039922.6|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000111867.2|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000120778.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr12_-_27342696_27342726	1.9224	Lhx4	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr16_+_43247278_43247309	1.88315	Lhx4	ENSMUST00000114691.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000079441.6|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr2_+_83724397_83724555	1.87061	Lhx4	ENSMUST00000028499.4|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000141725.1|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000111740.2|Itgav|ENSMUSG00000027087.5|integrin alpha V
mm10_v2_chr2_-_72986716_72986716	1.83702	Lhx4	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr11_+_60537978_60538074	1.81497	Lhx4	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chrX_-_74246364_74246438	1.71737	Lhx4	ENSMUST00000130007.1|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr13_-_83729544_83729584	1.69209	Lhx4	ENSMUST00000181705.1|Gm26803|ENSMUSG00000097265.1|predicted gene, 26803
mm10_v2_chr7_+_140941550_140941615	1.67227	Lhx4	ENSMUST00000079403.4|Athl1|ENSMUSG00000062031.6|ATH1, acid trehalase-like 1 (yeast)
mm10_v2_chr3_-_66296807_66296837	1.65632	Lhx4	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chr4_+_65124174_65124174	1.65439	Lhx4	ENSMUST00000084501.3|Pappa|ENSMUSG00000028370.7|pregnancy-associated plasma protein A
mm10_v2_chr4_-_82505274_82505358	1.61324	Lhx4	ENSMUST00000050872.8|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000064770.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr12_+_59013379_59013398	1.6121	Lhx4	ENSMUST00000021379.7|Gemin2|ENSMUSG00000060121.9|gem (nuclear organelle) associated protein 2
mm10_v2_chr10_-_127189981_127190071	1.60309	Lhx4	ENSMUST00000019611.7|Arhgef25|ENSMUSG00000019467.7|Rho guanine nucleotide exchange factor (GEF) 25
mm10_v2_chr1_+_167598450_167598480	1.47937	Lhx4	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr10_+_23797052_23797200	1.4638	Lhx4	ENSMUST00000133289.1|Slc18b1|ENSMUSG00000037455.10|solute carrier family 18, subfamily B, member 1
mm10_v2_chr4_-_82505707_82505739	1.44165	Lhx4	ENSMUST00000107248.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107247.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr3_-_39359128_39359160	1.40247	Lhx4	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr8_-_21906412_21906437	1.36705	Lhx4	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr10_-_76110956_76110962	1.35222	Lhx4	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr18_+_34758890_34758906	1.34693	Lhx4	ENSMUST00000049281.5|Fam53c|ENSMUSG00000034300.10|family with sequence similarity 53, member C
mm10_v2_chrX_+_16619698_16619758	1.34674	Lhx4	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr4_+_15881255_15881272	1.34575	Lhx4	ENSMUST00000029876.1|Calb1|ENSMUSG00000028222.2|calbindin 1
mm10_v2_chr13_-_89742244_89742334	1.31844	Lhx4	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr9_+_119063429_119063467	1.27207	Lhx4	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr7_+_130774069_130774185	1.2661	Lhx4	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chrX_-_74246534_74246556	1.25296	Lhx4	ENSMUST00000101454.2|Flna|ENSMUSG00000031328.9|filamin, alpha 	ENSMUST00000033699.6|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr1_+_167598384_167598411	1.24931	Lhx4	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr5_+_15516489_15516489	1.22474	Lhx4	ENSMUST00000178227.1|Gm21847|ENSMUSG00000094230.1|predicted gene, 21847
mm10_v2_chr6_-_115037824_115037881	1.20823	Lhx4	ENSMUST00000174848.1|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 	ENSMUST00000032461.5|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)
mm10_v2_chr3_+_32436376_32436376	1.18816	Lhx4	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr9_+_72958785_72958850	1.18656	Lhx4	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr18_-_56975333_56975376	1.17097	Lhx4	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr6_+_40471352_40471526	1.14072	Lhx4	ENSMUST00000114779.2|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000031971.6|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000121360.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117411.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117830.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1
mm10_v2_chr6_+_38381469_38381528	1.13617	Lhx4	ENSMUST00000162554.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26 	ENSMUST00000161751.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26
mm10_v2_chr9_+_64281575_64281630	1.12967	Lhx4	ENSMUST00000034964.6|Tipin|ENSMUSG00000032397.6|timeless interacting protein
mm10_v2_chr4_-_82505749_82505802	1.11935	Lhx4	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr6_+_72097561_72097630	1.11773	Lhx4	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr11_+_59306920_59306935	1.07913	Lhx4	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr2_+_23069210_23069327	1.07013	Lhx4	ENSMUST00000155602.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr10_-_37138863_37138937	1.06695	Lhx4	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr5_-_3647806_3648009	1.03598	Lhx4	ENSMUST00000119783.1|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1 	ENSMUST00000007559.8|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1
mm10_v2_chr7_+_66365905_66365905	1.02027	Lhx4	ENSMUST00000107486.1|Gm10974|ENSMUSG00000078677.1|predicted gene 10974
mm10_v2_chr3_+_32436151_32436151	1.00589	Lhx4	ENSMUST00000029201.7|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr9_+_72806874_72806874	1.00248	Lhx4	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chr11_+_109543694_109543754	0.976766	Lhx4	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr10_+_75037291_75037332	0.972182	Lhx4	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr17_-_26099257_26099259	0.961602	Lhx4	ENSMUST00000053575.3|Gm8186|ENSMUSG00000049124.3|predicted gene 8186
mm10_v2_chr3_-_67375163_67375163	0.954055	Lhx4	ENSMUST00000166353.1|Gm17402|ENSMUSG00000090408.1|predicted gene, 17402
mm10_v2_chr10_-_63421739_63421739	0.95402	Lhx4	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr14_+_58893465_58893506	0.947402	Lhx4	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr3_+_53845086_53845086	0.945763	Lhx4	ENSMUST00000108014.1|Gm10985|ENSMUSG00000078742.1|predicted gene 10985
mm10_v2_chr15_-_50889691_50889714	0.938583	Lhx4	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr18_-_15403680_15403687	0.925754	Lhx4	ENSMUST00000079081.6|Aqp4|ENSMUSG00000024411.9|aquaporin 4
mm10_v2_chr15_-_98221056_98221056	0.902968	Lhx4	ENSMUST00000170618.1|Olfr287|ENSMUSG00000090129.2|olfactory receptor 287 	ENSMUST00000141911.1|Olfr287|ENSMUSG00000090129.2|olfactory receptor 287
mm10_v2_chr2_-_174346712_174346712	0.897078	Lhx4	ENSMUST00000168292.1|Gm20721|ENSMUSG00000090625.1|predicted gene, 20721
mm10_v2_chr9_+_108339048_108339080	0.887123	Lhx4	ENSMUST00000082429.5|Gpx1|ENSMUSG00000063856.6|glutathione peroxidase 1
mm10_v2_chr16_-_64771146_64771184	0.869188	Lhx4	ENSMUST00000076991.6|4930453N24Rik|ENSMUSG00000059920.9|RIKEN cDNA 4930453N24 gene
mm10_v2_chr17_-_56036546_56036647	0.856571	Lhx4	ENSMUST00000003268.9|Sh3gl1|ENSMUSG00000003200.9|SH3-domain GRB2-like 1
mm10_v2_chr7_-_5014645_5014697	0.854227	Lhx4	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr18_+_60774675_60774686	0.854037	Lhx4	ENSMUST00000118551.1|Rps14|ENSMUSG00000024608.4|ribosomal protein S14
mm10_v2_chr1_+_153665627_153665657	0.853873	Lhx4	ENSMUST00000147482.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr2_-_73453918_73453979	0.845668	Lhx4	ENSMUST00000102679.1|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr2_-_73580288_73580353	0.828468	Lhx4	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr2_+_61804453_61804538	0.826975	Lhx4	ENSMUST00000048934.8|Tbr1|ENSMUSG00000035033.9|T-box brain gene 1
mm10_v2_chr1_+_153665587_153665595	0.821153	Lhx4	ENSMUST00000147700.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr7_+_126781483_126781483	0.818358	Lhx4	ENSMUST00000172352.1|Tbx6|ENSMUSG00000030699.10|T-box 6 	ENSMUST00000094037.4|Tbx6|ENSMUSG00000030699.10|T-box 6
mm10_v2_chr15_+_81744848_81744848	0.813392	Lhx4	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr19_+_38395980_38396022	0.781036	Lhx4	ENSMUST00000054098.2|Slc35g1|ENSMUSG00000044026.2|solute carrier family 35, member G1
mm10_v2_chr5_+_13398688_13398726	0.761266	Lhx4	ENSMUST00000125629.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr9_+_100597686_100597798	0.7548	Lhx4	ENSMUST00000124487.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr3_-_67515487_67515523	0.749762	Lhx4	ENSMUST00000178314.1|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1 	ENSMUST00000054825.4|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1
mm10_v2_chr2_+_3424123_3424207	0.746817	Lhx4	ENSMUST00000061852.5|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000100463.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000102988.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000115066.1|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)
mm10_v2_chr2_+_163658370_163658510	0.725355	Lhx4	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr18_+_60774510_60774625	0.717714	Lhx4	ENSMUST00000025511.3|Rps14|ENSMUSG00000024608.4|ribosomal protein S14
mm10_v2_chr16_-_44016387_44016436	0.715758	Lhx4	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr5_-_17888884_17888959	0.710602	Lhx4	ENSMUST00000169095.1|Cd36|ENSMUSG00000002944.9|CD36 antigen
mm10_v2_chr15_-_42676967_42676978	0.698492	Lhx4	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr6_+_29859686_29859710	0.683328	Lhx4	ENSMUST00000134438.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr11_-_89418948_89418948	0.683199	Lhx4	ENSMUST00000050983.1|4932411E22Rik|ENSMUSG00000047490.1|RIKEN cDNA 4932411E22 gene
mm10_v2_chr4_+_116596672_116596730	0.677098	Lhx4	ENSMUST00000051869.7|Ccdc17|ENSMUSG00000034035.12|coiled-coil domain containing 17
mm10_v2_chr6_+_29859662_29859685	0.673457	Lhx4	ENSMUST00000128927.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr14_+_74735641_74735663	0.65839	Lhx4	ENSMUST00000177283.1|Esd|ENSMUSG00000021996.10|esterase D/formylglutathione hydrolase
mm10_v2_chr5_+_34999046_34999069	0.635237	Lhx4	ENSMUST00000114281.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr7_+_126976338_126976400	0.619132	Lhx4	ENSMUST00000032920.3|Cdipt|ENSMUSG00000030682.3|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm10_v2_chr5_+_34999070_34999086	0.610513	Lhx4	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr11_+_82781108_82781224	0.607636	Lhx4	ENSMUST00000092849.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000021039.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000080461.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173347.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173727.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173009.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000131537.2|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173722.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent
mm10_v2_chr5_+_34999111_34999184	0.604463	Lhx4	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr6_+_113333304_113333332	0.599318	Lhx4	ENSMUST00000147945.1|Ogg1|ENSMUSG00000030271.8|8-oxoguanine DNA-glycosylase 1
mm10_v2_chr6_+_11926758_11926790	0.586953	Lhx4	ENSMUST00000133776.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr1_-_36273425_36273443	0.572093	Lhx4	ENSMUST00000056946.6|Neurl3|ENSMUSG00000047180.6|neuralized homolog 3 homolog (Drosophila)
mm10_v2_chr11_-_31671863_31671885	0.571958	Lhx4	ENSMUST00000058060.7|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr15_-_103215285_103215366	0.557855	Lhx4	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr16_-_29962307_29962307	0.548999	Lhx4	ENSMUST00000100016.3|Gm1968|ENSMUSG00000075286.3|predicted gene 1968
mm10_v2_chr8_+_110618577_110618638	0.534967	Lhx4	ENSMUST00000034190.9|Vac14|ENSMUSG00000010936.10|Vac14 homolog (S. cerevisiae)
mm10_v2_chr3_+_24333046_24333046	0.500843	Lhx4	ENSMUST00000077389.6|Gm7536|ENSMUSG00000057036.6|predicted gene 7536
mm10_v2_chr1_-_93445642_93445686	0.49721	Lhx4	ENSMUST00000042498.7|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chr16_-_22161450_22161450	0.494036	Lhx4	ENSMUST00000115379.1|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr4_-_58499398_58499409	0.484503	Lhx4	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr5_+_96210115_96210161	0.468421	Lhx4	ENSMUST00000036437.6|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1 	ENSMUST00000121477.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
mm10_v2_chr2_-_148046896_148046991	0.449315	Lhx4	ENSMUST00000172928.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2 	ENSMUST00000047315.3|Foxa2|ENSMUSG00000037025.5|forkhead box A2
mm10_v2_chr17_+_46650328_46650340	0.437148	Lhx4	ENSMUST00000043464.7|Cul7|ENSMUSG00000038545.7|cullin 7
mm10_v2_chrX_-_8252304_8252333	0.431691	Lhx4	ENSMUST00000115594.1|Ftsj1|ENSMUSG00000031171.5|FtsJ homolog 1 (E. coli)
mm10_v2_chr6_+_29859374_29859381	0.429605	Lhx4	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr1_-_127840290_127840290	0.429159	Lhx4	ENSMUST00000061512.2|Map3k19|ENSMUSG00000051590.2|mitogen-activated protein kinase kinase kinase 19
mm10_v2_chr16_-_56024628_56024668	0.419869	Lhx4	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr5_+_96209463_96209493	0.418538	Lhx4	ENSMUST00000117766.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
mm10_v2_chr12_-_73047179_73047179	0.413998	Lhx4	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr2_-_63184170_63184195	0.341802	Lhx4	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chrX_+_134686519_134686536	0.326345	Lhx4	ENSMUST00000124226.2|Armcx4|ENSMUSG00000049804.9|armadillo repeat containing, X-linked 4
mm10_v2_chr17_-_32822200_32822200	0.270472	Lhx4	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr1_+_85575676_85575676	0.262512	Lhx4	ENSMUST00000178024.1|G530012D18Rik|ENSMUSG00000094127.1|RIKEN cDNA G530012D1 gene
mm10_v2_chr3_-_41742471_41742548	0.251834	Lhx4	ENSMUST00000026866.8|Sclt1|ENSMUSG00000059834.6|sodium channel and clathrin linker 1
mm10_v2_chr13_+_67833235_67833235	0.248685	Lhx4	ENSMUST00000060609.7|Gm10037|ENSMUSG00000058246.6|predicted gene 10037
mm10_v2_chr4_+_147492417_147492417	0.240095	Lhx4	ENSMUST00000105721.2|Gm13152|ENSMUSG00000078496.3|predicted gene 13152
mm10_v2_chrX_+_169685191_169685250	0.234314	Lhx4	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr11_+_6560183_6560240	0.231237	Lhx4	ENSMUST00000109722.2|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr15_+_98571004_98571026	0.229945	Lhx4	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr3_+_142620596_142620627	0.213782	Lhx4	ENSMUST00000165774.1|Gbp2|ENSMUSG00000028270.6|guanylate binding protein 2
mm10_v2_chr2_-_32424005_32424029	0.198594	Lhx4	ENSMUST00000113307.2|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm10_v2_chr4_+_145510759_145510791	0.16799	Lhx4	ENSMUST00000105742.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225 	ENSMUST00000136309.1|Gm13225|ENSMUSG00000078503.3|predicted gene 13225
mm10_v2_chr11_-_31671727_31671856	0.159255	Lhx4	ENSMUST00000109415.1|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr16_-_21995478_21995542	0.133689	Lhx4	ENSMUST00000074230.4|Liph|ENSMUSG00000044626.6|lipase, member H 	ENSMUST00000060673.6|Liph|ENSMUSG00000044626.6|lipase, member H
mm10_v2_chr16_-_90810365_90810429	0.110936	Lhx4	ENSMUST00000140920.1|Urb1|ENSMUSG00000039929.8|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm10_v2_chr2_-_63184253_63184292	0.0826995	Lhx4	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr11_-_4095344_4095445	0.0638909	Lhx4	ENSMUST00000004868.5|Mtfp1|ENSMUSG00000004748.5|mitochondrial fission process 1
mm10_v2_chr6_-_39377681_39377710	0.0476948	Lhx4	ENSMUST00000090243.4|Slc37a3|ENSMUSG00000029924.9|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm10_v2_chr2_-_109280718_109280767	0.0337733	Lhx4	ENSMUST00000147770.1|Mettl15|ENSMUSG00000057234.3|methyltransferase like 15
mm10_v2_chr9_-_44802951_44802961	0.0322346	Lhx4	ENSMUST00000044694.6|Ttc36|ENSMUSG00000039438.6|tetratricopeptide repeat domain 36
mm10_v2_chr1_+_153665666_153665709	0.0267621	Lhx4	ENSMUST00000111814.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111810.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
