mm10_v2_chr5_-_134747241_134747264	11.602	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000015138.9|Eln|ENSMUSG00000029675.9|elastin
mm10_v2_chr14_-_118052235_118052253	6.25615	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr3_-_49757257_49757316	5.72398	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr19_+_26749726_26749877	5.09817	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175842.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr11_-_98053415_98053467	4.90051	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000017544.2|Stac2|ENSMUSG00000017400.4|SH3 and cysteine rich domain 2
mm10_v2_chr10_+_99263224_99263240	4.64372	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020118.4|Dusp6|ENSMUSG00000019960.7|dual specificity phosphatase 6
mm10_v2_chr2_-_77703252_77703272	4.62509	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171063.1|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr12_-_83487708_83487729	4.13696	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr16_+_42907563_42907684	3.97083	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr3_+_68572245_68572392	3.75696	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr2_+_116067213_116067250	3.74274	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr9_-_40346290_40346337	3.52989	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr2_-_116067391_116067444	3.34928	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr3_+_66219909_66219927	3.19651	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029421.5|Ptx3|ENSMUSG00000027832.5|pentraxin related gene
mm10_v2_chr5_-_62766153_62766246	3.15943	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr1_+_104768510_104768529	2.91969	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr6_+_125552948_125552980	2.67419	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr16_-_37384915_37384931	2.61162	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114787.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114782.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000023526.2|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114775.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr3_+_86070915_86070915	2.37406	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182666.1|Sh3d19|ENSMUSG00000028082.7|SH3 domain protein D19
mm10_v2_chr4_-_14621805_14621819	2.35174	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr16_+_45093611_45093622	2.33219	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099498.2|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr18_+_57468478_57468541	2.24021	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chr13_+_118714678_118714701	2.17321	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr18_-_37969742_37969782	2.08434	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166148.1|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1 	ENSMUST00000163131.1|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1 	ENSMUST00000043437.7|Fchsd1|ENSMUSG00000038524.7|FCH and double SH3 domains 1
mm10_v2_chr13_+_44121167_44121322	2.06444	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000163056.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083 	ENSMUST00000159595.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083
mm10_v2_chr4_-_14621494_14621506	1.95828	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr16_-_37384940_37384978	1.95584	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114781.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114780.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr9_+_45370185_45370208	1.62531	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000085939.6|Fxyd6|ENSMUSG00000066705.6|FXYD domain-containing ion transport regulator 6
mm10_v2_chr17_-_49564262_49564337	1.62413	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057610.6|Daam2|ENSMUSG00000040260.7|dishevelled associated activator of morphogenesis 2
mm10_v2_chr15_-_8710734_8710764	1.5773	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr7_+_126950687_126950729	1.56952	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr14_-_79771305_79771318	1.5047	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr8_+_54954728_54954820	1.49568	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr1_-_190170671_190170744	1.48783	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175916.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr1_-_155417394_155417435	1.45202	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111775.1|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1 	ENSMUST00000111774.1|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr7_+_126950518_126950584	1.41651	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr15_-_11037968_11037968	1.41424	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000058007.5|Rxfp3|ENSMUSG00000060735.3|relaxin family peptide receptor 3
mm10_v2_chr4_+_108719649_108719649	1.40535	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178992.1|3110021N24Rik|ENSMUSG00000094958.1|RIKEN cDNA 3110021N24 gene
mm10_v2_chr6_-_136171722_136171849	1.32934	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000053880.6|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr3_+_151437887_151437914	1.31143	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046977.7|Eltd1|ENSMUSG00000039167.7|EGF, latrophilin seven transmembrane domain containing 1
mm10_v2_chr15_-_8710409_8710498	1.30429	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr9_-_103222063_103222149	1.27226	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170904.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr8_-_120228221_120228297	1.27054	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chr3_+_62419668_62419668	1.2642	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161057.1|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr19_+_26750939_26750967	1.24431	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175953.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr17_+_75005523_75005568	1.22039	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr1_-_155417283_155417323	1.18553	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027741.5|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr7_+_126950837_126950966	1.18404	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr2_+_152754156_152754186	1.13619	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000010020.5|Cox4i2|ENSMUSG00000009876.7|cytochrome c oxidase subunit IV isoform 2
mm10_v2_chr7_-_45103747_45103822	1.13465	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003512.7|Fcgrt|ENSMUSG00000003420.7|Fc receptor, IgG, alpha chain transporter
mm10_v2_chr10_+_127420867_127420916	1.09422	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr13_+_16011851_16011949	1.07087	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042603.6|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr4_-_14621669_14621786	1.04341	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr1_-_158356258_158356313	1.02249	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr15_-_66812593_66812649	0.981443	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100572.3|Sla|ENSMUSG00000022372.8|src-like adaptor
mm10_v2_chr10_-_25200110_25200178	0.951734	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr5_+_34999111_34999184	0.951644	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr6_+_145934113_145934136	0.889384	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032383.7|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr2_-_72986716_72986716	0.880255	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr2_+_70474923_70474923	0.872346	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr15_+_25773985_25774042	0.852741	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr18_+_23415400_23415454	0.840802	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115832.2|Dtna|ENSMUSG00000024302.9|dystrobrevin alpha 	ENSMUST00000047954.7|Dtna|ENSMUSG00000024302.9|dystrobrevin alpha
mm10_v2_chr5_-_123141067_123141094	0.835144	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162697.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000160321.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000159637.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr10_+_127421124_127421203	0.824595	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170336.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr1_-_190170178_190170237	0.823974	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177288.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr13_+_75707484_75707510	0.795811	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001583.6|Ell2|ENSMUSG00000001542.6|elongation factor RNA polymerase II 2
mm10_v2_chr10_+_127421208_127421235	0.787215	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000168780.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr15_-_79285502_79285537	0.730516	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165408.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chr18_+_24603952_24603972	0.725385	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000025120.6|Elp2|ENSMUSG00000024271.7|elongator acetyltransferase complex subunit 2
mm10_v2_chr12_+_49382791_49382883	0.717621	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179669.1|Foxg1|ENSMUSG00000020950.9|forkhead box G1
mm10_v2_chr5_-_77115145_77115156	0.635979	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081964.5|Hopx|ENSMUSG00000059325.8|HOP homeobox
mm10_v2_chr6_+_63255971_63256036	0.614944	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159561.1|Grid2|ENSMUSG00000071424.3|glutamate receptor, ionotropic, delta 2 	ENSMUST00000095852.3|Grid2|ENSMUSG00000071424.3|glutamate receptor, ionotropic, delta 2
mm10_v2_chr5_-_62765618_62765656	0.60526	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr2_+_125136692_125136769	0.593101	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr2_-_33086366_33086447	0.580525	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr16_-_76373827_76373852	0.5678	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr16_-_74411292_74411430	0.562119	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr2_+_106693185_106693278	0.556475	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr1_-_152625212_152625220	0.553016	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr17_+_3397189_3397207	0.550475	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr17_-_29888570_29888629	0.533661	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171691.1|Mdga1|ENSMUSG00000043557.9|MAM domain containing glycosylphosphatidylinositol anchor 1
mm10_v2_chr4_+_154964117_154964147	0.529623	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000030931.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4 	ENSMUST00000070953.4|Pank4|ENSMUSG00000029056.7|pantothenate kinase 4
mm10_v2_chr3_-_55055038_55055055	0.524636	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr16_-_45724600_45724619	0.524125	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr5_+_34999070_34999086	0.522053	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr10_+_115569986_115570035	0.521951	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173620.1|A930009A15Rik|ENSMUSG00000092210.1|RIKEN cDNA A930009A15 gene
mm10_v2_chr5_-_137531204_137531297	0.517522	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr2_-_45117349_45117395	0.494037	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr13_-_113663670_113663681	0.48786	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054650.4|Hspb3|ENSMUSG00000051456.4|heat shock protein 3
mm10_v2_chr5_+_64812336_64812350	0.48509	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166409.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr2_+_132847719_132847743	0.482745	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr2_+_71528657_71528683	0.475765	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000126400.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
mm10_v2_chr7_-_45830776_45830944	0.472251	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr4_+_5724304_5724357	0.471889	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr14_+_79515618_79515694	0.453196	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr9_-_71163224_71163293	0.453071	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000074465.2|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr5_+_13398688_13398726	0.437575	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125629.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr13_+_42680565_42680623	0.432305	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128646.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr11_+_116843278_116843278	0.410323	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr13_+_83732438_83732566	0.407904	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr5_+_34999046_34999069	0.397749	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114281.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr1_+_132298606_132298631	0.382972	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chr18_+_37819543_37819570	0.374783	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055935.5|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr7_+_28881656_28881718	0.374605	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066880.4|Capn12|ENSMUSG00000054083.7|calpain 12
mm10_v2_chr4_-_155056784_155056827	0.351333	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000131173.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr12_-_91849081_91849157	0.350274	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167466.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000021347.5|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans) 	ENSMUST00000178462.1|Sel1l|ENSMUSG00000020964.8|sel-1 suppressor of lin-12-like (C. elegans)
mm10_v2_chr15_+_79690869_79690905	0.33815	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr8_+_121116163_121116177	0.336161	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054691.6|Foxc2|ENSMUSG00000046714.6|forkhead box C2
mm10_v2_chr2_+_9882622_9882646	0.325921	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114919.1|4930412O13Rik|ENSMUSG00000025783.2|RIKEN cDNA 4930412O13 gene
mm10_v2_chr11_-_119547744_119547759	0.308992	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr16_-_57754707_57754737	0.292761	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000089332.4|Col8a1|ENSMUSG00000068196.4|collagen, type VIII, alpha 1
mm10_v2_chrM_+_8600_8616	0.284765	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr12_+_111814170_111814245	0.281916	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr2_-_64975762_64975795	0.281228	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156765.1|Grb14|ENSMUSG00000026888.8|growth factor receptor bound protein 14
mm10_v2_chr5_-_137684665_137684729	0.277677	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr11_+_102285161_102285251	0.27158	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156326.1|Tmub2|ENSMUSG00000034757.9|transmembrane and ubiquitin-like domain containing 2
mm10_v2_chr5_-_23616528_23616597	0.270392	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr17_+_46161021_46161072	0.266585	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024748.7|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2 	ENSMUST00000172170.1|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2
mm10_v2_chr13_+_36117349_36117411	0.264934	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021857.5|Fars2|ENSMUSG00000021420.6|phenylalanine-tRNA synthetase 2 (mitochondrial) 	ENSMUST00000099582.2|Fars2|ENSMUSG00000021420.6|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm10_v2_chr5_-_137531952_137531984	0.263939	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140139.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr16_-_97170707_97170759	0.257792	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr8_+_107031218_107031229	0.257453	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034388.9|Vps4a|ENSMUSG00000031913.9|vacuolar protein sorting 4a (yeast)
mm10_v2_chr12_+_74297474_74297474	0.253617	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072100.3|Dbpht2|ENSMUSG00000029878.5|DNA binding protein with his-thr domain
mm10_v2_chr7_+_25681158_25681158	0.252155	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr5_-_122988533_122988705	0.243617	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr9_+_61372359_61372383	0.243551	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178113.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159386.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr13_-_23574196_23574229	0.243199	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105106.1|Hist1h2bf|ENSMUSG00000069268.4|histone cluster 1, H2bf
mm10_v2_chr3_-_94412883_94412890	0.241374	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181305.1|1700040D17Rik|ENSMUSG00000097515.1|RIKEN cDNA 1700040D17 gene
mm10_v2_chr9_+_32116040_32116136	0.239946	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000174641.1|Arhgap32|ENSMUSG00000041444.8|Rho GTPase activating protein 32
mm10_v2_chr13_-_18382041_18382041	0.237129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139064.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2 	ENSMUST00000175703.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2
mm10_v2_chr5_-_122989260_122989306	0.233838	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118027.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr17_+_45506825_45506857	0.231635	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024733.7|Aars2|ENSMUSG00000023938.7|alanyl-tRNA synthetase 2, mitochondrial (putative)
mm10_v2_chr8_+_83666827_83666882	0.220583	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr15_+_81744848_81744848	0.219144	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr6_+_29859686_29859710	0.217532	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134438.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr5_-_122989086_122989111	0.214155	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr7_+_102210335_102210445	0.213962	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140631.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000120879.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2 	ENSMUST00000146996.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr8_+_4238815_4238886	0.21326	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003027.7|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000110999.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr16_-_92400067_92400083	0.209827	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000023672.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr2_+_109917639_109917656	0.204912	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr13_+_80883403_80883422	0.200468	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr10_-_86011833_86011896	0.19584	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr7_-_81493725_81493783	0.195421	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119121.1|Ap3b2|ENSMUSG00000062444.8|adaptor-related protein complex 3, beta 2 subunit
mm10_v2_chr11_-_87359011_87359081	0.19499	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr2_+_52038005_52038020	0.193737	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000065927.5|Tnfaip6|ENSMUSG00000053475.5|tumor necrosis factor alpha induced protein 6
mm10_v2_chr3_+_96629919_96629955	0.190234	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000048915.6|Rbm8a|ENSMUSG00000038374.6|RNA binding motif protein 8a
mm10_v2_chr8_+_4238733_4238767	0.188126	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110998.2|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7 	ENSMUST00000062686.4|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chrX_+_166344692_166344770	0.1875	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112223.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112224.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112229.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112228.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112227.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112226.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr15_+_92597104_92597121	0.180594	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035399.8|Pdzrn4|ENSMUSG00000036218.9|PDZ domain containing RING finger 4
mm10_v2_chr3_-_141982224_141982264	0.174866	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr13_-_36117269_36117357	0.17422	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000053265.6|Lyrm4|ENSMUSG00000046573.6|LYR motif containing 4
mm10_v2_chr16_-_4880284_4880315	0.172804	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037843.6|Ubald1|ENSMUSG00000039568.6|UBA-like domain containing 1
mm10_v2_chr11_+_60537978_60538074	0.172328	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr6_+_29859662_29859685	0.165642	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128927.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr1_-_165934900_165935036	0.165394	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr12_-_48559971_48559971	0.163421	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169406.1|Gm1818|ENSMUSG00000091277.1|predicted gene 1818
mm10_v2_chr10_+_127420334_127420348	0.159956	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171434.1|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr10_+_39612934_39612934	0.15827	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr1_+_10993452_10993478	0.140129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027056.5|Prex2|ENSMUSG00000048960.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm10_v2_chr12_-_21417591_21417637	0.12827	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr11_+_23306884_23306906	0.124829	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180046.1|Usp34|ENSMUSG00000056342.10|ubiquitin specific peptidase 34
mm10_v2_chr4_+_116720920_116721004	0.120222	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000045542.6|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2 	ENSMUST00000106459.1|Tesk2|ENSMUSG00000033985.11|testis-specific kinase 2
mm10_v2_chr6_-_147264124_147264167	0.118534	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000052296.6|Pthlh|ENSMUSG00000048776.6|parathyroid hormone-like peptide
mm10_v2_chr11_-_33203588_33203599	0.115624	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037746.6|Tlx3|ENSMUSG00000040610.6|T cell leukemia, homeobox 3
mm10_v2_chr7_+_49910112_49910146	0.113687	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr11_+_23306910_23306937	0.112605	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137823.1|Usp34|ENSMUSG00000056342.10|ubiquitin specific peptidase 34
mm10_v2_chr17_-_29007925_29007962	0.111391	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr19_+_25672408_25672420	0.11067	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000053068.5|Dmrt2|ENSMUSG00000048138.9|doublesex and mab-3 related transcription factor 2
mm10_v2_chr6_+_29859374_29859381	0.109007	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr12_-_21417526_21417588	0.105442	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr2_+_73271925_73271939	0.0908393	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chr3_-_146682410_146682522	0.0834756	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124931.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13 	ENSMUST00000147113.1|Samd13|ENSMUSG00000048652.6|sterile alpha motif domain containing 13
mm10_v2_chr12_-_56613270_56613291	0.0797167	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chr11_-_97700327_97700497	0.0782657	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr3_-_59220150_59220259	0.0760081	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr18_+_9707639_9707661	0.0752244	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040069.8|Colec12|ENSMUSG00000036103.8|collectin sub-family member 12
mm10_v2_chr2_-_6721890_6721928	0.0740549	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr7_-_5014645_5014697	0.0738117	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr7_+_131542867_131542867	0.0692565	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046093.5|Hmx3|ENSMUSG00000040148.5|H6 homeobox 3
mm10_v2_chr12_+_21417872_21417911	0.0659556	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chrM_+_2743_2761	0.0658075	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr13_-_106847267_106847267	0.0630579	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057427.4|Lrrc70|ENSMUSG00000078933.1|leucine rich repeat containing 70
mm10_v2_chr15_+_21111452_21111452	0.0624028	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr1_-_87394721_87394734	0.0609949	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000113212.3|Kcnj13|ENSMUSG00000079436.3|potassium inwardly-rectifying channel, subfamily J, member 13
mm10_v2_chr13_+_23574381_23574449	0.0570878	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090776.4|Hist1h2ad|ENSMUSG00000071478.4|histone cluster 1, H2ad
mm10_v2_chr14_-_52104015_52104028	0.0566598	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111610.4|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C 	ENSMUST00000164655.1|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C
mm10_v2_chr13_-_53473074_53473074	0.0530305	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021922.8|Msx2|ENSMUSG00000021469.8|msh homeobox 2
mm10_v2_chr12_-_27160311_27160476	0.0526388	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr18_-_24603464_24603530	0.0504385	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chrX_-_157415286_157415318	0.0491093	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079945.4|Phex|ENSMUSG00000057457.5|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets) 	ENSMUST00000138396.1|Phex|ENSMUSG00000057457.5|phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets)
mm10_v2_chrX_-_139871637_139871677	0.0341369	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033811.7|Morc4|ENSMUSG00000031434.9|microrchidia 4 	ENSMUST00000087401.5|Morc4|ENSMUSG00000031434.9|microrchidia 4
mm10_v2_chr12_-_21417356_21417436	0.0334639	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr6_-_102464667_102464667	0.0328406	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr5_-_87482258_87482283	0.0322887	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079811.6|Ugt2a1|ENSMUSG00000029268.8|UDP glucuronosyltransferase 2 family, polypeptide A1 	ENSMUST00000144144.1|Ugt2a1|ENSMUSG00000029268.8|UDP glucuronosyltransferase 2 family, polypeptide A1
mm10_v2_chr8_+_25720054_25720099	0.0312605	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr13_-_73678005_73678026	0.0297034	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022105.7|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18 	ENSMUST00000109680.2|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18 	ENSMUST00000109679.2|Slc6a18|ENSMUSG00000021612.8|solute carrier family 6 (neurotransmitter transporter), member 18
mm10_v2_chr2_-_6721606_6721629	0.022782	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000150624.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000142941.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000100429.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182879.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr6_-_138421379_138421452	0.0210498	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr18_-_24603791_24603843	0.0153954	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070726.3|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr5_+_135106881_135106918	0.0132758	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005507.3|Mlxipl|ENSMUSG00000005373.7|MLX interacting protein-like
