mm10_v2_chr1_-_52490736_52490736	5.70534	Nanog	ENSMUST00000170269.1|Nab1|ENSMUSG00000002881.8|Ngfi-A binding protein 1
mm10_v2_chr12_+_72441933_72441970	5.32649	Nanog	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr12_+_72441852_72441866	4.6536	Nanog	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr2_+_134786154_134786170	4.12509	Nanog	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr7_+_82337218_82337218	3.60576	Nanog	ENSMUST00000173828.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr6_+_80018877_80018945	3.42464	Nanog	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr13_-_89742244_89742334	3.39303	Nanog	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr7_-_115846080_115846112	3.37798	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr9_+_65890237_65890343	3.37706	Nanog	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr9_-_52168111_52168111	3.2903	Nanog	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr6_+_80019008_80019048	3.28884	Nanog	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr13_-_89742490_89742515	3.17086	Nanog	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr1_-_158814469_158814469	3.15183	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr9_-_15357692_15357788	3.10608	Nanog	ENSMUST00000098979.3|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene 	ENSMUST00000161132.1|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene
mm10_v2_chr10_+_58394361_58394380	2.87082	Nanog	ENSMUST00000020077.4|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr10_+_58394381_58394395	2.84094	Nanog	ENSMUST00000105468.1|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr6_-_67037399_67037417	2.68691	Nanog	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr9_-_66514567_66514597	2.66707	Nanog	ENSMUST00000056890.8|Fbxl22|ENSMUSG00000050503.8|F-box and leucine-rich repeat protein 22
mm10_v2_chr13_-_85127514_85127514	2.58587	Nanog	ENSMUST00000179230.1|Gm4076|ENSMUSG00000096449.1|predicted gene 4076
mm10_v2_chr2_-_116067391_116067444	2.53993	Nanog	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr6_+_34746368_34746393	2.47021	Nanog	ENSMUST00000142716.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr13_-_47106176_47106206	2.37137	Nanog	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr7_+_79660196_79660261	2.36516	Nanog	ENSMUST00000035977.7|Ticrr|ENSMUSG00000046591.9|TOPBP1-interacting checkpoint and replication regulator
mm10_v2_chr15_+_25773985_25774042	2.35132	Nanog	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr7_+_112742025_112742060	2.34609	Nanog	ENSMUST00000164363.1|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr7_+_59228743_59228769	2.33044	Nanog	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr3_+_88081997_88082051	2.32567	Nanog	ENSMUST00000071812.5|Iqgap3|ENSMUSG00000028068.9|IQ motif containing GTPase activating protein 3
mm10_v2_chr14_+_73237891_73238007	2.2232	Nanog	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr8_-_61902669_61902713	2.18781	Nanog	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr14_+_56887795_56887795	2.12478	Nanog	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr3_-_123672321_123672400	2.04248	Nanog	ENSMUST00000172537.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 	ENSMUST00000029602.6|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr2_+_116067213_116067250	2.03963	Nanog	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr12_-_56345862_56345894	2.01336	Nanog	ENSMUST00000021416.7|Mbip|ENSMUSG00000021028.7|MAP3K12 binding inhibitory protein 1
mm10_v2_chr11_-_23895208_23895280	1.99135	Nanog	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr7_+_103550368_103550368	1.97768	Nanog	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr17_-_32800938_32800938	1.93495	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chr7_+_67647405_67647456	1.91285	Nanog	ENSMUST00000032774.8|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23 	ENSMUST00000107471.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr14_-_12345847_12345872	1.91051	Nanog	ENSMUST00000022262.4|Fezf2|ENSMUSG00000021743.5|Fez family zinc finger 2
mm10_v2_chr8_-_89044162_89044195	1.89513	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr7_-_6011010_6011010	1.86312	Nanog	ENSMUST00000086338.1|Vmn1r65|ENSMUSG00000066850.1|vomeronasal 1 receptor 65
mm10_v2_chrX_+_134308084_134308209	1.84803	Nanog	ENSMUST00000081064.5|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000101251.1|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000129782.1|Cenpi|ENSMUSG00000031262.6|centromere protein I
mm10_v2_chr10_-_42583628_42583639	1.83965	Nanog	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr17_+_21691860_21691860	1.83773	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chrX_-_53269786_53269858	1.79878	Nanog	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr11_-_40733373_40733442	1.79291	Nanog	ENSMUST00000020579.8|Hmmr|ENSMUSG00000020330.10|hyaluronan mediated motility receptor (RHAMM)
mm10_v2_chr16_+_87454976_87454987	1.78085	Nanog	ENSMUST00000119504.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16 	ENSMUST00000131356.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16
mm10_v2_chr4_-_58553553_58553898	1.77991	Nanog	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr14_-_26971232_26971232	1.76726	Nanog	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr14_-_78536762_78536851	1.76176	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr13_+_24943144_24943164	1.75597	Nanog	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr4_+_43059028_43059080	1.73556	Nanog	ENSMUST00000163653.1|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107952.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107953.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr2_+_18064564_18064644	1.69077	Nanog	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr3_-_146499721_146499803	1.68013	Nanog	ENSMUST00000029839.4|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr11_+_44617310_44617336	1.65157	Nanog	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr10_+_26772477_26772515	1.64716	Nanog	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr10_+_18469958_18469981	1.6425	Nanog	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr6_+_38551334_38551493	1.64133	Nanog	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr9_+_109096659_109096710	1.6225	Nanog	ENSMUST00000130366.1|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr11_-_94321957_94321988	1.61843	Nanog	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr2_+_20737306_20737321	1.61625	Nanog	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr16_+_19760902_19761054	1.59753	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr4_-_126968124_126968154	1.57213	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr4_+_43058939_43058969	1.56743	Nanog	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr6_+_38551786_38551851	1.54178	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr12_-_91384403_91384430	1.5195	Nanog	ENSMUST00000141429.1|Cep128|ENSMUSG00000061533.9|centrosomal protein 128
mm10_v2_chr11_+_86484647_86484716	1.50051	Nanog	ENSMUST00000020827.6|Rnft1|ENSMUSG00000020521.7|ring finger protein, transmembrane 1
mm10_v2_chr5_+_33658567_33658616	1.45327	Nanog	ENSMUST00000114426.3|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr5_+_33658123_33658160	1.43962	Nanog	ENSMUST00000074849.6|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3 	ENSMUST00000079534.4|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr1_+_174501796_174501843	1.42999	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr3_+_10088173_10088173	1.42451	Nanog	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr2_-_37703845_37703885	1.41059	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr2_+_144527718_144527773	1.39764	Nanog	ENSMUST00000028914.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F 	ENSMUST00000110017.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F
mm10_v2_chr9_-_7184440_7184518	1.38221	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr14_-_26534870_26534931	1.37939	Nanog	ENSMUST00000139075.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein 	ENSMUST00000102956.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein
mm10_v2_chr17_+_35379608_35379637	1.35182	Nanog	ENSMUST00000081435.4|H2-Q4|ENSMUSG00000035929.11|histocompatibility 2, Q region locus 4
mm10_v2_chr8_-_25201349_25201459	1.3078	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr2_+_29060239_29060287	1.30279	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr7_-_6730412_6730431	1.29925	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr5_-_16731074_16731074	1.29533	Nanog	ENSMUST00000073014.5|Gm8991|ENSMUSG00000059179.5|predicted pseudogene 8991
mm10_v2_chr19_-_56822161_56822220	1.28483	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr2_+_69897220_69897247	1.2798	Nanog	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr3_-_63851251_63851359	1.2588	Nanog	ENSMUST00000162269.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000159676.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000175947.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1
mm10_v2_chr15_-_50889043_50889054	1.25725	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr17_+_78491549_78491565	1.24446	Nanog	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr17_-_51826562_51826601	1.23028	Nanog	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr13_+_44729794_44729807	1.22889	Nanog	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr12_-_83487708_83487729	1.22443	Nanog	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr2_-_45112890_45113010	1.2035	Nanog	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr16_-_3872378_3872411	1.19812	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr15_-_51991679_51991760	1.18596	Nanog	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr3_+_88965812_88965812	1.16732	Nanog	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr12_-_101958148_101958246	1.15459	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr2_+_112379204_112379253	1.14666	Nanog	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr7_-_98656530_98656600	1.14663	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr2_+_62664279_62664300	1.13806	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr12_+_109549157_109549301	1.13651	Nanog	ENSMUST00000128458.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000150851.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr13_+_96082158_96082158	1.12729	Nanog	ENSMUST00000185178.1|Gm17190|ENSMUSG00000099115.1|predicted gene 17190
mm10_v2_chr3_+_103968110_103968446	1.11287	Nanog	ENSMUST00000117150.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000063717.7|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000055425.8|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000123611.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000090685.4|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr7_-_144939823_144939869	1.10031	Nanog	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr7_+_89404356_89404367	1.06359	Nanog	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr7_-_100467149_100467190	1.05949	Nanog	ENSMUST00000184420.1|RP23-308M1.2|ENSMUSG00000099137.1|RP23-308M1.2
mm10_v2_chr13_+_23752267_23752351	1.05781	Nanog	ENSMUST00000091703.2|Hist1h3b|ENSMUSG00000069267.2|histone cluster 1, H3b
mm10_v2_chr6_+_71282280_71282280	1.04312	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr6_-_39725448_39725478	1.04215	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr10_-_7212222_7212247	1.04057	Nanog	ENSMUST00000015346.5|Cnksr3|ENSMUSG00000015202.7|Cnksr family member 3
mm10_v2_chr11_+_95712673_95712673	1.03643	Nanog	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr6_+_124829540_124829577	1.03033	Nanog	ENSMUST00000150120.1|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr17_-_59013264_59013372	1.02711	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr4_+_116708467_116708509	1.02466	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr6_+_124829582_124829688	1.0178	Nanog	ENSMUST00000024270.7|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr1_+_93512079_93512125	0.993914	Nanog	ENSMUST00000120301.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000041983.4|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000122402.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2
mm10_v2_chr19_-_9899450_9899533	0.984947	Nanog	ENSMUST00000025562.7|Incenp|ENSMUSG00000024660.8|inner centromere protein
mm10_v2_chr3_+_114030532_114030571	0.983189	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr5_+_33658550_33658563	0.977662	Nanog	ENSMUST00000152847.1|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr1_-_60566708_60566769	0.971452	Nanog	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr3_+_37312514_37312575	0.964097	Nanog	ENSMUST00000057975.7|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human) 	ENSMUST00000108121.3|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human)
mm10_v2_chr13_-_9765137_9765321	0.962454	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr10_+_69785507_69785525	0.961079	Nanog	ENSMUST00000182993.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr19_-_53464721_53464833	0.945616	Nanog	ENSMUST00000180489.1|5830416P10Rik|ENSMUSG00000097636.1|RIKEN cDNA 5830416P10 gene
mm10_v2_chr2_+_69897255_69897303	0.934344	Nanog	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chrX_-_135009185_135009225	0.923377	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr5_-_103977360_103977403	0.922208	Nanog	ENSMUST00000048118.8|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr11_+_75468040_75468096	0.893327	Nanog	ENSMUST00000043598.7|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2 	ENSMUST00000108435.1|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2
mm10_v2_chr3_-_49757257_49757316	0.881574	Nanog	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr15_+_34453285_34453312	0.872828	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr8_-_36732897_36733054	0.872503	Nanog	ENSMUST00000098826.3|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr4_+_107968332_107968424	0.86733	Nanog	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr9_+_113930934_113930987	0.852457	Nanog	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr7_+_64287665_64287676	0.849248	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr12_-_111813834_111813858	0.848583	Nanog	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr9_+_108490676_108490692	0.834001	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr3_-_37312418_37312465	0.82864	Nanog	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr11_-_109298090_109298118	0.82168	Nanog	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr16_+_13671922_13671937	0.817484	Nanog	ENSMUST00000035426.5|3110001I22Rik|ENSMUSG00000079737.3|RIKEN cDNA 3110001I22 gene
mm10_v2_chr12_+_35047180_35047230	0.814316	Nanog	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr19_+_4003334_4003366	0.793291	Nanog	ENSMUST00000025806.3|Doc2g|ENSMUSG00000024871.4|double C2, gamma
mm10_v2_chr7_-_141655319_141655395	0.791638	Nanog	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr1_+_153874335_153874354	0.790699	Nanog	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr18_+_57142782_57142796	0.783762	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr8_+_84415348_84415392	0.779165	Nanog	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr11_-_107337556_107337637	0.776773	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr3_+_54481429_54481429	0.77389	Nanog	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chr15_-_93519499_93519526	0.767753	Nanog	ENSMUST00000109255.2|Prickle1|ENSMUSG00000036158.6|prickle homolog 1 (Drosophila)
mm10_v2_chr4_-_109665249_109665372	0.766303	Nanog	ENSMUST00000063531.4|Cdkn2c|ENSMUSG00000028551.8|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
mm10_v2_chr15_-_13173607_13173644	0.764352	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr19_+_60889749_60889749	0.757046	Nanog	ENSMUST00000003313.8|Grk5|ENSMUSG00000003228.8|G protein-coupled receptor kinase 5
mm10_v2_chr18_+_77185815_77185879	0.752862	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr1_-_186117251_186117310	0.74893	Nanog	ENSMUST00000045388.7|Lyplal1|ENSMUSG00000039246.7|lysophospholipase-like 1
mm10_v2_chr11_+_75532099_75532125	0.744724	Nanog	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr13_-_9764943_9764994	0.740664	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr3_-_39359128_39359160	0.739346	Nanog	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr16_+_32877775_32877831	0.736735	Nanog	ENSMUST00000023489.4|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1 	ENSMUST00000171325.1|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1
mm10_v2_chr2_+_32363680_32363810	0.718975	Nanog	ENSMUST00000113331.1|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1 	ENSMUST00000113338.2|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1
mm10_v2_chr1_+_135584773_135584773	0.710074	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr10_+_33905015_33905111	0.708488	Nanog	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr17_-_25727364_25727426	0.702318	Nanog	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr13_+_111686303_111686351	0.68586	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr13_+_104178797_104178872	0.685304	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr18_-_35215008_35215033	0.665888	Nanog	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr4_-_9669068_9669162	0.664039	Nanog	ENSMUST00000078139.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108340.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084915.4|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108337.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084912.5|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000038564.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000146441.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000098275.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
mm10_v2_chr8_-_120589304_120589304	0.652519	Nanog	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chrX_-_60893430_60893440	0.650322	Nanog	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr12_-_83921899_83921934	0.649256	Nanog	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr16_+_13671980_13672032	0.639296	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr13_-_3893556_3893589	0.626966	Nanog	ENSMUST00000099946.4|Net1|ENSMUSG00000021215.8|neuroepithelial cell transforming gene 1
mm10_v2_chr18_+_24205303_24205348	0.621643	Nanog	ENSMUST00000000430.7|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr13_-_104178399_104178480	0.615044	Nanog	ENSMUST00000179891.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000022224.9|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000141557.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000091264.1|Trappc13|ENSMUSG00000078936.1|trafficking protein particle complex 13 	ENSMUST00000144060.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13
mm10_v2_chr7_+_113514085_113514109	0.613417	Nanog	ENSMUST00000122890.1|Far1|ENSMUSG00000030759.10|fatty acyl CoA reductase 1
mm10_v2_chr2_-_176149825_176149825	0.600251	Nanog	ENSMUST00000109049.3|Gm2004|ENSMUSG00000095648.1|predicted gene 2004 	ENSMUST00000179349.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr9_+_104063678_104063710	0.593753	Nanog	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr16_+_13671858_13671918	0.59086	Nanog	ENSMUST00000023365.6|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr2_+_3513035_3513074	0.576261	Nanog	ENSMUST00000036350.2|Cdnf|ENSMUSG00000039496.2|cerebral dopamine neurotrophic factor
mm10_v2_chr1_-_172027251_172027268	0.56579	Nanog	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr4_+_128688726_128688795	0.556135	Nanog	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr13_-_12258093_12258134	0.551957	Nanog	ENSMUST00000099856.4|Mtr|ENSMUSG00000021311.8|5-methyltetrahydrofolate-homocysteine methyltransferase
mm10_v2_chr14_+_79515618_79515694	0.544753	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr2_+_130576170_130576176	0.539073	Nanog	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr4_-_46650102_46650209	0.536301	Nanog	ENSMUST00000084621.5|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2 	ENSMUST00000107750.1|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2
mm10_v2_chr7_+_119561699_119561726	0.532372	Nanog	ENSMUST00000167935.2|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2 	ENSMUST00000130583.1|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2
mm10_v2_chr5_-_99978914_99978966	0.53232	Nanog	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr10_+_53337686_53337724	0.528478	Nanog	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr3_-_144760841_144760868	0.526828	Nanog	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr5_-_147076482_147076586	0.52545	Nanog	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr11_+_88294043_88294073	0.501618	Nanog	ENSMUST00000037268.4|1700106J16Rik|ENSMUSG00000034031.4|RIKEN cDNA 1700106J16 gene
mm10_v2_chr12_-_20900867_20900867	0.498038	Nanog	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr3_-_69127098_69127113	0.490696	Nanog	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chrY_-_1245685_1245752	0.487062	Nanog	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr12_-_83921809_83921898	0.486956	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr8_+_78509319_78509399	0.475884	Nanog	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr5_-_134456702_134456785	0.469021	Nanog	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr4_-_149454971_149454986	0.468313	Nanog	ENSMUST00000030848.2|Rbp7|ENSMUSG00000028996.3|retinol binding protein 7, cellular
mm10_v2_chr4_+_129336012_129336041	0.463306	Nanog	ENSMUST00000119480.1|Zbtb8os|ENSMUSG00000057572.9|zinc finger and BTB domain containing 8 opposite strand
mm10_v2_chr17_+_35841491_35841515	0.449444	Nanog	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr9_+_44379536_44379624	0.4458	Nanog	ENSMUST00000161318.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1 	ENSMUST00000160902.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr10_+_39612934_39612934	0.421945	Nanog	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr1_+_74362108_74362156	0.41757	Nanog	ENSMUST00000097697.1|Gm216|ENSMUSG00000073650.2|predicted gene 216
mm10_v2_chr11_+_43151599_43151599	0.414031	Nanog	ENSMUST00000077659.5|Atp10b|ENSMUSG00000055415.7|ATPase, class V, type 10B
mm10_v2_chr17_+_35841668_35841683	0.394446	Nanog	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr9_-_103365769_103365785	0.375068	Nanog	ENSMUST00000035484.4|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3 	ENSMUST00000072249.6|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr8_-_34965631_34965714	0.359804	Nanog	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr19_-_45783512_45783558	0.356107	Nanog	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr1_-_172082757_172082795	0.34788	Nanog	ENSMUST00000003550.4|Ncstn|ENSMUSG00000003458.6|nicastrin
mm10_v2_chr17_+_8849974_8850001	0.339328	Nanog	ENSMUST00000115720.1|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr19_+_6046576_6046662	0.331934	Nanog	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr12_-_113330518_113330523	0.329919	Nanog	ENSMUST00000103420.1|Ighg1|ENSMUSG00000076614.2|immunoglobulin heavy constant gamma 1 (G1m marker)
mm10_v2_chr14_+_61607455_61607482	0.321154	Nanog	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr11_-_70969953_70969978	0.305567	Nanog	ENSMUST00000108530.1|Nup88|ENSMUSG00000040667.5|nucleoporin 88 	ENSMUST00000035283.4|Nup88|ENSMUSG00000040667.5|nucleoporin 88 	ENSMUST00000108531.1|Nup88|ENSMUSG00000040667.5|nucleoporin 88
mm10_v2_chr12_-_34528844_34528904	0.30211	Nanog	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chrX_+_169879596_169879664	0.299725	Nanog	ENSMUST00000112105.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000078947.5|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr3_+_108653931_108653964	0.288387	Nanog	ENSMUST00000029483.8|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1 	ENSMUST00000124384.1|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1
mm10_v2_chr9_-_44305595_44305688	0.287007	Nanog	ENSMUST00000034629.4|Hinfp|ENSMUSG00000032119.4|histone H4 transcription factor
mm10_v2_chr9_+_44379490_44379513	0.281628	Nanog	ENSMUST00000066601.6|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr5_+_57718021_57718104	0.280503	Nanog	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr6_+_29348069_29348123	0.279888	Nanog	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr9_+_54538984_54538993	0.278955	Nanog	ENSMUST00000060242.5|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7 	ENSMUST00000118413.1|Sh2d7|ENSMUSG00000046460.8|SH2 domain containing 7
mm10_v2_chr15_-_71954395_71954424	0.278557	Nanog	ENSMUST00000159410.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr5_+_121397936_121398004	0.273262	Nanog	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr11_-_109298066_109298079	0.248282	Nanog	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr4_+_109343029_109343081	0.246881	Nanog	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chrX_-_20962005_20962025	0.242206	Nanog	ENSMUST00000123836.1|Uxt|ENSMUSG00000001134.3|ubiquitously expressed transcript
mm10_v2_chr6_-_8259098_8259173	0.239925	Nanog	ENSMUST00000012627.4|Rpa3|ENSMUSG00000012483.4|replication protein A3
mm10_v2_chr1_+_169969409_169969454	0.234212	Nanog	ENSMUST00000180638.1|3110045C21Rik|ENSMUSG00000097503.1|RIKEN cDNA 3110045C21 gene
mm10_v2_chr8_-_35495487_35495545	0.23166	Nanog	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr5_+_25246775_25246802	0.219301	Nanog	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr8_+_84686300_84686348	0.218219	Nanog	ENSMUST00000177531.1|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1
mm10_v2_chr15_+_80255184_80255263	0.215755	Nanog	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr15_-_103251465_103251705	0.214364	Nanog	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr2_+_130274437_130274492	0.20508	Nanog	ENSMUST00000141872.1|Nop56|ENSMUSG00000027405.10|NOP56 ribonucleoprotein
mm10_v2_chr10_-_9901079_9901250	0.19397	Nanog	ENSMUST00000141722.1|Stxbp5|ENSMUSG00000019790.10|syntaxin binding protein 5 (tomosyn)
mm10_v2_chr10_-_99126321_99126321	0.193609	Nanog	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr2_-_144527341_144527424	0.173725	Nanog	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chrX_+_7822289_7822289	0.172148	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr13_-_19619820_19619830	0.170983	Nanog	ENSMUST00000002885.6|Epdr1|ENSMUSG00000002808.6|ependymin related protein 1 (zebrafish)
mm10_v2_chr7_+_83755904_83755956	0.170072	Nanog	ENSMUST00000051522.8|Gm7964|ENSMUSG00000063902.6|predicted gene 7964 	ENSMUST00000042280.7|Gm7964|ENSMUSG00000063902.6|predicted gene 7964
mm10_v2_chr17_-_43543639_43543639	0.169548	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr9_-_20959785_20959888	0.164138	Nanog	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr13_+_12565868_12565883	0.163293	Nanog	ENSMUST00000071973.6|Ero1lb|ENSMUSG00000057069.6|ERO1-like beta (S. cerevisiae)
mm10_v2_chr2_-_86347764_86347764	0.157991	Nanog	ENSMUST00000099894.2|Olfr1055|ENSMUSG00000075189.2|olfactory receptor 1055
mm10_v2_chr11_-_102406783_102406955	0.147984	Nanog	ENSMUST00000155104.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39 	ENSMUST00000130436.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39
mm10_v2_chr11_+_115154139_115154194	0.147044	Nanog	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr7_-_90475971_90476003	0.141676	Nanog	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr9_+_92309362_92309386	0.14104	Nanog	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr3_+_65666223_65666259	0.128093	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr11_-_101171302_101171353	0.126324	Nanog	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr16_+_16983454_16983567	0.125402	Nanog	ENSMUST00000115731.1|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1
mm10_v2_chr2_+_115581667_115581743	0.121433	Nanog	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr10_+_77622363_77622378	0.119465	Nanog	ENSMUST00000172772.1|Ube2g2|ENSMUSG00000009293.11|ubiquitin-conjugating enzyme E2G 2
mm10_v2_chr10_+_75037066_75037100	0.119142	Nanog	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr7_+_101896340_101896431	0.110103	Nanog	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr5_-_100373484_100373527	0.106808	Nanog	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr4_-_11386757_11386783	0.104863	Nanog	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr17_+_40811089_40811133	0.102386	Nanog	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr2_+_29346803_29346842	0.0930034	Nanog	ENSMUST00000028139.4|Med27|ENSMUSG00000026799.9|mediator complex subunit 27 	ENSMUST00000113830.4|Med27|ENSMUSG00000026799.9|mediator complex subunit 27
mm10_v2_chr6_+_83185946_83186151	0.0927444	Nanog	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr7_+_28881656_28881718	0.0922599	Nanog	ENSMUST00000066880.4|Capn12|ENSMUSG00000054083.7|calpain 12
mm10_v2_chr10_-_117224480_117224507	0.0920599	Nanog	ENSMUST00000020382.6|Yeats4|ENSMUSG00000020171.7|YEATS domain containing 4
mm10_v2_chr4_+_136310952_136310984	0.0920417	Nanog	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chrX_+_150594420_150594478	0.0913719	Nanog	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr16_+_13358375_13358439	0.0854377	Nanog	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr19_-_43524462_43524605	0.083555	Nanog	ENSMUST00000026196.7|Got1|ENSMUSG00000025190.7|glutamate oxaloacetate transaminase 1, soluble
mm10_v2_chr9_-_44342332_44342381	0.0704878	Nanog	ENSMUST00000097558.3|Hmbs|ENSMUSG00000032126.9|hydroxymethylbilane synthase
mm10_v2_chr7_+_25681158_25681158	0.0682649	Nanog	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr4_+_101507855_101507871	0.0641602	Nanog	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr1_+_172082796_172082855	0.0625111	Nanog	ENSMUST00000027833.5|Copa|ENSMUSG00000026553.11|coatomer protein complex subunit alpha
mm10_v2_chr13_-_21716143_21716189	0.0534914	Nanog	ENSMUST00000091756.1|Hist1h2bl|ENSMUSG00000094338.1|histone cluster 1, H2bl
mm10_v2_chr10_-_128626464_128626520	0.0467391	Nanog	ENSMUST00000026420.5|Rps26|ENSMUSG00000025362.5|ribosomal protein S26
mm10_v2_chr3_+_79884496_79884571	0.0392318	Nanog	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr2_+_11339461_11339501	0.0192259	Nanog	ENSMUST00000131188.1|Gm13293|ENSMUSG00000086006.1|predicted gene 13293
mm10_v2_chr4_+_126024506_126024550	0.0153924	Nanog	ENSMUST00000106162.1|Csf3r|ENSMUSG00000028859.8|colony stimulating factor 3 receptor (granulocyte)
mm10_v2_chr9_-_15301555_15301607	0.0113635	Nanog	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr7_-_63212514_63212531	0.0103478	Nanog	ENSMUST00000032738.5|Chrna7|ENSMUSG00000030525.7|cholinergic receptor, nicotinic, alpha polypeptide 7
mm10_v2_chrX_-_56822308_56822346	0.00754229	Nanog	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr17_+_7170101_7170132	0.00569165	Nanog	ENSMUST00000024575.6|Rps6ka2|ENSMUSG00000023809.9|ribosomal protein S6 kinase, polypeptide 2
mm10_v2_chrX_-_153037549_153037581	0.00409835	Nanog	ENSMUST00000051484.3|Mageh1|ENSMUSG00000047238.3|melanoma antigen, family H, 1
