mm10_v2_chr11_+_117849223_117849251	2.87656	Nkx2-9	ENSMUST00000081387.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr11_-_84068766_84068801	2.68777	Nkx2-9	ENSMUST00000018792.5|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr4_+_8690399_8690470	2.3751	Nkx2-9	ENSMUST00000127476.1|Chd7|ENSMUSG00000041235.5|chromodomain helicase DNA binding protein 7
mm10_v2_chr2_+_181767040_181767073	2.21265	Nkx2-9	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr5_+_30105161_30105219	2.0049	Nkx2-9	ENSMUST00000058045.4|Gareml|ENSMUSG00000044576.6|GRB2 associated, regulator of MAPK1-like
mm10_v2_chr13_-_71963713_71963729	1.96417	Nkx2-9	ENSMUST00000077337.8|Irx1|ENSMUSG00000060969.8|Iroquois related homeobox 1 (Drosophila)
mm10_v2_chr11_+_117849286_117849340	1.92467	Nkx2-9	ENSMUST00000093906.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr2_+_173022360_173022438	1.9039	Nkx2-9	ENSMUST00000173997.1|Rbm38|ENSMUSG00000027510.11|RNA binding motif protein 38
mm10_v2_chr1_-_135688094_135688149	1.62078	Nkx2-9	ENSMUST00000112103.1|Nav1|ENSMUSG00000090399.1|neuron navigator 1
mm10_v2_chr14_+_75455957_75455996	1.4769	Nkx2-9	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr10_+_88091070_88091076	1.36946	Nkx2-9	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr7_+_70388305_70388305	1.33558	Nkx2-9	ENSMUST00000080024.5|B130024G19Rik|ENSMUSG00000062383.5|RIKEN cDNA B130024G19 gene
mm10_v2_chr8_-_80880479_80880499	1.24758	Nkx2-9	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chr8_+_95633500_95633586	1.23789	Nkx2-9	ENSMUST00000034094.9|Gins3|ENSMUSG00000031669.9|GINS complex subunit 3 (Psf3 homolog)
mm10_v2_chr6_-_6217023_6217125	1.23214	Nkx2-9	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr16_-_33380717_33380755	1.17631	Nkx2-9	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chr6_-_101377897_101378016	1.13568	Nkx2-9	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr6_-_142507805_142507962	1.04998	Nkx2-9	ENSMUST00000134191.1|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B 	ENSMUST00000032373.5|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B
mm10_v2_chr7_+_75610038_75610080	1.04876	Nkx2-9	ENSMUST00000125771.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr1_-_131097535_131097576	1.04824	Nkx2-9	ENSMUST00000016672.4|Mapkapk2|ENSMUSG00000016528.4|MAP kinase-activated protein kinase 2
mm10_v2_chr12_-_56536895_56536937	1.0419	Nkx2-9	ENSMUST00000001536.8|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr8_-_70700070_70700088	0.954568	Nkx2-9	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr1_-_181842334_181842401	0.944375	Nkx2-9	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chr16_-_59555752_59555752	0.922508	Nkx2-9	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr2_+_20737306_20737321	0.865441	Nkx2-9	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr9_-_60522017_60522058	0.857516	Nkx2-9	ENSMUST00000140824.1|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr2_+_103969528_103969567	0.822986	Nkx2-9	ENSMUST00000123437.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2 	ENSMUST00000163256.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2
mm10_v2_chr13_+_72632597_72632625	0.803609	Nkx2-9	ENSMUST00000172353.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr18_+_77185815_77185879	0.789012	Nkx2-9	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr7_-_44669308_44669348	0.693892	Nkx2-9	ENSMUST00000148487.1|Myh14|ENSMUSG00000030739.11|myosin, heavy polypeptide 14
mm10_v2_chr15_+_79690869_79690905	0.677713	Nkx2-9	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr19_+_43752996_43753137	0.663371	Nkx2-9	ENSMUST00000026199.7|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000112047.3|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000153295.1|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli)
mm10_v2_chr10_+_68723723_68723760	0.63088	Nkx2-9	ENSMUST00000080995.6|Tmem26|ENSMUSG00000060044.7|transmembrane protein 26
mm10_v2_chr6_-_101377342_101377388	0.592575	Nkx2-9	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr11_+_88718442_88718645	0.57954	Nkx2-9	ENSMUST00000138007.1|C030037D09Rik|ENSMUSG00000087574.1|RIKEN cDNA C030037D09 gene
mm10_v2_chr4_-_72852622_72852648	0.566997	Nkx2-9	ENSMUST00000179234.1|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1 	ENSMUST00000078617.4|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1
mm10_v2_chr16_+_70313949_70314016	0.559677	Nkx2-9	ENSMUST00000163832.1|Gbe1|ENSMUSG00000022707.10|glucan (1,4-alpha-), branching enzyme 1
mm10_v2_chr4_+_44981389_44981461	0.553496	Nkx2-9	ENSMUST00000045078.6|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000128973.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000151148.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase
mm10_v2_chr1_-_74600564_74600622	0.544545	Nkx2-9	ENSMUST00000127938.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000154874.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25
mm10_v2_chr17_+_34263209_34263256	0.543069	Nkx2-9	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr1_+_59256906_59256907	0.536777	Nkx2-9	ENSMUST00000160662.1|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15 	ENSMUST00000114248.2|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15
mm10_v2_chrX_-_102189371_102189394	0.534218	Nkx2-9	ENSMUST00000033683.7|Rps4x|ENSMUSG00000031320.9|ribosomal protein S4, X-linked
mm10_v2_chr8_+_95320440_95320496	0.524338	Nkx2-9	ENSMUST00000162294.1|Tepp|ENSMUSG00000090206.1|testis, prostate and placenta expressed
mm10_v2_chr17_+_46496753_46496809	0.51041	Nkx2-9	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chr4_-_21685782_21685805	0.501412	Nkx2-9	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr9_+_74861888_74861921	0.475597	Nkx2-9	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr17_-_51833278_51833299	0.464036	Nkx2-9	ENSMUST00000133574.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chrX_-_95658379_95658390	0.46036	Nkx2-9	ENSMUST00000119640.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chrX_-_95658392_95658412	0.45985	Nkx2-9	ENSMUST00000120620.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chrX_-_165004829_165004829	0.456981	Nkx2-9	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr3_+_138277489_138277495	0.450443	Nkx2-9	ENSMUST00000004232.9|Adh1|ENSMUSG00000074207.4|alcohol dehydrogenase 1 (class I)
mm10_v2_chr9_-_106887000_106887094	0.442987	Nkx2-9	ENSMUST00000055843.7|Rbm15b|ENSMUSG00000045365.7|RNA binding motif protein 15B
mm10_v2_chr10_+_19934472_19934526	0.426692	Nkx2-9	ENSMUST00000095806.3|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5 	ENSMUST00000120259.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr17_-_25785324_25785343	0.424589	Nkx2-9	ENSMUST00000150324.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like
mm10_v2_chr7_+_30280094_30280188	0.419722	Nkx2-9	ENSMUST00000108187.1|Thap8|ENSMUSG00000013928.6|THAP domain containing 8 	ENSMUST00000014072.5|Thap8|ENSMUSG00000013928.6|THAP domain containing 8
mm10_v2_chr10_+_94198955_94199043	0.41965	Nkx2-9	ENSMUST00000020209.9|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENSMUST00000179990.1|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm10_v2_chr7_+_4925802_4925868	0.419212	Nkx2-9	ENSMUST00000057612.7|Ssc5d|ENSMUSG00000035279.7|scavenger receptor cysteine rich domain containing (5 domains)
mm10_v2_chrX_-_95658416_95658509	0.391799	Nkx2-9	ENSMUST00000044382.6|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr15_-_98918131_98918231	0.389343	Nkx2-9	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr11_-_109363654_109363654	0.377875	Nkx2-9	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr12_+_71136848_71136848	0.377115	Nkx2-9	ENSMUST00000149564.1|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene 	ENSMUST00000045907.8|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene
mm10_v2_chr17_-_36058371_36058371	0.372202	Nkx2-9	ENSMUST00000113742.2|Gm11127|ENSMUSG00000079492.2|predicted gene 11127
mm10_v2_chr2_-_129699833_129699850	0.368669	Nkx2-9	ENSMUST00000028883.5|Pdyn|ENSMUSG00000027400.5|prodynorphin
mm10_v2_chr11_-_100759740_100759754	0.36425	Nkx2-9	ENSMUST00000107361.2|Kcnh4|ENSMUSG00000035355.9|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm10_v2_chr2_+_80315461_80315511	0.357526	Nkx2-9	ENSMUST00000028392.7|Dnajc10|ENSMUSG00000027006.7|DnaJ (Hsp40) homolog, subfamily C, member 10
mm10_v2_chr11_+_108920342_108920358	0.354511	Nkx2-9	ENSMUST00000052915.7|Axin2|ENSMUSG00000000142.9|axin2
mm10_v2_chr9_+_75775355_75775378	0.339947	Nkx2-9	ENSMUST00000012281.7|Bmp5|ENSMUSG00000032179.7|bone morphogenetic protein 5
mm10_v2_chr10_-_59221757_59221847	0.33974	Nkx2-9	ENSMUST00000165971.1|Sept10|ENSMUSG00000019917.9|septin 10
mm10_v2_chr4_-_141664063_141664170	0.324698	Nkx2-9	ENSMUST00000084203.4|Plekhm2|ENSMUSG00000028917.8|pleckstrin homology domain containing, family M (with RUN domain) member 2
mm10_v2_chr4_-_119190005_119190016	0.32413	Nkx2-9	ENSMUST00000138395.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein 	ENSMUST00000156746.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein
mm10_v2_chr17_-_25785533_25785673	0.318669	Nkx2-9	ENSMUST00000140738.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000145053.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000138759.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000133071.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000077938.3|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like
mm10_v2_chr7_-_126475082_126475130	0.318181	Nkx2-9	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr10_+_127420867_127420916	0.316026	Nkx2-9	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr7_-_142576492_142576538	0.309237	Nkx2-9	ENSMUST00000140716.1|H19|ENSMUSG00000000031.9|H19 fetal liver mRNA
mm10_v2_chr7_-_101921186_101921230	0.299	Nkx2-9	ENSMUST00000106965.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106968.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106967.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chr16_-_76403673_76403717	0.290961	Nkx2-9	ENSMUST00000052867.7|Gm9843|ENSMUSG00000050299.7|predicted gene 9843
mm10_v2_chr6_+_31574967_31574991	0.284671	Nkx2-9	ENSMUST00000150540.1|Gm6117|ENSMUSG00000086732.1|predicted gene 6117
mm10_v2_chr3_-_37125943_37125969	0.277954	Nkx2-9	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr7_-_102018139_102018206	0.277228	Nkx2-9	ENSMUST00000094134.3|Il18bp|ENSMUSG00000070427.3|interleukin 18 binding protein
mm10_v2_chr11_+_70030023_70030083	0.275052	Nkx2-9	ENSMUST00000143920.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr10_+_63061582_63061618	0.274014	Nkx2-9	ENSMUST00000020266.8|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1 	ENSMUST00000178684.1|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1
mm10_v2_chr2_-_165283599_165283620	0.256514	Nkx2-9	ENSMUST00000155289.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2
mm10_v2_chr14_-_46831984_46832057	0.253853	Nkx2-9	ENSMUST00000181311.1|Gm10101|ENSMUSG00000061510.3|predicted gene 10101 	ENSMUST00000074862.2|Gm10101|ENSMUSG00000061510.3|predicted gene 10101
mm10_v2_chr16_+_32271468_32271523	0.253274	Nkx2-9	ENSMUST00000093183.3|Smco1|ENSMUSG00000046345.4|single-pass membrane protein with coiled-coil domains 1
mm10_v2_chr13_+_75839868_75839881	0.247998	Nkx2-9	ENSMUST00000022082.7|Glrx|ENSMUSG00000021591.7|glutaredoxin
mm10_v2_chr16_-_46155077_46155077	0.245236	Nkx2-9	ENSMUST00000059524.5|Gm4737|ENSMUSG00000048087.5|predicted gene 4737
mm10_v2_chrX_+_42149534_42149683	0.240036	Nkx2-9	ENSMUST00000127618.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr11_-_22982090_22982382	0.234968	Nkx2-9	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr7_-_101921175_101921183	0.231167	Nkx2-9	ENSMUST00000098236.2|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chr6_-_34977999_34977999	0.220745	Nkx2-9	ENSMUST00000044387.7|2010107G12Rik|ENSMUSG00000029847.7|RIKEN cDNA 2010107G12 gene
mm10_v2_chrX_+_7878298_7878314	0.22019	Nkx2-9	ENSMUST00000033495.8|Pim2|ENSMUSG00000031155.8|proviral integration site 2
mm10_v2_chr4_-_41275091_41275144	0.214558	Nkx2-9	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr3_-_95411176_95411176	0.201828	Nkx2-9	ENSMUST00000177599.1|Gm5070|ENSMUSG00000096177.1|predicted gene 5070
mm10_v2_chr14_+_77156733_77156823	0.199685	Nkx2-9	ENSMUST00000022589.7|Enox1|ENSMUSG00000022012.8|ecto-NOX disulfide-thiol exchanger 1
mm10_v2_chrX_+_152001845_152001908	0.197817	Nkx2-9	ENSMUST00000026289.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10 	ENSMUST00000112617.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10
mm10_v2_chr1_+_74153981_74154003	0.189701	Nkx2-9	ENSMUST00000027372.7|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2 	ENSMUST00000106899.2|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2
mm10_v2_chr4_-_134853294_134853345	0.189283	Nkx2-9	ENSMUST00000030628.8|Tmem57|ENSMUSG00000028826.8|transmembrane protein 57
mm10_v2_chr12_+_24572276_24572308	0.180309	Nkx2-9	ENSMUST00000085553.5|Grhl1|ENSMUSG00000020656.9|grainyhead-like 1 (Drosophila)
mm10_v2_chr14_+_53665912_53665946	0.176332	Nkx2-9	ENSMUST00000181768.1|Trav3-3|ENSMUSG00000094828.4|T cell receptor alpha variable 3-3
mm10_v2_chr10_+_82378593_82378593	0.175559	Nkx2-9	ENSMUST00000165906.1|Gm4924|ENSMUSG00000073427.3|predicted gene 4924
mm10_v2_chr17_+_34644764_34644797	0.163045	Nkx2-9	ENSMUST00000036720.8|Fkbpl|ENSMUSG00000033739.8|FK506 binding protein-like
mm10_v2_chr12_-_55080098_55080121	0.1627	Nkx2-9	ENSMUST00000021406.5|2700097O09Rik|ENSMUSG00000062198.4|RIKEN cDNA 2700097O09 gene
mm10_v2_chr2_-_26910569_26910677	0.148107	Nkx2-9	ENSMUST00000015920.5|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000139815.1|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000102899.3|Med22|ENSMUSG00000015776.6|mediator complex subunit 22
mm10_v2_chr11_-_32267547_32267707	0.134763	Nkx2-9	ENSMUST00000109389.2|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000129010.1|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000020530.5|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3
mm10_v2_chr5_+_147430407_147430545	0.12047	Nkx2-9	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr6_+_66896480_66896549	0.120369	Nkx2-9	ENSMUST00000114222.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr6_+_42286676_42286687	0.118302	Nkx2-9	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr3_-_34351685_34351715	0.11426	Nkx2-9	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chrX_-_49788204_49788243	0.109344	Nkx2-9	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr17_-_25861456_25861510	0.108824	Nkx2-9	ENSMUST00000079461.8|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90 	ENSMUST00000176923.1|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90
mm10_v2_chr5_-_24445254_24445287	0.106842	Nkx2-9	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chrX_+_42149288_42149412	0.106244	Nkx2-9	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr9_-_56161051_56161075	0.101585	Nkx2-9	ENSMUST00000034876.8|Tspan3|ENSMUSG00000032324.10|tetraspanin 3
mm10_v2_chr16_-_35490873_35490891	0.0897097	Nkx2-9	ENSMUST00000023550.7|Pdia5|ENSMUSG00000022844.7|protein disulfide isomerase associated 5
mm10_v2_chr18_-_35662180_35662195	0.074884	Nkx2-9	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr9_-_107770945_107771007	0.0685621	Nkx2-9	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
mm10_v2_chr2_-_25575224_25575224	0.0609636	Nkx2-9	ENSMUST00000039156.6|Phpt1|ENSMUSG00000036504.6|phosphohistidine phosphatase 1
mm10_v2_chr7_-_35802968_35803007	0.0476145	Nkx2-9	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chr11_+_72607221_72607307	0.0437362	Nkx2-9	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr8_-_79399513_79399532	0.038091	Nkx2-9	ENSMUST00000066091.7|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000109885.1|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000066081.3|Smad1|ENSMUSG00000031681.8|SMAD family member 1
mm10_v2_chr6_+_122707489_122707608	0.0362482	Nkx2-9	ENSMUST00000112581.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000112580.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000012540.4|Nanog|ENSMUSG00000012396.6|Nanog homeobox
mm10_v2_chr6_+_42286709_42286856	0.0339098	Nkx2-9	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr1_-_128103016_128103053	0.0316137	Nkx2-9	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr15_+_58933774_58933836	0.0286414	Nkx2-9	ENSMUST00000022980.3|Ndufb9|ENSMUSG00000022354.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm10_v2_chr11_+_87699897_87699897	0.0102728	Nkx2-9	ENSMUST00000040089.4|Rnf43|ENSMUSG00000034177.9|ring finger protein 43
mm10_v2_chr6_+_35177386_35177430	0.00805673	Nkx2-9	ENSMUST00000043815.9|Nup205|ENSMUSG00000038759.9|nucleoporin 205
mm10_v2_chr12_-_24493656_24493656	0.0061433	Nkx2-9	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr7_+_44848991_44849114	0.00395273	Nkx2-9	ENSMUST00000107885.1|Akt1s1|ENSMUSG00000011096.10|AKT1 substrate 1 (proline-rich)
