mm10_v2_chrX_+_9199865_9199907	2.1716	Pax4	ENSMUST00000069763.2|Lancl3|ENSMUSG00000047344.9|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm10_v2_chrM_+_3906_3926	1.70715	Pax4	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr10_+_119992916_119992958	1.46826	Pax4	ENSMUST00000105261.2|Grip1|ENSMUSG00000034813.10|glutamate receptor interacting protein 1
mm10_v2_chr4_-_88033328_88033373	1.45023	Pax4	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr8_-_84773381_84773427	1.44941	Pax4	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr13_-_101768154_101768217	1.41624	Pax4	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chrX_+_143518671_143518703	1.39899	Pax4	ENSMUST00000134402.1|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr2_+_158666690_158666740	1.38379	Pax4	ENSMUST00000103116.3|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr2_+_158667119_158667130	1.36534	Pax4	ENSMUST00000045503.4|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr13_+_109632760_109632790	1.32941	Pax4	ENSMUST00000135275.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr10_-_64090265_64090297	1.30693	Pax4	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr12_+_71048338_71048356	1.30184	Pax4	ENSMUST00000135709.1|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr4_+_147132038_147132038	1.28537	Pax4	ENSMUST00000084149.3|Gm13139|ENSMUSG00000067916.3|predicted gene 13139
mm10_v2_chr2_-_125506385_125506408	1.26604	Pax4	ENSMUST00000028633.6|Fbn1|ENSMUSG00000027204.7|fibrillin 1
mm10_v2_chr4_+_146610961_146610961	1.22576	Pax4	ENSMUST00000130825.1|Gm13248|ENSMUSG00000063245.5|predicted gene 13248
mm10_v2_chr12_+_33314277_33314328	1.21402	Pax4	ENSMUST00000133549.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr10_+_107271827_107271850	1.14263	Pax4	ENSMUST00000020057.8|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans) 	ENSMUST00000105280.3|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans)
mm10_v2_chr10_-_64090241_64090262	1.10457	Pax4	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr10_-_62792243_62792368	1.0803	Pax4	ENSMUST00000020268.5|Ccar1|ENSMUSG00000020074.6|cell division cycle and apoptosis regulator 1
mm10_v2_chr9_-_101198999_101199080	1.03254	Pax4	ENSMUST00000066773.7|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr11_+_78499087_78499123	1.0169	Pax4	ENSMUST00000017488.4|Vtn|ENSMUSG00000017344.4|vitronectin
mm10_v2_chrX_+_143518576_143518599	1.01345	Pax4	ENSMUST00000033640.7|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr11_+_62574523_62574552	0.914711	Pax4	ENSMUST00000018651.7|Trpv2|ENSMUSG00000018507.10|transient receptor potential cation channel, subfamily V, member 2
mm10_v2_chrX_-_75875101_75875182	0.835251	Pax4	ENSMUST00000114059.3|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr2_-_65238625_65238643	0.829152	Pax4	ENSMUST00000112429.2|Cobll1|ENSMUSG00000034903.12|Cobl-like 1 	ENSMUST00000102726.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1 	ENSMUST00000112430.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1
mm10_v2_chr13_+_38204928_38204962	0.795943	Pax4	ENSMUST00000091641.5|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12) 	ENSMUST00000178564.1|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12)
mm10_v2_chr18_+_53862087_53862143	0.74912	Pax4	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr15_-_88978958_88979007	0.729485	Pax4	ENSMUST00000042594.6|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) 	ENSMUST00000109368.1|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm10_v2_chr5_-_121502980_121502980	0.727209	Pax4	ENSMUST00000079368.3|Adam1b|ENSMUSG00000062438.3|a disintegrin and metallopeptidase domain 1b
mm10_v2_chr3_+_20057802_20057857	0.702272	Pax4	ENSMUST00000002502.5|Hltf|ENSMUSG00000002428.6|helicase-like transcription factor
mm10_v2_chr2_-_33086366_33086447	0.698	Pax4	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chrX_-_9662950_9663003	0.680809	Pax4	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chr5_-_103100054_103100088	0.676283	Pax4	ENSMUST00000112848.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr9_+_32696005_32696121	0.617464	Pax4	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr17_+_17402672_17402771	0.613694	Pax4	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr19_-_32712287_32712336	0.590388	Pax4	ENSMUST00000070210.4|Atad1|ENSMUSG00000013662.5|ATPase family, AAA domain containing 1
mm10_v2_chr4_+_136284708_136284775	0.573902	Pax4	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr4_+_136284658_136284686	0.523016	Pax4	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr6_+_136518820_136518851	0.505221	Pax4	ENSMUST00000032335.6|Atf7ip|ENSMUSG00000030213.6|activating transcription factor 7 interacting protein
mm10_v2_chr7_+_58658181_58658294	0.504487	Pax4	ENSMUST00000168747.1|Atp10a|ENSMUSG00000025324.7|ATPase, class V, type 10A
mm10_v2_chr16_+_15637844_15637889	0.435258	Pax4	ENSMUST00000023352.8|Prkdc|ENSMUSG00000022672.8|protein kinase, DNA activated, catalytic polypeptide
mm10_v2_chr2_-_168741752_168741800	0.401365	Pax4	ENSMUST00000029060.4|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A
mm10_v2_chr7_-_45366714_45366840	0.383991	Pax4	ENSMUST00000107779.1|Ppfia3|ENSMUSG00000003863.10|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
mm10_v2_chrX_-_8206475_8206547	0.380884	Pax4	ENSMUST00000089403.3|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000077595.5|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000089402.3|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000082320.5|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila)
mm10_v2_chr2_-_168741898_168741973	0.361761	Pax4	ENSMUST00000109176.1|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A 	ENSMUST00000178504.1|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A
mm10_v2_chr16_-_36666067_36666086	0.349677	Pax4	ENSMUST00000089620.4|Cd86|ENSMUSG00000022901.7|CD86 antigen
mm10_v2_chrX_-_73097017_73097095	0.3405	Pax4	ENSMUST00000114524.2|Xlr3a|ENSMUSG00000057836.6|X-linked lymphocyte-regulated 3A 	ENSMUST00000074619.5|Xlr3a|ENSMUSG00000057836.6|X-linked lymphocyte-regulated 3A
mm10_v2_chr9_-_103222063_103222149	0.326273	Pax4	ENSMUST00000170904.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chr2_+_22895482_22895522	0.321093	Pax4	ENSMUST00000053729.7|Pdss1|ENSMUSG00000026784.8|prenyl (solanesyl) diphosphate synthase, subunit 1
mm10_v2_chr4_+_136357423_136357541	0.300883	Pax4	ENSMUST00000182167.1|Gm17388|ENSMUSG00000097588.2|predicted gene, 17388
mm10_v2_chr12_-_98577940_98578046	0.282226	Pax4	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr11_+_87127052_87127105	0.275542	Pax4	ENSMUST00000041282.6|Trim37|ENSMUSG00000018548.9|tripartite motif-containing 37
mm10_v2_chrM_+_11734_11757	0.275095	Pax4	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr10_+_90071095_90071117	0.260139	Pax4	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr5_+_124552845_124552903	0.258778	Pax4	ENSMUST00000071057.7|Ddx55|ENSMUSG00000029389.11|DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
mm10_v2_chr2_+_73271925_73271939	0.254206	Pax4	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chr7_+_7171330_7171373	0.249616	Pax4	ENSMUST00000051435.7|Zfp418|ENSMUSG00000034538.7|zinc finger protein 418
mm10_v2_chr17_+_26941420_26941464	0.245915	Pax4	ENSMUST00000081285.3|Syngap1|ENSMUSG00000067629.4|synaptic Ras GTPase activating protein 1 homolog (rat) 	ENSMUST00000177932.1|Syngap1|ENSMUSG00000067629.4|synaptic Ras GTPase activating protein 1 homolog (rat)
mm10_v2_chr2_+_22895583_22895629	0.234601	Pax4	ENSMUST00000152170.1|Pdss1|ENSMUSG00000026784.8|prenyl (solanesyl) diphosphate synthase, subunit 1
mm10_v2_chr19_+_53140430_53140449	0.20967	Pax4	ENSMUST00000111741.2|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr12_-_90738438_90738438	0.204863	Pax4	ENSMUST00000082432.3|Dio2|ENSMUSG00000007682.5|deiodinase, iodothyronine, type II
mm10_v2_chr15_+_78597047_78597121	0.196231	Pax4	ENSMUST00000043069.5|Cyth4|ENSMUSG00000018008.7|cytohesin 4
mm10_v2_chr13_-_55528511_55528561	0.193523	Pax4	ENSMUST00000047877.4|Dok3|ENSMUSG00000035711.4|docking protein 3
mm10_v2_chr4_+_156235999_156236051	0.170064	Pax4	ENSMUST00000179543.1|Noc2l|ENSMUSG00000095567.1|nucleolar complex associated 2 homolog (S. cerevisiae) 	ENSMUST00000179886.1|Noc2l|ENSMUSG00000095567.1|nucleolar complex associated 2 homolog (S. cerevisiae)
mm10_v2_chr15_+_80977765_80977845	0.151658	Pax4	ENSMUST00000139517.1|Sgsm3|ENSMUSG00000042303.10|small G protein signaling modulator 3 	ENSMUST00000042506.8|Sgsm3|ENSMUSG00000042303.10|small G protein signaling modulator 3 	ENSMUST00000137255.1|Sgsm3|ENSMUSG00000042303.10|small G protein signaling modulator 3
mm10_v2_chr1_-_88008520_88008556	0.145769	Pax4	ENSMUST00000040783.4|Usp40|ENSMUSG00000005501.8|ubiquitin specific peptidase 40
mm10_v2_chr9_-_58159201_58159239	0.13309	Pax4	ENSMUST00000041477.7|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr10_-_67548944_67549001	0.12898	Pax4	ENSMUST00000075686.4|Ado|ENSMUSG00000057134.4|2-aminoethanethiol (cysteamine) dioxygenase
mm10_v2_chr7_-_64925560_64925611	0.114774	Pax4	ENSMUST00000149851.1|Fam189a1|ENSMUSG00000030518.11|family with sequence similarity 189, member A1
mm10_v2_chr9_-_48835932_48835962	0.112339	Pax4	ENSMUST00000093852.3|Zbtb16|ENSMUSG00000066687.4|zinc finger and BTB domain containing 16
mm10_v2_chr13_-_66851513_66851513	0.107676	Pax4	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr18_+_58836721_58836764	0.0986363	Pax4	ENSMUST00000052907.5|Adamts19|ENSMUSG00000053441.4|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm10_v2_chr2_-_131328982_131328989	0.0952091	Pax4	ENSMUST00000110194.1|Rnf24|ENSMUSG00000048911.9|ring finger protein 24
mm10_v2_chrX_+_73192222_73192222	0.0920122	Pax4	ENSMUST00000101486.4|Xlr3b|ENSMUSG00000073125.4|X-linked lymphocyte-regulated 3B
mm10_v2_chr12_-_84218835_84218890	0.0835677	Pax4	ENSMUST00000046266.6|Elmsan1|ENSMUSG00000042507.8|ELM2 and Myb/SANT-like domain containing 1
mm10_v2_chr14_-_59395381_59395381	0.0621321	Pax4	ENSMUST00000166912.2|Phf11c|ENSMUSG00000091144.2|PHD finger protein 11C
mm10_v2_chr15_-_50889691_50889714	0.0447158	Pax4	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr7_-_144738520_144738597	0.0356542	Pax4	ENSMUST00000118556.2|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel 	ENSMUST00000033393.8|Ano1|ENSMUSG00000031075.11|anoctamin 1, calcium activated chloride channel
mm10_v2_chr2_+_122234749_122234822	0.0190253	Pax4	ENSMUST00000110551.3|Sord|ENSMUSG00000027227.7|sorbitol dehydrogenase
mm10_v2_chr6_+_47877204_47877204	0.0132419	Pax4	ENSMUST00000061890.7|Zfp282|ENSMUSG00000025821.9|zinc finger protein 282
mm10_v2_chr8_+_8689666_8689666	0.00625233	Pax4	ENSMUST00000179702.1|B930078G14Rik|ENSMUSG00000094143.1|RIKEN cDNA B930078G14 gene
