mm10_v2_chr6_-_93913678_93913719	6.23497	Pitx1	ENSMUST00000093769.5|Magi1|ENSMUSG00000045095.10|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm10_v2_chr13_-_97747399_97747414	4.89851	Pitx1	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr13_-_97747373_97747384	4.78244	Pitx1	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr16_-_46010212_46010223	4.47383	Pitx1	ENSMUST00000130481.1|Plcxd2|ENSMUSG00000087141.1|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm10_v2_chr8_+_127064022_127064086	4.19642	Pitx1	ENSMUST00000160272.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000079777.5|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162907.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr10_-_92165159_92165177	4.14122	Pitx1	ENSMUST00000182567.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000181604.2|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000181213.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr1_-_155232710_155232729	3.86381	Pitx1	ENSMUST00000035914.3|BC034090|ENSMUSG00000033722.3|cDNA sequence BC034090
mm10_v2_chr8_+_127063893_127063916	3.77089	Pitx1	ENSMUST00000162309.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr9_-_37433138_37433167	3.48933	Pitx1	ENSMUST00000115038.1|Robo3|ENSMUSG00000032128.8|roundabout homolog 3 (Drosophila)
mm10_v2_chr14_-_54926784_54926805	3.39402	Pitx1	ENSMUST00000022813.6|Efs|ENSMUSG00000022203.6|embryonal Fyn-associated substrate
mm10_v2_chr6_-_124840192_124840275	3.39303	Pitx1	ENSMUST00000024206.5|Gnb3|ENSMUSG00000023439.5|guanine nucleotide binding protein (G protein), beta 3
mm10_v2_chr2_+_102658640_102658669	3.37176	Pitx1	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr14_-_31640878_31640980	3.36601	Pitx1	ENSMUST00000167066.1|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1 	ENSMUST00000127204.2|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1 	ENSMUST00000022437.8|Hacl1|ENSMUSG00000021884.11|2-hydroxyacyl-CoA lyase 1
mm10_v2_chr4_-_155010984_155011026	3.31049	Pitx1	ENSMUST00000105631.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2 	ENSMUST00000139976.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2 	ENSMUST00000145662.2|Plch2|ENSMUSG00000029055.11|phospholipase C, eta 2
mm10_v2_chr4_-_41697040_41697089	3.17197	Pitx1	ENSMUST00000102962.3|Cntfr|ENSMUSG00000028444.11|ciliary neurotrophic factor receptor 	ENSMUST00000084701.5|Cntfr|ENSMUSG00000028444.11|ciliary neurotrophic factor receptor
mm10_v2_chr5_+_3343893_3343945	2.98153	Pitx1	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr7_-_4752972_4753094	2.86895	Pitx1	ENSMUST00000183971.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182173.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182738.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000184143.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182111.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000182048.1|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2 	ENSMUST00000063324.7|Cox6b2|ENSMUSG00000051811.8|cytochrome c oxidase subunit VIb polypeptide 2
mm10_v2_chr2_+_119325784_119325817	2.84505	Pitx1	ENSMUST00000102517.3|Dll4|ENSMUSG00000027314.6|delta-like 4 (Drosophila)
mm10_v2_chr17_+_75005523_75005568	2.83611	Pitx1	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr2_+_38341068_38341092	2.7844	Pitx1	ENSMUST00000133661.1|Lhx2|ENSMUSG00000000247.5|LIM homeobox protein 2
mm10_v2_chr19_-_47919269_47919305	2.74032	Pitx1	ENSMUST00000095998.5|Itprip|ENSMUSG00000079254.3|inositol 1,4,5-triphosphate receptor interacting protein
mm10_v2_chr5_+_3344194_3344312	2.67807	Pitx1	ENSMUST00000042410.4|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr2_-_18048784_18048822	2.65964	Pitx1	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr5_+_137641334_137641437	2.55759	Pitx1	ENSMUST00000177466.1|Sap25|ENSMUSG00000079165.4|sin3 associated polypeptide 	ENSMUST00000166099.2|Sap25|ENSMUSG00000079165.4|sin3 associated polypeptide
mm10_v2_chr7_-_15879844_15879968	2.55318	Pitx1	ENSMUST00000172758.1|Crx|ENSMUSG00000041578.9|cone-rod homeobox containing gene 	ENSMUST00000044434.6|Crx|ENSMUSG00000041578.9|cone-rod homeobox containing gene
mm10_v2_chr2_-_64097994_64098023	2.49082	Pitx1	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr4_+_116708687_116708704	2.48381	Pitx1	ENSMUST00000135499.1|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr14_-_118052235_118052253	2.31332	Pitx1	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr14_+_26122609_26122609	2.27814	Pitx1	ENSMUST00000100810.6|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr7_-_133015248_133015329	2.20188	Pitx1	ENSMUST00000169570.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr10_+_18407658_18407715	2.17319	Pitx1	ENSMUST00000037341.7|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr14_+_25983005_25983005	2.14299	Pitx1	ENSMUST00000049793.8|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr9_+_58134535_58134810	2.05441	Pitx1	ENSMUST00000128378.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000150820.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000167479.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000134450.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr19_-_12765447_12765632	1.96194	Pitx1	ENSMUST00000112933.1|Cntf|ENSMUSG00000079415.2|ciliary neurotrophic factor
mm10_v2_chr3_+_89520152_89520175	1.87747	Pitx1	ENSMUST00000000811.7|Kcnn3|ENSMUSG00000000794.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm10_v2_chr17_-_15375969_15375983	1.85577	Pitx1	ENSMUST00000014917.7|Dll1|ENSMUSG00000014773.7|delta-like 1 (Drosophila)
mm10_v2_chr10_-_80421847_80421876	1.83315	Pitx1	ENSMUST00000156244.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3
mm10_v2_chr4_-_42661893_42661893	1.79552	Pitx1	ENSMUST00000108006.3|Il11ra2|ENSMUSG00000078735.3|interleukin 11 receptor, alpha chain 2
mm10_v2_chr4_-_133968611_133968650	1.77473	Pitx1	ENSMUST00000102552.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr2_-_18048347_18048449	1.7003	Pitx1	ENSMUST00000066885.5|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr1_-_136230289_136230332	1.66231	Pitx1	ENSMUST00000150163.1|5730559C18Rik|ENSMUSG00000041605.10|RIKEN cDNA 5730559C18 gene 	ENSMUST00000144464.1|5730559C18Rik|ENSMUSG00000041605.10|RIKEN cDNA 5730559C18 gene
mm10_v2_chr9_+_50617516_50617561	1.66068	Pitx1	ENSMUST00000141366.1|Pih1d2|ENSMUSG00000000167.8|PIH1 domain containing 2
mm10_v2_chr10_-_127288851_127288918	1.64039	Pitx1	ENSMUST00000156208.1|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6 	ENSMUST00000026476.6|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6
mm10_v2_chr15_+_4375462_4375511	1.61116	Pitx1	ENSMUST00000061925.4|Plcxd3|ENSMUSG00000049148.8|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm10_v2_chr1_-_119648903_119649000	1.57461	Pitx1	ENSMUST00000163147.1|Epb4.1l5|ENSMUSG00000026383.8|erythrocyte protein band 4.1-like 5 	ENSMUST00000052404.6|Epb4.1l5|ENSMUSG00000026383.8|erythrocyte protein band 4.1-like 5 	ENSMUST00000027632.7|Epb4.1l5|ENSMUSG00000026383.8|erythrocyte protein band 4.1-like 5
mm10_v2_chr1_-_165934900_165935036	1.56581	Pitx1	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr3_+_55782500_55782521	1.56529	Pitx1	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr2_+_125068118_125068133	1.51342	Pitx1	ENSMUST00000070353.3|Slc24a5|ENSMUSG00000035183.8|solute carrier family 24, member 5
mm10_v2_chr7_+_101969796_101969843	1.50867	Pitx1	ENSMUST00000084852.5|Numa1|ENSMUSG00000066306.6|nuclear mitotic apparatus protein 1
mm10_v2_chr10_-_127288999_127289035	1.48476	Pitx1	ENSMUST00000119078.1|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6
mm10_v2_chr4_-_52497244_52497244	1.47682	Pitx1	ENSMUST00000114578.4|Vma21-ps|ENSMUSG00000061619.3|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae), pseudogene
mm10_v2_chr10_+_25408346_25408395	1.4646	Pitx1	ENSMUST00000092645.6|Epb4.1l2|ENSMUSG00000019978.9|erythrocyte protein band 4.1-like 2
mm10_v2_chr1_-_51915968_51916071	1.44269	Pitx1	ENSMUST00000046390.7|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr7_+_30553263_30553272	1.4417	Pitx1	ENSMUST00000044048.7|Hspb6|ENSMUSG00000036854.8|heat shock protein, alpha-crystallin-related, B6
mm10_v2_chr6_+_29361410_29361461	1.36121	Pitx1	ENSMUST00000156163.1|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr17_+_35861318_35861339	1.31281	Pitx1	ENSMUST00000074259.8|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein) 	ENSMUST00000174873.1|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein)
mm10_v2_chr8_+_78509319_78509399	1.30556	Pitx1	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr10_-_127189981_127190071	1.30117	Pitx1	ENSMUST00000019611.7|Arhgef25|ENSMUSG00000019467.7|Rho guanine nucleotide exchange factor (GEF) 25
mm10_v2_chr7_-_133123770_133123876	1.30064	Pitx1	ENSMUST00000164896.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000171968.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr5_-_134456702_134456785	1.2854	Pitx1	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr14_+_27039001_27039050	1.28324	Pitx1	ENSMUST00000035336.3|Il17rd|ENSMUSG00000040717.5|interleukin 17 receptor D
mm10_v2_chr11_+_23256566_23256589	1.25824	Pitx1	ENSMUST00000136235.1|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast)
mm10_v2_chr7_+_16781341_16781352	1.2551	Pitx1	ENSMUST00000108496.2|Slc1a5|ENSMUSG00000001918.11|solute carrier family 1 (neutral amino acid transporter), member 5
mm10_v2_chrX_+_7909542_7909542	1.24722	Pitx1	ENSMUST00000086274.2|Gm10490|ENSMUSG00000073290.1|predicted gene 10490
mm10_v2_chr13_+_3361029_3361029	1.24622	Pitx1	ENSMUST00000179981.1|Gm16505|ENSMUSG00000096107.1|predicted gene 16505
mm10_v2_chr6_+_136954521_136954529	1.24333	Pitx1	ENSMUST00000137768.1|Pde6h|ENSMUSG00000064330.7|phosphodiesterase 6H, cGMP-specific, cone, gamma
mm10_v2_chr4_-_140246751_140246793	1.23251	Pitx1	ENSMUST00000039331.8|Igsf21|ENSMUSG00000040972.8|immunoglobulin superfamily, member 21
mm10_v2_chr4_-_141053660_141053697	1.22657	Pitx1	ENSMUST00000040222.7|Crocc|ENSMUSG00000040860.10|ciliary rootlet coiled-coil, rootletin
mm10_v2_chr1_+_157458554_157458597	1.1724	Pitx1	ENSMUST00000046743.4|BC026585|ENSMUSG00000033488.5|cDNA sequence BC026585 	ENSMUST00000119891.1|BC026585|ENSMUSG00000033488.5|cDNA sequence BC026585
mm10_v2_chr9_-_100486788_100486788	1.16109	Pitx1	ENSMUST00000098458.3|Il20rb|ENSMUSG00000044244.12|interleukin 20 receptor beta
mm10_v2_chr13_+_113035111_113035387	1.16077	Pitx1	ENSMUST00000180543.1|Cdc20b|ENSMUSG00000078926.2|cell division cycle 20B 	ENSMUST00000181568.1|Cdc20b|ENSMUSG00000078926.2|cell division cycle 20B 	ENSMUST00000109244.2|Cdc20b|ENSMUSG00000078926.2|cell division cycle 20B 	ENSMUST00000181117.1|Cdc20b|ENSMUSG00000078926.2|cell division cycle 20B 	ENSMUST00000181741.1|Cdc20b|ENSMUSG00000078926.2|cell division cycle 20B
mm10_v2_chr5_-_5694559_5694581	1.13115	Pitx1	ENSMUST00000115426.2|Steap2|ENSMUSG00000015653.7|six transmembrane epithelial antigen of prostate 2
mm10_v2_chrX_-_100626568_100626611	1.12226	Pitx1	ENSMUST00000015812.5|Pdzd11|ENSMUSG00000015668.7|PDZ domain containing 11
mm10_v2_chrX_+_169879596_169879664	1.11109	Pitx1	ENSMUST00000112105.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000078947.5|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr6_+_3993776_3993797	1.10492	Pitx1	ENSMUST00000031673.5|Gngt1|ENSMUSG00000029663.5|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
mm10_v2_chr2_+_69670100_69670134	1.03545	Pitx1	ENSMUST00000100050.3|Klhl41|ENSMUSG00000075307.3|kelch-like 41
mm10_v2_chr3_+_88616133_88616151	0.995757	Pitx1	ENSMUST00000176500.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000177498.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr14_+_59201418_59201503	0.988501	Pitx1	ENSMUST00000140136.2|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000142326.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr3_-_84270782_84270794	0.977927	Pitx1	ENSMUST00000054990.4|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chr15_+_36179530_36179701	0.957276	Pitx1	ENSMUST00000171205.1|Spag1|ENSMUSG00000037617.5|sperm associated antigen 1
mm10_v2_chr9_+_35423582_35423589	0.939913	Pitx1	ENSMUST00000154652.1|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr5_+_64159429_64159451	0.937145	Pitx1	ENSMUST00000043893.6|Tbc1d1|ENSMUSG00000029174.12|TBC1 domain family, member 1
mm10_v2_chr4_+_99829437_99829500	0.917949	Pitx1	ENSMUST00000124547.1|Efcab7|ENSMUSG00000073791.5|EF-hand calcium binding domain 7 	ENSMUST00000106994.1|Efcab7|ENSMUSG00000073791.5|EF-hand calcium binding domain 7
mm10_v2_chr17_+_35861343_35861486	0.90537	Pitx1	ENSMUST00000172931.1|Nrm|ENSMUSG00000059791.8|nurim (nuclear envelope membrane protein)
mm10_v2_chr9_+_109875541_109875591	0.904592	Pitx1	ENSMUST00000094324.3|Cdc25a|ENSMUSG00000032477.9|cell division cycle 25A
mm10_v2_chr9_+_31030621_31030700	0.896577	Pitx1	ENSMUST00000115222.2|Zbtb44|ENSMUSG00000047412.9|zinc finger and BTB domain containing 44
mm10_v2_chr10_-_14718191_14718228	0.889442	Pitx1	ENSMUST00000020016.4|Gje1|ENSMUSG00000019867.4|gap junction protein, epsilon 1
mm10_v2_chr7_+_13398115_13398132	0.88142	Pitx1	ENSMUST00000005791.7|Cabp5|ENSMUSG00000005649.11|calcium binding protein 5
mm10_v2_chr10_-_6980376_6980398	0.845643	Pitx1	ENSMUST00000105617.1|Ipcef1|ENSMUSG00000064065.9|interaction protein for cytohesin exchange factors 1
mm10_v2_chr7_-_25398697_25398719	0.825985	Pitx1	ENSMUST00000105177.2|Lipe|ENSMUSG00000003123.9|lipase, hormone sensitive 	ENSMUST00000149349.1|Lipe|ENSMUSG00000003123.9|lipase, hormone sensitive
mm10_v2_chrX_+_74424534_74424629	0.823821	Pitx1	ENSMUST00000135165.1|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma 	ENSMUST00000114128.1|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma 	ENSMUST00000114133.2|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma 	ENSMUST00000004330.3|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma
mm10_v2_chr10_-_22149270_22149270	0.799207	Pitx1	ENSMUST00000179054.1|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene 	ENSMUST00000069372.6|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene
mm10_v2_chr6_+_122707489_122707608	0.76974	Pitx1	ENSMUST00000112581.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000112580.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000012540.4|Nanog|ENSMUSG00000012396.6|Nanog homeobox
mm10_v2_chr1_-_158958367_158958367	0.761962	Pitx1	ENSMUST00000159861.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr4_-_141053704_141053724	0.737143	Pitx1	ENSMUST00000102491.3|Crocc|ENSMUSG00000040860.10|ciliary rootlet coiled-coil, rootletin
mm10_v2_chr2_+_28506095_28506095	0.736253	Pitx1	ENSMUST00000074761.4|Gm10134|ENSMUSG00000063611.4|predicted gene 10134
mm10_v2_chr9_-_50617428_50617467	0.731986	Pitx1	ENSMUST00000131351.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000171462.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823
mm10_v2_chrX_+_74424632_74424671	0.72704	Pitx1	ENSMUST00000114129.2|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma 	ENSMUST00000132749.1|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma
mm10_v2_chr18_+_36281069_36281151	0.724547	Pitx1	ENSMUST00000051301.3|Pura|ENSMUSG00000043991.3|purine rich element binding protein A
mm10_v2_chr7_-_127725616_127725616	0.709964	Pitx1	ENSMUST00000076091.2|Ctf2|ENSMUSG00000060034.4|cardiotrophin 2
mm10_v2_chr1_-_44218952_44218961	0.707661	Pitx1	ENSMUST00000054801.3|Mettl21e|ENSMUSG00000046828.3|methyltransferase like 21E
mm10_v2_chr11_-_100472725_100472759	0.705362	Pitx1	ENSMUST00000056665.3|Klhl11|ENSMUSG00000048732.5|kelch-like 11
mm10_v2_chr11_-_51756378_51756618	0.703605	Pitx1	ENSMUST00000109092.1|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000064297.4|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000109097.2|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae)
mm10_v2_chr10_-_117376922_117376954	0.689882	Pitx1	ENSMUST00000177145.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6 	ENSMUST00000176670.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6
mm10_v2_chr12_+_37108533_37108546	0.686261	Pitx1	ENSMUST00000041183.5|Meox2|ENSMUSG00000036144.5|mesenchyme homeobox 2
mm10_v2_chr9_-_54501496_54501644	0.671784	Pitx1	ENSMUST00000118600.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2 	ENSMUST00000118163.1|Dmxl2|ENSMUSG00000041268.10|Dmx-like 2
mm10_v2_chr3_-_33083016_33083046	0.659686	Pitx1	ENSMUST00000078226.3|Pex5l|ENSMUSG00000027674.10|peroxisomal biogenesis factor 5-like 	ENSMUST00000108224.1|Pex5l|ENSMUSG00000027674.10|peroxisomal biogenesis factor 5-like
mm10_v2_chr18_-_15718046_15718046	0.651728	Pitx1	ENSMUST00000053017.6|Chst9|ENSMUSG00000047161.6|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
mm10_v2_chr14_+_67745229_67745269	0.650158	Pitx1	ENSMUST00000111095.2|Gnrh1|ENSMUSG00000015812.7|gonadotropin releasing hormone 1
mm10_v2_chr11_-_69398226_69398243	0.638167	Pitx1	ENSMUST00000050140.5|Tmem88|ENSMUSG00000045377.5|transmembrane protein 88
mm10_v2_chr14_+_64588112_64588120	0.599419	Pitx1	ENSMUST00000181808.1|A930011O12Rik|ENSMUSG00000097545.1|RIKEN cDNA A930011O12 gene
mm10_v2_chr11_+_82388900_82388900	0.596954	Pitx1	ENSMUST00000054245.4|Tmem132e|ENSMUSG00000020701.6|transmembrane protein 132E 	ENSMUST00000092852.2|Tmem132e|ENSMUSG00000020701.6|transmembrane protein 132E
mm10_v2_chr9_-_50617228_50617289	0.585812	Pitx1	ENSMUST00000147671.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000145139.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000155435.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823
mm10_v2_chr5_-_92435219_92435235	0.576771	Pitx1	ENSMUST00000038514.8|Nup54|ENSMUSG00000034826.8|nucleoporin 54
mm10_v2_chr8_-_111259192_111259221	0.576251	Pitx1	ENSMUST00000169020.1|Glg1|ENSMUSG00000003316.8|golgi apparatus protein 1 	ENSMUST00000003404.8|Glg1|ENSMUSG00000003316.8|golgi apparatus protein 1
mm10_v2_chr17_+_56770258_56770305	0.56905	Pitx1	ENSMUST00000168666.2|Prr22|ENSMUSG00000090273.2|proline rich 22
mm10_v2_chr17_-_35132050_35132050	0.558599	Pitx1	ENSMUST00000025249.6|Apom|ENSMUSG00000024391.7|apolipoprotein M
mm10_v2_chrM_+_8600_8616	0.553249	Pitx1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr18_+_60925644_60925725	0.535123	Pitx1	ENSMUST00000115297.1|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr11_+_116657106_116657117	0.525829	Pitx1	ENSMUST00000116318.2|Gm11744|ENSMUSG00000075410.6|predicted gene 11744
mm10_v2_chr1_+_167598384_167598411	0.5201	Pitx1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr17_+_7925990_7926006	0.517379	Pitx1	ENSMUST00000036370.7|Tagap|ENSMUSG00000033450.7|T cell activation Rho GTPase activating protein
mm10_v2_chr4_+_15881255_15881272	0.512529	Pitx1	ENSMUST00000029876.1|Calb1|ENSMUSG00000028222.2|calbindin 1
mm10_v2_chr14_+_52110939_52110953	0.511051	Pitx1	ENSMUST00000111600.4|Rpgrip1|ENSMUSG00000057132.9|retinitis pigmentosa GTPase regulator interacting protein 1
mm10_v2_chr9_-_99876147_99876193	0.493009	Pitx1	ENSMUST00000054819.8|Sox14|ENSMUSG00000053747.8|SRY-box containing gene 14
mm10_v2_chr1_-_170110491_170110532	0.491129	Pitx1	ENSMUST00000027985.2|Ddr2|ENSMUSG00000026674.3|discoidin domain receptor family, member 2
mm10_v2_chr1_+_167598450_167598480	0.483882	Pitx1	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr3_-_113630068_113630149	0.48333	Pitx1	ENSMUST00000092154.3|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3 	ENSMUST00000106536.1|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3 	ENSMUST00000106535.1|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3
mm10_v2_chr11_+_115900125_115900202	0.479671	Pitx1	ENSMUST00000142089.1|Smim5|ENSMUSG00000048442.9|small integral membrane protein 5 	ENSMUST00000131566.1|Smim5|ENSMUSG00000048442.9|small integral membrane protein 5
mm10_v2_chr5_+_137787769_137787807	0.479417	Pitx1	ENSMUST00000035852.7|Zcwpw1|ENSMUSG00000037108.7|zinc finger, CW type with PWWP domain 1
mm10_v2_chr4_+_144893127_144893151	0.449314	Pitx1	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr3_-_57294880_57294899	0.444238	Pitx1	ENSMUST00000171384.1|Tm4sf1|ENSMUSG00000027800.8|transmembrane 4 superfamily member 1
mm10_v2_chr11_+_4637734_4637789	0.436586	Pitx1	ENSMUST00000109930.2|Ascc2|ENSMUSG00000020412.10|activating signal cointegrator 1 complex subunit 2 	ENSMUST00000070257.7|Ascc2|ENSMUSG00000020412.10|activating signal cointegrator 1 complex subunit 2
mm10_v2_chr10_+_19951055_19951055	0.40295	Pitx1	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr1_-_191907527_191907527	0.39004	Pitx1	ENSMUST00000069573.5|1700034H15Rik|ENSMUSG00000055833.8|RIKEN cDNA 1700034H15 gene
mm10_v2_chr4_+_144893077_144893103	0.389338	Pitx1	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr2_+_91259822_91259860	0.385629	Pitx1	ENSMUST00000138470.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr8_-_11678728_11678754	0.38408	Pitx1	ENSMUST00000033906.4|1700016D06Rik|ENSMUSG00000031509.4|RIKEN cDNA 1700016D06 gene
mm10_v2_chr11_-_106920359_106920643	0.379397	Pitx1	ENSMUST00000167787.1|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2 	ENSMUST00000092517.2|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr3_+_129199960_129199975	0.378688	Pitx1	ENSMUST00000173645.2|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr6_-_122340200_122340244	0.372613	Pitx1	ENSMUST00000159384.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr11_+_95010277_95010293	0.370826	Pitx1	ENSMUST00000124735.1|Samd14|ENSMUSG00000047181.6|sterile alpha motif domain containing 14
mm10_v2_chr4_-_137766474_137766501	0.36884	Pitx1	ENSMUST00000139951.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr13_-_116309639_116309699	0.367923	Pitx1	ENSMUST00000036060.6|Isl1|ENSMUSG00000042258.7|ISL1 transcription factor, LIM/homeodomain
mm10_v2_chr11_+_69995874_69995897	0.366524	Pitx1	ENSMUST00000101526.2|Phf23|ENSMUSG00000018572.4|PHD finger protein 23
mm10_v2_chr11_+_69995777_69995870	0.364414	Pitx1	ENSMUST00000018716.3|Phf23|ENSMUSG00000018572.4|PHD finger protein 23
mm10_v2_chr5_+_8422831_8422906	0.347589	Pitx1	ENSMUST00000066921.3|Slc25a40|ENSMUSG00000054099.5|solute carrier family 25, member 40
mm10_v2_chr2_+_23068168_23068241	0.344775	Pitx1	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr10_-_117376955_117376978	0.34129	Pitx1	ENSMUST00000069168.6|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6 	ENSMUST00000176686.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6
mm10_v2_chr13_+_89540636_89540678	0.341001	Pitx1	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr11_-_100135928_100135954	0.331955	Pitx1	ENSMUST00000107411.2|Krt15|ENSMUSG00000054146.8|keratin 15
mm10_v2_chr5_+_8422908_8422988	0.299486	Pitx1	ENSMUST00000170496.1|Slc25a40|ENSMUSG00000054099.5|solute carrier family 25, member 40
mm10_v2_chr1_+_74542881_74542918	0.285282	Pitx1	ENSMUST00000113749.1|Plcd4|ENSMUSG00000026173.9|phospholipase C, delta 4 	ENSMUST00000067916.6|Plcd4|ENSMUSG00000026173.9|phospholipase C, delta 4 	ENSMUST00000113745.1|Plcd4|ENSMUSG00000026173.9|phospholipase C, delta 4 	ENSMUST00000113747.1|Plcd4|ENSMUSG00000026173.9|phospholipase C, delta 4 	ENSMUST00000113750.1|Plcd4|ENSMUSG00000026173.9|phospholipase C, delta 4
mm10_v2_chr15_+_102331700_102331777	0.270988	Pitx1	ENSMUST00000113682.2|Myg1|ENSMUSG00000001285.6|melanocyte proliferating gene 1 	ENSMUST00000001331.6|Myg1|ENSMUSG00000001285.6|melanocyte proliferating gene 1 	ENSMUST00000171244.1|Myg1|ENSMUSG00000001285.6|melanocyte proliferating gene 1
mm10_v2_chrX_+_169685191_169685250	0.264084	Pitx1	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr18_+_42394539_42394575	0.260674	Pitx1	ENSMUST00000025374.3|Pou4f3|ENSMUSG00000024497.3|POU domain, class 4, transcription factor 3
mm10_v2_chr5_+_75574916_75575001	0.25801	Pitx1	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr17_+_34969912_34969912	0.255815	Pitx1	ENSMUST00000173680.1|Gm20481|ENSMUSG00000092609.1|predicted gene 20481
mm10_v2_chr17_-_23586214_23586269	0.255119	Pitx1	ENSMUST00000115516.3|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr4_+_144892813_144892835	0.248816	Pitx1	ENSMUST00000105744.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3 	ENSMUST00000171001.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr17_+_35089229_35089307	0.247422	Pitx1	ENSMUST00000007251.7|Abhd16a|ENSMUSG00000007036.9|abhydrolase domain containing 16A
mm10_v2_chr2_-_101628930_101628954	0.247381	Pitx1	ENSMUST00000099682.2|B230118H07Rik|ENSMUSG00000027165.10|RIKEN cDNA B230118H07 gene
mm10_v2_chr11_+_88047693_88047727	0.242853	Pitx1	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr11_+_23256001_23256105	0.238772	Pitx1	ENSMUST00000020538.6|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast) 	ENSMUST00000109551.1|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast) 	ENSMUST00000102870.1|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast) 	ENSMUST00000102869.1|Xpo1|ENSMUSG00000020290.8|exportin 1, CRM1 homolog (yeast)
mm10_v2_chr9_+_107340593_107340648	0.237587	Pitx1	ENSMUST00000042581.2|6430571L13Rik|ENSMUSG00000037977.5|RIKEN cDNA 6430571L13 gene
mm10_v2_chr3_+_103809520_103809635	0.231926	Pitx1	ENSMUST00000076599.1|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1 	ENSMUST00000106824.1|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1 	ENSMUST00000106823.1|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1 	ENSMUST00000047285.2|Ap4b1|ENSMUSG00000032952.5|adaptor-related protein complex AP-4, beta 1
mm10_v2_chr1_-_13372434_13372457	0.216852	Pitx1	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr3_+_79884496_79884571	0.21535	Pitx1	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr6_+_4902913_4903014	0.208631	Pitx1	ENSMUST00000175889.1|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A 	ENSMUST00000168998.2|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr2_+_120476911_120476976	0.16763	Pitx1	ENSMUST00000110716.1|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000028748.6|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000090028.5|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000110719.2|Capn3|ENSMUSG00000079110.5|calpain 3
mm10_v2_chr11_+_87578384_87578470	0.164794	Pitx1	ENSMUST00000107962.1|Sept4|ENSMUSG00000020486.12|septin 4 	ENSMUST00000122067.1|Sept4|ENSMUSG00000020486.12|septin 4
mm10_v2_chr13_+_59585259_59585441	0.158085	Pitx1	ENSMUST00000168367.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000022038.7|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000166923.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm10_v2_chr2_-_167060417_167060430	0.146174	Pitx1	ENSMUST00000155281.1|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr7_-_98656530_98656600	0.137092	Pitx1	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr9_-_110101010_110101087	0.125101	Pitx1	ENSMUST00000062368.6|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr7_+_35802593_35802593	0.124504	Pitx1	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr2_-_9883993_9883993	0.117202	Pitx1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr9_-_108567336_108567359	0.0937714	Pitx1	ENSMUST00000074208.4|Ndufaf3|ENSMUSG00000070283.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
mm10_v2_chr10_+_94198955_94199043	0.093335	Pitx1	ENSMUST00000020209.9|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENSMUST00000179990.1|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm10_v2_chr1_+_87403705_87403726	0.089844	Pitx1	ENSMUST00000172736.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr4_+_84884418_84884465	0.0709772	Pitx1	ENSMUST00000169371.2|Cntln|ENSMUSG00000038070.9|centlein, centrosomal protein
mm10_v2_chr3_+_79884576_79884597	0.0707203	Pitx1	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr3_+_103058302_103058352	0.0693554	Pitx1	ENSMUST00000029445.6|Nras|ENSMUSG00000027852.8|neuroblastoma ras oncogene
mm10_v2_chrX_+_134756563_134756647	0.0618199	Pitx1	ENSMUST00000081834.3|Armcx3|ENSMUSG00000049047.5|armadillo repeat containing, X-linked 3 	ENSMUST00000086880.4|Armcx3|ENSMUSG00000049047.5|armadillo repeat containing, X-linked 3 	ENSMUST00000086884.4|Armcx3|ENSMUSG00000049047.5|armadillo repeat containing, X-linked 3
mm10_v2_chr2_-_23040137_23040174	0.0609795	Pitx1	ENSMUST00000091394.6|Abi1|ENSMUSG00000058835.8|abl-interactor 1 	ENSMUST00000093171.6|Abi1|ENSMUSG00000058835.8|abl-interactor 1
mm10_v2_chr19_-_6077183_6077229	0.0542821	Pitx1	ENSMUST00000025711.5|Vps51|ENSMUSG00000024797.6|vacuolar protein sorting 51 homolog (S. cerevisiae) 	ENSMUST00000160590.1|Vps51|ENSMUSG00000024797.6|vacuolar protein sorting 51 homolog (S. cerevisiae)
mm10_v2_chr16_-_91011093_91011113	0.0502612	Pitx1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr2_-_23040177_23040241	0.0426482	Pitx1	ENSMUST00000114544.3|Abi1|ENSMUSG00000058835.8|abl-interactor 1 	ENSMUST00000139038.1|Abi1|ENSMUSG00000058835.8|abl-interactor 1 	ENSMUST00000126112.1|Abi1|ENSMUSG00000058835.8|abl-interactor 1 	ENSMUST00000178908.1|Abi1|ENSMUSG00000058835.8|abl-interactor 1 	ENSMUST00000078977.7|Abi1|ENSMUSG00000058835.8|abl-interactor 1 	ENSMUST00000140164.1|Abi1|ENSMUSG00000058835.8|abl-interactor 1 	ENSMUST00000149719.1|Abi1|ENSMUSG00000058835.8|abl-interactor 1
mm10_v2_chr6_+_4903350_4903373	0.0368982	Pitx1	ENSMUST00000175962.1|Ppp1r9a|ENSMUSG00000032827.9|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm10_v2_chr13_+_63014934_63014934	0.0251601	Pitx1	ENSMUST00000091560.4|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr3_-_33082004_33082068	0.0231899	Pitx1	ENSMUST00000108225.3|Pex5l|ENSMUSG00000027674.10|peroxisomal biogenesis factor 5-like
mm10_v2_chr11_+_29718563_29718753	0.0226276	Pitx1	ENSMUST00000060992.5|Rtn4|ENSMUSG00000020458.10|reticulon 4
mm10_v2_chr11_-_22982090_22982382	0.0208635	Pitx1	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr16_-_34095983_34096060	0.0169941	Pitx1	ENSMUST00000114973.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114964.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr4_-_139833524_139833535	0.00885413	Pitx1	ENSMUST00000030508.7|Pax7|ENSMUSG00000028736.7|paired box gene 7
mm10_v2_chr2_+_14388434_14388512	0.00262265	Pitx1	ENSMUST00000133258.1|Slc39a12|ENSMUSG00000036949.10|solute carrier family 39 (zinc transporter), member 12
