mm10_v2_chr3_-_85722474_85722474	9.30307	Six3_Six1_Six2	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr13_+_94083490_94083511	6.06772	Six3_Six1_Six2	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr15_-_75894474_75894529	4.2657	Six3_Six1_Six2	ENSMUST00000023237.6|Naprt1|ENSMUSG00000022574.6|nicotinate phosphoribosyltransferase domain containing 1
mm10_v2_chr1_+_139454747_139454825	3.96357	Six3_Six1_Six2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr7_-_80115294_80115392	3.77787	Six3_Six1_Six2	ENSMUST00000107384.3|Idh2|ENSMUSG00000030541.10|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm10_v2_chr10_-_128180265_128180307	3.30781	Six3_Six1_Six2	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr9_+_65141154_65141198	3.23367	Six3_Six1_Six2	ENSMUST00000034961.4|Igdcc3|ENSMUSG00000032394.5|immunoglobulin superfamily, DCC subclass, member 3
mm10_v2_chr15_-_82244716_82244755	3.05875	Six3_Six1_Six2	ENSMUST00000089155.4|Cenpm|ENSMUSG00000068101.4|centromere protein M 	ENSMUST00000089157.3|Cenpm|ENSMUSG00000068101.4|centromere protein M
mm10_v2_chr5_+_139423151_139423186	2.28934	Six3_Six1_Six2	ENSMUST00000066211.4|Gper1|ENSMUSG00000053647.4|G protein-coupled estrogen receptor 1
mm10_v2_chr4_-_32950813_32950866	2.21856	Six3_Six1_Six2	ENSMUST00000084750.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084748.2|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr18_+_56432116_56432163	2.1088	Six3_Six1_Six2	ENSMUST00000070166.5|Gramd3|ENSMUSG00000001700.9|GRAM domain containing 3
mm10_v2_chrX_-_142966709_142966734	2.00379	Six3_Six1_Six2	ENSMUST00000041317.2|Ammecr1|ENSMUSG00000042225.3|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm10_v2_chr3_-_37724321_37724490	1.71961	Six3_Six1_Six2	ENSMUST00000108105.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000079755.4|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000099128.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148
mm10_v2_chr15_+_98571004_98571026	1.58886	Six3_Six1_Six2	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr2_+_131491764_131491943	1.47486	Six3_Six1_Six2	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr9_+_72958785_72958850	1.41979	Six3_Six1_Six2	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr2_+_106693185_106693278	1.33995	Six3_Six1_Six2	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr3_+_130068390_130068412	1.33739	Six3_Six1_Six2	ENSMUST00000076703.6|Gm9396|ENSMUSG00000063328.6|predicted gene 9396
mm10_v2_chr1_+_136467958_136467958	1.32884	Six3_Six1_Six2	ENSMUST00000047817.6|Kif14|ENSMUSG00000041498.7|kinesin family member 14
mm10_v2_chr7_-_126676357_126676383	1.3187	Six3_Six1_Six2	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr7_-_126676428_126676439	1.30825	Six3_Six1_Six2	ENSMUST00000106373.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr17_-_56716788_56716921	1.17255	Six3_Six1_Six2	ENSMUST00000067931.5|Vmac|ENSMUSG00000054723.5|vimentin-type intermediate filament associated coiled-coil protein
mm10_v2_chr3_+_94398517_94398538	1.13507	Six3_Six1_Six2	ENSMUST00000050975.3|Lingo4|ENSMUSG00000044505.3|leucine rich repeat and Ig domain containing 4
mm10_v2_chr1_-_118982551_118982606	1.0542	Six3_Six1_Six2	ENSMUST00000159678.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr7_-_141168671_141168936	1.03496	Six3_Six1_Six2	ENSMUST00000106033.3|Rnh1|ENSMUSG00000038650.8|ribonuclease/angiogenin inhibitor 1
mm10_v2_chrX_+_169685191_169685250	0.938709	Six3_Six1_Six2	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr17_-_56717681_56717709	0.929981	Six3_Six1_Six2	ENSMUST00000164907.1|Vmac|ENSMUSG00000054723.5|vimentin-type intermediate filament associated coiled-coil protein
mm10_v2_chr2_-_13271268_13271348	0.92416	Six3_Six1_Six2	ENSMUST00000137670.1|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1 	ENSMUST00000114791.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr4_+_133176336_133176371	0.914969	Six3_Six1_Six2	ENSMUST00000105912.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr3_+_88207308_88207328	0.912228	Six3_Six1_Six2	ENSMUST00000180582.1|Gm3764|ENSMUSG00000097156.1|predicted gene 3764
mm10_v2_chr2_-_13271419_13271437	0.89331	Six3_Six1_Six2	ENSMUST00000028059.2|Rsu1|ENSMUSG00000026727.4|Ras suppressor protein 1
mm10_v2_chr8_+_57455898_57455923	0.824741	Six3_Six1_Six2	ENSMUST00000034023.3|Scrg1|ENSMUSG00000031610.3|scrapie responsive gene 1
mm10_v2_chr8_-_4275886_4275915	0.819737	Six3_Six1_Six2	ENSMUST00000003029.7|Timm44|ENSMUSG00000002949.8|translocase of inner mitochondrial membrane 44
mm10_v2_chr6_+_115675983_115676004	0.815396	Six3_Six1_Six2	ENSMUST00000068960.9|D830050J10Rik|ENSMUSG00000055396.9|RIKEN cDNA D830050J10 gene
mm10_v2_chr6_+_38534823_38534872	0.769222	Six3_Six1_Six2	ENSMUST00000019833.4|1110001J03Rik|ENSMUSG00000019689.4|RIKEN cDNA 1110001J03 gene
mm10_v2_chr6_-_115675871_115675964	0.695796	Six3_Six1_Six2	ENSMUST00000112949.1|Raf1|ENSMUSG00000000441.11|v-raf-leukemia viral oncogene 1
mm10_v2_chr16_-_45724600_45724619	0.575675	Six3_Six1_Six2	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr7_+_30232310_30232350	0.544226	Six3_Six1_Six2	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr4_-_43030440_43030593	0.534225	Six3_Six1_Six2	ENSMUST00000135660.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr8_+_84831522_84831522	0.514496	Six3_Six1_Six2	ENSMUST00000036734.5|Gadd45gip1|ENSMUSG00000033751.5|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm10_v2_chr14_+_57798182_57798218	0.507186	Six3_Six1_Six2	ENSMUST00000111269.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
mm10_v2_chr15_-_76206309_76206357	0.41307	Six3_Six1_Six2	ENSMUST00000073418.6|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000171634.1|Plec|ENSMUSG00000022565.9|plectin 	ENSMUST00000076442.5|Plec|ENSMUSG00000022565.9|plectin
mm10_v2_chr11_-_69695521_69695713	0.40415	Six3_Six1_Six2	ENSMUST00000181261.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12
mm10_v2_chrX_-_74373218_74373249	0.400575	Six3_Six1_Six2	ENSMUST00000178691.1|Ubl4|ENSMUSG00000015290.9|ubiquitin-like 4 	ENSMUST00000114146.1|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr13_+_104229366_104229388	0.375012	Six3_Six1_Six2	ENSMUST00000022227.6|Cenpk|ENSMUSG00000021714.8|centromere protein K
mm10_v2_chr11_-_99230998_99231019	0.339482	Six3_Six1_Six2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr14_+_58893465_58893506	0.314411	Six3_Six1_Six2	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chrY_-_6237995_6237995	0.311649	Six3_Six1_Six2	ENSMUST00000177612.1|Gm21746|ENSMUSG00000094346.1|predicted gene, 21746
mm10_v2_chr17_+_25133385_25133434	0.259712	Six3_Six1_Six2	ENSMUST00000040729.2|Clcn7|ENSMUSG00000036636.3|chloride channel 7
mm10_v2_chr9_-_70503718_70503805	0.248341	Six3_Six1_Six2	ENSMUST00000034739.5|Rnf111|ENSMUSG00000032217.6|ring finger 111
mm10_v2_chr4_+_11758147_11758220	0.238552	Six3_Six1_Six2	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chr7_-_101903783_101903786	0.22459	Six3_Six1_Six2	ENSMUST00000106969.1|Tomt|ENSMUSG00000078630.1|transmembrane O-methyltransferase
mm10_v2_chr12_+_30584429_30584466	0.209422	Six3_Six1_Six2	ENSMUST00000057151.8|Tmem18|ENSMUSG00000043061.9|transmembrane protein 18
mm10_v2_chr10_+_24595623_24595780	0.209079	Six3_Six1_Six2	ENSMUST00000176228.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor 	ENSMUST00000129142.1|Ctgf|ENSMUSG00000019997.5|connective tissue growth factor
mm10_v2_chr12_+_84773262_84773319	0.199449	Six3_Six1_Six2	ENSMUST00000021667.5|Isca2|ENSMUSG00000021241.6|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
mm10_v2_chr9_+_98422961_98422961	0.198725	Six3_Six1_Six2	ENSMUST00000052068.9|Rbp1|ENSMUSG00000046402.9|retinol binding protein 1, cellular
mm10_v2_chr16_-_18235074_18235184	0.184666	Six3_Six1_Six2	ENSMUST00000076957.5|Zdhhc8|ENSMUSG00000060166.5|zinc finger, DHHC domain containing 8
mm10_v2_chr2_+_158028481_158028539	0.179183	Six3_Six1_Six2	ENSMUST00000103123.3|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B
mm10_v2_chr19_-_55315980_55316038	0.175197	Six3_Six1_Six2	ENSMUST00000076891.5|Zdhhc6|ENSMUSG00000024982.9|zinc finger, DHHC domain containing 6
mm10_v2_chr5_+_23787691_23787751	0.164674	Six3_Six1_Six2	ENSMUST00000030852.6|Rint1|ENSMUSG00000028999.9|RAD50 interactor 1 	ENSMUST00000120869.1|Rint1|ENSMUSG00000028999.9|RAD50 interactor 1 	ENSMUST00000117783.1|Rint1|ENSMUSG00000028999.9|RAD50 interactor 1 	ENSMUST00000115113.2|Rint1|ENSMUSG00000028999.9|RAD50 interactor 1
mm10_v2_chr8_-_106573461_106573462	0.161246	Six3_Six1_Six2	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
mm10_v2_chr1_-_119504736_119504795	0.155969	Six3_Six1_Six2	ENSMUST00000004565.8|Ralb|ENSMUSG00000004451.8|v-ral simian leukemia viral oncogene homolog B (ras related)
mm10_v2_chr8_+_69832633_69832712	0.139913	Six3_Six1_Six2	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr4_-_116651644_116651680	0.139018	Six3_Six1_Six2	ENSMUST00000030455.8|Akr1a1|ENSMUSG00000028692.8|aldo-keto reductase family 1, member A1 (aldehyde reductase)
mm10_v2_chr5_+_21543525_21543590	0.114565	Six3_Six1_Six2	ENSMUST00000035651.4|Lrrc17|ENSMUSG00000039883.4|leucine rich repeat containing 17
mm10_v2_chr11_-_87826023_87826113	0.110707	Six3_Six1_Six2	ENSMUST00000103177.3|Lpo|ENSMUSG00000009356.6|lactoperoxidase
mm10_v2_chr9_+_119341487_119341515	0.103599	Six3_Six1_Six2	ENSMUST00000175743.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A 	ENSMUST00000176397.1|Acaa1a|ENSMUSG00000036138.10|acetyl-Coenzyme A acyltransferase 1A
mm10_v2_chr17_+_56717759_56717819	0.0988803	Six3_Six1_Six2	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr8_-_22653406_22653458	0.0711928	Six3_Six1_Six2	ENSMUST00000033938.5|Polb|ENSMUSG00000031536.5|polymerase (DNA directed), beta
mm10_v2_chr6_+_48537560_48537622	0.0620826	Six3_Six1_Six2	ENSMUST00000040361.5|Atp6v0e2|ENSMUSG00000039347.5|ATPase, H+ transporting, lysosomal V0 subunit E2
mm10_v2_chr10_-_78487842_78487842	0.0570559	Six3_Six1_Six2	ENSMUST00000069431.4|Gm9978|ENSMUSG00000055704.4|predicted gene 9978
mm10_v2_chr7_+_43690418_43690418	0.0288315	Six3_Six1_Six2	ENSMUST00000056329.6|Klk14|ENSMUSG00000044737.6|kallikrein related-peptidase 14
mm10_v2_chrX_-_74373260_74373349	0.0232232	Six3_Six1_Six2	ENSMUST00000073067.4|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3 	ENSMUST00000037967.5|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr19_+_8764934_8765034	0.0176119	Six3_Six1_Six2	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr8_+_71951038_71951130	0.0152688	Six3_Six1_Six2	ENSMUST00000131237.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000136516.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000109997.2|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961 	ENSMUST00000132848.1|Zfp961|ENSMUSG00000052446.10|zinc finger protein 961
mm10_v2_chr17_-_36951636_36951741	0.0084422	Six3_Six1_Six2	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr14_+_57798156_57798180	0.00560269	Six3_Six1_Six2	ENSMUST00000128764.1|Sap18|ENSMUSG00000021963.10|Sin3-associated polypeptide 18
