mm10_v2_chr11_-_106715251_106715394	7.46331	Sox6_Sox9	ENSMUST00000080853.4|Pecam1|ENSMUSG00000020717.13|platelet/endothelial cell adhesion molecule 1 	ENSMUST00000183610.1|Pecam1|ENSMUSG00000020717.13|platelet/endothelial cell adhesion molecule 1 	ENSMUST00000103069.3|Pecam1|ENSMUSG00000020717.13|platelet/endothelial cell adhesion molecule 1 	ENSMUST00000106796.2|Pecam1|ENSMUSG00000020717.13|platelet/endothelial cell adhesion molecule 1
mm10_v2_chr3_-_10208569_10208586	4.06317	Sox6_Sox9	ENSMUST00000029041.4|Fabp4|ENSMUSG00000062515.2|fatty acid binding protein 4, adipocyte
mm10_v2_chr11_-_114795888_114795903	4.03311	Sox6_Sox9	ENSMUST00000000206.3|Btbd17|ENSMUSG00000000202.3|BTB (POZ) domain containing 17
mm10_v2_chr13_-_97747373_97747384	3.94099	Sox6_Sox9	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr13_-_97747399_97747414	3.85955	Sox6_Sox9	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr8_-_11312731_11312826	3.35907	Sox6_Sox9	ENSMUST00000033898.9|Col4a1|ENSMUSG00000031502.9|collagen, type IV, alpha 1
mm10_v2_chr1_+_135729147_135729234	3.01516	Sox6_Sox9	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr15_-_91049823_91049948	2.70877	Sox6_Sox9	ENSMUST00000088614.5|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000100304.4|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000067205.8|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109288.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A 	ENSMUST00000109287.2|Kif21a|ENSMUSG00000022629.10|kinesin family member 21A
mm10_v2_chr5_+_3344194_3344312	2.59637	Sox6_Sox9	ENSMUST00000042410.4|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr15_+_75596645_75596662	2.55102	Sox6_Sox9	ENSMUST00000023243.4|Gpihbp1|ENSMUSG00000022579.4|GPI-anchored HDL-binding protein 1
mm10_v2_chr1_-_72874877_72874891	2.50425	Sox6_Sox9	ENSMUST00000027377.8|Igfbp5|ENSMUSG00000026185.8|insulin-like growth factor binding protein 5
mm10_v2_chr15_+_25622525_25622558	2.43807	Sox6_Sox9	ENSMUST00000110457.1|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000137601.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr3_+_34649987_34650005	2.36733	Sox6_Sox9	ENSMUST00000099151.2|Sox2|ENSMUSG00000074637.4|SRY-box containing gene 2
mm10_v2_chrX_-_18461371_18461402	2.33945	Sox6_Sox9	ENSMUST00000044188.4|4930578C19Rik|ENSMUSG00000037358.6|RIKEN cDNA 4930578C19 gene
mm10_v2_chr9_-_32541589_32541602	2.26872	Sox6_Sox9	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr5_-_17835857_17835896	2.25165	Sox6_Sox9	ENSMUST00000082367.6|Cd36|ENSMUSG00000002944.9|CD36 antigen
mm10_v2_chr9_-_72111651_72111712	2.18695	Sox6_Sox9	ENSMUST00000185117.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr2_+_146221921_146221921	2.17043	Sox6_Sox9	ENSMUST00000089257.4|Insm1|ENSMUSG00000068154.4|insulinoma-associated 1
mm10_v2_chr5_+_3343893_3343945	2.16917	Sox6_Sox9	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr6_+_17463749_17463809	2.16195	Sox6_Sox9	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr12_-_34528844_34528904	2.13823	Sox6_Sox9	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr9_-_79718631_79718678	1.99361	Sox6_Sox9	ENSMUST00000180083.1|Col12a1|ENSMUSG00000032332.11|collagen, type XII, alpha 1
mm10_v2_chr6_+_34598530_34598587	1.99347	Sox6_Sox9	ENSMUST00000115027.1|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000115026.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr8_+_11312805_11312887	1.98807	Sox6_Sox9	ENSMUST00000033899.7|Col4a2|ENSMUSG00000031503.7|collagen, type IV, alpha 2
mm10_v2_chr5_-_105343929_105343929	1.95787	Sox6_Sox9	ENSMUST00000183149.1|Gbp11|ENSMUSG00000098049.1|guanylate binding protein 11
mm10_v2_chr1_-_155146755_155146789	1.90975	Sox6_Sox9	ENSMUST00000027744.8|Mr1|ENSMUSG00000026471.8|major histocompatibility complex, class I-related
mm10_v2_chr2_-_160367057_160367073	1.86705	Sox6_Sox9	ENSMUST00000099126.3|Mafb|ENSMUSG00000074622.3|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm10_v2_chr9_-_79718518_79718592	1.85898	Sox6_Sox9	ENSMUST00000071750.6|Col12a1|ENSMUSG00000032332.11|collagen, type XII, alpha 1
mm10_v2_chr6_+_34598500_34598529	1.77733	Sox6_Sox9	ENSMUST00000079391.3|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000142512.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr9_-_79718720_79718752	1.76788	Sox6_Sox9	ENSMUST00000121227.1|Col12a1|ENSMUSG00000032332.11|collagen, type XII, alpha 1
mm10_v2_chr6_+_53573364_53573394	1.65687	Sox6_Sox9	ENSMUST00000047450.7|Creb5|ENSMUSG00000053007.6|cAMP responsive element binding protein 5
mm10_v2_chr12_+_119945957_119946133	1.63523	Sox6_Sox9	ENSMUST00000058644.8|Tmem196|ENSMUSG00000048004.8|transmembrane protein 196
mm10_v2_chr9_-_72111172_72111225	1.61161	Sox6_Sox9	ENSMUST00000183992.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr8_-_84773381_84773427	1.54775	Sox6_Sox9	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr6_+_17463826_17463829	1.51778	Sox6_Sox9	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr8_-_71395794_71395821	1.4649	Sox6_Sox9	ENSMUST00000049184.7|Ushbp1|ENSMUSG00000034911.7|Usher syndrome 1C binding protein 1
mm10_v2_chr4_-_118490030_118490063	1.34976	Sox6_Sox9	ENSMUST00000047421.5|Tie1|ENSMUSG00000033191.8|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm10_v2_chr3_-_116129615_116129688	1.32619	Sox6_Sox9	ENSMUST00000029574.8|Vcam1|ENSMUSG00000027962.10|vascular cell adhesion molecule 1
mm10_v2_chr7_+_45216671_45216695	1.32349	Sox6_Sox9	ENSMUST00000134420.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr6_+_65671590_65671618	1.29773	Sox6_Sox9	ENSMUST00000054351.4|Ndnf|ENSMUSG00000049001.4|neuron-derived neurotrophic factor
mm10_v2_chr6_+_86404257_86404319	1.29663	Sox6_Sox9	ENSMUST00000095752.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000130967.1|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr6_+_86404219_86404240	1.27518	Sox6_Sox9	ENSMUST00000095754.3|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000095753.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr12_-_58269162_58269258	1.26108	Sox6_Sox9	ENSMUST00000062254.2|Clec14a|ENSMUSG00000045930.2|C-type lectin domain family 14, member a
mm10_v2_chr6_+_125552948_125552980	1.25888	Sox6_Sox9	ENSMUST00000112254.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000112253.1|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog 	ENSMUST00000001995.7|Vwf|ENSMUSG00000001930.11|Von Willebrand factor homolog
mm10_v2_chr2_+_4400958_4400975	1.25436	Sox6_Sox9	ENSMUST00000075767.7|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr13_-_41358990_41359006	1.2272	Sox6_Sox9	ENSMUST00000163623.1|Nedd9|ENSMUSG00000021365.8|neural precursor cell expressed, developmentally down-regulated gene 9
mm10_v2_chr2_+_25180737_25180764	1.22572	Sox6_Sox9	ENSMUST00000104999.2|Nrarp|ENSMUSG00000078202.2|Notch-regulated ankyrin repeat protein
mm10_v2_chr6_+_83137089_83137121	1.20105	Sox6_Sox9	ENSMUST00000121093.1|Rtkn|ENSMUSG00000034930.9|rhotekin 	ENSMUST00000087938.4|Rtkn|ENSMUSG00000034930.9|rhotekin
mm10_v2_chr5_+_66968559_66968577	1.20002	Sox6_Sox9	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr11_+_94044194_94044238	1.17933	Sox6_Sox9	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr7_-_132813095_132813162	1.16558	Sox6_Sox9	ENSMUST00000106165.1|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr12_-_119238794_119238863	1.1544	Sox6_Sox9	ENSMUST00000026360.8|Itgb8|ENSMUSG00000025321.8|integrin beta 8
mm10_v2_chr8_+_25518757_25518772	1.14495	Sox6_Sox9	ENSMUST00000178276.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1 	ENSMUST00000179592.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1
mm10_v2_chr2_+_102658640_102658669	1.14265	Sox6_Sox9	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr11_+_94044241_94044273	1.13993	Sox6_Sox9	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr2_-_33942111_33942151	1.13079	Sox6_Sox9	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr6_-_31563978_31563989	1.1292	Sox6_Sox9	ENSMUST00000026698.7|Podxl|ENSMUSG00000025608.9|podocalyxin-like
mm10_v2_chr14_-_118052235_118052253	1.12383	Sox6_Sox9	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr8_+_25518783_25518801	1.11984	Sox6_Sox9	ENSMUST00000084027.5|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1 	ENSMUST00000117179.2|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1
mm10_v2_chr6_+_86404336_86404473	1.11508	Sox6_Sox9	ENSMUST00000113713.2|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1 	ENSMUST00000113708.1|Tia1|ENSMUSG00000071337.5|cytotoxic granule-associated RNA binding protein 1
mm10_v2_chr8_+_45628176_45628219	1.10251	Sox6_Sox9	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr2_+_180598219_180598226	1.07901	Sox6_Sox9	ENSMUST00000103059.1|Col9a3|ENSMUSG00000027570.9|collagen, type IX, alpha 3
mm10_v2_chr3_+_90541146_90541173	1.07601	Sox6_Sox9	ENSMUST00000107333.1|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16 	ENSMUST00000107331.1|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16 	ENSMUST00000098910.2|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16
mm10_v2_chr12_+_29528382_29528468	1.04028	Sox6_Sox9	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr2_+_105682463_105682547	1.03107	Sox6_Sox9	ENSMUST00000140173.1|Pax6|ENSMUSG00000027168.15|paired box gene 6 	ENSMUST00000135412.1|Pax6|ENSMUSG00000027168.15|paired box gene 6 	ENSMUST00000138365.1|Pax6|ENSMUSG00000027168.15|paired box gene 6 	ENSMUST00000145744.1|Pax6|ENSMUSG00000027168.15|paired box gene 6
mm10_v2_chr4_-_118489755_118489777	1.01156	Sox6_Sox9	ENSMUST00000184261.1|Tie1|ENSMUSG00000033191.8|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm10_v2_chr18_+_11633276_11633357	1.00354	Sox6_Sox9	ENSMUST00000115861.2|Rbbp8|ENSMUSG00000041238.9|retinoblastoma binding protein 8
mm10_v2_chr5_+_48242549_48242549	0.997146	Sox6_Sox9	ENSMUST00000172493.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila)
mm10_v2_chr18_-_23038656_23038676	0.98054	Sox6_Sox9	ENSMUST00000081423.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr4_+_94739276_94739300	0.952349	Sox6_Sox9	ENSMUST00000073939.6|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase 	ENSMUST00000102798.1|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase
mm10_v2_chr17_-_68004075_68004140	0.947452	Sox6_Sox9	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr11_+_88068242_88068289	0.935064	Sox6_Sox9	ENSMUST00000018521.4|Vezf1|ENSMUSG00000018377.4|vascular endothelial zinc finger 1
mm10_v2_chr1_+_59482133_59482179	0.886906	Sox6_Sox9	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chr7_-_132813528_132813667	0.884375	Sox6_Sox9	ENSMUST00000097999.2|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr10_+_116301374_116301428	0.87243	Sox6_Sox9	ENSMUST00000092167.5|Ptprb|ENSMUSG00000020154.9|protein tyrosine phosphatase, receptor type, B
mm10_v2_chr11_-_49187159_49187195	0.869998	Sox6_Sox9	ENSMUST00000046522.6|Btnl9|ENSMUSG00000040283.8|butyrophilin-like 9
mm10_v2_chr7_-_126676357_126676383	0.826468	Sox6_Sox9	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr7_+_96210107_96210183	0.806401	Sox6_Sox9	ENSMUST00000138760.1|Tenm4|ENSMUSG00000048078.10|teneurin transmembrane protein 4
mm10_v2_chr2_-_104816696_104816792	0.79909	Sox6_Sox9	ENSMUST00000117237.1|Qser1|ENSMUSG00000074994.4|glutamine and serine rich 1
mm10_v2_chr2_+_102659213_102659281	0.795748	Sox6_Sox9	ENSMUST00000111213.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr9_-_72111755_72111821	0.794995	Sox6_Sox9	ENSMUST00000183492.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184523.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000034755.6|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr7_-_103813913_103813996	0.791577	Sox6_Sox9	ENSMUST00000098192.3|Hbb-bt|ENSMUSG00000073940.3|hemoglobin, beta adult t chain
mm10_v2_chr7_-_126676428_126676439	0.779282	Sox6_Sox9	ENSMUST00000106373.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr5_+_66968416_66968447	0.775063	Sox6_Sox9	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr1_-_119837613_119837673	0.772316	Sox6_Sox9	ENSMUST00000064091.5|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr1_+_160906372_160906460	0.743131	Sox6_Sox9	ENSMUST00000161609.1|Rc3h1|ENSMUSG00000040423.4|RING CCCH (C3H) domains 1
mm10_v2_chr1_-_119837338_119837386	0.736118	Sox6_Sox9	ENSMUST00000163435.1|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr6_+_17463927_17464071	0.727313	Sox6_Sox9	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr10_+_67096456_67096534	0.724285	Sox6_Sox9	ENSMUST00000174317.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr15_+_6386598_6386785	0.721591	Sox6_Sox9	ENSMUST00000080880.5|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110664.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000110663.2|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000161812.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000160134.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr10_-_62792243_62792368	0.719175	Sox6_Sox9	ENSMUST00000020268.5|Ccar1|ENSMUSG00000020074.6|cell division cycle and apoptosis regulator 1
mm10_v2_chr1_-_119836999_119837139	0.717162	Sox6_Sox9	ENSMUST00000163621.1|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4 	ENSMUST00000168303.1|Ptpn4|ENSMUSG00000026384.7|protein tyrosine phosphatase, non-receptor type 4
mm10_v2_chr15_-_10713537_10713544	0.690064	Sox6_Sox9	ENSMUST00000090339.3|Rai14|ENSMUSG00000022246.7|retinoic acid induced 14
mm10_v2_chr5_-_138155694_138155744	0.688264	Sox6_Sox9	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr3_-_95891938_95892005	0.687295	Sox6_Sox9	ENSMUST00000036360.6|BC028528|ENSMUSG00000038543.7|cDNA sequence BC028528 	ENSMUST00000090476.3|BC028528|ENSMUSG00000038543.7|cDNA sequence BC028528
mm10_v2_chr18_-_15063560_15063617	0.683875	Sox6_Sox9	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr11_-_68957445_68957485	0.683505	Sox6_Sox9	ENSMUST00000108671.1|Arhgef15|ENSMUSG00000052921.7|Rho guanine nucleotide exchange factor (GEF) 15
mm10_v2_chr17_-_35000848_35000958	0.680344	Sox6_Sox9	ENSMUST00000166828.3|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr2_-_20968526_20968625	0.677942	Sox6_Sox9	ENSMUST00000141298.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21 	ENSMUST00000125783.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr1_-_64122256_64122321	0.670739	Sox6_Sox9	ENSMUST00000135075.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr7_+_75455534_75455629	0.664465	Sox6_Sox9	ENSMUST00000147005.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13 	ENSMUST00000166315.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr14_+_54431597_54431673	0.652371	Sox6_Sox9	ENSMUST00000089688.4|Mmp14|ENSMUSG00000000957.8|matrix metallopeptidase 14 (membrane-inserted)
mm10_v2_chr4_-_34882919_34882964	0.647742	Sox6_Sox9	ENSMUST00000098163.2|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292 	ENSMUST00000047950.5|Zfp292|ENSMUSG00000039967.8|zinc finger protein 292
mm10_v2_chr4_+_122995944_122995958	0.641762	Sox6_Sox9	ENSMUST00000106252.2|Mycl|ENSMUSG00000028654.7|v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)
mm10_v2_chrX_-_16911774_16911774	0.639344	Sox6_Sox9	ENSMUST00000040134.7|Ndp|ENSMUSG00000040138.7|Norrie disease (pseudoglioma) (human)
mm10_v2_chr4_-_91399984_91400007	0.639296	Sox6_Sox9	ENSMUST00000102799.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr10_-_24836165_24836195	0.638926	Sox6_Sox9	ENSMUST00000020169.7|Enpp3|ENSMUSG00000019989.7|ectonucleotide pyrophosphatase/phosphodiesterase 3
mm10_v2_chr10_-_30655859_30655868	0.635958	Sox6_Sox9	ENSMUST00000092610.4|Ncoa7|ENSMUSG00000039697.9|nuclear receptor coactivator 7
mm10_v2_chr9_+_109095427_109095453	0.621837	Sox6_Sox9	ENSMUST00000072093.6|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr17_-_24644933_24644976	0.614168	Sox6_Sox9	ENSMUST00000019684.5|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr10_-_83534130_83534141	0.605287	Sox6_Sox9	ENSMUST00000020497.7|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr1_-_163289214_163289235	0.605017	Sox6_Sox9	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr4_+_148130883_148130915	0.593066	Sox6_Sox9	ENSMUST00000084129.2|Mad2l2|ENSMUSG00000029003.5|MAD2 mitotic arrest deficient-like 2
mm10_v2_chr4_+_137993016_137993036	0.590695	Sox6_Sox9	ENSMUST00000105830.2|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000084215.5|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000058133.3|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000139759.1|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3
mm10_v2_chr19_+_55741810_55741842	0.574841	Sox6_Sox9	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr18_+_37484955_37485028	0.572702	Sox6_Sox9	ENSMUST00000053856.4|Pcdhb17|ENSMUSG00000046387.4|protocadherin beta 17
mm10_v2_chr12_+_29938036_29938059	0.566561	Sox6_Sox9	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr10_-_17947997_17948098	0.556114	Sox6_Sox9	ENSMUST00000037879.6|Heca|ENSMUSG00000039879.8|headcase homolog (Drosophila)
mm10_v2_chr6_+_48593883_48593900	0.555097	Sox6_Sox9	ENSMUST00000154010.1|Repin1|ENSMUSG00000052751.10|replication initiator 1 	ENSMUST00000163452.1|Repin1|ENSMUSG00000052751.10|replication initiator 1 	ENSMUST00000118229.1|Repin1|ENSMUSG00000052751.10|replication initiator 1 	ENSMUST00000009420.8|Repin1|ENSMUSG00000052751.10|replication initiator 1
mm10_v2_chr14_-_16575456_16575501	0.553858	Sox6_Sox9	ENSMUST00000063750.6|Rarb|ENSMUSG00000017491.8|retinoic acid receptor, beta
mm10_v2_chrX_-_23285532_23285578	0.550493	Sox6_Sox9	ENSMUST00000115319.2|Klhl13|ENSMUSG00000036782.7|kelch-like 13
mm10_v2_chr4_+_122996035_122996099	0.547996	Sox6_Sox9	ENSMUST00000030407.7|Mycl|ENSMUSG00000028654.7|v-myc myelocytomatosis viral oncogene homolog, lung carcinoma derived (avian)
mm10_v2_chr11_+_94044331_94044365	0.547922	Sox6_Sox9	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr1_-_56972437_56972502	0.54427	Sox6_Sox9	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr2_-_161109017_161109027	0.544029	Sox6_Sox9	ENSMUST00000039782.7|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6 	ENSMUST00000134178.1|Chd6|ENSMUSG00000057133.8|chromodomain helicase DNA binding protein 6
mm10_v2_chr15_-_88978958_88979007	0.538203	Sox6_Sox9	ENSMUST00000042594.6|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) 	ENSMUST00000109368.1|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm10_v2_chrX_+_77511002_77511100	0.537683	Sox6_Sox9	ENSMUST00000088217.5|Tbl1x|ENSMUSG00000025246.7|transducin (beta)-like 1 X-linked
mm10_v2_chr6_+_48593927_48593952	0.533536	Sox6_Sox9	ENSMUST00000135151.1|Repin1|ENSMUSG00000052751.10|replication initiator 1
mm10_v2_chr4_+_108460000_108460030	0.530103	Sox6_Sox9	ENSMUST00000097925.2|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr3_-_123690806_123690847	0.527794	Sox6_Sox9	ENSMUST00000154668.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr16_+_23226014_23226077	0.519125	Sox6_Sox9	ENSMUST00000178797.1|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr9_+_122923050_122923099	0.51856	Sox6_Sox9	ENSMUST00000051667.7|Zfp105|ENSMUSG00000057895.5|zinc finger protein 105 	ENSMUST00000148851.1|Zfp105|ENSMUSG00000057895.5|zinc finger protein 105
mm10_v2_chr2_+_3713478_3713500	0.511323	Sox6_Sox9	ENSMUST00000115053.2|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr4_+_137993445_137993474	0.505658	Sox6_Sox9	ENSMUST00000105831.2|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3 	ENSMUST00000084214.5|Eif4g3|ENSMUSG00000028760.10|eukaryotic translation initiation factor 4 gamma, 3
mm10_v2_chr14_-_68655804_68655842	0.502254	Sox6_Sox9	ENSMUST00000111072.1|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28 	ENSMUST00000022642.5|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28
mm10_v2_chr10_+_29143996_29144126	0.501735	Sox6_Sox9	ENSMUST00000092629.2|Soga3|ENSMUSG00000038916.6|SOGA family member 3
mm10_v2_chr12_+_51348370_51348406	0.497588	Sox6_Sox9	ENSMUST00000121521.1|G2e3|ENSMUSG00000035293.7|G2/M-phase specific E3 ubiquitin ligase
mm10_v2_chr2_+_4559742_4559756	0.497436	Sox6_Sox9	ENSMUST00000176828.1|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr11_+_87581041_87581067	0.493658	Sox6_Sox9	ENSMUST00000018544.5|Sept4|ENSMUSG00000020486.12|septin 4 	ENSMUST00000063156.4|Sept4|ENSMUSG00000020486.12|septin 4 	ENSMUST00000107960.1|Sept4|ENSMUSG00000020486.12|septin 4
mm10_v2_chr1_-_97761538_97761609	0.483428	Sox6_Sox9	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr16_+_94370618_94370784	0.477816	Sox6_Sox9	ENSMUST00000117648.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000147352.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150346.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000155692.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000153988.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000141856.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000152117.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150097.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000122895.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000151770.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chr12_+_51348265_51348368	0.47568	Sox6_Sox9	ENSMUST00000119211.1|G2e3|ENSMUSG00000035293.7|G2/M-phase specific E3 ubiquitin ligase
mm10_v2_chr4_-_135873801_135873853	0.472153	Sox6_Sox9	ENSMUST00000030436.5|Pnrc2|ENSMUSG00000028675.6|proline-rich nuclear receptor coactivator 2
mm10_v2_chr11_-_6274830_6274886	0.460159	Sox6_Sox9	ENSMUST00000132147.1|Tmed4|ENSMUSG00000004394.6|transmembrane emp24 protein transport domain containing 4 	ENSMUST00000004508.6|Tmed4|ENSMUSG00000004394.6|transmembrane emp24 protein transport domain containing 4
mm10_v2_chr12_+_19606929_19606929	0.457749	Sox6_Sox9	ENSMUST00000105167.1|Gm9257|ENSMUSG00000095254.1|predicted gene 9257
mm10_v2_chr4_+_11579647_11579674	0.455911	Sox6_Sox9	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr5_+_109996506_109996542	0.455756	Sox6_Sox9	ENSMUST00000112540.1|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932 	ENSMUST00000099484.2|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932 	ENSMUST00000125213.1|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932 	ENSMUST00000143639.1|Zfp932|ENSMUSG00000066613.8|zinc finger protein 932
mm10_v2_chr8_-_46080284_46080284	0.454947	Sox6_Sox9	ENSMUST00000177186.1|Snx25|ENSMUSG00000038291.10|sorting nexin 25
mm10_v2_chr19_-_56822161_56822220	0.454235	Sox6_Sox9	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr7_+_127800604_127800696	0.453553	Sox6_Sox9	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr4_+_43875524_43875558	0.446547	Sox6_Sox9	ENSMUST00000030198.6|Reck|ENSMUSG00000028476.7|reversion-inducing-cysteine-rich protein with kazal motifs
mm10_v2_chr4_+_48585276_48585365	0.445996	Sox6_Sox9	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr2_+_181763315_181763335	0.445951	Sox6_Sox9	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr4_-_135873546_135873606	0.438414	Sox6_Sox9	ENSMUST00000142585.1|Pnrc2|ENSMUSG00000028675.6|proline-rich nuclear receptor coactivator 2
mm10_v2_chr1_+_75546449_75546514	0.430672	Sox6_Sox9	ENSMUST00000150142.1|Slc4a3|ENSMUSG00000006576.10|solute carrier family 4 (anion exchanger), member 3
mm10_v2_chr5_+_3928033_3928178	0.42757	Sox6_Sox9	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr5_-_109751597_109751719	0.422906	Sox6_Sox9	ENSMUST00000112547.1|4930522L14Rik|ENSMUSG00000072762.3|RIKEN cDNA 4930522L14 gene
mm10_v2_chr15_-_26895049_26895049	0.422896	Sox6_Sox9	ENSMUST00000059204.9|Fbxl7|ENSMUSG00000043556.9|F-box and leucine-rich repeat protein 7
mm10_v2_chr4_+_48585135_48585187	0.41787	Sox6_Sox9	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr11_-_90687572_90687607	0.41052	Sox6_Sox9	ENSMUST00000107869.2|Tom1l1|ENSMUSG00000020541.6|target of myb1-like 1 (chicken) 	ENSMUST00000154599.1|Tom1l1|ENSMUSG00000020541.6|target of myb1-like 1 (chicken) 	ENSMUST00000107868.1|Tom1l1|ENSMUSG00000020541.6|target of myb1-like 1 (chicken) 	ENSMUST00000020849.2|Tom1l1|ENSMUSG00000020541.6|target of myb1-like 1 (chicken)
mm10_v2_chr2_+_150909565_150909642	0.408845	Sox6_Sox9	ENSMUST00000028948.4|Gins1|ENSMUSG00000027454.4|GINS complex subunit 1 (Psf1 homolog)
mm10_v2_chr16_+_94370786_94370823	0.407948	Sox6_Sox9	ENSMUST00000147046.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000149885.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000127667.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000119131.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000145883.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chrX_+_57053549_57053615	0.405863	Sox6_Sox9	ENSMUST00000114751.2|Htatsf1|ENSMUSG00000067873.5|HIV TAT specific factor 1 	ENSMUST00000088652.5|Htatsf1|ENSMUSG00000067873.5|HIV TAT specific factor 1
mm10_v2_chr6_-_12749193_12749253	0.405683	Sox6_Sox9	ENSMUST00000046121.6|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A 	ENSMUST00000172356.1|Thsd7a|ENSMUSG00000032625.8|thrombospondin, type I, domain containing 7A
mm10_v2_chr9_+_110532501_110532600	0.404427	Sox6_Sox9	ENSMUST00000153838.2|Setd2|ENSMUSG00000044791.10|SET domain containing 2
mm10_v2_chr13_+_80886095_80886201	0.40123	Sox6_Sox9	ENSMUST00000161441.1|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr14_+_79515618_79515694	0.398698	Sox6_Sox9	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr2_+_32535315_32535359	0.397021	Sox6_Sox9	ENSMUST00000133512.1|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A 	ENSMUST00000048375.5|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A
mm10_v2_chr3_-_66296807_66296837	0.394669	Sox6_Sox9	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chr7_-_142666816_142666842	0.388723	Sox6_Sox9	ENSMUST00000105935.1|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr7_-_105787567_105787654	0.385219	Sox6_Sox9	ENSMUST00000144189.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chr4_+_62619515_62619582	0.383039	Sox6_Sox9	ENSMUST00000084521.4|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3 	ENSMUST00000107424.1|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr5_+_3928267_3928300	0.382767	Sox6_Sox9	ENSMUST00000044492.8|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr9_-_75409352_75409383	0.379439	Sox6_Sox9	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr11_+_61653259_61653353	0.379425	Sox6_Sox9	ENSMUST00000004959.2|Grap|ENSMUSG00000004837.2|GRB2-related adaptor protein
mm10_v2_chr6_+_29859662_29859685	0.37804	Sox6_Sox9	ENSMUST00000128927.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr17_+_37193889_37193897	0.370515	Sox6_Sox9	ENSMUST00000038844.6|Ubd|ENSMUSG00000035186.6|ubiquitin D
mm10_v2_chr9_+_27790947_27790991	0.369292	Sox6_Sox9	ENSMUST00000115243.2|Opcml|ENSMUSG00000062257.6|opioid binding protein/cell adhesion molecule-like
mm10_v2_chr3_+_101377074_101377158	0.365832	Sox6_Sox9	ENSMUST00000043983.5|Igsf3|ENSMUSG00000042035.6|immunoglobulin superfamily, member 3
mm10_v2_chr15_-_102722120_102722137	0.363745	Sox6_Sox9	ENSMUST00000171838.1|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr3_+_131110350_131110471	0.362541	Sox6_Sox9	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr4_-_82705735_82705754	0.356909	Sox6_Sox9	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr6_+_29859686_29859710	0.354523	Sox6_Sox9	ENSMUST00000134438.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chrX_+_166238901_166238914	0.354172	Sox6_Sox9	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr11_+_94044111_94044121	0.347332	Sox6_Sox9	ENSMUST00000132079.1|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chrX_+_136822671_136822780	0.347247	Sox6_Sox9	ENSMUST00000033800.6|Plp1|ENSMUSG00000031425.9|proteolipid protein (myelin) 1
mm10_v2_chr19_+_53600377_53600435	0.341248	Sox6_Sox9	ENSMUST00000025930.9|Smc3|ENSMUSG00000024974.10|structural maintenance of chromosomes 3
mm10_v2_chr1_-_150465563_150465604	0.339708	Sox6_Sox9	ENSMUST00000164600.1|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000111902.2|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000111901.2|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) 	ENSMUST00000006171.9|Prg4|ENSMUSG00000006014.10|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm10_v2_chr15_-_102722150_102722178	0.338356	Sox6_Sox9	ENSMUST00000023818.3|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chrX_+_112600526_112600526	0.336642	Sox6_Sox9	ENSMUST00000113409.1|Zfp711|ENSMUSG00000025529.8|zinc finger protein 711
mm10_v2_chr12_+_8674129_8674150	0.332565	Sox6_Sox9	ENSMUST00000111123.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000178015.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000020915.3|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr10_-_58675631_58675654	0.327622	Sox6_Sox9	ENSMUST00000003312.4|Edar|ENSMUSG00000003227.4|ectodysplasin-A receptor
mm10_v2_chr2_-_146511899_146511979	0.326255	Sox6_Sox9	ENSMUST00000131824.1|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr12_+_24708984_24709029	0.325134	Sox6_Sox9	ENSMUST00000154588.1|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr18_+_37477768_37477835	0.323573	Sox6_Sox9	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr19_+_47579602_47579681	0.317663	Sox6_Sox9	ENSMUST00000026043.5|Slk|ENSMUSG00000025060.8|STE20-like kinase
mm10_v2_chr12_+_84996309_84996419	0.315459	Sox6_Sox9	ENSMUST00000168977.1|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1 	ENSMUST00000021670.8|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr4_+_140701466_140701509	0.306748	Sox6_Sox9	ENSMUST00000038893.5|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2 	ENSMUST00000138808.1|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chrX_+_109095359_109095391	0.305138	Sox6_Sox9	ENSMUST00000033598.8|Sh3bgrl|ENSMUSG00000031246.8|SH3-binding domain glutamic acid-rich protein like
mm10_v2_chr18_+_37447641_37447674	0.302739	Sox6_Sox9	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr14_+_75136326_75136346	0.301513	Sox6_Sox9	ENSMUST00000145303.1|Lcp1|ENSMUSG00000021998.10|lymphocyte cytosolic protein 1
mm10_v2_chr2_+_32741452_32741499	0.300592	Sox6_Sox9	ENSMUST00000131101.1|Sh2d3c|ENSMUSG00000059013.6|SH2 domain containing 3C
mm10_v2_chr19_+_3767953_3768033	0.300054	Sox6_Sox9	ENSMUST00000113970.1|Suv420h1|ENSMUSG00000045098.12|suppressor of variegation 4-20 homolog 1 (Drosophila)
mm10_v2_chr13_+_75967704_75967753	0.294853	Sox6_Sox9	ENSMUST00000022081.1|Spata9|ENSMUSG00000021590.6|spermatogenesis associated 9
mm10_v2_chr10_-_63339023_63339042	0.293947	Sox6_Sox9	ENSMUST00000177694.1|Sirt1|ENSMUSG00000020063.10|sirtuin 1 	ENSMUST00000020257.6|Sirt1|ENSMUSG00000020063.10|sirtuin 1 	ENSMUST00000105442.2|Sirt1|ENSMUSG00000020063.10|sirtuin 1
mm10_v2_chr18_-_24020749_24020813	0.290631	Sox6_Sox9	ENSMUST00000066497.5|Zfp191|ENSMUSG00000051469.8|zinc finger protein 191
mm10_v2_chr13_+_23746734_23746763	0.288107	Sox6_Sox9	ENSMUST00000099703.2|Hist1h2bb|ENSMUSG00000075031.2|histone cluster 1, H2bb
mm10_v2_chr5_+_109923400_109923400	0.287065	Sox6_Sox9	ENSMUST00000112544.1|Gm15446|ENSMUSG00000090015.2|predicted gene 15446
mm10_v2_chr5_-_109691041_109691041	0.285775	Sox6_Sox9	ENSMUST00000092720.3|5430403G16Rik|ENSMUSG00000072763.2|RIKEN cDNA 5430403G16 gene
mm10_v2_chr11_-_50292302_50292363	0.280816	Sox6_Sox9	ENSMUST00000059458.4|Maml1|ENSMUSG00000050567.10|mastermind like 1 (Drosophila)
mm10_v2_chr2_+_91257323_91257371	0.279719	Sox6_Sox9	ENSMUST00000111349.2|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3 	ENSMUST00000131711.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr17_-_70851189_70851216	0.277208	Sox6_Sox9	ENSMUST00000059775.8|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr13_+_14063776_14063822	0.276576	Sox6_Sox9	ENSMUST00000129488.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110536.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110534.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000039538.8|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like) 	ENSMUST00000110533.1|Arid4b|ENSMUSG00000039219.11|AT rich interactive domain 4B (RBP1-like)
mm10_v2_chr1_+_88227005_88227064	0.272802	Sox6_Sox9	ENSMUST00000061013.6|Mroh2a|ENSMUSG00000079429.3|maestro heat-like repeat family member 2A 	ENSMUST00000113130.1|Mroh2a|ENSMUSG00000079429.3|maestro heat-like repeat family member 2A
mm10_v2_chr2_-_65567465_65567495	0.271335	Sox6_Sox9	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr14_+_62837679_62837726	0.267382	Sox6_Sox9	ENSMUST00000014691.8|Wdfy2|ENSMUSG00000014547.9|WD repeat and FYVE domain containing 2
mm10_v2_chr14_+_47663756_47663756	0.262785	Sox6_Sox9	ENSMUST00000022391.7|Ktn1|ENSMUSG00000021843.10|kinectin 1
mm10_v2_chr6_+_29859374_29859381	0.261353	Sox6_Sox9	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr12_-_100159601_100159672	0.257192	Sox6_Sox9	ENSMUST00000021596.7|Nrde2|ENSMUSG00000021179.7|nrde-2 necessary for RNA interference, domain containing
mm10_v2_chr4_-_116405986_116406120	0.252039	Sox6_Sox9	ENSMUST00000123072.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2 	ENSMUST00000144281.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2
mm10_v2_chr16_+_78301673_78301760	0.247011	Sox6_Sox9	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr13_+_21945084_21945140	0.245325	Sox6_Sox9	ENSMUST00000176511.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000102978.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000152258.2|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like)
mm10_v2_chr13_-_106847267_106847267	0.245287	Sox6_Sox9	ENSMUST00000057427.4|Lrrc70|ENSMUSG00000078933.1|leucine rich repeat containing 70
mm10_v2_chr2_-_168207063_168207142	0.23733	Sox6_Sox9	ENSMUST00000088001.5|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr12_+_24831583_24831658	0.235528	Sox6_Sox9	ENSMUST00000110942.3|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2 	ENSMUST00000078902.6|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2
mm10_v2_chr3_+_135825788_135825800	0.233209	Sox6_Sox9	ENSMUST00000167390.1|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr15_+_41830921_41831001	0.22936	Sox6_Sox9	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr15_-_79658749_79658798	0.227292	Sox6_Sox9	ENSMUST00000109646.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr4_+_141242850_141242909	0.223397	Sox6_Sox9	ENSMUST00000138096.1|Arhgef19|ENSMUSG00000028919.5|Rho guanine nucleotide exchange factor (GEF) 19 	ENSMUST00000006618.2|Arhgef19|ENSMUSG00000028919.5|Rho guanine nucleotide exchange factor (GEF) 19 	ENSMUST00000125392.1|Arhgef19|ENSMUSG00000028919.5|Rho guanine nucleotide exchange factor (GEF) 19
mm10_v2_chr13_-_29984219_29984353	0.222622	Sox6_Sox9	ENSMUST00000146092.1|E2f3|ENSMUSG00000016477.11|E2F transcription factor 3
mm10_v2_chr17_+_78491549_78491565	0.221281	Sox6_Sox9	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr13_+_88821472_88821520	0.220234	Sox6_Sox9	ENSMUST00000118731.1|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3 	ENSMUST00000081769.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr3_+_31902666_31902703	0.216914	Sox6_Sox9	ENSMUST00000119970.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2 	ENSMUST00000178668.1|Kcnmb2|ENSMUSG00000037610.9|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm10_v2_chr4_-_148130678_148130706	0.213344	Sox6_Sox9	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr15_-_79658889_79658956	0.204273	Sox6_Sox9	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr9_+_54863742_54863801	0.203147	Sox6_Sox9	ENSMUST00000034843.7|Ireb2|ENSMUSG00000032293.7|iron responsive element binding protein 2
mm10_v2_chr11_-_62392605_62392659	0.203029	Sox6_Sox9	ENSMUST00000151498.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1 	ENSMUST00000159069.1|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr7_-_133122615_133122762	0.201387	Sox6_Sox9	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr12_+_8674224_8674275	0.200416	Sox6_Sox9	ENSMUST00000111122.2|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr11_-_96977660_96977711	0.195964	Sox6_Sox9	ENSMUST00000107626.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor 	ENSMUST00000107624.1|Sp2|ENSMUSG00000018678.6|Sp2 transcription factor
mm10_v2_chr15_+_34082664_34082734	0.19561	Sox6_Sox9	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr17_-_34615965_34615978	0.195499	Sox6_Sox9	ENSMUST00000097345.3|Egfl8|ENSMUSG00000015467.8|EGF-like domain 8 	ENSMUST00000015611.7|Egfl8|ENSMUSG00000015467.8|EGF-like domain 8
mm10_v2_chrX_-_104201126_104201185	0.191942	Sox6_Sox9	ENSMUST00000056502.6|C77370|ENSMUSG00000046449.9|expressed sequence C77370 	ENSMUST00000118314.1|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr2_-_168206875_168206922	0.190035	Sox6_Sox9	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr13_+_88821606_88821642	0.188842	Sox6_Sox9	ENSMUST00000043111.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr7_+_141949982_141950086	0.188194	Sox6_Sox9	ENSMUST00000105989.2|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000075528.5|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000174499.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr6_+_143167210_143167267	0.18795	Sox6_Sox9	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr12_+_111039334_111039400	0.186094	Sox6_Sox9	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chrX_+_20425688_20425762	0.184746	Sox6_Sox9	ENSMUST00000115384.2|Phf16|ENSMUSG00000037315.8|PHD finger protein 16
mm10_v2_chr5_-_8367982_8368107	0.175268	Sox6_Sox9	ENSMUST00000088761.4|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115386.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000050166.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000046838.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115388.2|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000088744.5|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115385.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22
mm10_v2_chr7_-_30552255_30552316	0.174843	Sox6_Sox9	ENSMUST00000108165.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749 	ENSMUST00000153594.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749
mm10_v2_chr2_-_37703845_37703885	0.171586	Sox6_Sox9	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr4_+_115057683_115057811	0.16107	Sox6_Sox9	ENSMUST00000161601.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr8_-_69184177_69184240	0.160881	Sox6_Sox9	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr1_+_158362330_158362411	0.160438	Sox6_Sox9	ENSMUST00000170718.1|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr7_+_25681158_25681158	0.159911	Sox6_Sox9	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr2_-_65567505_65567627	0.157679	Sox6_Sox9	ENSMUST00000100069.2|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr4_+_86874396_86874438	0.157402	Sox6_Sox9	ENSMUST00000045224.7|Acer2|ENSMUSG00000038007.8|alkaline ceramidase 2 	ENSMUST00000084433.4|Acer2|ENSMUSG00000038007.8|alkaline ceramidase 2
mm10_v2_chr10_-_117376955_117376978	0.155753	Sox6_Sox9	ENSMUST00000069168.6|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6 	ENSMUST00000176686.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6
mm10_v2_chr7_-_127725616_127725616	0.15488	Sox6_Sox9	ENSMUST00000076091.2|Ctf2|ENSMUSG00000060034.4|cardiotrophin 2
mm10_v2_chr11_+_3330781_3330812	0.15361	Sox6_Sox9	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr5_+_64230285_64230312	0.152688	Sox6_Sox9	ENSMUST00000119756.1|Tbc1d1|ENSMUSG00000029174.12|TBC1 domain family, member 1
mm10_v2_chr9_-_60511003_60511035	0.152369	Sox6_Sox9	ENSMUST00000098660.3|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr12_+_84996487_84996496	0.151821	Sox6_Sox9	ENSMUST00000101202.3|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr4_+_42655251_42655251	0.149096	Sox6_Sox9	ENSMUST00000177785.1|Ccl27b|ENSMUSG00000096826.1|chemokine (C-C motif) ligand 27b
mm10_v2_chr16_+_17276662_17276680	0.146924	Sox6_Sox9	ENSMUST00000069420.4|Tmem191c|ENSMUSG00000055692.12|transmembrane protein 191C
mm10_v2_chr8_+_106415319_106415396	0.142257	Sox6_Sox9	ENSMUST00000034382.7|Zfp90|ENSMUSG00000031907.8|zinc finger protein 90
mm10_v2_chr10_-_117376922_117376954	0.137461	Sox6_Sox9	ENSMUST00000177145.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6 	ENSMUST00000176670.1|Cpsf6|ENSMUSG00000055531.6|cleavage and polyadenylation specific factor 6
mm10_v2_chr4_+_48585193_48585215	0.136026	Sox6_Sox9	ENSMUST00000107703.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr4_-_135272798_135272819	0.134329	Sox6_Sox9	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr17_+_35866056_35866085	0.130596	Sox6_Sox9	ENSMUST00000122899.1|Ppp1r18|ENSMUSG00000034595.11|protein phosphatase 1, regulatory subunit 18
mm10_v2_chr9_+_13765970_13766043	0.129898	Sox6_Sox9	ENSMUST00000152532.1|Mtmr2|ENSMUSG00000031918.10|myotubularin related protein 2
mm10_v2_chr4_+_130663321_130663412	0.128643	Sox6_Sox9	ENSMUST00000030315.6|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105992.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000105991.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000143277.1|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097864.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila) 	ENSMUST00000097862.2|Pum1|ENSMUSG00000028580.9|pumilio 1 (Drosophila)
mm10_v2_chr13_-_104816908_104816953	0.128568	Sox6_Sox9	ENSMUST00000022228.6|Cwc27|ENSMUSG00000021715.6|CWC27 spliceosome-associated protein homolog (S. cerevisiae)
mm10_v2_chr9_-_7835255_7835255	0.127628	Sox6_Sox9	ENSMUST00000074246.6|Birc2|ENSMUSG00000057367.6|baculoviral IAP repeat-containing 2
mm10_v2_chr4_+_134396320_134396409	0.126667	Sox6_Sox9	ENSMUST00000105869.2|Pafah2|ENSMUSG00000037366.8|platelet-activating factor acetylhydrolase 2
mm10_v2_chr10_+_42860348_42860377	0.126411	Sox6_Sox9	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr15_+_100038635_100038669	0.125599	Sox6_Sox9	ENSMUST00000100203.3|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr1_+_158362261_158362304	0.117318	Sox6_Sox9	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr5_+_34549595_34549688	0.117268	Sox6_Sox9	ENSMUST00000179943.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr6_-_42710036_42710120	0.117211	Sox6_Sox9	ENSMUST00000045054.4|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr14_-_20618339_20618365	0.114726	Sox6_Sox9	ENSMUST00000035340.7|Usp54|ENSMUSG00000034235.10|ubiquitin specific peptidase 54
mm10_v2_chr2_+_153031852_153032014	0.113668	Sox6_Sox9	ENSMUST00000037235.6|Xkr7|ENSMUSG00000042631.7|X Kell blood group precursor related family member 7 homolog
mm10_v2_chr11_+_51261719_51261731	0.113324	Sox6_Sox9	ENSMUST00000130641.1|Clk4|ENSMUSG00000020385.10|CDC like kinase 4
mm10_v2_chr16_-_4213404_4213404	0.113058	Sox6_Sox9	ENSMUST00000023165.6|Crebbp|ENSMUSG00000022521.8|CREB binding protein
mm10_v2_chr7_-_81934316_81934473	0.111866	Sox6_Sox9	ENSMUST00000026094.5|Hdgfrp3|ENSMUSG00000025104.7|hepatoma-derived growth factor, related protein 3 	ENSMUST00000107305.1|Hdgfrp3|ENSMUSG00000025104.7|hepatoma-derived growth factor, related protein 3
mm10_v2_chr4_+_100776664_100776692	0.108838	Sox6_Sox9	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chrM_+_7759_7927	0.108655	Sox6_Sox9	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr4_+_42158092_42158092	0.108023	Sox6_Sox9	ENSMUST00000098122.2|Gm13306|ENSMUSG00000073877.4|predicted gene 13306
mm10_v2_chr9_+_101074727_101074727	0.107242	Sox6_Sox9	ENSMUST00000085177.3|Msl2|ENSMUSG00000066415.3|male-specific lethal 2 homolog (Drosophila)
mm10_v2_chr1_-_135375233_135375245	0.104687	Sox6_Sox9	ENSMUST00000041240.3|Shisa4|ENSMUSG00000041889.7|shisa homolog 4 (Xenopus laevis)
mm10_v2_chr3_+_88716838_88716883	0.103592	Sox6_Sox9	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr4_-_99120898_99120935	0.103117	Sox6_Sox9	ENSMUST00000075836.5|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr1_-_33814516_33814576	0.103099	Sox6_Sox9	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr10_-_53699343_53699343	0.100965	Sox6_Sox9	ENSMUST00000163761.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr11_+_58330744_58330777	0.0984145	Sox6_Sox9	ENSMUST00000073128.6|Sh3bp5l|ENSMUSG00000013646.11|SH3 binding domain protein 5 like
mm10_v2_chr11_-_6444352_6444443	0.0970708	Sox6_Sox9	ENSMUST00000093346.5|H2afv|ENSMUSG00000041126.10|H2A histone family, member V 	ENSMUST00000109737.2|H2afv|ENSMUSG00000041126.10|H2A histone family, member V
mm10_v2_chr18_+_37742088_37742137	0.0944136	Sox6_Sox9	ENSMUST00000003599.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr10_+_88091070_88091076	0.0938175	Sox6_Sox9	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr2_-_157079212_157079276	0.0932658	Sox6_Sox9	ENSMUST00000069098.6|Soga1|ENSMUSG00000055485.6|suppressor of glucose, autophagy associated 1
mm10_v2_chr2_-_30903255_30903297	0.0867039	Sox6_Sox9	ENSMUST00000102852.3|Ptges|ENSMUSG00000050737.11|prostaglandin E synthase
mm10_v2_chr8_+_45507768_45507818	0.0863855	Sox6_Sox9	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr18_-_16809233_16809324	0.0754431	Sox6_Sox9	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr3_+_88716884_88716906	0.0720065	Sox6_Sox9	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr2_-_156312470_156312704	0.0607196	Sox6_Sox9	ENSMUST00000079125.6|Scand1|ENSMUSG00000046229.9|SCAN domain-containing 1
mm10_v2_chr3_-_116807733_116807755	0.0586532	Sox6_Sox9	ENSMUST00000159670.1|Agl|ENSMUSG00000033400.8|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm10_v2_chr19_+_21272276_21272296	0.0532506	Sox6_Sox9	ENSMUST00000025659.4|Zfand5|ENSMUSG00000024750.4|zinc finger, AN1-type domain 5
mm10_v2_chrX_-_103981242_103981287	0.0532052	Sox6_Sox9	ENSMUST00000121153.1|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting 	ENSMUST00000070705.4|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting
mm10_v2_chr9_+_7764041_7764177	0.0523441	Sox6_Sox9	ENSMUST00000052865.9|Tmem123|ENSMUSG00000050912.9|transmembrane protein 123
mm10_v2_chr11_-_106579111_106579141	0.0506209	Sox6_Sox9	ENSMUST00000103070.2|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr9_+_74976096_74976177	0.048168	Sox6_Sox9	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr10_+_127063599_127063655	0.0478765	Sox6_Sox9	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chrX_+_101383726_101383741	0.0476737	Sox6_Sox9	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr6_+_11925869_11925941	0.0470214	Sox6_Sox9	ENSMUST00000115510.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000115511.2|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000090632.4|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr12_+_24974914_24974948	0.0438266	Sox6_Sox9	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr16_+_4036942_4037103	0.042634	Sox6_Sox9	ENSMUST00000137748.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000006136.4|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000157044.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I 	ENSMUST00000120009.1|Dnase1|ENSMUSG00000005980.9|deoxyribonuclease I
mm10_v2_chr14_+_47298260_47298342	0.0418985	Sox6_Sox9	ENSMUST00000166743.1|Mapk1ip1l|ENSMUSG00000021840.10|mitogen-activated protein kinase 1 interacting protein 1-like
mm10_v2_chr5_+_30711849_30711905	0.0386802	Sox6_Sox9	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr2_+_156312589_156312633	0.0370724	Sox6_Sox9	ENSMUST00000073942.5|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2 	ENSMUST00000109580.1|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2
mm10_v2_chr5_+_34549568_34549581	0.0313418	Sox6_Sox9	ENSMUST00000118545.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr2_-_6884975_6884996	0.0302897	Sox6_Sox9	ENSMUST00000114924.3|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000170438.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000114934.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr12_+_69296676_69296798	0.0295687	Sox6_Sox9	ENSMUST00000021362.4|Klhdc2|ENSMUSG00000020978.4|kelch domain containing 2
mm10_v2_chr7_+_27195781_27195885	0.0294803	Sox6_Sox9	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr12_+_24708241_24708292	0.0266151	Sox6_Sox9	ENSMUST00000020980.5|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr5_-_23616528_23616597	0.0262094	Sox6_Sox9	ENSMUST00000088392.4|Srpk2|ENSMUSG00000062604.7|serine/arginine-rich protein specific kinase 2
mm10_v2_chr7_-_127615208_127615219	0.0257255	Sox6_Sox9	ENSMUST00000122066.1|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr5_-_100038869_100038885	0.0251948	Sox6_Sox9	ENSMUST00000153442.1|Hnrnpdl|ENSMUSG00000029328.9|heterogeneous nuclear ribonucleoprotein D-like
mm10_v2_chr4_+_3940747_3940854	0.0221981	Sox6_Sox9	ENSMUST00000119403.1|Chchd7|ENSMUSG00000042198.6|coiled-coil-helix-coiled-coil-helix domain containing 7
mm10_v2_chr13_+_65278810_65278838	0.0205142	Sox6_Sox9	ENSMUST00000126879.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369 	ENSMUST00000130799.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr1_+_39900883_39900963	0.0197356	Sox6_Sox9	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr2_+_32151074_32151262	0.0190954	Sox6_Sox9	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr11_-_86807624_86807746	0.0161922	Sox6_Sox9	ENSMUST00000018569.7|Dhx40|ENSMUSG00000018425.12|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm10_v2_chr17_+_47140942_47140942	0.0154815	Sox6_Sox9	ENSMUST00000077951.7|Trerf1|ENSMUSG00000064043.7|transcriptional regulating factor 1
mm10_v2_chr4_+_115057410_115057438	0.0152827	Sox6_Sox9	ENSMUST00000136946.1|Tal1|ENSMUSG00000028717.6|T cell acute lymphocytic leukemia 1
mm10_v2_chr5_+_138171997_138172021	0.0143974	Sox6_Sox9	ENSMUST00000019662.4|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1 	ENSMUST00000151318.1|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1
mm10_v2_chr14_+_49172202_49172254	0.0138302	Sox6_Sox9	ENSMUST00000153488.1|Naa30|ENSMUSG00000036282.8|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm10_v2_chr5_-_65537139_65537184	0.0136977	Sox6_Sox9	ENSMUST00000149167.1|Smim14|ENSMUSG00000037822.6|small integral membrane protein 14
mm10_v2_chr7_-_130266237_130266263	0.0132213	Sox6_Sox9	ENSMUST00000117872.1|Fgfr2|ENSMUSG00000030849.11|fibroblast growth factor receptor 2 	ENSMUST00000120187.1|Fgfr2|ENSMUSG00000030849.11|fibroblast growth factor receptor 2
mm10_v2_chr12_+_17690793_17690823	0.0129018	Sox6_Sox9	ENSMUST00000071858.3|Hpcal1|ENSMUSG00000071379.1|hippocalcin-like 1
mm10_v2_chr4_-_117682233_117682279	0.0113074	Sox6_Sox9	ENSMUST00000102687.3|Dmap1|ENSMUSG00000009640.5|DNA methyltransferase 1-associated protein 1
mm10_v2_chr15_-_76050776_76050795	0.0107231	Sox6_Sox9	ENSMUST00000145830.1|Scrib|ENSMUSG00000022568.10|scribbled homolog (Drosophila) 	ENSMUST00000148211.1|Scrib|ENSMUSG00000022568.10|scribbled homolog (Drosophila)
mm10_v2_chr4_-_44167988_44168008	0.0102416	Sox6_Sox9	ENSMUST00000143337.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr2_+_156312299_156312426	0.0093378	Sox6_Sox9	ENSMUST00000037096.2|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2
mm10_v2_chr2_-_84650760_84650771	0.00861816	Sox6_Sox9	ENSMUST00000111691.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr5_+_30711564_30711586	0.00228613	Sox6_Sox9	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr2_-_84650714_84650749	0.00179108	Sox6_Sox9	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr15_+_83779975_83779988	0.000674337	Sox6_Sox9	ENSMUST00000163723.1|Mpped1|ENSMUSG00000041708.6|metallophosphoesterase domain containing 1
mm10_v2_chr9_-_107770945_107771007	1.30992e-05	Sox6_Sox9	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
