Motif ID: Msx1_Lhx9_Barx1_Rax_Dlx6

Z-value: 0.706

Transcription factors associated with Msx1_Lhx9_Barx1_Rax_Dlx6:

Gene SymbolEntrez IDGene Name
Barx1 ENSMUSG00000021381.4 Barx1
Dlx6 ENSMUSG00000029754.7 Dlx6
Lhx9 ENSMUSG00000019230.8 Lhx9
Msx1 ENSMUSG00000048450.10 Msx1
Rax ENSMUSG00000024518.3 Rax

Activity-expression correlation:

Gene SymbolPromoterPearson corr. coef.P-valuePlot
Lhx9mm10_v2_chr1_-_138848576_138848603-0.464.3e-03Click!
Msx1mm10_v2_chr5_-_37824580_378245840.391.6e-02Click!
Dlx6mm10_v2_chr6_+_6863769_68637970.221.8e-01Click!
Raxmm10_v2_chr18_-_65939048_65939089-0.048.3e-01Click!


Activity profile for motif Msx1_Lhx9_Barx1_Rax_Dlx6.

activity profile for motif Msx1_Lhx9_Barx1_Rax_Dlx6


Sorted Z-values histogram for motif Msx1_Lhx9_Barx1_Rax_Dlx6

Sorted Z-values for motif Msx1_Lhx9_Barx1_Rax_Dlx6



Network of associatons between targets according to the STRING database.



First level regulatory network of Msx1_Lhx9_Barx1_Rax_Dlx6

PNG image of the network

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Top targets:


Showing 1 to 20 of 188 entries
PromoterScoreRefseqGene SymbolGene Name
chr5_-_134747241 8.474 ENSMUST00000015138.9
 Eln
elastin
chr3_-_49757257 6.703 ENSMUST00000035931.7
 Pcdh18
protocadherin 18
chr2_+_116067213 6.136 ENSMUST00000152412.1
 G630016G05Rik
RIKEN cDNA G630016G05 gene
chr16_+_42907563 5.138 ENSMUST00000151244.1
ENSMUST00000114694.2
 Zbtb20

zinc finger and BTB domain containing 20

chr5_-_62766153 4.858 ENSMUST00000076623.4
 Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr2_-_116067391 4.377 ENSMUST00000140185.1
 2700033N17Rik
RIKEN cDNA 2700033N17 gene
chr11_-_98053415 4.271 ENSMUST00000017544.2
 Stac2
SH3 and cysteine rich domain 2
chr14_-_118052235 4.189 ENSMUST00000022725.2
 Dct
dopachrome tautomerase
chr12_-_83487708 3.447 ENSMUST00000177959.1
ENSMUST00000178756.1
 Dpf3

D4, zinc and double PHD fingers, family 3

chr9_-_40346290 3.337 ENSMUST00000121357.1
 Gramd1b
GRAM domain containing 1B
chr16_-_37384915 2.854 ENSMUST00000114787.1
ENSMUST00000114782.1
ENSMUST00000023526.2
ENSMUST00000114775.1
 Stxbp5l



syntaxin binding protein 5-like



chr2_-_77703252 2.750 ENSMUST00000171063.1
 Zfp385b
zinc finger protein 385B
chr19_+_26749726 2.744 ENSMUST00000175842.1
 Smarca2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
chr3_+_66219909 2.736 ENSMUST00000029421.5
 Ptx3
pentraxin related gene
chr1_+_104768510 2.703 ENSMUST00000062528.8
 Cdh20
cadherin 20
chr13_+_44121167 2.534 ENSMUST00000163056.1
ENSMUST00000159595.1
 Gm5083

predicted gene 5083

chr1_-_155417394 2.128 ENSMUST00000111775.1
ENSMUST00000111774.1
 Xpr1

xenotropic and polytropic retrovirus receptor 1

chr1_-_190170671 2.097 ENSMUST00000175916.1
 Prox1
prospero-related homeobox 1
chr3_+_86070915 2.056 ENSMUST00000182666.1
 Sh3d19
SH3 domain protein D19
chr16_-_37384940 2.030 ENSMUST00000114781.1
ENSMUST00000114780.1
 Stxbp5l

syntaxin binding protein 5-like


Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Showing 1 to 20 of 78 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.1 8.9 GO:0043149 contractile actin filament bundle assembly(GO:0030038) stress fiber assembly(GO:0043149)
0.3 6.5 GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0016339)
0.1 5.1 GO:0032728 positive regulation of interferon-beta production(GO:0032728)
0.1 4.9 GO:0046676 negative regulation of insulin secretion(GO:0046676)
0.6 4.2 GO:0021847 ventricular zone neuroblast division(GO:0021847)
1.3 3.8 GO:0002302 CD8-positive, alpha-beta T cell differentiation involved in immune response(GO:0002302)
0.4 3.4 GO:0035887 aortic smooth muscle cell differentiation(GO:0035887)
0.5 3.2 GO:0030643 cellular phosphate ion homeostasis(GO:0030643) phosphate ion transmembrane transport(GO:0035435) cellular trivalent inorganic anion homeostasis(GO:0072502)
1.0 3.1 GO:0090425 hepatocyte cell migration(GO:0002194) branching involved in pancreas morphogenesis(GO:0061114) acinar cell differentiation(GO:0090425) positive regulation of forebrain neuron differentiation(GO:2000979)
0.6 3.1 GO:0038032 termination of G-protein coupled receptor signaling pathway(GO:0038032)
0.5 2.7 GO:0052428 modulation of molecular function in other organism(GO:0044359) negative regulation of molecular function in other organism(GO:0044362) negative regulation of molecular function in other organism involved in symbiotic interaction(GO:0052204) modulation of molecular function in other organism involved in symbiotic interaction(GO:0052205) negative regulation by host of symbiont molecular function(GO:0052405) modification by host of symbiont molecular function(GO:0052428)
0.0 2.7 GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator(GO:0072332)
0.5 2.1 GO:0043490 malate-aspartate shuttle(GO:0043490)
0.1 2.1 GO:0051044 positive regulation of membrane protein ectodomain proteolysis(GO:0051044)
0.0 1.9 GO:0007368 determination of left/right symmetry(GO:0007368)
0.0 1.6 GO:0030168 platelet activation(GO:0030168)
0.5 1.4 GO:0042663 regulation of endodermal cell fate specification(GO:0042663)
0.1 1.4 GO:0007274 neuromuscular synaptic transmission(GO:0007274)
0.0 1.4 GO:0010811 positive regulation of cell-substrate adhesion(GO:0010811)
0.1 1.2 GO:0002230 positive regulation of defense response to virus by host(GO:0002230)

Gene overrepresentation in cellular_component category:

Showing 1 to 20 of 29 entries
Log-likelihood per target Total log-likelihoodTermDescription
2.8 8.5 GO:0071953 elastic fiber(GO:0071953)
0.3 6.9 GO:0071565 nBAF complex(GO:0071565)
0.1 3.4 GO:0097440 apical dendrite(GO:0097440)
0.1 3.2 GO:0042470 melanosome(GO:0042470) pigment granule(GO:0048770)
0.0 2.3 GO:0043197 dendritic spine(GO:0043197)
0.0 2.2 GO:0001650 fibrillar center(GO:0001650)
0.4 1.8 GO:0033093 Weibel-Palade body(GO:0033093)
0.1 1.5 GO:0005614 interstitial matrix(GO:0005614)
0.0 1.4 GO:0031594 neuromuscular junction(GO:0031594)
0.0 1.2 GO:0016459 myosin complex(GO:0016459)
0.3 1.0 GO:0038045 large latent transforming growth factor-beta complex(GO:0038045)
0.0 1.0 GO:0008023 transcription elongation factor complex(GO:0008023)
0.1 0.9 GO:0097433 dense body(GO:0097433)
0.0 0.9 GO:0060077 inhibitory synapse(GO:0060077)
0.0 0.6 GO:0016328 lateral plasma membrane(GO:0016328)
0.2 0.5 GO:0043512 inhibin A complex(GO:0043512)
0.0 0.5 GO:0043083 NMDA selective glutamate receptor complex(GO:0017146) synaptic cleft(GO:0043083)
0.0 0.5 GO:0030673 axolemma(GO:0030673)
0.1 0.4 GO:0000839 Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.1 0.4 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)

Gene overrepresentation in molecular_function category:

Showing 1 to 20 of 56 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.2 8.0 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.1 6.3 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
0.0 4.9 GO:0019905 syntaxin binding(GO:0019905)
0.3 4.2 GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863)
0.1 3.9 GO:0001105 RNA polymerase II transcription coactivator activity(GO:0001105)
0.1 3.8 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
1.1 3.2 GO:0000822 inositol hexakisphosphate binding(GO:0000822)
0.3 3.1 GO:0050693 LBD domain binding(GO:0050693)
0.1 2.8 GO:0001965 G-protein alpha-subunit binding(GO:0001965)
0.4 2.7 GO:0001849 complement component C1q binding(GO:0001849)
0.3 2.7 GO:0019865 immunoglobulin binding(GO:0019865)
0.0 2.4 GO:0002039 p53 binding(GO:0002039)
0.0 2.3 GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)
0.4 2.1 GO:0015501 glutamate:sodium symporter activity(GO:0015501)
0.1 2.1 GO:0070064 proline-rich region binding(GO:0070064)
0.0 1.8 GO:0017048 Rho GTPase binding(GO:0017048)
0.1 1.5 GO:0001968 fibronectin binding(GO:0001968)
0.0 1.2 GO:0030507 spectrin binding(GO:0030507)
0.2 1.1 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.2 1.0 GO:0050436 microfibril binding(GO:0050436)

Gene overrepresentation in C2:CP category:

Showing 1 to 16 of 16 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.1 11.8 NABA_ECM_GLYCOPROTEINS Genes encoding structural ECM glycoproteins
0.1 6.2 PID_ARF6_PATHWAY Arf6 signaling events
0.0 3.9 PID_AR_TF_PATHWAY Regulation of Androgen receptor activity
0.1 3.8 PID_CD8_TCR_DOWNSTREAM_PATHWAY Downstream signaling in naïve CD8+ T cells
0.1 2.7 ST_MYOCYTE_AD_PATHWAY Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway.
0.0 1.3 PID_NETRIN_PATHWAY Netrin-mediated signaling events
0.0 1.2 ST_ERK1_ERK2_MAPK_PATHWAY ERK1/ERK2 MAPK Pathway
0.0 1.1 PID_SMAD2_3NUCLEAR_PATHWAY Regulation of nuclear SMAD2/3 signaling
0.1 0.5 PID_ANTHRAX_PATHWAY Cellular roles of Anthrax toxin
0.0 0.5 PID_ALK1_PATHWAY ALK1 signaling events
0.0 0.5 PID_REELIN_PATHWAY Reelin signaling pathway
0.0 0.4 ST_INTERFERON_GAMMA_PATHWAY Interferon gamma pathway.
0.0 0.4 SA_REG_CASCADE_OF_CYCLIN_EXPR Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases.
0.0 0.3 PID_ANGIOPOIETIN_RECEPTOR_PATHWAY Angiopoietin receptor Tie2-mediated signaling
0.0 0.3 PID_WNT_NONCANONICAL_PATHWAY Noncanonical Wnt signaling pathway
0.0 0.2 PID_HNF3A_PATHWAY FOXA1 transcription factor network

Gene overrepresentation in C2:CP:REACTOME category:

Showing 1 to 20 of 20 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.0 6.4 REACTOME_SIGNALING_BY_RHO_GTPASES Genes involved in Signaling by Rho GTPases
0.0 2.9 REACTOME_G_ALPHA_I_SIGNALLING_EVENTS Genes involved in G alpha (i) signalling events
0.0 2.3 REACTOME_AMINO_ACID_AND_OLIGOPEPTIDE_SLC_TRANSPORTERS Genes involved in Amino acid and oligopeptide SLC transporters
0.0 2.1 REACTOME_GOLGI_ASSOCIATED_VESICLE_BIOGENESIS Genes involved in Golgi Associated Vesicle Biogenesis
0.2 1.8 REACTOME_INTRINSIC_PATHWAY Genes involved in Intrinsic Pathway
0.0 1.2 REACTOME_NETRIN1_SIGNALING Genes involved in Netrin-1 signaling
0.0 1.1 REACTOME_GABA_SYNTHESIS_RELEASE_REUPTAKE_AND_DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.1 0.9 REACTOME_FGFR1_LIGAND_BINDING_AND_ACTIVATION Genes involved in FGFR1 ligand binding and activation
0.0 0.6 REACTOME_SEMA3A_PLEXIN_REPULSION_SIGNALING_BY_INHIBITING_INTEGRIN_ADHESION Genes involved in SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion
0.0 0.6 REACTOME_RNA_POL_III_TRANSCRIPTION_INITIATION_FROM_TYPE_3_PROMOTER Genes involved in RNA Polymerase III Transcription Initiation From Type 3 Promoter
0.1 0.5 REACTOME_GLYCOPROTEIN_HORMONES Genes involved in Glycoprotein hormones
0.0 0.5 REACTOME_JNK_C_JUN_KINASES_PHOSPHORYLATION_AND_ACTIVATION_MEDIATED_BY_ACTIVATED_HUMAN_TAK1 Genes involved in JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1
0.0 0.5 REACTOME_RAS_ACTIVATION_UOPN_CA2_INFUX_THROUGH_NMDA_RECEPTOR Genes involved in Ras activation uopn Ca2+ infux through NMDA receptor
0.0 0.5 REACTOME_SIGNALING_BY_ROBO_RECEPTOR Genes involved in Signaling by Robo receptor
0.0 0.4 REACTOME_VITAMIN_B5_PANTOTHENATE_METABOLISM Genes involved in Vitamin B5 (pantothenate) metabolism
0.0 0.4 REACTOME_CYCLIN_A_B1_ASSOCIATED_EVENTS_DURING_G2_M_TRANSITION Genes involved in Cyclin A/B1 associated events during G2/M transition
0.0 0.4 REACTOME_PRE_NOTCH_PROCESSING_IN_GOLGI Genes involved in Pre-NOTCH Processing in Golgi
0.0 0.3 REACTOME_MITOCHONDRIAL_TRNA_AMINOACYLATION Genes involved in Mitochondrial tRNA aminoacylation
0.1 0.2 REACTOME_EICOSANOID_LIGAND_BINDING_RECEPTORS Genes involved in Eicosanoid ligand-binding receptors
0.0 0.1 REACTOME_DSCAM_INTERACTIONS Genes involved in DSCAM interactions