mm10_v2_chrX_-_61185558_61185558	10.2389	Aire	ENSMUST00000166381.1|Cdr1|ENSMUSG00000090546.1|cerebellar degeneration related antigen 1
mm10_v2_chr9_-_124493793_124493793	1.55128	Aire	ENSMUST00000178787.1|Gm21836|ENSMUSG00000096734.1|predicted gene, 21836
mm10_v2_chr5_-_135251209_135251242	0.943535	Aire	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chr16_+_36875119_36875205	0.814539	Aire	ENSMUST00000135406.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000023534.6|Golgb1|ENSMUSG00000078096.1|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000114812.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000134616.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm10_v2_chr5_+_43672289_43672326	0.81379	Aire	ENSMUST00000156034.1|Cc2d2a|ENSMUSG00000039765.9|coiled-coil and C2 domain containing 2A
mm10_v2_chr3_-_116968969_116969004	0.805492	Aire	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr12_-_78983476_78983493	0.800256	Aire	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr5_-_84417359_84417389	0.733056	Aire	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr19_-_28963863_28963908	0.628738	Aire	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chrM_+_11734_11757	0.609097	Aire	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr7_-_127895578_127895647	0.539873	Aire	ENSMUST00000033074.6|Vkorc1|ENSMUSG00000096145.1|vitamin K epoxide reductase complex, subunit 1
mm10_v2_chr14_+_124005355_124005355	0.527518	Aire	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr12_+_84052114_84052145	0.513905	Aire	ENSMUST00000120927.1|Acot3|ENSMUSG00000021228.8|acyl-CoA thioesterase 3
mm10_v2_chr7_-_126922887_126922926	0.470907	Aire	ENSMUST00000134134.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000119781.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000121612.2|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219
mm10_v2_chr14_+_76476913_76476930	0.448365	Aire	ENSMUST00000140251.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr9_-_108263706_108263819	0.447975	Aire	ENSMUST00000171412.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1
mm10_v2_chr16_-_91618986_91619026	0.437224	Aire	ENSMUST00000143058.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000049244.8|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000169982.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000133731.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28
mm10_v2_chr18_+_37725706_37725754	0.408849	Aire	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr2_+_175283298_175283298	0.406879	Aire	ENSMUST00000098998.3|Gm14440|ENSMUSG00000078901.2|predicted gene 14440
mm10_v2_chr13_-_110280103_110280213	0.396512	Aire	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr14_+_21481428_21481439	0.391506	Aire	ENSMUST00000182996.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr9_-_97111117_97111159	0.378183	Aire	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr4_+_42714926_42714926	0.360945	Aire	ENSMUST00000178454.1|Gm21955|ENSMUSG00000095375.1|predicted gene, 21955
mm10_v2_chr2_+_176431829_176431829	0.355853	Aire	ENSMUST00000172025.1|Gm14435|ENSMUSG00000089951.2|predicted gene 14435
mm10_v2_chr4_-_19570073_19570117	0.355729	Aire	ENSMUST00000029885.4|Cpne3|ENSMUSG00000028228.5|copine III
mm10_v2_chr18_+_37400845_37400886	0.353159	Aire	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr5_+_130369420_130369476	0.345253	Aire	ENSMUST00000086029.3|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr10_+_52358767_52358767	0.337266	Aire	ENSMUST00000180473.1|Gm26741|ENSMUSG00000097704.1|predicted gene, 26741
mm10_v2_chr1_+_65186727_65186750	0.324047	Aire	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr5_+_140735526_140735567	0.323855	Aire	ENSMUST00000120630.2|Amz1|ENSMUSG00000050022.10|archaelysin family metallopeptidase 1
mm10_v2_chr3_-_95217877_95217918	0.319755	Aire	ENSMUST00000136139.1|Gabpb2|ENSMUSG00000038766.10|GA repeat binding protein, beta 2
mm10_v2_chr16_-_36874806_36874862	0.316286	Aire	ENSMUST00000075946.5|Eaf2|ENSMUSG00000022838.7|ELL associated factor 2
mm10_v2_chr2_+_55435918_55435970	0.30594	Aire	ENSMUST00000067101.3|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr8_-_109962127_109962213	0.305486	Aire	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chr8_-_4217133_4217168	0.30279	Aire	ENSMUST00000175906.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr14_-_18894255_18894282	0.297138	Aire	ENSMUST00000124353.1|Ube2e2|ENSMUSG00000058317.5|ubiquitin-conjugating enzyme E2E 2
mm10_v2_chr15_+_101266839_101266859	0.287847	Aire	ENSMUST00000023779.6|Nr4a1|ENSMUSG00000023034.6|nuclear receptor subfamily 4, group A, member 1
mm10_v2_chr9_-_53610329_53610382	0.287836	Aire	ENSMUST00000034547.5|Acat1|ENSMUSG00000032047.5|acetyl-Coenzyme A acetyltransferase 1
mm10_v2_chr2_-_134644079_134644109	0.282921	Aire	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr2_-_165400398_165400410	0.281149	Aire	ENSMUST00000029213.4|Ocstamp|ENSMUSG00000027670.4|osteoclast stimulatory transmembrane protein
mm10_v2_chr9_+_13662460_13662460	0.273901	Aire	ENSMUST00000177755.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr11_-_69695802_69695872	0.263518	Aire	ENSMUST00000108649.1|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441 	ENSMUST00000174159.1|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441 	ENSMUST00000181810.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12
mm10_v2_chr10_-_81014902_81014945	0.257242	Aire	ENSMUST00000126317.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000092285.3|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000117805.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7
mm10_v2_chr12_+_4843303_4843419	0.257192	Aire	ENSMUST00000053034.4|BC068281|ENSMUSG00000051721.4|cDNA sequence BC068281
mm10_v2_chr12_-_104865076_104865138	0.249113	Aire	ENSMUST00000109937.1|Clmn|ENSMUSG00000021097.8|calmin 	ENSMUST00000109936.1|Clmn|ENSMUSG00000021097.8|calmin
mm10_v2_chr8_-_4216912_4217003	0.246884	Aire	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr8_+_69808672_69808742	0.243942	Aire	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr11_-_69696058_69696102	0.238758	Aire	ENSMUST00000180587.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12 	ENSMUST00000094070.4|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441
mm10_v2_chr3_+_89715016_89715084	0.233821	Aire	ENSMUST00000098924.2|Adar|ENSMUSG00000027951.10|adenosine deaminase, RNA-specific
mm10_v2_chr7_+_45896941_45897101	0.232493	Aire	ENSMUST00000069772.7|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143 	ENSMUST00000107716.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr6_-_148896150_148896237	0.212615	Aire	ENSMUST00000072324.5|Caprin2|ENSMUSG00000030309.10|caprin family member 2 	ENSMUST00000111569.2|Caprin2|ENSMUSG00000030309.10|caprin family member 2
mm10_v2_chr2_+_172248492_172248492	0.204422	Aire	ENSMUST00000038532.1|Mc3r|ENSMUSG00000038537.1|melanocortin 3 receptor
mm10_v2_chr3_+_88835231_88835231	0.199271	Aire	ENSMUST00000107498.2|Gon4l|ENSMUSG00000054199.10|gon-4-like (C.elegans)
mm10_v2_chr5_-_124354671_124354777	0.19483	Aire	ENSMUST00000031341.4|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chrM_-_14060_14074	0.192673	Aire	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr11_-_115627948_115628122	0.175239	Aire	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr13_-_62371936_62371936	0.174099	Aire	ENSMUST00000107989.3|Gm3604|ENSMUSG00000094942.1|predicted gene 3604
mm10_v2_chrX_+_48256854_48256865	0.171041	Aire	ENSMUST00000080713.4|Utp14a|ENSMUSG00000063785.6|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
mm10_v2_chr7_-_121981669_121981711	0.159807	Aire	ENSMUST00000057576.7|Cog7|ENSMUSG00000034951.9|component of oligomeric golgi complex 7
mm10_v2_chr3_-_62506970_62507027	0.157602	Aire	ENSMUST00000029336.4|Dhx36|ENSMUSG00000027770.4|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm10_v2_chr8_+_111643425_111643450	0.154157	Aire	ENSMUST00000077791.6|Zfp1|ENSMUSG00000055835.9|zinc finger protein 1
mm10_v2_chr7_+_45897429_45897534	0.151761	Aire	ENSMUST00000140243.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr17_-_6961156_6961156	0.15164	Aire	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
mm10_v2_chr8_+_64947177_64947255	0.1467	Aire	ENSMUST00000079896.7|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192 	ENSMUST00000026595.5|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192
mm10_v2_chr19_-_4191035_4191069	0.133063	Aire	ENSMUST00000045864.2|Tbc1d10c|ENSMUSG00000040247.5|TBC1 domain family, member 10c
mm10_v2_chr2_-_134644125_134644145	0.124818	Aire	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chrX_-_38576166_38576187	0.121928	Aire	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr15_+_10981747_10981765	0.121482	Aire	ENSMUST00000070877.5|Amacr|ENSMUSG00000022244.6|alpha-methylacyl-CoA racemase
mm10_v2_chr10_+_86021961_86021991	0.107577	Aire	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr10_+_53337686_53337724	0.100768	Aire	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr7_-_103741322_103741322	0.100261	Aire	ENSMUST00000051346.2|Olfr629|ENSMUSG00000047545.2|olfactory receptor 629
mm10_v2_chr4_+_154869585_154869636	0.0946171	Aire	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr4_+_11758147_11758220	0.087553	Aire	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chrX_-_38576189_38576204	0.0745192	Aire	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr1_+_44119952_44119985	0.0682901	Aire	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr1_-_90843916_90843983	0.0642491	Aire	ENSMUST00000130846.2|Col6a3|ENSMUSG00000048126.10|collagen, type VI, alpha 3 	ENSMUST00000097653.4|Col6a3|ENSMUSG00000048126.10|collagen, type VI, alpha 3 	ENSMUST00000056925.9|Col6a3|ENSMUSG00000048126.10|collagen, type VI, alpha 3
mm10_v2_chr11_+_3963970_3963983	0.0590865	Aire	ENSMUST00000020705.4|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish) 	ENSMUST00000109985.1|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm10_v2_chr3_-_89411781_89411894	0.0506309	Aire	ENSMUST00000107429.3|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000129308.2|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000107426.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000050398.4|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000162701.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm10_v2_chr1_-_128359610_128359698	0.0493207	Aire	ENSMUST00000027601.4|Mcm6|ENSMUSG00000026355.5|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
mm10_v2_chr13_+_49504774_49504816	0.0469303	Aire	ENSMUST00000051504.7|Ecm2|ENSMUSG00000043631.7|extracellular matrix protein 2, female organ and adipocyte specific
mm10_v2_chr6_-_91515878_91515889	0.0338318	Aire	ENSMUST00000032182.3|Xpc|ENSMUSG00000030094.7|xeroderma pigmentosum, complementation group C
mm10_v2_chr6_+_126939957_126939988	0.0289226	Aire	ENSMUST00000032497.3|D6Wsu163e|ENSMUSG00000030347.3|DNA segment, Chr 6, Wayne State University 163, expressed
mm10_v2_chr12_+_36157124_36157238	0.0265369	Aire	ENSMUST00000041640.3|Ankmy2|ENSMUSG00000036188.3|ankyrin repeat and MYND domain containing 2
mm10_v2_chr19_+_3323301_3323339	0.02566	Aire	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr5_+_30921825_30921866	0.0254918	Aire	ENSMUST00000117435.1|Khk|ENSMUSG00000029162.9|ketohexokinase
mm10_v2_chr4_+_63558748_63558859	0.0196988	Aire	ENSMUST00000077709.4|6330416G13Rik|ENSMUSG00000045917.11|RIKEN cDNA 6330416G13 gene
mm10_v2_chr10_+_58446845_58446928	0.0173826	Aire	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr2_-_9883993_9883993	0.0165168	Aire	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr9_-_113708209_113708259	0.015566	Aire	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr7_-_19665005_19665030	0.0152962	Aire	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr10_+_79960145_79960162	0.0152844	Aire	ENSMUST00000045247.7|Wdr18|ENSMUSG00000035754.7|WD repeat domain 18
mm10_v2_chr2_-_94010729_94010764	0.0121069	Aire	ENSMUST00000040005.6|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli) 	ENSMUST00000126378.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
mm10_v2_chr5_+_29378604_29378699	0.00662754	Aire	ENSMUST00000181005.1|4632411P08Rik|ENSMUSG00000097561.1|RIKEN cDNA 4632411P08 gene
mm10_v2_chr18_+_36793918_36793937	0.00620437	Aire	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr5_+_30921867_30921896	0.00271309	Aire	ENSMUST00000123885.1|Khk|ENSMUSG00000029162.9|ketohexokinase
mm10_v2_chr5_-_50058908_50059010	0.00196885	Aire	ENSMUST00000030971.5|Gpr125|ENSMUSG00000029090.8|G protein-coupled receptor 125
mm10_v2_chr10_-_111997204_111997279	0.00060022	Aire	ENSMUST00000074805.5|Glipr1|ENSMUSG00000056888.5|GLI pathogenesis-related 1 (glioma)
