mm10_v2_chr10_-_64090241_64090262	4.29068	Gli1	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr10_-_64090265_64090297	4.19223	Gli1	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr12_-_81333129_81333220	3.12872	Gli1	ENSMUST00000085238.6|Slc8a3|ENSMUSG00000079055.4|solute carrier family 8 (sodium/calcium exchanger), member 3 	ENSMUST00000182208.1|Slc8a3|ENSMUSG00000079055.4|solute carrier family 8 (sodium/calcium exchanger), member 3
mm10_v2_chr2_-_54085542_54085559	2.91524	Gli1	ENSMUST00000100089.2|Rprm|ENSMUSG00000075334.2|reprimo, TP53 dependent G2 arrest mediator candidate
mm10_v2_chr4_-_68954351_68954397	2.68666	Gli1	ENSMUST00000030036.5|Brinp1|ENSMUSG00000028351.5|bone morphogenic protein/retinoic acid inducible neural specific 1
mm10_v2_chr15_-_95528228_95528266	2.66392	Gli1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr2_+_118111876_118111899	2.66101	Gli1	ENSMUST00000039559.8|Thbs1|ENSMUSG00000040152.8|thrombospondin 1
mm10_v2_chr6_-_52012476_52012551	2.53152	Gli1	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr15_-_85581809_85581821	2.47149	Gli1	ENSMUST00000023015.7|Wnt7b|ENSMUSG00000022382.8|wingless-related MMTV integration site 7B
mm10_v2_chr13_+_118714678_118714701	2.4556	Gli1	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr13_-_114458720_114458736	2.38975	Gli1	ENSMUST00000022287.5|Fst|ENSMUSG00000021765.7|follistatin
mm10_v2_chr15_-_95528702_95528777	2.36083	Gli1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr5_+_30588078_30588171	2.29102	Gli1	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr11_-_119547744_119547759	2.17988	Gli1	ENSMUST00000026670.4|Nptx1|ENSMUSG00000025582.4|neuronal pentraxin 1
mm10_v2_chr12_+_44328882_44328954	2.13348	Gli1	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr3_+_68494208_68494268	2.01643	Gli1	ENSMUST00000182719.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr8_+_54954728_54954820	1.91748	Gli1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr1_-_56972437_56972502	1.89177	Gli1	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr5_+_5573952_5574013	1.85593	Gli1	ENSMUST00000101627.2|Gm8773|ENSMUSG00000073234.2|predicted gene 8773
mm10_v2_chr15_-_78544345_78544345	1.75488	Gli1	ENSMUST00000053239.2|Sstr3|ENSMUSG00000044933.2|somatostatin receptor 3
mm10_v2_chr18_-_43373248_43373272	1.73257	Gli1	ENSMUST00000118043.1|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr13_+_109685994_109686156	1.61611	Gli1	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr6_-_28830345_28830345	1.59887	Gli1	ENSMUST00000171353.1|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr1_-_25228814_25228834	1.54213	Gli1	ENSMUST00000126626.1|Bai3|ENSMUSG00000033569.11|brain-specific angiogenesis inhibitor 3
mm10_v2_chr13_+_5861489_5861501	1.5187	Gli1	ENSMUST00000000080.6|Klf6|ENSMUSG00000000078.6|Kruppel-like factor 6
mm10_v2_chr6_+_108213086_108213123	1.45237	Gli1	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr7_+_73391160_73391296	1.43562	Gli1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr6_+_107529717_107529780	1.34887	Gli1	ENSMUST00000049285.8|Lrrn1|ENSMUSG00000034648.8|leucine rich repeat protein 1, neuronal
mm10_v2_chr2_-_92434027_92434053	1.27171	Gli1	ENSMUST00000111278.1|Cry2|ENSMUSG00000068742.5|cryptochrome 2 (photolyase-like) 	ENSMUST00000090559.5|Cry2|ENSMUSG00000068742.5|cryptochrome 2 (photolyase-like)
mm10_v2_chr1_+_72824482_72824503	1.25378	Gli1	ENSMUST00000047328.4|Igfbp2|ENSMUSG00000039323.12|insulin-like growth factor binding protein 2
mm10_v2_chr10_+_69534039_69534070	1.24946	Gli1	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr17_-_24209377_24209416	1.21177	Gli1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr4_+_106561027_106561038	1.12916	Gli1	ENSMUST00000047973.3|Dhcr24|ENSMUSG00000034926.3|24-dehydrocholesterol reductase
mm10_v2_chrX_+_101299143_101299201	1.12754	Gli1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr17_+_34187545_34187571	1.11858	Gli1	ENSMUST00000170086.1|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr1_+_152954966_152955101	1.09374	Gli1	ENSMUST00000043313.8|Nmnat2|ENSMUSG00000042751.8|nicotinamide nucleotide adenylyltransferase 2
mm10_v2_chrX_+_159303266_159303281	1.06331	Gli1	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr2_-_30801698_30801742	1.04574	Gli1	ENSMUST00000050003.8|1700001O22Rik|ENSMUSG00000044320.8|RIKEN cDNA 1700001O22 gene
mm10_v2_chr10_+_40883819_40883862	1.04111	Gli1	ENSMUST00000105509.1|Wasf1|ENSMUSG00000019831.8|WAS protein family, member 1
mm10_v2_chr13_-_117025505_117025541	1.01739	Gli1	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr4_-_58553311_58553357	0.996314	Gli1	ENSMUST00000107571.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000055018.4|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr1_-_133801031_133801041	0.980306	Gli1	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr5_-_32746317_32746411	0.952834	Gli1	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr14_+_25607797_25607838	0.945299	Gli1	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr17_+_34187789_34187828	0.936293	Gli1	ENSMUST00000041633.8|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr2_+_20737306_20737321	0.917738	Gli1	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr1_-_64121389_64121452	0.915183	Gli1	ENSMUST00000055001.3|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr4_-_58553553_58553898	0.89624	Gli1	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr8_-_64733534_64733554	0.875565	Gli1	ENSMUST00000141021.1|Sc4mol|ENSMUSG00000031604.4|sterol-C4-methyl oxidase-like
mm10_v2_chr2_-_93046053_93046172	0.870366	Gli1	ENSMUST00000111272.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000178666.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000147339.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11
mm10_v2_chrX_-_60893430_60893440	0.858397	Gli1	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr10_+_69534208_69534222	0.840228	Gli1	ENSMUST00000182439.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092434.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092432.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092431.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000054167.8|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000047061.6|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_-_63421739_63421739	0.824575	Gli1	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr4_-_58553184_58553261	0.819927	Gli1	ENSMUST00000145361.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr9_+_45954101_45954101	0.813453	Gli1	ENSMUST00000181487.1|A830035O19Rik|ENSMUSG00000097813.1|RIKEN cDNA A830035O19 gene
mm10_v2_chrX_+_101299207_101299218	0.808829	Gli1	ENSMUST00000065858.2|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chrX_+_155262443_155262481	0.797436	Gli1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr3_+_45378396_45378413	0.793478	Gli1	ENSMUST00000166126.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000170695.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10 	ENSMUST00000171554.1|Pcdh10|ENSMUSG00000049100.9|protocadherin 10
mm10_v2_chr2_+_119351222_119351233	0.786911	Gli1	ENSMUST00000028780.3|Chac1|ENSMUSG00000027313.3|ChaC, cation transport regulator 1
mm10_v2_chrX_-_59567348_59567472	0.785985	Gli1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr16_-_91011029_91011069	0.785015	Gli1	ENSMUST00000130813.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr11_-_42182163_42182222	0.76834	Gli1	ENSMUST00000153147.1|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm10_v2_chr14_-_41008256_41008275	0.753041	Gli1	ENSMUST00000136661.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A
mm10_v2_chr10_+_69533803_69533848	0.69662	Gli1	ENSMUST00000182155.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183169.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183148.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chrX_-_59568068_59568094	0.692963	Gli1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr17_+_37045963_37045975	0.690114	Gli1	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr2_+_129800451_129800526	0.687237	Gli1	ENSMUST00000165413.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35 	ENSMUST00000166282.2|Stk35|ENSMUSG00000037885.12|serine/threonine kinase 35
mm10_v2_chr11_-_42000284_42000356	0.677038	Gli1	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr18_-_70141568_70141622	0.675629	Gli1	ENSMUST00000121693.1|Rab27b|ENSMUSG00000024511.9|RAB27b, member RAS oncogene family
mm10_v2_chr6_-_113531575_113531667	0.649897	Gli1	ENSMUST00000032425.5|Emc3|ENSMUSG00000030286.5|ER membrane protein complex subunit 3
mm10_v2_chr11_+_97840780_97840780	0.646236	Gli1	ENSMUST00000054783.4|B230217C12Rik|ENSMUSG00000089676.3|RIKEN cDNA B230217C12 gene
mm10_v2_chr6_+_95117740_95117880	0.63577	Gli1	ENSMUST00000032107.7|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8 	ENSMUST00000119582.1|Kbtbd8|ENSMUSG00000030031.8|kelch repeat and BTB (POZ) domain containing 8
mm10_v2_chr11_-_42000532_42000592	0.613017	Gli1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr5_-_115300957_115300999	0.611184	Gli1	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr11_+_80300866_80300912	0.606014	Gli1	ENSMUST00000017836.7|Rhbdl3|ENSMUSG00000017692.8|rhomboid, veinlet-like 3 (Drosophila)
mm10_v2_chr5_-_115300912_115300944	0.601849	Gli1	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr1_+_153900572_153900606	0.594737	Gli1	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr19_+_55316313_55316367	0.584105	Gli1	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chrX_+_94234594_94234604	0.578511	Gli1	ENSMUST00000153900.1|Klhl15|ENSMUSG00000043929.10|kelch-like 15
mm10_v2_chr9_+_50752758_50752894	0.574998	Gli1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr2_-_103797617_103797662	0.561988	Gli1	ENSMUST00000028607.6|Caprin1|ENSMUSG00000027184.8|cell cycle associated protein 1
mm10_v2_chr5_-_32746272_32746313	0.534662	Gli1	ENSMUST00000120591.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr14_+_60378242_60378292	0.533112	Gli1	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chr18_-_35662180_35662195	0.526865	Gli1	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr4_-_41275091_41275144	0.520843	Gli1	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr2_+_106693185_106693278	0.512641	Gli1	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr2_+_181520533_181520563	0.511544	Gli1	ENSMUST00000108797.1|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr18_+_37355271_37355271	0.508286	Gli1	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr7_-_138397704_138397786	0.504405	Gli1	ENSMUST00000160436.1|Tcerg1l|ENSMUSG00000091002.2|transcription elongation regulator 1-like
mm10_v2_chr5_-_122989086_122989111	0.494561	Gli1	ENSMUST00000046073.9|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr9_+_104063678_104063710	0.483551	Gli1	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr11_-_69920892_69920966	0.47346	Gli1	ENSMUST00000152589.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108612.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108611.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr2_+_119034783_119034869	0.468221	Gli1	ENSMUST00000028796.1|Rpusd2|ENSMUSG00000027324.1|RNA pseudouridylate synthase domain containing 2
mm10_v2_chr2_+_29890534_29890545	0.466212	Gli1	ENSMUST00000113764.3|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr7_+_141216626_141216700	0.460348	Gli1	ENSMUST00000141804.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 	ENSMUST00000148975.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm10_v2_chr5_-_115436508_115436606	0.445271	Gli1	ENSMUST00000078701.3|4930430O22Rik|ENSMUSG00000057354.3|RIKEN cDNA 4930430O22 gene
mm10_v2_chr4_-_43454600_43454635	0.441211	Gli1	ENSMUST00000098105.3|Cd72|ENSMUSG00000028459.5|CD72 antigen 	ENSMUST00000098104.3|Cd72|ENSMUSG00000028459.5|CD72 antigen 	ENSMUST00000030179.4|Cd72|ENSMUSG00000028459.5|CD72 antigen
mm10_v2_chr2_-_152830615_152830680	0.44039	Gli1	ENSMUST00000146380.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134902.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134357.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000109820.3|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr17_-_84790517_84790585	0.439664	Gli1	ENSMUST00000112308.2|Lrpprc|ENSMUSG00000024120.6|leucine-rich PPR-motif containing
mm10_v2_chr2_-_104493690_104493753	0.40171	Gli1	ENSMUST00000111124.1|Hipk3|ENSMUSG00000027177.8|homeodomain interacting protein kinase 3
mm10_v2_chr5_-_122989260_122989306	0.388831	Gli1	ENSMUST00000118027.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr1_-_153900198_153900210	0.387487	Gli1	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr6_+_28423539_28423640	0.384503	Gli1	ENSMUST00000020717.5|Arf5|ENSMUSG00000020440.7|ADP-ribosylation factor 5 	ENSMUST00000169841.1|Arf5|ENSMUSG00000020440.7|ADP-ribosylation factor 5
mm10_v2_chr5_-_146963742_146963805	0.383351	Gli1	ENSMUST00000125217.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110564.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000066675.3|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000016654.2|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110566.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000140526.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3
mm10_v2_chr8_+_70501116_70501172	0.369378	Gli1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr9_-_110117379_110117445	0.356647	Gli1	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr2_+_181520485_181520531	0.349349	Gli1	ENSMUST00000072334.5|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr15_-_80264276_80264322	0.349177	Gli1	ENSMUST00000052499.7|Rps19bp1|ENSMUSG00000051518.7|ribosomal protein S19 binding protein 1
mm10_v2_chr4_-_148130678_148130706	0.33865	Gli1	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr17_-_57031468_57031538	0.333839	Gli1	ENSMUST00000007814.8|Khsrp|ENSMUSG00000007670.9|KH-type splicing regulatory protein
mm10_v2_chr4_-_40948196_40948296	0.329491	Gli1	ENSMUST00000030125.4|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1 	ENSMUST00000108089.1|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1
mm10_v2_chr4_-_133874682_133874731	0.321142	Gli1	ENSMUST00000168974.2|Rps6ka1|ENSMUSG00000003644.11|ribosomal protein S6 kinase polypeptide 1
mm10_v2_chr15_+_99392948_99393022	0.318711	Gli1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr15_-_56694525_56694554	0.309702	Gli1	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr2_+_29889720_29889753	0.298286	Gli1	ENSMUST00000113767.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr2_+_157560078_157560130	0.297706	Gli1	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr4_+_108847827_108847895	0.270074	Gli1	ENSMUST00000102738.2|Kti12|ENSMUSG00000073775.3|KTI12 homolog, chromatin associated (S. cerevisiae)
mm10_v2_chr11_+_51619731_51619813	0.260766	Gli1	ENSMUST00000127405.1|Nhp2|ENSMUSG00000001056.3|NHP2 ribonucleoprotein
mm10_v2_chr16_-_90284412_90284498	0.258495	Gli1	ENSMUST00000039280.7|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
mm10_v2_chr2_-_152831112_152831326	0.258417	Gli1	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr14_+_19751257_19751292	0.249253	Gli1	ENSMUST00000022340.3|Nid2|ENSMUSG00000021806.3|nidogen 2
mm10_v2_chr13_+_54575020_54575093	0.239858	Gli1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr2_+_29890063_29890081	0.236927	Gli1	ENSMUST00000028128.6|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr15_+_99392882_99392903	0.230069	Gli1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr3_+_88553716_88553806	0.229446	Gli1	ENSMUST00000008748.6|Ubqln4|ENSMUSG00000008604.6|ubiquilin 4
mm10_v2_chr11_+_77763246_77763339	0.220486	Gli1	ENSMUST00000108375.2|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr6_+_37870786_37870882	0.210165	Gli1	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr13_-_58385190_58385242	0.207584	Gli1	ENSMUST00000022032.5|2210016F16Rik|ENSMUSG00000021550.5|RIKEN cDNA 2210016F16 gene
mm10_v2_chr1_-_191907527_191907527	0.207397	Gli1	ENSMUST00000069573.5|1700034H15Rik|ENSMUSG00000055833.8|RIKEN cDNA 1700034H15 gene
mm10_v2_chr4_-_43454582_43454587	0.20257	Gli1	ENSMUST00000107925.1|Cd72|ENSMUSG00000028459.5|CD72 antigen
mm10_v2_chr5_-_110779937_110779967	0.199965	Gli1	ENSMUST00000112426.1|Pus1|ENSMUSG00000029507.10|pseudouridine synthase 1
mm10_v2_chr19_-_3575708_3575756	0.196142	Gli1	ENSMUST00000113997.2|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000025846.8|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000172362.1|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3
mm10_v2_chr13_+_54575008_54575017	0.190256	Gli1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr2_+_76369967_76370024	0.189624	Gli1	ENSMUST00000046389.4|Rbm45|ENSMUSG00000042369.8|RNA binding motif protein 45
mm10_v2_chr4_-_43454563_43454576	0.187697	Gli1	ENSMUST00000107926.1|Cd72|ENSMUSG00000028459.5|CD72 antigen
mm10_v2_chr12_-_112673944_112674086	0.186976	Gli1	ENSMUST00000130342.1|Akt1|ENSMUSG00000001729.8|thymoma viral proto-oncogene 1
mm10_v2_chr4_+_139193996_139194133	0.177647	Gli1	ENSMUST00000030518.9|Capzb|ENSMUSG00000028745.12|capping protein (actin filament) muscle Z-line, beta
mm10_v2_chr2_+_29890096_29890156	0.176783	Gli1	ENSMUST00000113762.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113765.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr2_-_29253001_29253013	0.171367	Gli1	ENSMUST00000071201.4|Ntng2|ENSMUSG00000035513.13|netrin G2
mm10_v2_chr4_+_117096049_117096083	0.170842	Gli1	ENSMUST00000030443.5|Ptch2|ENSMUSG00000028681.5|patched homolog 2
mm10_v2_chrX_+_119927196_119927225	0.157233	Gli1	ENSMUST00000040961.2|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5 	ENSMUST00000113366.1|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5
mm10_v2_chr16_-_56024628_56024668	0.156902	Gli1	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr9_+_86695542_86695542	0.155578	Gli1	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr12_+_24498570_24498587	0.15194	Gli1	ENSMUST00000075954.7|Taf1b|ENSMUSG00000059669.7|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
mm10_v2_chr17_+_56326045_56326097	0.144686	Gli1	ENSMUST00000139679.1|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000025036.4|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000086835.5|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B
mm10_v2_chr5_-_122900267_122900377	0.135177	Gli1	ENSMUST00000031435.7|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr7_+_28982832_28982892	0.133191	Gli1	ENSMUST00000085835.6|Map4k1|ENSMUSG00000037337.10|mitogen-activated protein kinase kinase kinase kinase 1
mm10_v2_chr4_+_123233556_123233556	0.129053	Gli1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr19_-_6084679_6084693	0.127009	Gli1	ENSMUST00000161548.1|Zfpl1|ENSMUSG00000024792.2|zinc finger like protein 1
mm10_v2_chr2_+_29889785_29889895	0.119922	Gli1	ENSMUST00000113763.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113757.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113756.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000133233.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113759.2|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000113755.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000137558.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2 	ENSMUST00000046571.7|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr18_+_37477768_37477835	0.116107	Gli1	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr4_+_74251928_74251990	0.111622	Gli1	ENSMUST00000030102.5|Kdm4c|ENSMUSG00000028397.7|lysine (K)-specific demethylase 4C
mm10_v2_chr2_+_85037448_85037530	0.106899	Gli1	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr11_-_78245942_78245987	0.101454	Gli1	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr15_-_100584075_100584075	0.0969019	Gli1	ENSMUST00000184908.1|POU6F1|ENSMUSG00000098598.1|POU domain, class 6, transcription factor 1 (Pou6f1), mRNA
mm10_v2_chr10_+_93488766_93488774	0.0966726	Gli1	ENSMUST00000129421.1|Hal|ENSMUSG00000020017.8|histidine ammonia lyase
mm10_v2_chr9_+_110305185_110305229	0.0788023	Gli1	ENSMUST00000068071.7|Elp6|ENSMUSG00000054836.8|elongator acetyltransferase complex subunit 6
mm10_v2_chr6_+_17463826_17463829	0.0770424	Gli1	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr11_+_115420059_115420128	0.0696349	Gli1	ENSMUST00000103035.3|Kctd2|ENSMUSG00000016940.12|potassium channel tetramerisation domain containing 2
mm10_v2_chr7_-_6331235_6331290	0.068589	Gli1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr2_+_85037212_85037302	0.0673619	Gli1	ENSMUST00000077798.6|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr8_-_72213636_72213636	0.0604002	Gli1	ENSMUST00000109987.1|Gm11034|ENSMUSG00000079016.1|predicted gene 11034
mm10_v2_chr11_-_115419917_115419962	0.0560422	Gli1	ENSMUST00000106537.1|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000043931.2|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000073791.3|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm10_v2_chr15_-_100669512_100669529	0.0386211	Gli1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_-_45955465_45955494	0.0356197	Gli1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr14_+_55560480_55560533	0.0345475	Gli1	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr13_+_6548154_6548174	0.0341676	Gli1	ENSMUST00000021611.8|Pitrm1|ENSMUSG00000021193.9|pitrilysin metallepetidase 1
mm10_v2_chr2_+_164879358_164879398	0.0235091	Gli1	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr4_-_155863362_155863362	0.0221472	Gli1	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr17_-_89910449_89910449	0.0199261	Gli1	ENSMUST00000086423.4|Gm10184|ENSMUSG00000066878.4|predicted pseudogene 10184
mm10_v2_chr11_+_70214105_70214132	0.0198318	Gli1	ENSMUST00000094055.3|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11 	ENSMUST00000136328.1|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11 	ENSMUST00000126296.1|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11 	ENSMUST00000153993.2|Slc16a11|ENSMUSG00000040938.10|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm10_v2_chr13_+_81783220_81783307	0.0153382	Gli1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr4_+_40948401_40948412	0.00953917	Gli1	ENSMUST00000030128.5|Chmp5|ENSMUSG00000028419.5|charged multivesicular body protein 5
mm10_v2_chr4_+_133011506_133011546	0.00512911	Gli1	ENSMUST00000105915.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1 	ENSMUST00000105916.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1
mm10_v2_chr11_+_78245743_78245821	0.00350714	Gli1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr11_-_45955183_45955193	0.0027958	Gli1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr7_+_24370255_24370312	0.00231223	Gli1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
