mm10_v2_chr16_+_91269759_91269778	5.7039	Gli3_Zic1	ENSMUST00000056882.5|Olig1|ENSMUSG00000046160.5|oligodendrocyte transcription factor 1
mm10_v2_chr8_+_70501116_70501172	4.65861	Gli3_Zic1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr11_-_42182163_42182222	4.25839	Gli3_Zic1	ENSMUST00000153147.1|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm10_v2_chr1_+_195017399_195017431	3.94705	Gli3_Zic1	ENSMUST00000181273.1|A330023F24Rik|ENSMUSG00000096929.1|RIKEN cDNA A330023F24 gene
mm10_v2_chr7_+_5056706_5056741	3.91435	Gli3_Zic1	ENSMUST00000144802.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr2_-_155945282_155945367	3.86698	Gli3_Zic1	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr6_+_17463749_17463809	3.80362	Gli3_Zic1	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr7_+_5056856_5056916	3.75684	Gli3_Zic1	ENSMUST00000131368.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106 	ENSMUST00000123956.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr17_-_68004075_68004140	3.74756	Gli3_Zic1	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr7_+_5057161_5057197	3.70431	Gli3_Zic1	ENSMUST00000045543.5|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr8_-_105966038_105966120	2.93586	Gli3_Zic1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr13_+_118714678_118714701	2.84319	Gli3_Zic1	ENSMUST00000022246.8|Fgf10|ENSMUSG00000021732.8|fibroblast growth factor 10
mm10_v2_chr8_+_76902277_76902476	2.69239	Gli3_Zic1	ENSMUST00000109912.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000128862.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000109911.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr9_-_56418023_56418052	2.62663	Gli3_Zic1	ENSMUST00000061552.8|C230081A13Rik|ENSMUSG00000074305.3|RIKEN cDNA C230081A13 gene
mm10_v2_chr7_-_142657466_142657496	2.62241	Gli3_Zic1	ENSMUST00000097936.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2 	ENSMUST00000000033.5|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr15_-_95528228_95528266	2.52169	Gli3_Zic1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr6_+_17463826_17463829	2.43646	Gli3_Zic1	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr6_+_110645572_110645588	2.37226	Gli3_Zic1	ENSMUST00000071076.6|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7 	ENSMUST00000172951.1|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7
mm10_v2_chr3_+_68494208_68494268	2.32336	Gli3_Zic1	ENSMUST00000182719.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr9_-_54661870_54661912	2.31333	Gli3_Zic1	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr14_-_55560340_55560406	2.25007	Gli3_Zic1	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr2_-_36104060_36104073	2.23795	Gli3_Zic1	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr11_-_70229677_70229761	2.17294	Gli3_Zic1	ENSMUST00000153449.1|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B 	ENSMUST00000000326.5|Bcl6b|ENSMUSG00000000317.5|B cell CLL/lymphoma 6, member B
mm10_v2_chr15_-_95528702_95528777	2.11873	Gli3_Zic1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr9_+_50752758_50752894	2.11254	Gli3_Zic1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr13_-_117025505_117025541	2.10262	Gli3_Zic1	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chrX_-_7574120_7574312	2.01735	Gli3_Zic1	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr6_+_17463927_17464071	1.97103	Gli3_Zic1	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr1_-_56972437_56972502	1.9369	Gli3_Zic1	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr3_+_31149934_31149958	1.8859	Gli3_Zic1	ENSMUST00000046174.6|Cldn11|ENSMUSG00000037625.6|claudin 11
mm10_v2_chr10_-_127341583_127341614	1.88065	Gli3_Zic1	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chr5_+_30588078_30588171	1.87879	Gli3_Zic1	ENSMUST00000066295.2|Kcnk3|ENSMUSG00000049265.6|potassium channel, subfamily K, member 3
mm10_v2_chr11_+_93098404_93098437	1.87541	Gli3_Zic1	ENSMUST00000107859.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000042943.6|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107861.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107858.2|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10
mm10_v2_chr7_-_84605819_84605827	1.8328	Gli3_Zic1	ENSMUST00000032865.9|Fah|ENSMUSG00000030630.9|fumarylacetoacetate hydrolase
mm10_v2_chr7_-_19698383_19698407	1.82327	Gli3_Zic1	ENSMUST00000173739.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E
mm10_v2_chr11_-_42000284_42000356	1.79443	Gli3_Zic1	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr17_-_24650270_24650311	1.76166	Gli3_Zic1	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr4_+_124657646_124657656	1.74699	Gli3_Zic1	ENSMUST00000053491.7|Pou3f1|ENSMUSG00000090125.2|POU domain, class 3, transcription factor 1
mm10_v2_chr1_-_180483410_180483504	1.74478	Gli3_Zic1	ENSMUST00000136521.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene 	ENSMUST00000179826.1|6330403A02Rik|ENSMUSG00000053963.6|RIKEN cDNA 6330403A02 gene
mm10_v2_chr11_-_42000532_42000592	1.72923	Gli3_Zic1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr11_+_101246405_101246567	1.72146	Gli3_Zic1	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr8_-_105637403_105637497	1.70265	Gli3_Zic1	ENSMUST00000182046.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr4_-_136956784_136956871	1.7012	Gli3_Zic1	ENSMUST00000030420.8|Epha8|ENSMUSG00000028661.8|Eph receptor A8
mm10_v2_chr2_+_70562007_70562042	1.69937	Gli3_Zic1	ENSMUST00000094934.4|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr12_+_109545390_109545443	1.63852	Gli3_Zic1	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr6_-_113531575_113531667	1.6272	Gli3_Zic1	ENSMUST00000032425.5|Emc3|ENSMUSG00000030286.5|ER membrane protein complex subunit 3
mm10_v2_chr17_-_24209377_24209416	1.62289	Gli3_Zic1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr13_+_81783220_81783307	1.58446	Gli3_Zic1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr6_+_86195214_86195251	1.57506	Gli3_Zic1	ENSMUST00000032066.9|Tgfa|ENSMUSG00000029999.9|transforming growth factor alpha
mm10_v2_chr6_+_17491216_17491242	1.57398	Gli3_Zic1	ENSMUST00000080469.5|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr12_+_73997749_73997817	1.45882	Gli3_Zic1	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr8_-_105637350_105637392	1.43719	Gli3_Zic1	ENSMUST00000182863.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr11_+_101246960_101247093	1.42535	Gli3_Zic1	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr6_-_35308110_35308136	1.28715	Gli3_Zic1	ENSMUST00000031868.4|Slc13a4|ENSMUSG00000029843.4|solute carrier family 13 (sodium/sulfate symporters), member 4
mm10_v2_chr18_-_38601268_38601355	1.28179	Gli3_Zic1	ENSMUST00000025295.6|Spry4|ENSMUSG00000024427.6|sprouty homolog 4 (Drosophila)
mm10_v2_chr9_-_123678782_123678850	1.21854	Gli3_Zic1	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr4_+_48045144_48045160	1.20528	Gli3_Zic1	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chrX_-_167382747_167382760	1.19071	Gli3_Zic1	ENSMUST00000026839.4|Prps2|ENSMUSG00000025742.5|phosphoribosyl pyrophosphate synthetase 2
mm10_v2_chr19_-_32388462_32388512	1.17592	Gli3_Zic1	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr19_-_4698315_4698315	1.17453	Gli3_Zic1	ENSMUST00000096325.3|Gm960|ENSMUSG00000071691.4|predicted gene 960
mm10_v2_chr5_+_71699918_71699949	1.16371	Gli3_Zic1	ENSMUST00000031122.7|Gabrb1|ENSMUSG00000029212.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm10_v2_chr8_-_69887687_69887687	1.15857	Gli3_Zic1	ENSMUST00000057831.7|Cilp2|ENSMUSG00000044006.8|cartilage intermediate layer protein 2
mm10_v2_chr8_+_54954728_54954820	1.15466	Gli3_Zic1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr9_+_86695542_86695542	1.12332	Gli3_Zic1	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr7_+_35119285_35119301	1.09401	Gli3_Zic1	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr14_+_55560480_55560533	1.08302	Gli3_Zic1	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr5_-_147725988_147726023	1.07036	Gli3_Zic1	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr13_-_54611274_54611297	1.06564	Gli3_Zic1	ENSMUST00000049575.7|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr14_-_30353468_30353535	1.06215	Gli3_Zic1	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr8_+_68880491_68880564	1.04981	Gli3_Zic1	ENSMUST00000015712.8|Lpl|ENSMUSG00000015568.9|lipoprotein lipase
mm10_v2_chr11_+_87760533_87760587	1.03197	Gli3_Zic1	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr11_+_75655873_75655918	1.02337	Gli3_Zic1	ENSMUST00000108431.2|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr16_-_28445227_28445395	1.0218	Gli3_Zic1	ENSMUST00000100024.1|Fgf12|ENSMUSG00000022523.9|fibroblast growth factor 12
mm10_v2_chr7_+_57591147_57591191	1.01875	Gli3_Zic1	ENSMUST00000039697.7|Gabrb3|ENSMUSG00000033676.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm10_v2_chr2_+_32646586_32646602	1.01422	Gli3_Zic1	ENSMUST00000009705.7|Eng|ENSMUSG00000026814.10|endoglin 	ENSMUST00000167841.1|Eng|ENSMUSG00000026814.10|endoglin
mm10_v2_chr9_-_123678873_123678885	1.01289	Gli3_Zic1	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr4_+_144893077_144893103	0.987787	Gli3_Zic1	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr9_+_62858085_62858138	0.98029	Gli3_Zic1	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr6_-_125494754_125494791	0.943173	Gli3_Zic1	ENSMUST00000032492.8|Cd9|ENSMUSG00000030342.8|CD9 antigen
mm10_v2_chr6_+_125494419_125494454	0.914265	Gli3_Zic1	ENSMUST00000181266.1|Gm26728|ENSMUSG00000097114.1|predicted gene, 26728
mm10_v2_chr6_-_118780324_118780324	0.908899	Gli3_Zic1	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr5_+_138995038_138995066	0.896317	Gli3_Zic1	ENSMUST00000100518.2|6330403L08Rik|ENSMUSG00000075585.2|RIKEN cDNA 6330403L08 gene
mm10_v2_chr13_-_54611332_54611387	0.893483	Gli3_Zic1	ENSMUST00000091609.4|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr7_-_100656953_100657103	0.892822	Gli3_Zic1	ENSMUST00000107046.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107045.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000139708.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr2_-_29253001_29253013	0.888313	Gli3_Zic1	ENSMUST00000071201.4|Ntng2|ENSMUSG00000035513.13|netrin G2
mm10_v2_chrX_+_73064787_73064787	0.887562	Gli3_Zic1	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr1_-_22805994_22806007	0.8871	Gli3_Zic1	ENSMUST00000097808.4|Rims1|ENSMUSG00000041670.9|regulating synaptic membrane exocytosis 1
mm10_v2_chr10_+_80249441_80249468	0.875759	Gli3_Zic1	ENSMUST00000020361.6|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr16_-_46496955_46496986	0.870923	Gli3_Zic1	ENSMUST00000023335.6|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000023334.8|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr5_-_138994935_138995037	0.865012	Gli3_Zic1	ENSMUST00000046901.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha 	ENSMUST00000076095.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha
mm10_v2_chrX_-_150812715_150812805	0.863945	Gli3_Zic1	ENSMUST00000112697.3|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chrX_-_59568068_59568094	0.853521	Gli3_Zic1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr9_-_54661666_54661716	0.852896	Gli3_Zic1	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr1_-_153900198_153900210	0.850233	Gli3_Zic1	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr9_+_110305185_110305229	0.830479	Gli3_Zic1	ENSMUST00000068071.7|Elp6|ENSMUSG00000054836.8|elongator acetyltransferase complex subunit 6
mm10_v2_chr11_+_51289920_51290011	0.824342	Gli3_Zic1	ENSMUST00000102765.2|Col23a1|ENSMUSG00000063564.7|collagen, type XXIII, alpha 1
mm10_v2_chr6_-_28830345_28830345	0.819911	Gli3_Zic1	ENSMUST00000171353.1|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr1_-_168431896_168431905	0.818074	Gli3_Zic1	ENSMUST00000176540.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr19_-_5085483_5085531	0.814008	Gli3_Zic1	ENSMUST00000140389.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000151413.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000077066.7|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A
mm10_v2_chr16_+_23107413_23107479	0.812798	Gli3_Zic1	ENSMUST00000023599.6|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2 	ENSMUST00000168891.1|Eif4a2|ENSMUSG00000022884.8|eukaryotic translation initiation factor 4A2
mm10_v2_chr8_-_85840877_85840957	0.811654	Gli3_Zic1	ENSMUST00000034140.7|Itfg1|ENSMUSG00000031703.7|integrin alpha FG-GAP repeat containing 1
mm10_v2_chr7_+_99535439_99535498	0.796984	Gli3_Zic1	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr10_+_80249106_80249124	0.793882	Gli3_Zic1	ENSMUST00000105364.1|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr7_-_111779963_111779993	0.789368	Gli3_Zic1	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr11_-_69920892_69920966	0.775391	Gli3_Zic1	ENSMUST00000152589.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108612.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108611.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr4_+_15265798_15265831	0.7642	Gli3_Zic1	ENSMUST00000062684.8|Tmem64|ENSMUSG00000043252.8|transmembrane protein 64
mm10_v2_chr11_+_100415722_100415766	0.764008	Gli3_Zic1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
mm10_v2_chr17_-_15041457_15041559	0.754334	Gli3_Zic1	ENSMUST00000097400.4|Gm3448|ENSMUSG00000079710.3|predicted gene 3448 	ENSMUST00000097398.4|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3 	ENSMUST00000040746.6|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3
mm10_v2_chr9_+_100643605_100643626	0.751887	Gli3_Zic1	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr16_-_46496772_46496883	0.750537	Gli3_Zic1	ENSMUST00000149901.1|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000096052.2|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr10_+_127165118_127165225	0.742127	Gli3_Zic1	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr7_+_130865756_130865812	0.738909	Gli3_Zic1	ENSMUST00000120441.1|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr8_+_46492789_46492832	0.729293	Gli3_Zic1	ENSMUST00000110371.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr7_+_25267669_25267723	0.70853	Gli3_Zic1	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr19_+_42045792_42045897	0.702189	Gli3_Zic1	ENSMUST00000172244.1|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1 	ENSMUST00000081714.4|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1
mm10_v2_chr11_+_69765970_69766027	0.700093	Gli3_Zic1	ENSMUST00000108642.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4 	ENSMUST00000156932.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4
mm10_v2_chr11_+_70647258_70647294	0.693848	Gli3_Zic1	ENSMUST00000037534.7|Rnf167|ENSMUSG00000040746.9|ring finger protein 167
mm10_v2_chr5_-_37824580_37824584	0.689613	Gli3_Zic1	ENSMUST00000063116.9|Msx1|ENSMUSG00000048450.10|msh homeobox 1
mm10_v2_chr7_+_73391160_73391296	0.684355	Gli3_Zic1	ENSMUST00000128471.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr4_+_123183456_123183601	0.681215	Gli3_Zic1	ENSMUST00000126995.1|Hpcal4|ENSMUSG00000046093.3|hippocalcin-like 4
mm10_v2_chr16_+_17561885_17562042	0.676706	Gli3_Zic1	ENSMUST00000171002.1|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6 	ENSMUST00000023441.4|P2rx6|ENSMUSG00000022758.6|purinergic receptor P2X, ligand-gated ion channel, 6
mm10_v2_chr4_+_45848816_45848950	0.673003	Gli3_Zic1	ENSMUST00000107782.1|1300002K09Rik|ENSMUSG00000028327.8|RIKEN cDNA 1300002K09 gene 	ENSMUST00000030011.5|1300002K09Rik|ENSMUSG00000028327.8|RIKEN cDNA 1300002K09 gene
mm10_v2_chr10_+_40349265_40349387	0.670152	Gli3_Zic1	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr16_+_20733104_20733158	0.668393	Gli3_Zic1	ENSMUST00000115423.1|Chrd|ENSMUSG00000006958.7|chordin 	ENSMUST00000007171.6|Chrd|ENSMUSG00000006958.7|chordin
mm10_v2_chr2_+_35282380_35282442	0.660633	Gli3_Zic1	ENSMUST00000028239.6|Gsn|ENSMUSG00000026879.8|gelsolin
mm10_v2_chr6_+_29694204_29694250	0.66003	Gli3_Zic1	ENSMUST00000046750.7|Tspan33|ENSMUSG00000001763.8|tetraspanin 33 	ENSMUST00000115250.3|Tspan33|ENSMUSG00000001763.8|tetraspanin 33
mm10_v2_chr7_-_19770509_19770547	0.6589	Gli3_Zic1	ENSMUST00000003061.7|Bcam|ENSMUSG00000002980.8|basal cell adhesion molecule
mm10_v2_chrX_-_150812932_150813154	0.657627	Gli3_Zic1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr15_+_78899755_78899775	0.655823	Gli3_Zic1	ENSMUST00000001226.3|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000061239.7|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000109698.2|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1
mm10_v2_chr11_+_78245743_78245821	0.655524	Gli3_Zic1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr1_-_75506331_75506402	0.649599	Gli3_Zic1	ENSMUST00000113567.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1 	ENSMUST00000113565.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr17_+_37050631_37050674	0.646695	Gli3_Zic1	ENSMUST00000172792.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1 	ENSMUST00000174347.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr4_-_4138432_4138480	0.646374	Gli3_Zic1	ENSMUST00000070375.7|Penk|ENSMUSG00000045573.9|preproenkephalin
mm10_v2_chr16_-_85550417_85550432	0.645579	Gli3_Zic1	ENSMUST00000175700.1|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1 	ENSMUST00000114174.2|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1
mm10_v2_chr12_+_103314944_103314962	0.643203	Gli3_Zic1	ENSMUST00000179363.1|Fam181a|ENSMUSG00000096753.1|family with sequence similarity 181, member A
mm10_v2_chr4_-_154899077_154899135	0.63903	Gli3_Zic1	ENSMUST00000030935.3|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B 	ENSMUST00000132281.1|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B
mm10_v2_chr9_+_100643755_100643770	0.622383	Gli3_Zic1	ENSMUST00000133388.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr9_-_58158498_58158554	0.618875	Gli3_Zic1	ENSMUST00000168864.2|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr6_-_85502858_85502965	0.616537	Gli3_Zic1	ENSMUST00000161546.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41 	ENSMUST00000161078.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chr19_-_6084679_6084693	0.614512	Gli3_Zic1	ENSMUST00000161548.1|Zfpl1|ENSMUSG00000024792.2|zinc finger like protein 1
mm10_v2_chr2_-_144527341_144527424	0.610503	Gli3_Zic1	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr7_+_130865835_130865942	0.610351	Gli3_Zic1	ENSMUST00000075181.4|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENSMUST00000048180.5|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr6_-_85502980_85503034	0.607166	Gli3_Zic1	ENSMUST00000159062.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chr17_+_25727726_25727797	0.606719	Gli3_Zic1	ENSMUST00000047273.1|Rpusd1|ENSMUSG00000041199.2|RNA pseudouridylate synthase domain containing 1
mm10_v2_chr7_-_142372210_142372292	0.605867	Gli3_Zic1	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr5_-_34187670_34187749	0.604273	Gli3_Zic1	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr13_+_54949388_54949481	0.600143	Gli3_Zic1	ENSMUST00000026994.7|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans) 	ENSMUST00000109994.2|Unc5a|ENSMUSG00000025876.9|unc-5 homolog A (C. elegans)
mm10_v2_chr7_-_142656018_142656058	0.594481	Gli3_Zic1	ENSMUST00000178921.1|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr15_-_78718113_78718113	0.590623	Gli3_Zic1	ENSMUST00000088592.4|Elfn2|ENSMUSG00000043460.6|leucine rich repeat and fibronectin type III, extracellular 2
mm10_v2_chr11_+_73018986_73019047	0.586473	Gli3_Zic1	ENSMUST00000092937.6|Camkk1|ENSMUSG00000020785.11|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm10_v2_chr8_-_105295934_105296098	0.586226	Gli3_Zic1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr9_+_100643448_100643542	0.584333	Gli3_Zic1	ENSMUST00000146312.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1 	ENSMUST00000129269.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr1_-_165460430_165460487	0.582432	Gli3_Zic1	ENSMUST00000027856.7|Dcaf6|ENSMUSG00000026571.7|DDB1 and CUL4 associated factor 6
mm10_v2_chr4_+_42949814_42949923	0.58149	Gli3_Zic1	ENSMUST00000037872.3|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5 	ENSMUST00000098112.2|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr4_-_128962420_128962449	0.580344	Gli3_Zic1	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr13_-_49320219_49320311	0.577291	Gli3_Zic1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr14_+_4334763_4334763	0.569233	Gli3_Zic1	ENSMUST00000165466.1|2610042L04Rik|ENSMUSG00000079388.3|RIKEN cDNA 2610042L04 gene
mm10_v2_chr1_+_42697146_42697146	0.559454	Gli3_Zic1	ENSMUST00000054883.2|Pou3f3|ENSMUSG00000045515.2|POU domain, class 3, transcription factor 3
mm10_v2_chr10_+_39612934_39612934	0.556751	Gli3_Zic1	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr8_+_11728105_11728143	0.555898	Gli3_Zic1	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chrX_+_119927196_119927225	0.542609	Gli3_Zic1	ENSMUST00000040961.2|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5 	ENSMUST00000113366.1|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5
mm10_v2_chr5_-_118244861_118245116	0.542588	Gli3_Zic1	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr1_-_134235420_134235443	0.541494	Gli3_Zic1	ENSMUST00000038191.6|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor 	ENSMUST00000086465.4|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr2_+_164879358_164879398	0.538863	Gli3_Zic1	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr3_+_95624971_95625021	0.532398	Gli3_Zic1	ENSMUST00000058230.6|Ensa|ENSMUSG00000038619.6|endosulfine alpha 	ENSMUST00000037983.4|Ensa|ENSMUSG00000038619.6|endosulfine alpha
mm10_v2_chr11_-_60352869_60352905	0.531243	Gli3_Zic1	ENSMUST00000095254.5|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102683.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093048.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093046.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000064019.8|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102682.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken)
mm10_v2_chrX_+_155262443_155262481	0.52523	Gli3_Zic1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr13_-_56895737_56895793	0.524931	Gli3_Zic1	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr16_+_43503607_43503642	0.520744	Gli3_Zic1	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_+_167598384_167598411	0.519168	Gli3_Zic1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr16_-_44016387_44016436	0.516901	Gli3_Zic1	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr6_-_101377897_101378016	0.507526	Gli3_Zic1	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr2_-_77170592_77170645	0.50507	Gli3_Zic1	ENSMUST00000164114.2|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141 	ENSMUST00000049544.7|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141
mm10_v2_chr3_-_101110278_101110294	0.504298	Gli3_Zic1	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr12_-_32953772_32953846	0.504069	Gli3_Zic1	ENSMUST00000180391.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene 	ENSMUST00000181670.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene
mm10_v2_chr2_+_158667119_158667130	0.502711	Gli3_Zic1	ENSMUST00000045503.4|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr14_+_55560904_55560974	0.497729	Gli3_Zic1	ENSMUST00000072530.4|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000128490.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr7_+_128246812_128246948	0.493255	Gli3_Zic1	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr2_+_78869009_78869109	0.490378	Gli3_Zic1	ENSMUST00000028398.7|Ube2e3|ENSMUSG00000027011.8|ubiquitin-conjugating enzyme E2E 3
mm10_v2_chr1_-_134234492_134234578	0.486612	Gli3_Zic1	ENSMUST00000169927.1|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr17_+_37045980_37046080	0.484539	Gli3_Zic1	ENSMUST00000174456.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr15_-_98953541_98953560	0.483483	Gli3_Zic1	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr2_-_168230353_168230386	0.482337	Gli3_Zic1	ENSMUST00000154111.1|Dpm1|ENSMUSG00000078919.4|dolichol-phosphate (beta-D) mannosyltransferase 1
mm10_v2_chr13_+_54575008_54575017	0.480174	Gli3_Zic1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr18_+_86394952_86394968	0.474723	Gli3_Zic1	ENSMUST00000058829.2|Neto1|ENSMUSG00000050321.2|neuropilin (NRP) and tolloid (TLL)-like 1
mm10_v2_chr6_+_43265582_43265681	0.474216	Gli3_Zic1	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chrX_-_59567348_59567472	0.474121	Gli3_Zic1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr7_+_128246953_128246993	0.465586	Gli3_Zic1	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chrX_+_101299207_101299218	0.461739	Gli3_Zic1	ENSMUST00000065858.2|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr19_+_8735808_8735864	0.455369	Gli3_Zic1	ENSMUST00000049424.9|Wdr74|ENSMUSG00000042729.9|WD repeat domain 74
mm10_v2_chr3_+_116007457_116007540	0.4514	Gli3_Zic1	ENSMUST00000029575.5|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2 	ENSMUST00000106501.1|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2
mm10_v2_chr7_-_44306903_44306959	0.451087	Gli3_Zic1	ENSMUST00000004587.9|Clec11a|ENSMUSG00000004473.9|C-type lectin domain family 11, member a
mm10_v2_chr6_+_125009232_125009253	0.446085	Gli3_Zic1	ENSMUST00000112428.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr1_-_168431695_168431750	0.443199	Gli3_Zic1	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr13_-_9764943_9764994	0.442969	Gli3_Zic1	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr1_+_125561010_125561095	0.433571	Gli3_Zic1	ENSMUST00000027580.4|Slc35f5|ENSMUSG00000026342.4|solute carrier family 35, member F5
mm10_v2_chr14_+_3572023_3572023	0.43037	Gli3_Zic1	ENSMUST00000178728.1|Gm3005|ENSMUSG00000095195.1|predicted gene 3005
mm10_v2_chr13_+_54575020_54575093	0.429642	Gli3_Zic1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr13_-_63565520_63565520	0.428419	Gli3_Zic1	ENSMUST00000021921.5|Ptch1|ENSMUSG00000021466.6|patched homolog 1
mm10_v2_chr3_-_116253467_116253484	0.417703	Gli3_Zic1	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr7_-_13034722_13034782	0.412073	Gli3_Zic1	ENSMUST00000005711.4|Chmp2a|ENSMUSG00000033916.4|charged multivesicular body protein 2A
mm10_v2_chr4_+_42950369_42950445	0.407527	Gli3_Zic1	ENSMUST00000084662.5|Dnajb5|ENSMUSG00000036052.8|DnaJ (Hsp40) homolog, subfamily B, member 5
mm10_v2_chr4_-_151108454_151108576	0.406414	Gli3_Zic1	ENSMUST00000105670.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr19_-_5106967_5107023	0.40462	Gli3_Zic1	ENSMUST00000025804.5|Rab1b|ENSMUSG00000024870.5|RAB1B, member RAS oncogene family
mm10_v2_chr7_-_118443549_118443571	0.404087	Gli3_Zic1	ENSMUST00000081574.4|Syt17|ENSMUSG00000058420.5|synaptotagmin XVII
mm10_v2_chr5_+_26817357_26817428	0.402881	Gli3_Zic1	ENSMUST00000071500.6|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr16_-_20241304_20241363	0.39799	Gli3_Zic1	ENSMUST00000040880.7|Map6d1|ENSMUSG00000041205.7|MAP6 domain containing 1
mm10_v2_chr16_-_30550560_30550594	0.396607	Gli3_Zic1	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr7_-_79131018_79131018	0.394069	Gli3_Zic1	ENSMUST00000032827.7|Hapln3|ENSMUSG00000030606.7|hyaluronan and proteoglycan link protein 3
mm10_v2_chr6_+_125009261_125009317	0.392976	Gli3_Zic1	ENSMUST00000112427.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr15_+_103503261_103503298	0.39095	Gli3_Zic1	ENSMUST00000023132.3|Pde1b|ENSMUSG00000022489.5|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm10_v2_chr4_+_106561027_106561038	0.389395	Gli3_Zic1	ENSMUST00000047973.3|Dhcr24|ENSMUSG00000034926.3|24-dehydrocholesterol reductase
mm10_v2_chr4_-_151108244_151108303	0.381266	Gli3_Zic1	ENSMUST00000131948.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr11_-_45955465_45955494	0.377341	Gli3_Zic1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr11_+_85832551_85832551	0.376081	Gli3_Zic1	ENSMUST00000000095.6|Tbx2|ENSMUSG00000000093.6|T-box 2
mm10_v2_chr17_-_84790517_84790585	0.374654	Gli3_Zic1	ENSMUST00000112308.2|Lrpprc|ENSMUSG00000024120.6|leucine-rich PPR-motif containing
mm10_v2_chr6_+_125009113_125009179	0.37076	Gli3_Zic1	ENSMUST00000054553.4|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr14_+_45351473_45351473	0.369508	Gli3_Zic1	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr3_+_27984145_27984314	0.368566	Gli3_Zic1	ENSMUST00000067757.4|Pld1|ENSMUSG00000027695.10|phospholipase D1
mm10_v2_chr1_-_75505641_75505703	0.365654	Gli3_Zic1	ENSMUST00000155084.1|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr11_+_69095217_69095289	0.36496	Gli3_Zic1	ENSMUST00000101004.2|Per1|ENSMUSG00000020893.11|period circadian clock 1
mm10_v2_chr14_+_55561060_55561071	0.356624	Gli3_Zic1	ENSMUST00000117701.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr11_-_69921057_69921085	0.355926	Gli3_Zic1	ENSMUST00000108609.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108608.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000164359.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr13_-_9765137_9765321	0.3554	Gli3_Zic1	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr15_+_99392882_99392903	0.348484	Gli3_Zic1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr6_-_35539765_35539888	0.346469	Gli3_Zic1	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr11_-_86544754_86544805	0.341682	Gli3_Zic1	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr5_-_24730635_24730727	0.340183	Gli3_Zic1	ENSMUST00000068693.5|Wdr86|ENSMUSG00000055235.5|WD repeat domain 86
mm10_v2_chr9_-_44735189_44735213	0.33985	Gli3_Zic1	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr17_+_37045963_37045975	0.338008	Gli3_Zic1	ENSMUST00000025338.9|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chrX_+_101299143_101299201	0.337264	Gli3_Zic1	ENSMUST00000118111.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000130555.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3 	ENSMUST00000151528.1|Nlgn3|ENSMUSG00000031302.10|neuroligin 3
mm10_v2_chr2_+_49451486_49451559	0.336269	Gli3_Zic1	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr9_-_110743653_110743686	0.331246	Gli3_Zic1	ENSMUST00000166716.1|Pth1r|ENSMUSG00000032492.8|parathyroid hormone 1 receptor
mm10_v2_chr7_-_19665005_19665030	0.33053	Gli3_Zic1	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr11_-_116359060_116359103	0.330127	Gli3_Zic1	ENSMUST00000149147.1|Rnf157|ENSMUSG00000052949.8|ring finger protein 157
mm10_v2_chr4_-_70534904_70534987	0.328606	Gli3_Zic1	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr5_-_123721007_123721062	0.326285	Gli3_Zic1	ENSMUST00000031376.7|Zcchc8|ENSMUSG00000029427.7|zinc finger, CCHC domain containing 8
mm10_v2_chr1_-_177796451_177796514	0.318251	Gli3_Zic1	ENSMUST00000016105.8|Adss|ENSMUSG00000015961.8|adenylosuccinate synthetase, non muscle
mm10_v2_chr17_-_27204357_27204447	0.316822	Gli3_Zic1	ENSMUST00000055117.7|Lemd2|ENSMUSG00000044857.7|LEM domain containing 2
mm10_v2_chr2_-_45110336_45110487	0.314101	Gli3_Zic1	ENSMUST00000028229.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2 	ENSMUST00000152232.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr8_+_23139030_23139061	0.313105	Gli3_Zic1	ENSMUST00000121075.1|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr12_+_59066908_59066931	0.312706	Gli3_Zic1	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr7_+_99268338_99268388	0.307664	Gli3_Zic1	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr15_-_89379246_89379262	0.303354	Gli3_Zic1	ENSMUST00000049968.7|Odf3b|ENSMUSG00000047394.7|outer dense fiber of sperm tails 3B
mm10_v2_chr3_-_89245159_89245199	0.302444	Gli3_Zic1	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr17_-_34028044_34028076	0.301361	Gli3_Zic1	ENSMUST00000045467.7|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6 	ENSMUST00000114303.3|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6
mm10_v2_chr8_+_83608175_83608198	0.298488	Gli3_Zic1	ENSMUST00000005620.8|Dnajb1|ENSMUSG00000005483.9|DnaJ (Hsp40) homolog, subfamily B, member 1
mm10_v2_chr14_+_70530819_70530847	0.29659	Gli3_Zic1	ENSMUST00000047331.6|Lgi3|ENSMUSG00000033595.6|leucine-rich repeat LGI family, member 3
mm10_v2_chr7_-_81454751_81454764	0.293412	Gli3_Zic1	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chr15_-_100669512_100669529	0.293383	Gli3_Zic1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr7_-_99626936_99627103	0.292791	Gli3_Zic1	ENSMUST00000178124.1|Gm4980|ENSMUSG00000096606.1|predicted gene 4980
mm10_v2_chr1_-_128103016_128103053	0.286357	Gli3_Zic1	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr18_+_52767994_52768149	0.286226	Gli3_Zic1	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr11_-_45955183_45955193	0.284513	Gli3_Zic1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr10_-_22149270_22149270	0.284327	Gli3_Zic1	ENSMUST00000179054.1|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene 	ENSMUST00000069372.6|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene
mm10_v2_chr13_-_63431737_63431755	0.283424	Gli3_Zic1	ENSMUST00000073029.5|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr15_-_53902472_53902530	0.28251	Gli3_Zic1	ENSMUST00000078673.6|Samd12|ENSMUSG00000058656.6|sterile alpha motif domain containing 12
mm10_v2_chr10_-_67548944_67549001	0.278382	Gli3_Zic1	ENSMUST00000075686.4|Ado|ENSMUSG00000057134.4|2-aminoethanethiol (cysteamine) dioxygenase
mm10_v2_chr6_-_142702259_142702290	0.278035	Gli3_Zic1	ENSMUST00000073173.5|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000111771.1|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000087527.4|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000100827.2|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm10_v2_chr15_+_9071252_9071273	0.276954	Gli3_Zic1	ENSMUST00000100789.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000100790.3|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000067760.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial
mm10_v2_chr19_+_8802486_8802530	0.274879	Gli3_Zic1	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr11_-_78245942_78245987	0.274117	Gli3_Zic1	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr3_-_89245005_89245031	0.272292	Gli3_Zic1	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr10_+_80016901_80016916	0.271121	Gli3_Zic1	ENSMUST00000105373.1|Hmha1|ENSMUSG00000035697.8|histocompatibility (minor) HA-1
mm10_v2_chr2_+_181520485_181520531	0.270438	Gli3_Zic1	ENSMUST00000072334.5|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr11_+_72796164_72796246	0.269314	Gli3_Zic1	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr8_-_71723308_71723357	0.264084	Gli3_Zic1	ENSMUST00000125092.1|Fcho1|ENSMUSG00000070000.7|FCH domain only 1
mm10_v2_chr3_+_97158767_97158820	0.263908	Gli3_Zic1	ENSMUST00000090759.4|Acp6|ENSMUSG00000028093.9|acid phosphatase 6, lysophosphatidic
mm10_v2_chr8_+_23139064_23139105	0.263181	Gli3_Zic1	ENSMUST00000033947.8|Ank1|ENSMUSG00000031543.12|ankyrin 1, erythroid
mm10_v2_chr18_-_35662180_35662195	0.261141	Gli3_Zic1	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr1_+_129273344_129273470	0.260998	Gli3_Zic1	ENSMUST00000073527.6|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B 	ENSMUST00000040311.7|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B
mm10_v2_chr15_+_25984359_25984373	0.259529	Gli3_Zic1	ENSMUST00000061875.6|Zfp622|ENSMUSG00000052253.5|zinc finger protein 622
mm10_v2_chr17_+_34894515_34894573	0.252238	Gli3_Zic1	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr1_+_128103297_128103311	0.251726	Gli3_Zic1	ENSMUST00000036288.4|R3hdm1|ENSMUSG00000056211.7|R3H domain containing 1
mm10_v2_chr12_+_24498570_24498587	0.251646	Gli3_Zic1	ENSMUST00000075954.7|Taf1b|ENSMUSG00000059669.7|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
mm10_v2_chr2_-_45110241_45110265	0.246741	Gli3_Zic1	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr15_+_99392948_99393022	0.244696	Gli3_Zic1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr17_+_25366550_25366550	0.244223	Gli3_Zic1	ENSMUST00000069616.7|Tpsb2|ENSMUSG00000033825.9|tryptase beta 2
mm10_v2_chr12_+_109540979_109541007	0.243462	Gli3_Zic1	ENSMUST00000129245.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000143836.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000124106.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr9_-_114026711_114026764	0.242731	Gli3_Zic1	ENSMUST00000117537.1|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2 	ENSMUST00000035090.7|Fbxl2|ENSMUSG00000032507.9|F-box and leucine-rich repeat protein 2
mm10_v2_chr1_-_135167606_135167681	0.241819	Gli3_Zic1	ENSMUST00000027682.8|Gpr37l1|ENSMUSG00000026424.8|G protein-coupled receptor 37-like 1
mm10_v2_chr10_+_19951055_19951055	0.238812	Gli3_Zic1	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chrX_+_152144240_152144272	0.238335	Gli3_Zic1	ENSMUST00000168786.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112605.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2 	ENSMUST00000112604.1|Iqsec2|ENSMUSG00000041115.10|IQ motif and Sec7 domain 2
mm10_v2_chr19_+_6384395_6384422	0.23553	Gli3_Zic1	ENSMUST00000035269.8|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase 	ENSMUST00000113483.1|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase
mm10_v2_chr7_-_126704816_126704854	0.232143	Gli3_Zic1	ENSMUST00000032949.7|Coro1a|ENSMUSG00000030707.9|coronin, actin binding protein 1A
mm10_v2_chr15_-_100669496_100669511	0.22907	Gli3_Zic1	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr5_-_32746272_32746313	0.228056	Gli3_Zic1	ENSMUST00000120591.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr15_+_59315030_59315087	0.22736	Gli3_Zic1	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr15_+_75969287_75969312	0.227075	Gli3_Zic1	ENSMUST00000147641.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr12_+_32378692_32378789	0.2252	Gli3_Zic1	ENSMUST00000172332.2|Ccdc71l|ENSMUSG00000090946.2|coiled-coil domain containing 71 like
mm10_v2_chr7_+_65693417_65693446	0.222105	Gli3_Zic1	ENSMUST00000032726.7|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3 	ENSMUST00000107495.3|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chr11_+_60353324_60353408	0.217339	Gli3_Zic1	ENSMUST00000070805.6|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000094140.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108723.2|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48 	ENSMUST00000108722.4|Lrrc48|ENSMUSG00000056598.10|leucine rich repeat containing 48
mm10_v2_chr7_-_80401707_80401754	0.217305	Gli3_Zic1	ENSMUST00000120753.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr2_-_125723387_125723537	0.215658	Gli3_Zic1	ENSMUST00000042246.7|Shc4|ENSMUSG00000035109.8|SHC (Src homology 2 domain containing) family, member 4
mm10_v2_chr17_+_35220834_35220834	0.215339	Gli3_Zic1	ENSMUST00000118793.1|Gm16181|ENSMUSG00000081650.1|predicted gene 16181
mm10_v2_chr4_+_123233556_123233556	0.211827	Gli3_Zic1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chr2_+_181520533_181520563	0.211729	Gli3_Zic1	ENSMUST00000108797.1|Dnajc5|ENSMUSG00000000826.10|DnaJ (Hsp40) homolog, subfamily C, member 5
mm10_v2_chr12_+_32953874_32953891	0.210328	Gli3_Zic1	ENSMUST00000076698.5|Sypl|ENSMUSG00000020570.8|synaptophysin-like protein
mm10_v2_chr11_+_72796254_72796268	0.20533	Gli3_Zic1	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr17_-_56874421_56874460	0.203347	Gli3_Zic1	ENSMUST00000043062.4|Acsbg2|ENSMUSG00000024207.8|acyl-CoA synthetase bubblegum family member 2
mm10_v2_chr12_-_70227622_70227683	0.201479	Gli3_Zic1	ENSMUST00000071250.6|Pygl|ENSMUSG00000021069.10|liver glycogen phosphorylase
mm10_v2_chr7_+_65693447_65693477	0.20139	Gli3_Zic1	ENSMUST00000143508.1|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chr8_-_107096510_107096562	0.200152	Gli3_Zic1	ENSMUST00000068388.8|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000133925.1|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000068421.6|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000116425.2|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2
mm10_v2_chr5_+_5573952_5574013	0.198284	Gli3_Zic1	ENSMUST00000101627.2|Gm8773|ENSMUSG00000073234.2|predicted gene 8773
mm10_v2_chr1_+_131827977_131828019	0.198233	Gli3_Zic1	ENSMUST00000086559.6|Slc41a1|ENSMUSG00000013275.9|solute carrier family 41, member 1
mm10_v2_chr19_+_5038826_5038938	0.194691	Gli3_Zic1	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr2_-_39190687_39190746	0.194311	Gli3_Zic1	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr6_-_101377342_101377388	0.193173	Gli3_Zic1	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr17_+_35135196_35135243	0.192903	Gli3_Zic1	ENSMUST00000172571.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173491.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chrM_+_7005_7022	0.1926	Gli3_Zic1	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr6_+_48395652_48395688	0.192228	Gli3_Zic1	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr6_+_91684061_91684132	0.189144	Gli3_Zic1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr1_+_153900572_153900606	0.186262	Gli3_Zic1	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr9_+_77917364_77917386	0.183898	Gli3_Zic1	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr15_+_75969123_75969189	0.179638	Gli3_Zic1	ENSMUST00000109966.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707 	ENSMUST00000109967.3|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr5_+_135887905_135887923	0.175462	Gli3_Zic1	ENSMUST00000005077.6|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr11_+_4135167_4135222	0.174412	Gli3_Zic1	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr17_-_56609689_56609771	0.17067	Gli3_Zic1	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chr13_+_109685994_109686156	0.166163	Gli3_Zic1	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr19_+_55316313_55316367	0.161447	Gli3_Zic1	ENSMUST00000095950.2|Vti1a|ENSMUSG00000024983.9|vesicle transport through interaction with t-SNAREs 1A
mm10_v2_chr1_+_64690443_64690467	0.161438	Gli3_Zic1	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr11_-_40755201_40755311	0.158038	Gli3_Zic1	ENSMUST00000020576.7|Ccng1|ENSMUSG00000020326.7|cyclin G1
mm10_v2_chr8_-_34965631_34965714	0.15582	Gli3_Zic1	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr12_+_3365108_3365142	0.152723	Gli3_Zic1	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr17_+_35135174_35135181	0.150785	Gli3_Zic1	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr3_-_95357156_95357211	0.148477	Gli3_Zic1	ENSMUST00000107171.3|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000015841.5|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000107170.2|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1
mm10_v2_chr17_+_34187545_34187571	0.139896	Gli3_Zic1	ENSMUST00000170086.1|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr1_-_93801840_93801945	0.139317	Gli3_Zic1	ENSMUST00000112890.2|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase 	ENSMUST00000027503.7|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase
mm10_v2_chr19_-_41263931_41264008	0.133386	Gli3_Zic1	ENSMUST00000025989.8|Tm9sf3|ENSMUSG00000025016.10|transmembrane 9 superfamily member 3
mm10_v2_chr9_-_108190352_108190420	0.131677	Gli3_Zic1	ENSMUST00000035208.7|Bsn|ENSMUSG00000032589.8|bassoon
mm10_v2_chr11_+_115154139_115154194	0.130118	Gli3_Zic1	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr9_-_110117303_110117353	0.129735	Gli3_Zic1	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr17_+_27655572_27655622	0.129189	Gli3_Zic1	ENSMUST00000045896.3|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr17_+_34187789_34187828	0.129075	Gli3_Zic1	ENSMUST00000041633.8|Tap1|ENSMUSG00000037321.11|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm10_v2_chr1_+_36511867_36511903	0.127539	Gli3_Zic1	ENSMUST00000001166.7|Cnnm3|ENSMUSG00000001138.7|cyclin M3 	ENSMUST00000097776.3|Cnnm3|ENSMUSG00000001138.7|cyclin M3
mm10_v2_chr10_+_40629987_40630053	0.126829	Gli3_Zic1	ENSMUST00000019977.7|Ddo|ENSMUSG00000063428.7|D-aspartate oxidase
mm10_v2_chr5_+_67306941_67306977	0.125847	Gli3_Zic1	ENSMUST00000162372.1|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9 	ENSMUST00000113676.2|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9
mm10_v2_chr5_-_32746317_32746411	0.124969	Gli3_Zic1	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr13_+_54071815_54071859	0.122373	Gli3_Zic1	ENSMUST00000021930.8|Sfxn1|ENSMUSG00000021474.8|sideroflexin 1
mm10_v2_chr17_-_23599487_23599547	0.121627	Gli3_Zic1	ENSMUST00000057029.4|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr16_-_91011308_91011431	0.120403	Gli3_Zic1	ENSMUST00000121759.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr7_+_125603420_125603437	0.120371	Gli3_Zic1	ENSMUST00000033000.6|Il21r|ENSMUSG00000030745.8|interleukin 21 receptor
mm10_v2_chrX_+_101383726_101383741	0.119648	Gli3_Zic1	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr15_-_100584075_100584075	0.118528	Gli3_Zic1	ENSMUST00000184908.1|POU6F1|ENSMUSG00000098598.1|POU domain, class 6, transcription factor 1 (Pou6f1), mRNA
mm10_v2_chr3_+_79885930_79886002	0.115611	Gli3_Zic1	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr4_-_137766474_137766501	0.114566	Gli3_Zic1	ENSMUST00000139951.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr13_-_14613017_14613056	0.112624	Gli3_Zic1	ENSMUST00000015816.3|Mrpl32|ENSMUSG00000015672.3|mitochondrial ribosomal protein L32
mm10_v2_chr1_+_43445736_43445830	0.11153	Gli3_Zic1	ENSMUST00000086421.5|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2 	ENSMUST00000114744.1|Nck2|ENSMUSG00000066877.5|non-catalytic region of tyrosine kinase adaptor protein 2
mm10_v2_chr15_-_97844254_97844318	0.11085	Gli3_Zic1	ENSMUST00000119670.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000116409.2|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr3_+_28263205_28263215	0.109566	Gli3_Zic1	ENSMUST00000159236.2|Tnik|ENSMUSG00000027692.10|TRAF2 and NCK interacting kinase
mm10_v2_chr4_+_48585276_48585365	0.107891	Gli3_Zic1	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr6_-_115251839_115251867	0.104228	Gli3_Zic1	ENSMUST00000032462.6|Timp4|ENSMUSG00000030317.6|tissue inhibitor of metalloproteinase 4
mm10_v2_chr7_+_3390629_3390707	0.10412	Gli3_Zic1	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr15_-_97844164_97844245	0.103766	Gli3_Zic1	ENSMUST00000120683.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr17_+_15041641_15041641	0.102036	Gli3_Zic1	ENSMUST00000097393.3|Ermard|ENSMUSG00000036552.10|ER membrane associated RNA degradation
mm10_v2_chr11_-_118248507_118248571	0.102017	Gli3_Zic1	ENSMUST00000017276.7|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr15_+_78428650_78428671	0.101119	Gli3_Zic1	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr5_-_117319242_117319242	0.0998641	Gli3_Zic1	ENSMUST00000100834.1|Gm10399|ENSMUSG00000072688.1|predicted gene 10399
mm10_v2_chr7_-_114636299_114636357	0.0994526	Gli3_Zic1	ENSMUST00000032906.4|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha 	ENSMUST00000032907.7|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha
mm10_v2_chr6_+_48395586_48395646	0.099318	Gli3_Zic1	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr8_-_85080679_85080746	0.0947682	Gli3_Zic1	ENSMUST00000093357.5|Wdr83|ENSMUSG00000005150.10|WD repeat domain containing 83
mm10_v2_chr5_+_135887988_135888018	0.0925405	Gli3_Zic1	ENSMUST00000111155.1|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr11_+_51619731_51619813	0.0915683	Gli3_Zic1	ENSMUST00000127405.1|Nhp2|ENSMUSG00000001056.3|NHP2 ribonucleoprotein
mm10_v2_chrX_+_163908982_163909017	0.0901546	Gli3_Zic1	ENSMUST00000069041.8|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr11_+_77763246_77763339	0.0900468	Gli3_Zic1	ENSMUST00000108375.2|Myo18a|ENSMUSG00000000631.13|myosin XVIIIA
mm10_v2_chr15_-_56694525_56694554	0.0898723	Gli3_Zic1	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr4_-_126202757_126202762	0.0882264	Gli3_Zic1	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr7_-_126704736_126704762	0.0870803	Gli3_Zic1	ENSMUST00000131415.1|Coro1a|ENSMUSG00000030707.9|coronin, actin binding protein 1A
mm10_v2_chr16_+_20673264_20673420	0.0866565	Gli3_Zic1	ENSMUST00000154950.1|Eif4g1|ENSMUSG00000045983.9|eukaryotic translation initiation factor 4, gamma 1 	ENSMUST00000115461.1|Eif4g1|ENSMUSG00000045983.9|eukaryotic translation initiation factor 4, gamma 1
mm10_v2_chr8_+_3493135_3493212	0.0863571	Gli3_Zic1	ENSMUST00000061508.7|Zfp358|ENSMUSG00000047264.7|zinc finger protein 358
mm10_v2_chr17_+_15010266_15010266	0.0857304	Gli3_Zic1	ENSMUST00000097395.3|Gm3435|ENSMUSG00000079709.2|predicted gene 3435
mm10_v2_chr15_+_78428564_78428636	0.0848018	Gli3_Zic1	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr10_+_127041931_127041972	0.0838919	Gli3_Zic1	ENSMUST00000006915.7|Mettl1|ENSMUSG00000006732.8|methyltransferase like 1 	ENSMUST00000120542.1|Mettl1|ENSMUSG00000006732.8|methyltransferase like 1
mm10_v2_chr8_+_123411424_123411562	0.0820114	Gli3_Zic1	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr15_-_100669535_100669560	0.0818176	Gli3_Zic1	ENSMUST00000183211.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_+_116030304_116030385	0.0776109	Gli3_Zic1	ENSMUST00000021116.5|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila) 	ENSMUST00000106452.1|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila)
mm10_v2_chrX_+_159697308_159697331	0.0758317	Gli3_Zic1	ENSMUST00000123433.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr11_-_30268169_30268191	0.0757499	Gli3_Zic1	ENSMUST00000006629.7|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr1_-_64121456_64121491	0.0753055	Gli3_Zic1	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr3_-_116007399_116007411	0.0706947	Gli3_Zic1	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr5_+_115279666_115279716	0.0679358	Gli3_Zic1	ENSMUST00000040421.4|Coq5|ENSMUSG00000041733.4|coenzyme Q5 homolog, methyltransferase (yeast)
mm10_v2_chr4_+_48585135_48585187	0.0671229	Gli3_Zic1	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr4_-_40948196_40948296	0.0671208	Gli3_Zic1	ENSMUST00000030125.4|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1 	ENSMUST00000108089.1|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1
mm10_v2_chr16_-_91011093_91011113	0.0653159	Gli3_Zic1	ENSMUST00000170853.1|Synj1|ENSMUSG00000022973.11|synaptojanin 1 	ENSMUST00000118390.2|Synj1|ENSMUSG00000022973.11|synaptojanin 1
mm10_v2_chr3_-_104511812_104511933	0.0623316	Gli3_Zic1	ENSMUST00000046316.6|Lrig2|ENSMUSG00000032913.9|leucine-rich repeats and immunoglobulin-like domains 2
mm10_v2_chr9_-_44881274_44881323	0.0591397	Gli3_Zic1	ENSMUST00000002095.3|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000114689.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A 	ENSMUST00000128768.1|Kmt2a|ENSMUSG00000002028.6|lysine (K)-specific methyltransferase 2A
mm10_v2_chr16_+_64851991_64851996	0.0579706	Gli3_Zic1	ENSMUST00000067744.7|Cggbp1|ENSMUSG00000054604.7|CGG triplet repeat binding protein 1
mm10_v2_chr11_-_102556122_102556199	0.0556804	Gli3_Zic1	ENSMUST00000143842.1|Gpatch8|ENSMUSG00000034621.8|G patch domain containing 8
mm10_v2_chr5_-_146963742_146963805	0.0537959	Gli3_Zic1	ENSMUST00000125217.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110564.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000066675.3|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000016654.2|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000110566.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3 	ENSMUST00000140526.1|Mtif3|ENSMUSG00000016510.5|mitochondrial translational initiation factor 3
mm10_v2_chr3_+_106547693_106547888	0.0496582	Gli3_Zic1	ENSMUST00000117469.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000067630.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000134396.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000144746.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000121034.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000029507.6|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000132923.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2 	ENSMUST00000151465.1|Dram2|ENSMUSG00000027900.9|DNA-damage regulated autophagy modulator 2
mm10_v2_chr2_+_181497165_181497216	0.0481779	Gli3_Zic1	ENSMUST00000149163.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000000844.8|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000184849.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000108800.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000069712.2|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr13_+_34162953_34163033	0.0479266	Gli3_Zic1	ENSMUST00000124996.1|Psmg4|ENSMUSG00000071451.3|proteasome (prosome, macropain) assembly chaperone 4 	ENSMUST00000147632.1|Psmg4|ENSMUSG00000071451.3|proteasome (prosome, macropain) assembly chaperone 4
mm10_v2_chr2_-_119477613_119477705	0.0474416	Gli3_Zic1	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr7_+_66689889_66689980	0.0469627	Gli3_Zic1	ENSMUST00000153007.1|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000177726.1|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000121777.2|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000150071.1|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila) 	ENSMUST00000077967.6|Lins|ENSMUSG00000053091.10|lines homolog (Drosophila)
mm10_v2_chr8_-_13890233_13890300	0.0469531	Gli3_Zic1	ENSMUST00000033839.7|Coprs|ENSMUSG00000031458.7|coordinator of PRMT5, differentiation stimulator
mm10_v2_chr5_-_122264378_122264460	0.0456133	Gli3_Zic1	ENSMUST00000111738.3|Tctn1|ENSMUSG00000038593.12|tectonic family member 1
mm10_v2_chr8_+_18595131_18595186	0.0447467	Gli3_Zic1	ENSMUST00000039412.8|Mcph1|ENSMUSG00000039842.9|microcephaly, primary autosomal recessive 1
mm10_v2_chr11_+_50237002_50237014	0.044444	Gli3_Zic1	ENSMUST00000180443.1|Gm26542|ENSMUSG00000097887.1|predicted gene, 26542
mm10_v2_chr5_-_137786681_137786715	0.0418124	Gli3_Zic1	ENSMUST00000132726.1|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr5_-_75044562_75044774	0.0411558	Gli3_Zic1	ENSMUST00000075452.5|Chic2|ENSMUSG00000029229.7|cysteine-rich hydrophobic domain 2
mm10_v2_chr13_-_63431683_63431733	0.0403542	Gli3_Zic1	ENSMUST00000160931.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000099444.3|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000161977.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000163091.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr16_-_32247152_32247179	0.0370718	Gli3_Zic1	ENSMUST00000042732.5|Fbxo45|ENSMUSG00000035764.5|F-box protein 45
mm10_v2_chr3_+_88142328_88142483	0.0344247	Gli3_Zic1	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr14_-_62761112_62761145	0.0334296	Gli3_Zic1	ENSMUST00000053959.6|Ints6|ENSMUSG00000035161.6|integrator complex subunit 6
mm10_v2_chr6_+_125009665_125009805	0.0333771	Gli3_Zic1	ENSMUST00000046064.10|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000152752.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000088308.3|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000112425.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000084275.5|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr2_+_181187247_181187347	0.0329108	Gli3_Zic1	ENSMUST00000016488.6|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene 	ENSMUST00000108841.1|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
mm10_v2_chr7_+_24370255_24370312	0.0323092	Gli3_Zic1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr5_-_5266038_5266292	0.0284518	Gli3_Zic1	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr8_-_95434869_95434901	0.0257198	Gli3_Zic1	ENSMUST00000034249.6|Gtl3|ENSMUSG00000031796.6|gene trap locus 3
mm10_v2_chr11_-_118248590_118248607	0.025532	Gli3_Zic1	ENSMUST00000106305.2|Cyth1|ENSMUSG00000017132.11|cytohesin 1
mm10_v2_chr1_-_52232296_52232432	0.0221272	Gli3_Zic1	ENSMUST00000114512.1|Gls|ENSMUSG00000026103.8|glutaminase
mm10_v2_chr8_+_124897877_124897901	0.0219798	Gli3_Zic1	ENSMUST00000034467.5|Sprtn|ENSMUSG00000031986.5|SprT-like N-terminal domain
mm10_v2_chr17_+_56326045_56326097	0.0203938	Gli3_Zic1	ENSMUST00000139679.1|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000025036.4|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B 	ENSMUST00000086835.5|Kdm4b|ENSMUSG00000024201.6|lysine (K)-specific demethylase 4B
mm10_v2_chr13_-_67526136_67526179	0.0181434	Gli3_Zic1	ENSMUST00000181341.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87 	ENSMUST00000181767.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87 	ENSMUST00000181573.1|Zfp87|ENSMUSG00000097333.1|zinc finger protein 87
mm10_v2_chr8_+_105170668_105170686	0.0168838	Gli3_Zic1	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr16_-_85803106_85803121	0.0164245	Gli3_Zic1	ENSMUST00000023610.8|Adamts1|ENSMUSG00000022893.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm10_v2_chr1_-_65051119_65051150	0.0152152	Gli3_Zic1	ENSMUST00000161960.1|Cryge|ENSMUSG00000070870.6|crystallin, gamma E 	ENSMUST00000087359.5|Cryge|ENSMUSG00000070870.6|crystallin, gamma E
mm10_v2_chr1_+_63730614_63730657	0.0150743	Gli3_Zic1	ENSMUST00000027103.6|Fastkd2|ENSMUSG00000025962.9|FAST kinase domains 2
mm10_v2_chr8_-_124897685_124897757	0.0149538	Gli3_Zic1	ENSMUST00000098312.2|Exoc8|ENSMUSG00000074030.2|exocyst complex component 8
mm10_v2_chr9_+_45906513_45906569	0.0139223	Gli3_Zic1	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr11_-_61494173_61494296	0.0118074	Gli3_Zic1	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr10_-_120979327_120979373	0.0112766	Gli3_Zic1	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr4_+_141213948_141213998	0.0100228	Gli3_Zic1	ENSMUST00000097813.2|Rsg1|ENSMUSG00000073733.4|REM2 and RAB-like small GTPase 1
mm10_v2_chr2_-_156839790_156839892	0.00830643	Gli3_Zic1	ENSMUST00000134838.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000137463.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000149275.2|Gm14230|ENSMUSG00000087179.2|predicted gene 14230
mm10_v2_chr17_+_27655643_27655659	0.00753493	Gli3_Zic1	ENSMUST00000114872.1|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr4_-_126202583_126202698	0.00690483	Gli3_Zic1	ENSMUST00000106142.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000169403.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000130334.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr5_+_117319258_117319284	0.00653793	Gli3_Zic1	ENSMUST00000111967.1|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr3_-_106547564_106547592	0.00544929	Gli3_Zic1	ENSMUST00000121231.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1 	ENSMUST00000141525.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1
mm10_v2_chr4_-_148130678_148130706	0.0050106	Gli3_Zic1	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr17_+_35135695_35135781	0.00434392	Gli3_Zic1	ENSMUST00000174478.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000174281.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173550.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr11_+_85311232_85311286	0.00426205	Gli3_Zic1	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr9_-_108578657_108578675	0.00320723	Gli3_Zic1	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr5_+_24425232_24425291	0.00241221	Gli3_Zic1	ENSMUST00000080067.6|Slc4a2|ENSMUSG00000028962.8|solute carrier family 4 (anion exchanger), member 2
mm10_v2_chr2_+_106693185_106693278	0.000949367	Gli3_Zic1	ENSMUST00000111063.1|Mpped2|ENSMUSG00000016386.9|metallophosphoesterase domain containing 2
mm10_v2_chr10_+_128706251_128706264	4.63225e-05	Gli3_Zic1	ENSMUST00000054125.8|Pmel|ENSMUSG00000025359.9|premelanosome protein
