mm10_v2_chr16_+_42907563_42907684	12.333	Hoxa6	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr7_-_37773555_37773641	9.86339	Hoxa6	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr1_+_19103022_19103043	8.27346	Hoxa6	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr1_-_165934900_165935036	8.07697	Hoxa6	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr1_-_163313661_163313710	6.72831	Hoxa6	ENSMUST00000174397.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000075805.6|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000027878.7|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr14_-_118052235_118052253	6.58676	Hoxa6	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr7_-_116038734_116038750	6.46978	Hoxa6	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr2_-_18048784_18048822	6.46041	Hoxa6	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr2_+_38341068_38341092	6.26386	Hoxa6	ENSMUST00000133661.1|Lhx2|ENSMUSG00000000247.5|LIM homeobox protein 2
mm10_v2_chr9_+_118478182_118478212	6.21035	Hoxa6	ENSMUST00000111763.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr9_+_118478344_118478451	6.03914	Hoxa6	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr18_-_84086379_84086404	5.83921	Hoxa6	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr13_-_103764502_103764505	5.69017	Hoxa6	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr13_-_97747373_97747384	5.63437	Hoxa6	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr1_+_6730051_6730117	5.35348	Hoxa6	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr6_+_15185456_15185563	5.23943	Hoxa6	ENSMUST00000115472.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115474.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000031545.7|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000137628.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr2_+_70474923_70474923	4.92249	Hoxa6	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr4_-_110292719_110292732	4.90648	Hoxa6	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr2_-_33942111_33942151	4.82821	Hoxa6	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr12_-_34528844_34528904	4.73397	Hoxa6	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr2_+_181767040_181767073	4.3309	Hoxa6	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr13_-_97747399_97747414	4.15466	Hoxa6	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr9_-_42399709_42399727	4.11215	Hoxa6	ENSMUST00000160940.1|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr9_-_42399915_42399929	4.07706	Hoxa6	ENSMUST00000042190.7|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr7_-_37772868_37772891	3.97477	Hoxa6	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr14_-_48665098_48665246	3.90589	Hoxa6	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr6_+_15196949_15197102	3.84133	Hoxa6	ENSMUST00000151301.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000131414.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000140557.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115469.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr14_+_28511344_28511405	3.82942	Hoxa6	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chr19_+_55894508_55894534	3.75693	Hoxa6	ENSMUST00000142291.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr16_+_43247278_43247309	3.60152	Hoxa6	ENSMUST00000114691.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000079441.6|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr5_-_106574706_106574727	3.53994	Hoxa6	ENSMUST00000131029.1|RP24-421H18.1|ENSMUSG00000099061.1|RP24-421H18.1	ENSMUST00000124394.2|RP24-421H18.1|ENSMUSG00000099061.1|RP24-421H18.1
mm10_v2_chr16_+_43503607_43503642	3.52787	Hoxa6	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_-_166002613_166002678	3.48453	Hoxa6	ENSMUST00000177358.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160908.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000027850.8|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160260.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr2_-_79456750_79456761	3.42899	Hoxa6	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr9_+_120929216_120929251	3.39345	Hoxa6	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr11_+_102604370_102604435	3.22467	Hoxa6	ENSMUST00000057893.5|Fzd2|ENSMUSG00000050288.5|frizzled homolog 2 (Drosophila)
mm10_v2_chr4_+_11579647_11579674	3.17642	Hoxa6	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr1_-_166002591_166002609	3.06086	Hoxa6	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr2_+_181767283_181767322	3.03749	Hoxa6	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr5_+_149678224_149678241	2.99942	Hoxa6	ENSMUST00000100404.3|B3galtl|ENSMUSG00000051950.8|beta 1,3-galactosyltransferase-like
mm10_v2_chr10_-_92164666_92164754	2.99157	Hoxa6	ENSMUST00000183123.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000182033.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr7_-_109170308_109170308	2.97175	Hoxa6	ENSMUST00000036992.7|Lmo1|ENSMUSG00000036111.7|LIM domain only 1
mm10_v2_chr11_-_19018956_19018973	2.87885	Hoxa6	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr2_-_116067391_116067444	2.85854	Hoxa6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr17_+_75178797_75178824	2.85009	Hoxa6	ENSMUST00000112516.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1 	ENSMUST00000135447.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr2_-_18048347_18048449	2.84775	Hoxa6	ENSMUST00000066885.5|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr4_-_110287479_110287534	2.76077	Hoxa6	ENSMUST00000106598.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000102723.4|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000153906.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr7_-_115824699_115824752	2.75196	Hoxa6	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr10_-_42583628_42583639	2.70324	Hoxa6	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr17_+_75178911_75178961	2.61393	Hoxa6	ENSMUST00000112514.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr17_-_51810866_51810919	2.56084	Hoxa6	ENSMUST00000176669.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr3_+_102010138_102010171	2.49213	Hoxa6	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr6_+_80018877_80018945	2.46308	Hoxa6	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr11_-_19018714_19018828	2.45787	Hoxa6	ENSMUST00000177417.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr3_-_52104891_52104922	2.42312	Hoxa6	ENSMUST00000121440.1|Maml3|ENSMUSG00000061143.9|mastermind like 3 (Drosophila)
mm10_v2_chr2_+_71528657_71528683	2.40054	Hoxa6	ENSMUST00000126400.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
mm10_v2_chr2_-_170194033_170194064	2.36543	Hoxa6	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr6_+_80019008_80019048	2.35701	Hoxa6	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr16_+_43235856_43235880	2.351	Hoxa6	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr1_+_104768510_104768529	2.3221	Hoxa6	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr5_-_123141067_123141094	2.32141	Hoxa6	ENSMUST00000162697.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000160321.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000159637.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr6_+_34598530_34598587	2.31143	Hoxa6	ENSMUST00000115027.1|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000115026.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr1_+_6734827_6734874	2.19114	Hoxa6	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr7_-_73541738_73541758	2.13868	Hoxa6	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr6_+_34709442_34709497	2.1132	Hoxa6	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr6_+_34598500_34598529	2.08361	Hoxa6	ENSMUST00000079391.3|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000142512.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr4_-_42168603_42168603	2.01081	Hoxa6	ENSMUST00000098121.3|Gm13305|ENSMUSG00000073876.3|predicted gene 13305
mm10_v2_chr16_+_43363855_43363888	2.00079	Hoxa6	ENSMUST00000156367.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr18_-_13972617_13972733	1.95578	Hoxa6	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr4_-_91399984_91400007	1.92146	Hoxa6	ENSMUST00000102799.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr4_-_97584612_97584643	1.91659	Hoxa6	ENSMUST00000107068.2|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr2_+_116067933_116067975	1.87995	Hoxa6	ENSMUST00000156095.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr4_-_97584605_97584610	1.8716	Hoxa6	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr19_+_55895508_55895511	1.79116	Hoxa6	ENSMUST00000111646.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr6_+_34709610_34709635	1.74873	Hoxa6	ENSMUST00000031775.6|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr13_-_83729544_83729584	1.73538	Hoxa6	ENSMUST00000181705.1|Gm26803|ENSMUSG00000097265.1|predicted gene, 26803
mm10_v2_chr2_-_63184253_63184292	1.72155	Hoxa6	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr5_+_13398688_13398726	1.7024	Hoxa6	ENSMUST00000125629.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr12_+_38783455_38783482	1.69326	Hoxa6	ENSMUST00000161980.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160701.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr5_+_13399309_13399382	1.6211	Hoxa6	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr18_-_54990124_54990180	1.58839	Hoxa6	ENSMUST00000064763.5|Zfp608|ENSMUSG00000052713.8|zinc finger protein 608
mm10_v2_chr11_+_77930800_77931012	1.55877	Hoxa6	ENSMUST00000093995.3|Sez6|ENSMUSG00000000632.7|seizure related gene 6 	ENSMUST00000000646.7|Sez6|ENSMUSG00000000632.7|seizure related gene 6
mm10_v2_chr15_+_18818895_18818947	1.55116	Hoxa6	ENSMUST00000166873.2|Cdh10|ENSMUSG00000022321.9|cadherin 10
mm10_v2_chr10_+_88091070_88091076	1.52602	Hoxa6	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr12_+_38783503_38783527	1.50323	Hoxa6	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chrM_+_7005_7022	1.48702	Hoxa6	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr14_-_48662740_48662872	1.46229	Hoxa6	ENSMUST00000122009.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr11_+_116657106_116657117	1.45959	Hoxa6	ENSMUST00000116318.2|Gm11744|ENSMUSG00000075410.6|predicted gene 11744
mm10_v2_chr12_-_54986363_54986529	1.45714	Hoxa6	ENSMUST00000173433.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A 	ENSMUST00000173803.1|Gm20403|ENSMUSG00000092233.1|predicted gene 20403
mm10_v2_chr12_-_54986328_54986342	1.41735	Hoxa6	ENSMUST00000038926.6|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr1_-_87394721_87394734	1.41324	Hoxa6	ENSMUST00000113212.3|Kcnj13|ENSMUSG00000079436.3|potassium inwardly-rectifying channel, subfamily J, member 13
mm10_v2_chr2_+_79707780_79707927	1.39888	Hoxa6	ENSMUST00000090760.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000040863.4|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000111780.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm10_v2_chr2_+_20737306_20737321	1.39725	Hoxa6	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr2_-_28916412_28916440	1.3904	Hoxa6	ENSMUST00000050776.2|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila) 	ENSMUST00000113849.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr16_+_43364145_43364204	1.37505	Hoxa6	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr19_-_53371766_53371766	1.36284	Hoxa6	ENSMUST00000086887.1|Gm10197|ENSMUSG00000067085.1|predicted gene 10197
mm10_v2_chr1_+_6730135_6730176	1.34425	Hoxa6	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr8_-_67974567_67974596	1.33027	Hoxa6	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr16_-_64786321_64786321	1.28209	Hoxa6	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr13_+_80883403_80883422	1.27778	Hoxa6	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr3_+_76075583_76075583	1.26733	Hoxa6	ENSMUST00000160261.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr18_-_23041641_23041671	1.22097	Hoxa6	ENSMUST00000097651.3|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr7_-_84679346_84679401	1.21779	Hoxa6	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr17_+_43952999_43953063	1.20839	Hoxa6	ENSMUST00000177857.1|Rcan2|ENSMUSG00000039601.9|regulator of calcineurin 2
mm10_v2_chr13_+_44840686_44840697	1.18824	Hoxa6	ENSMUST00000173906.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr14_-_48667508_48667644	1.17114	Hoxa6	ENSMUST00000144465.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000133479.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000119070.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000152018.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr19_-_59170978_59170978	1.13334	Hoxa6	ENSMUST00000172821.2|Vax1|ENSMUSG00000006270.6|ventral anterior homeobox containing gene 1
mm10_v2_chrM_+_10167_10167	1.03031	Hoxa6	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chr3_+_130180882_130180899	0.999572	Hoxa6	ENSMUST00000106353.1|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1 	ENSMUST00000080335.4|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1
mm10_v2_chr18_-_22850738_22850759	0.973433	Hoxa6	ENSMUST00000092015.4|Nol4|ENSMUSG00000041923.9|nucleolar protein 4 	ENSMUST00000069215.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr5_-_123140135_123140289	0.970766	Hoxa6	ENSMUST00000160099.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr2_-_63184170_63184195	0.968731	Hoxa6	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr4_-_82705735_82705754	0.936677	Hoxa6	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr9_-_60141220_60141246	0.904288	Hoxa6	ENSMUST00000034829.5|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chrM_+_8600_8616	0.901361	Hoxa6	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr18_+_69593361_69593450	0.888919	Hoxa6	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr6_+_15185203_15185244	0.882048	Hoxa6	ENSMUST00000154448.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr4_-_82850721_82850814	0.835579	Hoxa6	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr5_+_34989473_34989549	0.814617	Hoxa6	ENSMUST00000114284.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12 	ENSMUST00000114285.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr8_-_67818284_67818320	0.792323	Hoxa6	ENSMUST00000120071.1|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chrM_+_5319_5333	0.779162	Hoxa6	ENSMUST00000082402.1|mt-Co1|ENSMUSG00000064351.1|mitochondrially encoded cytochrome c oxidase I
mm10_v2_chr13_-_78196373_78196440	0.764745	Hoxa6	ENSMUST00000125176.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chrM_+_2743_2761	0.763866	Hoxa6	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr8_-_47352348_47352367	0.75579	Hoxa6	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr5_+_118169712_118169748	0.742524	Hoxa6	ENSMUST00000054836.6|Hrk|ENSMUSG00000046607.6|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm10_v2_chr16_-_95459245_95459384	0.73904	Hoxa6	ENSMUST00000176345.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000121809.2|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000118113.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000122199.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm10_v2_chrM_+_7759_7927	0.732641	Hoxa6	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr7_-_49636847_49636851	0.729959	Hoxa6	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr4_+_128688726_128688795	0.727361	Hoxa6	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr4_-_21685782_21685805	0.705433	Hoxa6	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr4_+_107968332_107968424	0.695918	Hoxa6	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr2_-_168207063_168207142	0.652575	Hoxa6	ENSMUST00000088001.5|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr4_-_82885148_82885148	0.649939	Hoxa6	ENSMUST00000048430.3|Cer1|ENSMUSG00000038192.5|cerberus 1 homolog (Xenopus laevis)
mm10_v2_chr6_-_97459279_97459303	0.636695	Hoxa6	ENSMUST00000113359.1|Frmd4b|ENSMUSG00000030064.10|FERM domain containing 4B
mm10_v2_chr4_-_88033328_88033373	0.632138	Hoxa6	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr10_+_18469958_18469981	0.628144	Hoxa6	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr7_+_131542867_131542867	0.610538	Hoxa6	ENSMUST00000046093.5|Hmx3|ENSMUSG00000040148.5|H6 homeobox 3
mm10_v2_chr16_-_88056176_88056176	0.580802	Hoxa6	ENSMUST00000072256.5|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000023652.8|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000114137.1|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1
mm10_v2_chr5_+_42067960_42067960	0.568433	Hoxa6	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr18_+_42394539_42394575	0.544346	Hoxa6	ENSMUST00000025374.3|Pou4f3|ENSMUSG00000024497.3|POU domain, class 4, transcription factor 3
mm10_v2_chr14_-_46390501_46390550	0.540934	Hoxa6	ENSMUST00000100676.2|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr3_+_41563356_41563392	0.536772	Hoxa6	ENSMUST00000163764.1|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr15_+_79690869_79690905	0.535548	Hoxa6	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr14_-_46390576_46390669	0.534665	Hoxa6	ENSMUST00000074077.5|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr9_-_40346290_40346337	0.527754	Hoxa6	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr9_+_46998931_46998931	0.520552	Hoxa6	ENSMUST00000178065.1|Gm4791|ENSMUSG00000094893.1|predicted gene 4791
mm10_v2_chr13_-_28953690_28953713	0.517308	Hoxa6	ENSMUST00000067230.5|Sox4|ENSMUSG00000076431.4|SRY-box containing gene 4
mm10_v2_chr13_+_63014934_63014934	0.511639	Hoxa6	ENSMUST00000091560.4|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr10_-_13388753_13388774	0.502739	Hoxa6	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr2_-_28916668_28916668	0.49887	Hoxa6	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr2_-_64097994_64098023	0.47649	Hoxa6	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr3_-_138131356_138131381	0.461666	Hoxa6	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr11_-_33203588_33203599	0.448595	Hoxa6	ENSMUST00000037746.6|Tlx3|ENSMUSG00000040610.6|T cell leukemia, homeobox 3
mm10_v2_chr9_-_119825456_119825456	0.445452	Hoxa6	ENSMUST00000070617.7|Scn11a|ENSMUSG00000034115.9|sodium channel, voltage-gated, type XI, alpha
mm10_v2_chr10_+_42860348_42860377	0.431449	Hoxa6	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr5_+_117841839_117841857	0.430344	Hoxa6	ENSMUST00000142742.2|Nos1|ENSMUSG00000029361.12|nitric oxide synthase 1, neuronal
mm10_v2_chr3_-_131344892_131344940	0.43029	Hoxa6	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr2_-_168767136_168767201	0.406778	Hoxa6	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr4_-_92191749_92191749	0.385784	Hoxa6	ENSMUST00000123179.1|Gm12666|ENSMUSG00000066107.6|predicted gene 12666
mm10_v2_chr14_-_122451109_122451121	0.361934	Hoxa6	ENSMUST00000081580.2|Gm5089|ENSMUSG00000064052.2|predicted gene 5089
mm10_v2_chr18_+_54990280_54990315	0.353213	Hoxa6	ENSMUST00000181538.1|Gm4221|ENSMUSG00000096948.1|predicted gene 4221
mm10_v2_chr7_+_49910112_49910146	0.348926	Hoxa6	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr1_-_30863256_30863256	0.330168	Hoxa6	ENSMUST00000088310.3|Phf3|ENSMUSG00000048874.9|PHD finger protein 3
mm10_v2_chr9_-_105521147_105521265	0.327537	Hoxa6	ENSMUST00000176770.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000085133.6|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr11_+_94044331_94044365	0.30868	Hoxa6	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr6_-_124840192_124840275	0.3015	Hoxa6	ENSMUST00000024206.5|Gnb3|ENSMUSG00000023439.5|guanine nucleotide binding protein (G protein), beta 3
mm10_v2_chr12_-_73047179_73047179	0.298784	Hoxa6	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr17_+_34592248_34592329	0.292697	Hoxa6	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr7_-_70366735_70366771	0.280534	Hoxa6	ENSMUST00000089565.5|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
mm10_v2_chr2_-_168206875_168206922	0.268709	Hoxa6	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr2_-_168767029_168767104	0.264593	Hoxa6	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr2_+_26591423_26591435	0.256824	Hoxa6	ENSMUST00000152988.2|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7 	ENSMUST00000149789.1|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7
mm10_v2_chr5_+_115235836_115235836	0.256123	Hoxa6	ENSMUST00000081497.6|Pop5|ENSMUSG00000060152.8|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm10_v2_chr8_-_67818218_67818269	0.249028	Hoxa6	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr13_-_84064772_84064808	0.248396	Hoxa6	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr10_+_42860776_42860810	0.233923	Hoxa6	ENSMUST00000105494.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr2_+_72297895_72297912	0.217929	Hoxa6	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr3_-_37125943_37125969	0.200666	Hoxa6	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr17_-_58991343_58991375	0.187646	Hoxa6	ENSMUST00000025064.7|2610034M16Rik|ENSMUSG00000024227.8|RIKEN cDNA 2610034M16 gene
mm10_v2_chr9_-_32541589_32541602	0.176772	Hoxa6	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr13_-_18382041_18382041	0.163774	Hoxa6	ENSMUST00000139064.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2 	ENSMUST00000175703.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2
mm10_v2_chr10_+_87859062_87859094	0.149722	Hoxa6	ENSMUST00000095360.4|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chrX_-_88115632_88115675	0.128626	Hoxa6	ENSMUST00000113966.1|Il1rapl1|ENSMUSG00000052372.4|interleukin 1 receptor accessory protein-like 1 	ENSMUST00000113964.1|Il1rapl1|ENSMUSG00000052372.4|interleukin 1 receptor accessory protein-like 1
mm10_v2_chr4_-_129378116_129378116	0.128469	Hoxa6	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr10_+_87859255_87859266	0.112787	Hoxa6	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr1_-_132707304_132707326	0.11278	Hoxa6	ENSMUST00000043189.7|Nfasc|ENSMUSG00000026442.8|neurofascin
mm10_v2_chr10_-_13388830_13388970	0.0945471	Hoxa6	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr11_+_94044194_94044238	0.0890712	Hoxa6	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr1_-_12991109_12991177	0.0811973	Hoxa6	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr11_+_94044241_94044273	0.0723415	Hoxa6	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr2_+_132847719_132847743	0.0566724	Hoxa6	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr10_+_42860648_42860676	0.0536014	Hoxa6	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr10_+_127420867_127420916	0.0527559	Hoxa6	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr12_+_21417872_21417911	0.046912	Hoxa6	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr2_-_36104060_36104073	0.021041	Hoxa6	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr10_-_116549101_116549163	0.0178131	Hoxa6	ENSMUST00000164088.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr2_+_120476911_120476976	0.0135387	Hoxa6	ENSMUST00000110716.1|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000028748.6|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000090028.5|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000110719.2|Capn3|ENSMUSG00000079110.5|calpain 3
mm10_v2_chr1_+_177445660_177445821	0.00520325	Hoxa6	ENSMUST00000077225.6|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr2_-_72986716_72986716	0.00406549	Hoxa6	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr15_-_8710734_8710764	0.00194965	Hoxa6	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr10_+_42583787_42583838	0.00128898	Hoxa6	ENSMUST00000105497.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1 	ENSMUST00000144806.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1
