mm10_v2_chrX_+_100625737_100625737	3.49587	Nkx3-1	ENSMUST00000048962.3|Kif4|ENSMUSG00000034311.3|kinesin family member 4
mm10_v2_chr6_+_128362919_128363058	2.43996	Nkx3-1	ENSMUST00000073316.6|Foxm1|ENSMUSG00000001517.8|forkhead box M1
mm10_v2_chr2_-_84775388_84775411	2.37657	Nkx3-1	ENSMUST00000023994.3|Serping1|ENSMUSG00000023224.6|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm10_v2_chr2_-_84775420_84775444	2.29924	Nkx3-1	ENSMUST00000111641.1|Serping1|ENSMUSG00000023224.6|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm10_v2_chr9_+_72438534_72438578	2.0187	Nkx3-1	ENSMUST00000034746.8|Mns1|ENSMUSG00000032221.8|meiosis-specific nuclear structural protein 1
mm10_v2_chr9_+_72438519_72438533	1.99283	Nkx3-1	ENSMUST00000184604.1|Mns1|ENSMUSG00000032221.8|meiosis-specific nuclear structural protein 1
mm10_v2_chr4_+_116708571_116708609	1.66169	Nkx3-1	ENSMUST00000106462.2|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163 	ENSMUST00000138305.1|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163 	ENSMUST00000125671.1|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163 	ENSMUST00000130828.1|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr1_-_133907053_133907172	1.4666	Nkx3-1	ENSMUST00000149380.1|Optc|ENSMUSG00000010311.9|opticin 	ENSMUST00000124051.2|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr9_-_62537036_62537061	1.43193	Nkx3-1	ENSMUST00000048043.5|Coro2b|ENSMUSG00000041729.9|coronin, actin binding protein, 2B
mm10_v2_chrX_+_56454871_56454887	1.41965	Nkx3-1	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr4_-_45530330_45530330	1.38043	Nkx3-1	ENSMUST00000061986.5|Shb|ENSMUSG00000044813.9|src homology 2 domain-containing transforming protein B
mm10_v2_chr9_-_124493793_124493793	1.37238	Nkx3-1	ENSMUST00000178787.1|Gm21836|ENSMUSG00000096734.1|predicted gene, 21836
mm10_v2_chr9_+_78191966_78191999	1.36931	Nkx3-1	ENSMUST00000034903.5|Gsta4|ENSMUSG00000032348.5|glutathione S-transferase, alpha 4
mm10_v2_chr10_-_13324160_13324242	1.29796	Nkx3-1	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr17_+_56304313_56304407	1.28027	Nkx3-1	ENSMUST00000113035.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000113039.2|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000142387.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1
mm10_v2_chrX_+_164269371_164269522	1.26969	Nkx3-1	ENSMUST00000145412.1|Pir|ENSMUSG00000031379.7|pirin 	ENSMUST00000033749.7|Pir|ENSMUSG00000031379.7|pirin
mm10_v2_chr6_-_99632376_99632376	1.25649	Nkx3-1	ENSMUST00000176255.1|Gm20696|ENSMUSG00000030068.3|predicted gene 20696
mm10_v2_chr2_-_93849679_93849836	1.16013	Nkx3-1	ENSMUST00000068513.4|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000041593.8|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional) 	ENSMUST00000130077.1|Accs|ENSMUSG00000040272.8|1-aminocyclopropane-1-carboxylate synthase (non-functional)
mm10_v2_chr1_-_133906973_133907014	1.13002	Nkx3-1	ENSMUST00000126123.1|Optc|ENSMUSG00000010311.9|opticin
mm10_v2_chr4_+_32623985_32624084	1.1094	Nkx3-1	ENSMUST00000108178.1|Casp8ap2|ENSMUSG00000028282.6|caspase 8 associated protein 2
mm10_v2_chr4_+_110397661_110397708	1.10324	Nkx3-1	ENSMUST00000106589.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106587.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106591.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106592.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr18_+_82910863_82910885	1.08706	Nkx3-1	ENSMUST00000171238.1|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr2_+_23069210_23069327	1.08322	Nkx3-1	ENSMUST00000155602.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr5_-_8422582_8422693	1.08107	Nkx3-1	ENSMUST00000168500.1|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae) 	ENSMUST00000002368.9|Dbf4|ENSMUSG00000002297.9|DBF4 homolog (S. cerevisiae)
mm10_v2_chr4_+_110397764_110397808	0.981537	Nkx3-1	ENSMUST00000097920.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000080744.6|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr8_-_123318553_123318579	0.965723	Nkx3-1	ENSMUST00000118395.1|Fanca|ENSMUSG00000032815.9|Fanconi anemia, complementation group A 	ENSMUST00000035495.8|Fanca|ENSMUSG00000032815.9|Fanconi anemia, complementation group A
mm10_v2_chr4_-_140774196_140774236	0.947325	Nkx3-1	ENSMUST00000026381.6|Padi4|ENSMUSG00000025330.6|peptidyl arginine deiminase, type IV
mm10_v2_chr17_-_25727364_25727426	0.918962	Nkx3-1	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr19_+_5406815_5406880	0.888611	Nkx3-1	ENSMUST00000174412.1|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene 	ENSMUST00000153017.2|4930481A15Rik|ENSMUSG00000086938.2|RIKEN cDNA 4930481A15 gene
mm10_v2_chr8_+_114133557_114133597	0.867392	Nkx3-1	ENSMUST00000073521.5|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7 	ENSMUST00000066514.6|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm10_v2_chr7_+_75455534_75455629	0.852046	Nkx3-1	ENSMUST00000147005.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13 	ENSMUST00000166315.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr12_+_76324860_76324898	0.803944	Nkx3-1	ENSMUST00000095610.2|Akap5|ENSMUSG00000021057.9|A kinase (PRKA) anchor protein 5 	ENSMUST00000154078.2|Akap5|ENSMUSG00000021057.9|A kinase (PRKA) anchor protein 5
mm10_v2_chr18_-_6241486_6241550	0.803649	Nkx3-1	ENSMUST00000025083.7|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr19_+_20601958_20601974	0.801152	Nkx3-1	ENSMUST00000087638.3|Aldh1a1|ENSMUSG00000053279.6|aldehyde dehydrogenase family 1, subfamily A1
mm10_v2_chr10_-_12861735_12861735	0.799258	Nkx3-1	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr5_-_69592274_69592308	0.797389	Nkx3-1	ENSMUST00000174233.1|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2 	ENSMUST00000120789.1|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2 	ENSMUST00000166298.1|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr2_-_155582656_155582668	0.753542	Nkx3-1	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr1_-_156034800_156034817	0.748781	Nkx3-1	ENSMUST00000169241.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr13_-_99900645_99900683	0.735421	Nkx3-1	ENSMUST00000022150.6|Cartpt|ENSMUSG00000021647.6|CART prepropeptide
mm10_v2_chr1_-_163289214_163289235	0.731835	Nkx3-1	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr8_-_41041828_41041866	0.729608	Nkx3-1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr10_+_4432467_4432661	0.725004	Nkx3-1	ENSMUST00000095893.4|1700052N19Rik|ENSMUSG00000061759.9|RIKEN cDNA 1700052N19 gene 	ENSMUST00000118544.1|1700052N19Rik|ENSMUSG00000061759.9|RIKEN cDNA 1700052N19 gene 	ENSMUST00000117489.1|1700052N19Rik|ENSMUSG00000061759.9|RIKEN cDNA 1700052N19 gene
mm10_v2_chr9_+_74976096_74976177	0.722152	Nkx3-1	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr10_-_62814539_62814540	0.710373	Nkx3-1	ENSMUST00000173087.1|Tet1|ENSMUSG00000047146.9|tet methylcytosine dioxygenase 1 	ENSMUST00000174121.1|Tet1|ENSMUSG00000047146.9|tet methylcytosine dioxygenase 1
mm10_v2_chr8_+_114133635_114133662	0.702868	Nkx3-1	ENSMUST00000147605.1|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7 	ENSMUST00000134593.1|Nudt7|ENSMUSG00000031767.7|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm10_v2_chr1_-_53297001_53297023	0.699312	Nkx3-1	ENSMUST00000126590.1|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae) 	ENSMUST00000126412.1|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae) 	ENSMUST00000135246.1|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae) 	ENSMUST00000027267.7|Pms1|ENSMUSG00000026098.7|postmeiotic segregation increased 1 (S. cerevisiae)
mm10_v2_chr12_+_76324905_76324932	0.690363	Nkx3-1	ENSMUST00000172992.1|Akap5|ENSMUSG00000021057.9|A kinase (PRKA) anchor protein 5
mm10_v2_chr7_+_123123870_123123901	0.689648	Nkx3-1	ENSMUST00000094053.5|Tnrc6a|ENSMUSG00000052707.7|trinucleotide repeat containing 6a
mm10_v2_chr6_-_108185552_108185587	0.686315	Nkx3-1	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr11_-_80080928_80081001	0.681834	Nkx3-1	ENSMUST00000103233.3|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3 	ENSMUST00000061283.8|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3
mm10_v2_chr9_+_89199319_89199379	0.670074	Nkx3-1	ENSMUST00000138109.1|Mthfs|ENSMUSG00000066442.10|5, 10-methenyltetrahydrofolate synthetase
mm10_v2_chrX_-_100625901_100625954	0.666364	Nkx3-1	ENSMUST00000059099.6|Pdzd11|ENSMUSG00000015668.7|PDZ domain containing 11
mm10_v2_chr13_-_74482943_74482943	0.618451	Nkx3-1	ENSMUST00000074369.6|Zfp825|ENSMUSG00000069208.5|zinc finger protein 825
mm10_v2_chr12_+_52516077_52516077	0.614538	Nkx3-1	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr2_+_23068168_23068241	0.609306	Nkx3-1	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr13_+_80886095_80886201	0.605632	Nkx3-1	ENSMUST00000161441.1|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr5_-_110046486_110046486	0.597272	Nkx3-1	ENSMUST00000167969.1|Gm17655|ENSMUSG00000090963.1|predicted gene, 17655
mm10_v2_chr3_+_30792876_30792876	0.593346	Nkx3-1	ENSMUST00000029256.7|Sec62|ENSMUSG00000027706.7|SEC62 homolog (S. cerevisiae)
mm10_v2_chr17_-_15564322_15564359	0.56839	Nkx3-1	ENSMUST00000147532.1|Prdm9|ENSMUSG00000051977.8|PR domain containing 9
mm10_v2_chr3_-_57575760_57575836	0.559987	Nkx3-1	ENSMUST00000029380.7|Wwtr1|ENSMUSG00000027803.8|WW domain containing transcription regulator 1
mm10_v2_chr2_+_62664279_62664300	0.546989	Nkx3-1	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr12_-_87233556_87233556	0.54275	Nkx3-1	ENSMUST00000021423.7|Noxred1|ENSMUSG00000072919.3|NADP+ dependent oxidoreductase domain containing 1
mm10_v2_chr2_+_84734050_84734107	0.527169	Nkx3-1	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr3_-_57575907_57575912	0.502647	Nkx3-1	ENSMUST00000120977.1|Wwtr1|ENSMUSG00000027803.8|WW domain containing transcription regulator 1
mm10_v2_chr10_+_94514825_94514922	0.490923	Nkx3-1	ENSMUST00000065060.5|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chrX_-_111537947_111537964	0.48021	Nkx3-1	ENSMUST00000132319.1|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6 	ENSMUST00000123951.1|Rps6ka6|ENSMUSG00000025665.10|ribosomal protein S6 kinase polypeptide 6
mm10_v2_chr11_-_17008647_17008702	0.4569	Nkx3-1	ENSMUST00000102881.3|Plek|ENSMUSG00000020120.9|pleckstrin
mm10_v2_chr1_+_66364623_66364663	0.451941	Nkx3-1	ENSMUST00000077355.5|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114012.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr10_-_13324250_13324318	0.447194	Nkx3-1	ENSMUST00000105543.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr14_+_79515618_79515694	0.445728	Nkx3-1	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr5_-_72559599_72559691	0.445064	Nkx3-1	ENSMUST00000074948.4|Nfxl1|ENSMUSG00000072889.3|nuclear transcription factor, X-box binding-like 1 	ENSMUST00000087216.5|Nfxl1|ENSMUSG00000072889.3|nuclear transcription factor, X-box binding-like 1
mm10_v2_chr18_-_6241470_6241482	0.443453	Nkx3-1	ENSMUST00000163210.1|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr7_+_100537052_100537139	0.423589	Nkx3-1	ENSMUST00000054310.3|Coa4|ENSMUSG00000044881.6|cytochrome c oxidase assembly factor 4
mm10_v2_chr14_-_52213379_52213379	0.420741	Nkx3-1	ENSMUST00000140603.1|Chd8|ENSMUSG00000053754.7|chromodomain helicase DNA binding protein 8
mm10_v2_chr5_-_86676346_86676369	0.403711	Nkx3-1	ENSMUST00000038448.6|Tmprss11bnl|ENSMUSG00000035861.6|transmembrane protease, serine 11b N terminal like
mm10_v2_chr5_-_149051300_149051390	0.402765	Nkx3-1	ENSMUST00000110505.1|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr2_+_110597298_110597316	0.386919	Nkx3-1	ENSMUST00000045972.6|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12 	ENSMUST00000111026.2|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm10_v2_chr17_-_21933022_21933022	0.386559	Nkx3-1	ENSMUST00000074295.7|Zfp942|ENSMUSG00000071267.5|zinc finger protein 942
mm10_v2_chr14_+_47663756_47663756	0.373092	Nkx3-1	ENSMUST00000022391.7|Ktn1|ENSMUSG00000021843.10|kinectin 1
mm10_v2_chr1_-_175688353_175688353	0.365621	Nkx3-1	ENSMUST00000104984.1|Chml|ENSMUSG00000078185.1|choroideremia-like
mm10_v2_chr16_+_20611585_20611635	0.356349	Nkx3-1	ENSMUST00000115522.2|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000119224.1|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000079600.4|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000120394.1|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2
mm10_v2_chr16_-_11909398_11909445	0.355295	Nkx3-1	ENSMUST00000127972.1|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1 	ENSMUST00000121750.1|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1 	ENSMUST00000096272.4|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1 	ENSMUST00000073371.6|Cpped1|ENSMUSG00000065979.6|calcineurin-like phosphoesterase domain containing 1
mm10_v2_chr17_-_65772686_65772752	0.331073	Nkx3-1	ENSMUST00000070673.7|Rab31|ENSMUSG00000056515.8|RAB31, member RAS oncogene family
mm10_v2_chr5_-_21785115_21785251	0.328925	Nkx3-1	ENSMUST00000115193.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115192.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115195.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000030771.5|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2
mm10_v2_chr10_+_100488289_100488289	0.327018	Nkx3-1	ENSMUST00000164751.1|Cep290|ENSMUSG00000019971.9|centrosomal protein 290
mm10_v2_chr5_+_8422831_8422906	0.325259	Nkx3-1	ENSMUST00000066921.3|Slc25a40|ENSMUSG00000054099.5|solute carrier family 25, member 40
mm10_v2_chr10_-_62486575_62486604	0.309015	Nkx3-1	ENSMUST00000092473.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr13_+_23571382_23571396	0.300784	Nkx3-1	ENSMUST00000079251.5|Hist1h2bg|ENSMUSG00000058385.6|histone cluster 1, H2bg
mm10_v2_chr4_+_3940747_3940854	0.295582	Nkx3-1	ENSMUST00000119403.1|Chchd7|ENSMUSG00000042198.6|coiled-coil-helix-coiled-coil-helix domain containing 7
mm10_v2_chr7_+_139214661_139214681	0.287519	Nkx3-1	ENSMUST00000135509.1|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr5_+_72914264_72914304	0.282268	Nkx3-1	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chrX_-_101222426_101222563	0.268454	Nkx3-1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr10_-_4432312_4432388	0.255677	Nkx3-1	ENSMUST00000126102.1|Rmnd1|ENSMUSG00000019763.5|required for meiotic nuclear division 1 homolog (S. cerevisiae) 	ENSMUST00000131853.1|Rmnd1|ENSMUSG00000019763.5|required for meiotic nuclear division 1 homolog (S. cerevisiae) 	ENSMUST00000042251.4|Rmnd1|ENSMUSG00000019763.5|required for meiotic nuclear division 1 homolog (S. cerevisiae)
mm10_v2_chrX_+_163911401_163911439	0.255675	Nkx3-1	ENSMUST00000140845.1|Ap1s2|ENSMUSG00000031367.9|adaptor-related protein complex 1, sigma 2 subunit
mm10_v2_chr9_+_108049254_108049339	0.245958	Nkx3-1	ENSMUST00000112295.2|Gmppb|ENSMUSG00000070284.4|GDP-mannose pyrophosphorylase B 	ENSMUST00000047947.7|Gmppb|ENSMUSG00000070284.4|GDP-mannose pyrophosphorylase B
mm10_v2_chr14_-_46831984_46832057	0.244332	Nkx3-1	ENSMUST00000181311.1|Gm10101|ENSMUSG00000061510.3|predicted gene 10101 	ENSMUST00000074862.2|Gm10101|ENSMUSG00000061510.3|predicted gene 10101
mm10_v2_chr5_+_107597760_107597784	0.231638	Nkx3-1	ENSMUST00000112655.1|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2
mm10_v2_chr10_-_4432285_4432302	0.2245	Nkx3-1	ENSMUST00000155172.1|Rmnd1|ENSMUSG00000019763.5|required for meiotic nuclear division 1 homolog (S. cerevisiae)
mm10_v2_chr1_-_75046639_75046639	0.222283	Nkx3-1	ENSMUST00000152855.1|Nhej1|ENSMUSG00000026162.6|nonhomologous end-joining factor 1
mm10_v2_chr7_+_100537192_100537232	0.206059	Nkx3-1	ENSMUST00000120454.1|Coa4|ENSMUSG00000044881.6|cytochrome c oxidase assembly factor 4
mm10_v2_chr9_-_20976762_20976793	0.202925	Nkx3-1	ENSMUST00000054197.5|S1pr2|ENSMUSG00000043895.5|sphingosine-1-phosphate receptor 2
mm10_v2_chr9_-_35570393_35570402	0.195236	Nkx3-1	ENSMUST00000115110.4|Hyls1|ENSMUSG00000050555.9|hydrolethalus syndrome 1
mm10_v2_chr17_-_56982120_56982161	0.191703	Nkx3-1	ENSMUST00000056113.4|Acer1|ENSMUSG00000045019.4|alkaline ceramidase 1
mm10_v2_chr12_+_17266545_17266601	0.182278	Nkx3-1	ENSMUST00000057288.5|Pdia6|ENSMUSG00000020571.6|protein disulfide isomerase associated 6
mm10_v2_chr7_-_63938862_63938933	0.177462	Nkx3-1	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chrX_+_56317608_56317666	0.176063	Nkx3-1	ENSMUST00000151426.1|1600025M17Rik|ENSMUSG00000085114.1|RIKEN cDNA 1600025M17 gene 	ENSMUST00000138262.1|1600025M17Rik|ENSMUSG00000085114.1|RIKEN cDNA 1600025M17 gene
mm10_v2_chr1_+_135133272_135133336	0.174387	Nkx3-1	ENSMUST00000167080.1|Ptpn7|ENSMUSG00000031506.5|protein tyrosine phosphatase, non-receptor type 7
mm10_v2_chr4_+_134397380_134397471	0.169391	Nkx3-1	ENSMUST00000105870.1|Pafah2|ENSMUSG00000037366.8|platelet-activating factor acetylhydrolase 2
mm10_v2_chr4_+_33310306_33310387	0.168282	Nkx3-1	ENSMUST00000108153.2|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase 	ENSMUST00000029942.7|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase
mm10_v2_chr15_-_50882806_50882822	0.159947	Nkx3-1	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr9_-_89092835_89092835	0.158864	Nkx3-1	ENSMUST00000167113.1|Trim43b|ENSMUSG00000079162.2|tripartite motif-containing 43B
mm10_v2_chr2_+_79707780_79707927	0.15154	Nkx3-1	ENSMUST00000090760.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000040863.4|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000111780.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm10_v2_chr7_+_43607169_43607225	0.13044	Nkx3-1	ENSMUST00000120935.1|Zfp819|ENSMUSG00000055102.9|zinc finger protein 819 	ENSMUST00000127765.1|Zfp819|ENSMUSG00000055102.9|zinc finger protein 819 	ENSMUST00000032661.7|Zfp819|ENSMUSG00000055102.9|zinc finger protein 819
mm10_v2_chr17_-_25942821_25942862	0.127411	Nkx3-1	ENSMUST00000148382.1|Pigq|ENSMUSG00000025728.8|phosphatidylinositol glycan anchor biosynthesis, class Q 	ENSMUST00000145745.1|Pigq|ENSMUSG00000025728.8|phosphatidylinositol glycan anchor biosynthesis, class Q
mm10_v2_chr8_-_23237623_23237681	0.12587	Nkx3-1	ENSMUST00000033950.5|Gins4|ENSMUSG00000031546.5|GINS complex subunit 4 (Sld5 homolog)
mm10_v2_chr9_+_78051938_78051958	0.120036	Nkx3-1	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr13_-_41847482_41847490	0.118491	Nkx3-1	ENSMUST00000072012.3|Adtrp|ENSMUSG00000058022.7|androgen dependent TFPI regulating protein
mm10_v2_chr3_+_14863495_14863538	0.108938	Nkx3-1	ENSMUST00000029076.4|Car3|ENSMUSG00000027559.4|carbonic anhydrase 3
mm10_v2_chr11_-_21370452_21370485	0.107817	Nkx3-1	ENSMUST00000102875.4|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr12_-_100899436_100899524	0.106102	Nkx3-1	ENSMUST00000053668.3|Gpr68|ENSMUSG00000047415.5|G protein-coupled receptor 68
mm10_v2_chr9_-_43116514_43116572	0.104893	Nkx3-1	ENSMUST00000061833.4|Tmem136|ENSMUSG00000048503.6|transmembrane protein 136
mm10_v2_chr9_+_40873981_40874127	0.101322	Nkx3-1	ENSMUST00000067375.3|Bsx|ENSMUSG00000054360.3|brain specific homeobox
mm10_v2_chr19_-_59943000_59943100	0.0991909	Nkx3-1	ENSMUST00000170819.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr17_-_35162969_35163040	0.0988473	Nkx3-1	ENSMUST00000174805.1|Prrc2a|ENSMUSG00000024393.8|proline-rich coiled-coil 2A
mm10_v2_chr19_+_43689672_43689695	0.0956051	Nkx3-1	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr10_-_14718191_14718228	0.0922597	Nkx3-1	ENSMUST00000020016.4|Gje1|ENSMUSG00000019867.4|gap junction protein, epsilon 1
mm10_v2_chr7_-_28598140_28598185	0.0670366	Nkx3-1	ENSMUST00000040531.8|Samd4b|ENSMUSG00000037513.9|sterile alpha motif domain containing 4B 	ENSMUST00000108283.1|Pak4|ENSMUSG00000030602.6|p21 protein (Cdc42/Rac)-activated kinase 4
mm10_v2_chr1_-_193035651_193035728	0.0661368	Nkx3-1	ENSMUST00000016344.7|Syt14|ENSMUSG00000016200.8|synaptotagmin XIV
mm10_v2_chr14_-_54864055_54864158	0.0637749	Nkx3-1	ENSMUST00000142283.2|Homez|ENSMUSG00000057156.9|homeodomain leucine zipper-encoding gene
mm10_v2_chr11_+_101279092_101279111	0.0599053	Nkx3-1	ENSMUST00000103107.4|Cntd1|ENSMUSG00000078653.4|cyclin N-terminal domain containing 1
mm10_v2_chr5_+_90367204_90367204	0.0595732	Nkx3-1	ENSMUST00000068250.3|Gm9958|ENSMUSG00000054945.3|predicted gene 9958
mm10_v2_chrY_+_17874741_17874741	0.0585441	Nkx3-1	ENSMUST00000177639.1|Gm20831|ENSMUSG00000094325.1|predicted gene, 20831
mm10_v2_chrX_+_7579666_7579693	0.0412357	Nkx3-1	ENSMUST00000115740.1|Foxp3|ENSMUSG00000039521.6|forkhead box P3 	ENSMUST00000115739.1|Foxp3|ENSMUSG00000039521.6|forkhead box P3
mm10_v2_chr2_+_174076296_174076356	0.0407903	Nkx3-1	ENSMUST00000155000.1|Stx16|ENSMUSG00000027522.9|syntaxin 16 	ENSMUST00000134876.1|Stx16|ENSMUSG00000027522.9|syntaxin 16 	ENSMUST00000147038.1|Stx16|ENSMUSG00000027522.9|syntaxin 16
mm10_v2_chr19_-_61297069_61297069	0.0377992	Nkx3-1	ENSMUST00000179346.1|Gm21060|ENSMUSG00000095993.1|predicted gene, 21060
mm10_v2_chr12_-_100159601_100159672	0.0317008	Nkx3-1	ENSMUST00000021596.7|Nrde2|ENSMUSG00000021179.7|nrde-2 necessary for RNA interference, domain containing
mm10_v2_chr7_-_35318408_35318440	0.0256975	Nkx3-1	ENSMUST00000079693.5|Gpatch1|ENSMUSG00000063808.8|G patch domain containing 1
mm10_v2_chr7_-_127930066_127930122	0.0192669	Nkx3-1	ENSMUST00000032988.8|Prss8|ENSMUSG00000030800.9|protease, serine, 8 (prostasin)
mm10_v2_chr5_+_142629537_142629593	0.0100222	Nkx3-1	ENSMUST00000036872.9|Wipi2|ENSMUSG00000029578.9|WD repeat domain, phosphoinositide interacting 2 	ENSMUST00000110778.1|Wipi2|ENSMUSG00000029578.9|WD repeat domain, phosphoinositide interacting 2
mm10_v2_chr17_+_84956718_84956745	0.00970751	Nkx3-1	ENSMUST00000112305.3|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform
