mm10_v2_chr9_-_22389113_22389206	1.19049	Pax1_Pax9	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr12_-_90969768_90969790	0.942141	Pax1_Pax9	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr4_-_110286581_110286617	0.85231	Pax1_Pax9	ENSMUST00000138972.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr2_+_84734050_84734107	0.770366	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr4_+_115000156_115000170	0.73308	Pax1_Pax9	ENSMUST00000030490.6|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr4_+_11558914_11558979	0.703773	Pax1_Pax9	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chr9_+_96196246_96196280	0.603843	Pax1_Pax9	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr18_+_69344503_69344530	0.601109	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr4_+_115000174_115000189	0.599207	Pax1_Pax9	ENSMUST00000129957.1|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr17_-_27909206_27909264	0.497271	Pax1_Pax9	ENSMUST00000114848.1|Taf11|ENSMUSG00000024218.6|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr2_-_36105271_36105434	0.485185	Pax1_Pax9	ENSMUST00000112960.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112967.5|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112963.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr9_+_21337828_21337859	0.44692	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
mm10_v2_chr13_-_62520451_62520544	0.438618	Pax1_Pax9	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chr13_-_62607499_62607499	0.404693	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr19_-_7105729_7105729	0.397552	Pax1_Pax9	ENSMUST00000113383.2|Flrt1|ENSMUSG00000047787.7|fibronectin leucine rich transmembrane protein 1
mm10_v2_chr17_+_27909337_27909409	0.36326	Pax1_Pax9	ENSMUST00000114842.1|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000025058.7|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1 	ENSMUST00000088027.5|Anks1|ENSMUSG00000024219.9|ankyrin repeat and SAM domain containing 1
mm10_v2_chr13_-_62777089_62777089	0.325351	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr8_+_94838321_94838429	0.324375	Pax1_Pax9	ENSMUST00000034234.8|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast) 	ENSMUST00000159871.1|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast)
mm10_v2_chr4_-_143299498_143299564	0.247562	Pax1_Pax9	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr5_-_129787175_129787259	0.212359	Pax1_Pax9	ENSMUST00000031399.6|Psph|ENSMUSG00000029446.8|phosphoserine phosphatase
mm10_v2_chr12_+_33957645_33957671	0.210298	Pax1_Pax9	ENSMUST00000049089.5|Twist1|ENSMUSG00000035799.5|twist basic helix-loop-helix transcription factor 1
mm10_v2_chr5_-_31291026_31291143	0.208949	Pax1_Pax9	ENSMUST00000041565.7|Ift172|ENSMUSG00000038564.7|intraflagellar transport 172
mm10_v2_chr19_-_29047847_29047977	0.199245	Pax1_Pax9	ENSMUST00000025696.4|Ak3|ENSMUSG00000024782.7|adenylate kinase 3
mm10_v2_chr5_-_93206489_93206498	0.132157	Pax1_Pax9	ENSMUST00000058550.8|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chr8_-_94838255_94838358	0.116584	Pax1_Pax9	ENSMUST00000161762.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1 	ENSMUST00000162538.1|Ciapin1|ENSMUSG00000031781.7|cytokine induced apoptosis inhibitor 1
mm10_v2_chr7_-_24299310_24299368	0.112034	Pax1_Pax9	ENSMUST00000145131.1|Zfp61|ENSMUSG00000050605.11|zinc finger protein 61
mm10_v2_chr6_-_88518760_88518905	0.108063	Pax1_Pax9	ENSMUST00000032168.5|Sec61a1|ENSMUSG00000030082.8|Sec61 alpha 1 subunit (S. cerevisiae)
mm10_v2_chr9_-_97111117_97111159	0.0979862	Pax1_Pax9	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr18_-_10706688_10706771	0.0975543	Pax1_Pax9	ENSMUST00000002549.7|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117726.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3 	ENSMUST00000117828.1|Abhd3|ENSMUSG00000002475.9|abhydrolase domain containing 3
mm10_v2_chr5_-_93206428_93206470	0.092913	Pax1_Pax9	ENSMUST00000144514.1|Ccni|ENSMUSG00000063015.6|cyclin I
mm10_v2_chrX_+_86191764_86191782	0.0509327	Pax1_Pax9	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
mm10_v2_chr4_-_143299463_143299482	0.0473187	Pax1_Pax9	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr11_+_83753689_83753722	0.0158059	Pax1_Pax9	ENSMUST00000001002.7|Heatr6|ENSMUSG00000000976.7|HEAT repeat containing 6
mm10_v2_chr5_+_112255813_112255874	0.0151438	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
mm10_v2_chr6_-_145048809_145048821	0.0121905	Pax1_Pax9	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
