mm10_v2_chr18_+_60925612_60925639	56.9966	Rfx3_Rfx1_Rfx4	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr15_+_98167806_98167873	19.8739	Rfx3_Rfx1_Rfx4	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr18_+_60925644_60925725	17.906	Rfx3_Rfx1_Rfx4	ENSMUST00000115297.1|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr7_-_31051431_31051488	17.0993	Rfx3_Rfx1_Rfx4	ENSMUST00000073892.4|Fxyd7|ENSMUSG00000036578.6|FXYD domain-containing ion transport regulator 7
mm10_v2_chr5_+_24985840_24985862	16.7201	Rfx3_Rfx1_Rfx4	ENSMUST00000075081.6|1500035N22Rik|ENSMUSG00000059631.6|RIKEN cDNA 1500035N22 gene
mm10_v2_chrX_+_7919816_7919905	15.4259	Rfx3_Rfx1_Rfx4	ENSMUST00000041096.3|Pcsk1n|ENSMUSG00000039278.10|proprotein convertase subtilisin/kexin type 1 inhibitor
mm10_v2_chr7_-_140082246_140082301	15.2374	Rfx3_Rfx1_Rfx4	ENSMUST00000166758.2|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr7_-_140082489_140082556	14.8826	Rfx3_Rfx1_Rfx4	ENSMUST00000026541.7|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr4_-_119415494_119415522	14.2977	Rfx3_Rfx1_Rfx4	ENSMUST00000063642.2|Ccdc30|ENSMUSG00000028637.9|coiled-coil domain containing 30
mm10_v2_chr11_-_105944412_105944518	14.1355	Rfx3_Rfx1_Rfx4	ENSMUST00000019734.4|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000184269.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000150563.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr8_+_94772009_94772009	13.0855	Rfx3_Rfx1_Rfx4	ENSMUST00000034230.5|Cx3cl1|ENSMUSG00000031778.6|chemokine (C-X3-C motif) ligand 1
mm10_v2_chr2_+_121289589_121289606	12.1255	Rfx3_Rfx1_Rfx4	ENSMUST00000094639.3|Map1a|ENSMUSG00000027254.7|microtubule-associated protein 1 A
mm10_v2_chr11_-_105944128_105944223	11.4461	Rfx3_Rfx1_Rfx4	ENSMUST00000184086.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr12_-_84148449_84148499	11.2648	Rfx3_Rfx1_Rfx4	ENSMUST00000061425.2|Pnma1|ENSMUSG00000054383.2|paraneoplastic antigen MA1
mm10_v2_chr9_+_59589288_59589353	10.1091	Rfx3_Rfx1_Rfx4	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr7_-_4546567_4546567	10.0897	Rfx3_Rfx1_Rfx4	ENSMUST00000065957.5|Syt5|ENSMUSG00000004961.6|synaptotagmin V
mm10_v2_chr7_+_126847908_126847962	9.44021	Rfx3_Rfx1_Rfx4	ENSMUST00000147257.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha 	ENSMUST00000139174.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha
mm10_v2_chr19_-_57197556_57197631	9.18348	Rfx3_Rfx1_Rfx4	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_57197435_57197460	9.03059	Rfx3_Rfx1_Rfx4	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr17_+_34629533_34629620	8.93215	Rfx3_Rfx1_Rfx4	ENSMUST00000015620.6|Prrt1|ENSMUSG00000015476.6|proline-rich transmembrane protein 1
mm10_v2_chr16_-_16829276_16829349	8.83091	Rfx3_Rfx1_Rfx4	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr2_-_118256929_118256973	8.77957	Rfx3_Rfx1_Rfx4	ENSMUST00000028820.6|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1 	ENSMUST00000028821.3|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1
mm10_v2_chr19_-_57197377_57197417	8.76208	Rfx3_Rfx1_Rfx4	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_57197496_57197536	8.75458	Rfx3_Rfx1_Rfx4	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr7_+_99268338_99268388	8.74353	Rfx3_Rfx1_Rfx4	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr7_+_16959714_16959800	8.56662	Rfx3_Rfx1_Rfx4	ENSMUST00000038163.6|Pnmal1|ENSMUSG00000041141.6|PNMA-like 1
mm10_v2_chr7_+_131966446_131966469	8.45881	Rfx3_Rfx1_Rfx4	ENSMUST00000045840.4|Gpr26|ENSMUSG00000040125.4|G protein-coupled receptor 26
mm10_v2_chr7_+_3303503_3303565	8.12501	Rfx3_Rfx1_Rfx4	ENSMUST00000100301.4|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr5_-_142550965_142551110	8.02715	Rfx3_Rfx1_Rfx4	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr10_-_81472859_81473127	7.94213	Rfx3_Rfx1_Rfx4	ENSMUST00000147524.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5 	ENSMUST00000119060.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5
mm10_v2_chr4_+_129960760_129960808	7.92384	Rfx3_Rfx1_Rfx4	ENSMUST00000139884.1|1700003M07Rik|ENSMUSG00000085389.1|RIKEN cDNA 1700003M07 gene
mm10_v2_chr1_-_60043087_60043175	7.89597	Rfx3_Rfx1_Rfx4	ENSMUST00000027172.6|Ica1l|ENSMUSG00000026018.6|islet cell autoantigen 1-like
mm10_v2_chr13_+_91461050_91461125	7.85374	Rfx3_Rfx1_Rfx4	ENSMUST00000004094.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2 	ENSMUST00000042122.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2
mm10_v2_chr3_-_88458876_88459043	7.76494	Rfx3_Rfx1_Rfx4	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr5_+_120431770_120431905	7.76128	Rfx3_Rfx1_Rfx4	ENSMUST00000031591.7|Lhx5|ENSMUSG00000029595.7|LIM homeobox protein 5
mm10_v2_chr7_+_3303643_3303654	7.58444	Rfx3_Rfx1_Rfx4	ENSMUST00000172109.1|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr3_-_88459047_88459101	7.56952	Rfx3_Rfx1_Rfx4	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr8_-_95142477_95142577	7.55967	Rfx3_Rfx1_Rfx4	ENSMUST00000034240.7|Kifc3|ENSMUSG00000031788.7|kinesin family member C3 	ENSMUST00000169748.1|Kifc3|ENSMUSG00000031788.7|kinesin family member C3
mm10_v2_chr13_+_24845122_24845186	7.46173	Rfx3_Rfx1_Rfx4	ENSMUST00000006893.8|D130043K22Rik|ENSMUSG00000006711.9|RIKEN cDNA D130043K22 gene
mm10_v2_chr1_+_66386968_66386999	7.35971	Rfx3_Rfx1_Rfx4	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr19_-_46327121_46327156	6.94611	Rfx3_Rfx1_Rfx4	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr17_+_46254017_46254165	6.94546	Rfx3_Rfx1_Rfx4	ENSMUST00000095262.4|Lrrc73|ENSMUSG00000071073.4|leucine rich repeat containing 73
mm10_v2_chr4_+_123183456_123183601	6.86425	Rfx3_Rfx1_Rfx4	ENSMUST00000126995.1|Hpcal4|ENSMUSG00000046093.3|hippocalcin-like 4
mm10_v2_chr16_+_14906622_14906680	6.84447	Rfx3_Rfx1_Rfx4	ENSMUST00000090277.1|Efcab1|ENSMUSG00000068617.4|EF hand calcium binding domain 1
mm10_v2_chr19_+_47178820_47178997	6.73774	Rfx3_Rfx1_Rfx4	ENSMUST00000111808.3|Neurl1a|ENSMUSG00000006435.9|neuralized homolog 1A (Drosophila)
mm10_v2_chr1_-_87510306_87510373	6.58247	Rfx3_Rfx1_Rfx4	ENSMUST00000027477.8|Ngef|ENSMUSG00000026259.8|neuronal guanine nucleotide exchange factor
mm10_v2_chr15_+_54745702_54745702	6.21972	Rfx3_Rfx1_Rfx4	ENSMUST00000050027.8|Nov|ENSMUSG00000037362.8|nephroblastoma overexpressed gene
mm10_v2_chr10_-_13868779_13868874	6.1846	Rfx3_Rfx1_Rfx4	ENSMUST00000105534.3|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr4_+_152338619_152338709	6.17675	Rfx3_Rfx1_Rfx4	ENSMUST00000030775.5|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5 	ENSMUST00000164662.1|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr5_-_92042630_92042701	6.16299	Rfx3_Rfx1_Rfx4	ENSMUST00000113140.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase) 	ENSMUST00000113143.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm10_v2_chr15_+_89532816_89532890	6.14566	Rfx3_Rfx1_Rfx4	ENSMUST00000167173.1|Shank3|ENSMUSG00000022623.9|SH3/ankyrin domain gene 3
mm10_v2_chr7_+_45785331_45785390	6.11983	Rfx3_Rfx1_Rfx4	ENSMUST00000120005.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000123585.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr10_-_13868932_13869004	6.05045	Rfx3_Rfx1_Rfx4	ENSMUST00000019942.5|Aig1|ENSMUSG00000019806.7|androgen-induced 1 	ENSMUST00000162610.1|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr4_-_153482768_153482811	5.98331	Rfx3_Rfx1_Rfx4	ENSMUST00000105646.2|Ajap1|ENSMUSG00000039546.9|adherens junction associated protein 1
mm10_v2_chr4_+_152338887_152338967	5.97195	Rfx3_Rfx1_Rfx4	ENSMUST00000005175.4|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr4_+_57434247_57434368	5.77894	Rfx3_Rfx1_Rfx4	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr18_+_23803962_23804054	5.76954	Rfx3_Rfx1_Rfx4	ENSMUST00000025127.3|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr9_+_47530173_47530373	5.73192	Rfx3_Rfx1_Rfx4	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr1_-_84696182_84696221	5.71322	Rfx3_Rfx1_Rfx4	ENSMUST00000049126.6|Dner|ENSMUSG00000036766.6|delta/notch-like EGF-related receptor
mm10_v2_chr7_+_16944645_16944720	5.60954	Rfx3_Rfx1_Rfx4	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr11_+_70029742_70029837	5.57713	Rfx3_Rfx1_Rfx4	ENSMUST00000132597.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr15_-_33687840_33687883	5.52141	Rfx3_Rfx1_Rfx4	ENSMUST00000042021.3|Tspyl5|ENSMUSG00000038984.3|testis-specific protein, Y-encoded-like 5
mm10_v2_chr7_+_3390629_3390707	5.49188	Rfx3_Rfx1_Rfx4	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr13_+_55464237_55464319	5.38666	Rfx3_Rfx1_Rfx4	ENSMUST00000046533.7|Prr7|ENSMUSG00000034686.7|proline rich 7 (synaptic)
mm10_v2_chr4_+_137681663_137681719	5.26724	Rfx3_Rfx1_Rfx4	ENSMUST00000047243.5|Rap1gap|ENSMUSG00000041351.10|Rap1 GTPase-activating protein
mm10_v2_chr11_+_87760533_87760587	5.24451	Rfx3_Rfx1_Rfx4	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr1_+_161142706_161142767	5.23866	Rfx3_Rfx1_Rfx4	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr12_-_69790660_69790735	5.20089	Rfx3_Rfx1_Rfx4	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr9_-_121839460_121839465	5.17681	Rfx3_Rfx1_Rfx4	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr11_-_74897052_74897094	5.13964	Rfx3_Rfx1_Rfx4	ENSMUST00000057631.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2 	ENSMUST00000081799.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2
mm10_v2_chr1_+_161142661_161142701	5.10599	Rfx3_Rfx1_Rfx4	ENSMUST00000125018.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr5_-_103211251_103211334	5.0132	Rfx3_Rfx1_Rfx4	ENSMUST00000060871.5|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112846.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000170792.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112847.2|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr12_+_80518990_80519087	4.91979	Rfx3_Rfx1_Rfx4	ENSMUST00000021558.6|Galnt16|ENSMUSG00000021130.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
mm10_v2_chr8_-_64733534_64733554	4.91163	Rfx3_Rfx1_Rfx4	ENSMUST00000141021.1|Sc4mol|ENSMUSG00000031604.4|sterol-C4-methyl oxidase-like
mm10_v2_chr15_-_79062866_79062941	4.75808	Rfx3_Rfx1_Rfx4	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr7_+_139894696_139894854	4.62716	Rfx3_Rfx1_Rfx4	ENSMUST00000151421.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000053445.9|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000121839.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1
mm10_v2_chr5_+_111581422_111581422	4.5975	Rfx3_Rfx1_Rfx4	ENSMUST00000064930.3|C130026L21Rik|ENSMUSG00000052848.3|RIKEN cDNA C130026L21 gene
mm10_v2_chr9_-_29412204_29412277	4.57974	Rfx3_Rfx1_Rfx4	ENSMUST00000115237.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr17_+_28142267_28142321	4.55494	Rfx3_Rfx1_Rfx4	ENSMUST00000043503.3|Scube3|ENSMUSG00000038677.7|signal peptide, CUB domain, EGF-like 3
mm10_v2_chr3_+_67374116_67374154	4.55367	Rfx3_Rfx1_Rfx4	ENSMUST00000061322.8|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr3_+_67374091_67374102	4.53805	Rfx3_Rfx1_Rfx4	ENSMUST00000077916.5|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr17_+_27685197_27685233	4.39207	Rfx3_Rfx1_Rfx4	ENSMUST00000097360.2|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr11_-_89302545_89302567	4.3612	Rfx3_Rfx1_Rfx4	ENSMUST00000061728.3|Nog|ENSMUSG00000048616.3|noggin
mm10_v2_chr10_+_34297421_34297513	4.26216	Rfx3_Rfx1_Rfx4	ENSMUST00000047935.6|Tspyl4|ENSMUSG00000039485.6|TSPY-like 4
mm10_v2_chr3_-_89245159_89245199	4.23362	Rfx3_Rfx1_Rfx4	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr3_-_89245005_89245031	4.21511	Rfx3_Rfx1_Rfx4	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr11_-_116335384_116335399	4.1793	Rfx3_Rfx1_Rfx4	ENSMUST00000036215.7|Foxj1|ENSMUSG00000034227.7|forkhead box J1
mm10_v2_chr5_-_115652974_115652992	4.12243	Rfx3_Rfx1_Rfx4	ENSMUST00000121746.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64 	ENSMUST00000118576.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64
mm10_v2_chr11_-_61453992_61454106	4.09922	Rfx3_Rfx1_Rfx4	ENSMUST00000060255.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000054927.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000102661.3|Rnf112|ENSMUSG00000010086.11|ring finger protein 112
mm10_v2_chr2_-_5714490_5714538	4.01011	Rfx3_Rfx1_Rfx4	ENSMUST00000044009.7|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr15_-_98953541_98953560	3.93344	Rfx3_Rfx1_Rfx4	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chrX_+_36195938_36195946	3.92574	Rfx3_Rfx1_Rfx4	ENSMUST00000048067.3|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr4_+_111719975_111720047	3.88747	Rfx3_Rfx1_Rfx4	ENSMUST00000038868.7|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6 	ENSMUST00000070513.6|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6 	ENSMUST00000153746.1|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6
mm10_v2_chrX_+_36195950_36195959	3.83797	Rfx3_Rfx1_Rfx4	ENSMUST00000115257.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr19_+_45560569_45560644	3.83638	Rfx3_Rfx1_Rfx4	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chrX_+_36195904_36195932	3.83046	Rfx3_Rfx1_Rfx4	ENSMUST00000115258.2|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr2_+_71981184_71981287	3.80795	Rfx3_Rfx1_Rfx4	ENSMUST00000090826.5|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4 	ENSMUST00000102698.3|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr11_-_67965631_67965663	3.79857	Rfx3_Rfx1_Rfx4	ENSMUST00000021287.5|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16 	ENSMUST00000126766.1|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16
mm10_v2_chr2_-_30048827_30048891	3.76513	Rfx3_Rfx1_Rfx4	ENSMUST00000113711.2|Wdr34|ENSMUSG00000039715.8|WD repeat domain 34
mm10_v2_chr3_-_126998408_126998463	3.75785	Rfx3_Rfx1_Rfx4	ENSMUST00000182764.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000044443.8|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr11_+_49794157_49794187	3.73311	Rfx3_Rfx1_Rfx4	ENSMUST00000020629.4|Gfpt2|ENSMUSG00000020363.6|glutamine fructose-6-phosphate transaminase 2
mm10_v2_chr12_+_113140198_113140257	3.72475	Rfx3_Rfx1_Rfx4	ENSMUST00000084882.4|Crip2|ENSMUSG00000006356.6|cysteine rich protein 2
mm10_v2_chr12_+_5411641_5411641	3.71757	Rfx3_Rfx1_Rfx4	ENSMUST00000163627.1|2810032G03Rik|ENSMUSG00000037735.6|RIKEN cDNA 2810032G03 gene
mm10_v2_chr11_-_76468396_76468473	3.68493	Rfx3_Rfx1_Rfx4	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr11_-_6606053_6606053	3.66131	Rfx3_Rfx1_Rfx4	ENSMUST00000045713.3|Nacad|ENSMUSG00000041073.4|NAC alpha domain containing
mm10_v2_chr5_+_21424934_21425013	3.62328	Rfx3_Rfx1_Rfx4	ENSMUST00000056045.4|Fam185a|ENSMUSG00000047221.5|family with sequence similarity 185, member A
mm10_v2_chr9_+_59578192_59578337	3.57194	Rfx3_Rfx1_Rfx4	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr9_-_60688118_60688184	3.53891	Rfx3_Rfx1_Rfx4	ENSMUST00000114034.2|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000065603.5|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr6_-_115838412_115838412	3.5366	Rfx3_Rfx1_Rfx4	ENSMUST00000032468.5|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12 	ENSMUST00000184428.1|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12
mm10_v2_chr4_+_111720187_111720205	3.51561	Rfx3_Rfx1_Rfx4	ENSMUST00000084354.3|Spata6|ENSMUSG00000034401.10|spermatogenesis associated 6
mm10_v2_chr14_-_8309770_8309795	3.50714	Rfx3_Rfx1_Rfx4	ENSMUST00000121887.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000036070.8|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A 	ENSMUST00000137133.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr5_-_136170634_136170661	3.49188	Rfx3_Rfx1_Rfx4	ENSMUST00000041048.1|Orai2|ENSMUSG00000039747.7|ORAI calcium release-activated calcium modulator 2
mm10_v2_chr9_-_106685892_106685961	3.47512	Rfx3_Rfx1_Rfx4	ENSMUST00000169068.1|Tex264|ENSMUSG00000040813.9|testis expressed gene 264 	ENSMUST00000046735.4|Tex264|ENSMUSG00000040813.9|testis expressed gene 264
mm10_v2_chrX_+_36195968_36195993	3.46915	Rfx3_Rfx1_Rfx4	ENSMUST00000115256.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr2_+_118663235_118663309	3.4586	Rfx3_Rfx1_Rfx4	ENSMUST00000099557.3|Pak6|ENSMUSG00000074923.4|p21 protein (Cdc42/Rac)-activated kinase 6
mm10_v2_chr17_+_85620816_85620843	3.44308	Rfx3_Rfx1_Rfx4	ENSMUST00000175898.2|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr8_+_123235086_123235096	3.42168	Rfx3_Rfx1_Rfx4	ENSMUST00000181432.1|4933417D19Rik|ENSMUSG00000097637.1|RIKEN cDNA 4933417D19 gene
mm10_v2_chr9_-_106685653_106685674	3.38164	Rfx3_Rfx1_Rfx4	ENSMUST00000163441.1|Tex264|ENSMUSG00000040813.9|testis expressed gene 264
mm10_v2_chr5_-_137531204_137531297	3.37363	Rfx3_Rfx1_Rfx4	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr3_+_82358056_82358075	3.35752	Rfx3_Rfx1_Rfx4	ENSMUST00000091014.4|Map9|ENSMUSG00000033900.8|microtubule-associated protein 9
mm10_v2_chr9_-_70141484_70141578	3.34776	Rfx3_Rfx1_Rfx4	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr16_-_3909192_3909192	3.29351	Rfx3_Rfx1_Rfx4	ENSMUST00000181699.1|1700016D08Rik|ENSMUSG00000097179.1|RIKEN cDNA 1700016D08 gene
mm10_v2_chr9_+_82829806_82829834	3.24095	Rfx3_Rfx1_Rfx4	ENSMUST00000113245.2|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1 	ENSMUST00000034783.4|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1
mm10_v2_chr17_-_85090204_85090275	3.23443	Rfx3_Rfx1_Rfx4	ENSMUST00000072406.3|Prepl|ENSMUSG00000024127.8|prolyl endopeptidase-like 	ENSMUST00000171795.1|Prepl|ENSMUSG00000024127.8|prolyl endopeptidase-like
mm10_v2_chr8_-_22805596_22805654	3.20549	Rfx3_Rfx1_Rfx4	ENSMUST00000163739.1|Ap3m2|ENSMUSG00000031539.5|adaptor-related protein complex 3, mu 2 subunit
mm10_v2_chr8_-_111933761_111933816	3.19412	Rfx3_Rfx1_Rfx4	ENSMUST00000034429.7|Tmem231|ENSMUSG00000031951.7|transmembrane protein 231
mm10_v2_chr7_-_118705708_118705786	3.16843	Rfx3_Rfx1_Rfx4	ENSMUST00000038791.8|Gde1|ENSMUSG00000033917.8|glycerophosphodiester phosphodiesterase 1
mm10_v2_chr17_+_12119274_12119348	3.11804	Rfx3_Rfx1_Rfx4	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr2_-_164857542_164857652	3.10635	Rfx3_Rfx1_Rfx4	ENSMUST00000109316.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000156255.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000128110.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000109317.3|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr2_-_118703963_118703963	3.10177	Rfx3_Rfx1_Rfx4	ENSMUST00000104937.1|Ankrd63|ENSMUSG00000078137.1|ankyrin repeat domain 63
mm10_v2_chr11_+_43474276_43474340	3.0873	Rfx3_Rfx1_Rfx4	ENSMUST00000173002.1|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2 	ENSMUST00000057679.3|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2
mm10_v2_chr4_+_109343029_109343081	3.08506	Rfx3_Rfx1_Rfx4	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr8_+_123212857_123212911	2.99959	Rfx3_Rfx1_Rfx4	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chr13_+_42681513_42681564	2.95439	Rfx3_Rfx1_Rfx4	ENSMUST00000149235.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr4_+_105790534_105790534	2.94413	Rfx3_Rfx1_Rfx4	ENSMUST00000185012.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr7_+_133776857_133776942	2.9285	Rfx3_Rfx1_Rfx4	ENSMUST00000065359.5|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000151031.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000121560.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1
mm10_v2_chr5_+_33983534_33983548	2.92164	Rfx3_Rfx1_Rfx4	ENSMUST00000114382.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr9_-_110476637_110476694	2.91041	Rfx3_Rfx1_Rfx4	ENSMUST00000111934.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18 	ENSMUST00000068025.6|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr8_-_106337987_106337996	2.90189	Rfx3_Rfx1_Rfx4	ENSMUST00000067512.7|Smpd3|ENSMUSG00000031906.8|sphingomyelin phosphodiesterase 3, neutral
mm10_v2_chr8_-_119575143_119575205	2.8968	Rfx3_Rfx1_Rfx4	ENSMUST00000036049.4|Hsdl1|ENSMUSG00000034189.4|hydroxysteroid dehydrogenase like 1
mm10_v2_chr7_+_16738410_16738476	2.86779	Rfx3_Rfx1_Rfx4	ENSMUST00000086112.6|Ap2s1|ENSMUSG00000008036.10|adaptor-related protein complex 2, sigma 1 subunit
mm10_v2_chr8_-_78821136_78821143	2.86754	Rfx3_Rfx1_Rfx4	ENSMUST00000130325.1|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENSMUST00000051867.6|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr11_-_59839828_59839843	2.84301	Rfx3_Rfx1_Rfx4	ENSMUST00000019517.3|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr15_-_71727815_71727848	2.83291	Rfx3_Rfx1_Rfx4	ENSMUST00000022953.8|Fam135b|ENSMUSG00000036800.7|family with sequence similarity 135, member B
mm10_v2_chr5_+_33983437_33983529	2.82752	Rfx3_Rfx1_Rfx4	ENSMUST00000114384.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000094869.5|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000114383.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr13_-_92483996_92484037	2.82635	Rfx3_Rfx1_Rfx4	ENSMUST00000040106.7|Fam151b|ENSMUSG00000034334.7|family with sequence similarity 151, member B
mm10_v2_chr2_+_152962485_152962510	2.81119	Rfx3_Rfx1_Rfx4	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr9_+_63602650_63602703	2.80521	Rfx3_Rfx1_Rfx4	ENSMUST00000041551.7|Aagab|ENSMUSG00000037257.7|alpha- and gamma-adaptin binding protein
mm10_v2_chr13_-_49309217_49309257	2.77616	Rfx3_Rfx1_Rfx4	ENSMUST00000110087.2|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr18_-_77047282_77047313	2.76619	Rfx3_Rfx1_Rfx4	ENSMUST00000154665.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000026486.6|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000123650.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000126153.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2
mm10_v2_chr18_-_77047243_77047279	2.74173	Rfx3_Rfx1_Rfx4	ENSMUST00000137354.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2 	ENSMUST00000137498.1|Katnal2|ENSMUSG00000025420.7|katanin p60 subunit A-like 2
mm10_v2_chr15_+_82256023_82256130	2.73303	Rfx3_Rfx1_Rfx4	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chrX_+_136590841_136590866	2.72832	Rfx3_Rfx1_Rfx4	ENSMUST00000138047.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3 	ENSMUST00000145648.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3
mm10_v2_chr2_-_21205342_21205371	2.71769	Rfx3_Rfx1_Rfx4	ENSMUST00000027992.2|Enkur|ENSMUSG00000026679.3|enkurin, TRPC channel interacting protein
mm10_v2_chr17_-_25837082_25837295	2.70479	Rfx3_Rfx1_Rfx4	ENSMUST00000183929.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000184865.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000026831.7|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila)
mm10_v2_chr13_-_49320219_49320311	2.69993	Rfx3_Rfx1_Rfx4	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr8_+_95534078_95534123	2.69858	Rfx3_Rfx1_Rfx4	ENSMUST00000041569.3|Ccdc113|ENSMUSG00000036598.3|coiled-coil domain containing 113
mm10_v2_chr4_-_117125618_117125683	2.68877	Rfx3_Rfx1_Rfx4	ENSMUST00000183310.1|Btbd19|ENSMUSG00000073771.5|BTB (POZ) domain containing 19
mm10_v2_chr3_-_127225847_127225915	2.64947	Rfx3_Rfx1_Rfx4	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr9_+_20652107_20652138	2.64398	Rfx3_Rfx1_Rfx4	ENSMUST00000034689.6|Pin1|ENSMUSG00000032171.6|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm10_v2_chr7_+_116504363_116504397	2.58487	Rfx3_Rfx1_Rfx4	ENSMUST00000032895.8|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chr1_-_152766281_152766319	2.57274	Rfx3_Rfx1_Rfx4	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr9_-_98563580_98563620	2.54674	Rfx3_Rfx1_Rfx4	ENSMUST00000058992.2|4930579K19Rik|ENSMUSG00000051074.2|RIKEN cDNA 4930579K19 gene
mm10_v2_chr11_-_59839745_59839763	2.54179	Rfx3_Rfx1_Rfx4	ENSMUST00000141415.1|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr7_+_139212974_139212993	2.51824	Rfx3_Rfx1_Rfx4	ENSMUST00000016124.8|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr5_-_124187150_124187225	2.50563	Rfx3_Rfx1_Rfx4	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr3_-_89214378_89214430	2.48043	Rfx3_Rfx1_Rfx4	ENSMUST00000073572.4|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr3_+_90079540_90079715	2.4563	Rfx3_Rfx1_Rfx4	ENSMUST00000029549.9|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000118566.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000119158.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma
mm10_v2_chr7_-_45830776_45830944	2.45163	Rfx3_Rfx1_Rfx4	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr16_-_93603803_93603815	2.43823	Rfx3_Rfx1_Rfx4	ENSMUST00000023669.5|Setd4|ENSMUSG00000022948.8|SET domain containing 4 	ENSMUST00000113951.2|Setd4|ENSMUSG00000022948.8|SET domain containing 4
mm10_v2_chr18_-_43687695_43687773	2.42309	Rfx3_Rfx1_Rfx4	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr5_-_115300912_115300944	2.41809	Rfx3_Rfx1_Rfx4	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr8_-_84104773_84104793	2.40487	Rfx3_Rfx1_Rfx4	ENSMUST00000041367.7|Dcaf15|ENSMUSG00000037103.7|DDB1 and CUL4 associated factor 15
mm10_v2_chr7_+_116504409_116504430	2.40165	Rfx3_Rfx1_Rfx4	ENSMUST00000183175.1|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chr15_+_100761741_100761797	2.39505	Rfx3_Rfx1_Rfx4	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr3_+_118433797_118433966	2.36493	Rfx3_Rfx1_Rfx4	ENSMUST00000180593.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871 	ENSMUST00000181926.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871 	ENSMUST00000181060.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871 	ENSMUST00000181310.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871
mm10_v2_chr3_-_127225917_127225959	2.36323	Rfx3_Rfx1_Rfx4	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr15_-_103215285_103215366	2.34636	Rfx3_Rfx1_Rfx4	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr1_+_172521044_172521181	2.34266	Rfx3_Rfx1_Rfx4	ENSMUST00000085894.5|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000161140.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000162988.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19
mm10_v2_chr5_-_115300957_115300999	2.31966	Rfx3_Rfx1_Rfx4	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr17_-_87446854_87446935	2.31637	Rfx3_Rfx1_Rfx4	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr6_+_117906755_117906801	2.29814	Rfx3_Rfx1_Rfx4	ENSMUST00000170346.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000179224.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000035493.7|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F
mm10_v2_chr18_-_12305638_12305720	2.26738	Rfx3_Rfx1_Rfx4	ENSMUST00000122408.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000118525.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000142066.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29
mm10_v2_chr17_+_34604262_34604304	2.26604	Rfx3_Rfx1_Rfx4	ENSMUST00000174041.1|Agpat1|ENSMUSG00000034254.11|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm10_v2_chr4_+_86930691_86930713	2.2339	Rfx3_Rfx1_Rfx4	ENSMUST00000164590.1|Acer2|ENSMUSG00000091609.1|alkaline ceramidase 2
mm10_v2_chr17_-_31277327_31277356	2.23175	Rfx3_Rfx1_Rfx4	ENSMUST00000024832.7|Rsph1|ENSMUSG00000024033.9|radial spoke head 1 homolog (Chlamydomonas)
mm10_v2_chrX_+_136993147_136993216	2.23113	Rfx3_Rfx1_Rfx4	ENSMUST00000113067.1|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18 	ENSMUST00000101227.2|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr11_+_53567361_53567526	2.20299	Rfx3_Rfx1_Rfx4	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr17_-_34603675_34603702	2.18679	Rfx3_Rfx1_Rfx4	ENSMUST00000015622.7|Rnf5|ENSMUSG00000015478.7|ring finger protein 5
mm10_v2_chr10_+_42860648_42860676	2.1755	Rfx3_Rfx1_Rfx4	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr3_+_65109343_65109420	2.1696	Rfx3_Rfx1_Rfx4	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr12_-_72070991_72071079	2.16423	Rfx3_Rfx1_Rfx4	ENSMUST00000050649.4|Gpr135|ENSMUSG00000043398.4|G protein-coupled receptor 135
mm10_v2_chr5_+_29195983_29196032	2.1575	Rfx3_Rfx1_Rfx4	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr5_-_114813943_114813976	2.15661	Rfx3_Rfx1_Rfx4	ENSMUST00000061251.5|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene 	ENSMUST00000112160.3|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene
mm10_v2_chr2_+_36049453_36049507	2.15125	Rfx3_Rfx1_Rfx4	ENSMUST00000028256.4|Morn5|ENSMUSG00000026894.4|MORN repeat containing 5
mm10_v2_chr3_+_29082539_29082771	2.14738	Rfx3_Rfx1_Rfx4	ENSMUST00000119598.1|Egfem1|ENSMUSG00000063600.8|EGF-like and EMI domain containing 1 	ENSMUST00000118531.1|Egfem1|ENSMUSG00000063600.8|EGF-like and EMI domain containing 1
mm10_v2_chr5_+_124598749_124598798	2.13945	Rfx3_Rfx1_Rfx4	ENSMUST00000130912.1|Tctn2|ENSMUSG00000029386.9|tectonic family member 2 	ENSMUST00000100706.3|Tctn2|ENSMUSG00000029386.9|tectonic family member 2
mm10_v2_chr19_-_4283033_4283142	2.12544	Rfx3_Rfx1_Rfx4	ENSMUST00000167215.1|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D 	ENSMUST00000056888.6|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D
mm10_v2_chr15_-_84557776_84557875	2.11659	Rfx3_Rfx1_Rfx4	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr17_-_80290476_80290476	2.10966	Rfx3_Rfx1_Rfx4	ENSMUST00000086555.3|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 	ENSMUST00000038166.7|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm10_v2_chr12_-_32061221_32061301	2.10482	Rfx3_Rfx1_Rfx4	ENSMUST00000003079.5|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta 	ENSMUST00000036497.9|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta
mm10_v2_chr5_-_129008494_129008537	2.09644	Rfx3_Rfx1_Rfx4	ENSMUST00000100680.3|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr2_+_145934800_145934816	2.07748	Rfx3_Rfx1_Rfx4	ENSMUST00000138774.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000152515.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000130168.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000133433.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000118002.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene
mm10_v2_chr16_+_3908801_3909031	2.0668	Rfx3_Rfx1_Rfx4	ENSMUST00000145150.2|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1 	ENSMUST00000040881.7|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1
mm10_v2_chr8_+_36993551_36993611	2.04961	Rfx3_Rfx1_Rfx4	ENSMUST00000098825.3|AI429214|ENSMUSG00000074384.3|expressed sequence AI429214
mm10_v2_chr3_+_13946368_13946379	2.0395	Rfx3_Rfx1_Rfx4	ENSMUST00000171075.1|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like 	ENSMUST00000108372.2|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like
mm10_v2_chr1_-_172329261_172329307	2.03704	Rfx3_Rfx1_Rfx4	ENSMUST00000062387.2|Kcnj9|ENSMUSG00000038026.7|potassium inwardly-rectifying channel, subfamily J, member 9
mm10_v2_chr9_+_107547288_107547379	2.03602	Rfx3_Rfx1_Rfx4	ENSMUST00000010188.7|Zmynd10|ENSMUSG00000010044.7|zinc finger, MYND domain containing 10
mm10_v2_chr12_-_110889119_110889145	2.01538	Rfx3_Rfx1_Rfx4	ENSMUST00000043716.8|Cinp|ENSMUSG00000021276.9|cyclin-dependent kinase 2 interacting protein
mm10_v2_chr16_+_32099781_32099857	2.00934	Rfx3_Rfx1_Rfx4	ENSMUST00000115168.2|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr10_+_80295930_80296003	2.00062	Rfx3_Rfx1_Rfx4	ENSMUST00000105359.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr10_+_80299084_80299126	1.99665	Rfx3_Rfx1_Rfx4	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr8_-_27202542_27202557	1.97586	Rfx3_Rfx1_Rfx4	ENSMUST00000038174.6|Got1l1|ENSMUSG00000039720.6|glutamic-oxaloacetic transaminase 1-like 1
mm10_v2_chr12_-_21417526_21417588	1.9732	Rfx3_Rfx1_Rfx4	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr5_-_129008546_129008596	1.97032	Rfx3_Rfx1_Rfx4	ENSMUST00000031378.7|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr2_-_164857671_164857711	1.95507	Rfx3_Rfx1_Rfx4	ENSMUST00000059954.7|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr12_+_29528382_29528468	1.9538	Rfx3_Rfx1_Rfx4	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr12_-_21417591_21417637	1.949	Rfx3_Rfx1_Rfx4	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr7_+_16816299_16816361	1.9451	Rfx3_Rfx1_Rfx4	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr9_-_15627897_15627907	1.93467	Rfx3_Rfx1_Rfx4	ENSMUST00000045513.6|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67
mm10_v2_chr2_-_134644019_134644042	1.92839	Rfx3_Rfx1_Rfx4	ENSMUST00000110120.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr7_+_19176416_19176440	1.91728	Rfx3_Rfx1_Rfx4	ENSMUST00000117338.1|Eml2|ENSMUSG00000040811.9|echinoderm microtubule associated protein like 2
mm10_v2_chr2_+_32629467_32629514	1.91298	Rfx3_Rfx1_Rfx4	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr5_-_139460501_139460549	1.91018	Rfx3_Rfx1_Rfx4	ENSMUST00000066052.7|3110082I17Rik|ENSMUSG00000053553.7|RIKEN cDNA 3110082I17 gene
mm10_v2_chr6_+_83156401_83156451	1.89796	Rfx3_Rfx1_Rfx4	ENSMUST00000032106.4|1700003E16Rik|ENSMUSG00000030030.4|RIKEN cDNA 1700003E16 gene
mm10_v2_chr15_+_76671615_76671710	1.87534	Rfx3_Rfx1_Rfx4	ENSMUST00000037551.8|Ppp1r16a|ENSMUSG00000033819.9|protein phosphatase 1, regulatory (inhibitor) subunit 16A
mm10_v2_chr7_-_4684963_4684997	1.861	Rfx3_Rfx1_Rfx4	ENSMUST00000079970.4|Hspbp1|ENSMUSG00000063802.4|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm10_v2_chr3_-_89214329_89214372	1.85432	Rfx3_Rfx1_Rfx4	ENSMUST00000118964.2|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr8_+_85060055_85060135	1.85215	Rfx3_Rfx1_Rfx4	ENSMUST00000095220.3|Fbxw9|ENSMUSG00000008167.8|F-box and WD-40 domain protein 9
mm10_v2_chr2_-_91444622_91444726	1.84272	Rfx3_Rfx1_Rfx4	ENSMUST00000064652.7|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000102594.4|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000094835.2|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene
mm10_v2_chr6_-_124779686_124779742	1.84012	Rfx3_Rfx1_Rfx4	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr19_-_10556198_10556275	1.83888	Rfx3_Rfx1_Rfx4	ENSMUST00000025569.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr5_+_135632618_135632647	1.82646	Rfx3_Rfx1_Rfx4	ENSMUST00000043707.6|Rhbdd2|ENSMUSG00000039917.6|rhomboid domain containing 2
mm10_v2_chr4_+_117550326_117550409	1.8195	Rfx3_Rfx1_Rfx4	ENSMUST00000037127.8|Eri3|ENSMUSG00000033423.10|exoribonuclease 3
mm10_v2_chr15_-_79141197_79141268	1.81763	Rfx3_Rfx1_Rfx4	ENSMUST00000169604.1|1700088E04Rik|ENSMUSG00000033029.6|RIKEN cDNA 1700088E04 gene
mm10_v2_chr2_+_125136692_125136769	1.81125	Rfx3_Rfx1_Rfx4	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr15_-_98763195_98763220	1.81066	Rfx3_Rfx1_Rfx4	ENSMUST00000053183.9|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr7_-_13054665_13054764	1.80557	Rfx3_Rfx1_Rfx4	ENSMUST00000182515.1|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1 	ENSMUST00000069289.8|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1
mm10_v2_chr6_+_88084473_88084527	1.79986	Rfx3_Rfx1_Rfx4	ENSMUST00000032143.6|Rpn1|ENSMUSG00000030062.6|ribophorin I
mm10_v2_chr15_+_81663889_81663958	1.79955	Rfx3_Rfx1_Rfx4	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr15_-_76126538_76126556	1.79752	Rfx3_Rfx1_Rfx4	ENSMUST00000054022.5|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139 	ENSMUST00000089654.3|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139
mm10_v2_chr6_+_34780412_34780467	1.79726	Rfx3_Rfx1_Rfx4	ENSMUST00000115016.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115017.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3
mm10_v2_chr14_-_31001588_31001672	1.79282	Rfx3_Rfx1_Rfx4	ENSMUST00000162092.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae) 	ENSMUST00000160342.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm10_v2_chr2_+_164823001_164823040	1.78895	Rfx3_Rfx1_Rfx4	ENSMUST00000132282.1|Zswim1|ENSMUSG00000017764.2|zinc finger SWIM-type containing 1
mm10_v2_chr13_+_112987802_112987838	1.78346	Rfx3_Rfx1_Rfx4	ENSMUST00000038404.4|Ccno|ENSMUSG00000042417.4|cyclin O
mm10_v2_chr2_-_75981967_75981967	1.78094	Rfx3_Rfx1_Rfx4	ENSMUST00000099994.3|Ttc30a1|ENSMUSG00000075271.3|tetratricopeptide repeat domain 30A1
mm10_v2_chr7_+_126950518_126950584	1.77706	Rfx3_Rfx1_Rfx4	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr4_+_126058557_126058613	1.7604	Rfx3_Rfx1_Rfx4	ENSMUST00000035497.4|Oscp1|ENSMUSG00000042616.7|organic solute carrier partner 1
mm10_v2_chr19_-_41896132_41896155	1.75641	Rfx3_Rfx1_Rfx4	ENSMUST00000038677.3|Rrp12|ENSMUSG00000035049.3|ribosomal RNA processing 12 homolog (S. cerevisiae)
mm10_v2_chr17_-_34972124_34972158	1.75302	Rfx3_Rfx1_Rfx4	ENSMUST00000087328.2|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A 	ENSMUST00000179128.1|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A
mm10_v2_chr1_-_152766323_152766352	1.75109	Rfx3_Rfx1_Rfx4	ENSMUST00000111857.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr16_+_17646464_17646507	1.73704	Rfx3_Rfx1_Rfx4	ENSMUST00000056962.4|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A
mm10_v2_chr8_-_123212742_123212779	1.73583	Rfx3_Rfx1_Rfx4	ENSMUST00000000759.8|Chmp1a|ENSMUSG00000000743.8|charged multivesicular body protein 1A
mm10_v2_chr6_-_77979652_77979708	1.73264	Rfx3_Rfx1_Rfx4	ENSMUST00000161846.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000160894.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr17_-_57011271_57011326	1.73187	Rfx3_Rfx1_Rfx4	ENSMUST00000002733.6|Gtf2f1|ENSMUSG00000002658.9|general transcription factor IIF, polypeptide 1
mm10_v2_chr15_+_79141324_79141358	1.73167	Rfx3_Rfx1_Rfx4	ENSMUST00000040077.6|Polr2f|ENSMUSG00000033020.6|polymerase (RNA) II (DNA directed) polypeptide F
mm10_v2_chr10_+_122678764_122678811	1.72331	Rfx3_Rfx1_Rfx4	ENSMUST00000161487.1|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing) 	ENSMUST00000067918.5|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing)
mm10_v2_chrX_+_153359613_153359613	1.71523	Rfx3_Rfx1_Rfx4	ENSMUST00000039545.4|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr5_-_137046026_137046135	1.71398	Rfx3_Rfx1_Rfx4	ENSMUST00000144303.1|Ap1s1|ENSMUSG00000004849.8|adaptor protein complex AP-1, sigma 1 	ENSMUST00000111080.1|Ap1s1|ENSMUSG00000004849.8|adaptor protein complex AP-1, sigma 1
mm10_v2_chr2_+_164460945_164461018	1.70001	Rfx3_Rfx1_Rfx4	ENSMUST00000072452.4|Sys1|ENSMUSG00000045503.10|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm10_v2_chr2_+_21205719_21205787	1.69764	Rfx3_Rfx1_Rfx4	ENSMUST00000054591.3|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102952.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138965.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138914.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102951.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial)
mm10_v2_chr2_+_29788237_29788302	1.69763	Rfx3_Rfx1_Rfx4	ENSMUST00000028137.3|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast) 	ENSMUST00000148791.1|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast)
mm10_v2_chr1_+_165461037_165461037	1.69252	Rfx3_Rfx1_Rfx4	ENSMUST00000027853.5|Mpc2|ENSMUSG00000026568.5|mitochondrial pyruvate carrier 2
mm10_v2_chr16_+_32099904_32099973	1.68865	Rfx3_Rfx1_Rfx4	ENSMUST00000042869.6|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr6_+_55203381_55203459	1.67315	Rfx3_Rfx1_Rfx4	ENSMUST00000053094.7|Fam188b|ENSMUSG00000038022.9|family with sequence similarity 188, member B
mm10_v2_chr6_+_117906809_117906863	1.66996	Rfx3_Rfx1_Rfx4	ENSMUST00000177918.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000163168.2|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F
mm10_v2_chr5_+_30711564_30711586	1.66629	Rfx3_Rfx1_Rfx4	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr17_-_24650270_24650311	1.66525	Rfx3_Rfx1_Rfx4	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr7_-_25250720_25250761	1.66135	Rfx3_Rfx1_Rfx4	ENSMUST00000116343.2|Erf|ENSMUSG00000040857.9|Ets2 repressor factor 	ENSMUST00000045847.8|Erf|ENSMUSG00000040857.9|Ets2 repressor factor
mm10_v2_chr6_-_90810118_90810160	1.65697	Rfx3_Rfx1_Rfx4	ENSMUST00000101151.3|Iqsec1|ENSMUSG00000034312.7|IQ motif and Sec7 domain 1
mm10_v2_chr2_-_36049365_36049406	1.63341	Rfx3_Rfx1_Rfx4	ENSMUST00000070112.5|Ndufa8|ENSMUSG00000026895.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8
mm10_v2_chr19_-_4906598_4906632	1.63164	Rfx3_Rfx1_Rfx4	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr1_+_37299882_37299937	1.62964	Rfx3_Rfx1_Rfx4	ENSMUST00000136846.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000027287.4|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000132401.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I
mm10_v2_chr8_-_4259257_4259283	1.62156	Rfx3_Rfx1_Rfx4	ENSMUST00000053252.7|Ctxn1|ENSMUSG00000048644.7|cortexin 1
mm10_v2_chr9_+_108569885_108569943	1.61662	Rfx3_Rfx1_Rfx4	ENSMUST00000019183.8|Dalrd3|ENSMUSG00000019039.8|DALR anticodon binding domain containing 3
mm10_v2_chr7_+_6172482_6172531	1.59579	Rfx3_Rfx1_Rfx4	ENSMUST00000108567.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000054680.5|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000108566.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444
mm10_v2_chr2_+_167932327_167932379	1.5934	Rfx3_Rfx1_Rfx4	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr5_+_30814722_30814776	1.5912	Rfx3_Rfx1_Rfx4	ENSMUST00000114724.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr7_+_126950837_126950966	1.58795	Rfx3_Rfx1_Rfx4	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr10_+_74967164_74967203	1.57044	Rfx3_Rfx1_Rfx4	ENSMUST00000037813.4|Gnaz|ENSMUSG00000040009.5|guanine nucleotide binding protein, alpha z subunit
mm10_v2_chr16_+_3909032_3909106	1.57029	Rfx3_Rfx1_Rfx4	ENSMUST00000124849.1|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1
mm10_v2_chr1_+_64690443_64690467	1.56671	Rfx3_Rfx1_Rfx4	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr5_+_123252087_123252136	1.55393	Rfx3_Rfx1_Rfx4	ENSMUST00000121964.1|Wdr66|ENSMUSG00000029442.12|WD repeat domain 66
mm10_v2_chr12_+_73997749_73997817	1.55111	Rfx3_Rfx1_Rfx4	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr3_-_55055038_55055055	1.54957	Rfx3_Rfx1_Rfx4	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr3_+_124321031_124321113	1.54625	Rfx3_Rfx1_Rfx4	ENSMUST00000058994.4|Tram1l1|ENSMUSG00000044528.4|translocation associated membrane protein 1-like 1
mm10_v2_chr5_+_30814571_30814641	1.54433	Rfx3_Rfx1_Rfx4	ENSMUST00000031058.8|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr11_+_83302641_83302803	1.54397	Rfx3_Rfx1_Rfx4	ENSMUST00000176430.1|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit 	ENSMUST00000065692.7|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit
mm10_v2_chr2_+_166792525_166792536	1.54392	Rfx3_Rfx1_Rfx4	ENSMUST00000065753.1|Trp53rk|ENSMUSG00000042854.9|transformation related protein 53 regulating kinase
mm10_v2_chr1_-_172258410_172258438	1.53434	Rfx3_Rfx1_Rfx4	ENSMUST00000111243.1|Atp1a4|ENSMUSG00000007107.5|ATPase, Na+/K+ transporting, alpha 4 polypeptide
mm10_v2_chr7_-_109616548_109616616	1.51867	Rfx3_Rfx1_Rfx4	ENSMUST00000077909.1|St5|ENSMUSG00000031024.6|suppression of tumorigenicity 5 	ENSMUST00000084738.3|St5|ENSMUSG00000031024.6|suppression of tumorigenicity 5
mm10_v2_chr1_-_75180349_75180407	1.51815	Rfx3_Rfx1_Rfx4	ENSMUST00000027396.8|Abcb6|ENSMUSG00000026198.9|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm10_v2_chr2_-_121271315_121271322	1.51799	Rfx3_Rfx1_Rfx4	ENSMUST00000131245.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr17_+_71183545_71183570	1.51215	Rfx3_Rfx1_Rfx4	ENSMUST00000156570.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr7_-_44929410_44929521	1.50104	Rfx3_Rfx1_Rfx4	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chrX_+_136993281_136993308	1.49902	Rfx3_Rfx1_Rfx4	ENSMUST00000033804.4|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr7_-_99141068_99141149	1.49465	Rfx3_Rfx1_Rfx4	ENSMUST00000037968.8|Uvrag|ENSMUSG00000035354.8|UV radiation resistance associated gene
mm10_v2_chr10_-_42018363_42018436	1.48724	Rfx3_Rfx1_Rfx4	ENSMUST00000162405.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000095729.4|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000161081.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000160262.2|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2
mm10_v2_chr5_-_114823460_114823475	1.47182	Rfx3_Rfx1_Rfx4	ENSMUST00000140374.1|Gm20499|ENSMUSG00000092252.1|predicted gene 20499 	ENSMUST00000100850.4|2610524H06Rik|ENSMUSG00000092486.1|RIKEN cDNA 2610524H06 gene
mm10_v2_chr18_+_31609512_31609512	1.47	Rfx3_Rfx1_Rfx4	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr10_+_83722865_83722947	1.45779	Rfx3_Rfx1_Rfx4	ENSMUST00000150459.1|1500009L16Rik|ENSMUSG00000087651.2|RIKEN cDNA 1500009L16 gene
mm10_v2_chr5_+_30281377_30281447	1.45769	Rfx3_Rfx1_Rfx4	ENSMUST00000101448.3|Drc1|ENSMUSG00000073102.3|dynein regulatory complex subunit 1
mm10_v2_chr12_-_110682606_110682623	1.45322	Rfx3_Rfx1_Rfx4	ENSMUST00000070659.5|1700001K19Rik|ENSMUSG00000056508.5|RIKEN cDNA 1700001K19 gene
mm10_v2_chr7_+_126950687_126950729	1.45218	Rfx3_Rfx1_Rfx4	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr1_+_152766540_152766551	1.44727	Rfx3_Rfx1_Rfx4	ENSMUST00000077755.5|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5 	ENSMUST00000097536.4|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5
mm10_v2_chr9_-_22002599_22002640	1.43663	Rfx3_Rfx1_Rfx4	ENSMUST00000115336.2|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151 	ENSMUST00000044926.5|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151
mm10_v2_chr10_-_39133848_39133912	1.43291	Rfx3_Rfx1_Rfx4	ENSMUST00000134279.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000139743.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000149949.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000124941.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000125042.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000063204.2|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr11_-_29247208_29247409	1.43051	Rfx3_Rfx1_Rfx4	ENSMUST00000020754.3|Ccdc104|ENSMUSG00000020462.8|coiled-coil domain containing 104
mm10_v2_chr12_-_110840905_110840950	1.4257	Rfx3_Rfx1_Rfx4	ENSMUST00000177224.1|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000084974.4|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000070565.8|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30
mm10_v2_chr15_-_98762992_98763190	1.41388	Rfx3_Rfx1_Rfx4	ENSMUST00000156572.1|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr5_-_137530990_137531049	1.41202	Rfx3_Rfx1_Rfx4	ENSMUST00000132525.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr9_+_110476985_110476999	1.40497	Rfx3_Rfx1_Rfx4	ENSMUST00000084948.4|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000061155.6|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000140686.1|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000084952.5|Kif9|ENSMUSG00000032489.11|kinesin family member 9
mm10_v2_chr10_-_39133914_39133927	1.40084	Rfx3_Rfx1_Rfx4	ENSMUST00000135785.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr5_+_30711849_30711905	1.40067	Rfx3_Rfx1_Rfx4	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr3_+_68468162_68468209	1.38395	Rfx3_Rfx1_Rfx4	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr2_+_90904740_90904778	1.38206	Rfx3_Rfx1_Rfx4	ENSMUST00000111464.1|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4 	ENSMUST00000090682.3|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4
mm10_v2_chr5_+_130187158_130187166	1.37968	Rfx3_Rfx1_Rfx4	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr5_-_136986829_136986901	1.36701	Rfx3_Rfx1_Rfx4	ENSMUST00000034953.7|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1 	ENSMUST00000085941.5|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1
mm10_v2_chr12_+_113185877_113185937	1.36464	Rfx3_Rfx1_Rfx4	ENSMUST00000058491.6|Tmem121|ENSMUSG00000049036.6|transmembrane protein 121
mm10_v2_chrX_-_8132770_8132857	1.36384	Rfx3_Rfx1_Rfx4	ENSMUST00000130832.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000033506.6|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000115623.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000153839.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13
mm10_v2_chr7_-_118855602_118855695	1.35821	Rfx3_Rfx1_Rfx4	ENSMUST00000106549.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000126792.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr17_-_35979679_35979831	1.35064	Rfx3_Rfx1_Rfx4	ENSMUST00000173724.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000172900.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000174849.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3
mm10_v2_chr4_-_95052188_95052222	1.34973	Rfx3_Rfx1_Rfx4	ENSMUST00000107094.1|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr7_-_44375006_44375035	1.34266	Rfx3_Rfx1_Rfx4	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chr4_-_126753372_126753440	1.34166	Rfx3_Rfx1_Rfx4	ENSMUST00000030637.7|Ncdn|ENSMUSG00000028833.7|neurochondrin 	ENSMUST00000106116.1|Ncdn|ENSMUSG00000028833.7|neurochondrin
mm10_v2_chrX_-_51205773_51205839	1.34106	Rfx3_Rfx1_Rfx4	ENSMUST00000114875.1|Mbnl3|ENSMUSG00000036109.11|muscleblind-like 3 (Drosophila)
mm10_v2_chr2_-_90904827_90904940	1.34096	Rfx3_Rfx1_Rfx4	ENSMUST00000005647.3|Ndufs3|ENSMUSG00000005510.3|NADH dehydrogenase (ubiquinone) Fe-S protein 3
mm10_v2_chr1_+_93685574_93685694	1.33529	Rfx3_Rfx1_Rfx4	ENSMUST00000027499.6|Bok|ENSMUSG00000026278.8|BCL2-related ovarian killer protein
mm10_v2_chr3_-_105960099_105960099	1.33257	Rfx3_Rfx1_Rfx4	ENSMUST00000118209.1|Atp5f1|ENSMUSG00000000563.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm10_v2_chr4_-_152477433_152477549	1.30721	Rfx3_Rfx1_Rfx4	ENSMUST00000159186.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000162017.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000030768.2|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm10_v2_chr7_-_68749170_68749241	1.30111	Rfx3_Rfx1_Rfx4	ENSMUST00000118110.1|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4 	ENSMUST00000048068.7|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4
mm10_v2_chr15_-_75678732_75678805	1.29459	Rfx3_Rfx1_Rfx4	ENSMUST00000000958.8|Top1mt|ENSMUSG00000000934.8|DNA topoisomerase 1, mitochondrial
mm10_v2_chr4_+_41465134_41465159	1.29402	Rfx3_Rfx1_Rfx4	ENSMUST00000030154.6|Nudt2|ENSMUSG00000028443.6|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm10_v2_chr11_+_75999912_75999946	1.29181	Rfx3_Rfx1_Rfx4	ENSMUST00000066408.5|1700016K19Rik|ENSMUSG00000053783.5|RIKEN cDNA 1700016K19 gene
mm10_v2_chr2_-_121271341_121271397	1.28899	Rfx3_Rfx1_Rfx4	ENSMUST00000110647.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr11_+_114668524_114668626	1.28567	Rfx3_Rfx1_Rfx4	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr16_+_17646564_17646620	1.28124	Rfx3_Rfx1_Rfx4	ENSMUST00000182117.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182671.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182344.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A
mm10_v2_chr7_+_139213239_139213304	1.28108	Rfx3_Rfx1_Rfx4	ENSMUST00000106104.1|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr7_-_92637079_92637147	1.27399	Rfx3_Rfx1_Rfx4	ENSMUST00000056106.7|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42 	ENSMUST00000118157.1|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42
mm10_v2_chr15_+_59315030_59315087	1.27196	Rfx3_Rfx1_Rfx4	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr14_-_54253907_54253920	1.26787	Rfx3_Rfx1_Rfx4	ENSMUST00000128231.1|Dad1|ENSMUSG00000022174.8|defender against cell death 1
mm10_v2_chr17_+_85621017_85621031	1.26715	Rfx3_Rfx1_Rfx4	ENSMUST00000162695.2|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr9_-_60687459_60687672	1.26547	Rfx3_Rfx1_Rfx4	ENSMUST00000114032.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000166168.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000132366.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr17_+_34972687_34972705	1.25264	Rfx3_Rfx1_Rfx4	ENSMUST00000007248.3|Hspa1l|ENSMUSG00000007033.3|heat shock protein 1-like
mm10_v2_chr2_-_25580099_25580099	1.24852	Rfx3_Rfx1_Rfx4	ENSMUST00000114217.1|Gm996|ENSMUSG00000029419.7|predicted gene 996
mm10_v2_chr7_-_30232186_30232272	1.24375	Rfx3_Rfx1_Rfx4	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr18_-_35662180_35662195	1.23982	Rfx3_Rfx1_Rfx4	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr19_+_10577439_10577461	1.23817	Rfx3_Rfx1_Rfx4	ENSMUST00000168445.1|Cyb561a3|ENSMUSG00000034445.7|cytochrome b561 family, member A3
mm10_v2_chr7_+_19149722_19149844	1.23529	Rfx3_Rfx1_Rfx4	ENSMUST00000049294.2|Snrpd2|ENSMUSG00000040824.2|small nuclear ribonucleoprotein D2
mm10_v2_chr2_-_121271403_121271410	1.22775	Rfx3_Rfx1_Rfx4	ENSMUST00000110648.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr4_-_43653560_43653594	1.22113	Rfx3_Rfx1_Rfx4	ENSMUST00000107870.2|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr1_+_59119822_59119861	1.2208	Rfx3_Rfx1_Rfx4	ENSMUST00000180570.1|G730003C15Rik|ENSMUSG00000097573.1|RIKEN cDNA G730003C15 gene
mm10_v2_chr15_+_59315088_59315128	1.22019	Rfx3_Rfx1_Rfx4	ENSMUST00000100640.4|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr9_+_104569671_104569683	1.21691	Rfx3_Rfx1_Rfx4	ENSMUST00000057742.8|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr8_-_122611419_122611487	1.2149	Rfx3_Rfx1_Rfx4	ENSMUST00000015171.9|Galns|ENSMUSG00000015027.10|galactosamine (N-acetyl)-6-sulfate sulfatase
mm10_v2_chr11_+_108425192_108425304	1.21293	Rfx3_Rfx1_Rfx4	ENSMUST00000150863.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000061287.5|Cep112|ENSMUSG00000020728.11|centrosomal protein 112 	ENSMUST00000149683.2|Cep112|ENSMUSG00000020728.11|centrosomal protein 112
mm10_v2_chr6_-_90428401_90428480	1.20069	Rfx3_Rfx1_Rfx4	ENSMUST00000062750.5|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37 	ENSMUST00000165673.1|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37
mm10_v2_chr9_+_104569754_104569793	1.19979	Rfx3_Rfx1_Rfx4	ENSMUST00000077190.6|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr11_+_83302817_83302952	1.19404	Rfx3_Rfx1_Rfx4	ENSMUST00000142680.1|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit
mm10_v2_chr19_-_10304867_10304954	1.19016	Rfx3_Rfx1_Rfx4	ENSMUST00000039327.4|Dagla|ENSMUSG00000035735.4|diacylglycerol lipase, alpha
mm10_v2_chr17_+_80290206_80290279	1.18223	Rfx3_Rfx1_Rfx4	ENSMUST00000061703.9|Morn2|ENSMUSG00000045257.9|MORN repeat containing 2
mm10_v2_chr6_-_91473361_91473470	1.18189	Rfx3_Rfx1_Rfx4	ENSMUST00000040835.7|Chchd4|ENSMUSG00000034203.7|coiled-coil-helix-coiled-coil-helix domain containing 4
mm10_v2_chr11_+_72207537_72207620	1.18168	Rfx3_Rfx1_Rfx4	ENSMUST00000021158.3|Txndc17|ENSMUSG00000020803.3|thioredoxin domain containing 17
mm10_v2_chr12_+_72536342_72536396	1.17993	Rfx3_Rfx1_Rfx4	ENSMUST00000044352.6|Pcnxl4|ENSMUSG00000034501.6|pecanex-like 4 (Drosophila)
mm10_v2_chr14_-_26066961_26066961	1.17593	Rfx3_Rfx1_Rfx4	ENSMUST00000100818.5|Tmem254c|ENSMUSG00000072680.5|transmembrane protein 254c
mm10_v2_chr16_-_3908639_3908689	1.17372	Rfx3_Rfx1_Rfx4	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr11_-_48816936_48816961	1.17341	Rfx3_Rfx1_Rfx4	ENSMUST00000140800.1|Trim41|ENSMUSG00000040365.8|tripartite motif-containing 41
mm10_v2_chr11_-_77725281_77725294	1.16293	Rfx3_Rfx1_Rfx4	ENSMUST00000078623.4|Cryba1|ENSMUSG00000000724.10|crystallin, beta A1
mm10_v2_chr8_+_69832633_69832712	1.15734	Rfx3_Rfx1_Rfx4	ENSMUST00000131637.2|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4 	ENSMUST00000081503.6|Pbx4|ENSMUSG00000031860.11|pre B cell leukemia homeobox 4
mm10_v2_chr4_-_141790891_141790931	1.15528	Rfx3_Rfx1_Rfx4	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr5_+_136908130_136908174	1.14694	Rfx3_Rfx1_Rfx4	ENSMUST00000008131.8|Rabl5|ENSMUSG00000007987.8|RAB, member of RAS oncogene family-like 5
mm10_v2_chr11_-_72361837_72361899	1.14419	Rfx3_Rfx1_Rfx4	ENSMUST00000108503.2|Tekt1|ENSMUSG00000020799.10|tektin 1
mm10_v2_chr4_-_55532453_55532485	1.13067	Rfx3_Rfx1_Rfx4	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr19_+_6276725_6276792	1.12796	Rfx3_Rfx1_Rfx4	ENSMUST00000025684.3|Ehd1|ENSMUSG00000024772.9|EH-domain containing 1
mm10_v2_chr7_-_118855984_118856014	1.10842	Rfx3_Rfx1_Rfx4	ENSMUST00000116280.2|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000106550.3|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000063607.5|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr10_-_81060134_81060204	1.09955	Rfx3_Rfx1_Rfx4	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr14_-_25927250_25927250	1.09026	Rfx3_Rfx1_Rfx4	ENSMUST00000100811.5|Tmem254a|ENSMUSG00000072676.5|transmembrane protein 254a
mm10_v2_chr11_+_52004220_52004311	1.08892	Rfx3_Rfx1_Rfx4	ENSMUST00000121591.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063303.4|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109081.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109080.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109079.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109077.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109078.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063321.6|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000135076.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000120374.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3
mm10_v2_chrX_-_136741155_136741352	1.08888	Rfx3_Rfx1_Rfx4	ENSMUST00000166930.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113095.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000155207.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000080411.6|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000169418.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr11_+_69070790_69070856	1.08228	Rfx3_Rfx1_Rfx4	ENSMUST00000075980.5|Tmem107|ENSMUSG00000020895.8|transmembrane protein 107 	ENSMUST00000094081.4|Tmem107|ENSMUSG00000020895.8|transmembrane protein 107
mm10_v2_chr10_-_62578387_62578457	1.08098	Rfx3_Rfx1_Rfx4	ENSMUST00000162525.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000159704.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000162759.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000065887.7|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene
mm10_v2_chrX_+_72918557_72918612	1.07121	Rfx3_Rfx1_Rfx4	ENSMUST00000033715.4|Nsdhl|ENSMUSG00000031349.4|NAD(P) dependent steroid dehydrogenase-like
mm10_v2_chrX_-_140062550_140062583	1.06936	Rfx3_Rfx1_Rfx4	ENSMUST00000124075.1|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000101212.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000125678.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like
mm10_v2_chr14_-_56778301_56778352	1.05371	Rfx3_Rfx1_Rfx4	ENSMUST00000022507.5|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1 	ENSMUST00000163924.1|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1
mm10_v2_chr10_-_89732253_89732324	1.0508	Rfx3_Rfx1_Rfx4	ENSMUST00000020109.3|Actr6|ENSMUSG00000019948.3|ARP6 actin-related protein 6
mm10_v2_chr15_+_78428650_78428671	1.03865	Rfx3_Rfx1_Rfx4	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr9_+_108508005_108508076	1.0258	Rfx3_Rfx1_Rfx4	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr19_-_23652780_23652820	1.01974	Rfx3_Rfx1_Rfx4	ENSMUST00000035849.3|1700028P14Rik|ENSMUSG00000033053.3|RIKEN cDNA 1700028P14 gene
mm10_v2_chr3_+_98382438_98382520	1.0192	Rfx3_Rfx1_Rfx4	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr4_-_103114238_103114299	1.01651	Rfx3_Rfx1_Rfx4	ENSMUST00000036451.8|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78 	ENSMUST00000036557.8|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78
mm10_v2_chr3_+_98382538_98382553	1.01303	Rfx3_Rfx1_Rfx4	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr12_+_72441852_72441866	1.00554	Rfx3_Rfx1_Rfx4	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr11_-_119300070_119300089	1.00543	Rfx3_Rfx1_Rfx4	ENSMUST00000026667.8|Eif4a3|ENSMUSG00000025580.9|eukaryotic translation initiation factor 4A3
mm10_v2_chr15_-_83122756_83122801	1.00479	Rfx3_Rfx1_Rfx4	ENSMUST00000018184.3|Rrp7a|ENSMUSG00000018040.3|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm10_v2_chr12_-_21417356_21417436	1.00316	Rfx3_Rfx1_Rfx4	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr16_+_44394771_44394804	1.00022	Rfx3_Rfx1_Rfx4	ENSMUST00000099742.2|Wdr52|ENSMUSG00000071550.7|WD repeat domain 52
mm10_v2_chr8_+_72219726_72219785	0.998942	Rfx3_Rfx1_Rfx4	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr6_-_119330668_119330694	0.991292	Rfx3_Rfx1_Rfx4	ENSMUST00000112756.1|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr19_-_6942406_6942450	0.985395	Rfx3_Rfx1_Rfx4	ENSMUST00000099782.3|Gpr137|ENSMUSG00000024958.6|G protein-coupled receptor 137
mm10_v2_chr8_+_95055094_95055126	0.984977	Rfx3_Rfx1_Rfx4	ENSMUST00000058479.6|Ccdc135|ENSMUSG00000031786.6|coiled-coil domain containing 135
mm10_v2_chr4_-_117872520_117872560	0.978702	Rfx3_Rfx1_Rfx4	ENSMUST00000171052.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000166325.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000106422.2|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24
mm10_v2_chr4_-_41723129_41723179	0.975637	Rfx3_Rfx1_Rfx4	ENSMUST00000171641.1|Dctn3|ENSMUSG00000028447.5|dynactin 3 	ENSMUST00000030158.4|Dctn3|ENSMUSG00000028447.5|dynactin 3
mm10_v2_chr7_+_30231884_30231948	0.968981	Rfx3_Rfx1_Rfx4	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr3_-_146770218_146770261	0.965099	Rfx3_Rfx1_Rfx4	ENSMUST00000106137.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr6_-_77979515_77979622	0.963345	Rfx3_Rfx1_Rfx4	ENSMUST00000159626.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000075340.5|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000162273.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr12_+_110889231_110889305	0.959869	Rfx3_Rfx1_Rfx4	ENSMUST00000169597.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2 	ENSMUST00000165978.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2
mm10_v2_chr14_-_31001311_31001389	0.958658	Rfx3_Rfx1_Rfx4	ENSMUST00000161219.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae) 	ENSMUST00000182501.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm10_v2_chr6_-_102464667_102464667	0.951177	Rfx3_Rfx1_Rfx4	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr19_+_5041337_5041416	0.94837	Rfx3_Rfx1_Rfx4	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr9_-_14771004_14771044	0.944899	Rfx3_Rfx1_Rfx4	ENSMUST00000060330.3|1700012B09Rik|ENSMUSG00000031927.3|RIKEN cDNA 1700012B09 gene
mm10_v2_chr4_+_32983008_32983155	0.940455	Rfx3_Rfx1_Rfx4	ENSMUST00000098190.3|Rragd|ENSMUSG00000028278.8|Ras-related GTP binding D 	ENSMUST00000029946.7|Rragd|ENSMUSG00000028278.8|Ras-related GTP binding D
mm10_v2_chr18_+_36348653_36348728	0.932603	Rfx3_Rfx1_Rfx4	ENSMUST00000050584.3|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr18_+_36348739_36348779	0.927244	Rfx3_Rfx1_Rfx4	ENSMUST00000152804.2|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr10_-_117063764_117063814	0.922015	Rfx3_Rfx1_Rfx4	ENSMUST00000047672.7|Cct2|ENSMUSG00000034024.7|chaperonin containing Tcp1, subunit 2 (beta)
mm10_v2_chr3_-_57847478_57847610	0.919841	Rfx3_Rfx1_Rfx4	ENSMUST00000120289.1|Pfn2|ENSMUSG00000027805.10|profilin 2 	ENSMUST00000066882.8|Pfn2|ENSMUSG00000027805.10|profilin 2
mm10_v2_chr17_-_34118476_34118522	0.918946	Rfx3_Rfx1_Rfx4	ENSMUST00000095347.5|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr4_-_125065603_125065703	0.918425	Rfx3_Rfx1_Rfx4	ENSMUST00000036383.3|Dnali1|ENSMUSG00000042707.6|dynein, axonemal, light intermediate polypeptide 1
mm10_v2_chr10_+_86705811_86705878	0.911582	Rfx3_Rfx1_Rfx4	ENSMUST00000061458.7|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307 	ENSMUST00000075632.6|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307
mm10_v2_chr2_+_112239468_112239508	0.906652	Rfx3_Rfx1_Rfx4	ENSMUST00000028554.3|Lpcat4|ENSMUSG00000027134.4|lysophosphatidylcholine acyltransferase 4
mm10_v2_chr9_-_64341145_64341257	0.905848	Rfx3_Rfx1_Rfx4	ENSMUST00000120760.1|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like 	ENSMUST00000168844.2|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr9_+_65460926_65460983	0.90452	Rfx3_Rfx1_Rfx4	ENSMUST00000034955.6|Spg21|ENSMUSG00000032388.6|spastic paraplegia 21 homolog (human)
mm10_v2_chr7_-_6730412_6730431	0.902574	Rfx3_Rfx1_Rfx4	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr17_-_35979237_35979526	0.902544	Rfx3_Rfx1_Rfx4	ENSMUST00000165613.2|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000173872.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3
mm10_v2_chr1_+_90603425_90603511	0.883001	Rfx3_Rfx1_Rfx4	ENSMUST00000036153.5|Cops8|ENSMUSG00000034432.5|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm10_v2_chr11_-_101278927_101279114	0.877712	Rfx3_Rfx1_Rfx4	ENSMUST00000168089.1|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3 	ENSMUST00000017332.3|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3
mm10_v2_chr18_+_56707725_56707940	0.874533	Rfx3_Rfx1_Rfx4	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr11_+_88047302_88047373	0.868908	Rfx3_Rfx1_Rfx4	ENSMUST00000139129.2|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr11_-_60115226_60115237	0.867799	Rfx3_Rfx1_Rfx4	ENSMUST00000130746.1|4930412M03Rik|ENSMUSG00000051008.5|RIKEN cDNA 4930412M03 gene
mm10_v2_chr1_-_124045247_124045267	0.867269	Rfx3_Rfx1_Rfx4	ENSMUST00000112603.2|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr15_+_30172570_30172600	0.863113	Rfx3_Rfx1_Rfx4	ENSMUST00000081728.5|Ctnnd2|ENSMUSG00000022240.9|catenin (cadherin associated protein), delta 2
mm10_v2_chr2_+_152427639_152427699	0.859198	Rfx3_Rfx1_Rfx4	ENSMUST00000128737.1|6820408C15Rik|ENSMUSG00000032680.5|RIKEN cDNA 6820408C15 gene
mm10_v2_chr17_-_46247968_46248054	0.858182	Rfx3_Rfx1_Rfx4	ENSMUST00000142706.2|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C 	ENSMUST00000173349.1|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C 	ENSMUST00000087026.6|Polr1c|ENSMUSG00000067148.9|polymerase (RNA) I polypeptide C
mm10_v2_chr18_-_70530313_70530434	0.857392	Rfx3_Rfx1_Rfx4	ENSMUST00000043286.8|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr19_-_10457447_10457557	0.856711	Rfx3_Rfx1_Rfx4	ENSMUST00000171400.2|Lrrc10b|ENSMUSG00000090291.2|leucine rich repeat containing 10B
mm10_v2_chr9_-_8042785_8042882	0.842874	Rfx3_Rfx1_Rfx4	ENSMUST00000065291.1|9230110C19Rik|ENSMUSG00000053070.4|RIKEN cDNA 9230110C19 gene
mm10_v2_chr7_-_44748306_44748391	0.835409	Rfx3_Rfx1_Rfx4	ENSMUST00000118162.1|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473 	ENSMUST00000140599.2|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473 	ENSMUST00000120798.1|Zfp473|ENSMUSG00000048012.12|zinc finger protein 473
mm10_v2_chr6_-_136875794_136875811	0.829542	Rfx3_Rfx1_Rfx4	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr8_+_122611618_122611663	0.823715	Rfx3_Rfx1_Rfx4	ENSMUST00000015157.8|Trappc2l|ENSMUSG00000015013.8|trafficking protein particle complex 2-like
mm10_v2_chr12_+_69963452_69963474	0.822366	Rfx3_Rfx1_Rfx4	ENSMUST00000110560.1|Gm3086|ENSMUSG00000079076.1|predicted gene 3086
mm10_v2_chr17_+_8165501_8165540	0.820478	Rfx3_Rfx1_Rfx4	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr16_-_3907651_3907707	0.811205	Rfx3_Rfx1_Rfx4	ENSMUST00000177221.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene 	ENSMUST00000177323.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr11_+_119229092_119229131	0.808193	Rfx3_Rfx1_Rfx4	ENSMUST00000053440.7|Ccdc40|ENSMUSG00000039963.12|coiled-coil domain containing 40
mm10_v2_chr4_+_123904907_123904916	0.803284	Rfx3_Rfx1_Rfx4	ENSMUST00000106202.3|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr2_-_163645125_163645136	0.802541	Rfx3_Rfx1_Rfx4	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr6_-_119330723_119330800	0.79836	Rfx3_Rfx1_Rfx4	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr10_-_128645965_128645991	0.794569	Rfx3_Rfx1_Rfx4	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr15_+_78428564_78428636	0.793417	Rfx3_Rfx1_Rfx4	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr5_+_136919137_136919188	0.793106	Rfx3_Rfx1_Rfx4	ENSMUST00000181045.1|4933404O12Rik|ENSMUSG00000097908.1|RIKEN cDNA 4933404O12 gene
mm10_v2_chr4_+_123904832_123904851	0.792904	Rfx3_Rfx1_Rfx4	ENSMUST00000030400.7|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr1_-_124045523_124045571	0.789112	Rfx3_Rfx1_Rfx4	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr4_+_40722912_40723001	0.784471	Rfx3_Rfx1_Rfx4	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr11_-_119300004_119300034	0.773469	Rfx3_Rfx1_Rfx4	ENSMUST00000106253.1|Eif4a3|ENSMUSG00000025580.9|eukaryotic translation initiation factor 4A3
mm10_v2_chr12_+_72441933_72441970	0.773455	Rfx3_Rfx1_Rfx4	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr18_-_70530138_70530284	0.7728	Rfx3_Rfx1_Rfx4	ENSMUST00000161542.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota 	ENSMUST00000159389.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr7_+_140881898_140881968	0.768815	Rfx3_Rfx1_Rfx4	ENSMUST00000026560.7|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm10_v2_chr14_+_32085804_32085877	0.768214	Rfx3_Rfx1_Rfx4	ENSMUST00000170600.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000168986.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000169649.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1
mm10_v2_chr8_+_66386292_66386308	0.75278	Rfx3_Rfx1_Rfx4	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr7_+_30232032_30232050	0.749807	Rfx3_Rfx1_Rfx4	ENSMUST00000149654.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr11_+_109650921_109651003	0.749316	Rfx3_Rfx1_Rfx4	ENSMUST00000049527.6|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr10_-_80900749_80900969	0.746418	Rfx3_Rfx1_Rfx4	ENSMUST00000020440.6|Timm13|ENSMUSG00000020219.6|translocase of inner mitochondrial membrane 13
mm10_v2_chr6_+_113392417_113392497	0.745339	Rfx3_Rfx1_Rfx4	ENSMUST00000032414.4|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3 	ENSMUST00000038889.5|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3
mm10_v2_chr1_-_86359455_86359486	0.744195	Rfx3_Rfx1_Rfx4	ENSMUST00000027438.6|Ncl|ENSMUSG00000026234.6|nucleolin
mm10_v2_chr2_+_91922178_91922194	0.738037	Rfx3_Rfx1_Rfx4	ENSMUST00000170432.1|Chrm4|ENSMUSG00000040495.3|cholinergic receptor, muscarinic 4
mm10_v2_chr10_-_128645784_128645826	0.732205	Rfx3_Rfx1_Rfx4	ENSMUST00000065334.3|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr7_+_126487344_126487390	0.731826	Rfx3_Rfx1_Rfx4	ENSMUST00000098048.4|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial 	ENSMUST00000106392.3|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial
mm10_v2_chr16_+_78301458_78301496	0.725264	Rfx3_Rfx1_Rfx4	ENSMUST00000023572.7|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr4_-_103114555_103114578	0.723685	Rfx3_Rfx1_Rfx4	ENSMUST00000106868.3|Wdr78|ENSMUSG00000035126.13|WD repeat domain 78
mm10_v2_chr7_+_140882430_140882472	0.722772	Rfx3_Rfx1_Rfx4	ENSMUST00000164681.1|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 	ENSMUST00000163610.1|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm10_v2_chr14_-_55635602_55635718	0.717245	Rfx3_Rfx1_Rfx4	ENSMUST00000047131.9|Ipo4|ENSMUSG00000002319.9|importin 4
mm10_v2_chr19_-_10555724_10555761	0.70396	Rfx3_Rfx1_Rfx4	ENSMUST00000145210.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000123788.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000059582.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000154383.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr2_-_5063996_5064048	0.702165	Rfx3_Rfx1_Rfx4	ENSMUST00000114996.1|Optn|ENSMUSG00000026672.5|optineurin
mm10_v2_chr2_+_163658370_163658510	0.697312	Rfx3_Rfx1_Rfx4	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr4_-_43653542_43653557	0.696577	Rfx3_Rfx1_Rfx4	ENSMUST00000084646.4|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr13_-_108158584_108158630	0.69622	Rfx3_Rfx1_Rfx4	ENSMUST00000163558.1|Ndufaf2|ENSMUSG00000068184.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2
mm10_v2_chr8_+_119575235_119575340	0.695423	Rfx3_Rfx1_Rfx4	ENSMUST00000093100.2|Dnaaf1|ENSMUSG00000031831.6|dynein, axonemal assembly factor 1
mm10_v2_chr2_+_153161303_153161339	0.690458	Rfx3_Rfx1_Rfx4	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chr5_+_149439706_149439721	0.68977	Rfx3_Rfx1_Rfx4	ENSMUST00000031667.4|Tex26|ENSMUSG00000029660.7|testis expressed 26
mm10_v2_chr11_+_3895223_3895310	0.687619	Rfx3_Rfx1_Rfx4	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr4_-_121017201_121017261	0.686076	Rfx3_Rfx1_Rfx4	ENSMUST00000043200.7|Smap2|ENSMUSG00000032870.8|small ArfGAP 2
mm10_v2_chr8_-_46294592_46294671	0.685241	Rfx3_Rfx1_Rfx4	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr9_+_98563704_98563737	0.669128	Rfx3_Rfx1_Rfx4	ENSMUST00000035033.5|Copb2|ENSMUSG00000032458.5|coatomer protein complex, subunit beta 2 (beta prime)
mm10_v2_chr4_+_126096623_126096708	0.666759	Rfx3_Rfx1_Rfx4	ENSMUST00000055575.7|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000179323.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000151831.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10
mm10_v2_chr1_+_86154752_86154821	0.664387	Rfx3_Rfx1_Rfx4	ENSMUST00000113309.2|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000027434.8|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000131412.1|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9
mm10_v2_chr7_-_140882274_140882330	0.663882	Rfx3_Rfx1_Rfx4	ENSMUST00000026559.7|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr4_-_149426603_149426749	0.659079	Rfx3_Rfx1_Rfx4	ENSMUST00000103212.3|Ube4b|ENSMUSG00000028960.12|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm10_v2_chr18_+_35965088_35965110	0.657029	Rfx3_Rfx1_Rfx4	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chrX_+_48623737_48623790	0.653553	Rfx3_Rfx1_Rfx4	ENSMUST00000114936.1|Slc25a14|ENSMUSG00000031105.10|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm10_v2_chrX_+_151198078_151198140	0.648799	Rfx3_Rfx1_Rfx4	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chrX_+_134601271_134601286	0.647106	Rfx3_Rfx1_Rfx4	ENSMUST00000050331.6|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000059297.5|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr9_+_44398176_44398176	0.645721	Rfx3_Rfx1_Rfx4	ENSMUST00000165839.1|Slc37a4|ENSMUSG00000032114.8|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm10_v2_chr14_+_11227511_11227552	0.641803	Rfx3_Rfx1_Rfx4	ENSMUST00000080237.3|Rpl21-ps4|ENSMUSG00000072714.1|ribosomal protein L21, pseudogene 4
mm10_v2_chr8_+_123332676_123332740	0.641738	Rfx3_Rfx1_Rfx4	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr11_+_109650574_109650579	0.637251	Rfx3_Rfx1_Rfx4	ENSMUST00000106676.1|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr11_-_103267405_103267472	0.635488	Rfx3_Rfx1_Rfx4	ENSMUST00000021324.2|Map3k14|ENSMUSG00000020941.7|mitogen-activated protein kinase kinase kinase 14
mm10_v2_chr19_+_43689672_43689695	0.629053	Rfx3_Rfx1_Rfx4	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr17_+_33555719_33555796	0.62838	Rfx3_Rfx1_Rfx4	ENSMUST00000087605.5|Myo1f|ENSMUSG00000024300.10|myosin IF 	ENSMUST00000174695.1|Myo1f|ENSMUSG00000024300.10|myosin IF
mm10_v2_chr19_+_6061176_6061235	0.626566	Rfx3_Rfx1_Rfx4	ENSMUST00000162726.3|Znhit2|ENSMUSG00000075227.5|zinc finger, HIT domain containing 2
mm10_v2_chr9_-_64341288_64341311	0.617369	Rfx3_Rfx1_Rfx4	ENSMUST00000068367.7|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr4_+_134102581_134102618	0.611748	Rfx3_Rfx1_Rfx4	ENSMUST00000074690.4|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000070246.2|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000156750.1|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11
mm10_v2_chr4_+_118620799_118620899	0.611136	Rfx3_Rfx1_Rfx4	ENSMUST00000030501.8|Ebna1bp2|ENSMUSG00000028729.9|EBNA1 binding protein 2
mm10_v2_chr18_+_52465676_52465710	0.606664	Rfx3_Rfx1_Rfx4	ENSMUST00000025406.7|Srfbp1|ENSMUSG00000024528.7|serum response factor binding protein 1
mm10_v2_chr18_+_48045329_48045348	0.600471	Rfx3_Rfx1_Rfx4	ENSMUST00000076155.4|Gm5506|ENSMUSG00000059040.4|predicted gene 5506
mm10_v2_chr16_+_32419696_32419753	0.600185	Rfx3_Rfx1_Rfx4	ENSMUST00000014220.8|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2 	ENSMUST00000080316.7|Tctex1d2|ENSMUSG00000014075.9|Tctex1 domain containing 2
mm10_v2_chr4_-_95052170_95052181	0.599865	Rfx3_Rfx1_Rfx4	ENSMUST00000058555.2|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr8_-_94918012_94918098	0.597311	Rfx3_Rfx1_Rfx4	ENSMUST00000077955.5|Ccdc102a|ENSMUSG00000063605.5|coiled-coil domain containing 102A
mm10_v2_chr16_-_59639124_59639191	0.59492	Rfx3_Rfx1_Rfx4	ENSMUST00000149797.1|Arl6|ENSMUSG00000022722.12|ADP-ribosylation factor-like 6 	ENSMUST00000023405.9|Arl6|ENSMUSG00000022722.12|ADP-ribosylation factor-like 6
mm10_v2_chr9_-_110117303_110117353	0.59388	Rfx3_Rfx1_Rfx4	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr1_+_75521521_75521602	0.592538	Rfx3_Rfx1_Rfx4	ENSMUST00000027414.9|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein 	ENSMUST00000113553.1|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein
mm10_v2_chr19_+_6942501_6942584	0.591399	Rfx3_Rfx1_Rfx4	ENSMUST00000113423.3|Bad|ENSMUSG00000024959.7|BCL2-associated agonist of cell death
mm10_v2_chr7_+_122067164_122067216	0.590737	Rfx3_Rfx1_Rfx4	ENSMUST00000033158.4|Ubfd1|ENSMUSG00000030870.6|ubiquitin family domain containing 1
mm10_v2_chrX_+_134601179_134601266	0.587395	Rfx3_Rfx1_Rfx4	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr17_+_88530113_88530142	0.586757	Rfx3_Rfx1_Rfx4	ENSMUST00000038551.6|Ppp1r21|ENSMUSG00000034709.7|protein phosphatase 1, regulatory subunit 21
mm10_v2_chr10_+_39133981_39134031	0.583257	Rfx3_Rfx1_Rfx4	ENSMUST00000019991.7|Tube1|ENSMUSG00000019845.7|epsilon-tubulin 1
mm10_v2_chr15_-_84065329_84065364	0.580064	Rfx3_Rfx1_Rfx4	ENSMUST00000156187.1|Efcab6|ENSMUSG00000022441.11|EF-hand calcium binding domain 6
mm10_v2_chr18_+_63708689_63708730	0.577089	Rfx3_Rfx1_Rfx4	ENSMUST00000072726.5|Wdr7|ENSMUSG00000040560.9|WD repeat domain 7
mm10_v2_chr18_+_53245618_53245662	0.57607	Rfx3_Rfx1_Rfx4	ENSMUST00000165032.1|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr5_-_107987003_107987085	0.567352	Rfx3_Rfx1_Rfx4	ENSMUST00000145239.1|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A 	ENSMUST00000031198.4|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A
mm10_v2_chr8_-_69890967_69890967	0.555797	Rfx3_Rfx1_Rfx4	ENSMUST00000152938.1|Yjefn3|ENSMUSG00000048967.9|YjeF N-terminal domain containing 3
mm10_v2_chr17_+_56584973_56585059	0.55224	Rfx3_Rfx1_Rfx4	ENSMUST00000182533.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000182800.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000095224.4|Safb|ENSMUSG00000071054.6|scaffold attachment factor B
mm10_v2_chr11_+_90638127_90638207	0.552235	Rfx3_Rfx1_Rfx4	ENSMUST00000020851.8|Cox11|ENSMUSG00000020544.8|cytochrome c oxidase assembly protein 11
mm10_v2_chr8_-_40308331_40308331	0.550532	Rfx3_Rfx1_Rfx4	ENSMUST00000118639.1|Fgf20|ENSMUSG00000031603.8|fibroblast growth factor 20
mm10_v2_chr12_+_21417872_21417911	0.543705	Rfx3_Rfx1_Rfx4	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr7_-_118856254_118856373	0.542142	Rfx3_Rfx1_Rfx4	ENSMUST00000033277.7|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr10_+_42860348_42860377	0.541529	Rfx3_Rfx1_Rfx4	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr10_+_13008442_13008519	0.539264	Rfx3_Rfx1_Rfx4	ENSMUST00000105139.3|Sf3b5|ENSMUSG00000078348.3|splicing factor 3b, subunit 5
mm10_v2_chrX_-_122397351_122397425	0.535455	Rfx3_Rfx1_Rfx4	ENSMUST00000079490.4|Nap1l3|ENSMUSG00000055733.5|nucleosome assembly protein 1-like 3
mm10_v2_chr9_+_107563246_107563285	0.532802	Rfx3_Rfx1_Rfx4	ENSMUST00000010198.3|Tusc2|ENSMUSG00000010054.3|tumor suppressor candidate 2
mm10_v2_chr5_+_122372451_122372513	0.532074	Rfx3_Rfx1_Rfx4	ENSMUST00000031420.4|Gpn3|ENSMUSG00000029464.4|GPN-loop GTPase 3
mm10_v2_chr18_+_35965036_35965087	0.526738	Rfx3_Rfx1_Rfx4	ENSMUST00000176873.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2 	ENSMUST00000177432.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr10_+_110745433_110745572	0.524184	Rfx3_Rfx1_Rfx4	ENSMUST00000174857.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000073781.5|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173471.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7 	ENSMUST00000173634.1|E2f7|ENSMUSG00000020185.10|E2F transcription factor 7
mm10_v2_chr4_-_133545906_133546011	0.521896	Rfx3_Rfx1_Rfx4	ENSMUST00000030665.6|Nudc|ENSMUSG00000028851.6|nuclear distribution gene C homolog (Aspergillus)
mm10_v2_chr7_+_30232310_30232350	0.521779	Rfx3_Rfx1_Rfx4	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr17_-_36951636_36951741	0.521161	Rfx3_Rfx1_Rfx4	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr7_+_101321079_101321134	0.520837	Rfx3_Rfx1_Rfx4	ENSMUST00000032927.7|Stard10|ENSMUSG00000030688.8|START domain containing 10
mm10_v2_chr10_+_86302854_86302854	0.520347	Rfx3_Rfx1_Rfx4	ENSMUST00000132307.1|Timp3|ENSMUSG00000020044.7|tissue inhibitor of metalloproteinase 3
mm10_v2_chr11_-_120467414_120467600	0.520151	Rfx3_Rfx1_Rfx4	ENSMUST00000076921.6|Arl16|ENSMUSG00000057594.6|ADP-ribosylation factor-like 16
mm10_v2_chr16_+_78301673_78301760	0.517602	Rfx3_Rfx1_Rfx4	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr19_+_6363671_6363704	0.508121	Rfx3_Rfx1_Rfx4	ENSMUST00000131252.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr15_+_31276491_31276491	0.493447	Rfx3_Rfx1_Rfx4	ENSMUST00000068987.5|Fam136b-ps|ENSMUSG00000055416.5|family with sequence similarity 136, member B, pseudogene
mm10_v2_chr4_+_152478142_152478183	0.49279	Rfx3_Rfx1_Rfx4	ENSMUST00000081393.3|Nphp4|ENSMUSG00000039577.11|nephronophthisis 4 (juvenile) homolog (human)
mm10_v2_chr11_-_120991305_120991339	0.492207	Rfx3_Rfx1_Rfx4	ENSMUST00000018274.3|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr14_-_60197173_60197185	0.491156	Rfx3_Rfx1_Rfx4	ENSMUST00000131670.1|Atp8a2|ENSMUSG00000021983.9|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm10_v2_chr11_-_78536235_78536332	0.48974	Rfx3_Rfx1_Rfx4	ENSMUST00000017759.2|Tnfaip1|ENSMUSG00000017615.6|tumor necrosis factor, alpha-induced protein 1 (endothelial) 	ENSMUST00000108277.2|Tnfaip1|ENSMUSG00000017615.6|tumor necrosis factor, alpha-induced protein 1 (endothelial)
mm10_v2_chrX_+_7884022_7884055	0.488094	Rfx3_Rfx1_Rfx4	ENSMUST00000115660.4|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr15_+_79659196_79659267	0.485913	Rfx3_Rfx1_Rfx4	ENSMUST00000023064.7|Cby1|ENSMUSG00000022428.7|chibby homolog 1 (Drosophila)
mm10_v2_chr16_-_91728599_91728637	0.485541	Rfx3_Rfx1_Rfx4	ENSMUST00000122254.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr19_+_6363896_6363941	0.484882	Rfx3_Rfx1_Rfx4	ENSMUST00000113487.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr4_-_155669171_155669231	0.479383	Rfx3_Rfx1_Rfx4	ENSMUST00000103176.3|Mib2|ENSMUSG00000029060.11|mindbomb homolog 2 (Drosophila)
mm10_v2_chr6_+_91473695_91473787	0.474452	Rfx3_Rfx1_Rfx4	ENSMUST00000032183.4|Tmem43|ENSMUSG00000030095.4|transmembrane protein 43
mm10_v2_chr17_-_46144156_46144218	0.47272	Rfx3_Rfx1_Rfx4	ENSMUST00000024762.2|Rsph9|ENSMUSG00000023966.2|radial spoke head 9 homolog (Chlamydomonas)
mm10_v2_chr7_+_19076242_19076273	0.470648	Rfx3_Rfx1_Rfx4	ENSMUST00000032570.7|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif 	ENSMUST00000108479.1|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif
mm10_v2_chr11_+_70030023_70030083	0.468993	Rfx3_Rfx1_Rfx4	ENSMUST00000143920.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr6_+_83185946_83186151	0.464979	Rfx3_Rfx1_Rfx4	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr15_-_36794498_36794547	0.454005	Rfx3_Rfx1_Rfx4	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr17_+_33955902_33955926	0.451907	Rfx3_Rfx1_Rfx4	ENSMUST00000173196.2|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast)
mm10_v2_chrX_+_7884244_7884313	0.451708	Rfx3_Rfx1_Rfx4	ENSMUST00000115663.3|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr9_-_59353430_59353508	0.451269	Rfx3_Rfx1_Rfx4	ENSMUST00000026265.6|Bbs4|ENSMUSG00000025235.7|Bardet-Biedl syndrome 4 (human)
mm10_v2_chr19_+_8840519_8840549	0.449895	Rfx3_Rfx1_Rfx4	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chr4_-_135573623_135573643	0.447695	Rfx3_Rfx1_Rfx4	ENSMUST00000105855.1|Grhl3|ENSMUSG00000037188.7|grainyhead-like 3 (Drosophila)
mm10_v2_chr2_+_69647208_69647272	0.447685	Rfx3_Rfx1_Rfx4	ENSMUST00000074963.2|Bbs5|ENSMUSG00000063145.4|Bardet-Biedl syndrome 5 (human) 	ENSMUST00000112286.2|Bbs5|ENSMUSG00000063145.4|Bardet-Biedl syndrome 5 (human)
mm10_v2_chr3_-_116508035_116508070	0.444999	Rfx3_Rfx1_Rfx4	ENSMUST00000153005.1|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr16_-_91069142_91069159	0.443549	Rfx3_Rfx1_Rfx4	ENSMUST00000035689.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene 	ENSMUST00000114076.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene
mm10_v2_chr2_-_75938407_75938462	0.439941	Rfx3_Rfx1_Rfx4	ENSMUST00000099996.3|Ttc30b|ENSMUSG00000075273.3|tetratricopeptide repeat domain 30B
mm10_v2_chr9_+_99575776_99575829	0.437598	Rfx3_Rfx1_Rfx4	ENSMUST00000066650.5|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae) 	ENSMUST00000148987.1|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae)
mm10_v2_chr17_+_33955812_33955901	0.437043	Rfx3_Rfx1_Rfx4	ENSMUST00000025178.9|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast) 	ENSMUST00000114330.2|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast)
mm10_v2_chr11_+_46235460_46235531	0.435061	Rfx3_Rfx1_Rfx4	ENSMUST00000060185.2|Fndc9|ENSMUSG00000048721.2|fibronectin type III domain containing 9
mm10_v2_chr10_+_58497918_58497970	0.430871	Rfx3_Rfx1_Rfx4	ENSMUST00000036576.8|Ccdc138|ENSMUSG00000038010.8|coiled-coil domain containing 138
mm10_v2_chr11_+_78536355_78536368	0.421768	Rfx3_Rfx1_Rfx4	ENSMUST00000128788.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr2_+_126152141_126152212	0.420768	Rfx3_Rfx1_Rfx4	ENSMUST00000170908.1|Dtwd1|ENSMUSG00000023330.6|DTW domain containing 1
mm10_v2_chr15_+_75993756_75993832	0.419266	Rfx3_Rfx1_Rfx4	ENSMUST00000089669.4|Mapk15|ENSMUSG00000063704.6|mitogen-activated protein kinase 15
mm10_v2_chr2_-_131160006_131160081	0.414138	Rfx3_Rfx1_Rfx4	ENSMUST00000103188.3|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000133602.1|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000028800.5|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene
mm10_v2_chr2_-_30178422_30178473	0.409422	Rfx3_Rfx1_Rfx4	ENSMUST00000100220.4|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed 	ENSMUST00000179795.1|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed
mm10_v2_chrX_+_7884321_7884378	0.407816	Rfx3_Rfx1_Rfx4	ENSMUST00000096514.3|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2 	ENSMUST00000123277.1|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr8_-_85299483_85299535	0.406453	Rfx3_Rfx1_Rfx4	ENSMUST00000034131.8|Vps35|ENSMUSG00000031696.8|vacuolar protein sorting 35
mm10_v2_chr4_-_56802265_56802331	0.406006	Rfx3_Rfx1_Rfx4	ENSMUST00000030140.2|Ikbkap|ENSMUSG00000028431.5|inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein
mm10_v2_chr14_-_41006882_41006976	0.405934	Rfx3_Rfx1_Rfx4	ENSMUST00000152837.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A 	ENSMUST00000134715.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A
mm10_v2_chr10_+_20952547_20952593	0.405831	Rfx3_Rfx1_Rfx4	ENSMUST00000105525.4|Ahi1|ENSMUSG00000019986.10|Abelson helper integration site 1
mm10_v2_chr6_-_33060172_33060252	0.398357	Rfx3_Rfx1_Rfx4	ENSMUST00000115091.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3 	ENSMUST00000127666.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr4_+_62408770_62408865	0.397662	Rfx3_Rfx1_Rfx4	ENSMUST00000084524.3|Prpf4|ENSMUSG00000066148.3|PRP4 pre-mRNA processing factor 4 homolog (yeast)
mm10_v2_chr1_+_156366037_156366044	0.394813	Rfx3_Rfx1_Rfx4	ENSMUST00000102782.3|Gm2000|ENSMUSG00000078193.2|predicted gene 2000
mm10_v2_chr7_-_80901220_80901269	0.39459	Rfx3_Rfx1_Rfx4	ENSMUST00000146402.1|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73 	ENSMUST00000026816.8|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73
mm10_v2_chr9_-_122950960_122951006	0.391612	Rfx3_Rfx1_Rfx4	ENSMUST00000035154.3|1110059G10Rik|ENSMUSG00000032551.6|RIKEN cDNA 1110059G10 gene
mm10_v2_chr7_-_31054815_31054853	0.389214	Rfx3_Rfx1_Rfx4	ENSMUST00000071697.4|Fxyd1|ENSMUSG00000036570.8|FXYD domain-containing ion transport regulator 1 	ENSMUST00000108110.3|Fxyd1|ENSMUSG00000036570.8|FXYD domain-containing ion transport regulator 1
mm10_v2_chr1_+_69826986_69827003	0.388956	Rfx3_Rfx1_Rfx4	ENSMUST00000065425.5|Spag16|ENSMUSG00000053153.8|sperm associated antigen 16 	ENSMUST00000113940.2|Spag16|ENSMUSG00000053153.8|sperm associated antigen 16
mm10_v2_chr4_+_40722461_40722512	0.379961	Rfx3_Rfx1_Rfx4	ENSMUST00000030118.3|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr17_+_35979851_35979924	0.379889	Rfx3_Rfx1_Rfx4	ENSMUST00000087200.3|Gnl1|ENSMUSG00000024429.9|guanine nucleotide binding protein-like 1
mm10_v2_chr6_-_29609811_29609887	0.378504	Rfx3_Rfx1_Rfx4	ENSMUST00000012679.8|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr13_-_24937585_24937691	0.377454	Rfx3_Rfx1_Rfx4	ENSMUST00000037615.6|Aldh5a1|ENSMUSG00000035936.6|aldhehyde dehydrogenase family 5, subfamily A1
mm10_v2_chr18_+_53245736_53245786	0.376634	Rfx3_Rfx1_Rfx4	ENSMUST00000025417.8|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr9_+_44072196_44072211	0.375303	Rfx3_Rfx1_Rfx4	ENSMUST00000176671.1|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr5_+_38039224_38039299	0.374079	Rfx3_Rfx1_Rfx4	ENSMUST00000031008.6|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000042146.8|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000154929.1|Stx18|ENSMUSG00000029125.8|syntaxin 18
mm10_v2_chr3_+_105959369_105959427	0.372172	Rfx3_Rfx1_Rfx4	ENSMUST00000010278.5|Wdr77|ENSMUSG00000000561.8|WD repeat domain 77
mm10_v2_chr2_-_75978164_75978206	0.370772	Rfx3_Rfx1_Rfx4	ENSMUST00000099995.3|Ttc30a2|ENSMUSG00000075272.3|tetratricopeptide repeat domain 30A2
mm10_v2_chr13_+_108158723_108158754	0.370459	Rfx3_Rfx1_Rfx4	ENSMUST00000054835.8|Ercc8|ENSMUSG00000021694.12|excision repaiross-complementing rodent repair deficiency, complementation group 8 	ENSMUST00000120672.1|Ercc8|ENSMUSG00000021694.12|excision repaiross-complementing rodent repair deficiency, complementation group 8
mm10_v2_chr6_-_33060256_33060267	0.368829	Rfx3_Rfx1_Rfx4	ENSMUST00000066379.4|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr19_+_10001669_10001703	0.364999	Rfx3_Rfx1_Rfx4	ENSMUST00000121418.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1
mm10_v2_chr9_-_15627910_15627933	0.363024	Rfx3_Rfx1_Rfx4	ENSMUST00000152377.1|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67 	ENSMUST00000115593.3|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67
mm10_v2_chr7_-_125491586_125491596	0.361785	Rfx3_Rfx1_Rfx4	ENSMUST00000033006.7|Nsmce1|ENSMUSG00000030750.7|non-SMC element 1 homolog (S. cerevisiae)
mm10_v2_chr8_-_92356103_92356120	0.358135	Rfx3_Rfx1_Rfx4	ENSMUST00000034183.3|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr11_+_88047693_88047727	0.357743	Rfx3_Rfx1_Rfx4	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr17_+_28177339_28177449	0.35611	Rfx3_Rfx1_Rfx4	ENSMUST00000073534.2|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523 	ENSMUST00000002318.1|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523
mm10_v2_chr16_-_33056174_33056218	0.349862	Rfx3_Rfx1_Rfx4	ENSMUST00000115100.1|Iqcg|ENSMUSG00000035578.9|IQ motif containing G 	ENSMUST00000040309.8|Iqcg|ENSMUSG00000035578.9|IQ motif containing G
mm10_v2_chr7_-_125491397_125491413	0.347162	Rfx3_Rfx1_Rfx4	ENSMUST00000138616.1|Nsmce1|ENSMUSG00000030750.7|non-SMC element 1 homolog (S. cerevisiae)
mm10_v2_chr17_+_35241838_35241870	0.343833	Rfx3_Rfx1_Rfx4	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr9_+_95637601_95637632	0.342809	Rfx3_Rfx1_Rfx4	ENSMUST00000015498.8|Pcolce2|ENSMUSG00000015354.8|procollagen C-endopeptidase enhancer 2
mm10_v2_chr9_-_122950922_122950953	0.342188	Rfx3_Rfx1_Rfx4	ENSMUST00000118422.1|1110059G10Rik|ENSMUSG00000032551.6|RIKEN cDNA 1110059G10 gene
mm10_v2_chr10_+_81606303_81606303	0.339744	Rfx3_Rfx1_Rfx4	ENSMUST00000119492.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr5_-_92675253_92675287	0.337465	Rfx3_Rfx1_Rfx4	ENSMUST00000151180.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158 	ENSMUST00000150359.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158
mm10_v2_chr2_+_72297895_72297912	0.332242	Rfx3_Rfx1_Rfx4	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr17_-_56609689_56609771	0.330985	Rfx3_Rfx1_Rfx4	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chr17_+_56717759_56717819	0.33012	Rfx3_Rfx1_Rfx4	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr11_-_3895085_3895104	0.326587	Rfx3_Rfx1_Rfx4	ENSMUST00000020712.4|4921536K21Rik|ENSMUSG00000020434.4|RIKEN cDNA 4921536K21 gene
mm10_v2_chr11_+_97801917_97801998	0.324597	Rfx3_Rfx1_Rfx4	ENSMUST00000127033.2|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr16_-_91728701_91728802	0.324	Rfx3_Rfx1_Rfx4	ENSMUST00000114023.2|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1 	ENSMUST00000117644.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr11_-_100619576_100619596	0.321283	Rfx3_Rfx1_Rfx4	ENSMUST00000155152.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr17_-_36951338_36951425	0.319616	Rfx3_Rfx1_Rfx4	ENSMUST00000173540.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr2_+_110017806_110017873	0.318369	Rfx3_Rfx1_Rfx4	ENSMUST00000028580.5|Ccdc34|ENSMUSG00000027160.10|coiled-coil domain containing 34
mm10_v2_chr9_-_51008936_51009080	0.317072	Rfx3_Rfx1_Rfx4	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chr7_+_4740137_4740175	0.3163	Rfx3_Rfx1_Rfx4	ENSMUST00000130215.1|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila) 	ENSMUST00000108582.3|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr9_+_22003035_22003046	0.314624	Rfx3_Rfx1_Rfx4	ENSMUST00000115331.2|Prkcsh|ENSMUSG00000003402.7|protein kinase C substrate 80K-H 	ENSMUST00000003493.7|Prkcsh|ENSMUSG00000003402.7|protein kinase C substrate 80K-H
mm10_v2_chr7_-_4532419_4532470	0.312918	Rfx3_Rfx1_Rfx4	ENSMUST00000094897.4|Dnaaf3|ENSMUSG00000055809.7|dynein, axonemal assembly factor 3
mm10_v2_chr10_-_39899238_39899238	0.312167	Rfx3_Rfx1_Rfx4	ENSMUST00000178563.1|AA474331|ENSMUSG00000096687.1|expressed sequence AA474331
mm10_v2_chr3_-_116508071_116508208	0.3108	Rfx3_Rfx1_Rfx4	ENSMUST00000000348.8|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr16_-_4523056_4523075	0.309818	Rfx3_Rfx1_Rfx4	ENSMUST00000090500.3|Srl|ENSMUSG00000022519.7|sarcalumenin 	ENSMUST00000023161.7|Srl|ENSMUSG00000022519.7|sarcalumenin
mm10_v2_chr2_-_140066661_140066805	0.305257	Rfx3_Rfx1_Rfx4	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr7_+_4740111_4740120	0.304795	Rfx3_Rfx1_Rfx4	ENSMUST00000098853.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chr8_+_20567716_20567716	0.303025	Rfx3_Rfx1_Rfx4	ENSMUST00000178995.1|Gm21092|ENSMUSG00000095403.1|predicted gene, 21092
mm10_v2_chr9_-_59486610_59486621	0.302738	Rfx3_Rfx1_Rfx4	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr12_+_105032638_105032705	0.301224	Rfx3_Rfx1_Rfx4	ENSMUST00000021522.3|Glrx5|ENSMUSG00000021102.3|glutaredoxin 5 homolog (S. cerevisiae)
mm10_v2_chr8_+_45975514_45975558	0.294306	Rfx3_Rfx1_Rfx4	ENSMUST00000034051.6|Ufsp2|ENSMUSG00000031634.6|UFM1-specific peptidase 2
mm10_v2_chr9_-_110117379_110117445	0.293934	Rfx3_Rfx1_Rfx4	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr14_-_78536762_78536851	0.292178	Rfx3_Rfx1_Rfx4	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr8_+_85299632_85299667	0.288095	Rfx3_Rfx1_Rfx4	ENSMUST00000034132.5|Orc6|ENSMUSG00000031697.5|origin recognition complex, subunit 6 	ENSMUST00000170141.1|Orc6|ENSMUSG00000031697.5|origin recognition complex, subunit 6
mm10_v2_chr11_+_4160348_4160404	0.283648	Rfx3_Rfx1_Rfx4	ENSMUST00000002198.3|Sf3a1|ENSMUSG00000002129.5|splicing factor 3a, subunit 1
mm10_v2_chr5_-_122372230_122372390	0.280127	Rfx3_Rfx1_Rfx4	ENSMUST00000031419.5|Fam216a|ENSMUSG00000029463.5|family with sequence similarity 216, member A
mm10_v2_chr19_+_3282901_3283071	0.27974	Rfx3_Rfx1_Rfx4	ENSMUST00000025745.3|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21 	ENSMUST00000025743.6|Mrpl21|ENSMUSG00000024829.6|mitochondrial ribosomal protein L21
mm10_v2_chr6_+_137735078_137735151	0.27839	Rfx3_Rfx1_Rfx4	ENSMUST00000064910.6|Strap|ENSMUSG00000030224.10|serine/threonine kinase receptor associated protein
mm10_v2_chr13_+_97137937_97138040	0.278033	Rfx3_Rfx1_Rfx4	ENSMUST00000042084.6|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000160139.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161639.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161913.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161825.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161929.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000022170.7|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2
mm10_v2_chr19_+_6364557_6364668	0.275237	Rfx3_Rfx1_Rfx4	ENSMUST00000155973.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr8_-_92355764_92355891	0.264161	Rfx3_Rfx1_Rfx4	ENSMUST00000180102.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179421.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179222.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene 	ENSMUST00000179029.1|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr6_-_29609607_29609642	0.263229	Rfx3_Rfx1_Rfx4	ENSMUST00000115251.1|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr8_+_124231359_124231450	0.257532	Rfx3_Rfx1_Rfx4	ENSMUST00000034458.8|Galnt2|ENSMUSG00000089704.3|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm10_v2_chr3_-_20035285_20035325	0.255031	Rfx3_Rfx1_Rfx4	ENSMUST00000108321.1|Hps3|ENSMUSG00000027615.8|Hermansky-Pudlak syndrome 3 homolog (human) 	ENSMUST00000012580.6|Hps3|ENSMUSG00000027615.8|Hermansky-Pudlak syndrome 3 homolog (human)
mm10_v2_chr17_+_24896488_24896530	0.253806	Rfx3_Rfx1_Rfx4	ENSMUST00000024978.6|Nme3|ENSMUSG00000073435.4|NME/NM23 nucleoside diphosphate kinase 3
mm10_v2_chr8_-_85555261_85555315	0.251944	Rfx3_Rfx1_Rfx4	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr11_+_120467635_120467719	0.250798	Rfx3_Rfx1_Rfx4	ENSMUST00000140862.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106205.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106203.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000026900.7|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate
mm10_v2_chr11_-_120932832_120932876	0.2487	Rfx3_Rfx1_Rfx4	ENSMUST00000056781.4|Ccdc57|ENSMUSG00000048445.6|coiled-coil domain containing 57
mm10_v2_chrX_-_49788204_49788243	0.240639	Rfx3_Rfx1_Rfx4	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr3_-_89213840_89213923	0.239339	Rfx3_Rfx1_Rfx4	ENSMUST00000173477.1|Mtx1|ENSMUSG00000064068.7|metaxin 1 	ENSMUST00000119222.1|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr11_-_100620165_100620209	0.236479	Rfx3_Rfx1_Rfx4	ENSMUST00000014339.8|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr11_+_76407143_76407201	0.232748	Rfx3_Rfx1_Rfx4	ENSMUST00000021203.6|Timm22|ENSMUSG00000020843.9|translocase of inner mitochondrial membrane 22 	ENSMUST00000152183.1|Timm22|ENSMUSG00000020843.9|translocase of inner mitochondrial membrane 22
mm10_v2_chr4_-_155086271_155086379	0.22903	Rfx3_Rfx1_Rfx4	ENSMUST00000030914.3|Rer1|ENSMUSG00000029048.3|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm10_v2_chr8_-_71381907_71381977	0.226686	Rfx3_Rfx1_Rfx4	ENSMUST00000002466.8|Nr2f6|ENSMUSG00000002393.8|nuclear receptor subfamily 2, group F, member 6
mm10_v2_chr11_+_78536393_78536492	0.226631	Rfx3_Rfx1_Rfx4	ENSMUST00000050366.8|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20 	ENSMUST00000108275.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr2_-_73775341_73775378	0.226417	Rfx3_Rfx1_Rfx4	ENSMUST00000112024.3|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000166199.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000180045.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr1_+_182124737_182124800	0.225154	Rfx3_Rfx1_Rfx4	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr2_+_36136384_36136428	0.224823	Rfx3_Rfx1_Rfx4	ENSMUST00000028250.2|Mrrf|ENSMUSG00000026887.3|mitochondrial ribosome recycling factor
mm10_v2_chr10_+_81606883_81607025	0.222283	Rfx3_Rfx1_Rfx4	ENSMUST00000119753.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000121138.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000099442.3|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr17_-_55915870_55915870	0.221822	Rfx3_Rfx1_Rfx4	ENSMUST00000074828.4|Rpl21-ps6|ENSMUSG00000059912.4|ribosomal protein L21, pseudogene 6
mm10_v2_chr5_+_124112297_124112351	0.219631	Rfx3_Rfx1_Rfx4	ENSMUST00000024470.6|Ogfod2|ENSMUSG00000023707.7|2-oxoglutarate and iron-dependent oxygenase domain containing 2 	ENSMUST00000119269.1|Ogfod2|ENSMUSG00000023707.7|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm10_v2_chr8_+_71592158_71592291	0.219575	Rfx3_Rfx1_Rfx4	ENSMUST00000034264.4|Pgls|ENSMUSG00000031807.4|6-phosphogluconolactonase 	ENSMUST00000138742.1|Pgls|ENSMUSG00000031807.4|6-phosphogluconolactonase 	ENSMUST00000143441.1|Pgls|ENSMUSG00000031807.4|6-phosphogluconolactonase
mm10_v2_chr8_-_25597459_25597517	0.213685	Rfx3_Rfx1_Rfx4	ENSMUST00000079160.6|Letm2|ENSMUSG00000037363.8|leucine zipper-EF-hand containing transmembrane protein 2
mm10_v2_chr5_+_136987019_136987019	0.208096	Rfx3_Rfx1_Rfx4	ENSMUST00000004968.4|Plod3|ENSMUSG00000004846.4|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm10_v2_chr17_-_80207299_80207308	0.202585	Rfx3_Rfx1_Rfx4	ENSMUST00000063417.9|Srsf7|ENSMUSG00000024097.10|serine/arginine-rich splicing factor 7
mm10_v2_chr7_-_121981669_121981711	0.199751	Rfx3_Rfx1_Rfx4	ENSMUST00000057576.7|Cog7|ENSMUSG00000034951.9|component of oligomeric golgi complex 7
mm10_v2_chr4_+_118621160_118621239	0.198683	Rfx3_Rfx1_Rfx4	ENSMUST00000147373.1|Ebna1bp2|ENSMUSG00000028729.9|EBNA1 binding protein 2
mm10_v2_chr9_-_67559703_67559703	0.197311	Rfx3_Rfx1_Rfx4	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr10_-_75764265_75764359	0.196833	Rfx3_Rfx1_Rfx4	ENSMUST00000001712.6|Cabin1|ENSMUSG00000020196.9|calcineurin binding protein 1
mm10_v2_chr19_+_6363719_6363810	0.19339	Rfx3_Rfx1_Rfx4	ENSMUST00000113489.1|Sf1|ENSMUSG00000024949.11|splicing factor 1 	ENSMUST00000113488.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr12_-_56613270_56613291	0.192335	Rfx3_Rfx1_Rfx4	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chrX_-_133898399_133898429	0.190819	Rfx3_Rfx1_Rfx4	ENSMUST00000087557.5|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr11_+_78245743_78245821	0.188782	Rfx3_Rfx1_Rfx4	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr10_+_33905015_33905111	0.185481	Rfx3_Rfx1_Rfx4	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr11_-_5878207_5878292	0.184037	Rfx3_Rfx1_Rfx4	ENSMUST00000102922.3|Pold2|ENSMUSG00000020471.5|polymerase (DNA directed), delta 2, regulatory subunit
mm10_v2_chr11_-_78245942_78245987	0.183301	Rfx3_Rfx1_Rfx4	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr8_-_83458386_83458397	0.181902	Rfx3_Rfx1_Rfx4	ENSMUST00000081506.3|Scoc|ENSMUSG00000063253.4|short coiled-coil protein
mm10_v2_chr5_-_23844085_23844161	0.180922	Rfx3_Rfx1_Rfx4	ENSMUST00000030851.6|Tomm7|ENSMUSG00000028998.6|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm10_v2_chr15_-_34443508_34443640	0.177518	Rfx3_Rfx1_Rfx4	ENSMUST00000079735.5|Rpl30|ENSMUSG00000058600.7|ribosomal protein L30
mm10_v2_chr16_-_31275277_31275290	0.175401	Rfx3_Rfx1_Rfx4	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr4_+_129600670_129600715	0.170771	Rfx3_Rfx1_Rfx4	ENSMUST00000102591.3|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000181579.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000173758.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234
mm10_v2_chr15_-_75841907_75841932	0.163799	Rfx3_Rfx1_Rfx4	ENSMUST00000100538.2|Zc3h3|ENSMUSG00000075600.2|zinc finger CCCH type containing 3
mm10_v2_chr8_-_34965631_34965714	0.163269	Rfx3_Rfx1_Rfx4	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr1_+_151428612_151428718	0.161514	Rfx3_Rfx1_Rfx4	ENSMUST00000065625.5|Trmt1l|ENSMUSG00000053286.5|tRNA methyltransferase 1 like
mm10_v2_chr7_-_67222412_67222458	0.158908	Rfx3_Rfx1_Rfx4	ENSMUST00000181631.1|1700112J16Rik|ENSMUSG00000097527.1|RIKEN cDNA 1700112J16 gene
mm10_v2_chr17_-_33955658_33955717	0.158323	Rfx3_Rfx1_Rfx4	ENSMUST00000174609.2|Rps18|ENSMUSG00000008668.8|ribosomal protein S18 	ENSMUST00000008812.7|Rps18|ENSMUSG00000008668.8|ribosomal protein S18
mm10_v2_chr16_+_17619503_17619517	0.15216	Rfx3_Rfx1_Rfx4	ENSMUST00000165092.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4
mm10_v2_chr8_+_83666827_83666882	0.147689	Rfx3_Rfx1_Rfx4	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr8_+_105701624_105701693	0.14562	Rfx3_Rfx1_Rfx4	ENSMUST00000093195.6|Pard6a|ENSMUSG00000005699.9|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm10_v2_chr10_+_87859255_87859266	0.144831	Rfx3_Rfx1_Rfx4	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr7_-_140881811_140881869	0.144515	Rfx3_Rfx1_Rfx4	ENSMUST00000106048.3|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000147331.2|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000137710.1|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr5_+_34761734_34761780	0.141212	Rfx3_Rfx1_Rfx4	ENSMUST00000080036.2|Htt|ENSMUSG00000029104.9|huntingtin
mm10_v2_chr13_+_59585259_59585441	0.139194	Rfx3_Rfx1_Rfx4	ENSMUST00000168367.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000022038.7|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000166923.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm10_v2_chr6_+_34780836_34780905	0.134372	Rfx3_Rfx1_Rfx4	ENSMUST00000115012.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115014.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115009.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3
mm10_v2_chr5_-_124478330_124478384	0.131647	Rfx3_Rfx1_Rfx4	ENSMUST00000031347.7|Rilpl2|ENSMUSG00000029401.7|Rab interacting lysosomal protein-like 2
mm10_v2_chr2_+_85037448_85037530	0.128474	Rfx3_Rfx1_Rfx4	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr6_-_83156393_83156400	0.126283	Rfx3_Rfx1_Rfx4	ENSMUST00000153148.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54 	ENSMUST00000125894.1|Wdr54|ENSMUSG00000030032.6|WD repeat domain 54
mm10_v2_chr19_-_10577362_10577407	0.125551	Rfx3_Rfx1_Rfx4	ENSMUST00000025568.2|Tmem138|ENSMUSG00000024666.5|transmembrane protein 138
mm10_v2_chr4_-_40722307_40722398	0.125008	Rfx3_Rfx1_Rfx4	ENSMUST00000181475.1|Gm6297|ENSMUSG00000097123.1|predicted gene 6297
mm10_v2_chr14_+_58893465_58893506	0.12317	Rfx3_Rfx1_Rfx4	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr12_+_85219475_85219546	0.120869	Rfx3_Rfx1_Rfx4	ENSMUST00000004910.5|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta 	ENSMUST00000140900.1|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta 	ENSMUST00000136495.1|Eif2b2|ENSMUSG00000004788.5|eukaryotic translation initiation factor 2B, subunit 2 beta
mm10_v2_chr5_-_140702241_140702378	0.119639	Rfx3_Rfx1_Rfx4	ENSMUST00000077890.5|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000041783.7|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000142081.1|Iqce|ENSMUSG00000036555.8|IQ motif containing E
mm10_v2_chr3_+_130068390_130068412	0.118809	Rfx3_Rfx1_Rfx4	ENSMUST00000076703.6|Gm9396|ENSMUSG00000063328.6|predicted gene 9396
mm10_v2_chrX_-_133898292_133898377	0.115515	Rfx3_Rfx1_Rfx4	ENSMUST00000176718.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6 	ENSMUST00000176641.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr7_-_126583177_126583255	0.112113	Rfx3_Rfx1_Rfx4	ENSMUST00000098036.2|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 	ENSMUST00000032962.4|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm10_v2_chr10_+_87859062_87859094	0.107597	Rfx3_Rfx1_Rfx4	ENSMUST00000095360.4|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr9_+_78051938_78051958	0.102461	Rfx3_Rfx1_Rfx4	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr18_-_61176994_61177057	0.102129	Rfx3_Rfx1_Rfx4	ENSMUST00000091884.4|Hmgxb3|ENSMUSG00000024622.7|HMG box domain containing 3
mm10_v2_chr17_+_34836987_34837049	0.0978635	Rfx3_Rfx1_Rfx4	ENSMUST00000173874.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease 	ENSMUST00000046244.8|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease 	ENSMUST00000180043.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease
mm10_v2_chr2_-_5895319_5895432	0.0941427	Rfx3_Rfx1_Rfx4	ENSMUST00000026926.4|Sec61a2|ENSMUSG00000025816.9|Sec61, alpha subunit 2 (S. cerevisiae) 	ENSMUST00000102981.3|Sec61a2|ENSMUSG00000025816.9|Sec61, alpha subunit 2 (S. cerevisiae)
mm10_v2_chr19_-_42086338_42086375	0.0898662	Rfx3_Rfx1_Rfx4	ENSMUST00000051772.8|Morn4|ENSMUSG00000049670.8|MORN repeat containing 4
mm10_v2_chr3_+_103968588_103968661	0.0841786	Rfx3_Rfx1_Rfx4	ENSMUST00000156262.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr5_-_121527186_121527258	0.0794797	Rfx3_Rfx1_Rfx4	ENSMUST00000152270.1|Mapkapk5|ENSMUSG00000029454.9|MAP kinase-activated protein kinase 5
mm10_v2_chr4_-_12087912_12088011	0.0782519	Rfx3_Rfx1_Rfx4	ENSMUST00000050686.3|Tmem67|ENSMUSG00000049488.8|transmembrane protein 67
mm10_v2_chr15_+_103272893_103272911	0.0744217	Rfx3_Rfx1_Rfx4	ENSMUST00000100162.3|Copz1|ENSMUSG00000060992.8|coatomer protein complex, subunit zeta 1
mm10_v2_chr17_+_85090647_85090726	0.0733944	Rfx3_Rfx1_Rfx4	ENSMUST00000095188.5|Camkmt|ENSMUSG00000071037.5|calmodulin-lysine N-methyltransferase
mm10_v2_chr2_+_29889217_29889243	0.0728062	Rfx3_Rfx1_Rfx4	ENSMUST00000123335.1|Odf2|ENSMUSG00000026790.13|outer dense fiber of sperm tails 2
mm10_v2_chr14_-_78536854_78536879	0.0720825	Rfx3_Rfx1_Rfx4	ENSMUST00000022593.5|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr16_+_4741543_4741592	0.0688125	Rfx3_Rfx1_Rfx4	ENSMUST00000120232.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr3_-_34351685_34351715	0.0687493	Rfx3_Rfx1_Rfx4	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr2_-_151744142_151744205	0.0658219	Rfx3_Rfx1_Rfx4	ENSMUST00000109869.1|Psmf1|ENSMUSG00000032869.9|proteasome (prosome, macropain) inhibitor subunit 1
mm10_v2_chr17_+_24696234_24696320	0.0649894	Rfx3_Rfx1_Rfx4	ENSMUST00000019464.7|Noxo1|ENSMUSG00000019320.7|NADPH oxidase organizer 1
mm10_v2_chr2_+_85037212_85037302	0.0598754	Rfx3_Rfx1_Rfx4	ENSMUST00000077798.6|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr17_+_34837172_34837248	0.058254	Rfx3_Rfx1_Rfx4	ENSMUST00000173995.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease
mm10_v2_chrX_-_134600976_134601125	0.0573975	Rfx3_Rfx1_Rfx4	ENSMUST00000033621.6|Gla|ENSMUSG00000031266.6|galactosidase, alpha
mm10_v2_chr7_+_67222544_67222635	0.0567166	Rfx3_Rfx1_Rfx4	ENSMUST00000058771.5|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4 	ENSMUST00000179106.1|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4
mm10_v2_chr7_+_4740178_4740206	0.0556526	Rfx3_Rfx1_Rfx4	ENSMUST00000108583.2|Suv420h2|ENSMUSG00000059851.9|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm10_v2_chrX_+_56787701_56787725	0.0512621	Rfx3_Rfx1_Rfx4	ENSMUST00000151033.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr16_-_91728975_91729092	0.0508041	Rfx3_Rfx1_Rfx4	ENSMUST00000073466.6|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr3_-_146770603_146770781	0.0489671	Rfx3_Rfx1_Rfx4	ENSMUST00000106138.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr9_+_105395348_105395411	0.0486207	Rfx3_Rfx1_Rfx4	ENSMUST00000035181.3|Aste1|ENSMUSG00000032567.8|asteroid homolog 1 (Drosophila)
mm10_v2_chr15_-_78174090_78174109	0.0468478	Rfx3_Rfx1_Rfx4	ENSMUST00000016781.6|Ift27|ENSMUSG00000016637.6|intraflagellar transport 27
mm10_v2_chr4_-_129600586_129600599	0.0433596	Rfx3_Rfx1_Rfx4	ENSMUST00000135055.1|Eif3i|ENSMUSG00000028798.10|eukaryotic translation initiation factor 3, subunit I
mm10_v2_chr1_-_160077918_160077944	0.0431058	Rfx3_Rfx1_Rfx4	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr1_+_179668202_179668268	0.0415697	Rfx3_Rfx1_Rfx4	ENSMUST00000040538.3|Sccpdh|ENSMUSG00000038936.7|saccharopine dehydrogenase (putative)
mm10_v2_chr4_-_129600642_129600653	0.0386202	Rfx3_Rfx1_Rfx4	ENSMUST00000102593.4|Eif3i|ENSMUSG00000028798.10|eukaryotic translation initiation factor 3, subunit I
mm10_v2_chr2_+_119288725_119288771	0.035537	Rfx3_Rfx1_Rfx4	ENSMUST00000037280.4|Vps18|ENSMUSG00000034216.6|vacuolar protein sorting 18 (yeast)
mm10_v2_chr4_+_138972885_138972920	0.0297312	Rfx3_Rfx1_Rfx4	ENSMUST00000123636.1|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4 	ENSMUST00000043042.3|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4 	ENSMUST00000050949.2|Tmco4|ENSMUSG00000041143.10|transmembrane and coiled-coil domains 4
mm10_v2_chr1_+_84839833_84839875	0.0255386	Rfx3_Rfx1_Rfx4	ENSMUST00000097672.3|Fbxo36|ENSMUSG00000073633.3|F-box protein 36
mm10_v2_chr17_+_43389436_43389497	0.0251935	Rfx3_Rfx1_Rfx4	ENSMUST00000113599.1|Gpr116|ENSMUSG00000056492.5|G protein-coupled receptor 116
mm10_v2_chr18_-_46198810_46198824	0.0224948	Rfx3_Rfx1_Rfx4	ENSMUST00000167364.1|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr7_+_24547150_24547244	0.020931	Rfx3_Rfx1_Rfx4	ENSMUST00000063249.8|Xrcc1|ENSMUSG00000051768.8|X-ray repair complementing defective repair in Chinese hamster cells 1
mm10_v2_chr12_-_84361802_84361838	0.0200364	Rfx3_Rfx1_Rfx4	ENSMUST00000021659.1|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B 	ENSMUST00000065536.2|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B
mm10_v2_chr4_+_103114712_103114762	0.0162143	Rfx3_Rfx1_Rfx4	ENSMUST00000143417.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr2_-_167060417_167060430	0.0142118	Rfx3_Rfx1_Rfx4	ENSMUST00000155281.1|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr2_-_119156824_119157034	0.0124852	Rfx3_Rfx1_Rfx4	ENSMUST00000135419.1|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3 	ENSMUST00000129351.1|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3 	ENSMUST00000139519.1|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3 	ENSMUST00000094695.5|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3
mm10_v2_chr16_-_32099697_32099752	0.0121038	Rfx3_Rfx1_Rfx4	ENSMUST00000155966.1|Pigx|ENSMUSG00000023791.8|phosphatidylinositol glycan anchor biosynthesis, class X 	ENSMUST00000096109.4|Pigx|ENSMUSG00000023791.8|phosphatidylinositol glycan anchor biosynthesis, class X
mm10_v2_chr11_+_48800357_48800369	0.0115576	Rfx3_Rfx1_Rfx4	ENSMUST00000020640.7|Gnb2l1|ENSMUSG00000020372.9|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1
mm10_v2_chr4_+_6365650_6365720	0.00962769	Rfx3_Rfx1_Rfx4	ENSMUST00000029912.4|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000103008.5|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000175769.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000108374.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000140830.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein
mm10_v2_chr10_+_81070035_81070121	0.00596325	Rfx3_Rfx1_Rfx4	ENSMUST00000005057.6|Thop1|ENSMUSG00000004929.6|thimet oligopeptidase 1
mm10_v2_chr14_-_70153811_70153846	0.00586188	Rfx3_Rfx1_Rfx4	ENSMUST00000035612.5|Ccar2|ENSMUSG00000033712.5|cell cycle activator and apoptosis regulator 2
mm10_v2_chr2_+_27009926_27009935	0.00584816	Rfx3_Rfx1_Rfx4	ENSMUST00000114005.2|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114004.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114006.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114007.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr15_-_34443209_34443227	0.00420642	Rfx3_Rfx1_Rfx4	ENSMUST00000009039.5|Rpl30|ENSMUSG00000058600.7|ribosomal protein L30
