mm10_v2_chr10_-_127534540_127534566	10.6554	Smad4	ENSMUST00000095266.2|Nxph4|ENSMUSG00000040258.6|neurexophilin 4
mm10_v2_chr19_+_5740885_5740904	6.20282	Smad4	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr4_-_117178726_117178754	5.53712	Smad4	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr7_-_70360593_70360746	5.30833	Smad4	ENSMUST00000032768.7|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
mm10_v2_chr7_+_45216671_45216695	5.17565	Smad4	ENSMUST00000134420.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr7_+_45215753_45215852	4.9209	Smad4	ENSMUST00000033060.6|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000155313.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000107801.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr18_-_84086379_84086404	4.48195	Smad4	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr10_-_92164666_92164754	4.38217	Smad4	ENSMUST00000183123.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000182033.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr10_-_42583628_42583639	4.17903	Smad4	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr14_+_50944499_50944514	4.11103	Smad4	ENSMUST00000178092.1|Pnp|ENSMUSG00000021871.11|purine-nucleoside phosphorylase
mm10_v2_chr3_+_127633134_127633140	4.10676	Smad4	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr5_+_92683625_92683648	3.78053	Smad4	ENSMUST00000168878.1|Shroom3|ENSMUSG00000029381.9|shroom family member 3
mm10_v2_chr14_-_104467984_104468041	3.57887	Smad4	ENSMUST00000053016.8|Pou4f1|ENSMUSG00000048349.8|POU domain, class 4, transcription factor 1
mm10_v2_chr1_+_153652943_153653025	3.18606	Smad4	ENSMUST00000041776.5|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr17_+_75178797_75178824	3.07074	Smad4	ENSMUST00000112516.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1 	ENSMUST00000135447.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr14_+_12189943_12190001	3.0376	Smad4	ENSMUST00000119888.1|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr11_-_5261558_5261637	2.82919	Smad4	ENSMUST00000020662.8|Kremen1|ENSMUSG00000020393.10|kringle containing transmembrane protein 1
mm10_v2_chr17_+_75178911_75178961	2.81436	Smad4	ENSMUST00000112514.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr4_+_97772734_97772848	2.71145	Smad4	ENSMUST00000152023.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr8_+_45658273_45658298	2.66441	Smad4	ENSMUST00000153798.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr17_+_72918298_72918316	2.65674	Smad4	ENSMUST00000024857.6|Lbh|ENSMUSG00000024063.6|limb-bud and heart
mm10_v2_chr13_-_21832194_21832198	2.63391	Smad4	ENSMUST00000102979.1|Hist1h4n|ENSMUSG00000069305.3|histone cluster 1, H4n
mm10_v2_chr17_-_70851710_70851738	2.58666	Smad4	ENSMUST00000166395.2|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr11_-_3931960_3932159	2.55041	Smad4	ENSMUST00000109990.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000020710.4|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109989.3|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109991.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109993.2|Tcn2|ENSMUSG00000020432.6|transcobalamin 2
mm10_v2_chr5_+_64803513_64803530	2.53677	Smad4	ENSMUST00000165536.1|Klf3|ENSMUSG00000029178.8|Kruppel-like factor 3 (basic)
mm10_v2_chr18_+_5593566_5593602	2.46319	Smad4	ENSMUST00000160910.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr14_-_54577578_54577661	2.40275	Smad4	ENSMUST00000054487.8|Ajuba|ENSMUSG00000022178.10|ajuba LIM protein
mm10_v2_chr16_-_55283237_55283287	2.24634	Smad4	ENSMUST00000036412.3|Zpld1|ENSMUSG00000064310.4|zona pellucida like domain containing 1
mm10_v2_chr11_-_3931789_3931816	2.17725	Smad4	ENSMUST00000109992.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109988.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2
mm10_v2_chr11_+_60699758_60699845	2.15612	Smad4	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr5_-_124352233_124352302	2.05636	Smad4	ENSMUST00000111472.1|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chr11_+_60699718_60699750	2.0423	Smad4	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr18_+_57133065_57133090	1.98962	Smad4	ENSMUST00000075770.6|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr5_+_75574916_75575001	1.98084	Smad4	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr2_+_27676440_27676454	1.96674	Smad4	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr14_-_57826128_57826180	1.96425	Smad4	ENSMUST00000022536.2|Ska3|ENSMUSG00000021965.2|spindle and kinetochore associated complex subunit 3
mm10_v2_chr15_+_39076885_39076938	1.85902	Smad4	ENSMUST00000067072.3|Cthrc1|ENSMUSG00000054196.6|collagen triple helix repeat containing 1
mm10_v2_chr5_+_120431770_120431905	1.85083	Smad4	ENSMUST00000031591.7|Lhx5|ENSMUSG00000029595.7|LIM homeobox protein 5
mm10_v2_chr13_+_21735055_21735070	1.83609	Smad4	ENSMUST00000087714.4|Hist1h4j|ENSMUSG00000067455.4|histone cluster 1, H4j
mm10_v2_chr13_-_98890974_98891035	1.8323	Smad4	ENSMUST00000179301.1|Tnpo1|ENSMUSG00000009470.10|transportin 1 	ENSMUST00000179271.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr19_-_40271506_40271616	1.79979	Smad4	ENSMUST00000068439.6|Pdlim1|ENSMUSG00000055044.6|PDZ and LIM domain 1 (elfin)
mm10_v2_chr17_+_34597852_34597894	1.78111	Smad4	ENSMUST00000174496.2|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor 	ENSMUST00000015596.3|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor 	ENSMUST00000173992.1|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor
mm10_v2_chr6_+_38433913_38433965	1.77161	Smad4	ENSMUST00000160583.1|Ubn2|ENSMUSG00000038538.11|ubinuclein 2
mm10_v2_chrX_+_99136119_99136138	1.73855	Smad4	ENSMUST00000052839.6|Efnb1|ENSMUSG00000031217.8|ephrin B1
mm10_v2_chr13_+_23581563_23581598	1.73029	Smad4	ENSMUST00000102968.1|Hist1h4d|ENSMUSG00000061482.6|histone cluster 1, H4d
mm10_v2_chr14_+_54640952_54640952	1.64577	Smad4	ENSMUST00000169818.2|Gm17606|ENSMUSG00000091306.2|predicted gene, 17606
mm10_v2_chr13_-_98891036_98891063	1.6453	Smad4	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr11_-_69413675_69413675	1.56223	Smad4	ENSMUST00000094077.4|Kdm6b|ENSMUSG00000018476.7|KDM1 lysine (K)-specific demethylase 6B
mm10_v2_chr7_+_110221697_110221708	1.52623	Smad4	ENSMUST00000033325.7|Swap70|ENSMUSG00000031015.7|SWA-70 protein
mm10_v2_chr2_+_119547697_119547762	1.49114	Smad4	ENSMUST00000014221.6|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1 	ENSMUST00000119172.1|Chp1|ENSMUSG00000014077.7|calcineurin-like EF hand protein 1
mm10_v2_chr10_+_80150448_80150482	1.47725	Smad4	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr9_+_13621646_13621646	1.44811	Smad4	ENSMUST00000034401.8|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr4_+_128688726_128688795	1.44603	Smad4	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr3_+_88607742_88607791	1.43001	Smad4	ENSMUST00000175903.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr9_-_105521147_105521265	1.41905	Smad4	ENSMUST00000176770.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000085133.6|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr9_-_45936049_45936106	1.36466	Smad4	ENSMUST00000034590.2|Tagln|ENSMUSG00000032085.4|transgelin
mm10_v2_chr7_+_82867327_82867357	1.33022	Smad4	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr14_-_20496780_20496901	1.31923	Smad4	ENSMUST00000022353.3|Mss51|ENSMUSG00000021815.3|MSS51 mitochondrial translational activator
mm10_v2_chr13_-_23551648_23551672	1.28562	Smad4	ENSMUST00000102971.1|Hist1h4f|ENSMUSG00000069274.3|histone cluster 1, H4f
mm10_v2_chr4_+_116221689_116221698	1.24824	Smad4	ENSMUST00000106490.2|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr13_-_22042949_22042978	1.21718	Smad4	ENSMUST00000091741.4|Hist1h2ag|ENSMUSG00000069301.4|histone cluster 1, H2ag
mm10_v2_chr1_+_187997835_187997882	1.21587	Smad4	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr10_+_127739516_127739592	1.19028	Smad4	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr4_+_116221633_116221661	1.18466	Smad4	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr1_-_143702832_143702893	1.17076	Smad4	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chr11_+_60104971_60105013	1.16154	Smad4	ENSMUST00000064190.6|Rai1|ENSMUSG00000062115.9|retinoic acid induced 1
mm10_v2_chr1_+_187997821_187997834	1.1607	Smad4	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr9_-_21852603_21852644	1.15278	Smad4	ENSMUST00000034728.7|Dock6|ENSMUSG00000032198.8|dedicator of cytokinesis 6
mm10_v2_chr3_+_107101551_107101567	1.13509	Smad4	ENSMUST00000038695.1|Kcna2|ENSMUSG00000040724.1|potassium voltage-gated channel, shaker-related subfamily, member 2
mm10_v2_chr5_+_30913398_30913403	1.0871	Smad4	ENSMUST00000031055.5|Emilin1|ENSMUSG00000029163.7|elastin microfibril interfacer 1
mm10_v2_chr3_-_33143227_33143266	1.0861	Smad4	ENSMUST00000108219.1|Pex5l|ENSMUSG00000027674.10|peroxisomal biogenesis factor 5-like
mm10_v2_chr8_-_34146974_34147033	1.0804	Smad4	ENSMUST00000033910.8|Leprotl1|ENSMUSG00000031513.8|leptin receptor overlapping transcript-like 1
mm10_v2_chr12_+_13269111_13269154	1.05545	Smad4	ENSMUST00000042953.8|Nbas|ENSMUSG00000020576.9|neuroblastoma amplified sequence
mm10_v2_chr13_+_23531044_23531088	1.02093	Smad4	ENSMUST00000102972.3|Hist1h4h|ENSMUSG00000060981.5|histone cluster 1, H4h
mm10_v2_chr4_+_116221590_116221618	1.00868	Smad4	ENSMUST00000147292.1|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chrX_-_72274747_72274803	1.00779	Smad4	ENSMUST00000064780.3|Gabre|ENSMUSG00000031340.8|gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
mm10_v2_chr13_+_22043189_22043214	0.966811	Smad4	ENSMUST00000110452.1|Hist1h2bj|ENSMUSG00000069300.3|histone cluster 1, H2bj
mm10_v2_chr6_-_83775767_83775826	0.962939	Smad4	ENSMUST00000014892.6|Tex261|ENSMUSG00000014748.7|testis expressed gene 261
mm10_v2_chr14_-_64949632_64949674	0.951445	Smad4	ENSMUST00000176832.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1
mm10_v2_chr7_-_45870928_45870986	0.934151	Smad4	ENSMUST00000146672.1|Grin2d|ENSMUSG00000002771.10|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm10_v2_chr14_-_64949838_64949886	0.93097	Smad4	ENSMUST00000067843.3|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176489.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175905.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000022544.7|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000175744.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1 	ENSMUST00000176128.1|Hmbox1|ENSMUSG00000021972.8|homeobox containing 1
mm10_v2_chr7_-_45052865_45052914	0.915442	Smad4	ENSMUST00000057293.6|Prr12|ENSMUSG00000046574.7|proline rich 12
mm10_v2_chr2_+_69670100_69670134	0.915393	Smad4	ENSMUST00000100050.3|Klhl41|ENSMUSG00000075307.3|kelch-like 41
mm10_v2_chr7_+_101421691_101421726	0.884346	Smad4	ENSMUST00000163751.2|Pde2a|ENSMUSG00000030653.10|phosphodiesterase 2A, cGMP-stimulated 	ENSMUST00000084894.7|Pde2a|ENSMUSG00000030653.10|phosphodiesterase 2A, cGMP-stimulated 	ENSMUST00000166652.1|Pde2a|ENSMUSG00000030653.10|phosphodiesterase 2A, cGMP-stimulated
mm10_v2_chr3_-_96220880_96220899	0.882228	Smad4	ENSMUST00000090782.3|Hist2h2ac|ENSMUSG00000068855.3|histone cluster 2, H2ac
mm10_v2_chr10_+_75589363_75589390	0.880172	Smad4	ENSMUST00000072217.2|Ggt5|ENSMUSG00000006344.10|gamma-glutamyltransferase 5
mm10_v2_chr8_-_41016749_41016769	0.860634	Smad4	ENSMUST00000117735.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr7_+_127485221_127485221	0.839269	Smad4	ENSMUST00000048896.6|Fbrs|ENSMUSG00000042423.7|fibrosin
mm10_v2_chr7_+_141949846_141949868	0.829316	Smad4	ENSMUST00000172652.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr7_-_27181149_27181162	0.824093	Smad4	ENSMUST00000071986.6|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity 	ENSMUST00000121848.1|Mia|ENSMUSG00000089661.3|melanoma inhibitory activity
mm10_v2_chr16_+_43235856_43235880	0.822463	Smad4	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr3_+_89436699_89436734	0.794934	Smad4	ENSMUST00000038942.3|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1 	ENSMUST00000130858.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1
mm10_v2_chr7_+_141216626_141216700	0.764508	Smad4	ENSMUST00000141804.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 	ENSMUST00000148975.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm10_v2_chr16_+_43247278_43247309	0.762209	Smad4	ENSMUST00000114691.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000079441.6|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr14_+_64950037_64950056	0.756893	Smad4	ENSMUST00000043914.5|Ints9|ENSMUSG00000021975.7|integrator complex subunit 9
mm10_v2_chr1_-_45503282_45503282	0.751602	Smad4	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr8_-_47352348_47352367	0.737844	Smad4	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr15_-_96460838_96460856	0.735631	Smad4	ENSMUST00000047835.6|Scaf11|ENSMUSG00000033228.7|SR-related CTD-associated factor 11
mm10_v2_chr4_+_148130883_148130915	0.732278	Smad4	ENSMUST00000084129.2|Mad2l2|ENSMUSG00000029003.5|MAD2 mitotic arrest deficient-like 2
mm10_v2_chr7_+_141949982_141950086	0.718292	Smad4	ENSMUST00000105989.2|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000075528.5|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000174499.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr6_+_54039935_54040039	0.679009	Smad4	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr7_-_119895697_119895752	0.668313	Smad4	ENSMUST00000059851.6|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr12_+_76404168_76404264	0.666544	Smad4	ENSMUST00000080449.5|Hspa2|ENSMUSG00000059970.6|heat shock protein 2
mm10_v2_chr11_-_106160708_106160860	0.624358	Smad4	ENSMUST00000106875.1|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr9_+_122888471_122888471	0.622987	Smad4	ENSMUST00000063980.6|Zkscan7|ENSMUSG00000063488.5|zinc finger with KRAB and SCAN domains 7
mm10_v2_chr9_-_57552760_57552771	0.622466	Smad4	ENSMUST00000034856.8|Mpi|ENSMUSG00000032306.8|mannose phosphate isomerase
mm10_v2_chr10_+_18845071_18845112	0.609875	Smad4	ENSMUST00000019998.7|Perp|ENSMUSG00000019851.7|PERP, TP53 apoptosis effector
mm10_v2_chr17_-_35162969_35163040	0.601051	Smad4	ENSMUST00000174805.1|Prrc2a|ENSMUSG00000024393.8|proline-rich coiled-coil 2A
mm10_v2_chr8_-_92356103_92356120	0.550787	Smad4	ENSMUST00000034183.3|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chr6_+_147032528_147032547	0.54081	Smad4	ENSMUST00000036194.4|Rep15|ENSMUSG00000040121.4|RAB15 effector protein
mm10_v2_chr1_-_16770138_16770159	0.51424	Smad4	ENSMUST00000071842.8|Gm5828|ENSMUSG00000091020.2|predicted gene 5828
mm10_v2_chr2_+_120476911_120476976	0.504975	Smad4	ENSMUST00000110716.1|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000028748.6|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000090028.5|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000110719.2|Capn3|ENSMUSG00000079110.5|calpain 3
mm10_v2_chr6_+_54039558_54039575	0.504	Smad4	ENSMUST00000046856.7|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr6_+_15720654_15720747	0.495507	Smad4	ENSMUST00000101663.3|Mdfic|ENSMUSG00000041390.12|MyoD family inhibitor domain containing
mm10_v2_chr10_+_33905015_33905111	0.490571	Smad4	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr1_-_74588117_74588145	0.489365	Smad4	ENSMUST00000066986.6|Zfp142|ENSMUSG00000026135.11|zinc finger protein 142
mm10_v2_chr7_+_101394361_101394436	0.488423	Smad4	ENSMUST00000154239.1|Arap1|ENSMUSG00000032812.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 	ENSMUST00000098243.2|Arap1|ENSMUSG00000032812.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm10_v2_chr11_-_4160286_4160305	0.479298	Smad4	ENSMUST00000093381.4|Ccdc157|ENSMUSG00000051427.8|coiled-coil domain containing 157 	ENSMUST00000101626.2|Ccdc157|ENSMUSG00000051427.8|coiled-coil domain containing 157
mm10_v2_chr3_+_89436736_89436761	0.477121	Smad4	ENSMUST00000146630.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1 	ENSMUST00000145753.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1
mm10_v2_chr9_+_21424984_21425244	0.475956	Smad4	ENSMUST00000172482.1|Dnm2|ENSMUSG00000033335.11|dynamin 2 	ENSMUST00000174050.1|Dnm2|ENSMUSG00000033335.11|dynamin 2
mm10_v2_chr6_+_54040078_54040091	0.474276	Smad4	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr3_+_96221111_96221134	0.473928	Smad4	ENSMUST00000090781.6|Hist2h2be|ENSMUSG00000068854.6|histone cluster 2, H2be
mm10_v2_chr14_-_54554359_54554370	0.453341	Smad4	ENSMUST00000022784.8|Haus4|ENSMUSG00000022177.8|HAUS augmin-like complex, subunit 4
mm10_v2_chr9_-_20898592_20898631	0.449191	Smad4	ENSMUST00000004206.8|Eif3g|ENSMUSG00000070319.5|eukaryotic translation initiation factor 3, subunit G
mm10_v2_chr3_-_146839365_146839367	0.437998	Smad4	ENSMUST00000084614.3|Gm10288|ENSMUSG00000070343.2|predicted gene 10288
mm10_v2_chrX_+_136270253_136270269	0.423113	Smad4	ENSMUST00000178632.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENSMUST00000053540.4|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chr11_-_106160101_106160168	0.421173	Smad4	ENSMUST00000045923.3|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr7_+_83755904_83755956	0.419404	Smad4	ENSMUST00000051522.8|Gm7964|ENSMUSG00000063902.6|predicted gene 7964 	ENSMUST00000042280.7|Gm7964|ENSMUSG00000063902.6|predicted gene 7964
mm10_v2_chr10_+_91083036_91083075	0.417303	Smad4	ENSMUST00000020149.5|Ikbip|ENSMUSG00000019975.5|IKBKB interacting protein
mm10_v2_chrX_+_151803642_151803673	0.415315	Smad4	ENSMUST00000156616.2|Huwe1|ENSMUSG00000025261.11|HECT, UBA and WWE domain containing 1
mm10_v2_chr16_+_34784917_34784935	0.407067	Smad4	ENSMUST00000023538.8|Mylk|ENSMUSG00000022836.10|myosin, light polypeptide kinase
mm10_v2_chrX_+_136270302_136270352	0.397518	Smad4	ENSMUST00000113112.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chr4_+_130055010_130055047	0.38473	Smad4	ENSMUST00000123617.1|Col16a1|ENSMUSG00000040690.9|collagen, type XVI, alpha 1
mm10_v2_chr11_+_4160348_4160404	0.384212	Smad4	ENSMUST00000002198.3|Sf3a1|ENSMUSG00000002129.5|splicing factor 3a, subunit 1
mm10_v2_chr5_+_121795034_121795034	0.382463	Smad4	ENSMUST00000162327.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr3_-_116968827_116968858	0.37513	Smad4	ENSMUST00000119557.1|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr4_-_148500449_148500466	0.369111	Smad4	ENSMUST00000030840.3|Angptl7|ENSMUSG00000028989.3|angiopoietin-like 7
mm10_v2_chr4_+_133011506_133011546	0.353333	Smad4	ENSMUST00000105915.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1 	ENSMUST00000105916.1|Ahdc1|ENSMUSG00000037692.8|AT hook, DNA binding motif, containing 1
mm10_v2_chr2_+_27079371_27079385	0.33864	Smad4	ENSMUST00000091233.6|Adamtsl2|ENSMUSG00000036040.8|ADAMTS-like 2
mm10_v2_chr18_-_35498856_35498925	0.329129	Smad4	ENSMUST00000025215.8|Sil1|ENSMUSG00000024357.9|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm10_v2_chr10_-_91082653_91082662	0.319709	Smad4	ENSMUST00000159110.1|Apaf1|ENSMUSG00000019979.6|apoptotic peptidase activating factor 1
mm10_v2_chr9_+_106429537_106429548	0.308658	Smad4	ENSMUST00000059802.6|Rpl29|ENSMUSG00000048758.7|ribosomal protein L29
mm10_v2_chr10_-_91082704_91082773	0.289589	Smad4	ENSMUST00000162618.1|Apaf1|ENSMUSG00000019979.6|apoptotic peptidase activating factor 1 	ENSMUST00000020157.6|Apaf1|ENSMUSG00000019979.6|apoptotic peptidase activating factor 1 	ENSMUST00000160788.1|Apaf1|ENSMUSG00000019979.6|apoptotic peptidase activating factor 1
mm10_v2_chrX_-_150588071_150588153	0.282816	Smad4	ENSMUST00000140207.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112719.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112727.3|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112721.3|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000026303.9|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2
mm10_v2_chr15_-_98607611_98607638	0.275054	Smad4	ENSMUST00000096224.4|Adcy6|ENSMUSG00000022994.8|adenylate cyclase 6
mm10_v2_chr4_+_126677630_126677646	0.252406	Smad4	ENSMUST00000030642.2|Psmb2|ENSMUSG00000028837.2|proteasome (prosome, macropain) subunit, beta type 2
mm10_v2_chr2_-_29869785_29869785	0.249278	Smad4	ENSMUST00000047607.1|2600006K01Rik|ENSMUSG00000039798.1|RIKEN cDNA 2600006K01 gene
mm10_v2_chr10_+_91082940_91083028	0.239183	Smad4	ENSMUST00000020150.3|Ikbip|ENSMUSG00000019975.5|IKBKB interacting protein
mm10_v2_chrX_+_18162575_18162657	0.230055	Smad4	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr5_-_24445166_24445220	0.224356	Smad4	ENSMUST00000115043.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase 	ENSMUST00000115041.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr13_-_115090123_115090241	0.209031	Smad4	ENSMUST00000109226.3|Pelo|ENSMUSG00000042275.8|pelota homolog (Drosophila)
mm10_v2_chr2_+_69897220_69897247	0.198976	Smad4	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr7_-_4778141_4778144	0.198509	Smad4	ENSMUST00000094892.5|Il11|ENSMUSG00000004371.8|interleukin 11
mm10_v2_chr5_+_7179299_7179365	0.189454	Smad4	ENSMUST00000179460.1|Tubb4b-ps1|ENSMUSG00000095159.1|tubulin, beta 4B class IVB, pseudogene 1
mm10_v2_chr5_-_24445254_24445287	0.185102	Smad4	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr11_+_4637734_4637789	0.179953	Smad4	ENSMUST00000109930.2|Ascc2|ENSMUSG00000020412.10|activating signal cointegrator 1 complex subunit 2 	ENSMUST00000070257.7|Ascc2|ENSMUSG00000020412.10|activating signal cointegrator 1 complex subunit 2
mm10_v2_chr2_-_128967725_128967725	0.176369	Smad4	ENSMUST00000099385.2|Gm10762|ENSMUSG00000074807.2|predicted gene 10762
mm10_v2_chr17_+_34145231_34145271	0.14613	Smad4	ENSMUST00000171231.1|H2-DMb2|ENSMUSG00000037548.8|histocompatibility 2, class II, locus Mb2
mm10_v2_chr5_+_32611171_32611245	0.133539	Smad4	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr19_+_46328179_46328205	0.127304	Smad4	ENSMUST00000026256.2|Fbxl15|ENSMUSG00000025226.5|F-box and leucine-rich repeat protein 15 	ENSMUST00000177667.1|Fbxl15|ENSMUSG00000025226.5|F-box and leucine-rich repeat protein 15
mm10_v2_chr4_-_129742275_129742312	0.124661	Smad4	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr3_-_116968969_116969004	0.12111	Smad4	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr7_+_4690760_4690928	0.108139	Smad4	ENSMUST00000048248.7|Brsk1|ENSMUSG00000035390.10|BR serine/threonine kinase 1
mm10_v2_chr13_-_41847626_41847684	0.099904	Smad4	ENSMUST00000121404.1|Adtrp|ENSMUSG00000058022.7|androgen dependent TFPI regulating protein
mm10_v2_chr5_-_24601961_24602012	0.0874019	Smad4	ENSMUST00000030791.7|Smarcd3|ENSMUSG00000028949.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
mm10_v2_chr17_+_46646225_46646272	0.0724032	Smad4	ENSMUST00000002844.7|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2 	ENSMUST00000113429.1|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2 	ENSMUST00000113430.1|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2
mm10_v2_chr18_-_38918642_38918771	0.062533	Smad4	ENSMUST00000040647.4|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr11_-_102319093_102319105	0.0477288	Smad4	ENSMUST00000174302.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000178839.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000006754.7|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr11_-_115419917_115419962	0.0393283	Smad4	ENSMUST00000106537.1|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000043931.2|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000073791.3|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm10_v2_chr4_-_119190005_119190016	0.0378146	Smad4	ENSMUST00000138395.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein 	ENSMUST00000156746.1|Ermap|ENSMUSG00000028644.10|erythroblast membrane-associated protein
mm10_v2_chr6_-_72958465_72958496	0.0350149	Smad4	ENSMUST00000114050.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr2_+_152226839_152226908	0.0331107	Smad4	ENSMUST00000099224.3|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000124791.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide 	ENSMUST00000133119.1|Csnk2a1|ENSMUSG00000074698.4|casein kinase 2, alpha 1 polypeptide
mm10_v2_chr19_+_4097392_4097415	0.0317861	Smad4	ENSMUST00000174514.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2 	ENSMUST00000174149.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2
mm10_v2_chr17_+_24352037_24352149	0.0302603	Smad4	ENSMUST00000079594.5|Abca3|ENSMUSG00000024130.9|ATP-binding cassette, sub-family A (ABC1), member 3
mm10_v2_chr3_+_36552600_36552677	0.0256292	Smad4	ENSMUST00000029269.5|Exosc9|ENSMUSG00000027714.5|exosome component 9 	ENSMUST00000136890.1|Exosc9|ENSMUSG00000027714.5|exosome component 9
mm10_v2_chr13_-_23934156_23934225	0.0246456	Smad4	ENSMUST00000052776.2|Hist1h2ba|ENSMUSG00000050799.2|histone cluster 1, H2ba
mm10_v2_chr17_+_34263209_34263256	0.0131852	Smad4	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr1_+_72583245_72583282	0.0117372	Smad4	ENSMUST00000145868.1|Smarcal1|ENSMUSG00000039354.10|SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 	ENSMUST00000133123.1|Smarcal1|ENSMUSG00000039354.10|SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 	ENSMUST00000047615.8|Smarcal1|ENSMUSG00000039354.10|SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
mm10_v2_chr11_-_106159902_106159927	0.00673581	Smad4	ENSMUST00000064545.4|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr12_+_36381519_36381594	0.00238308	Smad4	ENSMUST00000062041.5|Ispd|ENSMUSG00000043153.5|isoprenoid synthase domain containing
mm10_v2_chrX_-_38564519_38564555	0.00238306	Smad4	ENSMUST00000016681.8|Cul4b|ENSMUSG00000031095.9|cullin 4B
