mm9_v1_chr7_-_111001598_111001720	14.3508	LHX3,4.p2	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr7_-_56892061_56892218	5.83831	LHX3,4.p2	BC082541|Dbx1|13172|developing brain homeobox 1	NM_001005232|Dbx1|13172|developing brain homeobox 1	S75837|Dbx1|13172|developing brain homeobox 1
mm9_v1_chr12_+_30219982_30220081	3.93192	LHX3,4.p2	AK049624|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr9_-_71743854_71743929	3.04108	LHX3,4.p2	AK135376|Tcf12|21406|transcription factor 12	AK132002|Tcf12|21406|transcription factor 12	AK133958|Tcf12|21406|transcription factor 12	AK078415|Tcf12|21406|transcription factor 12
mm9_v1_chr10_+_101621491_101621538	1.86946	LHX3,4.p2	NM_001162368|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	AK015051|4930402I19Rik|73798|RIKEN cDNA 4930402I19 gene
mm9_v1_chr15_-_103045710_103045798	1.8256	LHX3,4.p2	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr14_-_111154292_111154370	1.79092	LHX3,4.p2	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr12_+_30219769_30219800	1.75071	LHX3,4.p2	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr2_+_61642509_61642690	1.66611	LHX3,4.p2	BC052737|Tbr1|21375|T-box brain gene 1	NM_009322|Tbr1|21375|T-box brain gene 1	AK158835|Tbr1|21375|T-box brain gene 1	BC058399|Tbr1|21375|T-box brain gene 1	U49251|Tbr1|21375|T-box brain gene 1
mm9_v1_chr9_+_96159123_96159160	1.55315	LHX3,4.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr15_-_56526052_56526100	1.45936	LHX3,4.p2	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr1_-_42749940_42749978	1.40756	LHX3,4.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr17_+_34729159_34729288	1.39174	LHX3,4.p2	AK159623|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC010287|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC062147|Pbx2|18515|pre B-cell leukemia transcription factor 2
mm9_v1_chr9_+_96159666_96159703	1.26358	LHX3,4.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr2_-_65405546_65405588	1.18202	LHX3,4.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr3_-_49561168_49561243	0.993593	LHX3,4.p2	AF416735|Pcdh18|73173|protocadherin 18	AK173204|Pcdh18|73173|protocadherin 18	BC052198|Pcdh18|73173|protocadherin 18	AK036560|Pcdh18|73173|protocadherin 18	AK032820|Pcdh18|73173|protocadherin 18	NM_130448|Pcdh18|73173|protocadherin 18
mm9_v1_chr15_-_76983985_76984241	0.977361	LHX3,4.p2	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr3_+_127336055_127336062	0.943	LHX3,4.p2	AK143190|Neurog2|11924|neurogenin 2	BC055743|Neurog2|11924|neurogenin 2	NM_009718|Neurog2|11924|neurogenin 2
mm9_v1_chr1_-_128634766_128634787	0.942468	LHX3,4.p2	AK083792|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr6_+_38331516_38331524	0.935688	LHX3,4.p2	AK035185|Ttc26|264134|tetratricopeptide repeat domain 26	BC066060|Ttc26|264134|tetratricopeptide repeat domain 26	NM_153600|Ttc26|264134|tetratricopeptide repeat domain 26	BC031513|Ttc26|264134|tetratricopeptide repeat domain 26	BC066087|Ttc26|264134|tetratricopeptide repeat domain 26
mm9_v1_chrX_-_103207106_103207254	0.934337	LHX3,4.p2	AK144696|Magt1|67075|magnesium transporter 1	AK012185|Magt1|67075|magnesium transporter 1	AK013243|Magt1|67075|magnesium transporter 1	AK136622|Magt1|67075|magnesium transporter 1	BC003881|Magt1|67075|magnesium transporter 1	AK018623|Magt1|67075|magnesium transporter 1	AK010320|Magt1|67075|magnesium transporter 1	DQ000005|Magt1|67075|magnesium transporter 1	NM_001190409|Magt1|67075|magnesium transporter 1	NM_025952|Magt1|67075|magnesium transporter 1
mm9_v1_chr6_+_37820779_37820898	0.920467	LHX3,4.p2	AK080890|Trim24|21848|tripartite motif-containing 24	NM_145076|Trim24|21848|tripartite motif-containing 24	S78219|Trim24|21848|tripartite motif-containing 24	S78221|Trim24|21848|tripartite motif-containing 24	AK084870|Trim24|21848|tripartite motif-containing 24	BC056959|Trim24|21848|tripartite motif-containing 24
mm9_v1_chr4_-_109960078_109960115	0.890672	LHX3,4.p2	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr3_+_17695743_17695745	0.854437	LHX3,4.p2	AK046405|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene	AK032443|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene
mm9_v1_chr3_-_66100663_66100758	0.848997	LHX3,4.p2	AK164725|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AB085187|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_145820|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	BC075649|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chr13_-_76081244_76081314	0.830297	LHX3,4.p2	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr5_+_19413335_19413335	0.806826	LHX3,4.p2	AK147530|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_001170745|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2	NM_015823|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr3_-_86352170_86352368	0.782607	LHX3,4.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr17_+_78907402_78907511	0.779354	LHX3,4.p2	AK158117|Vit|74199|vitrin	NM_001197028|Vit|74199|vitrin	NM_028813|Vit|74199|vitrin	BC034120|Vit|74199|vitrin	AF454755|Vit|74199|vitrin	AK013193|Vit|74199|vitrin	AK051606|Vit|74199|vitrin
mm9_v1_chr14_+_65885454_65885579	0.771155	LHX3,4.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr7_+_108966826_108966826	0.759101	LHX3,4.p2	NM_008887|Phox2a|11859|paired-like homeobox 2a
mm9_v1_chrY_+_347036_347061	0.748659	LHX3,4.p2	AK012186|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	AK153974|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	AK009448|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	AJ006584|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	BC043656|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	NM_012011|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	BC031450|Eif2s3y|26908|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
mm9_v1_chr11_+_62389048_62389081	0.731784	LHX3,4.p2	AK134052|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2
mm9_v1_chr14_-_109313298_109313300	0.716664	LHX3,4.p2	AK144290|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr4_-_33010429_33010479	0.635964	LHX3,4.p2	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr9_+_108241599_108241672	0.590897	LHX3,4.p2	AK150548|Gpx1|14775|glutathione peroxidase 1	AK002245|Gpx1|14775|glutathione peroxidase 1	AK010999|Gpx1|14775|glutathione peroxidase 1	AK011019|Gpx1|14775|glutathione peroxidase 1	AK028171|Gpx1|14775|glutathione peroxidase 1	AK154833|Gpx1|14775|glutathione peroxidase 1	AK160388|Gpx1|14775|glutathione peroxidase 1	NM_008160|Gpx1|14775|glutathione peroxidase 1	BC086649|Gpx1|14775|glutathione peroxidase 1
mm9_v1_chr13_-_54652983_54653158	0.577367	LHX3,4.p2	AK216925|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK206564|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK215484|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK216083|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK218676|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene
mm9_v1_chr1_-_173957407_173957430	0.575095	LHX3,4.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chrX_-_6765768_6765839	0.557832	LHX3,4.p2	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr12_-_42212538_42212554	0.544035	LHX3,4.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr12_-_99816091_99816149	0.540824	LHX3,4.p2	BC132487|Kcnk10|72258|potassium channel, subfamily K, member 10	BC137869|Kcnk10|72258|potassium channel, subfamily K, member 10	AK082153|Kcnk10|72258|potassium channel, subfamily K, member 10	NM_029911|Kcnk10|72258|potassium channel, subfamily K, member 10
mm9_v1_chr14_+_75855788_75855788	0.539866	LHX3,4.p2	BC147762|Siah3|380918|seven in absentia homolog 3 (Drosophila)	BC147764|Siah3|380918|seven in absentia homolog 3 (Drosophila)	NM_001128093|Siah3|380918|seven in absentia homolog 3 (Drosophila)
mm9_v1_chr5_-_5265981_5266073	0.539274	LHX3,4.p2	AK083269|Cdk14|18647|cyclin-dependent kinase 14	AK139386|Cdk14|18647|cyclin-dependent kinase 14	BC068134|Cdk14|18647|cyclin-dependent kinase 14	AK138437|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr7_+_16633755_16633793	0.534947	LHX3,4.p2	AK008102|2010004M13Rik|76511|RIKEN cDNA 2010004M13 gene
mm9_v1_chr2_+_22924699_22924786	0.519094	LHX3,4.p2	BC084584|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr11_+_87032504_87032509	0.496709	LHX3,4.p2	AK004018|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr12_+_25659777_25659836	0.491708	LHX3,4.p2	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr3_-_84024766_84024812	0.48163	LHX3,4.p2	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chrX_-_147091911_147092125	0.47189	LHX3,4.p2	AK047777|Tro|56191|trophinin	AB036783|Tro|56191|trophinin	AF288605|Tro|56191|trophinin	AF288606|Tro|56191|trophinin	NM_001002272|Tro|56191|trophinin	NM_019548|Tro|56191|trophinin	BC075630|Tro|56191|trophinin
mm9_v1_chr18_+_37854011_37854154	0.467549	LHX3,4.p2	AK043161|Pcdhga5|93713|protocadherin gamma subfamily A, 5	BC057404|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AK043491|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AY013799|Pcdhga5|93713|protocadherin gamma subfamily A, 5	NM_033588|Pcdhga5|93713|protocadherin gamma subfamily A, 5
mm9_v1_chr2_-_28771940_28771959	0.466745	LHX3,4.p2	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr6_+_5340417_5340708	0.461722	LHX3,4.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr9_-_22064292_22064338	0.456858	LHX3,4.p2	AK032725|Zfp599|235048|zinc finger protein 599	BC050092|Zfp599|235048|zinc finger protein 599	NM_181419|Zfp599|235048|zinc finger protein 599
mm9_v1_chr5_-_114292851_114293254	0.453015	LHX3,4.p2	AK201602|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr10_-_26095736_26095813	0.452261	LHX3,4.p2	BC082309|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK031398|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr1_-_97564064_97564129	0.43549	LHX3,4.p2	AK041723|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AK003690|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr10_-_127613494_127613534	0.433282	LHX3,4.p2	BC021627|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AB026583|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK207205|Rbms2|56516|RNA binding motif, single stranded interacting protein 2	AK054482|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr17_-_32946797_32946863	0.419756	LHX3,4.p2	BC052046|Zfp811|240063|zinc finger protein 811	NM_183177|Zfp811|240063|zinc finger protein 811
mm9_v1_chr6_+_103460834_103460869	0.416226	LHX3,4.p2	AK040765|Chl1|12661|cell adhesion molecule with homology to L1CAM	NM_007697|Chl1|12661|cell adhesion molecule with homology to L1CAM
mm9_v1_chr3_+_122122640_122122910	0.41614	LHX3,4.p2	AK158241|Bcar3|29815|breast cancer anti-estrogen resistance 3	NM_013867|Bcar3|29815|breast cancer anti-estrogen resistance 3	BC023930|Bcar3|29815|breast cancer anti-estrogen resistance 3	AF179566|Bcar3|29815|breast cancer anti-estrogen resistance 3	AK167578|Bcar3|29815|breast cancer anti-estrogen resistance 3	AK143894|Bcar3|29815|breast cancer anti-estrogen resistance 3
mm9_v1_chr3_+_66789621_66789657	0.415264	LHX3,4.p2	AK168539|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC038303|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK004742|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK169340|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC027501|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC083123|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr5_-_123271207_123271281	0.408346	LHX3,4.p2	AK152528|Anapc5|59008|anaphase-promoting complex subunit 5	BC010339|Anapc5|59008|anaphase-promoting complex subunit 5	AK013978|Anapc5|59008|anaphase-promoting complex subunit 5	AK031432|Anapc5|59008|anaphase-promoting complex subunit 5	AK168135|Anapc5|59008|anaphase-promoting complex subunit 5
mm9_v1_chr1_+_134088010_134088033	0.396125	LHX3,4.p2	AK144269|Lemd1|213409|LEM domain containing 1	NM_001033250|Lemd1|213409|LEM domain containing 1	BC115462|Lemd1|213409|LEM domain containing 1	BC115463|Lemd1|213409|LEM domain containing 1	BC066109|Lemd1|213409|LEM domain containing 1
mm9_v1_chr3_+_32335072_32335127	0.38913	LHX3,4.p2	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr7_-_77511242_77511282	0.385746	LHX3,4.p2	AK012573|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK012322|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr6_+_51494591_51494699	0.384271	LHX3,4.p2	AK152004|Snx10|71982|sorting nexin 10
mm9_v1_chr7_+_73194834_73194897	0.383198	LHX3,4.p2	AF008223|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6
mm9_v1_chr6_-_128380651_128380781	0.373531	LHX3,4.p2	
mm9_v1_chr2_+_35413977_35414092	0.370831	LHX3,4.p2	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chrX_+_90920450_90920749	0.368535	LHX3,4.p2	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr6_-_42660031_42660117	0.362431	LHX3,4.p2	AK083917|Fam115a|77574|family with sequence similarity 115, member A	AK132148|Fam115a|77574|family with sequence similarity 115, member A	AK173013|Fam115a|77574|family with sequence similarity 115, member A	AK020704|Fam115a|77574|family with sequence similarity 115, member A	AK014379|Fam115a|77574|family with sequence similarity 115, member A
mm9_v1_chr16_-_11220854_11220973	0.361863	LHX3,4.p2	AK218484|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr11_+_59120429_59120467	0.354029	LHX3,4.p2	AK087490|Wnt9a|216795|wingless-type MMTV integration site 9A	NM_139298|Wnt9a|216795|wingless-type MMTV integration site 9A	BC066165|Wnt9a|216795|wingless-type MMTV integration site 9A	AB072311|Wnt9a|216795|wingless-type MMTV integration site 9A
mm9_v1_chr1_+_12682572_12682637	0.350066	LHX3,4.p2	AK028285|Sulf1|240725|sulfatase 1	AK045002|Sulf1|240725|sulfatase 1
mm9_v1_chr7_+_74792295_74792398	0.34925	LHX3,4.p2	AK086049|Ttc23|67009|tetratricopeptide repeat domain 23	AK165626|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168475|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168476|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168477|Ttc23|67009|tetratricopeptide repeat domain 23	NM_025905|Ttc23|67009|tetratricopeptide repeat domain 23	AK141754|Ttc23|67009|tetratricopeptide repeat domain 23	BC038179|Ttc23|67009|tetratricopeptide repeat domain 23	AK005431|Ttc23|67009|tetratricopeptide repeat domain 23	AK084269|Ttc23|67009|tetratricopeptide repeat domain 23	AK166555|Ttc23|67009|tetratricopeptide repeat domain 23	AK166613|Ttc23|67009|tetratricopeptide repeat domain 23
mm9_v1_chr14_-_96918064_96918252	0.344914	LHX3,4.p2	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr5_+_104631633_104631713	0.34162	LHX3,4.p2	AK132177|Dmp1|13406|dentin matrix protein 1	AK157973|Dmp1|13406|dentin matrix protein 1	NM_016779|Dmp1|13406|dentin matrix protein 1	U65020|Dmp1|13406|dentin matrix protein 1	BC113753|Dmp1|13406|dentin matrix protein 1
mm9_v1_chr1_-_135557925_135557932	0.339753	LHX3,4.p2	BC066163|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chrX_+_166123130_166123181	0.337299	LHX3,4.p2	AK160120|Mid1|17318|midline 1	NM_010797|Mid1|17318|midline 1	Y14848|Mid1|17318|midline 1
mm9_v1_chr3_-_115956312_115956401	0.336097	LHX3,4.p2	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chr6_+_7505070_7505199	0.334721	LHX3,4.p2	D17584|Tac1|21333|tachykinin 1	NM_009311|Tac1|21333|tachykinin 1	BC117081|Tac1|21333|tachykinin 1	BC119122|Tac1|21333|tachykinin 1	BC144737|Tac1|21333|tachykinin 1
mm9_v1_chr11_+_85322997_85323115	0.334282	LHX3,4.p2	AK192083|Bcas3|192197|breast carcinoma amplified sequence 3
mm9_v1_chr2_+_174171943_174171964	0.333813	LHX3,4.p2	
mm9_v1_chr14_-_71107810_71107841	0.330073	LHX3,4.p2	AY550930|Xpo7|65246|exportin 7	AK143729|Xpo7|65246|exportin 7
mm9_v1_chrX_+_103222548_103222685	0.33001	LHX3,4.p2	AK017506|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK033254|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_001109757|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_009726|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK155643|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK171563|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK172209|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U03434|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U71091|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	BC141395|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide
mm9_v1_chr11_+_57985140_57985189	0.318674	LHX3,4.p2	NM_175001|Mrpl22|216767|mitochondrial ribosomal protein L22	AK077615|Mrpl22|216767|mitochondrial ribosomal protein L22	BC061191|Mrpl22|216767|mitochondrial ribosomal protein L22	AK086913|Mrpl22|216767|mitochondrial ribosomal protein L22	AK164417|Mrpl22|216767|mitochondrial ribosomal protein L22
mm9_v1_chr11_+_93905557_93905590	0.315989	LHX3,4.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr7_+_130267661_130267769	0.313963	LHX3,4.p2	AK147327|Tnrc6a|233833|trinucleotide repeat containing 6a	AK008599|Tnrc6a|233833|trinucleotide repeat containing 6a	BC026849|Tnrc6a|233833|trinucleotide repeat containing 6a	AK083848|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr8_+_42416046_42416071	0.305907	LHX3,4.p2	AK040482|Pcm1|18536|pericentriolar material 1
mm9_v1_chr13_+_21454688_21454753	0.305495	LHX3,4.p2	AK129138|Zscan12|22758|zinc finger and SCAN domain containing 12	NM_016684|Zscan12|22758|zinc finger and SCAN domain containing 12	AK075886|Zscan12|22758|zinc finger and SCAN domain containing 12	AK139837|Zscan12|22758|zinc finger and SCAN domain containing 12	AK142005|Zscan12|22758|zinc finger and SCAN domain containing 12	BC027041|Zscan12|22758|zinc finger and SCAN domain containing 12
mm9_v1_chr18_-_67020125_67020125	0.300165	LHX3,4.p2	AK136793|Mc4r|17202|melanocortin 4 receptor	NM_016977|Mc4r|17202|melanocortin 4 receptor
mm9_v1_chr10_+_101621712_101621712	0.299983	LHX3,4.p2	AK032009|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	NM_001162369|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm9_v1_chr8_+_73282270_73282383	0.299035	LHX3,4.p2	
mm9_v1_chr11_+_60351469_60351612	0.29858	LHX3,4.p2	AK053695|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK049130|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK169700|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	BC052076|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK053700|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK162072|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)	AK163294|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chr7_+_77510266_77510283	0.295991	LHX3,4.p2	AK045070|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr3_+_125106995_125107008	0.294044	LHX3,4.p2	AF520870|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	AK140992|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	NM_022565|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm9_v1_chr4_+_122731563_122731731	0.293872	LHX3,4.p2	AK188355|Trit1|66966|tRNA isopentenyltransferase 1	AK219389|Trit1|66966|tRNA isopentenyltransferase 1	AK189511|Trit1|66966|tRNA isopentenyltransferase 1
mm9_v1_chr15_-_24957039_24957112	0.292574	LHX3,4.p2	AK033069|Gm2824|100040529|predicted gene 2824	AK083927|Gm2824|100040529|predicted gene 2824
mm9_v1_chr1_+_141398282_141398309	0.29248	LHX3,4.p2	NM_031164|F13b|14060|coagulation factor XIII, beta subunit	AK149397|F13b|14060|coagulation factor XIII, beta subunit	D10071|F13b|14060|coagulation factor XIII, beta subunit	BC030166|F13b|14060|coagulation factor XIII, beta subunit
mm9_v1_chr5_-_108026906_108026906	0.291906	LHX3,4.p2	AK034160|Glmn|170823|glomulin, FKBP associated protein	NM_001161738|Glmn|170823|glomulin, FKBP associated protein
mm9_v1_chr2_+_162760505_162760606	0.288389	LHX3,4.p2	
mm9_v1_chr18_+_59222034_59222186	0.286291	LHX3,4.p2	NM_001167925|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	NM_173759|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	AK080452|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	AK048493|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	BC075669|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene
mm9_v1_chr14_-_109313333_109313374	0.286117	LHX3,4.p2	AK173296|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr1_+_34364633_34364780	0.285802	LHX3,4.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr17_-_34999068_34999191	0.285181	LHX3,4.p2	AK149531|Cfb|14962|complement factor B	BC005451|Cfb|14962|complement factor B	AK098094|Cfb|14962|complement factor B	AK149573|Cfb|14962|complement factor B	M57890|Cfb|14962|complement factor B	AK151246|Cfb|14962|complement factor B
mm9_v1_chr7_-_29678773_29678890	0.283219	LHX3,4.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chr1_-_72330767_72330887	0.280598	LHX3,4.p2	AF232011|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	BC013530|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AF242204|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK090327|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK135714|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK162100|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK010260|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	NM_023523|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase
mm9_v1_chr1_+_169528838_169528848	0.280254	LHX3,4.p2	M84819|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr10_+_36226612_36226726	0.27912	LHX3,4.p2	NM_001081208|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147490|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147493|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC150973|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC158004|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	AK086098|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm9_v1_chr9_-_44610921_44611015	0.277537	LHX3,4.p2	BC021608|Ttc36|192653|tetratricopeptide repeat domain 36	AK165811|Ttc36|192653|tetratricopeptide repeat domain 36	BC026825|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr13_-_76081343_76081394	0.27607	LHX3,4.p2	AK081381|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr9_-_44611055_44611072	0.275789	LHX3,4.p2	AK149384|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr6_-_90611092_90611239	0.274925	LHX3,4.p2	BC043918|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr9_+_21330620_21330720	0.272944	LHX3,4.p2	NM_001198794|AB124611|382062|cDNA sequence AB124611	NM_206536|AB124611|382062|cDNA sequence AB124611	AK154442|AB124611|382062|cDNA sequence AB124611	AK168311|AB124611|382062|cDNA sequence AB124611	AK170200|AB124611|382062|cDNA sequence AB124611	AK162293|AB124611|382062|cDNA sequence AB124611	AK137593|AB124611|382062|cDNA sequence AB124611	AB124611|AB124611|382062|cDNA sequence AB124611	AB124612|AB124611|382062|cDNA sequence AB124611
mm9_v1_chr16_-_55934909_55934966	0.272401	LHX3,4.p2	BC065773|Cep97|74201|centrosomal protein 97	AK079884|Cep97|74201|centrosomal protein 97	AK154885|Cep97|74201|centrosomal protein 97	AK012971|Cep97|74201|centrosomal protein 97	AK080249|Cep97|74201|centrosomal protein 97	BC067049|Cep97|74201|centrosomal protein 97	NM_001159364|Cep97|74201|centrosomal protein 97	NM_001159365|Cep97|74201|centrosomal protein 97	NM_001159366|Cep97|74201|centrosomal protein 97	NM_028815|Cep97|74201|centrosomal protein 97	AK040079|Cep97|74201|centrosomal protein 97
mm9_v1_chr10_-_102698899_102698955	0.272053	LHX3,4.p2	AK158531|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	BC051400|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	AK015687|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	NM_001163559|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	NM_029134|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1
mm9_v1_chr6_+_51494521_51494550	0.269628	LHX3,4.p2	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr10_+_41249215_41249327	0.264106	LHX3,4.p2	
mm9_v1_chr5_-_136384495_136384514	0.261122	LHX3,4.p2	
mm9_v1_chr1_-_173957316_173957398	0.258684	LHX3,4.p2	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr11_-_98862163_98862321	0.257892	LHX3,4.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr18_+_65048630_65048682	0.25769	LHX3,4.p2	AK042621|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr4_+_95224197_95224229	0.257046	LHX3,4.p2	NM_001113412|Fggy|75578|FGGY carbohydrate kinase domain containing	AK138439|Fggy|75578|FGGY carbohydrate kinase domain containing	AK082737|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr2_+_110561733_110561771	0.254072	LHX3,4.p2	AY198336|Muc15|269328|mucin 15	AK052840|Muc15|269328|mucin 15	AK142590|Muc15|269328|mucin 15	NM_172979|Muc15|269328|mucin 15	BC094506|Muc15|269328|mucin 15	BC116796|Muc15|269328|mucin 15	BC119176|Muc15|269328|mucin 15
mm9_v1_chr10_-_117252126_117252166	0.253136	LHX3,4.p2	
mm9_v1_chr5_-_5265598_5265717	0.25248	LHX3,4.p2	AK087398|Cdk14|18647|cyclin-dependent kinase 14	AK165149|Cdk14|18647|cyclin-dependent kinase 14	U62391|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr19_-_7501451_7501548	0.251355	LHX3,4.p2	AK211707|Rtn3|20168|reticulon 3
mm9_v1_chr4_-_116228531_116228547	0.249467	LHX3,4.p2	AK041960|Tmem69|230657|transmembrane protein 69	BC106178|Tmem69|230657|transmembrane protein 69	NM_177670|Tmem69|230657|transmembrane protein 69
mm9_v1_chr5_-_149320857_149320933	0.247029	LHX3,4.p2	AK197397|Ubl3|24109|ubiquitin-like 3	AK204771|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr2_-_163450863_163450871	0.245546	LHX3,4.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr2_+_153035426_153035671	0.240627	LHX3,4.p2	AK194607|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK208683|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr12_+_73885063_73885417	0.240425	LHX3,4.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr4_-_136158570_136158663	0.240139	LHX3,4.p2	AK129170|Kdm1a|99982|lysine (K)-specific demethylase 1A	BC059885|Kdm1a|99982|lysine (K)-specific demethylase 1A	NM_133872|Kdm1a|99982|lysine (K)-specific demethylase 1A
mm9_v1_chrX_+_139997806_139997811	0.239349	LHX3,4.p2	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr18_-_57134974_57135060	0.236323	LHX3,4.p2	BC116244|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC116245|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	BC127172|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK021208|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK053997|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	AK140255|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene	NM_029909|C330018D20Rik|77422|RIKEN cDNA C330018D20 gene
mm9_v1_chr13_-_4608352_4608430	0.235244	LHX3,4.p2	U68535|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK002507|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK007924|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK028605|Akr1e1|56043|aldo-keto reductase family 1, member E1	BC012692|Akr1e1|56043|aldo-keto reductase family 1, member E1	NM_018859|Akr1e1|56043|aldo-keto reductase family 1, member E1
mm9_v1_chr7_-_35597470_35597729	0.23376	LHX3,4.p2	AK005217|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AF308145|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	BC051124|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK038952|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK051290|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	NM_175140|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
mm9_v1_chr7_+_13615892_13615926	0.231958	LHX3,4.p2	AK193916|Trim28|21849|tripartite motif-containing 28	AK194102|Trim28|21849|tripartite motif-containing 28	AK190398|Trim28|21849|tripartite motif-containing 28	AK177374|Trim28|21849|tripartite motif-containing 28	AK189444|Trim28|21849|tripartite motif-containing 28	AK190056|Trim28|21849|tripartite motif-containing 28	AK190280|Trim28|21849|tripartite motif-containing 28	AK192048|Trim28|21849|tripartite motif-containing 28	AK196455|Trim28|21849|tripartite motif-containing 28	AK196856|Trim28|21849|tripartite motif-containing 28
mm9_v1_chr4_+_98697606_98697678	0.230607	LHX3,4.p2	AK149450|Angptl3|30924|angiopoietin-like 3	NM_013913|Angptl3|30924|angiopoietin-like 3	AK149555|Angptl3|30924|angiopoietin-like 3	BC019491|Angptl3|30924|angiopoietin-like 3	AF162224|Angptl3|30924|angiopoietin-like 3
mm9_v1_chr3_+_66023884_66023904	0.229927	LHX3,4.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr2_+_152106052_152106158	0.229472	LHX3,4.p2	AK042898|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr14_-_109313447_109313461	0.227496	LHX3,4.p2	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr10_+_19890580_19890589	0.227129	LHX3,4.p2	AK138516|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene	AK138667|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene
mm9_v1_chr19_-_25036047_25036105	0.22703	LHX3,4.p2	BC018472|Cbwd1|226043|COBW domain containing 1	AK076027|Cbwd1|226043|COBW domain containing 1	BC053745|Cbwd1|226043|COBW domain containing 1	AK132291|Cbwd1|226043|COBW domain containing 1	NM_146097|Cbwd1|226043|COBW domain containing 1
mm9_v1_chr8_+_13869640_13869740	0.226586	LHX3,4.p2	NM_181854|Zfp828|101994|zinc finger protein 828	AK132164|Zfp828|101994|zinc finger protein 828	AK170835|Zfp828|101994|zinc finger protein 828	AK139963|Zfp828|101994|zinc finger protein 828	AK133990|Zfp828|101994|zinc finger protein 828	BC028991|Zfp828|101994|zinc finger protein 828	AK129444|Zfp828|101994|zinc finger protein 828
mm9_v1_chr19_+_13439119_13439119	0.225987	LHX3,4.p2	NM_146691|Olfr1467|258686|olfactory receptor 1467
mm9_v1_chr12_-_74147683_74147691	0.225316	LHX3,4.p2	BC023304|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr12_+_10397567_10397637	0.222549	LHX3,4.p2	NM_023697|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	AF303831|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	BC092299|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	BC020094|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	AK014097|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)
mm9_v1_chr17_-_45704908_45704999	0.218008	LHX3,4.p2	
mm9_v1_chr15_+_34044603_34044618	0.216392	LHX3,4.p2	AK218970|Mtdh|67154|metadherin
mm9_v1_chr10_-_116786025_116786098	0.214751	LHX3,4.p2	AK018657|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr8_-_55809700_55809720	0.211621	LHX3,4.p2	AK013889|Wdr17|244484|WD repeat domain 17	AK020995|Wdr17|244484|WD repeat domain 17	AK044241|Wdr17|244484|WD repeat domain 17	NM_001172152|Wdr17|244484|WD repeat domain 17
mm9_v1_chr11_-_89280247_89280261	0.211557	LHX3,4.p2	BC140961|4932411E22Rik|214604|RIKEN cDNA 4932411E22 gene	AK029964|4932411E22Rik|214604|RIKEN cDNA 4932411E22 gene	NM_172534|4932411E22Rik|214604|RIKEN cDNA 4932411E22 gene
mm9_v1_chr1_-_37973274_37973337	0.210409	LHX3,4.p2	BC147562|Lyg2|332427|lysozyme G-like 2	BC147567|Lyg2|332427|lysozyme G-like 2	AK132442|Lyg2|332427|lysozyme G-like 2	NM_001033427|Lyg2|332427|lysozyme G-like 2
mm9_v1_chr7_+_18830695_18830771	0.206996	LHX3,4.p2	AK029010|Mill1|266815|MHC I like leukocyte 1	NM_153749|Mill1|266815|MHC I like leukocyte 1	BC110547|Mill1|266815|MHC I like leukocyte 1	BC110548|Mill1|266815|MHC I like leukocyte 1	AK030695|Mill1|266815|MHC I like leukocyte 1
mm9_v1_chr4_+_109015660_109015680	0.206126	LHX3,4.p2	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr13_-_76155834_76156159	0.20386	LHX3,4.p2	AK029602|Rfesd|218341|Rieske (Fe-S) domain containing	AK163574|Rfesd|218341|Rieske (Fe-S) domain containing	AK040255|Rfesd|218341|Rieske (Fe-S) domain containing	AK083705|Rfesd|218341|Rieske (Fe-S) domain containing	NM_178916|Rfesd|218341|Rieske (Fe-S) domain containing	NM_001131068|Rfesd|218341|Rieske (Fe-S) domain containing	BC030381|Rfesd|218341|Rieske (Fe-S) domain containing	NM_001131069|Rfesd|218341|Rieske (Fe-S) domain containing
mm9_v1_chr6_-_54543167_54543172	0.202966	LHX3,4.p2	AK030620|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr17_-_45707285_45707350	0.201482	LHX3,4.p2	U89426|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr1_-_176851918_176851937	0.200279	LHX3,4.p2	AK161827|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	BC079905|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr9_+_104472090_104472120	0.199405	LHX3,4.p2	AK043692|Cpne4|74020|copine IV	AK014396|Cpne4|74020|copine IV	BC043087|Cpne4|74020|copine IV	BC063081|Cpne4|74020|copine IV	NM_028719|Cpne4|74020|copine IV
mm9_v1_chr16_-_20610796_20610837	0.199274	LHX3,4.p2	BC031893|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	AK090067|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	AK149510|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)	NM_145939|Alg3|208624|asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)
mm9_v1_chr14_+_27852148_27852279	0.199044	LHX3,4.p2	AF494210|Il17rd|171463|interleukin 17 receptor D	NM_134437|Il17rd|171463|interleukin 17 receptor D	BC138629|Il17rd|171463|interleukin 17 receptor D	BC066804|Il17rd|171463|interleukin 17 receptor D	AF459444|Il17rd|171463|interleukin 17 receptor D
mm9_v1_chr4_+_43460181_43460289	0.198492	LHX3,4.p2	
mm9_v1_chr3_+_31801595_31801757	0.197745	LHX3,4.p2	AK012400|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC046227|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC058957|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	NM_028231|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm9_v1_chr6_-_3444484_3444497	0.196734	LHX3,4.p2	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr1_-_128727208_128727208	0.196681	LHX3,4.p2	NM_001081756|Nckap5|210356|NCK-associated protein 5	NM_176957|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr10_+_89280918_89280988	0.195642	LHX3,4.p2	AK079985|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK046432|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK008586|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr3_-_103546233_103546253	0.193219	LHX3,4.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr4_+_45310018_45310039	0.192065	LHX3,4.p2	AK011746|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	AK030465|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	NM_027266|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3
mm9_v1_chr15_-_101573522_101573539	0.192007	LHX3,4.p2	BC125346|Krt71|56735|keratin 71	BC125348|Krt71|56735|keratin 71	AB033744|Krt71|56735|keratin 71	AB100413|Krt71|56735|keratin 71	AY033497|Krt71|56735|keratin 71	NM_019956|Krt71|56735|keratin 71	AK003610|Krt71|56735|keratin 71	AK003704|Krt71|56735|keratin 71
mm9_v1_chr12_+_111723922_111723992	0.189767	LHX3,4.p2	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr7_-_20218609_20218735	0.189294	LHX3,4.p2	
mm9_v1_chr2_+_65683823_65683911	0.188747	LHX3,4.p2	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr13_-_84204320_84204376	0.187879	LHX3,4.p2	AK082072|LOC553095|553095|hypothetical LOC553095
mm9_v1_chr3_+_88342459_88342597	0.186023	LHX3,4.p2	AK012557|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr5_-_122907269_122907331	0.183558	LHX3,4.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr9_+_78039786_78039851	0.182912	LHX3,4.p2	AK008400|Gsta4|14860|glutathione S-transferase, alpha 4	AK008189|Gsta4|14860|glutathione S-transferase, alpha 4	AK011841|Gsta4|14860|glutathione S-transferase, alpha 4	AK019271|Gsta4|14860|glutathione S-transferase, alpha 4	AK009668|Gsta4|14860|glutathione S-transferase, alpha 4	AK010098|Gsta4|14860|glutathione S-transferase, alpha 4	AK008193|Gsta4|14860|glutathione S-transferase, alpha 4	AK008490|Gsta4|14860|glutathione S-transferase, alpha 4	AK011177|Gsta4|14860|glutathione S-transferase, alpha 4	BC012639|Gsta4|14860|glutathione S-transferase, alpha 4	L06047|Gsta4|14860|glutathione S-transferase, alpha 4
mm9_v1_chr12_+_60114357_60114456	0.181004	LHX3,4.p2	AK005928|Sip1|66603|survival of motor neuron protein interacting protein 1	AK007515|Sip1|66603|survival of motor neuron protein interacting protein 1	NM_025656|Sip1|66603|survival of motor neuron protein interacting protein 1	AK013414|Sip1|66603|survival of motor neuron protein interacting protein 1	BC053424|Sip1|66603|survival of motor neuron protein interacting protein 1
mm9_v1_chr17_-_31266539_31266557	0.179915	LHX3,4.p2	BC011042|Tff3|21786|trefoil factor 3, intestinal	AK008538|Tff3|21786|trefoil factor 3, intestinal	D38410|Tff3|21786|trefoil factor 3, intestinal	NM_011575|Tff3|21786|trefoil factor 3, intestinal
mm9_v1_chr11_+_115106897_115107042	0.179025	LHX3,4.p2	
mm9_v1_chr17_+_12571494_12571524	0.178333	LHX3,4.p2	BC057186|Plg|18815|plasminogen	AK132254|Plg|18815|plasminogen	J04766|Plg|18815|plasminogen	AK040840|Plg|18815|plasminogen
mm9_v1_chr2_+_109120894_109121025	0.177953	LHX3,4.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr1_+_12682510_12682540	0.17608	LHX3,4.p2	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr15_-_10967722_10967745	0.174415	LHX3,4.p2	AK084001|Rxfp3|239336|relaxin family peptide receptor 3	NM_178717|Rxfp3|239336|relaxin family peptide receptor 3	AK043414|Rxfp3|239336|relaxin family peptide receptor 3
mm9_v1_chr2_+_36086059_36086082	0.174059	LHX3,4.p2	AK134163|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AY547265|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	CT010314|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chrX_-_140367467_140367853	0.171661	LHX3,4.p2	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr13_+_42776161_42776182	0.168825	LHX3,4.p2	AK047654|Phactr1|218194|phosphatase and actin regulator 1	AY993932|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr6_-_85894613_85894649	0.168748	LHX3,4.p2	AK089506|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
mm9_v1_chr9_-_82826139_82826181	0.167235	LHX3,4.p2	BC068022|Phip|83946|pleckstrin homology domain interacting protein
mm9_v1_chr12_+_91570569_91570694	0.167139	LHX3,4.p2	AJ006804|Nrxn3|18191|neurexin III
mm9_v1_chr4_+_5726856_5726857	0.167096	LHX3,4.p2	AK049898|Fam110b|242297|family with sequence similarity 110, member B
mm9_v1_chr9_-_16182674_16182674	0.166639	LHX3,4.p2	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr4_-_34754469_34754554	0.166597	LHX3,4.p2	AB221605|Zfp292|30046|zinc finger protein 292
mm9_v1_chr15_+_81575277_81575277	0.165492	LHX3,4.p2	NM_001081016|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr17_-_74242984_74243003	0.165169	LHX3,4.p2	BC003997|Xdh|22436|xanthine dehydrogenase
mm9_v1_chr7_-_110976438_110976438	0.164359	LHX3,4.p2	M10524|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr9_-_39411708_39411856	0.162552	LHX3,4.p2	AK049098|AW551984|244810|expressed sequence AW551984	NM_178737|AW551984|244810|expressed sequence AW551984	BC061211|AW551984|244810|expressed sequence AW551984
mm9_v1_chr12_-_32398730_32398790	0.162108	LHX3,4.p2	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr10_+_23614493_23614678	0.161563	LHX3,4.p2	NM_011704|Vnn1|22361|vanin 1	AK145984|Vnn1|22361|vanin 1	AK002773|Vnn1|22361|vanin 1	AK167427|Vnn1|22361|vanin 1	AJ132098|Vnn1|22361|vanin 1	BC019203|Vnn1|22361|vanin 1
mm9_v1_chr12_+_82049290_82049329	0.161493	LHX3,4.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr18_+_53335914_53335980	0.158717	LHX3,4.p2	AK145840|Snx2|67804|sorting nexin 2
mm9_v1_chr8_-_106966899_106966946	0.158277	LHX3,4.p2	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr6_-_51413182_51413233	0.15756	LHX3,4.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr17_+_21520684_21520739	0.156557	LHX3,4.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr9_-_105372402_105372478	0.155707	LHX3,4.p2	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr15_-_90764873_90764944	0.15538	LHX3,4.p2	AK052821|Kif21a|16564|kinesin family member 21A	AK047208|Kif21a|16564|kinesin family member 21A
mm9_v1_chr2_-_72931338_72931457	0.152769	LHX3,4.p2	
mm9_v1_chr2_+_174276095_174276197	0.151406	LHX3,4.p2	BC147687|Tubb1|545486|tubulin, beta 1	BC147698|Tubb1|545486|tubulin, beta 1	NM_001080971|Tubb1|545486|tubulin, beta 1	BC147322|Tubb1|545486|tubulin, beta 1	BC147323|Tubb1|545486|tubulin, beta 1
mm9_v1_chr8_-_3467624_3467679	0.151381	LHX3,4.p2	BC062135|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK007848|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK007582|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	NM_026951|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK165461|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	BC024096|Pex11c|69129|peroxisomal biogenesis factor 11 gamma
mm9_v1_chr15_-_98783909_98783984	0.151086	LHX3,4.p2	M13445|Tuba1a|22142|tubulin, alpha 1A	NM_011653|Tuba1a|22142|tubulin, alpha 1A	AK077529|Tuba1a|22142|tubulin, alpha 1A	BC056169|Tuba1a|22142|tubulin, alpha 1A	BC083344|Tuba1a|22142|tubulin, alpha 1A	BC083343|Tuba1a|22142|tubulin, alpha 1A	BC085256|Tuba1a|22142|tubulin, alpha 1A	BC083345|Tuba1a|22142|tubulin, alpha 1A	AK145404|Tuba1a|22142|tubulin, alpha 1A	AK146983|Tuba1a|22142|tubulin, alpha 1A	AK167687|Tuba1a|22142|tubulin, alpha 1A	AK168762|Tuba1a|22142|tubulin, alpha 1A	AK169610|Tuba1a|22142|tubulin, alpha 1A	AK164335|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr4_-_109125244_109125254	0.150871	LHX3,4.p2	AK139182|Rnf11|29864|ring finger protein 11
mm9_v1_chr7_+_117161821_117161836	0.149569	LHX3,4.p2	AK079903|Ipo7|233726|importin 7	AK148820|Ipo7|233726|importin 7	AK169981|Ipo7|233726|importin 7
mm9_v1_chr4_+_137762192_137762206	0.149017	LHX3,4.p2	AK005120|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3
mm9_v1_chr7_-_67242493_67242503	0.148352	LHX3,4.p2	NM_001082961|Snrpn|20646|small nuclear ribonucleoprotein N
mm9_v1_chr1_-_24012436_24012480	0.147951	LHX3,4.p2	AK003789|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	BC028981|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK004301|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK007909|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK015824|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	NM_026503|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene
mm9_v1_chrX_-_22797942_22797952	0.147617	LHX3,4.p2	AK013399|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr8_+_116657473_116657573	0.147541	LHX3,4.p2	AK088191|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024437|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024446|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AF338424|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK004924|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC069843|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK011172|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC033046|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK008824|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm9_v1_chr5_-_23012407_23012525	0.14618	LHX3,4.p2	AK044922|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK201776|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr3_+_116265890_116265995	0.145978	LHX3,4.p2	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr10_-_80170648_80170694	0.144741	LHX3,4.p2	
mm9_v1_chrX_-_91368427_91368500	0.144448	LHX3,4.p2	BC028506|Zfx|22764|zinc finger protein X-linked	M32308|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr11_+_79153388_79153393	0.144335	LHX3,4.p2	AK085050|Nf1|18015|neurofibromatosis 1	NM_010897|Nf1|18015|neurofibromatosis 1
mm9_v1_chr3_-_41546402_41546435	0.143513	LHX3,4.p2	BC043136|Sclt1|67161|sodium channel and clathrin linker 1	BC060271|Sclt1|67161|sodium channel and clathrin linker 1	AK083894|Sclt1|67161|sodium channel and clathrin linker 1	AK016469|Sclt1|67161|sodium channel and clathrin linker 1	NM_001081411|Sclt1|67161|sodium channel and clathrin linker 1
mm9_v1_chr8_+_91115856_91115922	0.143243	LHX3,4.p2	AK192443|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK193874|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr2_+_174153230_174153414	0.143143	LHX3,4.p2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chrX_+_93651684_93651766	0.142359	LHX3,4.p2	NM_001159627|Heph|15203|hephaestin	NM_181273|Heph|15203|hephaestin	AK081330|Heph|15203|hephaestin	AK129194|Heph|15203|hephaestin	AK032895|Heph|15203|hephaestin	AK086923|Heph|15203|hephaestin
mm9_v1_chrX_-_136406046_136406192	0.141973	LHX3,4.p2	BC132153|Morc4|75746|microrchidia 4	BC132497|Morc4|75746|microrchidia 4	BC098483|Morc4|75746|microrchidia 4	AK017472|Morc4|75746|microrchidia 4	AK048519|Morc4|75746|microrchidia 4	AK164017|Morc4|75746|microrchidia 4	AK053895|Morc4|75746|microrchidia 4	AK032807|Morc4|75746|microrchidia 4	NM_001193309|Morc4|75746|microrchidia 4	NM_029413|Morc4|75746|microrchidia 4
mm9_v1_chr17_+_45704145_45704512	0.141584	LHX3,4.p2	AK211181|Slc35b2|73836|solute carrier family 35, member B2	AK212100|Slc35b2|73836|solute carrier family 35, member B2	AK207266|Slc35b2|73836|solute carrier family 35, member B2	AK212091|Slc35b2|73836|solute carrier family 35, member B2	AK214463|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr1_-_132558108_132558210	0.139725	LHX3,4.p2	AK136735|C4bp|12269|complement component 4 binding protein	AK162345|C4bp|12269|complement component 4 binding protein	AB094486|C4bp|12269|complement component 4 binding protein	AK149477|C4bp|12269|complement component 4 binding protein	BC012257|C4bp|12269|complement component 4 binding protein	AB094485|C4bp|12269|complement component 4 binding protein	NM_007576|C4bp|12269|complement component 4 binding protein	AK050344|C4bp|12269|complement component 4 binding protein	AK149468|C4bp|12269|complement component 4 binding protein	M17122|C4bp|12269|complement component 4 binding protein
mm9_v1_chr5_+_9266137_9266216	0.138783	LHX3,4.p2	AK079644|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK165601|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK081041|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK034358|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK045969|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK048738|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK133610|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	NM_172706|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC132290|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC138012|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene
mm9_v1_chr10_+_97110043_97110069	0.138041	LHX3,4.p2	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr9_+_92502076_92502169	0.138003	LHX3,4.p2	
mm9_v1_chr16_+_20692792_20692908	0.137639	LHX3,4.p2	
mm9_v1_chr16_-_98169926_98169967	0.137308	LHX3,4.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr5_-_114292548_114292630	0.137109	LHX3,4.p2	
mm9_v1_chr3_+_88987108_88987146	0.136866	LHX3,4.p2	BC068123|Fam189b|68521|family with sequence similarity 189, member B	BC088990|Fam189b|68521|family with sequence similarity 189, member B	NM_001014995|Fam189b|68521|family with sequence similarity 189, member B
mm9_v1_chr2_+_135883963_135884022	0.136741	LHX3,4.p2	AK018222|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene	AK045946|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene
mm9_v1_chr6_+_136467315_136467378	0.135894	LHX3,4.p2	AK082697|Atf7ip|54343|activating transcription factor 7 interacting protein	AK167542|Atf7ip|54343|activating transcription factor 7 interacting protein	BC048827|Atf7ip|54343|activating transcription factor 7 interacting protein	AK134252|Atf7ip|54343|activating transcription factor 7 interacting protein	BC052460|Atf7ip|54343|activating transcription factor 7 interacting protein	NM_019426|Atf7ip|54343|activating transcription factor 7 interacting protein	AJ132702|Atf7ip|54343|activating transcription factor 7 interacting protein	BC022714|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr6_+_13821522_13821573	0.135368	LHX3,4.p2	AK143417|1110019D14Rik|76311|RIKEN cDNA 1110019D14 gene	AK003812|1110019D14Rik|76311|RIKEN cDNA 1110019D14 gene
mm9_v1_chr19_-_39537540_39537568	0.13489	LHX3,4.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr11_-_31571811_31571918	0.133827	LHX3,4.p2	NM_001024919|Bod1|69556|biorientation of chromosomes in cell division 1	BC116435|Bod1|69556|biorientation of chromosomes in cell division 1	BC116436|Bod1|69556|biorientation of chromosomes in cell division 1	BC128508|Bod1|69556|biorientation of chromosomes in cell division 1	BC128509|Bod1|69556|biorientation of chromosomes in cell division 1
mm9_v1_chr17_+_64245366_64245425	0.133378	LHX3,4.p2	NM_001037997|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	U76762|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AF286537|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr2_-_63022140_63022343	0.133023	LHX3,4.p2	AJ291608|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK052366|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK043768|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK034003|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_133207|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm9_v1_chr18_-_39572137_39572180	0.132977	LHX3,4.p2	AK171439|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK163857|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr9_-_15105965_15105999	0.132569	LHX3,4.p2	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr17_+_3482314_3482460	0.132416	LHX3,4.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr11_+_75565381_75565439	0.132231	LHX3,4.p2	AX775993|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK192964|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK202856|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr7_-_106987766_106987861	0.131542	LHX3,4.p2	AK180141|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr15_+_81575472_81575548	0.130834	LHX3,4.p2	AK165492|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK147978|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK147484|Zc3h7b|20286|zinc finger CCCH type containing 7B	BC059923|Zc3h7b|20286|zinc finger CCCH type containing 7B	AK171949|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr7_+_148127289_148127427	0.129998	LHX3,4.p2	AK171694|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)
mm9_v1_chr8_-_75005707_75005831	0.129133	LHX3,4.p2	AK090231|Slc35e1|270066|solute carrier family 35, member E1	AK182855|Slc35e1|270066|solute carrier family 35, member E1
mm9_v1_chr11_+_93905443_93905464	0.128722	LHX3,4.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr8_-_42140113_42140147	0.12734	LHX3,4.p2	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr18_+_62708564_62708648	0.127046	LHX3,4.p2	AK039062|Spink10|328971|serine peptidase inhibitor, Kazal type 10	DQ437330|Spink10|328971|serine peptidase inhibitor, Kazal type 10	NM_177829|Spink10|328971|serine peptidase inhibitor, Kazal type 10	AK162840|Spink10|328971|serine peptidase inhibitor, Kazal type 10	BC125360|Spink10|328971|serine peptidase inhibitor, Kazal type 10	BC125362|Spink10|328971|serine peptidase inhibitor, Kazal type 10
mm9_v1_chr17_+_5343877_5344040	0.12646	LHX3,4.p2	AK049919|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK021005|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK048918|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr16_+_30065419_30065442	0.126342	LHX3,4.p2	AK133538|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	AK132536|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC018375|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC051428|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	NM_008235|Hes1|15205|hairy and enhancer of split 1 (Drosophila)
mm9_v1_chr1_-_154472199_154472354	0.126011	LHX3,4.p2	BC017678|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	NM_016846|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	U14103|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169109|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK169180|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1	AK144218|Rgl1|19731|ral guanine nucleotide dissociation stimulator,-like 1
mm9_v1_chr1_-_34496128_34496223	0.125856	LHX3,4.p2	AK162237|Ccdc115|69668|coiled-coil domain containing 115	AK154179|Ccdc115|69668|coiled-coil domain containing 115
mm9_v1_chr9_-_85637765_85637765	0.124655	LHX3,4.p2	NM_001081282|Ibtk|108837|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm9_v1_chr19_-_36763823_36763968	0.123746	LHX3,4.p2	AK142254|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chrX_-_163645313_163645419	0.123739	LHX3,4.p2	AK205579|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr17_-_45707358_45707448	0.123251	LHX3,4.p2	AK177162|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr4_-_104548965_104549005	0.123178	LHX3,4.p2	AB077296|C8a|230558|complement component 8, alpha polypeptide	AB077297|C8a|230558|complement component 8, alpha polypeptide	AB077298|C8a|230558|complement component 8, alpha polypeptide	BC027748|C8a|230558|complement component 8, alpha polypeptide	AK090245|C8a|230558|complement component 8, alpha polypeptide	AB077295|C8a|230558|complement component 8, alpha polypeptide	NM_146148|C8a|230558|complement component 8, alpha polypeptide
mm9_v1_chr12_-_55896648_55896721	0.123092	LHX3,4.p2	AK011640|Snx6|72183|sorting nexin 6	AK013158|Snx6|72183|sorting nexin 6	NM_026998|Snx6|72183|sorting nexin 6	BC061028|Snx6|72183|sorting nexin 6
mm9_v1_chr5_+_33715497_33715611	0.122665	LHX3,4.p2	
mm9_v1_chr3_+_142283605_142283716	0.122419	LHX3,4.p2	BC032882|Gbp2|14469|guanylate binding protein 2	AF077007|Gbp2|14469|guanylate binding protein 2	NM_010260|Gbp2|14469|guanylate binding protein 2	BC011336|Gbp2|14469|guanylate binding protein 2	AJ007970|Gbp2|14469|guanylate binding protein 2	BC049141|Gbp2|14469|guanylate binding protein 2	AF109168|Gbp2|14469|guanylate binding protein 2	AK150138|Gbp2|14469|guanylate binding protein 2
mm9_v1_chr9_+_35367050_35367089	0.122356	LHX3,4.p2	AK019213|Pus3|67049|pseudouridine synthase 3	AK079095|Pus3|67049|pseudouridine synthase 3	NM_023292|Pus3|67049|pseudouridine synthase 3	AK017552|Pus3|67049|pseudouridine synthase 3	BC029253|Pus3|67049|pseudouridine synthase 3
mm9_v1_chr6_-_72386442_72386506	0.122118	LHX3,4.p2	AK193673|Mat2a|232087|methionine adenosyltransferase II, alpha	AK207616|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr9_-_62644026_62644272	0.122095	LHX3,4.p2	AK078303|Fem1b|14155|feminization 1 homolog b (C. elegans)	AK160393|Fem1b|14155|feminization 1 homolog b (C. elegans)
mm9_v1_chr3_+_66023808_66023844	0.121872	LHX3,4.p2	NM_008987|Ptx3|19288|pentraxin related gene	BC022176|Ptx3|19288|pentraxin related gene
mm9_v1_chr16_+_44370127_44370136	0.121736	LHX3,4.p2	BC024956|Spice1|212514|spindle and centriole associated protein 1
mm9_v1_chr10_+_40657980_40658124	0.121653	LHX3,4.p2	AK080786|Wasf1|83767|WASP family 1
mm9_v1_chr19_+_38470458_38470592	0.120618	LHX3,4.p2	BC137663|Tmem20|240660|transmembrane protein 20	BC137664|Tmem20|240660|transmembrane protein 20	AK041618|Tmem20|240660|transmembrane protein 20	NM_175507|Tmem20|240660|transmembrane protein 20	AK030517|Tmem20|240660|transmembrane protein 20	AK171987|Tmem20|240660|transmembrane protein 20	AK052365|Tmem20|240660|transmembrane protein 20
mm9_v1_chr8_+_94190341_94190551	0.120282	LHX3,4.p2	
mm9_v1_chr7_+_134890288_134890288	0.120141	LHX3,4.p2	BC059812|Fbxl19|233902|F-box and leucine-rich repeat protein 19	NM_172748|Fbxl19|233902|F-box and leucine-rich repeat protein 19
mm9_v1_chr15_-_79192753_79193144	0.119828	LHX3,4.p2	AK196372|Tmem184b|223693|transmembrane protein 184b	BC026687|Tmem184b|223693|transmembrane protein 184b	AK210195|Tmem184b|223693|transmembrane protein 184b
mm9_v1_chr8_+_93400479_93400562	0.119485	LHX3,4.p2	
mm9_v1_chr7_+_139802303_139802366	0.119436	LHX3,4.p2	NM_029609|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	AK009207|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase	BC065789|Lhpp|76429|phospholysine phosphohistidine inorganic pyrophosphate phosphatase
mm9_v1_chr11_-_69648350_69648356	0.11771	LHX3,4.p2	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chrX_-_43809499_43809524	0.117563	LHX3,4.p2	NM_001085510|Gm4987|245405|predicted gene 4987
mm9_v1_chr7_-_11242322_11242322	0.117494	LHX3,4.p2	NM_001110020|Gm6900|628596|predicted gene 6900
mm9_v1_chr1_-_4350323_4350394	0.117465	LHX3,4.p2	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr4_+_134483092_134483164	0.116906	LHX3,4.p2	
mm9_v1_chr8_+_74675802_74675827	0.116609	LHX3,4.p2	
mm9_v1_chr6_+_77192839_77192971	0.116589	LHX3,4.p2	BC027803|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr6_-_39327637_39327722	0.11589	LHX3,4.p2	BC099673|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK076213|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK077836|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK167716|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	BC005744|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK145242|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	NM_028123|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm9_v1_chr9_-_119734573_119734593	0.115311	LHX3,4.p2	AF118044|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha	NM_011887|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha
mm9_v1_chr4_-_147247909_147248045	0.115013	LHX3,4.p2	
mm9_v1_chr7_-_110976314_110976437	0.114679	LHX3,4.p2	AB020013|Hbb-b1|15129|hemoglobin, beta adult major chain	AB020014|Hbb-b2|15130|hemoglobin, beta adult minor chain	AB020015|Hbb-b1|15129|hemoglobin, beta adult major chain	AB020016|Hbb-b2|15130|hemoglobin, beta adult minor chain	AB020017|Hbb-b2|15130|hemoglobin, beta adult minor chain	AB364477|Hbb-b1|15129|hemoglobin, beta adult major chain	AB364478|Hbb-b2|15130|hemoglobin, beta adult minor chain	AF149782|Hbb-b2|15130|hemoglobin, beta adult minor chain
mm9_v1_chr3_+_68673489_68673528	0.114483	LHX3,4.p2	NM_001167996|1110032F04Rik|68725|RIKEN cDNA 1110032F04 gene
mm9_v1_chr8_-_19893102_19893120	0.114232	LHX3,4.p2	AK030539|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr5_-_100465086_100465197	0.114152	LHX3,4.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr7_-_87550315_87550316	0.11415	LHX3,4.p2	AK020294|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_001081454|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr4_-_147183894_147183948	0.113653	LHX3,4.p2	NM_001127189|Gm13157|100041677|predicted gene 13157	AK011687|2610036A22Rik|70190|RIKEN cDNA 2610036A22 gene
mm9_v1_chr12_+_90191833_90191842	0.113035	LHX3,4.p2	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chr12_-_105711324_105711536	0.112974	LHX3,4.p2	AB221548|Gsc|14836|goosecoid homeobox	Y13150|Gsc|14836|goosecoid homeobox	NM_010351|Gsc|14836|goosecoid homeobox	Y13149|Gsc|14836|goosecoid homeobox	X99239|Gsc|14836|goosecoid homeobox
mm9_v1_chr19_+_46730385_46730488	0.112226	LHX3,4.p2	
mm9_v1_chr12_-_52849709_52849723	0.111704	LHX3,4.p2	AK077185|Hectd1|207304|HECT domain containing 1
mm9_v1_chr16_+_78931190_78931192	0.110786	LHX3,4.p2	AK031063|Chodl|246048|chondrolectin	AK076523|Chodl|246048|chondrolectin	AK140910|Chodl|246048|chondrolectin	NM_139134|Chodl|246048|chondrolectin
mm9_v1_chr9_+_120868808_120869094	0.110762	LHX3,4.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr7_-_150835497_150835570	0.109733	LHX3,4.p2	AJ278265|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AY046551|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AK012838|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	NM_023680|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	BC076592|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AY165626|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AY165627|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22
mm9_v1_chrX_+_132424640_132424733	0.10946	LHX3,4.p2	AK214737|Bhlhb9|70237|basic helix-loop-helix domain containing, class B9
mm9_v1_chr8_+_71626352_71626466	0.108772	LHX3,4.p2	AK187885|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK196120|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205248|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207339|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207413|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209086|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK210829|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr8_+_86247034_86247066	0.107645	LHX3,4.p2	
mm9_v1_chr1_-_30920095_30920100	0.10744	LHX3,4.p2	BC011226|Phf3|213109|PHD finger protein 3	BC032205|Phf3|213109|PHD finger protein 3	BC137913|Phf3|213109|PHD finger protein 3	NM_001081080|Phf3|213109|PHD finger protein 3
mm9_v1_chr9_+_69855789_69855998	0.107358	LHX3,4.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr11_-_6333725_6333827	0.10731	LHX3,4.p2	AK178770|H2afv|77605|H2A histone family, member V
mm9_v1_chr9_+_65246294_65246323	0.107139	LHX3,4.p2	NM_001033158|Rasl12|70784|RAS-like, family 12	NM_001162923|Rasl12|70784|RAS-like, family 12	AK087136|Rasl12|70784|RAS-like, family 12	BC125036|Rasl12|70784|RAS-like, family 12
mm9_v1_chr17_+_17539635_17539669	0.10661	LHX3,4.p2	BC049574|Lix1|66643|limb expression 1 homolog (chicken)	NM_025681|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr9_+_120860017_120860081	0.105956	LHX3,4.p2	AK135743|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	BC043078|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr2_+_87642546_87642547	0.105671	LHX3,4.p2	BC140120|Olfr1143|258290|olfactory receptor 1143	BC140161|Olfr1143|258290|olfactory receptor 1143	BC140202|Olfr1143|258290|olfactory receptor 1143	NM_146293|Olfr1143|258290|olfactory receptor 1143
mm9_v1_chr18_-_46440360_46440503	0.105456	LHX3,4.p2	AK028188|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK170240|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	BC141021|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK081731|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	NM_172627|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit
mm9_v1_chr4_+_154932761_154932805	0.105074	LHX3,4.p2	AK194739|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK203879|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK205062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr5_-_92378648_92378678	0.104945	LHX3,4.p2	AK007543|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr16_-_16829386_16829548	0.104649	LHX3,4.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr12_-_55896488_55896574	0.104188	LHX3,4.p2	BC025911|Snx6|72183|sorting nexin 6
mm9_v1_chr3_-_88214554_88214644	0.104072	LHX3,4.p2	
mm9_v1_chr6_-_119913623_119913750	0.102983	LHX3,4.p2	BC146009|Wnk1|232341|WNK lysine deficient protein kinase 1	BC146011|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr19_+_10271150_10271263	0.102622	LHX3,4.p2	AK191356|Fads1|76267|fatty acid desaturase 1	AK199659|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr10_-_124765435_124765590	0.102325	LHX3,4.p2	BC117803|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC117804|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC126960|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	BC089606|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	AF058054|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7	NM_011391|Slc16a7|20503|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm9_v1_chr1_+_72330942_72330988	0.102286	LHX3,4.p2	AK034935|Tmem169|271711|transmembrane protein 169	AK043681|Tmem169|271711|transmembrane protein 169	NM_175564|Tmem169|271711|transmembrane protein 169	AK084021|Tmem169|271711|transmembrane protein 169
mm9_v1_chr7_-_110976499_110976501	0.101859	LHX3,4.p2	S71555|Hbb-b1|15129|hemoglobin, beta adult major chain	S71558|Hbb-b1|15129|hemoglobin, beta adult major chain	S71559|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr3_+_55586431_55586482	0.101597	LHX3,4.p2	NM_010750|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK043552|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF040945|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF228913|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK032114|Mab21l1|17116|mab-21-like 1 (C. elegans)	BC014750|Mab21l1|17116|mab-21-like 1 (C. elegans)
mm9_v1_chr3_+_159502646_159502709	0.101067	LHX3,4.p2	BC075615|Wls|68151|wntless homolog (Drosophila)	NM_026582|Wls|68151|wntless homolog (Drosophila)	AK029053|Wls|68151|wntless homolog (Drosophila)	AK044810|Wls|68151|wntless homolog (Drosophila)	AK019886|Wls|68151|wntless homolog (Drosophila)	AK029104|Wls|68151|wntless homolog (Drosophila)	AK029315|Wls|68151|wntless homolog (Drosophila)	AK031444|Wls|68151|wntless homolog (Drosophila)	AK049842|Wls|68151|wntless homolog (Drosophila)	AK128912|Wls|68151|wntless homolog (Drosophila)	AK159207|Wls|68151|wntless homolog (Drosophila)	AK159977|Wls|68151|wntless homolog (Drosophila)	AK077407|Wls|68151|wntless homolog (Drosophila)
mm9_v1_chr19_+_26822892_26822948	0.101	LHX3,4.p2	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr5_+_7960430_7960493	0.100471	LHX3,4.p2	AK040760|Steap4|117167|STEAP family member 4	AJ319746|Steap4|117167|STEAP family member 4	BC006651|Steap4|117167|STEAP family member 4	NM_054098|Steap4|117167|STEAP family member 4	AY029778|Steap4|117167|STEAP family member 4
mm9_v1_chr11_-_106175797_106175983	0.100296	LHX3,4.p2	CT010358|Cd79b|15985|CD79B antigen	AK143573|Cd79b|15985|CD79B antigen	BC012226|Cd79b|15985|CD79B antigen	NM_008339|Cd79b|15985|CD79B antigen	J03857|Cd79b|15985|CD79B antigen
mm9_v1_chr5_+_73398142_73398230	0.100017	LHX3,4.p2	AK087479|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	AK149202|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	NM_173403|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC132529|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4	BC138048|Slc10a4|231290|solute carrier family 10 (sodium/bile acid cotransporter family), member 4
mm9_v1_chr12_-_86097486_86097537	0.0994279	LHX3,4.p2	
mm9_v1_chr6_+_42236683_42236858	0.0987416	LHX3,4.p2	AK036735|Clcn1|12723|chloride channel 1	NM_013491|Clcn1|12723|chloride channel 1	BC114336|Clcn1|12723|chloride channel 1	AY046403|Clcn1|12723|chloride channel 1	AY046404|Clcn1|12723|chloride channel 1
mm9_v1_chr2_+_87366184_87366358	0.0985274	LHX3,4.p2	BC090254|Srp9|27058|signal recognition particle 9
mm9_v1_chr8_+_89240252_89240401	0.0966451	LHX3,4.p2	AK197630|Lonp2|66887|lon peptidase 2, peroxisomal
mm9_v1_chr18_+_77365613_77365672	0.0965235	LHX3,4.p2	AK078097|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr2_+_174171525_174171529	0.0954069	LHX3,4.p2	AK187312|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK215851|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr10_+_128143313_128143342	0.0951106	LHX3,4.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chr10_+_69487700_69487703	0.0950546	LHX3,4.p2	AK033919|Ank3|11735|ankyrin 3, epithelial	AK036171|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr11_+_43534658_43534687	0.094926	LHX3,4.p2	AK086604|Pwwp2a|70802|PWWP domain containing 2A	AK039984|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr2_-_124949149_124949396	0.0943527	LHX3,4.p2	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr18_+_4375607_4375646	0.093199	LHX3,4.p2	BC057643|Mtpap|67440|mitochondrial poly(A) polymerase	AK135537|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr2_-_32279522_32279542	0.0928532	LHX3,4.p2	BC022114|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	BC019978|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr7_-_71518926_71518980	0.0928424	LHX3,4.p2	BC116270|Fan1|330554|FANCD2/FANCI-associated nuclease 1	BC116271|Fan1|330554|FANCD2/FANCI-associated nuclease 1	AK077918|Fan1|330554|FANCD2/FANCI-associated nuclease 1	NM_177893|Fan1|330554|FANCD2/FANCI-associated nuclease 1
mm9_v1_chr15_+_31154137_31154175	0.0926937	LHX3,4.p2	NM_146057|Dap|223453|death-associated protein	AK171259|Dap|223453|death-associated protein	AK152884|Dap|223453|death-associated protein
mm9_v1_chr2_-_155899631_155899762	0.090935	LHX3,4.p2	AK075784|Cpne1|266692|copine I
mm9_v1_chr6_-_34126949_34127110	0.0906594	LHX3,4.p2	AK042150|Slc35b4|58246|solute carrier family 35, member B4	AK029046|Slc35b4|58246|solute carrier family 35, member B4	BC033512|Slc35b4|58246|solute carrier family 35, member B4	AK033913|Slc35b4|58246|solute carrier family 35, member B4	BC016275|Slc35b4|58246|solute carrier family 35, member B4	AK045791|Slc35b4|58246|solute carrier family 35, member B4	AK138591|Slc35b4|58246|solute carrier family 35, member B4	AB041549|Slc35b4|58246|solute carrier family 35, member B4	NM_021435|Slc35b4|58246|solute carrier family 35, member B4	AK029969|Slc35b4|58246|solute carrier family 35, member B4
mm9_v1_chr9_-_103595136_103595138	0.0905762	LHX3,4.p2	AK132350|Tmem108|81907|transmembrane protein 108
mm9_v1_chr2_-_52414072_52414117	0.0903081	LHX3,4.p2	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr6_-_13789847_13789902	0.0899252	LHX3,4.p2	BC065154|Gpr85|64450|G protein-coupled receptor 85	NM_145066|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr7_-_125629996_125630002	0.0891464	LHX3,4.p2	AK164927|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK081844|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr11_-_76308483_76308518	0.0887055	LHX3,4.p2	AK052216|Abr|109934|active BCR-related gene
mm9_v1_chr18_+_32996878_32997001	0.0882493	LHX3,4.p2	AK156822|Wdr36|225348|WD repeat domain 36	NM_001110015|Wdr36|225348|WD repeat domain 36	NM_001110016|Wdr36|225348|WD repeat domain 36	NM_144863|Wdr36|225348|WD repeat domain 36	AK045396|Wdr36|225348|WD repeat domain 36	BC022132|Wdr36|225348|WD repeat domain 36	BC094453|Wdr36|225348|WD repeat domain 36	AK171683|Wdr36|225348|WD repeat domain 36	AK077545|Wdr36|225348|WD repeat domain 36	AK172377|Wdr36|225348|WD repeat domain 36	AK140019|Wdr36|225348|WD repeat domain 36	AK172054|Wdr36|225348|WD repeat domain 36	AK041763|Wdr36|225348|WD repeat domain 36	BC025809|Wdr36|225348|WD repeat domain 36	AK155965|Wdr36|225348|WD repeat domain 36
mm9_v1_chr15_-_66644199_66644302	0.0882384	LHX3,4.p2	AJ131777|Sla|20491|src-like adaptor	AK037901|Sla|20491|src-like adaptor	AK137954|Sla|20491|src-like adaptor
mm9_v1_chr4_-_148500769_148500849	0.0880985	LHX3,4.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr9_-_119213954_119213965	0.0875785	LHX3,4.p2	AK031790|Oxsr1|108737|oxidative-stress responsive 1	AK075837|Oxsr1|108737|oxidative-stress responsive 1	NM_133985|Oxsr1|108737|oxidative-stress responsive 1
mm9_v1_chr9_+_40076800_40077017	0.0874975	LHX3,4.p2	NM_001083917|Scn3b|235281|sodium channel, voltage-gated, type III, beta	NM_153522|Scn3b|235281|sodium channel, voltage-gated, type III, beta	NM_178227|Scn3b|235281|sodium channel, voltage-gated, type III, beta	BC058636|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK049286|Scn3b|235281|sodium channel, voltage-gated, type III, beta	BC058083|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK051805|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK173115|Scn3b|235281|sodium channel, voltage-gated, type III, beta	AK049747|Scn3b|235281|sodium channel, voltage-gated, type III, beta
mm9_v1_chr1_+_19093102_19093153	0.0874083	LHX3,4.p2	AK132112|Tcfap2d|226896|transcription factor AP-2, delta	NM_153154|Tcfap2d|226896|transcription factor AP-2, delta	BC152324|Tcfap2d|226896|transcription factor AP-2, delta	BC152325|Tcfap2d|226896|transcription factor AP-2, delta
mm9_v1_chr12_+_104626888_104626975	0.0872107	LHX3,4.p2	NM_026580|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK076336|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	NM_001177841|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC049551|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK016449|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK160505|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK019830|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006346|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006469|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006054|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC052409|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2
mm9_v1_chr7_+_138589597_138589692	0.0870592	LHX3,4.p2	AK078636|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain
mm9_v1_chr16_-_84955086_84955166	0.0868306	LHX3,4.p2	AK190928|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr8_-_81345034_81345050	0.0867912	LHX3,4.p2	AK158236|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_001191004|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_030145|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr19_+_60887452_60887529	0.0863137	LHX3,4.p2	NM_001167829|Fam45a|67894|family with sequence similarity 45, member A	NM_026437|Fam45a|67894|family with sequence similarity 45, member A	AK004643|Fam45a|67894|family with sequence similarity 45, member A	AK168474|Fam45a|67894|family with sequence similarity 45, member A	AK171767|Fam45a|67894|family with sequence similarity 45, member A	AK145769|Fam45a|67894|family with sequence similarity 45, member A	AK007867|Fam45a|67894|family with sequence similarity 45, member A	BC013514|Fam45a|67894|family with sequence similarity 45, member A	AK202624|Fam45a|67894|family with sequence similarity 45, member A
mm9_v1_chr11_-_98300224_98300319	0.0861556	LHX3,4.p2	AK002959|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK009922|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK007795|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK041314|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	BC021589|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	NM_025559|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene
mm9_v1_chr13_+_113657736_113657889	0.0858526	LHX3,4.p2	
mm9_v1_chr3_-_107877121_107877254	0.0857722	LHX3,4.p2	AK196006|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr8_-_23016871_23016903	0.0838536	LHX3,4.p2	BC099849|Defb11|246081|defensin beta 11	AJ437646|Defb11|246081|defensin beta 11	NM_139221|Defb11|246081|defensin beta 11
mm9_v1_chr12_+_25741653_25741728	0.0833362	LHX3,4.p2	BC059030|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chrM_+_7009_7016	0.0833149	LHX3,4.p2	AF378830|COX2|17709|cytochrome c oxidase subunit II	AK131586|COX2|17709|cytochrome c oxidase subunit II
mm9_v1_chr5_-_122906470_122906515	0.0830829	LHX3,4.p2	AK081191|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr18_+_50355539_50355658	0.0829677	LHX3,4.p2	
mm9_v1_chr1_-_140071818_140071883	0.0824286	LHX3,4.p2	BC131655|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK088215|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	BC028512|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	M14342|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK154893|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK171802|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK054056|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_001111316|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_011210|Ptprc|19264|protein tyrosine phosphatase, receptor type, C
mm9_v1_chr2_+_131012677_131012814	0.0795657	LHX3,4.p2	BC048164|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	NM_001111075|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	NM_023117|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK153903|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK043730|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK004836|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK157397|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	BC057568|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	S93521|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)
mm9_v1_chr2_+_74707394_74707441	0.0792311	LHX3,4.p2	AK207939|Mtx2|53375|metaxin 2	AK212612|Mtx2|53375|metaxin 2	AK216047|Mtx2|53375|metaxin 2
mm9_v1_chr13_+_41012969_41013020	0.0785213	LHX3,4.p2	AY236875|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_133219|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK019924|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	BC054845|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr14_-_34195326_34195332	0.0785204	LHX3,4.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr13_-_100114593_100114662	0.0781965	LHX3,4.p2	BC016563|Ptcd2|68927|pentatricopeptide repeat domain 2	BC025110|Ptcd2|68927|pentatricopeptide repeat domain 2	NM_026873|Ptcd2|68927|pentatricopeptide repeat domain 2	AK004502|Ptcd2|68927|pentatricopeptide repeat domain 2	AK144396|Ptcd2|68927|pentatricopeptide repeat domain 2
mm9_v1_chr10_+_20059547_20059574	0.0781291	LHX3,4.p2	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr9_+_54711492_54711604	0.0778304	LHX3,4.p2	NM_022655|Ireb2|64602|iron responsive element binding protein 2	BC044665|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr16_-_26371711_26371924	0.0776054	LHX3,4.p2	CT010299|Cldn1|12737|claudin 1	EU076705|Cldn1|12737|claudin 1	BC008536|Cldn1|12737|claudin 1	AF072127|Cldn1|12737|claudin 1	AK054207|Cldn1|12737|claudin 1	BC002003|Cldn1|12737|claudin 1	AK036762|Cldn1|12737|claudin 1	AK028428|Cldn1|12737|claudin 1	AK081601|Cldn1|12737|claudin 1	AK036780|Cldn1|12737|claudin 1	AK040604|Cldn1|12737|claudin 1	NM_016674|Cldn1|12737|claudin 1
mm9_v1_chr5_+_90919758_90919765	0.0773825	LHX3,4.p2	AK075972|Afp|11576|alpha fetoprotein	AK076197|Afp|11576|alpha fetoprotein	AK146513|Afp|11576|alpha fetoprotein	AK146524|Afp|11576|alpha fetoprotein	AK168426|Afp|11576|alpha fetoprotein	AK168574|Afp|11576|alpha fetoprotein	AK168751|Afp|11576|alpha fetoprotein	AK169046|Afp|11576|alpha fetoprotein	AK169054|Afp|11576|alpha fetoprotein	AK010934|Afp|11576|alpha fetoprotein	AK076053|Afp|11576|alpha fetoprotein	AK145975|Afp|11576|alpha fetoprotein	AK168576|Afp|11576|alpha fetoprotein	AK168883|Afp|11576|alpha fetoprotein	AK169147|Afp|11576|alpha fetoprotein	AK167549|Afp|11576|alpha fetoprotein	V00743|Afp|11576|alpha fetoprotein
mm9_v1_chr9_+_44206431_44206438	0.0773541	LHX3,4.p2	AK003620|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AF080469|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chr11_-_106642357_106642481	0.0771987	LHX3,4.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr9_-_123626642_123626742	0.0771642	LHX3,4.p2	AK046515|Lztfl1|93730|leucine zipper transcription factor-like 1	BC037045|Lztfl1|93730|leucine zipper transcription factor-like 1	AJ297352|Lztfl1|93730|leucine zipper transcription factor-like 1	BC098224|Lztfl1|93730|leucine zipper transcription factor-like 1	BC026840|Lztfl1|93730|leucine zipper transcription factor-like 1	NM_033322|Lztfl1|93730|leucine zipper transcription factor-like 1	AK054003|Lztfl1|93730|leucine zipper transcription factor-like 1	AK157770|Lztfl1|93730|leucine zipper transcription factor-like 1	AK145263|Lztfl1|93730|leucine zipper transcription factor-like 1	AK030068|Lztfl1|93730|leucine zipper transcription factor-like 1	AK029671|Lztfl1|93730|leucine zipper transcription factor-like 1	AK041091|Lztfl1|93730|leucine zipper transcription factor-like 1	AK147312|Lztfl1|93730|leucine zipper transcription factor-like 1
mm9_v1_chr13_-_98786061_98786107	0.0771115	LHX3,4.p2	AK048676|Rgnef|110596|Rho-guanine nucleotide exchange factor
mm9_v1_chr3_+_89234182_89234338	0.0769586	LHX3,4.p2	AY486147|Pygo2|68911|pygopus 2
mm9_v1_chr17_-_47147501_47147513	0.0768233	LHX3,4.p2	AK083320|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK134196|C79242|98068|expressed sequence C79242
mm9_v1_chr1_-_82287067_82287145	0.0767415	LHX3,4.p2	L24563|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr7_+_17545027_17545143	0.0761876	LHX3,4.p2	AK079661|Pnmal1|71691|PNMA-like 1	BC048228|Pnmal1|71691|PNMA-like 1	NM_001007569|Pnmal1|71691|PNMA-like 1
mm9_v1_chr14_+_55506625_55506792	0.0760521	LHX3,4.p2	AK020321|Bcl2l2|12050|BCL2-like 2	AK020923|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr6_+_85418280_85418317	0.0759067	LHX3,4.p2	
mm9_v1_chr1_-_55044032_55044295	0.0756343	LHX3,4.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr16_-_16869309_16869347	0.0756325	LHX3,4.p2	BC117051|Vpreb1|22362|pre-B lymphocyte gene 1	BC119175|Vpreb1|22362|pre-B lymphocyte gene 1	BC144850|Vpreb1|22362|pre-B lymphocyte gene 1	AK010843|Vpreb1|22362|pre-B lymphocyte gene 1	AK010879|Vpreb1|22362|pre-B lymphocyte gene 1	X05556|Vpreb1|22362|pre-B lymphocyte gene 1	NM_016982|Vpreb1|22362|pre-B lymphocyte gene 1
mm9_v1_chr2_-_34916915_34916960	0.0754946	LHX3,4.p2	M35525|Hc|15139|hemolytic complement	M35526|Hc|15139|hemolytic complement	AK080166|Hc|15139|hemolytic complement	NM_010406|Hc|15139|hemolytic complement
mm9_v1_chr5_-_100391613_100391631	0.0752565	LHX3,4.p2	AK012230|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr11_-_116332384_116332670	0.0750145	LHX3,4.p2	AK217597|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1	AK217106|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1	AK193081|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1	AK182083|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1
mm9_v1_chr15_+_80453912_80453951	0.074382	LHX3,4.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr4_-_48486214_48486324	0.0733451	LHX3,4.p2	AK011904|Tex10|269536|testis expressed gene 10	BC151176|Tex10|269536|testis expressed gene 10	BC151177|Tex10|269536|testis expressed gene 10	AK132870|Tex10|269536|testis expressed gene 10	NM_172304|Tex10|269536|testis expressed gene 10	AK013375|Tex10|269536|testis expressed gene 10	AK141288|Tex10|269536|testis expressed gene 10
mm9_v1_chr2_+_36086008_36086055	0.0727204	LHX3,4.p2	AK138432|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK046457|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK142741|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK163609|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170664|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK160886|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC005573|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC023322|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	M34141|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170414|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr18_+_37839910_37840111	0.0726743	LHX3,4.p2	BC054741|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	BC098367|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	AY013804|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	NM_033574|Pcdhgb1|93699|protocadherin gamma subfamily B, 1
mm9_v1_chr10_+_127927057_127927088	0.072348	LHX3,4.p2	
mm9_v1_chr3_+_88125464_88125582	0.0720972	LHX3,4.p2	
mm9_v1_chr5_+_119214935_119215085	0.071895	LHX3,4.p2	AK083611|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr18_-_9995729_9995838	0.0715575	LHX3,4.p2	AK206781|Usp14|59025|ubiquitin specific peptidase 14	AK209109|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr19_+_5474686_5474769	0.0711304	LHX3,4.p2	NM_021474|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	AK075585|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	NM_001164352|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	AF109122|Efemp2|58859|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm9_v1_chr17_+_28829512_28829512	0.0708189	LHX3,4.p2	AK151348|Mapk14|26416|mitogen-activated protein kinase 14	AK153025|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168513|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr10_-_77734341_77734501	0.0703321	LHX3,4.p2	
mm9_v1_chr18_+_35966147_35966251	0.0692621	LHX3,4.p2	AK075844|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr4_+_15941112_15941180	0.0686749	LHX3,4.p2	
mm9_v1_chr5_+_117827904_117828056	0.0686698	LHX3,4.p2	AK195234|Wsb2|59043|WD repeat and SOCS box-containing 2	AK198504|Wsb2|59043|WD repeat and SOCS box-containing 2	AK206996|Wsb2|59043|WD repeat and SOCS box-containing 2	AK210681|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chrX_+_132758579_132758588	0.0685982	LHX3,4.p2	NM_001127169|Tceal7|100040972|transcription elongation factor A (SII)-like 7	AK003800|Tceal7|100040972|transcription elongation factor A (SII)-like 7
mm9_v1_chr7_+_138712015_138712162	0.0665548	LHX3,4.p2	AK039977|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK079742|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr10_-_80170504_80170531	0.0664951	LHX3,4.p2	AK205331|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr16_-_11137100_11137212	0.0658162	LHX3,4.p2	AK218593|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr19_-_23348307_23348371	0.0657997	LHX3,4.p2	AJ534941|Smc5|226026|structural maintenance of chromosomes 5	AK143818|Smc5|226026|structural maintenance of chromosomes 5	BC038345|Smc5|226026|structural maintenance of chromosomes 5	NM_153808|Smc5|226026|structural maintenance of chromosomes 5
mm9_v1_chr5_-_37087209_37087249	0.0655018	LHX3,4.p2	AK134363|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr6_-_116666759_116666930	0.065325	LHX3,4.p2	BC116440|Tmem72|319776|transmembrane protein 72	BC116441|Tmem72|319776|transmembrane protein 72	AK085603|Tmem72|319776|transmembrane protein 72	NM_178768|Tmem72|319776|transmembrane protein 72	AK049938|Tmem72|319776|transmembrane protein 72	AK033856|Tmem72|319776|transmembrane protein 72	BC093486|Tmem72|319776|transmembrane protein 72	AK049048|Tmem72|319776|transmembrane protein 72	AK141578|Tmem72|319776|transmembrane protein 72
mm9_v1_chr6_-_28781687_28781746	0.0652799	LHX3,4.p2	BC117833|Lrrc4|192198|leucine rich repeat containing 4	BC117834|Lrrc4|192198|leucine rich repeat containing 4	AF300458|Lrrc4|192198|leucine rich repeat containing 4	BC012209|Lrrc4|192198|leucine rich repeat containing 4	DQ177325|Lrrc4|192198|leucine rich repeat containing 4	NM_138682|Lrrc4|192198|leucine rich repeat containing 4
mm9_v1_chr3_+_68376319_68376428	0.0648795	LHX3,4.p2	BC060529|Schip1|30953|schwannomin interacting protein 1	AK021361|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr10_-_79373177_79373432	0.0639856	LHX3,4.p2	AK206142|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK206739|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK212119|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK180841|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK179327|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK207391|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218659|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218931|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr19_+_32694494_32694583	0.0638663	LHX3,4.p2	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr12_+_81216835_81216867	0.0637947	LHX3,4.p2	AK040614|1300014J16Rik|74160|RIKEN cDNA 1300014J16 gene	AK005005|1300014J16Rik|74160|RIKEN cDNA 1300014J16 gene
mm9_v1_chr13_+_55802874_55802961	0.0636543	LHX3,4.p2	BC006718|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr8_-_95603838_95603915	0.0632498	LHX3,4.p2	NM_001081372|Ces1b|382044|carboxylesterase 1B
mm9_v1_chr1_+_169528706_169528770	0.0631705	LHX3,4.p2	X66225|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr17_-_47147441_47147496	0.0630973	LHX3,4.p2	BC075642|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK147445|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	AK143202|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	NM_001177374|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2	NM_146078|Ubr2|224826|ubiquitin protein ligase E3 component n-recognin 2
mm9_v1_chr2_+_35154311_35154429	0.0629601	LHX3,4.p2	AK188287|Gsn|227753|gelsolin	AK188608|Gsn|227753|gelsolin
mm9_v1_chr15_+_101042440_101042460	0.0629065	LHX3,4.p2	AK078525|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr13_-_60278859_60278952	0.0624434	LHX3,4.p2	NM_008086|Gas1|14451|growth arrest specific 1
mm9_v1_chr1_+_74314377_74314414	0.0620701	LHX3,4.p2	AK213157|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr1_+_65233222_65233323	0.0619718	LHX3,4.p2	AK139116|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	NM_011086|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK165350|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK080527|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AF102777|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK143565|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK173077|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing
mm9_v1_chr11_+_52045464_52045596	0.0619713	LHX3,4.p2	NM_011543|Skp1a|21402|S-phase kinase-associated protein 1A	AK078330|Skp1a|21402|S-phase kinase-associated protein 1A	AK002983|Skp1a|21402|S-phase kinase-associated protein 1A	AK012498|Skp1a|21402|S-phase kinase-associated protein 1A	AK014245|Skp1a|21402|S-phase kinase-associated protein 1A	AK027909|Skp1a|21402|S-phase kinase-associated protein 1A	AK088339|Skp1a|21402|S-phase kinase-associated protein 1A	AK160198|Skp1a|21402|S-phase kinase-associated protein 1A	AK158209|Skp1a|21402|S-phase kinase-associated protein 1A	AK166673|Skp1a|21402|S-phase kinase-associated protein 1A	AK152609|Skp1a|21402|S-phase kinase-associated protein 1A	Z47088|Skp1a|21402|S-phase kinase-associated protein 1A	BC002115|Skp1a|21402|S-phase kinase-associated protein 1A	AF083214|Skp1a|21402|S-phase kinase-associated protein 1A
mm9_v1_chr4_-_56960287_56960321	0.0616688	LHX3,4.p2	AK052826|D730040F13Rik|242474|RIKEN cDNA D730040F13 gene	AK085364|D730040F13Rik|242474|RIKEN cDNA D730040F13 gene	NM_175518|D730040F13Rik|242474|RIKEN cDNA D730040F13 gene
mm9_v1_chr11_+_108811065_108811123	0.061533	LHX3,4.p2	
mm9_v1_chr1_-_164796660_164796743	0.0614372	LHX3,4.p2	BC011229|Fmo1|14261|flavin containing monooxygenase 1	NM_010231|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr18_-_35064624_35064726	0.0611625	LHX3,4.p2	AK195141|Etf1|225363|eukaryotic translation termination factor 1	AK218551|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr14_+_79915429_79915530	0.0608578	LHX3,4.p2	AK132456|Elf1|13709|E74-like factor 1	U19617|Elf1|13709|E74-like factor 1	AK156098|Elf1|13709|E74-like factor 1	BC037743|Elf1|13709|E74-like factor 1	BC027532|Elf1|13709|E74-like factor 1	BC053914|Elf1|13709|E74-like factor 1
mm9_v1_chr8_-_11199802_11199859	0.0607586	LHX3,4.p2	X92439|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr18_+_4375599_4375605	0.0603806	LHX3,4.p2	AK002680|Mtpap|67440|mitochondrial poly(A) polymerase	AK045203|Mtpap|67440|mitochondrial poly(A) polymerase	AK076565|Mtpap|67440|mitochondrial poly(A) polymerase	BC017535|Mtpap|67440|mitochondrial poly(A) polymerase	AK031070|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr15_-_98373055_98373058	0.0600329	LHX3,4.p2	AK085131|Ccnt1|12455|cyclin T1	AK052836|Ccnt1|12455|cyclin T1
mm9_v1_chr16_+_91465229_91465258	0.0599053	LHX3,4.p2	AK020819|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chrX_-_6952873_6952997	0.0598755	LHX3,4.p2	BC137612|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	AK028249|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	NM_019461|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome
mm9_v1_chr2_-_144376513_144376606	0.0597233	LHX3,4.p2	AF039563|Rbbp9|26450|retinoblastoma binding protein 9	BC050201|Rbbp9|26450|retinoblastoma binding protein 9	AK017606|Rbbp9|26450|retinoblastoma binding protein 9	BC011107|Rbbp9|26450|retinoblastoma binding protein 9	BC147814|Rbbp9|26450|retinoblastoma binding protein 9	BC147815|Rbbp9|26450|retinoblastoma binding protein 9	AK076944|Rbbp9|26450|retinoblastoma binding protein 9	NM_015754|Rbbp9|26450|retinoblastoma binding protein 9
mm9_v1_chr7_-_88638744_88638780	0.0592546	LHX3,4.p2	AK047482|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit
mm9_v1_chr7_-_110976439_110976454	0.0589505	LHX3,4.p2	AK002258|Hbb-b1|15129|hemoglobin, beta adult major chain	AK003096|Hbb-b1|15129|hemoglobin, beta adult major chain	AK003472|Hbb-b1|15129|hemoglobin, beta adult major chain	AK005442|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010902|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010980|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010981|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010991|Hbb-b1|15129|hemoglobin, beta adult major chain	AK010993|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011006|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011013|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011016|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011027|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011067|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011077|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011083|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011102|Hbb-b1|15129|hemoglobin, beta adult major chain	AK027904|Hbb-b1|15129|hemoglobin, beta adult major chain	AK088149|Hbb-b1|15129|hemoglobin, beta adult major chain	AK133714|Hbb-b1|15129|hemoglobin, beta adult major chain	AK160629|Hbb-b1|15129|hemoglobin, beta adult major chain	AK161021|Hbb-b1|15129|hemoglobin, beta adult major chain	AK165490|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168562|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168826|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168846|Hbb-b1|15129|hemoglobin, beta adult major chain	AK005490|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011069|Hbb-b1|15129|hemoglobin, beta adult major chain	AK027903|Hbb-b1|15129|hemoglobin, beta adult major chain	AK147001|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chrM_+_9875_9905	0.0586886	LHX3,4.p2	AK140187|ND4L|17720|NADH dehydrogenase subunit 4L	AK157367|ND4L|17720|NADH dehydrogenase subunit 4L	AK144853|ND4L|17720|NADH dehydrogenase subunit 4L	AK153747|ND4L|17720|NADH dehydrogenase subunit 4L
mm9_v1_chr9_-_57531425_57531441	0.0583349	LHX3,4.p2	X04283|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	BC018298|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr7_+_146434362_146434395	0.0582756	LHX3,4.p2	BC116669|Pwwp2b|101631|PWWP domain containing 2B	NM_001033206|Pwwp2b|101631|PWWP domain containing 2B	NM_001098636|Pwwp2b|101631|PWWP domain containing 2B	AK158245|Pwwp2b|101631|PWWP domain containing 2B	BC116720|Pwwp2b|101631|PWWP domain containing 2B	AK165809|Pwwp2b|101631|PWWP domain containing 2B
mm9_v1_chr5_+_28168688_28168939	0.057989	LHX3,4.p2	AK141636|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A	BC115911|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A	BC116654|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A
mm9_v1_chr16_-_44016471_44016548	0.0578672	LHX3,4.p2	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr5_+_28168486_28168486	0.0575998	LHX3,4.p2	NM_008314|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A
mm9_v1_chr9_-_75238110_75238135	0.0573994	LHX3,4.p2	BC024684|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr8_-_72433344_72433376	0.0572349	LHX3,4.p2	AK004386|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr6_-_72310580_72310656	0.0571717	LHX3,4.p2	AK195168|Rnf181|66510|ring finger protein 181	AK202921|Rnf181|66510|ring finger protein 181	AK209718|Rnf181|66510|ring finger protein 181	AK211264|Rnf181|66510|ring finger protein 181	AK211423|Rnf181|66510|ring finger protein 181	AK213249|Rnf181|66510|ring finger protein 181
mm9_v1_chr1_-_95342168_95342227	0.0566033	LHX3,4.p2	BC035301|Hdlbp|110611|high density lipoprotein (HDL) binding protein	BC008524|Hdlbp|110611|high density lipoprotein (HDL) binding protein	AK153965|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chrX_+_50373295_50373321	0.0565553	LHX3,4.p2	AY423851|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase
mm9_v1_chr4_-_106812064_106812078	0.0565418	LHX3,4.p2	AK186076|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene
mm9_v1_chr1_-_180260325_180260384	0.0562135	LHX3,4.p2	
mm9_v1_chr11_-_106646516_106646611	0.0561078	LHX3,4.p2	AK219348|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr1_-_69154627_69154642	0.0558218	LHX3,4.p2	AK144050|Erbb4|13869|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	NM_010154|Erbb4|13869|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
mm9_v1_chr7_-_15031917_15031936	0.0558193	LHX3,4.p2	EU486167|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK041070|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	NM_175250|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	EU486166|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr2_-_134380065_134380100	0.0555482	LHX3,4.p2	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr1_+_97230610_97230736	0.0547268	LHX3,4.p2	AK152164|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chr1_+_162917640_162917674	0.0546058	LHX3,4.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr1_+_75432535_75432608	0.0544922	LHX3,4.p2	AK144311|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK150473|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK182835|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK198797|Gmppa|69080|GDP-mannose pyrophosphorylase A	BC008116|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr8_+_35870663_35870710	0.0543893	LHX3,4.p2	AK080964|Dusp4|319520|dual specificity phosphatase 4	NM_176933|Dusp4|319520|dual specificity phosphatase 4	AK053746|Dusp4|319520|dual specificity phosphatase 4	BC118941|Dusp4|319520|dual specificity phosphatase 4	BC118942|Dusp4|319520|dual specificity phosphatase 4
mm9_v1_chr2_+_129627196_129627289	0.0543683	LHX3,4.p2	BC047277|Stk35|67333|serine/threonine kinase 35
mm9_v1_chr19_+_30307417_30307431	0.0542099	LHX3,4.p2	AK149484|Mbl2|17195|mannose-binding lectin (protein C) 2	S42294|Mbl2|17195|mannose-binding lectin (protein C) 2	BC010760|Mbl2|17195|mannose-binding lectin (protein C) 2
mm9_v1_chr18_+_38611212_38611226	0.0538836	LHX3,4.p2	
mm9_v1_chr16_+_22920486_22920556	0.053181	LHX3,4.p2	AY138460|Fetub|59083|fetuin beta	BC018341|Fetub|59083|fetuin beta
mm9_v1_chr11_+_69832336_69832365	0.0529685	LHX3,4.p2	BC014807|Dlg4|13385|discs, large homolog 4 (Drosophila)	D50621|Dlg4|13385|discs, large homolog 4 (Drosophila)
mm9_v1_chr13_+_94077988_94077988	0.0528006	LHX3,4.p2	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr18_-_12914177_12914270	0.052726	LHX3,4.p2	AK209493|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr1_-_154725297_154725297	0.0525012	LHX3,4.p2	AK129101|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160257|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr8_-_61179517_61179592	0.0518092	LHX3,4.p2	EU477373|LOC100271928|100271928|testis specific expressed protein 6	NM_001177534|LOC100271928|100271928|testis specific expressed protein 6
mm9_v1_chr13_+_59686693_59686787	0.0517625	LHX3,4.p2	NM_030153|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC027201|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	AY102701|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC043701|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC056435|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm9_v1_chr3_+_19857375_19857397	0.0516604	LHX3,4.p2	AK033842|Cp|12870|ceruloplasmin
mm9_v1_chr8_-_88077181_88077304	0.051544	LHX3,4.p2	AK212721|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr10_-_8665041_8665100	0.0514112	LHX3,4.p2	
mm9_v1_chr4_-_134409044_134409108	0.0513144	LHX3,4.p2	AY364165|Tmem57|66146|transmembrane protein 57	BC054355|Tmem57|66146|transmembrane protein 57	BC010714|Tmem57|66146|transmembrane protein 57
mm9_v1_chr18_+_60934249_60934326	0.0513116	LHX3,4.p2	NM_020600|Rps14|20044|ribosomal protein S14	AK028106|Rps14|20044|ribosomal protein S14	AK003148|Rps14|20044|ribosomal protein S14	AK011213|Rps14|20044|ribosomal protein S14	AK012425|Rps14|20044|ribosomal protein S14	AK012584|Rps14|20044|ribosomal protein S14	AK019233|Rps14|20044|ribosomal protein S14	AK146976|Rps14|20044|ribosomal protein S14	AK168237|Rps14|20044|ribosomal protein S14	AK146325|Rps14|20044|ribosomal protein S14	BC042940|Rps14|20044|ribosomal protein S14	BC062874|Rps14|20044|ribosomal protein S14
mm9_v1_chr4_+_21654837_21654873	0.0512702	LHX3,4.p2	AK037957|Ccnc|51813|cyclin C	NM_001122982|Ccnc|51813|cyclin C	NM_016746|Ccnc|51813|cyclin C	AK135472|Ccnc|51813|cyclin C	U62638|Ccnc|51813|cyclin C	BC100396|Ccnc|51813|cyclin C
mm9_v1_chr11_+_72264668_72264732	0.0511484	LHX3,4.p2	AK196252|Mybbp1a|18432|MYB binding protein (P160) 1a	AK190076|Mybbp1a|18432|MYB binding protein (P160) 1a	AK194300|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr9_+_108698323_108698461	0.051019	LHX3,4.p2	BC039922|Ip6k2|76500|inositol hexaphosphate kinase 2	NM_029634|Ip6k2|76500|inositol hexaphosphate kinase 2	BC060059|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr5_-_100845171_100845280	0.0509778	LHX3,4.p2	BC043942|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	AK134681|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	AK143455|Sec31a|69162|Sec31 homolog A (S. cerevisiae)	NM_026969|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chr3_+_66789587_66789619	0.05076	LHX3,4.p2	AK012100|Rsrc1|66880|arginine/serine-rich coiled-coil 1	NM_025822|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK005242|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK043731|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK045433|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr10_-_18506598_18506598	0.0506387	LHX3,4.p2	AK030207|Gm4922|237300|predicted gene 4922	NM_177706|Gm4922|237300|predicted gene 4922
mm9_v1_chr9_+_64129387_64129441	0.050459	LHX3,4.p2	AK038111|Tipin|66131|timeless interacting protein	AK003451|Tipin|66131|timeless interacting protein	AK003802|Tipin|66131|timeless interacting protein	AK011357|Tipin|66131|timeless interacting protein	NM_025372|Tipin|66131|timeless interacting protein	BC016211|Tipin|66131|timeless interacting protein
mm9_v1_chr10_-_126719287_126719357	0.050268	LHX3,4.p2	AK034474|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr11_-_17853850_17853896	0.0501985	LHX3,4.p2	BC028916|Etaa1|68145|Ewing's tumor-associated antigen 1	AK034138|Etaa1|68145|Ewing's tumor-associated antigen 1	AK019965|Etaa1|68145|Ewing's tumor-associated antigen 1	NM_026576|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chrX_+_20937988_20937991	0.0501157	LHX3,4.p2	AK032684|Gm5124|331392|predicted pseudogene 5124	NM_198633|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr6_+_135313056_135313087	0.0495642	LHX3,4.p2	AK168806|Emp1|13730|epithelial membrane protein 1	U25633|Emp1|13730|epithelial membrane protein 1	BC138491|Emp1|13730|epithelial membrane protein 1
mm9_v1_chr10_-_114622068_114622080	0.0492241	LHX3,4.p2	BC120514|Tph2|216343|tryptophan hydroxylase 2	BC125430|Tph2|216343|tryptophan hydroxylase 2	AY090565|Tph2|216343|tryptophan hydroxylase 2	NM_173391|Tph2|216343|tryptophan hydroxylase 2
mm9_v1_chr2_+_36085945_36085997	0.0485745	LHX3,4.p2	AK159907|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	NM_008969|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr17_-_46168654_46168719	0.048332	LHX3,4.p2	AY707864|Vegfa|22339|vascular endothelial growth factor A	AY750956|Vegfa|22339|vascular endothelial growth factor A	AY750957|Vegfa|22339|vascular endothelial growth factor A	EF028705|Vegfa|22339|vascular endothelial growth factor A	BC061468|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr4_+_6321713_6321979	0.0475957	LHX3,4.p2	AK213873|Sdcbp|53378|syndecan binding protein
mm9_v1_chr5_+_67446268_67446294	0.047352	LHX3,4.p2	AK195033|Limch1|77569|LIM and calponin homology domains 1
mm9_v1_chr12_+_111724001_111724119	0.0472797	LHX3,4.p2	AB055635|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AB055636|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	U37353|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr2_-_87814819_87814819	0.0471808	LHX3,4.p2	AB061229|Olfr74|117005|olfactory receptor 74	NM_054091|Olfr74|117005|olfactory receptor 74
mm9_v1_chr7_-_134335965_134336058	0.047103	LHX3,4.p2	AK005198|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2
mm9_v1_chr3_+_144260300_144260351	0.0470429	LHX3,4.p2	AK205282|Sep15|93684|selenoprotein	AK213933|Sep15|93684|selenoprotein	AK218207|Sep15|93684|selenoprotein
mm9_v1_chr11_+_82594636_82594745	0.0470219	LHX3,4.p2	NM_010716|Lig3|16882|ligase III, DNA, ATP-dependent	BC026143|Lig3|16882|ligase III, DNA, ATP-dependent	AK031540|Lig3|16882|ligase III, DNA, ATP-dependent	AK156018|Lig3|16882|ligase III, DNA, ATP-dependent	AK010719|Lig3|16882|ligase III, DNA, ATP-dependent	AK150644|Lig3|16882|ligase III, DNA, ATP-dependent	AK167363|Lig3|16882|ligase III, DNA, ATP-dependent	BC049240|Lig3|16882|ligase III, DNA, ATP-dependent	BC083500|Lig3|16882|ligase III, DNA, ATP-dependent	AK143531|Lig3|16882|ligase III, DNA, ATP-dependent
mm9_v1_chr3_+_79395257_79395275	0.0465893	LHX3,4.p2	AK142413|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)
mm9_v1_chr13_+_76718869_76718988	0.0464949	LHX3,4.p2	AK154322|Mctp1|78771|multiple C2 domains, transmembrane 1	AK144765|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr3_-_38349112_38349206	0.0463989	LHX3,4.p2	BC051515|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr6_-_3349470_3349570	0.04605	LHX3,4.p2	BC079894|Samd9l|209086|sterile alpha motif domain containing 9-like	AK052535|Samd9l|209086|sterile alpha motif domain containing 9-like	NM_010156|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr12_-_13227172_13227259	0.0459516	LHX3,4.p2	
mm9_v1_chr16_-_90810621_90810657	0.0459362	LHX3,4.p2	AK017495|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	AK050735|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	NM_029497|Urb1|207932|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm9_v1_chr17_-_14831058_14831092	0.0457118	LHX3,4.p2	BC053702|Thbs2|21826|thrombospondin 2
mm9_v1_chr3_-_78985249_78985262	0.0452932	LHX3,4.p2	AK037061|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr7_+_31278675_31278685	0.0451184	LHX3,4.p2	AK011039|Prodh2|56189|proline dehydrogenase (oxidase) 2	AK050141|Prodh2|56189|proline dehydrogenase (oxidase) 2	NM_019546|Prodh2|56189|proline dehydrogenase (oxidase) 2	U80019|Prodh2|56189|proline dehydrogenase (oxidase) 2	AK011020|Prodh2|56189|proline dehydrogenase (oxidase) 2
mm9_v1_chr10_-_80170037_80170073	0.0448549	LHX3,4.p2	AK208513|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr1_+_138311847_138311988	0.044604	LHX3,4.p2	AK004833|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	NM_026500|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK013179|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK133731|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK076462|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	BC023840|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
mm9_v1_chr10_-_4707228_4707322	0.0443226	LHX3,4.p2	BC089511|Vip|22353|vasoactive intestinal polypeptide	AK018599|Vip|22353|vasoactive intestinal polypeptide	NM_011702|Vip|22353|vasoactive intestinal polypeptide
mm9_v1_chr2_+_59192308_59192366	0.0443051	LHX3,4.p2	AK021168|Pkp4|227937|plakophilin 4
mm9_v1_chr4_-_147222474_147222483	0.044206	LHX3,4.p2	AK131865|Zfp933|242747|zinc finger protein 933	BC058101|Zfp933|242747|zinc finger protein 933	NM_198619|Zfp933|242747|zinc finger protein 933
mm9_v1_chr5_-_93611701_93611836	0.0441497	LHX3,4.p2	
mm9_v1_chr18_-_25637339_25637341	0.0434549	LHX3,4.p2	AK038871|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr6_-_86683191_86683319	0.0431266	LHX3,4.p2	AF186095|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK132788|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AF282322|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AF163665|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)
mm9_v1_chr5_-_121062483_121062618	0.0424603	LHX3,4.p2	BC021365|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	AK003581|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_029096|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_133908|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene
mm9_v1_chr14_-_57190668_57190714	0.0422981	LHX3,4.p2	BC092399|Cenpj|219103|centromere protein J	AK077045|Cenpj|219103|centromere protein J	NM_001014996|Cenpj|219103|centromere protein J
mm9_v1_chr17_-_24210402_24210430	0.0420875	LHX3,4.p2	BC021777|Kctd5|69259|potassium channel tetramerisation domain containing 5	AK129077|Kctd5|69259|potassium channel tetramerisation domain containing 5	AK143644|Kctd5|69259|potassium channel tetramerisation domain containing 5
mm9_v1_chr8_-_81344956_81345026	0.0413408	LHX3,4.p2	BC099484|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC098230|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC030427|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK141884|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK078392|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK161686|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK019126|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr1_+_174437040_174437140	0.0412322	LHX3,4.p2	AK019231|Tagln2|21346|transgelin 2
mm9_v1_chr2_+_109532592_109532697	0.0409525	LHX3,4.p2	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr4_-_135609279_135609318	0.0408545	LHX3,4.p2	AK011211|Rpl11|67025|ribosomal protein L11	AK011800|Rpl11|67025|ribosomal protein L11	AK169053|Rpl11|67025|ribosomal protein L11	AK002998|Rpl11|67025|ribosomal protein L11	AK008422|Rpl11|67025|ribosomal protein L11	AK013923|Rpl11|67025|ribosomal protein L11	AK014593|Rpl11|67025|ribosomal protein L11	AK153486|Rpl11|67025|ribosomal protein L11	AK164445|Rpl11|67025|ribosomal protein L11	NM_025919|Rpl11|67025|ribosomal protein L11	AK088967|Rpl11|67025|ribosomal protein L11
mm9_v1_chrX_-_132706705_132706789	0.0408367	LHX3,4.p2	AK137039|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK012030|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK027927|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK083347|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK156414|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK014459|Tceal8|66684|transcription elongation factor A (SII)-like 8	BC027269|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK076203|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_001168578|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_025703|Tceal8|66684|transcription elongation factor A (SII)-like 8
mm9_v1_chr11_+_62692956_62692968	0.0404223	LHX3,4.p2	AK050027|Fam18b|67510|family with sequence similarity 18, member B
mm9_v1_chr15_+_10106992_10106998	0.0403941	LHX3,4.p2	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr1_-_135557934_135557977	0.0397951	LHX3,4.p2	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr16_+_7069927_7069947	0.0396662	LHX3,4.p2	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr7_-_151622848_151622956	0.0396446	LHX3,4.p2	AK184845|Cttn|13043|cortactin
mm9_v1_chr5_-_92687612_92687630	0.0389476	LHX3,4.p2	AK079967|Naaa|67111|N-acylethanolamine acid amidase
mm9_v1_chr9_-_57531452_57531467	0.0389383	LHX3,4.p2	BC054827|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	K02589|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	NM_009993|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	X00479|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr15_-_79845406_79845411	0.0386786	LHX3,4.p2	AK087840|Pdgfb|18591|platelet derived growth factor, B polypeptide
mm9_v1_chr18_+_35776026_35776084	0.0385418	LHX3,4.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr10_-_33344405_33344571	0.0385213	LHX3,4.p2	AK039308|Clvs2|215890|clavesin 2	NM_175448|Clvs2|215890|clavesin 2	BC058539|Clvs2|215890|clavesin 2	AK163214|Clvs2|215890|clavesin 2	AK053797|Clvs2|215890|clavesin 2	AK139868|Clvs2|215890|clavesin 2	AK139409|Clvs2|215890|clavesin 2	AK169009|Clvs2|215890|clavesin 2
mm9_v1_chr13_+_18809154_18809187	0.0384741	LHX3,4.p2	AB028843|Vps41|218035|vacuolar protein sorting 41 (yeast)	NM_172120|Vps41|218035|vacuolar protein sorting 41 (yeast)	AK162208|Vps41|218035|vacuolar protein sorting 41 (yeast)	AK051658|Vps41|218035|vacuolar protein sorting 41 (yeast)	AK164177|Vps41|218035|vacuolar protein sorting 41 (yeast)	BC119362|Vps41|218035|vacuolar protein sorting 41 (yeast)	BC125299|Vps41|218035|vacuolar protein sorting 41 (yeast)	AF327407|Vps41|218035|vacuolar protein sorting 41 (yeast)	BC049916|Vps41|218035|vacuolar protein sorting 41 (yeast)
mm9_v1_chr2_+_118639930_118640030	0.0383039	LHX3,4.p2	AK028590|D2Ertd750e|51944|DNA segment, Chr 2, ERATO Doi 750, expressed	AK012148|D2Ertd750e|51944|DNA segment, Chr 2, ERATO Doi 750, expressed	AK036374|D2Ertd750e|51944|DNA segment, Chr 2, ERATO Doi 750, expressed	AK013184|D2Ertd750e|51944|DNA segment, Chr 2, ERATO Doi 750, expressed	BC031709|D2Ertd750e|51944|DNA segment, Chr 2, ERATO Doi 750, expressed
mm9_v1_chr18_-_34738725_34738759	0.0380039	LHX3,4.p2	AK006111|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	BC049625|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	AK131722|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	NM_080637|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr11_+_105927362_105927420	0.0380038	LHX3,4.p2	AK034014|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK140143|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK147942|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK047078|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK010072|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK167963|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	BC029182|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	NM_027346|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I
mm9_v1_chr9_+_43915327_43915386	0.037948	LHX3,4.p2	BC023068|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5	NM_001040631|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5	DQ002398|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5	NM_001040632|C1qtnf5|235312|C1q and tumor necrosis factor related protein 5
mm9_v1_chr11_+_117623703_117623821	0.0377806	LHX3,4.p2	AK137381|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr19_+_7495023_7495107	0.0377331	LHX3,4.p2	BC096549|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene	BC096638|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr1_-_82287990_82288082	0.0376223	LHX3,4.p2	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr4_-_88367207_88367304	0.0374942	LHX3,4.p2	
mm9_v1_chr6_-_97155541_97155640	0.0374015	LHX3,4.p2	BC002002|Uba3|22200|ubiquitin-like modifier activating enzyme 3	BC080776|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK048148|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK032514|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK166655|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK168859|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK043801|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK014433|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_001111106|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_011666|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK159381|Uba3|22200|ubiquitin-like modifier activating enzyme 3
mm9_v1_chr19_-_13890077_13890147	0.0373909	LHX3,4.p2	NM_146796|Olfr1499|258792|olfactory receptor 1499	BC132138|Olfr1499|258792|olfactory receptor 1499
mm9_v1_chr1_+_95395940_95395952	0.0373473	LHX3,4.p2	AK196297|Sept2|18000|septin 2	AK216929|Sept2|18000|septin 2
mm9_v1_chr15_-_103278889_103278900	0.0373009	LHX3,4.p2	BC048502|BC048502|223927|cDNA sequence BC048502	NM_177631|BC048502|223927|cDNA sequence BC048502	AK131692|BC048502|223927|cDNA sequence BC048502
mm9_v1_chr9_+_72806591_72806665	0.0372312	LHX3,4.p2	AY428507|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	AY464142|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	NM_001163725|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	NM_026314|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	AK076862|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	AK161368|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)	BC026462|Dyx1c1|67685|dyslexia susceptibility 1 candidate 1 homolog (human)
mm9_v1_chr5_-_92776160_92776261	0.0370987	LHX3,4.p2	AK152838|Cxcl10|15945|chemokine (C-X-C motif) ligand 10
mm9_v1_chr7_-_29185621_29185738	0.0367981	LHX3,4.p2	
mm9_v1_chr14_+_124059330_124059403	0.036387	LHX3,4.p2	AK051773|Itgbl1|223272|integrin, beta-like 1	NM_145467|Itgbl1|223272|integrin, beta-like 1	BC020152|Itgbl1|223272|integrin, beta-like 1	AK029068|Itgbl1|223272|integrin, beta-like 1
mm9_v1_chr6_-_38074549_38074585	0.0363773	LHX3,4.p2	AK165464|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AF435090|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK128892|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	AK143790|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4	NM_080467|Atp6v0a4|140494|ATPase, H+ transporting, lysosomal V0 subunit A4
mm9_v1_chr11_-_59220890_59220958	0.0363516	LHX3,4.p2	AK213485|Snap47|67826|synaptosomal-associated protein, 47
mm9_v1_chrX_-_96665980_96666083	0.0361901	LHX3,4.p2	AK005373|Pja1|18744|praja1, RING-H2 motif containing	BC037616|Pja1|18744|praja1, RING-H2 motif containing	AK181060|Pja1|18744|praja1, RING-H2 motif containing	AK181628|Pja1|18744|praja1, RING-H2 motif containing	AK188149|Pja1|18744|praja1, RING-H2 motif containing	BC025975|Pja1|18744|praja1, RING-H2 motif containing	AK145943|Pja1|18744|praja1, RING-H2 motif containing	AF335250|Pja1|18744|praja1, RING-H2 motif containing	AF335251|Pja1|18744|praja1, RING-H2 motif containing	AF335252|Pja1|18744|praja1, RING-H2 motif containing	AK135382|Pja1|18744|praja1, RING-H2 motif containing	NM_001083110|Pja1|18744|praja1, RING-H2 motif containing	NM_008853|Pja1|18744|praja1, RING-H2 motif containing
mm9_v1_chrX_-_161764912_161765057	0.036119	LHX3,4.p2	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr1_+_34062720_34062743	0.0352694	LHX3,4.p2	AK039885|Dst|13518|dystonin
mm9_v1_chr7_+_29225955_29226034	0.0351741	LHX3,4.p2	AK009967|Gmfg|63986|glia maturation factor, gamma	NM_001039192|Gmfg|63986|glia maturation factor, gamma	AB003588|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr3_-_116671573_116671671	0.0345914	LHX3,4.p2	AF263246|Palmd|114301|palmdelphin	AL391037|Palmd|114301|palmdelphin	AJ312215|Palmd|114301|palmdelphin	AK171869|Palmd|114301|palmdelphin	BC010193|Palmd|114301|palmdelphin	AK043695|Palmd|114301|palmdelphin	AK014531|Palmd|114301|palmdelphin
mm9_v1_chr5_+_34974750_34974884	0.0341416	LHX3,4.p2	
mm9_v1_chr8_-_47292973_47292977	0.0341082	LHX3,4.p2	AK186988|Slc25a4|11739|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
mm9_v1_chr1_+_169548381_169548439	0.0339883	LHX3,4.p2	NM_001159731|Rxrg|20183|retinoid X receptor gamma	S62952|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr17_+_13208071_13208135	0.0337033	LHX3,4.p2	AK206580|Sod2|20656|superoxide dismutase 2, mitochondrial
mm9_v1_chr15_+_99543952_99544029	0.033658	LHX3,4.p2	AK190322|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr6_+_4484651_4484672	0.033566	LHX3,4.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr12_-_74147698_74147707	0.0334426	LHX3,4.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr17_+_56752805_56752873	0.0334087	LHX3,4.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chr11_+_49058980_49059003	0.0333766	LHX3,4.p2	L07037|Mgat1|17308|mannoside acetylglucosaminyltransferase 1
mm9_v1_chrX_+_90900201_90900217	0.0333165	LHX3,4.p2	AK149304|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189950|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	NM_177546|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK053577|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr12_+_45412878_45412942	0.0330584	LHX3,4.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr11_-_77997042_77997098	0.0329192	LHX3,4.p2	BC026656|Rpl23a|268449|ribosomal protein L23A	BC096637|Rpl23a|268449|ribosomal protein L23A	AF452721|Rpl23a|268449|ribosomal protein L23A	BC029892|Rpl23a|268449|ribosomal protein L23A	AK028387|Rpl23a|268449|ribosomal protein L23A	AK152095|Rpl23a|268449|ribosomal protein L23A	BC086884|Rpl23a|268449|ribosomal protein L23A	BC086883|Rpl23a|268449|ribosomal protein L23A	BC125640|Rpl23a|268449|ribosomal protein L23A	BC125642|Rpl23a|268449|ribosomal protein L23A	NM_207523|Rpl23a|268449|ribosomal protein L23A
mm9_v1_chrX_-_133267605_133267741	0.0329022	LHX3,4.p2	
mm9_v1_chr4_+_137798218_137798221	0.0328268	LHX3,4.p2	AK218342|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr4_-_134081867_134082196	0.0324628	LHX3,4.p2	AK196748|Fam54b|76824|family with sequence similarity 54, member B	AK205711|Fam54b|76824|family with sequence similarity 54, member B	AK194688|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr16_-_56690646_56690662	0.032311	LHX3,4.p2	
mm9_v1_chr8_+_73054891_73055139	0.0321947	LHX3,4.p2	AK177460|Fkbp8|14232|FK506 binding protein 8	AK184741|Fkbp8|14232|FK506 binding protein 8	AK182349|Fkbp8|14232|FK506 binding protein 8	AK197324|Fkbp8|14232|FK506 binding protein 8	AK209719|Fkbp8|14232|FK506 binding protein 8	AK212094|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr6_+_58546610_58546665	0.0320957	LHX3,4.p2	BC053730|Abcg2|26357|ATP-binding cassette, sub-family G (WHITE), member 2	NM_011920|Abcg2|26357|ATP-binding cassette, sub-family G (WHITE), member 2
mm9_v1_chr7_-_30945790_30945794	0.0319451	LHX3,4.p2	AK033366|8430406M14Rik|399592|RIKEN cDNA 8430406M14 gene
mm9_v1_chr11_-_62190182_62190262	0.031925	LHX3,4.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr8_-_3154851_3154868	0.0319113	LHX3,4.p2	AK085344|Insr|16337|insulin receptor
mm9_v1_chr11_-_94254221_94254308	0.0318804	LHX3,4.p2	BC048825|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK155664|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY841885|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	BC150788|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534127|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534128|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AF534129|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AY795569|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK149551|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	NM_029600|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK156615|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	AK172420|Abcc3|76408|ATP-binding cassette, sub-family C (CFTR/MRP), member 3
mm9_v1_chr7_-_125263314_125263384	0.0309753	LHX3,4.p2	AK004228|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK012904|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK005514|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr13_-_25112189_25112247	0.0306158	LHX3,4.p2	NM_001013389|Mrs2|380836|MRS2 magnesium homeostasis factor homolog (S. cerevisiae)
mm9_v1_chr3_-_144372258_144372323	0.0305831	LHX3,4.p2	AK178501|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr1_+_174628164_174628196	0.0303767	LHX3,4.p2	AK050392|Crp|12944|C-reactive protein, pentraxin-related	NM_007768|Crp|12944|C-reactive protein, pentraxin-related	X17496|Crp|12944|C-reactive protein, pentraxin-related	AK088477|Crp|12944|C-reactive protein, pentraxin-related	BC011124|Crp|12944|C-reactive protein, pentraxin-related
mm9_v1_chr5_+_53981893_53981983	0.030114	LHX3,4.p2	BC051387|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK080359|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK145187|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK090006|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region
mm9_v1_chr6_-_71773747_71773805	0.0300773	LHX3,4.p2	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr8_+_28164658_28164830	0.0299781	LHX3,4.p2	AK219818|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr16_-_84955488_84955582	0.0298816	LHX3,4.p2	AK190067|App|11820|amyloid beta (A4) precursor protein	AK194558|App|11820|amyloid beta (A4) precursor protein	AK213784|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr7_-_53086135_53086313	0.0295916	LHX3,4.p2	BC008121|Grwd1|101612|glutamate-rich WD repeat containing 1	BC083143|Grwd1|101612|glutamate-rich WD repeat containing 1	BC028896|Grwd1|101612|glutamate-rich WD repeat containing 1	NM_153419|Grwd1|101612|glutamate-rich WD repeat containing 1	AK077611|Grwd1|101612|glutamate-rich WD repeat containing 1	AB001539|Grwd1|101612|glutamate-rich WD repeat containing 1
mm9_v1_chr1_-_58026858_58026927	0.0294476	LHX3,4.p2	AK032658|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK132699|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK053098|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK079700|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159864|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159865|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_030211|Kctd18|51960|potassium channel tetramerisation domain containing 18
mm9_v1_chr7_+_9080031_9080031	0.0290906	LHX3,4.p2	NM_001105070|Vmn2r38|434110|vomeronasal 2, receptor 38
mm9_v1_chrX_+_91881407_91881417	0.0290223	LHX3,4.p2	NM_008179|Gspt2|14853|G1 to S phase transition 2	AK050859|Gspt2|14853|G1 to S phase transition 2	AK019241|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr6_+_56935288_56935335	0.0287151	LHX3,4.p2	BC138068|Vmn1r5|171192|vomeronasal 1 receptor 5	BC138069|Vmn1r5|171192|vomeronasal 1 receptor 5	NM_134174|Vmn1r5|171192|vomeronasal 1 receptor 5
mm9_v1_chr2_+_22751081_22751226	0.0286169	LHX3,4.p2	AK012307|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	AB210841|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC026820|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC107274|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1	BC107273|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1
mm9_v1_chr3_+_132772586_132772695	0.0284564	LHX3,4.p2	AK015941|Ints12|71793|integrator complex subunit 12
mm9_v1_chr2_-_160773804_160773823	0.0283859	LHX3,4.p2	AK017414|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chr6_+_38542722_38542769	0.0283057	LHX3,4.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr13_+_97158248_97158334	0.0282797	LHX3,4.p2	AK150656|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	NM_026173|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK012926|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC037631|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC027118|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK089013|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK004769|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC016527|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)
mm9_v1_chr15_-_96861590_96861647	0.028222	LHX3,4.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr15_+_3230053_3230123	0.0280427	LHX3,4.p2	
mm9_v1_chrX_+_35953741_35953908	0.0279628	LHX3,4.p2	AK087975|Mcts1|68995|malignant T cell amplified sequence 1	AK005292|Mcts1|68995|malignant T cell amplified sequence 1	NM_026902|Mcts1|68995|malignant T cell amplified sequence 1	BC010486|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chr9_-_36540210_36540345	0.0276355	LHX3,4.p2	AK017358|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr17_-_37451325_37451381	0.0275761	LHX3,4.p2	BC111097|Olfr100|404307|olfactory receptor 100	BC127233|Olfr100|404307|olfactory receptor 100	BC127234|Olfr100|404307|olfactory receptor 100	NM_207673|Olfr100|404307|olfactory receptor 100	BC139114|Olfr102|258218|olfactory receptor 102	BC139115|Olfr102|258218|olfactory receptor 102	NM_001011721|Olfr102|258218|olfactory receptor 102
mm9_v1_chr19_-_34736879_34736908	0.0274581	LHX3,4.p2	AK090072|Gm14446|667373|predicted gene 14446
mm9_v1_chr7_+_107307748_107307807	0.0274369	LHX3,4.p2	AK011925|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115472|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	NM_026010|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115473|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK008917|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK013127|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)
mm9_v1_chr12_+_50484907_50484951	0.0273348	LHX3,4.p2	BC064449|Foxg1|15228|forkhead box G1
mm9_v1_chr15_-_58614642_58614788	0.0268847	LHX3,4.p2	AK011623|Tmem65|74868|transmembrane protein 65
mm9_v1_chr3_+_10012576_10012609	0.0268124	LHX3,4.p2	AK011551|Fabp5|16592|fatty acid binding protein 5, epidermal	AK166506|Fabp5|16592|fatty acid binding protein 5, epidermal	AK167389|Fabp5|16592|fatty acid binding protein 5, epidermal	AK008782|Fabp5|16592|fatty acid binding protein 5, epidermal	BC002008|Fabp5|16592|fatty acid binding protein 5, epidermal	BC053042|Fabp5|16592|fatty acid binding protein 5, epidermal	NM_010634|Fabp5|16592|fatty acid binding protein 5, epidermal	X70100|Fabp5|16592|fatty acid binding protein 5, epidermal	BC100543|Fabp5|16592|fatty acid binding protein 5, epidermal
mm9_v1_chrX_+_97710893_97711108	0.026737	LHX3,4.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr13_-_89881804_89881848	0.0266712	LHX3,4.p2	D28599|Vcan|13003|versican	D32040|Vcan|13003|versican
mm9_v1_chr4_+_106260649_106260683	0.0262788	LHX3,4.p2	AK010192|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr10_-_62784937_62784977	0.0261904	LHX3,4.p2	AK139946|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chrX_+_35954355_35954475	0.02619	LHX3,4.p2	AK138385|Mcts1|68995|malignant T cell amplified sequence 1	BC037103|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chr16_-_88290458_88290613	0.025973	LHX3,4.p2	AK044420|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK044250|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK043737|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK048634|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK043542|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK133667|Grik1|14805|glutamate receptor, ionotropic, kainate 1	X66118|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK042635|Grik1|14805|glutamate receptor, ionotropic, kainate 1	NM_010348|Grik1|14805|glutamate receptor, ionotropic, kainate 1	NM_146072|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK046122|Grik1|14805|glutamate receptor, ionotropic, kainate 1	AK148296|Grik1|14805|glutamate receptor, ionotropic, kainate 1
mm9_v1_chr15_-_72929166_72929248	0.0259087	LHX3,4.p2	AK148725|2310051F07Rik|108745|RIKEN cDNA 2310051F07 gene
mm9_v1_chr13_+_54682957_54683061	0.0255913	LHX3,4.p2	AK090305|Arl10|56795|ADP-ribosylation factor-like 10
mm9_v1_chrX_+_98835386_98835624	0.0254072	LHX3,4.p2	AK076418|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	NM_139144|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AK163296|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC025097|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC057319|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC037194|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC055851|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AF363030|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm9_v1_chr1_-_145454821_145454855	0.0251966	LHX3,4.p2	AK029710|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr10_-_116782524_116782604	0.0251385	LHX3,4.p2	AK086495|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr3_+_28596824_28596914	0.0248892	LHX3,4.p2	AK005068|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	NM_031197|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	AK165430|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	X15684|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2	BC034675|Slc2a2|20526|solute carrier family 2 (facilitated glucose transporter), member 2
mm9_v1_chr6_-_13557981_13558062	0.0247527	LHX3,4.p2	BC024911|Tmem168|101118|transmembrane protein 168	BC007160|Tmem168|101118|transmembrane protein 168	AK054353|Tmem168|101118|transmembrane protein 168	AK152957|Tmem168|101118|transmembrane protein 168	AK034589|Tmem168|101118|transmembrane protein 168	AK170302|Tmem168|101118|transmembrane protein 168	AK018471|Tmem168|101118|transmembrane protein 168	AK051532|Tmem168|101118|transmembrane protein 168	NM_028990|Tmem168|101118|transmembrane protein 168
mm9_v1_chr15_+_31154178_31154275	0.0247489	LHX3,4.p2	BC024876|Dap|223453|death-associated protein	BC010828|Dap|223453|death-associated protein	AK169162|Dap|223453|death-associated protein	BC057669|Dap|223453|death-associated protein	AK167579|Dap|223453|death-associated protein	AK014991|Dap|223453|death-associated protein	AK167688|Dap|223453|death-associated protein
mm9_v1_chr9_+_123429291_123429490	0.0247422	LHX3,4.p2	AK180316|Limd1|29806|LIM domains containing 1	AK212225|Limd1|29806|LIM domains containing 1	AK215267|Limd1|29806|LIM domains containing 1	AK215631|Limd1|29806|LIM domains containing 1	AK216846|Limd1|29806|LIM domains containing 1	AK220081|Limd1|29806|LIM domains containing 1	AK210611|Limd1|29806|LIM domains containing 1
mm9_v1_chr3_+_134970663_134970722	0.0246326	LHX3,4.p2	AK029417|Nhedc2|97086|Na+/H+ exchanger domain containing 2	NM_178877|Nhedc2|97086|Na+/H+ exchanger domain containing 2	AK076505|Nhedc2|97086|Na+/H+ exchanger domain containing 2	BC090977|Nhedc2|97086|Na+/H+ exchanger domain containing 2
mm9_v1_chr12_+_80398268_80398337	0.0246095	LHX3,4.p2	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chr1_-_136700389_136700428	0.0243743	LHX3,4.p2	AK035285|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm9_v1_chr5_+_64484146_64484264	0.0240741	LHX3,4.p2	BC052762|Pgm1|66681|phosphoglucomutase 1	NM_025700|Pgm1|66681|phosphoglucomutase 1	BC030869|Pgm1|66681|phosphoglucomutase 1	AK014332|Pgm1|66681|phosphoglucomutase 1
mm9_v1_chr18_+_70728508_70728589	0.0238751	LHX3,4.p2	AK082825|Mbd2|17191|methyl-CpG binding domain protein 2
mm9_v1_chr1_+_162917586_162917638	0.0235243	LHX3,4.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr15_+_99236350_99236367	0.0227302	LHX3,4.p2	AK206236|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chrX_+_63906333_63906333	0.0227065	LHX3,4.p2	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr3_+_63100101_63100109	0.0226634	LHX3,4.p2	AK033824|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr2_-_38080023_38080025	0.0225806	LHX3,4.p2	AK033323|8030493G06Rik|320880|RIKEN cDNA 8030493G06 gene
mm9_v1_chr7_-_149069070_149069207	0.0225761	LHX3,4.p2	AK049198|Tollip|54473|toll interacting protein
mm9_v1_chr11_-_61058671_61058791	0.0223731	LHX3,4.p2	
mm9_v1_chr2_+_14978339_14978456	0.0222557	LHX3,4.p2	
mm9_v1_chr11_-_69730589_69730837	0.0218443	LHX3,4.p2	AK207553|Eif5a|276770|eukaryotic translation initiation factor 5A	AK211666|Eif5a|276770|eukaryotic translation initiation factor 5A	AK217079|Eif5a|276770|eukaryotic translation initiation factor 5A	AK189636|Eif5a|276770|eukaryotic translation initiation factor 5A	AK201607|Eif5a|276770|eukaryotic translation initiation factor 5A	AK213375|Eif5a|276770|eukaryotic translation initiation factor 5A	AK218644|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr6_-_128384424_128384437	0.0217663	LHX3,4.p2	AK181993|Fkbp4|14228|FK506 binding protein 4	AK188096|Fkbp4|14228|FK506 binding protein 4
mm9_v1_chr2_-_17970075_17970075	0.0217277	LHX3,4.p2	BC050860|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene	NM_028317|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene
mm9_v1_chr4_+_21654878_21654941	0.0213832	LHX3,4.p2	AK035762|Ccnc|51813|cyclin C	AK009615|Ccnc|51813|cyclin C	AK035728|Ccnc|51813|cyclin C	AK013273|Ccnc|51813|cyclin C	AK014079|Ccnc|51813|cyclin C	BC003344|Ccnc|51813|cyclin C	AK153035|Ccnc|51813|cyclin C	BC029211|Ccnc|51813|cyclin C	BC087544|Ccnc|51813|cyclin C	BC120649|Ccnc|51813|cyclin C	BC120677|Ccnc|51813|cyclin C	BC062376|Ccnc|51813|cyclin C	BC037689|Ccnc|51813|cyclin C
mm9_v1_chr3_+_32607582_32607695	0.0211832	LHX3,4.p2	AF041476|Actl6a|56456|actin-like 6A	AK169278|Actl6a|56456|actin-like 6A	AK090154|Actl6a|56456|actin-like 6A	AK167905|Actl6a|56456|actin-like 6A	BC094498|Actl6a|56456|actin-like 6A	AK002724|Actl6a|56456|actin-like 6A	BC001994|Actl6a|56456|actin-like 6A
mm9_v1_chr13_-_102462584_102462601	0.021175	LHX3,4.p2	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr3_+_94247220_94247297	0.0211295	LHX3,4.p2	AK021196|Mrpl9|78523|mitochondrial ribosomal protein L9	AK161563|Mrpl9|78523|mitochondrial ribosomal protein L9	AK040055|Mrpl9|78523|mitochondrial ribosomal protein L9	AK162023|Mrpl9|78523|mitochondrial ribosomal protein L9	NM_030116|Mrpl9|78523|mitochondrial ribosomal protein L9	AK146237|Mrpl9|78523|mitochondrial ribosomal protein L9	AK046099|Mrpl9|78523|mitochondrial ribosomal protein L9	BC116385|Mrpl9|78523|mitochondrial ribosomal protein L9	BC116386|Mrpl9|78523|mitochondrial ribosomal protein L9	AB049637|Mrpl9|78523|mitochondrial ribosomal protein L9
mm9_v1_chr16_-_13668230_13668281	0.0210601	LHX3,4.p2	AK041044|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK160611|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	BC021899|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK049829|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK045181|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK004572|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	NM_028761|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)
mm9_v1_chr5_+_33760994_33761117	0.0209467	LHX3,4.p2	AK084585|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK163728|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr10_+_89207730_89207982	0.0208397	LHX3,4.p2	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr13_-_55201578_55201611	0.0207821	LHX3,4.p2	BC051659|Uimc1|20184|ubiquitin interaction motif containing 1	BC066220|Uimc1|20184|ubiquitin interaction motif containing 1	AK083342|Uimc1|20184|ubiquitin interaction motif containing 1	BC037092|Uimc1|20184|ubiquitin interaction motif containing 1	BC040808|Uimc1|20184|ubiquitin interaction motif containing 1
mm9_v1_chrX_-_91077426_91077556	0.0203897	LHX3,4.p2	AK075879|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3	BC008126|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3	NM_145630|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3	AK132024|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3	AK075985|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3	AK088478|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3	AK169874|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3
mm9_v1_chr6_-_148937854_148937926	0.0203326	LHX3,4.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr1_-_187153212_187153265	0.0200098	LHX3,4.p2	AK164435|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK051778|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK088965|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK036182|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK008042|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK043729|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	BC052403|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK050358|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK166832|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial
mm9_v1_chr10_-_126626878_126627109	0.019887	LHX3,4.p2	AK158684|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_001166413|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AF487515|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AK010452|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	BC041113|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_028027|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25
mm9_v1_chrX_-_45944937_45944938	0.0197524	LHX3,4.p2	BC051397|Zfp280c|208968|zinc finger protein 280C	NM_001166650|Zfp280c|208968|zinc finger protein 280C	BC028839|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr2_-_94253040_94253188	0.0194977	LHX3,4.p2	AK208753|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr11_-_51414445_51414449	0.0189162	LHX3,4.p2	
mm9_v1_chr2_-_87552060_87552060	0.018913	LHX3,4.p2	NM_001011833|Olfr1137|258101|olfactory receptor 1137
mm9_v1_chr2_+_162762650_162762674	0.0188194	LHX3,4.p2	
mm9_v1_chr11_+_82988687_82988701	0.0187087	LHX3,4.p2	BC044865|Slfn4|20558|schlafen 4	NM_011410|Slfn4|20558|schlafen 4	AK137559|Slfn4|20558|schlafen 4	AK137689|Slfn4|20558|schlafen 4
mm9_v1_chr2_-_44972914_44972969	0.0186016	LHX3,4.p2	AJ535778|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr3_+_89234339_89234606	0.0182228	LHX3,4.p2	BC025640|Pygo2|68911|pygopus 2	AK209495|Pygo2|68911|pygopus 2
mm9_v1_chr7_+_146434402_146434460	0.0181252	LHX3,4.p2	AK160932|Pwwp2b|101631|PWWP domain containing 2B
mm9_v1_chrX_+_103778524_103778524	0.0178695	LHX3,4.p2	AK044840|Gm5127|331493|predicted gene 5127	AK142438|Gm5127|331493|predicted gene 5127	NM_001033541|Gm5127|331493|predicted gene 5127
mm9_v1_chr9_+_85739048_85739158	0.0178465	LHX3,4.p2	AK050794|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr17_+_30272123_30272409	0.0177895	LHX3,4.p2	BC027161|Zfand3|21769|zinc finger, AN1-type domain 3	EF437371|Zfand3|21769|zinc finger, AN1-type domain 3	BC024483|Zfand3|21769|zinc finger, AN1-type domain 3
mm9_v1_chr5_-_123438493_123438509	0.0176928	LHX3,4.p2	AK087953|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chrX_-_71491736_71491773	0.017692	LHX3,4.p2	BC038478|Flna|192176|filamin, alpha	AK089311|Flna|192176|filamin, alpha
mm9_v1_chr8_+_125748717_125748786	0.0175554	LHX3,4.p2	NM_194444|Cdk10|234854|cyclin-dependent kinase 10	NM_194446|Cdk10|234854|cyclin-dependent kinase 10	DQ288857|Cdk10|234854|cyclin-dependent kinase 10	BC017131|Cdk10|234854|cyclin-dependent kinase 10	AK144801|Cdk10|234854|cyclin-dependent kinase 10	AK170594|Cdk10|234854|cyclin-dependent kinase 10	BC052096|Cdk10|234854|cyclin-dependent kinase 10	BC023736|Cdk10|234854|cyclin-dependent kinase 10	AK133918|Cdk10|234854|cyclin-dependent kinase 10
mm9_v1_chr1_-_163748523_163748605	0.0175093	LHX3,4.p2	AK033720|AI848100|226551|expressed sequence AI848100
mm9_v1_chr15_+_25682945_25682960	0.0174715	LHX3,4.p2	AK161653|Myo10|17909|myosin X
mm9_v1_chr16_-_38445988_38446143	0.0173206	LHX3,4.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr11_-_65083442_65083498	0.0171257	LHX3,4.p2	AF384055|Myocd|214384|myocardin	AY303755|Myocd|214384|myocardin	NM_145136|Myocd|214384|myocardin	NM_146386|Myocd|214384|myocardin	AK142216|Myocd|214384|myocardin
mm9_v1_chr1_+_174249713_174249834	0.0171159	LHX3,4.p2	
mm9_v1_chr5_+_96639133_96639181	0.0167654	LHX3,4.p2	NM_001039084|Mrpl1|94061|mitochondrial ribosomal protein L1	NM_053158|Mrpl1|94061|mitochondrial ribosomal protein L1	AK083978|Mrpl1|94061|mitochondrial ribosomal protein L1	AK142249|Mrpl1|94061|mitochondrial ribosomal protein L1	AK010343|Mrpl1|94061|mitochondrial ribosomal protein L1	AK017938|Mrpl1|94061|mitochondrial ribosomal protein L1	AK172544|Mrpl1|94061|mitochondrial ribosomal protein L1	BC061042|Mrpl1|94061|mitochondrial ribosomal protein L1	AK015476|Mrpl1|94061|mitochondrial ribosomal protein L1	AB049632|Mrpl1|94061|mitochondrial ribosomal protein L1
mm9_v1_chr12_-_32017267_32017279	0.0165814	LHX3,4.p2	AK209175|Dld|13382|dihydrolipoamide dehydrogenase
mm9_v1_chr9_+_109905895_109906037	0.0165802	LHX3,4.p2	
mm9_v1_chr5_-_89886732_89886828	0.0164627	LHX3,4.p2	M55413|Gc|14473|group specific component	AK010965|Gc|14473|group specific component	BC010762|Gc|14473|group specific component	BC051395|Gc|14473|group specific component	NM_008096|Gc|14473|group specific component
mm9_v1_chrX_+_132781054_132781063	0.0163637	LHX3,4.p2	AK213578|Wbp5|22381|WW domain binding protein 5
mm9_v1_chr11_-_74491006_74491182	0.0161908	LHX3,4.p2	AK152284|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	AK164276|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr7_-_20188580_20188591	0.016085	LHX3,4.p2	AB080582|Clasrp|53609|CLK4-associating serine/arginine rich protein	AB080583|Clasrp|53609|CLK4-associating serine/arginine rich protein
mm9_v1_chr15_+_101914622_101914760	0.0160362	LHX3,4.p2	AK207103|Eif4b|75705|eukaryotic translation initiation factor 4B	AK180065|Eif4b|75705|eukaryotic translation initiation factor 4B	AK186733|Eif4b|75705|eukaryotic translation initiation factor 4B	AK192567|Eif4b|75705|eukaryotic translation initiation factor 4B	AK210570|Eif4b|75705|eukaryotic translation initiation factor 4B	AK212755|Eif4b|75705|eukaryotic translation initiation factor 4B	AK212975|Eif4b|75705|eukaryotic translation initiation factor 4B	AK213592|Eif4b|75705|eukaryotic translation initiation factor 4B	AK218019|Eif4b|75705|eukaryotic translation initiation factor 4B	AK214822|Eif4b|75705|eukaryotic translation initiation factor 4B	AK203780|Eif4b|75705|eukaryotic translation initiation factor 4B	AK195122|Eif4b|75705|eukaryotic translation initiation factor 4B	AK205492|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr2_-_9981155_9981246	0.0159241	LHX3,4.p2	AK187037|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
mm9_v1_chr6_-_29457924_29457972	0.0158035	LHX3,4.p2	BC119794|Kcp|333088|kielin/chordin-like protein	NM_001029985|Kcp|333088|kielin/chordin-like protein	AY884211|Kcp|333088|kielin/chordin-like protein	AK154369|Kcp|333088|kielin/chordin-like protein
mm9_v1_chr4_-_136891931_136891995	0.0155791	LHX3,4.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr2_+_22924846_22924986	0.0154316	LHX3,4.p2	AK005001|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC061484|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr5_+_104868321_104868417	0.0152757	LHX3,4.p2	BC014284|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr8_+_119983664_119983684	0.0152453	LHX3,4.p2	
mm9_v1_chr3_-_66785692_66785692	0.0152111	LHX3,4.p2	NM_013665|Shox2|20429|short stature homeobox 2	U66918|Shox2|20429|short stature homeobox 2
mm9_v1_chrX_+_154137049_154137065	0.0150792	LHX3,4.p2	AJ245772|Smpx|66106|small muscle protein, X-linked	NM_025357|Smpx|66106|small muscle protein, X-linked	AK009857|Smpx|66106|small muscle protein, X-linked	AK010172|Smpx|66106|small muscle protein, X-linked	AY026524|Smpx|66106|small muscle protein, X-linked	AK003105|Smpx|66106|small muscle protein, X-linked	AF364070|Smpx|66106|small muscle protein, X-linked
mm9_v1_chr10_-_90579986_90580013	0.0148191	LHX3,4.p2	AK198800|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK190863|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK184040|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191542|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191799|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194450|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194768|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200191|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200546|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200877|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK202780|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203930|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK213202|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK215444|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK193469|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK196032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr1_+_92509306_92509321	0.0147691	LHX3,4.p2	AK185916|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK207412|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK215258|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK212344|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK218596|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK214410|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm9_v1_chr6_-_118361541_118361556	0.0146399	LHX3,4.p2	BC030906|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)
mm9_v1_chr11_-_48927255_48927258	0.0146379	LHX3,4.p2	BC110470|Olfr1396|258334|olfactory receptor 1396	BC110471|Olfr1396|258334|olfactory receptor 1396	NM_146337|Olfr1396|258334|olfactory receptor 1396
mm9_v1_chr6_+_134590957_134591017	0.0145595	LHX3,4.p2	NM_026371|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	BC023059|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr3_+_89518943_89518994	0.0144824	LHX3,4.p2	NM_001038587|Adar|56417|adenosine deaminase, RNA-specific	AK147614|Adar|56417|adenosine deaminase, RNA-specific	AK076413|Adar|56417|adenosine deaminase, RNA-specific
mm9_v1_chr1_-_95342228_95342278	0.0143653	LHX3,4.p2	AK048780|Hdlbp|110611|high density lipoprotein (HDL) binding protein	AK161663|Hdlbp|110611|high density lipoprotein (HDL) binding protein	AK132355|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr3_+_63100128_63100144	0.0143343	LHX3,4.p2	AK040730|Mme|17380|membrane metallo endopeptidase	AK080202|Mme|17380|membrane metallo endopeptidase	BC034092|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr16_+_20097626_20097705	0.0142908	LHX3,4.p2	NM_029436|Klhl24|75785|kelch-like 24 (Drosophila)	AK015239|Klhl24|75785|kelch-like 24 (Drosophila)	AK044892|Klhl24|75785|kelch-like 24 (Drosophila)
mm9_v1_chr13_-_93258004_93258035	0.0141803	LHX3,4.p2	AK134948|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr1_+_174051888_174051985	0.0141645	LHX3,4.p2	
mm9_v1_chr15_-_79359998_79360114	0.0139674	LHX3,4.p2	AK079294|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK011338|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK079442|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK164451|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr6_+_141578016_141578059	0.0137678	LHX3,4.p2	AB031959|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2	NM_020495|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2
mm9_v1_chrX_-_72823345_72823551	0.0137177	LHX3,4.p2	AB232636|Rab39b|67790|RAB39B, member RAS oncogene family	BC052472|Rab39b|67790|RAB39B, member RAS oncogene family	AK039013|Rab39b|67790|RAB39B, member RAS oncogene family	AK048981|Rab39b|67790|RAB39B, member RAS oncogene family	AK160737|Rab39b|67790|RAB39B, member RAS oncogene family	NM_175122|Rab39b|67790|RAB39B, member RAS oncogene family	AK018257|Rab39b|67790|RAB39B, member RAS oncogene family	AK020665|Rab39b|67790|RAB39B, member RAS oncogene family
mm9_v1_chr10_-_88875526_88875657	0.0136705	LHX3,4.p2	AK171905|Gas2l3|237436|growth arrest-specific 2 like 3	AK136819|Gas2l3|237436|growth arrest-specific 2 like 3
mm9_v1_chr9_+_39421128_39421153	0.0134528	LHX3,4.p2	BC125353|Olfr148|258498|olfactory receptor 148	BC132239|Olfr148|258498|olfactory receptor 148	NM_146505|Olfr148|258498|olfactory receptor 148
mm9_v1_chr8_-_95861063_95861110	0.0129996	LHX3,4.p2	AK162328|Ces1g|12623|carboxylesterase 1G	BC026897|Ces1g|12623|carboxylesterase 1G	Y12887|Ces1g|12623|carboxylesterase 1G	AK136446|Ces1g|12623|carboxylesterase 1G	AK136588|Ces1g|12623|carboxylesterase 1G	AK149446|Ces1g|12623|carboxylesterase 1G	NM_021456|Ces1g|12623|carboxylesterase 1G
mm9_v1_chr19_-_34952377_34952406	0.0129819	LHX3,4.p2	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr18_+_4375583_4375596	0.0127181	LHX3,4.p2	AK011546|Mtpap|67440|mitochondrial poly(A) polymerase	AK036760|Mtpap|67440|mitochondrial poly(A) polymerase	NM_026157|Mtpap|67440|mitochondrial poly(A) polymerase	AK154747|Mtpap|67440|mitochondrial poly(A) polymerase	AK166038|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr8_+_86090622_86090714	0.0125248	LHX3,4.p2	AK003300|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	NM_025843|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	AK002678|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC034787|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC056984|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7
mm9_v1_chr11_-_74148730_74148730	0.0124789	LHX3,4.p2	NM_146707|Olfr410|258702|olfactory receptor 410
mm9_v1_chr15_-_38770160_38770167	0.0124159	LHX3,4.p2	
mm9_v1_chr7_+_62090614_62090614	0.0123994	LHX3,4.p2	AY164459|Luzp2|233271|leucine zipper protein 2	NM_178705|Luzp2|233271|leucine zipper protein 2
mm9_v1_chr16_+_20674298_20674336	0.0122833	LHX3,4.p2	BC021441|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr5_-_123438517_123438541	0.0121836	LHX3,4.p2	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr16_-_92400226_92400324	0.0120693	LHX3,4.p2	AF237790|Rcan1|54720|regulator of calcineurin 1	AF263239|Rcan1|54720|regulator of calcineurin 1	BC013551|Rcan1|54720|regulator of calcineurin 1	AK077283|Rcan1|54720|regulator of calcineurin 1	NM_019466|Rcan1|54720|regulator of calcineurin 1
mm9_v1_chr18_-_25637786_25637794	0.0120445	LHX3,4.p2	AK078071|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr18_+_35750406_35750586	0.0117447	LHX3,4.p2	AK139050|Matr3|17184|matrin 3	AK084822|Matr3|17184|matrin 3	AK148059|Matr3|17184|matrin 3
mm9_v1_chr15_-_79359492_79359560	0.0114628	LHX3,4.p2	AK205483|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	AK212707|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr11_-_87172419_87172533	0.0114101	LHX3,4.p2	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr14_-_37938397_37938468	0.0113395	LHX3,4.p2	AK210138|Ghitm|66092|growth hormone inducible transmembrane protein
mm9_v1_chr1_-_159342068_159342217	0.0113245	LHX3,4.p2	BC120902|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr11_-_50108981_50109027	0.0113087	LHX3,4.p2	AK004422|Canx|12330|calnexin
mm9_v1_chr11_+_52202137_52202376	0.0112807	LHX3,4.p2	AK217498|Vdac1|22333|voltage-dependent anion channel 1	AK210208|Vdac1|22333|voltage-dependent anion channel 1	AK215454|Vdac1|22333|voltage-dependent anion channel 1	AK207573|Vdac1|22333|voltage-dependent anion channel 1
mm9_v1_chr4_-_132383213_132383408	0.0112245	LHX3,4.p2	AK198369|Ppp1r8|100336|protein phosphatase 1, regulatory (inhibitor) subunit 8
mm9_v1_chr13_+_49704471_49704523	0.0111778	LHX3,4.p2	AK075638|Ogn|18295|osteoglycin	AK163772|Ogn|18295|osteoglycin	D31951|Ogn|18295|osteoglycin	BC021939|Ogn|18295|osteoglycin
mm9_v1_chr1_+_155599081_155599148	0.0108747	LHX3,4.p2	AK053125|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	AK054205|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm9_v1_chr18_+_37906739_37906841	0.0108723	LHX3,4.p2	AY013793|Pcdhga10|93722|protocadherin gamma subfamily A, 10	NM_033593|Pcdhga10|93722|protocadherin gamma subfamily A, 10
mm9_v1_chr7_-_38804503_38804582	0.0108362	LHX3,4.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr15_-_82624638_82624663	0.0108143	LHX3,4.p2	BC023241|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr1_-_39608846_39608882	0.0107536	LHX3,4.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr2_-_32942666_32942723	0.0106055	LHX3,4.p2	BC132143|Garnl3|99326|GTPase activating RANGAP domain-like 3	AK034068|Garnl3|99326|GTPase activating RANGAP domain-like 3	NM_178888|Garnl3|99326|GTPase activating RANGAP domain-like 3
mm9_v1_chr14_+_120830603_120830641	0.0105248	LHX3,4.p2	AK003316|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr16_-_35363927_35364003	0.0104637	LHX3,4.p2	AK037540|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK044615|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK007341|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	AK082516|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)	NM_133704|Sec22a|317717|SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
mm9_v1_chr11_-_106642684_106642809	0.0104103	LHX3,4.p2	AK149022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr2_+_136357921_136358056	0.0103008	LHX3,4.p2	AK029804|Ankrd5|319196|ankyrin repeat domain 5	BC089504|Ankrd5|319196|ankyrin repeat domain 5	BC120825|Ankrd5|319196|ankyrin repeat domain 5	BC144833|Ankrd5|319196|ankyrin repeat domain 5	NM_175667|Ankrd5|319196|ankyrin repeat domain 5
mm9_v1_chr11_+_93905501_93905545	0.0100527	LHX3,4.p2	AK014060|Spag9|70834|sperm associated antigen 9	AK079365|Spag9|70834|sperm associated antigen 9	NM_001025428|Spag9|70834|sperm associated antigen 9	NM_001025429|Spag9|70834|sperm associated antigen 9	NM_001025430|Spag9|70834|sperm associated antigen 9	AK172961|Spag9|70834|sperm associated antigen 9
mm9_v1_chr18_-_3281709_3281744	0.00998486	LHX3,4.p2	AJ292222|Crem|12916|cAMP responsive element modulator	AJ311667|Crem|12916|cAMP responsive element modulator	S67786|Crem|12916|cAMP responsive element modulator	NM_001110854|Crem|12916|cAMP responsive element modulator	NM_001110855|Crem|12916|cAMP responsive element modulator
mm9_v1_chr3_-_95161071_95161127	0.00985866	LHX3,4.p2	AK135833|Setdb1|84505|SET domain, bifurcated 1	BC079537|Setdb1|84505|SET domain, bifurcated 1	AF091628|Setdb1|84505|SET domain, bifurcated 1	AF546078|Setdb1|84505|SET domain, bifurcated 1	AY091600|Setdb1|84505|SET domain, bifurcated 1	BC060173|Setdb1|84505|SET domain, bifurcated 1	AK132202|Setdb1|84505|SET domain, bifurcated 1	NM_001163641|Setdb1|84505|SET domain, bifurcated 1	NM_001163642|Setdb1|84505|SET domain, bifurcated 1	NM_018877|Setdb1|84505|SET domain, bifurcated 1
mm9_v1_chr8_-_96496001_96496082	0.00985014	LHX3,4.p2	AK197102|Amfr|23802|autocrine motility factor receptor
mm9_v1_chr19_+_23241546_23241602	0.00979468	LHX3,4.p2	AK009928|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr7_+_110048855_110048882	0.00968187	LHX3,4.p2	BC116966|Olfr570|259114|olfactory receptor 570	NM_147110|Olfr570|259114|olfactory receptor 570
mm9_v1_chr13_-_89881946_89882116	0.00955042	LHX3,4.p2	BC021652|Vcan|13003|versican	AK163927|Vcan|13003|versican	AK135324|Vcan|13003|versican	AK032794|Vcan|13003|versican	NM_001081249|Vcan|13003|versican	NM_001134474|Vcan|13003|versican	NM_001134475|Vcan|13003|versican	NM_019389|Vcan|13003|versican	NM_172955|Vcan|13003|versican
mm9_v1_chr14_+_31699648_31699721	0.00951755	LHX3,4.p2	NM_001159299|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	NM_018746|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK004862|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK004893|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK050016|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AK050270|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	AF023919|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC016500|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC021459|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC092258|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4	BC094457|Itih4|16427|inter alpha-trypsin inhibitor, heavy chain 4
mm9_v1_chr7_-_117509277_117509385	0.00948455	LHX3,4.p2	BC015069|Sbf2|319934|SET binding factor 2
mm9_v1_chrX_+_97170927_97171053	0.009415	LHX3,4.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr7_+_130114059_130114440	0.00938398	LHX3,4.p2	NM_011247|Rbbp6|19647|retinoblastoma binding protein 6	NM_175023|Rbbp6|19647|retinoblastoma binding protein 6	AK081261|Rbbp6|19647|retinoblastoma binding protein 6	AK045635|Rbbp6|19647|retinoblastoma binding protein 6	BC025874|Rbbp6|19647|retinoblastoma binding protein 6
mm9_v1_chr10_-_121063210_121063281	0.00936812	LHX3,4.p2	
mm9_v1_chr10_+_127759640_127759648	0.00918268	LHX3,4.p2	AK013014|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK019927|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr3_-_95675399_95675461	0.00918251	LHX3,4.p2	AK008293|Mrps21|66292|mitochondrial ribosomal protein S21	AB049956|Mrps21|66292|mitochondrial ribosomal protein S21	AK002588|Mrps21|66292|mitochondrial ribosomal protein S21	AK007662|Mrps21|66292|mitochondrial ribosomal protein S21	AK009703|Mrps21|66292|mitochondrial ribosomal protein S21	AK008265|Mrps21|66292|mitochondrial ribosomal protein S21
mm9_v1_chr3_+_89586320_89586446	0.00910315	LHX3,4.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chrX_-_133277456_133277461	0.00880119	LHX3,4.p2	NM_001168227|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr14_+_34767188_34767245	0.00878716	LHX3,4.p2	BC083133|Rbp3|19661|retinol binding protein 3, interstitial	BC017610|Rbp3|19661|retinol binding protein 3, interstitial	NM_015745|Rbp3|19661|retinol binding protein 3, interstitial	BC040282|Rbp3|19661|retinol binding protein 3, interstitial	BC042480|Rbp3|19661|retinol binding protein 3, interstitial
mm9_v1_chr10_+_127759512_127759609	0.00870959	LHX3,4.p2	AF186115|Cnpy2|56530|canopy 2 homolog (zebrafish)	NM_019953|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK150953|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chrM_+_9458_9465	0.00861424	LHX3,4.p2	AK139029|ND3|17718|NADH dehydrogenase subunit 3
mm9_v1_chr14_-_100548982_100549014	0.00860761	LHX3,4.p2	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chrX_-_75336699_75336712	0.00794211	LHX3,4.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr2_-_85745208_85745208	0.00766474	LHX3,4.p2	BC119447|Olfr1024|257900|olfactory receptor 1024	NM_001005230|Olfr1024|257900|olfactory receptor 1024
mm9_v1_chr14_-_21553783_21553783	0.00751625	LHX3,4.p2	AF520868|Ndst2|17423|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	NM_010811|Ndst2|17423|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
mm9_v1_chr18_-_75857207_75857349	0.00746372	LHX3,4.p2	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr5_-_115086269_115086364	0.00705011	LHX3,4.p2	AK158652|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4
mm9_v1_chr15_-_3253525_3253525	0.00679889	LHX3,4.p2	NM_001166063|Ccdc152|100039139|coiled-coil domain containing 152
mm9_v1_chr14_+_58143613_58143864	0.00643197	LHX3,4.p2	AK131917|Il17d|239114|interleukin 17D	NM_145837|Il17d|239114|interleukin 17D	AF458063|Il17d|239114|interleukin 17D
mm9_v1_chr5_-_37087261_37087293	0.00595823	LHX3,4.p2	AK037038|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr6_-_54767627_54767644	0.00581414	LHX3,4.p2	AK011926|2610209C05Rik|70449|RIKEN cDNA 2610209C05 gene
mm9_v1_chrX_-_7829333_7829537	0.0058091	LHX3,4.p2	AK150251|Ftsj1|54632|FtsJ homolog 1 (E. coli)	BC034880|Ftsj1|54632|FtsJ homolog 1 (E. coli)	BC011144|Ftsj1|54632|FtsJ homolog 1 (E. coli)	AK004357|Ftsj1|54632|FtsJ homolog 1 (E. coli)	AK036313|Ftsj1|54632|FtsJ homolog 1 (E. coli)	NM_133991|Ftsj1|54632|FtsJ homolog 1 (E. coli)
mm9_v1_chr9_+_92170439_92170579	0.00580575	LHX3,4.p2	NM_001195084|Plscr2|18828|phospholipid scramblase 2	NM_008880|Plscr2|18828|phospholipid scramblase 2	AK002410|Plscr2|18828|phospholipid scramblase 2	BC011299|Plscr2|18828|phospholipid scramblase 2	BC002012|Plscr2|18828|phospholipid scramblase 2
mm9_v1_chr17_+_12571455_12571482	0.00566943	LHX3,4.p2	BC014773|Plg|18815|plasminogen	NM_008877|Plg|18815|plasminogen
mm9_v1_chr7_-_134519509_134519563	0.00542687	LHX3,4.p2	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chr12_-_80007923_80007953	0.00533289	LHX3,4.p2	BC028902|Plek2|27260|pleckstrin 2	NM_013738|Plek2|27260|pleckstrin 2	AF170564|Plek2|27260|pleckstrin 2
mm9_v1_chr15_-_82624668_82624681	0.00449635	LHX3,4.p2	AK004915|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26	NM_029562|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr11_+_17157549_17157664	0.00425231	LHX3,4.p2	X95591|C1d|57316|C1D nuclear receptor co-repressor	AK028702|C1d|57316|C1D nuclear receptor co-repressor	AK035169|C1d|57316|C1D nuclear receptor co-repressor	NM_020558|C1d|57316|C1D nuclear receptor co-repressor	BC005436|C1d|57316|C1D nuclear receptor co-repressor
mm9_v1_chr10_+_128787620_128787620	0.00393834	LHX3,4.p2	NM_001011797|Olfr782|257985|olfactory receptor 782
mm9_v1_chr1_-_170362388_170362504	0.00386088	LHX3,4.p2	NM_008783|Pbx1|18514|pre B-cell leukemia transcription factor 1	NM_183355|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr18_+_38456364_38456458	0.00338646	LHX3,4.p2	AK011316|Rnf14|56736|ring finger protein 14	BC049079|Rnf14|56736|ring finger protein 14	NM_001164621|Rnf14|56736|ring finger protein 14
mm9_v1_chr8_+_34807688_34807718	0.00334388	LHX3,4.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr2_-_104857155_104857253	0.00317278	LHX3,4.p2	BC116787|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	BC116789|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK077480|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	BC005598|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	BC103795|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	NM_145380|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK168066|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK084738|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M	AK146222|Eif3m|98221|eukaryotic translation initiation factor 3, subunit M
mm9_v1_chr4_+_137797490_137797591	0.00308447	LHX3,4.p2	
mm9_v1_chrX_-_165015162_165015164	0.00293147	LHX3,4.p2	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr1_+_40082201_40082235	0.00293078	LHX3,4.p2	AK020498|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK167747|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK004047|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr9_-_39758351_39758353	0.00281332	LHX3,4.p2	BC141889|Olfr975|258825|olfactory receptor 975	BC100677|Olfr975|258825|olfactory receptor 975	BC101947|Olfr975|258825|olfactory receptor 975	NM_146828|Olfr975|258825|olfactory receptor 975
mm9_v1_chr17_-_36169573_36169660	0.00263537	LHX3,4.p2	AF100699|H2-T23|15040|histocompatibility 2, T region locus 23	AF100700|H2-T23|15040|histocompatibility 2, T region locus 23	AF100702|H2-T23|15040|histocompatibility 2, T region locus 23	AF057279|H2-T23|15040|histocompatibility 2, T region locus 23	AF082510|H2-T23|15040|histocompatibility 2, T region locus 23	BC099472|H2-T23|15040|histocompatibility 2, T region locus 23	AB359230|H2-T23|15040|histocompatibility 2, T region locus 23	AK133502|H2-T23|15040|histocompatibility 2, T region locus 23	M11284|H2-T23|15040|histocompatibility 2, T region locus 23	NM_010398|H2-T23|15040|histocompatibility 2, T region locus 23
mm9_v1_chr15_+_3230406_3230616	0.00260857	LHX3,4.p2	
mm9_v1_chr6_+_39523866_39523933	0.00233319	LHX3,4.p2	AK028557|Adck2|57869|aarF domain containing kinase 2	AK161225|Adck2|57869|aarF domain containing kinase 2	AK028568|Adck2|57869|aarF domain containing kinase 2	NM_178873|Adck2|57869|aarF domain containing kinase 2
mm9_v1_chr2_-_94252368_94252477	0.00220108	LHX3,4.p2	AK212083|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr14_+_67487686_67487690	0.00199596	LHX3,4.p2	AK135012|Gm5464|432870|predicted gene 5464	NM_001034881|Gm5464|432870|predicted gene 5464	BC147346|Gm5464|432870|predicted gene 5464	BC147347|Gm5464|432870|predicted gene 5464
mm9_v1_chr13_+_24895094_24895151	0.00191782	LHX3,4.p2	BC002217|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr5_-_144655875_144655935	0.00136816	LHX3,4.p2	AK017053|Ankrd61|66729|ankyrin repeat domain 61	BC052346|Ankrd61|66729|ankyrin repeat domain 61	AK014929|Ankrd61|66729|ankyrin repeat domain 61	NM_025732|Ankrd61|66729|ankyrin repeat domain 61
mm9_v1_chr13_-_104623606_104623708	0.00135991	LHX3,4.p2	BC005691|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr7_-_27951724_27951820	0.00112695	LHX3,4.p2	AF453879|Egln2|112406|EGL nine homolog 2 (C. elegans)	BC023299|Egln2|112406|EGL nine homolog 2 (C. elegans)	BC086764|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK075582|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK159206|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK167477|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK152223|Egln2|112406|EGL nine homolog 2 (C. elegans)	AK152056|Egln2|112406|EGL nine homolog 2 (C. elegans)	AJ310547|Egln2|112406|EGL nine homolog 2 (C. elegans)	NM_053208|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr15_+_84022647_84022764	0.000913724	LHX3,4.p2	AK159740|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK039949|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	NM_178614|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK144975|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK041783|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK084395|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119178|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119180|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK086633|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK167806|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK161378|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169066|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169351|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK003990|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK168510|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)
mm9_v1_chr1_-_72905107_72905143	0.000795186	LHX3,4.p2	AK011683|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr1_+_45390415_45390462	0.000430472	LHX3,4.p2	BC039923|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr13_-_101556356_101556493	4.65e-05	LHX3,4.p2	FJ931532|Ccnb1|268697|cyclin B1	AK143597|Ccnb1|268697|cyclin B1	BC080202|Ccnb1|268697|cyclin B1	X64713|Ccnb1|268697|cyclin B1	BC085238|Ccnb1|268697|cyclin B1	BC011478|Ccnb1|268697|cyclin B1	NM_172301|Ccnb1|268697|cyclin B1	X58708|Ccnb1|268697|cyclin B1	AK163259|Ccnb1|268697|cyclin B1	AK168993|Ccnb1|268697|cyclin B1	AK136259|Ccnb1|268697|cyclin B1	AK166686|Ccnb1|268697|cyclin B1	AK167950|Ccnb1|268697|cyclin B1	AK168441|Ccnb1|268697|cyclin B1	AK168502|Ccnb1|268697|cyclin B1	S43105|Ccnb1|268697|cyclin B1
