mm9_v1_chr13_-_14615371_14615494	2.40947	UUUUUGC	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr19_-_19185685_19185685	2.34662	UUUUUGC	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr8_+_119780918_119781056	1.97384	UUUUUGC	NM_001163262|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	AK085367|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	BC158118|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr7_-_81158546_81158567	1.9064	UUUUUGC	X83562|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	BC096546|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	NM_009181|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm9_v1_chr1_+_189821727_189821874	1.83084	UUUUUGC	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr5_-_9725274_9725369	1.787	UUUUUGC	NM_181850|Grm3|108069|glutamate receptor, metabotropic 3
mm9_v1_chr5_-_145522423_145522496	1.57209	UUUUUGC	BC127616|Tmem130|243339|transmembrane protein 130	BC127617|Tmem130|243339|transmembrane protein 130	BC067004|Tmem130|243339|transmembrane protein 130	NM_177735|Tmem130|243339|transmembrane protein 130
mm9_v1_chr6_+_7505070_7505199	1.49142	UUUUUGC	D17584|Tac1|21333|tachykinin 1	NM_009311|Tac1|21333|tachykinin 1	BC117081|Tac1|21333|tachykinin 1	BC119122|Tac1|21333|tachykinin 1	BC144737|Tac1|21333|tachykinin 1
mm9_v1_chr9_-_117161564_117161606	1.46235	UUUUUGC	BC108402|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK052196|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK032938|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK081921|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK051776|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK041098|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172122|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172123|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172124|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172126|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_178660|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr13_-_29045399_29045574	1.45193	UUUUUGC	AK187111|Sox4|20677|SRY-box containing gene 4	BC060669|Sox4|20677|SRY-box containing gene 4	X70298|Sox4|20677|SRY-box containing gene 4	BC052736|Sox4|20677|SRY-box containing gene 4	NM_009238|Sox4|20677|SRY-box containing gene 4	AK053840|Sox4|20677|SRY-box containing gene 4	AK028989|Sox4|20677|SRY-box containing gene 4
mm9_v1_chr2_+_179177132_179177182	1.42959	UUUUUGC	BC047991|Cdh4|12561|cadherin 4	NM_009867|Cdh4|12561|cadherin 4
mm9_v1_chr13_+_98011057_98011069	1.35092	UUUUUGC	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr14_+_77556622_77556644	1.32636	UUUUUGC	AK051821|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	NM_172813|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	AK045500|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1
mm9_v1_chr7_+_30553570_30553676	1.32498	UUUUUGC	AK145426|Zfp84|74352|zinc finger protein 84	NM_023750|Zfp84|74352|zinc finger protein 84	AK014610|Zfp84|74352|zinc finger protein 84	AK158422|Zfp84|74352|zinc finger protein 84	BC008540|Zfp84|74352|zinc finger protein 84	AK046223|Zfp84|74352|zinc finger protein 84	AK083748|Zfp84|74352|zinc finger protein 84	AK034259|Zfp84|74352|zinc finger protein 84
mm9_v1_chr6_+_15135505_15135508	1.26899	UUUUUGC	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr10_-_42894259_42894340	1.25366	UUUUUGC	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr10_+_90039435_90039495	1.23309	UUUUUGC	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr14_+_84843366_84843370	1.18213	UUUUUGC	AK142358|Pcdh17|219228|protocadherin 17	AK147265|Pcdh17|219228|protocadherin 17	NM_001013753|Pcdh17|219228|protocadherin 17
mm9_v1_chr4_+_109015660_109015680	1.14247	UUUUUGC	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr4_+_108551674_108551769	1.13232	UUUUUGC	AK082959|Rab3b|69908|RAB3B, member RAS oncogene family	NM_023537|Rab3b|69908|RAB3B, member RAS oncogene family	AK012165|Rab3b|69908|RAB3B, member RAS oncogene family	BC051918|Rab3b|69908|RAB3B, member RAS oncogene family
mm9_v1_chr6_+_14851348_14851478	1.11815	UUUUUGC	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr5_+_30559138_30559249	1.10962	UUUUUGC	NM_027652|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040494|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK079325|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK083973|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK140416|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC106097|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK048011|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK014530|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC115783|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC117551|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK122544|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040745|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm9_v1_chr2_-_6805937_6806041	1.0779	UUUUUGC	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr3_-_80606704_80606756	0.942976	UUUUUGC	AK163941|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK046861|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001039195|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001083806|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_013540|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK014389|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr12_-_36769054_36769127	0.937697	UUUUUGC	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr6_-_98978185_98978383	0.8786	UUUUUGC	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr8_-_66684789_66684808	0.867767	UUUUUGC	NM_009390|Tll1|21892|tolloid-like	U34042|Tll1|21892|tolloid-like	AK080919|Tll1|21892|tolloid-like
mm9_v1_chrX_+_106290703_106290922	0.849175	UUUUUGC	BC043055|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	NM_019989|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK218315|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	BC034161|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151871|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK165995|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK146588|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK150604|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151095|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK049929|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151501|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AJ272504|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like
mm9_v1_chr13_+_100877966_100878073	0.843832	UUUUUGC	NM_011353|Serf1|20365|small EDRK-rich factor 1	AF073517|Serf1|20365|small EDRK-rich factor 1	BC028510|Serf1|20365|small EDRK-rich factor 1	AK012379|Serf1|20365|small EDRK-rich factor 1	AK005773|Serf1|20365|small EDRK-rich factor 1
mm9_v1_chr4_-_108874844_108874876	0.810843	UUUUUGC	AK131984|Osbpl9|100273|oxysterol binding protein-like 9	NM_133885|Osbpl9|100273|oxysterol binding protein-like 9
mm9_v1_chr14_-_80171003_80171120	0.810237	UUUUUGC	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chr1_-_107253245_107253286	0.779242	UUUUUGC	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chrX_-_103124651_103124717	0.771196	UUUUUGC	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr2_-_52414072_52414117	0.770188	UUUUUGC	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr19_-_40588297_40588344	0.745032	UUUUUGC	NM_009166|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chrX_+_55283804_55283819	0.742514	UUUUUGC	AK139364|Zic3|22773|zinc finger protein of the cerebellum 3	NM_009575|Zic3|22773|zinc finger protein of the cerebellum 3
mm9_v1_chr18_+_10325174_10325177	0.735471	UUUUUGC	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr6_-_93863547_93863683	0.721027	UUUUUGC	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr12_-_56922146_56922187	0.706111	UUUUUGC	AK046680|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596972|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596973|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596974|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_001003719|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_001112714|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_019994|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1
mm9_v1_chr4_+_62626582_62626639	0.678332	UUUUUGC	NM_028326|Zfp618|72701|zinc fingerprotein 618	AK012848|Zfp618|72701|zinc fingerprotein 618
mm9_v1_chr9_-_113935832_113935880	0.67126	UUUUUGC	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr18_+_37467108_37467135	0.65724	UUUUUGC	AK036169|Pcdhb4|93875|protocadherin beta 4	AK143280|Pcdhb4|93875|protocadherin beta 4	AK160730|Pcdhb4|93875|protocadherin beta 4	NM_053129|Pcdhb4|93875|protocadherin beta 4	AK029277|Pcdhb4|93875|protocadherin beta 4	BC053098|Pcdhb4|93875|protocadherin beta 4
mm9_v1_chr6_+_96063137_96063148	0.63992	UUUUUGC	AK050001|Fam19a1|320265|family with sequence similarity 19, member A1	NM_182808|Fam19a1|320265|family with sequence similarity 19, member A1
mm9_v1_chr4_-_107973683_107973743	0.634724	UUUUUGC	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr12_-_80273320_80273473	0.633373	UUUUUGC	AF035821|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AF035208|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC009810|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC080204|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC002290|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK160624|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK002289|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	NM_016800|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog
mm9_v1_chr9_+_21001148_21001171	0.632912	UUUUUGC	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr15_+_91991704_91991862	0.628307	UUUUUGC	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr9_-_122775060_122775123	0.622128	UUUUUGC	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr12_-_40764554_40764600	0.618855	UUUUUGC	NM_001039515|Arl4a|11861|ADP-ribosylation factor-like 4A	AK161281|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr2_-_165710128_165710217	0.617073	UUUUUGC	AK038961|Zmynd8|228880|zinc finger, MYND-type containing 8	AK155864|Zmynd8|228880|zinc finger, MYND-type containing 8	BC048186|Zmynd8|228880|zinc finger, MYND-type containing 8	NM_027230|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr6_-_89312545_89312689	0.609671	UUUUUGC	D86948|Plxna1|18844|plexin A1	NM_008881|Plxna1|18844|plexin A1
mm9_v1_chr1_+_59969845_59969868	0.593714	UUUUUGC	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr12_-_81213930_81214002	0.592092	UUUUUGC	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr10_+_17443024_17443226	0.590994	UUUUUGC	AK131664|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	AK133791|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	NM_010828|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	BC057126|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	U86445|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	Y15163|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm9_v1_chrX_-_34442878_34442893	0.589097	UUUUUGC	AK042690|Nkrf|77286|NF-kappaB repressing factor	NM_029891|Nkrf|77286|NF-kappaB repressing factor
mm9_v1_chr8_-_63433528_63433596	0.588154	UUUUUGC	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr10_-_57252252_57252346	0.586602	UUUUUGC	AF181685|Serinc1|56442|serine incorporator 1	AK148745|Serinc1|56442|serine incorporator 1	AK050514|Serinc1|56442|serine incorporator 1	AB029500|Serinc1|56442|serine incorporator 1	AK088340|Serinc1|56442|serine incorporator 1	AK133668|Serinc1|56442|serine incorporator 1	AK133975|Serinc1|56442|serine incorporator 1	AK161707|Serinc1|56442|serine incorporator 1	AK005203|Serinc1|56442|serine incorporator 1	AK167817|Serinc1|56442|serine incorporator 1	AK002847|Serinc1|56442|serine incorporator 1	AK141574|Serinc1|56442|serine incorporator 1	AK160498|Serinc1|56442|serine incorporator 1	AK159436|Serinc1|56442|serine incorporator 1	BC006940|Serinc1|56442|serine incorporator 1	NM_019760|Serinc1|56442|serine incorporator 1
mm9_v1_chr8_+_106694341_106694482	0.578445	UUUUUGC	BC030426|Bean1|65115|brain expressed, associated with Nedd4, 1	AK134633|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141922|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141924|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141925|Bean1|65115|brain expressed, associated with Nedd4, 1	BC138184|Bean1|65115|brain expressed, associated with Nedd4, 1
mm9_v1_chr2_-_77541328_77541435	0.573446	UUUUUGC	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr4_-_117963950_117964031	0.552883	UUUUUGC	NM_011213|Ptprf|19268|protein tyrosine phosphatase, receptor type, F
mm9_v1_chr5_-_92707164_92707208	0.54882	UUUUUGC	AB162194|Naaa|67111|N-acylethanolamine acid amidase	BC004572|Naaa|67111|N-acylethanolamine acid amidase	AK014438|Naaa|67111|N-acylethanolamine acid amidase	AK017141|Naaa|67111|N-acylethanolamine acid amidase	AK133485|Naaa|67111|N-acylethanolamine acid amidase	AK146191|Naaa|67111|N-acylethanolamine acid amidase	AK008776|Naaa|67111|N-acylethanolamine acid amidase	AK133658|Naaa|67111|N-acylethanolamine acid amidase	NM_001163687|Naaa|67111|N-acylethanolamine acid amidase	NM_025972|Naaa|67111|N-acylethanolamine acid amidase
mm9_v1_chr9_+_96159666_96159703	0.548813	UUUUUGC	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chrX_-_133403050_133403118	0.54844	UUUUUGC	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr9_+_54711492_54711604	0.547884	UUUUUGC	NM_022655|Ireb2|64602|iron responsive element binding protein 2	BC044665|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr9_+_45238375_45238483	0.542429	UUUUUGC	NM_001081270|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AK147531|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487345|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487347|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1
mm9_v1_chr12_+_85455277_85455306	0.539878	UUUUUGC	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr11_+_29273673_29273774	0.531281	UUUUUGC	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr15_+_32174546_32174624	0.511656	UUUUUGC	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr7_-_147340532_147340650	0.509841	UUUUUGC	BC056484|Sprn|212518|shadow of prion protein	NM_183147|Sprn|212518|shadow of prion protein	AK049995|Sprn|212518|shadow of prion protein
mm9_v1_chr16_+_38089086_38089192	0.505293	UUUUUGC	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr4_-_104782444_104782511	0.503735	UUUUUGC	NM_178143|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138565|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138566|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm9_v1_chr12_+_37040755_37040991	0.494399	UUUUUGC	NM_025312|Sostdc1|66042|sclerostin domain containing 1	AK002240|Sostdc1|66042|sclerostin domain containing 1	AK002396|Sostdc1|66042|sclerostin domain containing 1	AK007893|Sostdc1|66042|sclerostin domain containing 1	AK007967|Sostdc1|66042|sclerostin domain containing 1	AY255635|Sostdc1|66042|sclerostin domain containing 1	AY134666|Sostdc1|66042|sclerostin domain containing 1	BC021458|Sostdc1|66042|sclerostin domain containing 1	AB059271|Sostdc1|66042|sclerostin domain containing 1	AK007935|Sostdc1|66042|sclerostin domain containing 1
mm9_v1_chr2_-_51004604_51004631	0.485062	UUUUUGC	BC009002|Rnd3|74194|Rho family GTPase 3	AK035195|Rnd3|74194|Rho family GTPase 3	AK048635|Rnd3|74194|Rho family GTPase 3	AK011442|Rnd3|74194|Rho family GTPase 3	NM_028810|Rnd3|74194|Rho family GTPase 3
mm9_v1_chr7_-_30836383_30836414	0.481315	UUUUUGC	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr4_+_34011567_34011625	0.475407	UUUUUGC	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chr17_-_23330163_23330200	0.473096	UUUUUGC	BC061205|Zfp40|22700|zinc finger protein 40	AK164585|Zfp40|22700|zinc finger protein 40	BC065097|Zfp40|22700|zinc finger protein 40	NM_009555|Zfp40|22700|zinc finger protein 40	AK049894|Zfp40|22700|zinc finger protein 40
mm9_v1_chr3_-_49561168_49561243	0.471613	UUUUUGC	AF416735|Pcdh18|73173|protocadherin 18	AK173204|Pcdh18|73173|protocadherin 18	BC052198|Pcdh18|73173|protocadherin 18	AK036560|Pcdh18|73173|protocadherin 18	AK032820|Pcdh18|73173|protocadherin 18	NM_130448|Pcdh18|73173|protocadherin 18
mm9_v1_chr2_-_148558110_148558202	0.468364	UUUUUGC	AK078224|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC038362|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	AK083184|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	NM_019632|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC049874|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm9_v1_chr2_-_121332347_121332403	0.460704	UUUUUGC	BC005728|Mfap1b|100034361|microfibrillar-associated protein 1B	AK012688|Mfap1a|67532|microfibrillar-associated protein 1A	AK014483|Mfap1a|67532|microfibrillar-associated protein 1A	AK077604|Mfap1a|67532|microfibrillar-associated protein 1A	AK088766|Mfap1a|67532|microfibrillar-associated protein 1A	AK032586|Mfap1a|67532|microfibrillar-associated protein 1A	AK050561|Mfap1a|67532|microfibrillar-associated protein 1A	AK161000|Mfap1a|67532|microfibrillar-associated protein 1A	NM_026220|Mfap1a|67532|microfibrillar-associated protein 1A	AK168801|Mfap1a|67532|microfibrillar-associated protein 1A
mm9_v1_chr12_-_55963776_55963890	0.45759	UUUUUGC	AK147174|Cfl2|12632|cofilin 2, muscle	BC007138|Cfl2|12632|cofilin 2, muscle	AK004659|Cfl2|12632|cofilin 2, muscle	L29468|Cfl2|12632|cofilin 2, muscle	NM_007688|Cfl2|12632|cofilin 2, muscle
mm9_v1_chr19_-_28085534_28085655	0.45668	UUUUUGC	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr11_+_52578152_52578230	0.455826	UUUUUGC	AK046350|Fstl4|320027|follistatin-like 4	AK081114|Fstl4|320027|follistatin-like 4	AF374459|Fstl4|320027|follistatin-like 4	NM_177059|Fstl4|320027|follistatin-like 4	BC132353|Fstl4|320027|follistatin-like 4	BC144824|Fstl4|320027|follistatin-like 4
mm9_v1_chr11_-_102308966_102308985	0.43239	UUUUUGC	NM_199200|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr18_-_35374663_35374683	0.415385	UUUUUGC	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr11_-_62270815_62270835	0.403505	UUUUUGC	AK035813|Ncor1|20185|nuclear receptor co-repressor 1	AK077420|Ncor1|20185|nuclear receptor co-repressor 1	NM_011308|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr5_-_139060952_139060970	0.40308	UUUUUGC	AB024005|Zfp68|24135|zinc finger protein 68	BC018171|Zfp68|24135|zinc finger protein 68	AK013868|Zfp68|24135|zinc finger protein 68	NM_001044747|Zfp68|24135|zinc finger protein 68	NM_001163797|Zfp68|24135|zinc finger protein 68	NM_013844|Zfp68|24135|zinc finger protein 68
mm9_v1_chr11_-_20731016_20731238	0.39378	UUUUUGC	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr10_+_110601745_110601988	0.386403	UUUUUGC	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr3_-_133207209_133207353	0.383967	UUUUUGC	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr19_+_26822892_26822948	0.382475	UUUUUGC	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr11_+_105451296_105451348	0.378789	UUUUUGC	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr2_+_37307751_37307773	0.374533	UUUUUGC	AK044346|Rabgap1|227800|RAB GTPase activating protein 1	NM_001033960|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr9_+_72510153_72510370	0.37266	UUUUUGC	D85414|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	NM_010890|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088767|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK133838|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK144240|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK169582|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088620|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC138813|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK050517|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK080349|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK160570|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK122203|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC080710|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr10_+_95403283_95403412	0.371631	UUUUUGC	AK042055|Eea1|216238|early endosome antigen 1	NM_001001932|Eea1|216238|early endosome antigen 1	AK082278|Eea1|216238|early endosome antigen 1	AK163235|Eea1|216238|early endosome antigen 1	BC021363|Eea1|216238|early endosome antigen 1	BC075637|Eea1|216238|early endosome antigen 1	AK046231|Eea1|216238|early endosome antigen 1	AK040844|Eea1|216238|early endosome antigen 1
mm9_v1_chr10_+_106708886_106708980	0.355467	UUUUUGC	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr2_-_7317513_7317626	0.352469	UUUUUGC	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr1_-_52290058_52290076	0.351286	UUUUUGC	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr13_+_3537308_3537410	0.34813	UUUUUGC	NM_008112|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK143681|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK150655|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK167659|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK149958|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK078514|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK079690|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK090083|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK137761|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK143633|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK013104|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK159734|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK166317|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK007871|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK078144|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK083063|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK150356|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK152250|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	BC055341|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	BC024971|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK153381|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK169299|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr12_-_88225714_88225776	0.348047	UUUUUGC	AK155373|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK171043|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK160059|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK140441|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK082791|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AF525300|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK084782|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK173282|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	NM_145836|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK032622|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK032366|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene
mm9_v1_chr1_-_155334737_155334791	0.340771	UUUUUGC	U91922|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	BC064082|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	BC089159|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK141824|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK148423|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK169735|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK013423|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	BC033911|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	NM_007842|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm9_v1_chr14_+_73542316_73542336	0.339509	UUUUUGC	NM_001170694|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	NM_134083|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr7_-_85722668_85722860	0.338523	UUUUUGC	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr9_-_20297116_20297218	0.332217	UUUUUGC	AK036912|Zfp426|235028|zinc finger protein 426	AK048284|Zfp426|235028|zinc finger protein 426	BC023931|Zfp426|235028|zinc finger protein 426	BC024805|Zfp426|235028|zinc finger protein 426	AK220563|Zfp426|235028|zinc finger protein 426	AK085144|Zfp426|235028|zinc finger protein 426	NM_001110309|Zfp426|235028|zinc finger protein 426	NM_146221|Zfp426|235028|zinc finger protein 426
mm9_v1_chr9_-_56265833_56265857	0.332106	UUUUUGC	AK035440|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	AK048912|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	NM_172924|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene
mm9_v1_chr19_+_45005608_45005655	0.330173	UUUUUGC	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr8_-_9976197_9976322	0.327771	UUUUUGC	AK083353|Lig4|319583|ligase IV, DNA, ATP-dependent	AK148081|Lig4|319583|ligase IV, DNA, ATP-dependent	NM_176953|Lig4|319583|ligase IV, DNA, ATP-dependent
mm9_v1_chr9_-_24307580_24307676	0.325938	UUUUUGC	NM_172920|Dpy19l1|244745|dpy-19-like 1 (C. elegans)
mm9_v1_chr2_-_39046224_39046253	0.319996	UUUUUGC	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chr1_-_36301093_36301156	0.319011	UUUUUGC	BC062936|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	BC068283|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	AK050532|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	NM_198899|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1
mm9_v1_chr7_-_89079335_89079355	0.318912	UUUUUGC	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr4_+_137806293_137806394	0.317247	UUUUUGC	DQ832275|Sh2d5|230863|SH2 domain containing 5	NM_001099631|Sh2d5|230863|SH2 domain containing 5	BC036961|Sh2d5|230863|SH2 domain containing 5	AK032598|Sh2d5|230863|SH2 domain containing 5
mm9_v1_chr2_+_115407409_115407515	0.305724	UUUUUGC	NM_001145898|BC052040|399568|cDNA sequence BC052040	NM_207264|BC052040|399568|cDNA sequence BC052040	BC052040|BC052040|399568|cDNA sequence BC052040	AK154260|BC052040|399568|cDNA sequence BC052040	AK167625|BC052040|399568|cDNA sequence BC052040	AK090080|BC052040|399568|cDNA sequence BC052040
mm9_v1_chr14_-_62175657_62175722	0.302058	UUUUUGC	AK018153|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene	NM_025697|6330409N04Rik|66674|RIKEN cDNA 6330409N04 gene
mm9_v1_chr10_+_36226612_36226726	0.300048	UUUUUGC	NM_001081208|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147490|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC147493|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC150973|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	BC158004|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5	AK086098|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm9_v1_chr19_-_24551914_24551976	0.298347	UUUUUGC	AK018219|Fam122a|68034|family with sequence similarity 122, member A	BC028637|Fam122a|68034|family with sequence similarity 122, member A	AK172089|Fam122a|68034|family with sequence similarity 122, member A	AK077654|Fam122a|68034|family with sequence similarity 122, member A	AK011741|Fam122a|68034|family with sequence similarity 122, member A	BC083062|Fam122a|68034|family with sequence similarity 122, member A	AK005219|Fam122a|68034|family with sequence similarity 122, member A	AK033646|Fam122a|68034|family with sequence similarity 122, member A	NM_026520|Fam122a|68034|family with sequence similarity 122, member A
mm9_v1_chr13_+_77274778_77274859	0.292016	UUUUUGC	NM_001081353|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	NM_001145676|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK165312|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK050886|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK008859|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC089469|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC151066|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC157949|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK143619|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene
mm9_v1_chr17_-_80879792_80879792	0.289495	UUUUUGC	AK140310|Sos1|20662|son of sevenless homolog 1 (Drosophila)	NM_009231|Sos1|20662|son of sevenless homolog 1 (Drosophila)
mm9_v1_chr11_-_116714406_116714411	0.285374	UUUUUGC	AK165670|Srsf2|20382|serine/arginine-rich splicing factor 2	NM_011358|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr8_-_60131768_60131885	0.285263	UUUUUGC	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr10_-_60215524_60215546	0.285044	UUUUUGC	AK034133|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	AF326986|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	AK157868|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	NM_023596|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	AK051317|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3
mm9_v1_chr16_+_3744037_3744202	0.279866	UUUUUGC	NM_148924|Zfp263|74120|zinc finger protein 263	AK004765|Zfp263|74120|zinc finger protein 263	AK159455|Zfp263|74120|zinc finger protein 263	AF499776|Zfp263|74120|zinc finger protein 263	BC060162|Zfp263|74120|zinc finger protein 263
mm9_v1_chr11_+_20991321_20991416	0.276457	UUUUUGC	AK151660|Peli1|67245|pellino 1	AK152900|Peli1|67245|pellino 1	AK152997|Peli1|67245|pellino 1	AK153372|Peli1|67245|pellino 1	NM_023324|Peli1|67245|pellino 1	AK167525|Peli1|67245|pellino 1	BC026695|Peli1|67245|pellino 1
mm9_v1_chrX_+_156065141_156065596	0.276062	UUUUUGC	AK049182|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK172022|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK080930|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135727|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK038540|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK208632|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr13_-_104124527_104124573	0.274328	UUUUUGC	AK081750|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK040801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK044801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK090136|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK046702|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK077719|Mast4|328329|microtubule associated serine/threonine kinase family member 4	NM_175171|Mast4|328329|microtubule associated serine/threonine kinase family member 4
mm9_v1_chr12_+_53800369_53800393	0.27138	UUUUUGC	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr4_-_129374039_129374084	0.267387	UUUUUGC	BC037095|Tmem39b|230770|transmembrane protein 39b	BC049790|Tmem39b|230770|transmembrane protein 39b	NM_199305|Tmem39b|230770|transmembrane protein 39b
mm9_v1_chr1_-_165333739_165333824	0.266602	UUUUUGC	AK165909|Gorab|98376|golgin, RAB6-interacting	BC119132|Gorab|98376|golgin, RAB6-interacting	BC119134|Gorab|98376|golgin, RAB6-interacting	AK169151|Gorab|98376|golgin, RAB6-interacting	AK043953|Gorab|98376|golgin, RAB6-interacting	NM_178883|Gorab|98376|golgin, RAB6-interacting	AK039170|Gorab|98376|golgin, RAB6-interacting	AK170455|Gorab|98376|golgin, RAB6-interacting
mm9_v1_chr8_+_112302530_112302620	0.26184	UUUUUGC	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr8_+_129587894_129588193	0.257251	UUUUUGC	BC090616|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001122850|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_033620|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK052416|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053762|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053563|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK137690|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053576|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY026057|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC141187|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC145508|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr1_-_159342713_159342735	0.255443	UUUUUGC	AK039584|Rasal2|226525|RAS protein activator like 2	NM_177644|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr1_-_120207674_120207826	0.253924	UUUUUGC	AK181409|Tsn|22099|translin	AK183078|Tsn|22099|translin	AK184665|Tsn|22099|translin	AK189586|Tsn|22099|translin	AK198107|Tsn|22099|translin	AK199692|Tsn|22099|translin	AK202525|Tsn|22099|translin	AK010737|Tsn|22099|translin	AF234179|Tsn|22099|translin	NM_011650|Tsn|22099|translin	X81464|Tsn|22099|translin	BC004615|Tsn|22099|translin	AK165598|Tsn|22099|translin	AK011220|Tsn|22099|translin	AK150529|Tsn|22099|translin	AK151448|Tsn|22099|translin
mm9_v1_chr7_+_128177958_128178339	0.246199	UUUUUGC	AJ278576|Mettl9|59052|methyltransferase like 9	NM_021554|Mettl9|59052|methyltransferase like 9	BC068124|Mettl9|59052|methyltransferase like 9	AB041664|Mettl9|59052|methyltransferase like 9	AK075586|Mettl9|59052|methyltransferase like 9
mm9_v1_chr8_-_97855675_97855849	0.241636	UUUUUGC	BC033441|Zfp319|79233|zinc finger protein 319	AK052274|Zfp319|79233|zinc finger protein 319	AK089263|Zfp319|79233|zinc finger protein 319	AK048624|Zfp319|79233|zinc finger protein 319	BC059823|Zfp319|79233|zinc finger protein 319	NM_024467|Zfp319|79233|zinc finger protein 319
mm9_v1_chr19_+_16207300_16207320	0.241061	UUUUUGC	AK147393|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide	NM_008139|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr16_-_91011339_91011552	0.238798	UUUUUGC	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr12_+_31269290_31269335	0.236106	UUUUUGC	AK166323|Tmem18|211986|transmembrane protein 18	NM_172049|Tmem18|211986|transmembrane protein 18	AK133493|Tmem18|211986|transmembrane protein 18	AK160817|Tmem18|211986|transmembrane protein 18	AK170496|Tmem18|211986|transmembrane protein 18	BC024093|Tmem18|211986|transmembrane protein 18
mm9_v1_chr4_-_82151180_82151288	0.235465	UUUUUGC	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chrX_-_49967112_49967151	0.233231	UUUUUGC	AK159394|Gpc3|14734|glypican 3	AK159435|Gpc3|14734|glypican 3	AK146702|Gpc3|14734|glypican 3	AK077942|Gpc3|14734|glypican 3	AK159764|Gpc3|14734|glypican 3	AK168402|Gpc3|14734|glypican 3	NM_016697|Gpc3|14734|glypican 3
mm9_v1_chr11_+_17111895_17111966	0.22973	UUUUUGC	NM_178909|Wdr92|103784|WD repeat domain 92	AK088218|Wdr92|103784|WD repeat domain 92	AK047691|Wdr92|103784|WD repeat domain 92	AK142228|Wdr92|103784|WD repeat domain 92	AK033294|Wdr92|103784|WD repeat domain 92	BC096540|Wdr92|103784|WD repeat domain 92
mm9_v1_chrX_-_49034778_49034778	0.227231	UUUUUGC	NM_001077202|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr13_+_60703261_60703571	0.224125	UUUUUGC	NM_029653|Dapk1|69635|death associated protein kinase 1	AY245540|Dapk1|69635|death associated protein kinase 1	AY245541|Dapk1|69635|death associated protein kinase 1	BC057317|Dapk1|69635|death associated protein kinase 1	BC060161|Dapk1|69635|death associated protein kinase 1	AK009701|Dapk1|69635|death associated protein kinase 1	AK145922|Dapk1|69635|death associated protein kinase 1	NM_134062|Dapk1|69635|death associated protein kinase 1
mm9_v1_chr2_-_105239368_105239475	0.219985	UUUUUGC	BC049108|Rcn1|19672|reticulocalbin 1	AK159973|Rcn1|19672|reticulocalbin 1	AK017494|Rcn1|19672|reticulocalbin 1	D13003|Rcn1|19672|reticulocalbin 1	AK133971|Rcn1|19672|reticulocalbin 1	NM_009037|Rcn1|19672|reticulocalbin 1
mm9_v1_chr1_-_16646922_16646999	0.218597	UUUUUGC	AK012909|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK039746|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	BC009104|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	NM_026456|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK013089|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK011958|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1
mm9_v1_chr3_+_101180976_101181070	0.218217	UUUUUGC	AK083000|Igsf3|78908|immunoglobulin superfamily, member 3	AK084011|Igsf3|78908|immunoglobulin superfamily, member 3	AK129151|Igsf3|78908|immunoglobulin superfamily, member 3	NM_207205|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr2_-_105744649_105744720	0.216991	UUUUUGC	AJ276004|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK039758|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	NM_023876|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK034040|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK020742|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK034529|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK039447|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK079069|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK037104|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK168964|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)
mm9_v1_chr17_+_93598761_93598761	0.215987	UUUUUGC	BC057344|Adcyap1|11516|adenylate cyclase activating polypeptide 1	NM_009625|Adcyap1|11516|adenylate cyclase activating polypeptide 1
mm9_v1_chr9_+_81757308_81757350	0.215547	UUUUUGC	BC096613|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK082395|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK166209|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK043929|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	NM_175213|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)
mm9_v1_chr13_-_64376186_64376295	0.213399	UUUUUGC	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr17_-_24987239_24987278	0.212655	UUUUUGC	AK141973|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	AK157292|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	NM_023480|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1	BC011330|Fahd1|68636|fumarylacetoacetate hydrolase domain containing 1
mm9_v1_chr6_+_3448385_3448452	0.210762	UUUUUGC	NM_001167750|Ccdc132|73288|coiled-coil domain containing 132	NM_001167751|Ccdc132|73288|coiled-coil domain containing 132	NM_024260|Ccdc132|73288|coiled-coil domain containing 132	AY254697|Ccdc132|73288|coiled-coil domain containing 132	AK075898|Ccdc132|73288|coiled-coil domain containing 132	AK042031|Ccdc132|73288|coiled-coil domain containing 132	AK018415|Ccdc132|73288|coiled-coil domain containing 132	BC043092|Ccdc132|73288|coiled-coil domain containing 132	AK129458|Ccdc132|73288|coiled-coil domain containing 132	BC036294|Ccdc132|73288|coiled-coil domain containing 132
mm9_v1_chr14_-_19164241_19164397	0.207462	UUUUUGC	BC003781|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK148266|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	X92665|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	AK090177|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)	NM_009455|Ube2e1|22194|ubiquitin-conjugating enzyme E2E 1, UBC4/5 homolog (yeast)
mm9_v1_chr1_-_108610861_108610866	0.205767	UUUUUGC	AK049473|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_009741|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_177410|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr16_-_16359122_16359124	0.202279	UUUUUGC	NM_001025947|Dnm1l|74006|dynamin 1-like	NM_152816|Dnm1l|74006|dynamin 1-like
mm9_v1_chr6_-_71773747_71773805	0.200431	UUUUUGC	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chrX_-_132706705_132706789	0.198734	UUUUUGC	AK137039|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK012030|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK027927|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK083347|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK156414|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK014459|Tceal8|66684|transcription elongation factor A (SII)-like 8	BC027269|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK076203|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_001168578|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_025703|Tceal8|66684|transcription elongation factor A (SII)-like 8
mm9_v1_chr2_+_109532592_109532697	0.197067	UUUUUGC	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr11_-_97436439_97436456	0.190631	UUUUUGC	AF040944|Srcin1|56013|SRC kinase signaling inhibitor 1	NM_018873|Srcin1|56013|SRC kinase signaling inhibitor 1	U59873|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr7_+_117205194_117205269	0.187719	UUUUUGC	NM_009281|Zfp143|20841|zinc finger protein 143	AK028056|Zfp143|20841|zinc finger protein 143	AK029078|Zfp143|20841|zinc finger protein 143	BC037658|Zfp143|20841|zinc finger protein 143	AF011758|Zfp143|20841|zinc finger protein 143
mm9_v1_chr19_+_26679649_26679686	0.185553	UUUUUGC	BC075641|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	NM_011416|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK020092|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr2_-_102741782_102741821	0.184876	UUUUUGC	NM_001039150|Cd44|12505|CD44 antigen	NM_001039151|Cd44|12505|CD44 antigen	NM_001177785|Cd44|12505|CD44 antigen	NM_001177786|Cd44|12505|CD44 antigen	NM_001177787|Cd44|12505|CD44 antigen	NM_009851|Cd44|12505|CD44 antigen
mm9_v1_chr15_-_64214427_64214520	0.184033	UUUUUGC	BC094581|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	NM_010026|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr4_-_56960287_56960321	0.18233	UUUUUGC	AK052826|D730040F13Rik|242474|RIKEN cDNA D730040F13 gene	AK085364|D730040F13Rik|242474|RIKEN cDNA D730040F13 gene	NM_175518|D730040F13Rik|242474|RIKEN cDNA D730040F13 gene
mm9_v1_chr1_+_134212642_134212774	0.182226	UUUUUGC	NM_001195025|Nuak2|74137|NUAK family, SNF1-like kinase, 2	NM_028778|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK034082|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK004737|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK033672|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC046833|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC033302|Nuak2|74137|NUAK family, SNF1-like kinase, 2
mm9_v1_chr12_-_103196366_103196464	0.180905	UUUUUGC	AF537188|Atxn3|110616|ataxin 3	AK030842|Atxn3|110616|ataxin 3	AK008675|Atxn3|110616|ataxin 3	BC087880|Atxn3|110616|ataxin 3	BC049743|Atxn3|110616|ataxin 3	NM_001167914|Atxn3|110616|ataxin 3	NM_029705|Atxn3|110616|ataxin 3
mm9_v1_chr7_-_88974235_88974382	0.176929	UUUUUGC	BC072618|Btbd1|83962|BTB (POZ) domain containing 1	NM_146193|Btbd1|83962|BTB (POZ) domain containing 1	BC087937|Btbd1|83962|BTB (POZ) domain containing 1	AK088345|Btbd1|83962|BTB (POZ) domain containing 1
mm9_v1_chr4_-_151235861_151235879	0.174915	UUUUUGC	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr9_-_99469275_99469317	0.165204	UUUUUGC	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr12_-_85534964_85534979	0.1629	UUUUUGC	AK155547|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK171272|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163502|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK081554|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr11_+_62944973_62945074	0.16232	UUUUUGC	NM_008885|Pmp22|18858|peripheral myelin protein 22	M32240|Pmp22|18858|peripheral myelin protein 22	BC010765|Pmp22|18858|peripheral myelin protein 22	AK076005|Pmp22|18858|peripheral myelin protein 22	AK171745|Pmp22|18858|peripheral myelin protein 22
mm9_v1_chr6_-_94233855_94233910	0.159893	UUUUUGC	AK046635|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC095943|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001029850|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_010367|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK147358|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr5_-_51945054_51945159	0.157484	UUUUUGC	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr4_+_139178802_139178820	0.151315	UUUUUGC	BC060650|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1	NM_175438|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr14_-_67627598_67627723	0.149898	UUUUUGC	AK220143|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC049081|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK139950|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK004667|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC085237|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK018668|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK155040|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AY057069|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK013467|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK007920|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AF067395|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK168482|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK169391|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	NM_009761|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like
mm9_v1_chr13_+_58907953_58907974	0.149836	UUUUUGC	NM_008745|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr7_-_112959591_112959616	0.147719	UUUUUGC	NM_025301|Mrpl17|27397|mitochondrial ribosomal protein L17
mm9_v1_chr12_+_4133370_4133572	0.146997	UUUUUGC	NM_001159536|Adcy3|104111|adenylate cyclase 3	NM_001159537|Adcy3|104111|adenylate cyclase 3	AK122298|Adcy3|104111|adenylate cyclase 3	BC057113|Adcy3|104111|adenylate cyclase 3	BC057316|Adcy3|104111|adenylate cyclase 3
mm9_v1_chr17_+_33226311_33226311	0.143949	UUUUUGC	NM_001024950|Zfp563|240068|zinc finger protein 563
mm9_v1_chr5_+_136108487_136108731	0.140826	UUUUUGC	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr5_+_92566909_92567009	0.139737	UUUUUGC	AK166587|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	BC016069|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	NM_019490|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK156070|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK144638|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK172425|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK168433|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)
mm9_v1_chr11_+_49660238_49660298	0.138951	UUUUUGC	NM_001163671|Mapk9|26420|mitogen-activated protein kinase 9	NM_001163672|Mapk9|26420|mitogen-activated protein kinase 9	NM_016961|Mapk9|26420|mitogen-activated protein kinase 9	NM_207692|Mapk9|26420|mitogen-activated protein kinase 9	AK031959|Mapk9|26420|mitogen-activated protein kinase 9	AK090057|Mapk9|26420|mitogen-activated protein kinase 9	AK145083|Mapk9|26420|mitogen-activated protein kinase 9	BC028341|Mapk9|26420|mitogen-activated protein kinase 9
mm9_v1_chr5_+_69948162_69948312	0.137876	UUUUUGC	AK160956|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	NM_172711|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK032597|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK165012|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK084627|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK053420|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK140534|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	BC057962|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)	AK047411|Guf1|231279|GUF1 GTPase homolog (S. cerevisiae)
mm9_v1_chr5_-_124199380_124199422	0.132537	UUUUUGC	BC008229|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK012697|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK077854|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK166941|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK168476|Rsrc2|208606|arginine/serine-rich coiled-coil 2	AK017771|Rsrc2|208606|arginine/serine-rich coiled-coil 2	NM_001005523|Rsrc2|208606|arginine/serine-rich coiled-coil 2	NM_001005525|Rsrc2|208606|arginine/serine-rich coiled-coil 2	NM_025438|Rsrc2|208606|arginine/serine-rich coiled-coil 2
mm9_v1_chr1_-_23389950_23390192	0.130979	UUUUUGC	NM_001081079|Ogfrl1|70155|opioid growth factor receptor-like 1
mm9_v1_chr3_-_90294832_90294961	0.130669	UUUUUGC	AF086838|Snapin|20615|SNAP-associated protein	AK152057|Snapin|20615|SNAP-associated protein	BC048691|Snapin|20615|SNAP-associated protein	AK007458|Snapin|20615|SNAP-associated protein	AK044085|Snapin|20615|SNAP-associated protein	AK048007|Snapin|20615|SNAP-associated protein	AK135006|Snapin|20615|SNAP-associated protein	AK077840|Snapin|20615|SNAP-associated protein	AK080718|Snapin|20615|SNAP-associated protein	AK035147|Snapin|20615|SNAP-associated protein	AK050151|Snapin|20615|SNAP-associated protein	NM_133854|Snapin|20615|SNAP-associated protein
mm9_v1_chr15_+_12134833_12134872	0.128916	UUUUUGC	AK076161|Mtmr12|268783|myotubularin related protein 12	BC054352|Mtmr12|268783|myotubularin related protein 12	NM_172958|Mtmr12|268783|myotubularin related protein 12	AK050099|Mtmr12|268783|myotubularin related protein 12	AK050236|Mtmr12|268783|myotubularin related protein 12	BC042573|Mtmr12|268783|myotubularin related protein 12
mm9_v1_chr16_-_16560240_16560303	0.127904	UUUUUGC	BC145523|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402611|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139232|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402613|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139234|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK034504|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK134961|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr5_-_137043082_137043316	0.127543	UUUUUGC	BC054370|Cux1|13047|cut-like homeobox 1	AK220173|Cux1|13047|cut-like homeobox 1	BC014289|Cux1|13047|cut-like homeobox 1	AK133543|Cux1|13047|cut-like homeobox 1	AK098096|Cux1|13047|cut-like homeobox 1	BC090847|Cux1|13047|cut-like homeobox 1	U68542|Cux1|13047|cut-like homeobox 1	NM_198602|Cux1|13047|cut-like homeobox 1	NM_009986|Cux1|13047|cut-like homeobox 1
mm9_v1_chr11_-_72990492_72990557	0.125825	UUUUUGC	NM_001168470|Tmem93|66048|transmembrane protein 93	BC022104|Tmem93|66048|transmembrane protein 93	AK002385|Tmem93|66048|transmembrane protein 93	AK012769|Tmem93|66048|transmembrane protein 93	AK003198|Tmem93|66048|transmembrane protein 93	AK004149|Tmem93|66048|transmembrane protein 93	NM_025318|Tmem93|66048|transmembrane protein 93
mm9_v1_chr18_-_16967557_16967557	0.124691	UUUUUGC	NM_007664|Cdh2|12558|cadherin 2
mm9_v1_chr2_-_59720568_59720662	0.120814	UUUUUGC	AK178836|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	AK011391|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	BC050792|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	BC061948|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	NM_001159636|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	NM_028118|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1
mm9_v1_chr12_+_33063653_33063723	0.120712	UUUUUGC	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr7_+_104230260_104230335	0.119967	UUUUUGC	AF104244|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	NM_001162477|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	NM_010248|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103524|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103525|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103526|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103527|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	AB018414|Gab2|14389|growth factor receptor bound protein 2-associated protein 2
mm9_v1_chr14_-_65881225_65881304	0.116648	UUUUUGC	BC066186|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC103714|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK134261|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK160554|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC050965|Fzd3|14365|frizzled homolog 3 (Drosophila)	NM_021458|Fzd3|14365|frizzled homolog 3 (Drosophila)
mm9_v1_chr7_+_108812146_108812327	0.115045	UUUUUGC	AK006072|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK138593|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK159314|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK154577|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK049768|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK028101|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK141383|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	U09874|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	BC048175|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	NM_009191|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK032421|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK145641|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)
mm9_v1_chr19_+_53674862_53674958	0.114856	UUUUUGC	AK165878|Smc3|13006|structural maintenace of chromosomes 3	NM_007790|Smc3|13006|structural maintenace of chromosomes 3	AK164387|Smc3|13006|structural maintenace of chromosomes 3	AK143996|Smc3|13006|structural maintenace of chromosomes 3	AK140705|Smc3|13006|structural maintenace of chromosomes 3	BC062935|Smc3|13006|structural maintenace of chromosomes 3	AF141294|Smc3|13006|structural maintenace of chromosomes 3	AF047601|Smc3|13006|structural maintenace of chromosomes 3
mm9_v1_chr1_+_130140700_130141098	0.112995	UUUUUGC	AK029431|Ubxn4|67812|UBX domain protein 4	BC019795|Ubxn4|67812|UBX domain protein 4	BC012271|Ubxn4|67812|UBX domain protein 4	NM_026390|Ubxn4|67812|UBX domain protein 4	AK011233|Ubxn4|67812|UBX domain protein 4	AK012824|Ubxn4|67812|UBX domain protein 4	AK019371|Ubxn4|67812|UBX domain protein 4	AK148333|Ubxn4|67812|UBX domain protein 4	AK032206|Ubxn4|67812|UBX domain protein 4	AK147795|Ubxn4|67812|UBX domain protein 4	AK075716|Ubxn4|67812|UBX domain protein 4
mm9_v1_chr11_-_100981015_100981199	0.110338	UUUUUGC	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr9_-_50576208_50576266	0.105926	UUUUUGC	AJ250230|1110032A03Rik|68721|RIKEN cDNA 1110032A03 gene	AK166202|1110032A03Rik|68721|RIKEN cDNA 1110032A03 gene	BC032012|1110032A03Rik|68721|RIKEN cDNA 1110032A03 gene	AK158460|1110032A03Rik|68721|RIKEN cDNA 1110032A03 gene	AK043513|1110032A03Rik|68721|RIKEN cDNA 1110032A03 gene	NM_023483|1110032A03Rik|68721|RIKEN cDNA 1110032A03 gene
mm9_v1_chr14_+_52898820_52898820	0.105576	UUUUUGC	NM_023434|Tox4|268741|TOX high mobility group box family member 4
mm9_v1_chr12_-_40763924_40763965	0.100346	UUUUUGC	BC029234|Arl4a|11861|ADP-ribosylation factor-like 4A	BC003725|Arl4a|11861|ADP-ribosylation factor-like 4A	AK168618|Arl4a|11861|ADP-ribosylation factor-like 4A	AK048606|Arl4a|11861|ADP-ribosylation factor-like 4A	AK137751|Arl4a|11861|ADP-ribosylation factor-like 4A	NM_007487|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr1_+_39957733_39957796	0.0997579	UUUUUGC	NM_008696|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr10_-_33816255_33816324	0.0953433	UUUUUGC	AK161070|Fam26e|103511|family with sequence similarity 26, member E	AK052861|Fam26e|103511|family with sequence similarity 26, member E	AK078850|Fam26e|103511|family with sequence similarity 26, member E	BC025893|Fam26e|103511|family with sequence similarity 26, member E	AK085925|Fam26e|103511|family with sequence similarity 26, member E	NM_178908|Fam26e|103511|family with sequence similarity 26, member E
mm9_v1_chr9_+_74885522_74885560	0.0927225	UUUUUGC	BC040206|Arpp19|59046|cAMP-regulated phosphoprotein 19	NM_021548|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr2_+_166619249_166619308	0.0897286	UUUUUGC	AK028411|Trp53rk|76367|transformation related protein 53 regulating kinase	NM_023815|Trp53rk|76367|transformation related protein 53 regulating kinase	AK049291|Trp53rk|76367|transformation related protein 53 regulating kinase	AK046261|Trp53rk|76367|transformation related protein 53 regulating kinase	AB028045|Trp53rk|76367|transformation related protein 53 regulating kinase	AK011574|Trp53rk|76367|transformation related protein 53 regulating kinase
mm9_v1_chr7_-_134519509_134519563	0.0865264	UUUUUGC	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chrX_-_57657081_57657155	0.0861707	UUUUUGC	AK143860|Atp11c|320940|ATPase, class VI, type 11C	BC106087|Atp11c|320940|ATPase, class VI, type 11C	AK079479|Atp11c|320940|ATPase, class VI, type 11C	AK043065|Atp11c|320940|ATPase, class VI, type 11C	AK039243|Atp11c|320940|ATPase, class VI, type 11C	NM_001001798|Atp11c|320940|ATPase, class VI, type 11C	NM_001037863|Atp11c|320940|ATPase, class VI, type 11C
mm9_v1_chr19_+_46647844_46647860	0.0843531	UUUUUGC	AK162407|Sfxn2|94279|sideroflexin 2	NM_053196|Sfxn2|94279|sideroflexin 2	AK034875|Sfxn2|94279|sideroflexin 2	BC019808|Sfxn2|94279|sideroflexin 2
mm9_v1_chr17_-_63849928_63849928	0.0836724	UUUUUGC	NM_015794|Fbxl17|50758|F-box and leucine-rich repeat protein 17
mm9_v1_chr19_+_11592938_11593140	0.0823798	UUUUUGC	AF237909|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	NM_027209|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK172345|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	BC027425|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK075671|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK007613|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B
mm9_v1_chr2_+_57090045_57090088	0.0817792	UUUUUGC	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr14_-_20902310_20902393	0.0811549	UUUUUGC	BC027644|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK031748|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK007941|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK015650|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	NM_026209|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene
mm9_v1_chr2_-_18314387_18314456	0.080681	UUUUUGC	AK144228|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	BC080300|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK133582|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK012505|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_001190817|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_007869|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1
mm9_v1_chr16_-_3872273_3872373	0.0803979	UUUUUGC	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr11_-_18918923_18918971	0.0799559	UUUUUGC	AK032947|Meis1|17268|Meis homeobox 1	AK049720|Meis1|17268|Meis homeobox 1	BC023689|Meis1|17268|Meis homeobox 1	AK168684|Meis1|17268|Meis homeobox 1	AK134321|Meis1|17268|Meis homeobox 1	AK140748|Meis1|17268|Meis homeobox 1	NM_001193271|Meis1|17268|Meis homeobox 1	NM_010789|Meis1|17268|Meis homeobox 1
mm9_v1_chr1_-_4350323_4350394	0.079603	UUUUUGC	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr11_-_88579517_88579542	0.0789015	UUUUUGC	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr15_+_59480204_59480213	0.0767085	UUUUUGC	AK033358|Trib1|211770|tribbles homolog 1 (Drosophila)	AK028626|Trib1|211770|tribbles homolog 1 (Drosophila)	AK040738|Trib1|211770|tribbles homolog 1 (Drosophila)	AK041212|Trib1|211770|tribbles homolog 1 (Drosophila)	AK162876|Trib1|211770|tribbles homolog 1 (Drosophila)	NM_144549|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chr5_+_125921888_125921947	0.0738503	UUUUUGC	NM_029752|Bri3bp|76809|Bri3 binding protein
mm9_v1_chr2_+_163820920_163821078	0.0721916	UUUUUGC	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr18_-_7626805_7626890	0.0714634	UUUUUGC	AK033081|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	BC049662|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK012883|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK036956|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK035303|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK050710|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK162694|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK078849|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001081287|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001161620|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK027937|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm9_v1_chr10_-_128002987_128002990	0.0713857	UUUUUGC	AK076286|Pa2g4|18813|proliferation-associated 2G4	BC037623|Pa2g4|18813|proliferation-associated 2G4	AK168582|Pa2g4|18813|proliferation-associated 2G4	NM_011119|Pa2g4|18813|proliferation-associated 2G4
mm9_v1_chr17_-_63230665_63230665	0.0684939	UUUUUGC	BC040218|Efna5|13640|ephrin A5	NM_010109|Efna5|13640|ephrin A5	NM_207654|Efna5|13640|ephrin A5
mm9_v1_chr16_-_96303958_96304070	0.0684675	UUUUUGC	BC095940|Brwd1|93871|bromodomain and WD repeat domain containing 1	BC145265|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292467|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292468|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK030493|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_001103179|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_145125|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_176928|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK051870|Brwd1|93871|bromodomain and WD repeat domain containing 1
mm9_v1_chr11_-_86358252_86358308	0.0609773	UUUUUGC	BC038491|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	BC071244|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK032724|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK085687|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK135716|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK163258|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_001114334|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_028259|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr1_-_78193381_78193710	0.0601977	UUUUUGC	BC048699|Pax3|18505|paired box gene 3	AK157760|Pax3|18505|paired box gene 3	AK012493|Pax3|18505|paired box gene 3	AK014337|Pax3|18505|paired box gene 3	AK044985|Pax3|18505|paired box gene 3	AK144973|Pax3|18505|paired box gene 3	AK147919|Pax3|18505|paired box gene 3	X59358|Pax3|18505|paired box gene 3	AK048723|Pax3|18505|paired box gene 3	AK083424|Pax3|18505|paired box gene 3	AK148354|Pax3|18505|paired box gene 3	AK045018|Pax3|18505|paired box gene 3	NM_001159520|Pax3|18505|paired box gene 3	NM_008781|Pax3|18505|paired box gene 3
mm9_v1_chr2_+_109533719_109533771	0.058352	UUUUUGC	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chrX_-_34404128_34404240	0.0544466	UUUUUGC	BC085302|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	BC051144|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK032304|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK036910|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK084447|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK044209|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK034943|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK141615|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK035825|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK021190|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	NM_029951|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene
mm9_v1_chr9_+_44412931_44412987	0.0533306	UUUUUGC	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chrX_-_148450731_148450837	0.0517965	UUUUUGC	AK017461|Ribc1|66611|RIB43A domain with coiled-coils 1	AK084108|Ribc1|66611|RIB43A domain with coiled-coils 1	BC050755|Ribc1|66611|RIB43A domain with coiled-coils 1	AK011592|Ribc1|66611|RIB43A domain with coiled-coils 1	NM_025660|Ribc1|66611|RIB43A domain with coiled-coils 1
mm9_v1_chr4_+_94405963_94405990	0.0503004	UUUUUGC	BC050824|Tek|21687|endothelial-specific receptor tyrosine kinase	D13738|Tek|21687|endothelial-specific receptor tyrosine kinase	NM_013690|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr1_-_54251877_54252011	0.0452228	UUUUUGC	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr6_-_50406080_50406168	0.042407	UUUUUGC	BC086485|Osbpl3|71720|oxysterol binding protein-like 3	AK160310|Osbpl3|71720|oxysterol binding protein-like 3	NM_001163645|Osbpl3|71720|oxysterol binding protein-like 3
mm9_v1_chr19_+_17030600_17030608	0.0421989	UUUUUGC	AK165582|Prune2|353211|prune homolog 2 (Drosophila)	AK020727|Prune2|353211|prune homolog 2 (Drosophila)	AK039241|Prune2|353211|prune homolog 2 (Drosophila)	AK165913|Prune2|353211|prune homolog 2 (Drosophila)	NM_181348|Prune2|353211|prune homolog 2 (Drosophila)
mm9_v1_chr7_-_38554642_38554770	0.0410961	UUUUUGC	AK122270|Zfp536|243937|zinc finger protein 536	AK030633|Zfp536|243937|zinc finger protein 536	NM_172385|Zfp536|243937|zinc finger protein 536
mm9_v1_chr8_+_129823507_129823551	0.0407844	UUUUUGC	AY856081|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY856082|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001013581|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001013580|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr14_-_25065141_25065143	0.0390412	UUUUUGC	AK147699|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_001163513|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_027726|Dlg5|71228|discs, large homolog 5 (Drosophila)
mm9_v1_chr18_-_35091570_35091661	0.0382779	UUUUUGC	BC013717|Etf1|225363|eukaryotic translation termination factor 1	AK170221|Etf1|225363|eukaryotic translation termination factor 1	AK077559|Etf1|225363|eukaryotic translation termination factor 1	AK049607|Etf1|225363|eukaryotic translation termination factor 1	AK164020|Etf1|225363|eukaryotic translation termination factor 1	AK139933|Etf1|225363|eukaryotic translation termination factor 1	AK166740|Etf1|225363|eukaryotic translation termination factor 1	AK169345|Etf1|225363|eukaryotic translation termination factor 1	NM_144866|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr6_-_97129076_97129149	0.0379627	UUUUUGC	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr13_-_46060325_46060353	0.0374064	UUUUUGC	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr13_-_21622917_21622982	0.0349611	UUUUUGC	BC050152|Zfp192|93681|zinc finger protein 192	AK032718|Zfp192|93681|zinc finger protein 192	AK134299|Zfp192|93681|zinc finger protein 192	NM_139141|Zfp192|93681|zinc finger protein 192
mm9_v1_chr10_+_4424140_4424212	0.0339679	UUUUUGC	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr6_+_48345584_48345680	0.0326503	UUUUUGC	AK040525|Krba1|77827|KRAB-A domain containing 1	NM_133922|Krba1|77827|KRAB-A domain containing 1	AB041543|Krba1|77827|KRAB-A domain containing 1	AK158136|4930447G04Rik|74869|RIKEN cDNA 4930447G04 gene	AK128931|Krba1|77827|KRAB-A domain containing 1	AK173281|Krba1|77827|KRAB-A domain containing 1	BC066816|Krba1|77827|KRAB-A domain containing 1
mm9_v1_chr2_+_19579607_19579745	0.0298497	UUUUUGC	NM_027715|Otud1|71198|OTU domain containing 1
mm9_v1_chr19_-_29122186_29122463	0.0282496	UUUUUGC	AB020203|Ak3|56248|adenylate kinase 3	AK031631|Ak3|56248|adenylate kinase 3	BC024871|Ak3|56248|adenylate kinase 3	NM_021299|Ak3|56248|adenylate kinase 3	BC016432|Ak3|56248|adenylate kinase 3	AK004864|Ak3|56248|adenylate kinase 3	AK008681|Ak3|56248|adenylate kinase 3	BC058191|Ak3|56248|adenylate kinase 3	BC019174|Ak3|56248|adenylate kinase 3	AK007618|Ak3|56248|adenylate kinase 3	AK089027|Ak3|56248|adenylate kinase 3	AK005194|Ak3|56248|adenylate kinase 3	AK149996|Ak3|56248|adenylate kinase 3	AK053644|Ak3|56248|adenylate kinase 3	AK147060|Ak3|56248|adenylate kinase 3
mm9_v1_chr2_+_145611851_145611951	0.0273426	UUUUUGC	NM_028724|Rin2|74030|Ras and Rab interactor 2	BC040390|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr7_-_149276174_149276174	0.0271678	UUUUUGC	NM_008748|Dusp8|18218|dual specificity phosphatase 8	X95518|Dusp8|18218|dual specificity phosphatase 8
mm9_v1_chr14_-_60216634_60216802	0.0265902	UUUUUGC	AK217714|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	BC006901|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK038926|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK032600|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK009280|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK032813|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK045962|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK039148|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	AK042494|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168535|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168536|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168537|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_001168538|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1	NM_027986|Cdadc1|71891|cytidine and dCMP deaminase domain containing 1
mm9_v1_chrX_-_130811415_130811532	0.0262871	UUUUUGC	BC056937|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK129030|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK028999|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK137595|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK049523|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	AK046928|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	NM_001167994|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	NM_001167995|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)	NM_172540|Trmt2b|215201|TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae)
mm9_v1_chr13_+_74487763_74487789	0.0262849	UUUUUGC	AK164539|Ccdc127|67433|coiled-coil domain containing 127	NM_001168658|Ccdc127|67433|coiled-coil domain containing 127	NM_001168659|Ccdc127|67433|coiled-coil domain containing 127	NM_024201|Ccdc127|67433|coiled-coil domain containing 127	AK170932|Ccdc127|67433|coiled-coil domain containing 127	AK002564|Ccdc127|67433|coiled-coil domain containing 127
mm9_v1_chr15_+_10106992_10106998	0.0196206	UUUUUGC	AK054551|Prlr|19116|prolactin receptor	NM_011169|Prlr|19116|prolactin receptor	AK042147|Prlr|19116|prolactin receptor
mm9_v1_chr19_+_34715368_34715406	0.0192981	UUUUUGC	AK151125|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151278|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK150609|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK153532|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151298|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK089608|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK144230|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK150352|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151983|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK153184|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK150424|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151158|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK152112|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK152753|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK157848|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	NM_008331|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK153500|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK131669|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	U43084|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	BC003768|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1
mm9_v1_chr8_-_97362140_97362260	0.0175614	UUUUUGC	AK088757|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	BC021864|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK146282|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK168252|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK076116|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK079615|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK163705|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK136821|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	NM_134141|Ciapin1|109006|cytokine induced apoptosis inhibitor 1
mm9_v1_chr4_-_25208902_25208983	0.0174793	UUUUUGC	AK032663|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC058809|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK129211|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK007993|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK076206|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC132195|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC138153|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK132697|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC080203|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC099529|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	NM_026194|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene
mm9_v1_chr11_-_77421308_77421363	0.0160798	UUUUUGC	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr9_-_14304843_14304925	0.0155808	UUUUUGC	AK155227|Kdm4d|244694|lysine (K)-specific demethylase 4D	AK030020|Kdm4d|244694|lysine (K)-specific demethylase 4D	NM_173433|Kdm4d|244694|lysine (K)-specific demethylase 4D
mm9_v1_chr1_+_107677241_107677394	0.0143317	UUUUUGC	AK138990|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	NM_009399|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	AF019046|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	BC019185|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	AK020374|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a
mm9_v1_chr9_-_123022207_123022342	0.0127186	UUUUUGC	BC052464|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK169197|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC018334|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK018755|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK080541|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK007355|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC005531|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC025126|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK046166|Zdhhc3|69035|zinc finger, DHHC domain containing 3	NM_026917|Zdhhc3|69035|zinc finger, DHHC domain containing 3
mm9_v1_chr15_-_5058532_5058532	0.0120204	UUUUUGC	NM_001163138|Card6|239319|caspase recruitment domain family, member 6
mm9_v1_chr6_-_53018566_53018625	0.0119317	UUUUUGC	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr11_-_120012603_120012679	0.0118751	UUUUUGC	AK159948|Slc38a10|72055|solute carrier family 38, member 10	AK165672|Slc38a10|72055|solute carrier family 38, member 10	BC082300|Slc38a10|72055|solute carrier family 38, member 10	AK090050|Slc38a10|72055|solute carrier family 38, member 10	NM_001164798|Slc38a10|72055|solute carrier family 38, member 10	NM_001164799|Slc38a10|72055|solute carrier family 38, member 10	NM_001164800|Slc38a10|72055|solute carrier family 38, member 10	NM_001164801|Slc38a10|72055|solute carrier family 38, member 10	NM_001164802|Slc38a10|72055|solute carrier family 38, member 10	NM_024249|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr2_+_74513069_74513131	0.0116892	UUUUUGC	BC145656|Hoxd12|15432|homeobox D12	NM_008274|Hoxd12|15432|homeobox D12	AK031206|Hoxd12|15432|homeobox D12
mm9_v1_chr7_-_35015309_35015367	0.00922308	UUUUUGC	AK147124|Gpi1|14751|glucose phosphate isomerase 1	NM_008155|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr11_+_43495499_43495538	0.0091414	UUUUUGC	NM_001164231|Pwwp2a|70802|PWWP domain containing 2A	NM_027557|Pwwp2a|70802|PWWP domain containing 2A	AK173305|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr7_+_146038066_146038078	0.00824628	UUUUUGC	BC066022|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	NM_026391|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr19_+_37281988_37282110	0.0081612	UUUUUGC	AK009364|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164336|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_001164337|March5|69104|membrane-associated ring finger (C3HC4) 5	NM_027314|March5|69104|membrane-associated ring finger (C3HC4) 5	AK009232|March5|69104|membrane-associated ring finger (C3HC4) 5	AK021403|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr11_-_66339627_66339627	0.00730413	UUUUUGC	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr1_+_180117547_180117811	0.00653783	UUUUUGC	AK029574|Pppde1|78825|PPPDE peptidase domain containing 1	NM_024282|Pppde1|78825|PPPDE peptidase domain containing 1	AK020014|Pppde1|78825|PPPDE peptidase domain containing 1	AK049579|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr4_+_17780628_17780643	0.00624964	UUUUUGC	BC057926|Mmp16|17389|matrix metallopeptidase 16	NM_019724|Mmp16|17389|matrix metallopeptidase 16
mm9_v1_chr16_+_5884885_5884885	0.00510365	UUUUUGC	BC053009|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_021477|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr2_-_154900188_154900232	0.00507605	UUUUUGC	AK151097|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK153421|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK154302|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK169331|Ahcy|269378|S-adenosylhomocysteine hydrolase	NM_016661|Ahcy|269378|S-adenosylhomocysteine hydrolase
mm9_v1_chr1_-_60623487_60623632	0.00431833	UUUUUGC	NM_001045513|Raph1|77300|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm9_v1_chr15_+_91958558_91958558	0.00300036	UUUUUGC	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr10_+_53057491_53057558	0.00265938	UUUUUGC	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr4_-_118993081_118993127	0.00210243	UUUUUGC	BC050116|Ppih|66101|peptidyl prolyl isomerase H	BC016565|Ppih|66101|peptidyl prolyl isomerase H	BC098490|Ppih|66101|peptidyl prolyl isomerase H	AK136330|Ppih|66101|peptidyl prolyl isomerase H	AK005202|Ppih|66101|peptidyl prolyl isomerase H	AK014665|Ppih|66101|peptidyl prolyl isomerase H	AK164299|Ppih|66101|peptidyl prolyl isomerase H	AK003179|Ppih|66101|peptidyl prolyl isomerase H	AK008394|Ppih|66101|peptidyl prolyl isomerase H	AK134995|Ppih|66101|peptidyl prolyl isomerase H	NM_001110129|Ppih|66101|peptidyl prolyl isomerase H	NM_001110130|Ppih|66101|peptidyl prolyl isomerase H	NM_028677|Ppih|66101|peptidyl prolyl isomerase H
mm9_v1_chrX_-_54646073_54646213	0.00109392	UUUUUGC	AK207357|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237846|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237847|Rbmx|19655|RNA binding motif protein, X chromosome	AK165006|Rbmx|19655|RNA binding motif protein, X chromosome	BC003710|Rbmx|19655|RNA binding motif protein, X chromosome	AK083899|Rbmx|19655|RNA binding motif protein, X chromosome	AK135164|Rbmx|19655|RNA binding motif protein, X chromosome	NM_001166623|Rbmx|19655|RNA binding motif protein, X chromosome	NM_011252|Rbmx|19655|RNA binding motif protein, X chromosome
mm9_v1_chr7_-_4014717_4014817	0.000489982	UUUUUGC	AF491829|Lair1|52855|leukocyte-associated Ig-like receptor 1	AF491830|Lair1|52855|leukocyte-associated Ig-like receptor 1	AF491831|Lair1|52855|leukocyte-associated Ig-like receptor 1	AF479685|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK043664|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392763|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392764|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392765|Lair1|52855|leukocyte-associated Ig-like receptor 1	AY392766|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK050281|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK054158|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK038574|Lair1|52855|leukocyte-associated Ig-like receptor 1	BC025901|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK044465|Lair1|52855|leukocyte-associated Ig-like receptor 1	AK033472|Lair1|52855|leukocyte-associated Ig-like receptor 1	NM_001113474|Lair1|52855|leukocyte-associated Ig-like receptor 1	NM_178611|Lair1|52855|leukocyte-associated Ig-like receptor 1
