mm9_v1_chr11_+_104092749_104092776	7.71728	CAGCAGG	M18775|Mapt|17762|microtubule-associated protein tau	M18776|Mapt|17762|microtubule-associated protein tau	NM_001038609|Mapt|17762|microtubule-associated protein tau	NM_010838|Mapt|17762|microtubule-associated protein tau	AK078167|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr3_+_105507516_105507594	7.19568	CAGCAGG	NM_175398|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	AK033558|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	BC052371|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene
mm9_v1_chr3_+_126299858_126299959	5.86305	CAGCAGG	AK220516|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_001025438|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_001025439|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_023813|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK032524|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK042722|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK044872|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK142435|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK157736|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK145106|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	BC057103|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta
mm9_v1_chr11_+_49715292_49715377	5.34855	CAGCAGG	AK047088|Rasgef1c|74563|RasGEF domain family, member 1C	NM_029004|Rasgef1c|74563|RasGEF domain family, member 1C	AK018593|Rasgef1c|74563|RasGEF domain family, member 1C
mm9_v1_chr18_-_62071451_62071482	5.26032	CAGCAGG	BC094229|Ablim3|319713|actin binding LIM protein family, member 3	AK082380|Ablim3|319713|actin binding LIM protein family, member 3	BC060275|Ablim3|319713|actin binding LIM protein family, member 3	NM_198649|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr19_+_4711220_4711230	5.20113	CAGCAGG	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr17_-_25707599_25707638	5.07718	CAGCAGG	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr9_-_91260619_91260636	5.0007	CAGCAGG	NM_009573|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr1_+_189821727_189821874	4.82741	CAGCAGG	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr2_+_155601077_155601159	4.53755	CAGCAGG	NM_010808|Mmp24|17391|matrix metallopeptidase 24	AJ010262|Mmp24|17391|matrix metallopeptidase 24	AB021226|Mmp24|17391|matrix metallopeptidase 24
mm9_v1_chr18_-_62071494_62071513	4.37937	CAGCAGG	NM_001164491|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr1_-_133141708_133141776	4.25002	CAGCAGG	AF053959|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK005059|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK155534|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK029321|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	BC089605|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	NM_018750|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5
mm9_v1_chr2_-_25174662_25174740	4.19605	CAGCAGG	AK090286|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177656|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177657|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_008169|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr7_-_86293852_86293959	3.98819	CAGCAGG	AB021130|Mfge8|17304|milk fat globule-EGF factor 8 protein	AB025280|Mfge8|17304|milk fat globule-EGF factor 8 protein	Y11684|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK209209|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC018577|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003904|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003892|Mfge8|17304|milk fat globule-EGF factor 8 protein	M38337|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK089211|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK145183|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK169997|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK170935|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK171143|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK148371|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK087555|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK152088|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK155047|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_001045489|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_008594|Mfge8|17304|milk fat globule-EGF factor 8 protein
mm9_v1_chr9_-_107569654_107569729	3.86803	CAGCAGG	AF159856|Slc38a3|76257|solute carrier family 38, member 3	BC054846|Slc38a3|76257|solute carrier family 38, member 3	NM_023805|Slc38a3|76257|solute carrier family 38, member 3	AK002607|Slc38a3|76257|solute carrier family 38, member 3	BC010678|Slc38a3|76257|solute carrier family 38, member 3
mm9_v1_chr18_-_47528483_47528523	3.84422	CAGCAGG	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chr1_+_89160921_89160953	3.79388	CAGCAGG	AK045911|Efhd1|98363|EF hand domain containing 1	AK171846|Efhd1|98363|EF hand domain containing 1	AK016491|Efhd1|98363|EF hand domain containing 1	NM_028889|Efhd1|98363|EF hand domain containing 1	AK144175|Efhd1|98363|EF hand domain containing 1	BC019531|Efhd1|98363|EF hand domain containing 1	BC085088|Efhd1|98363|EF hand domain containing 1
mm9_v1_chr7_+_116154373_116154494	3.77222	CAGCAGG	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr10_+_90039435_90039495	3.64694	CAGCAGG	AK032211|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177396|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_001177398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	NM_181398|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK163750|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK132228|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B	AK019361|Ipw|16353|imprinted gene in the Prader-Willi syndrome region	AK049899|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr10_+_105907394_105907408	3.63557	CAGCAGG	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr9_+_64233432_64233531	3.63031	CAGCAGG	NM_001134399|Megf11|214058|multiple EGF-like-domains 11	NM_172522|Megf11|214058|multiple EGF-like-domains 11	AK048840|Megf11|214058|multiple EGF-like-domains 11	AK122555|Megf11|214058|multiple EGF-like-domains 11	AK051642|Megf11|214058|multiple EGF-like-domains 11	BC151157|Megf11|214058|multiple EGF-like-domains 11	BC172024|Megf11|214058|multiple EGF-like-domains 11
mm9_v1_chr10_+_126515962_126515962	3.5909	CAGCAGG	AK147446|Agap2|216439|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	NM_001033263|Agap2|216439|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
mm9_v1_chr2_-_31701432_31701524	3.33923	CAGCAGG	AK046338|Fibcd1|98970|fibrinogen C domain containing 1	AK084379|Fibcd1|98970|fibrinogen C domain containing 1	BC060634|Fibcd1|98970|fibrinogen C domain containing 1	NM_178887|Fibcd1|98970|fibrinogen C domain containing 1
mm9_v1_chrX_-_7709907_7709983	3.17399	CAGCAGG	BC080853|Wdr13|73447|WD repeat domain 13	BC057366|Wdr13|73447|WD repeat domain 13	NM_026137|Wdr13|73447|WD repeat domain 13
mm9_v1_chr10_-_80306743_80306828	3.09324	CAGCAGG	BC072620|Lingo3|237403|leucine rich repeat and Ig domain containing 3	NM_001013758|Lingo3|237403|leucine rich repeat and Ig domain containing 3
mm9_v1_chr6_+_38613031_38613110	3.09138	CAGCAGG	NM_001101507|Clec2l|665180|C-type lectin domain family, member L
mm9_v1_chr11_+_100870759_100870810	3.04164	CAGCAGG	NM_016920|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK029316|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AF218249|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK036530|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK158786|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC066839|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC071182|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC001995|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr5_-_139801315_139801476	3.01566	CAGCAGG	NM_172723|Adap1|231821|ArfGAP with dual PH domains 1
mm9_v1_chr14_+_70857227_70857399	2.99791	CAGCAGG	AK049900|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	NM_145981|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC030494|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC139360|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein
mm9_v1_chr11_-_75609557_75609567	2.8771	CAGCAGG	BC067030|Doc2b|13447|double C2, beta	NM_007873|Doc2b|13447|double C2, beta
mm9_v1_chr1_+_137043277_137043554	2.83076	CAGCAGG	BC018479|Arl8a|68724|ADP-ribosylation factor-like 8A	NM_026823|Arl8a|68724|ADP-ribosylation factor-like 8A	AB185207|Arl8a|68724|ADP-ribosylation factor-like 8A
mm9_v1_chr11_-_95936914_95937007	2.78421	CAGCAGG	BC003854|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008191|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK009883|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_001161419|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011432|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008998|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011054|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK167884|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK010868|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_007506|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
mm9_v1_chr6_+_86799460_86799754	2.76864	CAGCAGG	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr14_-_122138082_122138150	2.70536	CAGCAGG	BC158050|Dock9|105445|dedicator of cytokinesis 9	AK122431|Dock9|105445|dedicator of cytokinesis 9	NM_001128307|Dock9|105445|dedicator of cytokinesis 9	NM_001128308|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr14_-_55531726_55531986	2.63593	CAGCAGG	BC062878|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AB012808|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK007059|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	BC005727|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK163116|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	NM_021551|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr18_+_39152776_39152837	2.61839	CAGCAGG	AK011368|Arhgap26|71302|Rho GTPase activating protein 26	NM_175164|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chr6_+_124946723_124946772	2.57898	CAGCAGG	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr2_-_154384574_154384627	2.54917	CAGCAGG	AK044296|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK013520|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK158225|Necab3|56846|N-terminal EF-hand calcium binding protein 3	NM_021546|Necab3|56846|N-terminal EF-hand calcium binding protein 3
mm9_v1_chr7_+_134094045_134094242	2.54165	CAGCAGG	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr10_-_80889856_80889928	2.52858	CAGCAGG	U57635|Nfic|18029|nuclear factor I/C	Y07692|Nfic|18029|nuclear factor I/C	AK087539|Nfic|18029|nuclear factor I/C	AK147496|Nfic|18029|nuclear factor I/C	AK155258|Nfic|18029|nuclear factor I/C	NM_008688|Nfic|18029|nuclear factor I/C	NM_026756|Nfic|18029|nuclear factor I/C
mm9_v1_chr15_+_41278949_41279049	2.51558	CAGCAGG	NM_001130166|Oxr1|170719|oxidation resistance 1	AK158703|Oxr1|170719|oxidation resistance 1
mm9_v1_chr4_-_138648762_138648917	2.47481	CAGCAGG	BC099856|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	BC099857|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	BC099858|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	D50263|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK167311|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK133787|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK146535|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	NM_008675|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1	AK158008|Nbl1|17965|neuroblastoma, suppression of tumorigenicity 1
mm9_v1_chr2_+_156246644_156246847	2.45117	CAGCAGG	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr19_-_46401618_46401645	2.42409	CAGCAGG	BC057353|Psd|73728|pleckstrin and Sec7 domain containing	NM_028627|Psd|73728|pleckstrin and Sec7 domain containing
mm9_v1_chr13_+_54472705_54472742	2.39429	CAGCAGG	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chrX_+_58962671_58962790	2.38864	CAGCAGG	AK137057|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	BC052689|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	NM_001018087|Ldoc1|434784|leucine zipper, down-regulated in cancer 1
mm9_v1_chr9_+_120058842_120058868	2.29638	CAGCAGG	AK013799|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK019323|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK028057|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK083103|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK140055|Mobp|17433|myelin-associated oligodendrocytic basic protein	BC048492|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039364|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039365|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_008614|Mobp|17433|myelin-associated oligodendrocytic basic protein
mm9_v1_chr11_-_33743416_33743626	2.29212	CAGCAGG	AY647242|Kcnip1|70357|Kv channel-interacting protein 1	AY171234|Kcnip1|70357|Kv channel-interacting protein 1	BC034241|Kcnip1|70357|Kv channel-interacting protein 1	DQ148493|Kcnip1|70357|Kv channel-interacting protein 1	AK013657|Kcnip1|70357|Kv channel-interacting protein 1	AK014313|Kcnip1|70357|Kv channel-interacting protein 1	AK046398|Kcnip1|70357|Kv channel-interacting protein 1	AK045948|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190885|Kcnip1|70357|Kv channel-interacting protein 1	NM_027398|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr6_-_13789847_13789902	2.27689	CAGCAGG	BC065154|Gpr85|64450|G protein-coupled receptor 85	NM_145066|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr10_+_122115755_122115904	2.26325	CAGCAGG	AK043121|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_001110218|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_176919|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK040207|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK077422|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK134804|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK051434|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK220260|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr4_+_104829951_104829954	2.20716	CAGCAGG	AK011276|Ppap2b|67916|phosphatidic acid phosphatase type 2B	NM_080555|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr11_+_55017825_55017912	2.20234	CAGCAGG	NM_153139|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	AY211262|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138556|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138558|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1
mm9_v1_chr2_+_121121189_121121220	2.1969	CAGCAGG	NM_001173506|Mtap1a|17754|microtubule-associated protein 1 A	AF182212|Mtap1a|17754|microtubule-associated protein 1 A	BC028853|Mtap1a|17754|microtubule-associated protein 1 A	AK160546|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr18_+_67247984_67247998	2.18221	CAGCAGG	AK045484|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	BC078439|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	NM_177137|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type
mm9_v1_chr1_+_138027943_138028013	2.17973	CAGCAGG	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr6_+_71657791_71657963	2.16127	CAGCAGG	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr11_-_101087738_101087767	2.15383	CAGCAGG	AK045374|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK138942|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	U60453|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK164192|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK140694|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	NM_007970|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr12_+_101437735_101437896	2.13297	CAGCAGG	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr2_+_70312979_70313222	2.13076	CAGCAGG	AK036234|Sp5|64406|trans-acting transcription factor 5	NM_022435|Sp5|64406|trans-acting transcription factor 5	BC116691|Sp5|64406|trans-acting transcription factor 5	BC117505|Sp5|64406|trans-acting transcription factor 5	AF279479|Sp5|64406|trans-acting transcription factor 5
mm9_v1_chr2_+_128891655_128891754	2.11357	CAGCAGG	NM_027192|Ttl|69737|tubulin tyrosine ligase	BC024414|Ttl|69737|tubulin tyrosine ligase	AK084377|Ttl|69737|tubulin tyrosine ligase
mm9_v1_chr4_+_84851330_84851416	2.09766	CAGCAGG	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr9_-_77392505_77392711	2.0206	CAGCAGG	BC087542|Lrrc1|214345|leucine rich repeat containing 1	AK079854|Lrrc1|214345|leucine rich repeat containing 1	BC046591|Lrrc1|214345|leucine rich repeat containing 1	AK051043|Lrrc1|214345|leucine rich repeat containing 1	AK147075|Lrrc1|214345|leucine rich repeat containing 1	NM_001146048|Lrrc1|214345|leucine rich repeat containing 1	AK220166|Lrrc1|214345|leucine rich repeat containing 1
mm9_v1_chr8_+_12915892_12915957	2.01718	CAGCAGG	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr2_-_152841107_152841162	1.99373	CAGCAGG	BC031699|Pdrg1|68559|p53 and DNA damage regulated 1	NM_178939|Pdrg1|68559|p53 and DNA damage regulated 1	AK003410|Pdrg1|68559|p53 and DNA damage regulated 1	AK145939|Pdrg1|68559|p53 and DNA damage regulated 1
mm9_v1_chr2_+_156301543_156301577	1.98943	CAGCAGG	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr2_-_90420626_90420803	1.98226	CAGCAGG	AY038891|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AY039232|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147318|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147556|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	D45212|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	NM_008982|Ptprj|19271|protein tyrosine phosphatase, receptor type, J
mm9_v1_chr9_+_96096690_96096766	1.94655	CAGCAGG	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr15_+_82105322_82105458	1.93351	CAGCAGG	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chrX_-_45388010_45388030	1.91835	CAGCAGG	BC020015|Apln|30878|apelin	DQ832282|Apln|30878|apelin	NM_013912|Apln|30878|apelin	AK042076|Apln|30878|apelin
mm9_v1_chr2_+_121115337_121115465	1.89408	CAGCAGG	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr9_-_58884114_58884258	1.85403	CAGCAGG	Y09535|Neo1|18007|neogenin	BC054540|Neo1|18007|neogenin	AK084609|Neo1|18007|neogenin	NM_001042752|Neo1|18007|neogenin	NM_008684|Neo1|18007|neogenin
mm9_v1_chr11_-_33893151_33893192	1.82146	CAGCAGG	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr10_+_89336253_89336253	1.8111	CAGCAGG	NM_001128086|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr2_+_164313584_164313634	1.76888	CAGCAGG	NM_001048229|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr14_+_63741286_63741338	1.76376	CAGCAGG	AK083393|Ctsb|13030|cathepsin B	NM_007798|Ctsb|13030|cathepsin B	S69034|Ctsb|13030|cathepsin B	BC006656|Ctsb|13030|cathepsin B	AK159992|Ctsb|13030|cathepsin B	AK167361|Ctsb|13030|cathepsin B	AK170959|Ctsb|13030|cathepsin B
mm9_v1_chr9_-_54349409_54349432	1.75712	CAGCAGG	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr6_+_14851348_14851478	1.75652	CAGCAGG	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr8_-_97400173_97400261	1.75143	CAGCAGG	BC004705|Dok4|114255|docking protein 4	AK032352|Dok4|114255|docking protein 4	AK077612|Dok4|114255|docking protein 4	AK156485|Dok4|114255|docking protein 4	NM_053246|Dok4|114255|docking protein 4
mm9_v1_chr2_-_92241357_92241532	1.74699	CAGCAGG	AF003115|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF054611|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	NM_011162|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr12_-_86518229_86518247	1.74012	CAGCAGG	X96793|Pgf|18654|placental growth factor	BC016567|Pgf|18654|placental growth factor	NM_008827|Pgf|18654|placental growth factor	AK042891|Pgf|18654|placental growth factor	AK088943|Pgf|18654|placental growth factor
mm9_v1_chr11_+_70376359_70376411	1.72023	CAGCAGG	NM_001045959|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_001045964|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_016713|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_176893|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB035697|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB041925|Mink1|50932|misshapen-like kinase 1 (zebrafish)
mm9_v1_chr1_+_187278726_187278919	1.71582	CAGCAGG	AK053537|Slc30a10|226781|solute carrier family 30, member 10	NM_001033286|Slc30a10|226781|solute carrier family 30, member 10	BC054548|Slc30a10|226781|solute carrier family 30, member 10	AK136932|Slc30a10|226781|solute carrier family 30, member 10
mm9_v1_chr13_+_55050729_55050861	1.70442	CAGCAGG	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr13_+_74146852_74146948	1.70369	CAGCAGG	NM_182839|Tppp|72948|tubulin polymerization promoting protein	AK141543|Tppp|72948|tubulin polymerization promoting protein	BC054803|Tppp|72948|tubulin polymerization promoting protein
mm9_v1_chr4_+_132567420_132567463	1.70182	CAGCAGG	BC042621|Ahdc1|230793|AT hook, DNA binding motif, containing 1	NM_146155|Ahdc1|230793|AT hook, DNA binding motif, containing 1
mm9_v1_chr19_-_19185685_19185685	1.69718	CAGCAGG	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr2_+_164311755_164311970	1.6816	CAGCAGG	BC030298|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_026797|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr10_-_6980199_6980474	1.66846	CAGCAGG	AK042973|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	NM_133485|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK047607|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK085997|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AF407167|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr14_-_103381744_103381856	1.66457	CAGCAGG	BC116647|Kctd12|239217|potassium channel tetramerisation domain containing 12	BC116648|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK035535|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK172581|Kctd12|239217|potassium channel tetramerisation domain containing 12	NM_177715|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK087895|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr15_-_79635138_79635146	1.6604	CAGCAGG	BC058962|Nptxr|73340|neuronal pentraxin receptor	BC098199|Nptxr|73340|neuronal pentraxin receptor	NM_030689|Nptxr|73340|neuronal pentraxin receptor	AK147605|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr19_+_23833310_23833547	1.65173	CAGCAGG	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr19_+_27291507_27291624	1.60038	CAGCAGG	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr3_+_141128527_141128634	1.58712	CAGCAGG	NM_009472|Unc5c|22253|unc-5 homolog C (C. elegans)	U72634|Unc5c|22253|unc-5 homolog C (C. elegans)	BC115772|Unc5c|22253|unc-5 homolog C (C. elegans)	AK031655|Unc5c|22253|unc-5 homolog C (C. elegans)	AK034558|Unc5c|22253|unc-5 homolog C (C. elegans)	AK035038|Unc5c|22253|unc-5 homolog C (C. elegans)	AK045251|Unc5c|22253|unc-5 homolog C (C. elegans)	AK141181|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142411|Unc5c|22253|unc-5 homolog C (C. elegans)	AK164239|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142974|Unc5c|22253|unc-5 homolog C (C. elegans)
mm9_v1_chr2_-_32702729_32702816	1.57405	CAGCAGG	NM_009295|Stxbp1|20910|syntaxin binding protein 1	NM_001113569|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr17_+_35958628_35958663	1.53356	CAGCAGG	AK051003|Ier3|15937|immediate early response 3	AK170477|Ier3|15937|immediate early response 3	AK003466|Ier3|15937|immediate early response 3	BC006950|Ier3|15937|immediate early response 3	NM_133662|Ier3|15937|immediate early response 3	CT010247|Ier3|15937|immediate early response 3	CT010271|Ier3|15937|immediate early response 3
mm9_v1_chr9_+_51573434_51573478	1.53297	CAGCAGG	AK082060|Arhgap20|244867|Rho GTPase activating protein 20	AK046916|Arhgap20|244867|Rho GTPase activating protein 20	AK040756|Arhgap20|244867|Rho GTPase activating protein 20	NM_175535|Arhgap20|244867|Rho GTPase activating protein 20	AK035563|Arhgap20|244867|Rho GTPase activating protein 20
mm9_v1_chr9_-_83040061_83040223	1.52902	CAGCAGG	AK002970|Hmgn3|94353|high mobility group nucleosomal binding domain 3	BC005693|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK003272|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK153223|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_026122|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_175074|Hmgn3|94353|high mobility group nucleosomal binding domain 3
mm9_v1_chr15_+_74785366_74785667	1.52577	CAGCAGG	NM_001164037|Ly6e|17069|lymphocyte antigen 6 complex, locus E	NM_001164038|Ly6e|17069|lymphocyte antigen 6 complex, locus E	NM_001164039|Ly6e|17069|lymphocyte antigen 6 complex, locus E	NM_001164036|Ly6e|17069|lymphocyte antigen 6 complex, locus E	NM_008529|Ly6e|17069|lymphocyte antigen 6 complex, locus E	NM_001164040|Ly6e|17069|lymphocyte antigen 6 complex, locus E
mm9_v1_chr3_+_95985065_95985205	1.5216	CAGCAGG	AK080525|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK144166|Sv2a|64051|synaptic vesicle glycoprotein 2 a	BC046587|Sv2a|64051|synaptic vesicle glycoprotein 2 a	NM_022030|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK080502|Sv2a|64051|synaptic vesicle glycoprotein 2 a	AK028318|Sv2a|64051|synaptic vesicle glycoprotein 2 a
mm9_v1_chr19_+_43514902_43514932	1.52042	CAGCAGG	NM_031396|Cnnm1|83674|cyclin M1
mm9_v1_chr9_+_58430031_58430196	1.51723	CAGCAGG	NM_009145|Nptn|20320|neuroplastin	BC039191|Nptn|20320|neuroplastin
mm9_v1_chr2_-_91803660_91803893	1.51599	CAGCAGG	NM_138306|Dgkz|104418|diacylglycerol kinase zeta	BC049228|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr1_+_75139300_75139429	1.49498	CAGCAGG	AK034667|Fam134a|227298|family with sequence similarity 134, member A	NM_170755|Fam134a|227298|family with sequence similarity 134, member A	AK172093|Fam134a|227298|family with sequence similarity 134, member A	BC070406|Fam134a|227298|family with sequence similarity 134, member A	AK165957|Fam134a|227298|family with sequence similarity 134, member A	AK160400|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr7_+_133966816_133966816	1.49175	CAGCAGG	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr2_-_7002344_7002370	1.46913	CAGCAGG	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr11_+_105451296_105451348	1.46002	CAGCAGG	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr11_-_101846064_101846112	1.4435	CAGCAGG	AF280809|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK008734|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK170772|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	NM_028207|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	BC016269|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm9_v1_chr15_-_75397601_75397641	1.42516	CAGCAGG	NM_011837|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr16_-_38713106_38713149	1.42268	CAGCAGG	NM_020260|Arhgap31|12549|Rho GTPase activating protein 31
mm9_v1_chr1_+_78306890_78306952	1.41901	CAGCAGG	BC049995|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2	NM_001004173|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2
mm9_v1_chr11_-_118947424_118947559	1.40502	CAGCAGG	BC117801|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC117802|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	U63387|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC045162|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC018304|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	NM_007625|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)
mm9_v1_chr5_-_108978950_108979047	1.4034	CAGCAGG	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr2_+_70956105_70956168	1.40322	CAGCAGG	AK029112|Cybrd1|73649|cytochrome b reductase 1	NM_028593|Cybrd1|73649|cytochrome b reductase 1	AK008849|Cybrd1|73649|cytochrome b reductase 1	AF354666|Cybrd1|73649|cytochrome b reductase 1
mm9_v1_chr17_-_50329593_50329893	1.40251	CAGCAGG	AK087803|Rftn1|76438|raftlin lipid raft linker 1	AK152130|Rftn1|76438|raftlin lipid raft linker 1	AK153288|Rftn1|76438|raftlin lipid raft linker 1	AK172884|Rftn1|76438|raftlin lipid raft linker 1	AK155870|Rftn1|76438|raftlin lipid raft linker 1	AK170913|Rftn1|76438|raftlin lipid raft linker 1	BC052074|Rftn1|76438|raftlin lipid raft linker 1	NM_181397|Rftn1|76438|raftlin lipid raft linker 1
mm9_v1_chr14_-_55400722_55400814	1.38478	CAGCAGG	BC059004|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	NM_016972|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	AK044620|Slc7a8|50934|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm9_v1_chr15_+_32174546_32174624	1.37355	CAGCAGG	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr2_-_102241053_102241195	1.3688	CAGCAGG	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr12_-_14158843_14158897	1.36276	CAGCAGG	BC005488|Fam84a|105005|family with sequence similarity 84, member A	NM_029007|Fam84a|105005|family with sequence similarity 84, member A	AK014625|Fam84a|105005|family with sequence similarity 84, member A
mm9_v1_chr8_+_114060341_114060576	1.35292	CAGCAGG	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr18_-_6516073_6516084	1.35027	CAGCAGG	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr2_+_180332926_180333016	1.34163	CAGCAGG	NM_009936|Col9a3|12841|collagen, type IX, alpha 3	AK030350|Col9a3|12841|collagen, type IX, alpha 3	AF349718|Col9a3|12841|collagen, type IX, alpha 3
mm9_v1_chr8_-_105308910_105309020	1.3281	CAGCAGG	BC046314|Cdh11|12552|cadherin 11	D31963|Cdh11|12552|cadherin 11	AK049652|Cdh11|12552|cadherin 11	AK045023|Cdh11|12552|cadherin 11	NM_009866|Cdh11|12552|cadherin 11
mm9_v1_chr8_-_113917651_113917728	1.30163	CAGCAGG	AY660882|Fa2h|338521|fatty acid 2-hydroxylase	BC046985|Fa2h|338521|fatty acid 2-hydroxylase	BC111912|Fa2h|338521|fatty acid 2-hydroxylase	BC128080|Fa2h|338521|fatty acid 2-hydroxylase	BC128081|Fa2h|338521|fatty acid 2-hydroxylase	AK090338|Fa2h|338521|fatty acid 2-hydroxylase	AK033736|Fa2h|338521|fatty acid 2-hydroxylase	AK161502|Fa2h|338521|fatty acid 2-hydroxylase	NM_178086|Fa2h|338521|fatty acid 2-hydroxylase
mm9_v1_chr18_-_32109233_32109289	1.29189	CAGCAGG	BC070439|Gpr17|574402|G protein-coupled receptor 17	NM_001025381|Gpr17|574402|G protein-coupled receptor 17
mm9_v1_chr13_-_54712629_54712744	1.28625	CAGCAGG	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr13_+_118391126_118391233	1.27873	CAGCAGG	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr9_+_45646611_45646685	1.27062	CAGCAGG	NM_001145947|Bace1|23821|beta-site APP cleaving enzyme 1	NM_011792|Bace1|23821|beta-site APP cleaving enzyme 1	AK033112|Bace1|23821|beta-site APP cleaving enzyme 1	AK041285|Bace1|23821|beta-site APP cleaving enzyme 1	AK080498|Bace1|23821|beta-site APP cleaving enzyme 1	AK082317|Bace1|23821|beta-site APP cleaving enzyme 1	AK163583|Bace1|23821|beta-site APP cleaving enzyme 1	AK046175|Bace1|23821|beta-site APP cleaving enzyme 1	AK082230|Bace1|23821|beta-site APP cleaving enzyme 1	AK049626|Bace1|23821|beta-site APP cleaving enzyme 1	AF190726|Bace1|23821|beta-site APP cleaving enzyme 1	AK014464|Bace1|23821|beta-site APP cleaving enzyme 1	BC048189|Bace1|23821|beta-site APP cleaving enzyme 1
mm9_v1_chr2_+_28388947_28389056	1.2647	CAGCAGG	NM_001145835|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_001145836|Ralgds|19730|ral guanine nucleotide dissociation stimulator	AK159020|Ralgds|19730|ral guanine nucleotide dissociation stimulator	AK159754|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr6_-_85452851_85452987	1.2641	CAGCAGG	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr2_-_113839354_113839354	1.26382	CAGCAGG	BC058595|Gjd2|14617|gap junction protein, delta 2	NM_010290|Gjd2|14617|gap junction protein, delta 2
mm9_v1_chr12_-_103943059_103943209	1.26326	CAGCAGG	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr14_+_34736772_34736788	1.24886	CAGCAGG	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr19_-_4943037_4943091	1.24164	CAGCAGG	AK044418|Peli3|240518|pellino 3	BC028931|Peli3|240518|pellino 3	AK135575|Peli3|240518|pellino 3	NM_172835|Peli3|240518|pellino 3
mm9_v1_chr15_-_79572885_79572998	1.23461	CAGCAGG	BC098208|Sun2|223697|Sad1 and UNC84 domain containing 2	AK171058|Sun2|223697|Sad1 and UNC84 domain containing 2	AK046318|Sun2|223697|Sad1 and UNC84 domain containing 2	AK085196|Sun2|223697|Sad1 and UNC84 domain containing 2	AK128958|Sun2|223697|Sad1 and UNC84 domain containing 2	NM_194342|Sun2|223697|Sad1 and UNC84 domain containing 2	AK156246|Sun2|223697|Sad1 and UNC84 domain containing 2	AK172398|Sun2|223697|Sad1 and UNC84 domain containing 2
mm9_v1_chr1_+_60466462_60466491	1.22566	CAGCAGG	NM_001198570|Abi2|329165|abl-interactor 2	NM_001198571|Abi2|329165|abl-interactor 2	NM_198127|Abi2|329165|abl-interactor 2
mm9_v1_chr8_-_97220127_97220176	1.21554	CAGCAGG	AK018198|Pllp|67801|plasma membrane proteolipid	AK032540|Pllp|67801|plasma membrane proteolipid	BC024534|Pllp|67801|plasma membrane proteolipid	AK002477|Pllp|67801|plasma membrane proteolipid	NM_026385|Pllp|67801|plasma membrane proteolipid
mm9_v1_chr15_-_31460752_31460820	1.21458	CAGCAGG	AK132461|March6|223455|membrane-associated ring finger (C3HC4) 6	AK089827|March6|223455|membrane-associated ring finger (C3HC4) 6	NM_172606|March6|223455|membrane-associated ring finger (C3HC4) 6
mm9_v1_chr3_-_97692613_97692634	1.21237	CAGCAGG	BC028274|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC141185|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC145504|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001039376|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr17_-_24342446_24342565	1.21153	CAGCAGG	AK036088|Tbc1d24|224617|TBC1 domain family, member 24	AK129304|Tbc1d24|224617|TBC1 domain family, member 24	AK084693|Tbc1d24|224617|TBC1 domain family, member 24	AK086293|Tbc1d24|224617|TBC1 domain family, member 24	AK138431|Tbc1d24|224617|TBC1 domain family, member 24	AK045194|Tbc1d24|224617|TBC1 domain family, member 24	AK083833|Tbc1d24|224617|TBC1 domain family, member 24	AK049754|Tbc1d24|224617|TBC1 domain family, member 24	AK147647|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163847|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163848|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163849|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163850|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163851|Tbc1d24|224617|TBC1 domain family, member 24	NM_173186|Tbc1d24|224617|TBC1 domain family, member 24	AK172594|Ntn3|18209|netrin 3
mm9_v1_chr15_-_75397243_75397344	1.20512	CAGCAGG	AF127091|Ly6h|23934|lymphocyte antigen 6 complex, locus H	BC028758|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135688|Ly6h|23934|lymphocyte antigen 6 complex, locus H	AK021002|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr7_+_3289029_3289038	1.20355	CAGCAGG	NM_001093764|Myadm|50918|myeloid-associated differentiation marker
mm9_v1_chr19_-_10956160_10956239	1.1804	CAGCAGG	BC023901|Tmem109|68539|transmembrane protein 109	AK165990|Tmem109|68539|transmembrane protein 109	BC025033|Tmem109|68539|transmembrane protein 109	AK150779|Tmem109|68539|transmembrane protein 109	AK151850|Tmem109|68539|transmembrane protein 109	AK152419|Tmem109|68539|transmembrane protein 109	BC025815|Tmem109|68539|transmembrane protein 109	BC022997|Tmem109|68539|transmembrane protein 109	NM_134142|Tmem109|68539|transmembrane protein 109	AK049148|Tmem109|68539|transmembrane protein 109
mm9_v1_chr2_+_124436031_124436031	1.17505	CAGCAGG	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr15_-_78236262_78236306	1.16832	CAGCAGG	CT010210|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	U35741|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	BC005644|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	NM_009437|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	AK003953|Tst|22117|thiosulfate sulfurtransferase, mitochondrial
mm9_v1_chr2_-_152777135_152777317	1.16739	CAGCAGG	BC116841|Dusp15|252864|dual specificity phosphatase-like 15	BC116843|Dusp15|252864|dual specificity phosphatase-like 15	BC144711|Dusp15|252864|dual specificity phosphatase-like 15	AF357887|Dusp15|252864|dual specificity phosphatase-like 15	NM_145744|Dusp15|252864|dual specificity phosphatase-like 15	NM_001159376|Dusp15|252864|dual specificity phosphatase-like 15
mm9_v1_chr4_+_107474842_107475017	1.167	CAGCAGG	NM_001080926|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	D85463|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	BC127061|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	AJ312058|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm9_v1_chr2_-_131970786_131970867	1.15955	CAGCAGG	AY004874|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	AK087175|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	AK169991|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	NM_018824|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2
mm9_v1_chr2_+_30247921_30247956	1.15776	CAGCAGG	AB030189|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK002544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK044141|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK088065|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	NM_020329|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK053923|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	BC026544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1
mm9_v1_chr3_-_31209216_31209240	1.14713	CAGCAGG	AK173217|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	BC061928|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	AK044448|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	NM_172861|Slc7a14|241919|solute carrier family 7 (cationic amino acid transporter, y+ system), member 14
mm9_v1_chr2_+_158201373_158201515	1.14168	CAGCAGG	NM_175692|Snhg11|319317|small nucleolar RNA host gene 11	AK157790|Snhg11|319317|small nucleolar RNA host gene 11	AK080745|Snhg11|319317|small nucleolar RNA host gene 11	AK133939|Snhg11|319317|small nucleolar RNA host gene 11	AK138473|Snhg11|319317|small nucleolar RNA host gene 11	BC049241|Snhg11|319317|small nucleolar RNA host gene 11	BC030414|Snhg11|319317|small nucleolar RNA host gene 11
mm9_v1_chr5_-_74038829_74039027	1.13877	CAGCAGG	BC052349|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK017781|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK169403|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	NM_011890|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AB024921|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK014381|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK132306|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)
mm9_v1_chr8_+_13159112_13159277	1.12956	CAGCAGG	NM_010684|Lamp1|16783|lysosomal-associated membrane protein 1	BC049097|Lamp1|16783|lysosomal-associated membrane protein 1	AY069968|Lamp1|16783|lysosomal-associated membrane protein 1	AK172007|Lamp1|16783|lysosomal-associated membrane protein 1	AK159096|Lamp1|16783|lysosomal-associated membrane protein 1	AK004637|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr12_-_103057259_103057314	1.12584	CAGCAGG	AK090129|Fbln5|23876|fibulin 5	NM_011812|Fbln5|23876|fibulin 5	AF112151|Fbln5|23876|fibulin 5	AK157936|Fbln5|23876|fibulin 5	AK159960|Fbln5|23876|fibulin 5	AK159471|Fbln5|23876|fibulin 5
mm9_v1_chr16_-_20241392_20241432	1.12195	CAGCAGG	AK079603|Map6d1|208158|MAP6 domain containing 1	BC116220|Map6d1|208158|MAP6 domain containing 1	BC116221|Map6d1|208158|MAP6 domain containing 1	AK163656|Map6d1|208158|MAP6 domain containing 1	NM_198599|Map6d1|208158|MAP6 domain containing 1
mm9_v1_chrX_+_148578716_148578819	1.10774	CAGCAGG	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr10_+_115455342_115455485	1.10406	CAGCAGG	AK051719|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	AK028054|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	NM_011217|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	D31898|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	BC119230|Ptprr|19279|protein tyrosine phosphatase, receptor type, R	BC120547|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr17_-_34164996_34165023	1.09488	CAGCAGG	BC086927|H2-Ke6|14979|H2-K region expressed gene 6	NM_013543|H2-Ke6|14979|H2-K region expressed gene 6
mm9_v1_chr13_-_100286521_100286556	1.09212	CAGCAGG	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr14_-_119498586_119498663	1.09156	CAGCAGG	AK038817|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK052077|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	NM_001081252|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK048685|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2
mm9_v1_chr19_+_29038321_29038434	1.07995	CAGCAGG	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr8_-_63433528_63433596	1.07755	CAGCAGG	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr2_+_32006651_32006708	1.05416	CAGCAGG	AK147271|Prrc2b|227723|proline-rich coiled-coil 2B	AK147677|Prrc2b|227723|proline-rich coiled-coil 2B	NM_001159634|Prrc2b|227723|proline-rich coiled-coil 2B	NM_172661|Prrc2b|227723|proline-rich coiled-coil 2B	BC055116|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr18_+_32322742_32322855	1.04712	CAGCAGG	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr1_+_87791084_87791223	1.0422	CAGCAGG	NM_022417|Itm2c|64294|integral membrane protein 2C	AB030199|Itm2c|64294|integral membrane protein 2C	AK036377|Itm2c|64294|integral membrane protein 2C	AF282981|Itm2c|64294|integral membrane protein 2C	AF272044|Itm2c|64294|integral membrane protein 2C	AK156930|Itm2c|64294|integral membrane protein 2C	BC012952|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr4_-_129118034_129118085	1.0404	CAGCAGG	BC023839|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK140914|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK163930|Zbtb8b|215627|zinc finger and BTB domain containing 8b	NM_153541|Zbtb8b|215627|zinc finger and BTB domain containing 8b
mm9_v1_chr8_-_63462080_63462110	1.03928	CAGCAGG	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr10_-_77927652_77927763	1.02899	CAGCAGG	BC032171|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK145470|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166464|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK080846|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK039194|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166078|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	NM_172134|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	BC027745|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase
mm9_v1_chr9_+_107242932_107243058	1.02622	CAGCAGG	AK043338|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	AK085251|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	AK032501|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	AK032358|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	NM_175486|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	BC115775|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene	BC116708|6430571L13Rik|235599|RIKEN cDNA 6430571L13 gene
mm9_v1_chr4_+_125939622_125939671	1.02539	CAGCAGG	AK151747|Trappc3|27096|trafficking protein particle complex 3	BC003736|Trappc3|27096|trafficking protein particle complex 3	NM_013718|Trappc3|27096|trafficking protein particle complex 3	AF041433|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr8_-_72963464_72963487	1.02479	CAGCAGG	AK129173|Crtc1|382056|CREB regulated transcription coactivator 1	BC080308|Crtc1|382056|CREB regulated transcription coactivator 1	NM_001004062|Crtc1|382056|CREB regulated transcription coactivator 1	BC056137|Crtc1|382056|CREB regulated transcription coactivator 1	BC068139|Crtc1|382056|CREB regulated transcription coactivator 1
mm9_v1_chr9_+_107904919_107905018	1.01777	CAGCAGG	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr6_+_91634056_91634194	1.01542	CAGCAGG	NM_009320|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK041141|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	L03292|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK143510|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK162776|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	BC015245|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm9_v1_chr16_-_46010510_46010548	1.01512	CAGCAGG	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr7_-_107520359_107520405	1.01358	CAGCAGG	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr12_-_80108263_80108327	1.00554	CAGCAGG	BC066067|Tmem229b|268567|transmembrane protein 229B	NM_178745|Tmem229b|268567|transmembrane protein 229B	AK033403|Tmem229b|268567|transmembrane protein 229B	AK053623|Tmem229b|268567|transmembrane protein 229B
mm9_v1_chr18_+_61085283_61085301	0.999199	CAGCAGG	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr9_+_83441886_83441956	0.998219	CAGCAGG	AK032092|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	NM_172507|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK029392|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK076202|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK160357|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2
mm9_v1_chr12_+_109648864_109648871	0.996313	CAGCAGG	BC059839|Eml1|68519|echinoderm microtubule associated protein like 1	NM_001043336|Eml1|68519|echinoderm microtubule associated protein like 1	BC125289|Eml1|68519|echinoderm microtubule associated protein like 1	BC144757|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr8_+_73017009_73017206	0.994242	CAGCAGG	NM_018827|Crlf1|12931|cytokine receptor-like factor 1	AB040038|Crlf1|12931|cytokine receptor-like factor 1	BC107376|Crlf1|12931|cytokine receptor-like factor 1	BC107377|Crlf1|12931|cytokine receptor-like factor 1	BC114407|Crlf1|12931|cytokine receptor-like factor 1
mm9_v1_chrX_-_130223380_130223542	0.988187	CAGCAGG	AK046726|Pcdh19|279653|protocadherin 19	NM_001105245|Pcdh19|279653|protocadherin 19	NM_001105246|Pcdh19|279653|protocadherin 19
mm9_v1_chr11_-_74403603_74403659	0.987077	CAGCAGG	NM_001015046|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr17_-_46624611_46624627	0.980695	CAGCAGG	NM_001162864|Ttbk1|106763|tau tubulin kinase 1
mm9_v1_chr9_+_108710676_108710814	0.978883	CAGCAGG	BC064818|Nckipsd|80987|NCK interacting protein with SH3 domain	NM_030729|Nckipsd|80987|NCK interacting protein with SH3 domain	AK134725|Nckipsd|80987|NCK interacting protein with SH3 domain	AF130313|Nckipsd|80987|NCK interacting protein with SH3 domain
mm9_v1_chr9_+_43851466_43851476	0.971787	CAGCAGG	NM_009382|Thy1|21838|thymus cell antigen 1, theta
mm9_v1_chr2_-_35056582_35056639	0.97003	CAGCAGG	AK160859|Rab14|68365|RAB14, member RAS oncogene family	NM_026697|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr17_+_87153083_87153241	0.965319	CAGCAGG	AK136911|Epas1|13819|endothelial PAS domain protein 1	NM_010137|Epas1|13819|endothelial PAS domain protein 1	D89787|Epas1|13819|endothelial PAS domain protein 1
mm9_v1_chr18_+_86564229_86564343	0.96403	CAGCAGG	AK081325|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1	NM_144946|Neto1|246317|neuropilin (NRP) and tolloid (TLL)-like 1
mm9_v1_chr2_+_181099632_181099635	0.956305	CAGCAGG	AK041491|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_144894|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chr11_+_98698077_98698100	0.948396	CAGCAGG	NM_001080925|Rapgefl1|268480|Rap guanine nucleotide exchange factor (GEF)-like 1
mm9_v1_chr11_-_119089774_119089812	0.943651	CAGCAGG	BC057634|Tbc1d16|207592|TBC1 domain family, member 16	AK047555|Tbc1d16|207592|TBC1 domain family, member 16	NM_172443|Tbc1d16|207592|TBC1 domain family, member 16
mm9_v1_chr7_+_142729505_142729604	0.933384	CAGCAGG	AK004602|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	NM_011212|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U35368|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	BC024631|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK132455|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U62387|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr8_+_87514471_87514552	0.925495	CAGCAGG	NM_001167991|Hook2|170833|hook homolog 2 (Drosophila)	NM_133255|Hook2|170833|hook homolog 2 (Drosophila)	AK030599|Hook2|170833|hook homolog 2 (Drosophila)	AK136069|Hook2|170833|hook homolog 2 (Drosophila)	AK042048|Hook2|170833|hook homolog 2 (Drosophila)	AK166954|Hook2|170833|hook homolog 2 (Drosophila)	BC080744|Hook2|170833|hook homolog 2 (Drosophila)	BC019486|Hook2|170833|hook homolog 2 (Drosophila)	AK145768|Hook2|170833|hook homolog 2 (Drosophila)	AK169073|Hook2|170833|hook homolog 2 (Drosophila)	AK161612|Hook2|170833|hook homolog 2 (Drosophila)	BC055881|Hook2|170833|hook homolog 2 (Drosophila)	BC029967|Hook2|170833|hook homolog 2 (Drosophila)
mm9_v1_chr11_-_87800799_87801034	0.907421	CAGCAGG	AK028319|Dynll2|68097|dynein light chain LC8-type 2	BC011289|Dynll2|68097|dynein light chain LC8-type 2	BC058797|Dynll2|68097|dynein light chain LC8-type 2	BC040822|Dynll2|68097|dynein light chain LC8-type 2	AK011284|Dynll2|68097|dynein light chain LC8-type 2	AK160114|Dynll2|68097|dynein light chain LC8-type 2	AK049645|Dynll2|68097|dynein light chain LC8-type 2	AK078434|Dynll2|68097|dynein light chain LC8-type 2	AK169212|Dynll2|68097|dynein light chain LC8-type 2	NM_026556|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr11_-_95926589_95926740	0.901548	CAGCAGG	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr7_-_72301384_72301483	0.900729	CAGCAGG	NM_183087|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr7_-_148615247_148615354	0.893404	CAGCAGG	AF243130|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK005092|Cend1|57754|cell cycle exit and neuronal differentiation 1	BC023032|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK079045|Cend1|57754|cell cycle exit and neuronal differentiation 1	NM_021316|Cend1|57754|cell cycle exit and neuronal differentiation 1
mm9_v1_chr4_+_128331945_128331981	0.89215	CAGCAGG	NM_001195130|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr10_-_61693963_61693977	0.891814	CAGCAGG	AK012471|Tspan15|70423|tetraspanin 15	NM_197996|Tspan15|70423|tetraspanin 15	AK172169|Tspan15|70423|tetraspanin 15
mm9_v1_chr7_-_91234908_91235022	0.880079	CAGCAGG	BC116643|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	BC115873|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AB103331|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK036809|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK162689|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	NM_030728|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene
mm9_v1_chr9_+_58100961_58101075	0.877485	CAGCAGG	NM_026942|Stoml1|69106|stomatin-like 1	AK045820|Stoml1|69106|stomatin-like 1	BC017536|Stoml1|69106|stomatin-like 1	BC037074|Stoml1|69106|stomatin-like 1	AK148324|Stoml1|69106|stomatin-like 1
mm9_v1_chr2_-_6805937_6806041	0.875944	CAGCAGG	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr6_+_108610606_108610702	0.869194	CAGCAGG	AK048242|Bhlhe40|20893|basic helix-loop-helix family, member e40	NM_011498|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK154935|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK090032|Bhlhe40|20893|basic helix-loop-helix family, member e40	BC010720|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF010305|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF364051|Bhlhe40|20893|basic helix-loop-helix family, member e40
mm9_v1_chr3_-_9610062_9610137	0.866877	CAGCAGG	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr7_-_148725673_148725757	0.86251	CAGCAGG	AK036717|Chid1|68038|chitinase domain containing 1	AK014071|Chid1|68038|chitinase domain containing 1	AK050655|Chid1|68038|chitinase domain containing 1	BC006876|Chid1|68038|chitinase domain containing 1	AK160156|Chid1|68038|chitinase domain containing 1	AK160200|Chid1|68038|chitinase domain containing 1	BC061063|Chid1|68038|chitinase domain containing 1	AK147377|Chid1|68038|chitinase domain containing 1	AK014141|Chid1|68038|chitinase domain containing 1	AK040002|Chid1|68038|chitinase domain containing 1	NM_001142681|Chid1|68038|chitinase domain containing 1	NM_026522|Chid1|68038|chitinase domain containing 1
mm9_v1_chr19_-_50752974_50753135	0.860267	CAGCAGG	AF137367|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF195056|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF284755|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	NM_021377|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AK030440|Sorcs1|58178|VPS10 domain receptor protein SORCS 1
mm9_v1_chr7_-_148620437_148620500	0.858691	CAGCAGG	AK162400|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	BC037949|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK155276|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_001177576|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr6_+_88674398_88674540	0.855203	CAGCAGG	NM_001166249|Mgll|23945|monoglyceride lipase	NM_011844|Mgll|23945|monoglyceride lipase	AK131645|Mgll|23945|monoglyceride lipase	AK028008|Mgll|23945|monoglyceride lipase	AK148242|Mgll|23945|monoglyceride lipase	AK148395|Mgll|23945|monoglyceride lipase	AJ001118|Mgll|23945|monoglyceride lipase	BC057965|Mgll|23945|monoglyceride lipase	AK215869|Mgll|23945|monoglyceride lipase	AK185666|Mgll|23945|monoglyceride lipase	AK188627|Mgll|23945|monoglyceride lipase	AK206822|Mgll|23945|monoglyceride lipase	AK208240|Mgll|23945|monoglyceride lipase	AK211363|Mgll|23945|monoglyceride lipase
mm9_v1_chr2_+_38863553_38863815	0.854825	CAGCAGG	BC024482|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK008255|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	NM_028809|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK181564|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like
mm9_v1_chr1_+_37356722_37356738	0.854717	CAGCAGG	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr5_-_118694869_118695124	0.844307	CAGCAGG	AK046850|Rnft2|269695|ring finger protein, transmembrane 2	NM_172998|Rnft2|269695|ring finger protein, transmembrane 2	BC057302|Rnft2|269695|ring finger protein, transmembrane 2	AK148930|Rnft2|269695|ring finger protein, transmembrane 2	NM_001109902|Rnft2|269695|ring finger protein, transmembrane 2	AK090256|Rnft2|269695|ring finger protein, transmembrane 2
mm9_v1_chr6_+_30351902_30351953	0.839518	CAGCAGG	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr10_+_57351786_57351901	0.833958	CAGCAGG	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr1_+_174271338_174271373	0.829404	CAGCAGG	AK048864|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	NM_001039484|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr2_+_181449669_181449860	0.825075	CAGCAGG	AF043276|Oprl1|18389|opioid receptor-like 1	U09421|Oprl1|18389|opioid receptor-like 1	AK031926|Oprl1|18389|opioid receptor-like 1	AK079529|Oprl1|18389|opioid receptor-like 1	NM_011012|Oprl1|18389|opioid receptor-like 1	AK043275|Oprl1|18389|opioid receptor-like 1	AK044178|Oprl1|18389|opioid receptor-like 1	X91813|Oprl1|18389|opioid receptor-like 1	AK142474|Oprl1|18389|opioid receptor-like 1	BC050885|Oprl1|18389|opioid receptor-like 1	U04952|Oprl1|18389|opioid receptor-like 1	BC051982|Oprl1|18389|opioid receptor-like 1
mm9_v1_chr19_-_10315199_10315247	0.824874	CAGCAGG	BC157942|Gm98|225908|predicted gene 98	AK031485|Gm98|225908|predicted gene 98	AK141695|Gm98|225908|predicted gene 98	NM_001033481|Gm98|225908|predicted gene 98
mm9_v1_chr11_-_75268137_75268225	0.815545	CAGCAGG	NM_138950|Wdr81|192652|WD repeat domain 81
mm9_v1_chr9_-_21116749_21116776	0.814876	CAGCAGG	AF067146|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK010478|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK082674|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	NM_001110300|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	NM_009678|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit
mm9_v1_chr2_+_32462471_32462603	0.814533	CAGCAGG	NM_001025310|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	NM_016973|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK157562|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK159158|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC036985|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AB035123|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC022924|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm9_v1_chr13_+_111185251_111185286	0.81195	CAGCAGG	NM_152804|Plk2|20620|polo-like kinase 2 (Drosophila)	AK133962|Plk2|20620|polo-like kinase 2 (Drosophila)	AK143452|Plk2|20620|polo-like kinase 2 (Drosophila)	AK164365|Plk2|20620|polo-like kinase 2 (Drosophila)	BC034513|Plk2|20620|polo-like kinase 2 (Drosophila)	BC035451|Plk2|20620|polo-like kinase 2 (Drosophila)	M96163|Plk2|20620|polo-like kinase 2 (Drosophila)
mm9_v1_chr19_+_10463540_10463619	0.810208	CAGCAGG	NM_018801|Syt7|54525|synaptotagmin VII	NM_173067|Syt7|54525|synaptotagmin VII	NM_173068|Syt7|54525|synaptotagmin VII	AK080850|Syt7|54525|synaptotagmin VII
mm9_v1_chr9_-_45714959_45715007	0.805652	CAGCAGG	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr2_-_92274110_92274239	0.804144	CAGCAGG	AB003433|Cry2|12953|cryptochrome 2 (photolyase-like)	AK172994|Cry2|12953|cryptochrome 2 (photolyase-like)	BC054794|Cry2|12953|cryptochrome 2 (photolyase-like)	BC066799|Cry2|12953|cryptochrome 2 (photolyase-like)	AK037778|Cry2|12953|cryptochrome 2 (photolyase-like)	AK041696|Cry2|12953|cryptochrome 2 (photolyase-like)	AF156987|Cry2|12953|cryptochrome 2 (photolyase-like)	AK133781|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_001113333|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_009963|Cry2|12953|cryptochrome 2 (photolyase-like)	AK051524|Cry2|12953|cryptochrome 2 (photolyase-like)
mm9_v1_chr15_-_75397030_75397077	0.802851	CAGCAGG	AK034884|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135689|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr16_-_22439642_22439745	0.796789	CAGCAGG	BC034680|Etv5|104156|ets variant gene 5	NM_023794|Etv5|104156|ets variant gene 5	AK031452|Etv5|104156|ets variant gene 5	AK168881|Etv5|104156|ets variant gene 5	AK049234|Etv5|104156|ets variant gene 5	AK164091|Etv5|104156|ets variant gene 5	AK018368|Etv5|104156|ets variant gene 5
mm9_v1_chr17_-_24787217_24787278	0.795284	CAGCAGG	AB026489|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	BC070458|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK169007|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK170057|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK039491|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK004710|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075800|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075813|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK084801|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023055|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr6_+_88674697_88674748	0.791635	CAGCAGG	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr1_+_63492447_63492511	0.789552	CAGCAGG	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr6_-_124414668_124414803	0.77668	CAGCAGG	AJ278486|Clstn3|232370|calsyntenin 3	BC055054|Clstn3|232370|calsyntenin 3	AK032336|Clstn3|232370|calsyntenin 3	NM_153508|Clstn3|232370|calsyntenin 3
mm9_v1_chr5_-_92739036_92739049	0.775361	CAGCAGG	AK029881|Sdad1|231452|SDA1 domain containing 1	NM_172713|Sdad1|231452|SDA1 domain containing 1
mm9_v1_chr5_+_9266137_9266216	0.772434	CAGCAGG	AK079644|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK165601|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK081041|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK034358|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK045969|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK048738|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK133610|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	NM_172706|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC132290|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC138012|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene
mm9_v1_chr19_-_4283126_4283138	0.772051	CAGCAGG	AK089186|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	AK155698|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	NM_026720|Ankrd13d|68423|ankyrin repeat domain 13 family, member D
mm9_v1_chr4_-_148681792_148681843	0.749344	CAGCAGG	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
mm9_v1_chr7_+_86418127_86418181	0.74704	CAGCAGG	AK008690|Abhd2|54608|abhydrolase domain containing 2	AK053460|Abhd2|54608|abhydrolase domain containing 2	AK139526|Abhd2|54608|abhydrolase domain containing 2	NM_018811|Abhd2|54608|abhydrolase domain containing 2	AF546701|Abhd2|54608|abhydrolase domain containing 2	BC089477|Abhd2|54608|abhydrolase domain containing 2	AF201730|Abhd2|54608|abhydrolase domain containing 2	BC027098|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr3_+_105508375_105508375	0.743936	CAGCAGG	AK078368|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	NM_001163356|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene
mm9_v1_chr1_-_172519932_172519981	0.741398	CAGCAGG	AK045124|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK018149|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK053892|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	NM_001109985|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein
mm9_v1_chr2_+_119500777_119500991	0.738975	CAGCAGG	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr7_+_26091105_26091184	0.731946	CAGCAGG	AK081054|Tmem145|330485|transmembrane protein 145	NM_183311|Tmem145|330485|transmembrane protein 145
mm9_v1_chr11_-_80593259_80593526	0.731341	CAGCAGG	AK188302|Myo1d|338367|myosin ID	AK203977|Myo1d|338367|myosin ID	BC150765|Myo1d|338367|myosin ID	AK037051|Myo1d|338367|myosin ID	AK049374|Myo1d|338367|myosin ID	NM_177390|Myo1d|338367|myosin ID
mm9_v1_chr8_-_74195650_74195661	0.730345	CAGCAGG	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chrX_+_143397055_143397188	0.728832	CAGCAGG	AK034512|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK043320|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK079648|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK139392|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	NM_008312|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK086348|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	BC098327|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	M63685|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	X72230|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C
mm9_v1_chr13_+_19040215_19040285	0.727977	CAGCAGG	AK132168|Amph|218038|amphiphysin	BC054718|Amph|218038|amphiphysin	NM_175007|Amph|218038|amphiphysin	AK047144|Amph|218038|amphiphysin
mm9_v1_chr2_-_77008655_77008700	0.726245	CAGCAGG	AK045498|Ccdc141|545428|coiled-coil domain containing 141	AK011952|Ccdc141|545428|coiled-coil domain containing 141	AK053175|Ccdc141|545428|coiled-coil domain containing 141	NM_001025576|Ccdc141|545428|coiled-coil domain containing 141	AK041121|Ccdc141|545428|coiled-coil domain containing 141
mm9_v1_chr16_+_18836666_18836685	0.721942	CAGCAGG	AK160192|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	NM_001033164|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	AK010889|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	AK153794|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene
mm9_v1_chrX_-_71126088_71126172	0.720692	CAGCAGG	BC056988|L1cam|16728|L1 cell adhesion molecule	AK139407|L1cam|16728|L1 cell adhesion molecule	NM_008478|L1cam|16728|L1 cell adhesion molecule
mm9_v1_chr3_+_94114044_94114121	0.719573	CAGCAGG	AK139993|Them4|75778|thioesterase superfamily member 4	AK138397|Them4|75778|thioesterase superfamily member 4	NM_029431|Them4|75778|thioesterase superfamily member 4	BC134396|Them4|75778|thioesterase superfamily member 4	AK014834|Them4|75778|thioesterase superfamily member 4
mm9_v1_chr3_-_97628441_97628543	0.705441	CAGCAGG	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr1_-_94998418_94998474	0.704516	CAGCAGG	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr14_+_55502261_55502285	0.701472	CAGCAGG	AF030769|Bcl2l2|12050|BCL2-like 2	NM_007537|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr9_+_37335673_37335728	0.700497	CAGCAGG	NM_027102|Esam|69524|endothelial cell-specific adhesion molecule	AK156399|Esam|69524|endothelial cell-specific adhesion molecule	BC019460|Esam|69524|endothelial cell-specific adhesion molecule	BC049249|Esam|69524|endothelial cell-specific adhesion molecule	AK009223|Esam|69524|endothelial cell-specific adhesion molecule	AF361882|Esam|69524|endothelial cell-specific adhesion molecule
mm9_v1_chr5_-_74464390_74464465	0.689546	CAGCAGG	BC039916|Usp46|69727|ubiquitin specific peptidase 46	NM_177561|Usp46|69727|ubiquitin specific peptidase 46	AK145298|Usp46|69727|ubiquitin specific peptidase 46
mm9_v1_chr11_-_118216689_118216724	0.684331	CAGCAGG	NM_011594|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr4_-_53172748_53172872	0.681639	CAGCAGG	AK051920|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1	NM_013454|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr8_-_129117310_129117573	0.6782	CAGCAGG	NM_001164598|Irf2bp2|270110|interferon regulatory factor 2 binding protein 2
mm9_v1_chr10_+_59165307_59165416	0.676567	CAGCAGG	AK083520|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK049521|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK050113|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK046049|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC026566|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK077605|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK029884|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK052485|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC018320|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC023022|Cbara1|216001|calcium binding atopy-related autoantigen 1	NM_144822|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK085553|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK051470|Cbara1|216001|calcium binding atopy-related autoantigen 1
mm9_v1_chr8_-_13677450_13677625	0.6671	CAGCAGG	BC068297|Rasa3|19414|RAS p21 protein activator 3	AK147896|Rasa3|19414|RAS p21 protein activator 3	U20238|Rasa3|19414|RAS p21 protein activator 3	BC057300|Rasa3|19414|RAS p21 protein activator 3	AK053353|Rasa3|19414|RAS p21 protein activator 3	AK166354|Rasa3|19414|RAS p21 protein activator 3	NM_009025|Rasa3|19414|RAS p21 protein activator 3	AK141511|Rasa3|19414|RAS p21 protein activator 3	BC060195|Rasa3|19414|RAS p21 protein activator 3
mm9_v1_chr10_+_20672352_20672469	0.661204	CAGCAGG	AK080373|Ahi1|52906|Abelson helper integration site 1	NM_026203|Ahi1|52906|Abelson helper integration site 1	AK005991|Ahi1|52906|Abelson helper integration site 1	AK013997|Ahi1|52906|Abelson helper integration site 1	AK019416|Ahi1|52906|Abelson helper integration site 1	BC106130|Ahi1|52906|Abelson helper integration site 1	BC065146|Ahi1|52906|Abelson helper integration site 1	AK036336|Ahi1|52906|Abelson helper integration site 1	AY133241|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr11_+_70658261_70658270	0.658829	CAGCAGG	AK134587|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	NM_019400|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr7_-_147340532_147340650	0.658785	CAGCAGG	BC056484|Sprn|212518|shadow of prion protein	NM_183147|Sprn|212518|shadow of prion protein	AK049995|Sprn|212518|shadow of prion protein
mm9_v1_chr7_-_148623725_148623772	0.658593	CAGCAGG	BC050887|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_026646|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr2_-_127347102_127347108	0.655149	CAGCAGG	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr4_+_34011567_34011625	0.653291	CAGCAGG	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chr19_-_42506122_42506286	0.652233	CAGCAGG	AJ421516|Crtac1|72832|cartilage acidic protein 1	AK032328|Crtac1|72832|cartilage acidic protein 1	AK049801|Crtac1|72832|cartilage acidic protein 1	AK149069|Crtac1|72832|cartilage acidic protein 1	NM_145123|Crtac1|72832|cartilage acidic protein 1	AK083221|Crtac1|72832|cartilage acidic protein 1	AK149020|Crtac1|72832|cartilage acidic protein 1
mm9_v1_chr14_+_69955194_69955282	0.647963	CAGCAGG	NM_026174|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK045342|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK004761|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK042053|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC052090|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC043134|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4
mm9_v1_chr5_-_122952228_122952237	0.645739	CAGCAGG	NM_001110140|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	NM_009722|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr11_+_78002249_78002305	0.638517	CAGCAGG	NM_033475|Rab34|19376|RAB34, member of RAS oncogene family	BC028481|Rab34|19376|RAB34, member of RAS oncogene family	AK160308|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr7_+_127821093_127821157	0.637943	CAGCAGG	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chr1_+_89652645_89652774	0.627035	CAGCAGG	AK030983|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	NM_029846|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK145673|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK155358|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK163246|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK170073|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	BC049122|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK048873|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK005181|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087879|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087880|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087881|Atg16l1|77040|autophagy-related 16-like 1 (yeast)
mm9_v1_chr4_+_117222924_117223239	0.625391	CAGCAGG	AK144107|Eri3|140546|exoribonuclease 3	BC096545|Eri3|140546|exoribonuclease 3	AK083017|Eri3|140546|exoribonuclease 3	NM_080469|Eri3|140546|exoribonuclease 3	BC116685|Eri3|140546|exoribonuclease 3	BC117540|Eri3|140546|exoribonuclease 3
mm9_v1_chr18_+_37170365_37170627	0.623277	CAGCAGG	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr2_+_180701920_180701946	0.621047	CAGCAGG	NM_001177707|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177708|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177709|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177710|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_145760|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK145879|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1
mm9_v1_chr18_+_37098858_37098971	0.620785	CAGCAGG	BC030897|Pcdha2|353234|protocadherin alpha 2	NM_198117|Pcdha2|353234|protocadherin alpha 2	BC141390|Pcdha2|353234|protocadherin alpha 2	AY013760|Pcdha2|353234|protocadherin alpha 2
mm9_v1_chr18_+_37133455_37133703	0.618159	CAGCAGG	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr2_-_130468507_130468540	0.612415	CAGCAGG	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr5_+_145306751_145306864	0.611898	CAGCAGG	AK134806|Nptx2|53324|neuronal pentraxin 2	NM_016789|Nptx2|53324|neuronal pentraxin 2	BC026054|Nptx2|53324|neuronal pentraxin 2	AF049124|Nptx2|53324|neuronal pentraxin 2
mm9_v1_chr7_+_150238626_150238701	0.611441	CAGCAGG	NM_133655|Cd81|12520|CD81 antigen	AK166521|Cd81|12520|CD81 antigen	AK170741|Cd81|12520|CD81 antigen	AK136370|Cd81|12520|CD81 antigen	BC011433|Cd81|12520|CD81 antigen
mm9_v1_chr18_-_38760921_38761068	0.605389	CAGCAGG	BC050944|Spry4|24066|sprouty homolog 4 (Drosophila)	BC057005|Spry4|24066|sprouty homolog 4 (Drosophila)	NM_011898|Spry4|24066|sprouty homolog 4 (Drosophila)	AK139816|Spry4|24066|sprouty homolog 4 (Drosophila)	AB019280|Spry4|24066|sprouty homolog 4 (Drosophila)	AK037180|Spry4|24066|sprouty homolog 4 (Drosophila)	AK048122|Spry4|24066|sprouty homolog 4 (Drosophila)	AF176906|Spry4|24066|sprouty homolog 4 (Drosophila)
mm9_v1_chr7_+_98239230_98239295	0.601044	CAGCAGG	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr2_+_130275977_130276080	0.599336	CAGCAGG	AK010458|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_001163688|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_008980|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK031690|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK165673|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC050930|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC110683|Ptpra|19262|protein tyrosine phosphatase, receptor type, A
mm9_v1_chr17_-_30024821_30024837	0.596075	CAGCAGG	NM_001081160|Mdga1|74762|MAM domain containing glycosylphosphatidylinositol anchor 1
mm9_v1_chr19_-_5118229_5118407	0.595851	CAGCAGG	AF055666|Klc2|16594|kinesin light chain 2	BC014845|Klc2|16594|kinesin light chain 2	AK141439|Klc2|16594|kinesin light chain 2	NM_008451|Klc2|16594|kinesin light chain 2
mm9_v1_chr8_+_124114323_124114400	0.594047	CAGCAGG	AF255953|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK132329|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC068180|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK002795|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003558|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK012604|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003106|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003205|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	NM_026160|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK151614|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC028812|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC110308|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC086774|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta
mm9_v1_chr4_+_155265932_155266005	0.592723	CAGCAGG	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr13_+_67033746_67033766	0.591864	CAGCAGG	AK085857|Ptdss1|19210|phosphatidylserine synthase 1	NM_008959|Ptdss1|19210|phosphatidylserine synthase 1
mm9_v1_chr10_+_127896244_127896376	0.591602	CAGCAGG	NM_001114096|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	NM_001114097|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	NM_198160|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	BC058720|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK089461|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK170530|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK146971|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	BC040363|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm9_v1_chr5_+_144861227_144861325	0.590496	CAGCAGG	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr2_+_109731003_109731053	0.585188	CAGCAGG	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr9_-_86589782_86589994	0.58386	CAGCAGG	M26756|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC094028|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC080660|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC003287|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	AK004980|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	AK077968|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	J02652|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC011081|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	NM_008615|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic
mm9_v1_chr12_+_81891479_81891592	0.577244	CAGCAGG	AK030233|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK161132|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK143867|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	BC040401|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	NM_178682|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK151939|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK152820|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK164823|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr3_+_95697820_95698061	0.575421	CAGCAGG	AK148400|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC057865|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	AK152334|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC012406|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	NM_146104|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC024111|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	NM_146134|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)
mm9_v1_chr19_+_10116001_10116070	0.564643	CAGCAGG	NM_021890|Fads3|60527|fatty acid desaturase 3	AK090042|Fads3|60527|fatty acid desaturase 3	AK172509|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr7_-_118923483_118923501	0.560276	CAGCAGG	BC024988|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	NM_173739|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	AK084671|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4
mm9_v1_chr9_-_110379093_110379197	0.558029	CAGCAGG	BC065167|Klhl18|270201|kelch-like 18 (Drosophila)	BC025563|Klhl18|270201|kelch-like 18 (Drosophila)	AK173029|Klhl18|270201|kelch-like 18 (Drosophila)	NM_177771|Klhl18|270201|kelch-like 18 (Drosophila)
mm9_v1_chr4_+_155221507_155221779	0.554789	CAGCAGG	NM_010091|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)	AK155349|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)	BC138848|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)	BC138849|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)	AK220168|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)	U10115|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)	BC088987|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)	BC051991|Dvl1|13542|dishevelled, dsh homolog 1 (Drosophila)
mm9_v1_chr18_+_37127284_37127409	0.551152	CAGCAGG	D86917|Pcdha6|12937|protocadherin alpha 6	BC150815|Pcdha6|12937|protocadherin alpha 6	BC150816|Pcdha6|12937|protocadherin alpha 6	BC054813|Pcdha6|12937|protocadherin alpha 6	AY013764|Pcdha6|12937|protocadherin alpha 6	NM_007767|Pcdha6|12937|protocadherin alpha 6
mm9_v1_chr14_-_76956445_76956583	0.547672	CAGCAGG	AY425619|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	NM_001160326|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	AK012850|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr6_+_53523365_53523387	0.543196	CAGCAGG	AK052230|Creb5|231991|cAMP responsive element binding protein 5	AK052451|Creb5|231991|cAMP responsive element binding protein 5	AK154148|Creb5|231991|cAMP responsive element binding protein 5	NM_172728|Creb5|231991|cAMP responsive element binding protein 5	AK170128|Creb5|231991|cAMP responsive element binding protein 5	AK155537|Creb5|231991|cAMP responsive element binding protein 5	BC098487|Creb5|231991|cAMP responsive element binding protein 5
mm9_v1_chr3_-_94819118_94819164	0.537548	CAGCAGG	AK133173|Zfp687|78266|zinc finger protein 687	AK019851|Zfp687|78266|zinc finger protein 687	NM_030074|Zfp687|78266|zinc finger protein 687
mm9_v1_chr2_-_25316553_25316613	0.537182	CAGCAGG	BC029214|BC029214|227622|cDNA sequence BC029214	NM_153557|BC029214|227622|cDNA sequence BC029214
mm9_v1_chr18_+_65047408_65047414	0.536632	CAGCAGG	NM_001114386|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr2_+_163484110_163484121	0.536242	CAGCAGG	AK135505|Pkig|18769|protein kinase inhibitor, gamma	NM_001039390|Pkig|18769|protein kinase inhibitor, gamma	NM_001039391|Pkig|18769|protein kinase inhibitor, gamma	NM_001164055|Pkig|18769|protein kinase inhibitor, gamma
mm9_v1_chrX_+_148613496_148613589	0.535521	CAGCAGG	AK155453|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001005475|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr8_-_26311823_26311983	0.534127	CAGCAGG	BC125389|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	BC145709|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK037910|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK138513|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK046384|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177412|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177413|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_177089|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_199323|Tacc1|320165|transforming, acidic coiled-coil containing protein 1
mm9_v1_chr4_-_151851574_151851597	0.532546	CAGCAGG	BC039178|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	NM_010598|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	U31908|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr12_+_89961317_89961336	0.530946	CAGCAGG	AK078216|Nrxn3|18191|neurexin III	AK082055|Nrxn3|18191|neurexin III	NM_001198587|Nrxn3|18191|neurexin III	AK149250|Nrxn3|18191|neurexin III
mm9_v1_chr16_-_32868355_32868453	0.530917	CAGCAGG	BC057307|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK042428|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170223|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK122221|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK030368|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC060601|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	NM_172615|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170002|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK171583|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC067390|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene
mm9_v1_chr5_+_31014229_31014273	0.530893	CAGCAGG	AK044866|Dpysl5|65254|dihydropyrimidinase-like 5	BC065054|Dpysl5|65254|dihydropyrimidinase-like 5	NM_023047|Dpysl5|65254|dihydropyrimidinase-like 5	BC103789|Dpysl5|65254|dihydropyrimidinase-like 5
mm9_v1_chr7_+_107855215_107855319	0.530861	CAGCAGG	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr7_+_56501558_56501558	0.528358	CAGCAGG	AK039374|Nav2|78286|neuron navigator 2	NM_175272|Nav2|78286|neuron navigator 2
mm9_v1_chr2_-_5635547_5635807	0.526418	CAGCAGG	AK053173|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170123|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170777|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	NM_177343|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK147616|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr9_-_44773594_44773682	0.526008	CAGCAGG	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr16_+_31428833_31428879	0.5259	CAGCAGG	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr13_-_114408704_114408818	0.520437	CAGCAGG	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr18_-_38129384_38129452	0.519697	CAGCAGG	BC057367|Fchsd1|319262|FCH and double SH3 domains 1	NM_175684|Fchsd1|319262|FCH and double SH3 domains 1	BC052886|Fchsd1|319262|FCH and double SH3 domains 1	AK154732|Fchsd1|319262|FCH and double SH3 domains 1
mm9_v1_chr9_+_80012837_80012863	0.518213	CAGCAGG	NM_001039546|Myo6|17920|myosin VI	AK053882|Myo6|17920|myosin VI
mm9_v1_chrX_-_50973482_50973619	0.515508	CAGCAGG	AK003646|Cxx1b|553127|CAAX box 1 homolog B (human)	BC029838|Cxx1b|553127|CAAX box 1 homolog B (human)	NM_001018063|Cxx1b|553127|CAAX box 1 homolog B (human)
mm9_v1_chr10_-_60846055_60846288	0.515128	CAGCAGG	X99384|X99384|27355|cDNA sequence X99384	BC099531|X99384|27355|cDNA sequence X99384	BC052850|X99384|27355|cDNA sequence X99384	AK088577|X99384|27355|cDNA sequence X99384	AK146489|X99384|27355|cDNA sequence X99384	NM_013753|X99384|27355|cDNA sequence X99384
mm9_v1_chr16_+_8830175_8830249	0.513726	CAGCAGG	AK007485|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	NM_001081400|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116778|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116780|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene
mm9_v1_chr12_+_75098739_75098790	0.510084	CAGCAGG	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chr10_+_93498745_93498948	0.509837	CAGCAGG	AK044341|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	NM_053072|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	AK173157|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139019|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139022|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6
mm9_v1_chr14_+_28435613_28435695	0.509419	CAGCAGG	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr2_+_30837798_30837902	0.505509	CAGCAGG	NM_028846|Usp20|74270|ubiquitin specific peptidase 20	AF449715|Usp20|74270|ubiquitin specific peptidase 20	AK054279|Usp20|74270|ubiquitin specific peptidase 20	AK047242|Usp20|74270|ubiquitin specific peptidase 20	AK042612|Usp20|74270|ubiquitin specific peptidase 20	AK087412|Usp20|74270|ubiquitin specific peptidase 20	AK163663|Usp20|74270|ubiquitin specific peptidase 20	AK173083|Usp20|74270|ubiquitin specific peptidase 20	AK029890|Usp20|74270|ubiquitin specific peptidase 20
mm9_v1_chr5_+_130620730_130620855	0.50538	CAGCAGG	AK162568|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK083583|Kctd7|212919|potassium channel tetramerisation domain containing 7	NM_172509|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK029942|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK034583|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK140606|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC139070|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC141201|Kctd7|212919|potassium channel tetramerisation domain containing 7
mm9_v1_chr8_-_61390372_61390423	0.503127	CAGCAGG	BC111102|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	AK080614|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	NM_175032|Galntl6|270049|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm9_v1_chr17_+_86567003_86567165	0.502008	CAGCAGG	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr10_+_75716580_75716636	0.499692	CAGCAGG	NM_009115|S100b|20203|S100 protein, beta polypeptide, neural	BC061178|S100b|20203|S100 protein, beta polypeptide, neural	AK135083|S100b|20203|S100 protein, beta polypeptide, neural	AK161945|S100b|20203|S100 protein, beta polypeptide, neural
mm9_v1_chr15_+_79059802_79059887	0.499146	CAGCAGG	NM_001045558|Pick1|18693|protein interacting with C kinase 1	AK090155|Pick1|18693|protein interacting with C kinase 1	AK050224|Pick1|18693|protein interacting with C kinase 1	BC023088|Pick1|18693|protein interacting with C kinase 1	BC048788|Pick1|18693|protein interacting with C kinase 1	AK162724|Pick1|18693|protein interacting with C kinase 1
mm9_v1_chr9_+_106073255_106073259	0.498324	CAGCAGG	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr7_+_96781322_96781395	0.495894	CAGCAGG	AK032196|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial	NM_181407|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial	AK080798|Me3|109264|malic enzyme 3, NADP(+)-dependent, mitochondrial
mm9_v1_chr4_-_149112082_149112163	0.490596	CAGCAGG	AK079157|Tmem201|230917|transmembrane protein 201	AK078532|Tmem201|230917|transmembrane protein 201	AK039221|Tmem201|230917|transmembrane protein 201	BC072645|Tmem201|230917|transmembrane protein 201	NM_001025106|Tmem201|230917|transmembrane protein 201	NM_177672|Tmem201|230917|transmembrane protein 201	AK086543|Tmem201|230917|transmembrane protein 201	AK153631|Tmem201|230917|transmembrane protein 201
mm9_v1_chr9_-_106794266_106794289	0.490258	CAGCAGG	AK167580|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK131997|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	NM_029103|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC022761|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr5_+_30890386_30890554	0.488717	CAGCAGG	AF065162|Kcnk3|16527|potassium channel, subfamily K, member 3	BC032047|Kcnk3|16527|potassium channel, subfamily K, member 3	NM_010608|Kcnk3|16527|potassium channel, subfamily K, member 3	AB013345|Kcnk3|16527|potassium channel, subfamily K, member 3
mm9_v1_chr16_-_37385024_37385045	0.486897	CAGCAGG	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr7_-_25372613_25372684	0.481669	CAGCAGG	AK138180|Zfp575|101544|zinc finger protein 575	BC150867|Zfp575|101544|zinc finger protein 575	BC150873|Zfp575|101544|zinc finger protein 575	AK159025|Zfp575|101544|zinc finger protein 575	NM_001033205|Zfp575|101544|zinc finger protein 575
mm9_v1_chr1_-_133423902_133423973	0.481107	CAGCAGG	AK143649|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	NM_001081011|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr4_+_108132023_108132030	0.479415	CAGCAGG	AK041821|Zcchc11|230594|zinc finger, CCHC domain containing 11	NM_175472|Zcchc11|230594|zinc finger, CCHC domain containing 11
mm9_v1_chr1_-_134036041_134036303	0.478351	CAGCAGG	AK171569|Cdk18|18557|cyclin-dependent kinase 18	BC119617|Cdk18|18557|cyclin-dependent kinase 18	BC119618|Cdk18|18557|cyclin-dependent kinase 18	AK004998|Cdk18|18557|cyclin-dependent kinase 18	X69026|Cdk18|18557|cyclin-dependent kinase 18	NM_008795|Cdk18|18557|cyclin-dependent kinase 18
mm9_v1_chr18_+_34380575_34380671	0.476766	CAGCAGG	AK042021|Apc|11789|adenomatosis polyposis coli	AK080907|Apc|11789|adenomatosis polyposis coli	NM_007462|Apc|11789|adenomatosis polyposis coli	AK046280|Apc|11789|adenomatosis polyposis coli	AK045053|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr8_+_75095914_75096060	0.47257	CAGCAGG	AK157969|Tmem38a|74166|transmembrane protein 38A	AK165818|Tmem38a|74166|transmembrane protein 38A	EF988666|Tmem38a|74166|transmembrane protein 38A	BC014728|Tmem38a|74166|transmembrane protein 38A	AK034868|Nwd1|319555|NACHT and WD repeat domain containing 1	BC024788|Tmem38a|74166|transmembrane protein 38A	NM_144534|Tmem38a|74166|transmembrane protein 38A	AB261158|Tmem38a|74166|transmembrane protein 38A
mm9_v1_chr2_+_153171730_153171874	0.470494	CAGCAGG	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr3_+_104442568_104442606	0.469967	CAGCAGG	AK033516|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK079379|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK088762|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK161701|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK162682|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK166606|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	NM_009196|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	BC014777|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AF058055|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1
mm9_v1_chr7_+_53289065_53289193	0.468993	CAGCAGG	NM_153057|Nomo1|211548|nodal modulator 1	AK035957|Nomo1|211548|nodal modulator 1	AK142338|Nomo1|211548|nodal modulator 1	AK030584|Nomo1|211548|nodal modulator 1	AK150107|Nomo1|211548|nodal modulator 1	BC072630|Nomo1|211548|nodal modulator 1	AK082495|Nomo1|211548|nodal modulator 1
mm9_v1_chr1_+_155500166_155500298	0.467283	CAGCAGG	NM_026380|Rgs8|67792|regulator of G-protein signaling 8	BC065056|Rgs8|67792|regulator of G-protein signaling 8	AK044337|Rgs8|67792|regulator of G-protein signaling 8	AK142301|Rgs8|67792|regulator of G-protein signaling 8
mm9_v1_chr13_+_84361874_84361961	0.466258	CAGCAGG	NM_175187|Tmem161b|72745|transmembrane protein 161B	AK035319|Tmem161b|72745|transmembrane protein 161B	BC060067|Tmem161b|72745|transmembrane protein 161B	AK013305|Tmem161b|72745|transmembrane protein 161B	AK088393|Tmem161b|72745|transmembrane protein 161B	AK051974|Tmem161b|72745|transmembrane protein 161B	BC051663|Tmem161b|72745|transmembrane protein 161B
mm9_v1_chr15_+_97998090_97998244	0.464997	CAGCAGG	AK080988|AI836003|239650|expressed sequence AI836003	NM_177716|AI836003|239650|expressed sequence AI836003
mm9_v1_chr8_+_74743620_74743671	0.46418	CAGCAGG	AK075976|Fam32a|67922|family with sequence similarity 32, member A	NM_026455|Fam32a|67922|family with sequence similarity 32, member A	AB041658|Fam32a|67922|family with sequence similarity 32, member A	AK007524|Fam32a|67922|family with sequence similarity 32, member A	AK011922|Fam32a|67922|family with sequence similarity 32, member A	AK008285|Fam32a|67922|family with sequence similarity 32, member A	AK008336|Fam32a|67922|family with sequence similarity 32, member A	AK082792|Fam32a|67922|family with sequence similarity 32, member A	AK150416|Fam32a|67922|family with sequence similarity 32, member A	BC085487|Fam32a|67922|family with sequence similarity 32, member A
mm9_v1_chrX_-_50946805_50946943	0.463609	CAGCAGG	BC003436|Cxx1a|66158|CAAX box 1 homolog A (human)	AK002323|Cxx1a|66158|CAAX box 1 homolog A (human)	NM_024170|Cxx1a|66158|CAAX box 1 homolog A (human)
mm9_v1_chr7_-_30836383_30836414	0.459506	CAGCAGG	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr5_-_125659422_125659602	0.45722	CAGCAGG	AF125671|Ncor2|20602|nuclear receptor co-repressor 2	BC057218|Ncor2|20602|nuclear receptor co-repressor 2	AK147394|Ncor2|20602|nuclear receptor co-repressor 2	AF113002|Ncor2|20602|nuclear receptor co-repressor 2	NM_011424|Ncor2|20602|nuclear receptor co-repressor 2
mm9_v1_chr5_+_143178045_143178121	0.449777	CAGCAGG	NM_146257|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4	BC025599|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4
mm9_v1_chr9_-_64585562_64585585	0.448552	CAGCAGG	AK014268|Rab11a|53869|RAB11a, member RAS oncogene family	AK147122|Rab11a|53869|RAB11a, member RAS oncogene family	NM_017382|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr2_+_119373442_119373461	0.446164	CAGCAGG	NM_019769|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK156588|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK045920|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK168284|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK075723|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene
mm9_v1_chr7_+_104991443_104991474	0.445539	CAGCAGG	BC055740|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	BC060157|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	NM_011035|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1	BC079838|Pak1|18479|p21 protein (Cdc42/Rac)-activated kinase 1
mm9_v1_chr6_-_83781704_83781750	0.444353	CAGCAGG	AK140686|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK159287|Paip2b|232164|poly(A) binding protein interacting protein 2B	NM_146169|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chr4_+_108292534_108292631	0.436177	CAGCAGG	AK146601|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK043839|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	NM_177045|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK148162|Cc2d1b|319965|coiled-coil and C2 domain containing 1B
mm9_v1_chr10_-_79076744_79076769	0.435905	CAGCAGG	BC089008|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_198614|C2cd4c|237397|C2 calcium-dependent domain containing 4C	AK029946|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_001168624|C2cd4c|237397|C2 calcium-dependent domain containing 4C
mm9_v1_chr11_+_75345164_75345232	0.434783	CAGCAGG	AB120363|Slc43a2|215113|solute carrier family 43, member 2	BC042513|Slc43a2|215113|solute carrier family 43, member 2	NM_173388|Slc43a2|215113|solute carrier family 43, member 2
mm9_v1_chr18_+_23573908_23573935	0.434498	CAGCAGG	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr4_+_132776723_132776800	0.433451	CAGCAGG	NM_027152|Cd164l2|69655|CD164 sialomucin-like 2	AK139809|Cd164l2|69655|CD164 sialomucin-like 2	AK009888|Cd164l2|69655|CD164 sialomucin-like 2	BC111824|Cd164l2|69655|CD164 sialomucin-like 2
mm9_v1_chr2_+_150612469_150612531	0.431753	CAGCAGG	AK169052|Pygb|110078|brain glycogen phosphorylase	AK147763|Pygb|110078|brain glycogen phosphorylase	AK032769|Pygb|110078|brain glycogen phosphorylase	AK169631|Pygb|110078|brain glycogen phosphorylase	AK134667|Pygb|110078|brain glycogen phosphorylase	AK168381|Pygb|110078|brain glycogen phosphorylase	AK142716|Pygb|110078|brain glycogen phosphorylase	BC031457|Pygb|110078|brain glycogen phosphorylase	BC035283|Pygb|110078|brain glycogen phosphorylase	NM_153781|Pygb|110078|brain glycogen phosphorylase
mm9_v1_chr2_-_104250490_104250490	0.431313	CAGCAGG	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr2_-_165151935_165152001	0.430626	CAGCAGG	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr2_+_69058005_69058054	0.429914	CAGCAGG	AK148450|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	Z47787|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	BC111905|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	AK148465|G6pc2|14378|glucose-6-phosphatase, catalytic, 2	NM_021331|G6pc2|14378|glucose-6-phosphatase, catalytic, 2
mm9_v1_chr8_-_72662994_72663095	0.429893	CAGCAGG	AF123704|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	L43164|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AF094761|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK146148|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK087462|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	AK052298|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	NM_001025589|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein	NM_011266|Rfxank|19727|regulatory factor X-associated ankyrin-containing protein
mm9_v1_chr9_-_21856445_21856470	0.429	CAGCAGG	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr17_+_24987499_24987611	0.427481	CAGCAGG	AK150557|Hagh|14651|hydroxyacyl glutathione hydrolase	AK151231|Hagh|14651|hydroxyacyl glutathione hydrolase	AK152742|Hagh|14651|hydroxyacyl glutathione hydrolase	AK165777|Hagh|14651|hydroxyacyl glutathione hydrolase	BC019817|Hagh|14651|hydroxyacyl glutathione hydrolase	NM_001159626|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr11_+_52578152_52578230	0.426756	CAGCAGG	AK046350|Fstl4|320027|follistatin-like 4	AK081114|Fstl4|320027|follistatin-like 4	AF374459|Fstl4|320027|follistatin-like 4	NM_177059|Fstl4|320027|follistatin-like 4	BC132353|Fstl4|320027|follistatin-like 4	BC144824|Fstl4|320027|follistatin-like 4
mm9_v1_chr11_+_74644411_74644428	0.423636	CAGCAGG	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr7_+_80520360_80520429	0.422767	CAGCAGG	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr10_+_84849558_84849599	0.422726	CAGCAGG	BC096535|Btbd11|74007|BTB (POZ) domain containing 11	NM_028709|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr13_-_51889012_51889103	0.418966	CAGCAGG	BC049780|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	NM_013660|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	AK132688|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm9_v1_chr7_-_112788821_112788929	0.418151	CAGCAGG	BC028310|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC013794|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC022942|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK009100|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK154772|Arfip2|76932|ADP-ribosylation factor interacting protein 2	NM_029802|Arfip2|76932|ADP-ribosylation factor interacting protein 2
mm9_v1_chr5_+_123526279_123526440	0.417769	CAGCAGG	NM_001039723|Tmem120b|330189|transmembrane protein 120B	AK132283|Tmem120b|330189|transmembrane protein 120B	AK158123|Tmem120b|330189|transmembrane protein 120B	BC022593|Tmem120b|330189|transmembrane protein 120B	BC115785|Tmem120b|330189|transmembrane protein 120B	BC118014|Tmem120b|330189|transmembrane protein 120B	AK172110|Tmem120b|330189|transmembrane protein 120B
mm9_v1_chr11_-_3271367_3271408	0.416721	CAGCAGG	AB005132|Limk2|16886|LIM motif-containing protein kinase 2	NM_173053|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr1_-_55283618_55283625	0.414116	CAGCAGG	AK012229|Rftn2|74013|raftlin family member 2	AK031158|Rftn2|74013|raftlin family member 2	BC038341|Rftn2|74013|raftlin family member 2	NM_028713|Rftn2|74013|raftlin family member 2
mm9_v1_chr5_+_3344201_3344322	0.413769	CAGCAGG	AK078973|Cdk6|12571|cyclin-dependent kinase 6	AF132483|Cdk6|12571|cyclin-dependent kinase 6	NM_009873|Cdk6|12571|cyclin-dependent kinase 6	BC119360|Cdk6|12571|cyclin-dependent kinase 6	BC120595|Cdk6|12571|cyclin-dependent kinase 6
mm9_v1_chr11_+_50038815_50038936	0.413519	CAGCAGG	AK155336|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B	NM_145926|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B
mm9_v1_chr13_+_93381086_93381215	0.413405	CAGCAGG	AK165334|Serinc5|218442|serine incorporator 5	BC049189|Serinc5|218442|serine incorporator 5	BC062131|Serinc5|218442|serine incorporator 5	NM_172588|Serinc5|218442|serine incorporator 5	AK037699|Serinc5|218442|serine incorporator 5	AK163675|Serinc5|218442|serine incorporator 5	AB029501|Serinc5|218442|serine incorporator 5
mm9_v1_chr8_+_28134259_28134401	0.41179	CAGCAGG	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr11_+_98209978_98210141	0.41164	CAGCAGG	BC026568|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	NM_144828|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	BC011122|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B
mm9_v1_chr8_+_47556353_47556483	0.408957	CAGCAGG	NM_007981|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK153050|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK145900|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK158388|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr4_+_115500670_115500814	0.40584	CAGCAGG	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr3_-_104667319_104667422	0.405778	CAGCAGG	AK161370|Capza1|12340|capping protein (actin filament) muscle Z-line, alpha 1	NM_009797|Capza1|12340|capping protein (actin filament) muscle Z-line, alpha 1
mm9_v1_chr14_-_34260323_34260352	0.404418	CAGCAGG	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr7_-_105509797_105509909	0.402948	CAGCAGG	AK035461|Tsku|244152|tsukushin	AK053973|Tsku|244152|tsukushin	AK137208|Tsku|244152|tsukushin	NM_001024619|Tsku|244152|tsukushin	NM_001168540|Tsku|244152|tsukushin	NM_001168541|Tsku|244152|tsukushin	NM_001168539|Tsku|244152|tsukushin
mm9_v1_chr9_-_50425561_50425568	0.40248	CAGCAGG	NM_001134902|AU019823|270156|expressed sequence AU019823	NM_212449|AU019823|270156|expressed sequence AU019823
mm9_v1_chr7_-_105326687_105326735	0.402092	CAGCAGG	AK164293|Capn5|12337|calpain 5	NM_007602|Capn5|12337|calpain 5	U85020|Capn5|12337|calpain 5	Y10656|Capn5|12337|calpain 5	AK170034|Capn5|12337|calpain 5
mm9_v1_chr6_-_56747675_56747806	0.39928	CAGCAGG	AK129374|Kbtbd2|210973|kelch repeat and BTB (POZ) domain containing 2	AK028396|Kbtbd2|210973|kelch repeat and BTB (POZ) domain containing 2	NM_145958|Kbtbd2|210973|kelch repeat and BTB (POZ) domain containing 2
mm9_v1_chr18_+_37105758_37105860	0.397405	CAGCAGG	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr1_+_158488917_158488917	0.39734	CAGCAGG	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chr2_+_167757825_167757866	0.391728	CAGCAGG	AK157431|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1	NM_011201|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1	AK165567|Ptpn1|19246|protein tyrosine phosphatase, non-receptor type 1
mm9_v1_chr11_-_115375672_115375704	0.390191	CAGCAGG	BC003758|Hn1|15374|hematological and neurological expressed sequence 1	NM_008258|Hn1|15374|hematological and neurological expressed sequence 1	U90123|Hn1|15374|hematological and neurological expressed sequence 1	AK167961|Hn1|15374|hematological and neurological expressed sequence 1	AK013122|Hn1|15374|hematological and neurological expressed sequence 1	AK004909|Hn1|15374|hematological and neurological expressed sequence 1	AK010057|Hn1|15374|hematological and neurological expressed sequence 1	AK159784|Hn1|15374|hematological and neurological expressed sequence 1	AK167466|Hn1|15374|hematological and neurological expressed sequence 1	AK168632|Hn1|15374|hematological and neurological expressed sequence 1	AK014212|Hn1|15374|hematological and neurological expressed sequence 1	AK152560|Hn1|15374|hematological and neurological expressed sequence 1	AK150410|Hn1|15374|hematological and neurological expressed sequence 1
mm9_v1_chr1_-_178205404_178205442	0.390114	CAGCAGG	AK043287|Pld5|319455|phospholipase D family, member 5	AK046294|Pld5|319455|phospholipase D family, member 5	AK144116|Pld5|319455|phospholipase D family, member 5	AK136851|Pld5|319455|phospholipase D family, member 5	AK136888|Pld5|319455|phospholipase D family, member 5	NM_176916|Pld5|319455|phospholipase D family, member 5
mm9_v1_chr11_-_72609306_72609347	0.388916	CAGCAGG	BC086682|Cyb5d2|192986|cytochrome b5 domain containing 2	NM_001024926|Cyb5d2|192986|cytochrome b5 domain containing 2	AK142515|Cyb5d2|192986|cytochrome b5 domain containing 2
mm9_v1_chr4_+_138908480_138908511	0.388258	CAGCAGG	NM_001039200|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	NM_146157|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr2_+_181100083_181100251	0.387326	CAGCAGG	AK159801|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_001048148|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK049764|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC021513|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC004646|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC027218|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK052236|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chr2_-_156904966_156905000	0.386563	CAGCAGG	AK147227|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene	NM_001164663|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene
mm9_v1_chr4_-_128483355_128483429	0.386448	CAGCAGG	NM_001081098|Zfp362|230761|zinc finger protein 362
mm9_v1_chr10_-_80693488_80693567	0.384941	CAGCAGG	AY349150|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	BC048903|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038990|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	NM_178662|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK039411|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK028298|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK038483|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK162959|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)	AK086723|Atcay|16467|ataxia, cerebellar, Cayman type homolog (human)
mm9_v1_chr8_-_97666364_97666472	0.384451	CAGCAGG	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr13_+_49282844_49282955	0.38343	CAGCAGG	AK159111|Ninj1|18081|ninjurin 1	AK077602|Ninj1|18081|ninjurin 1	AK171973|Ninj1|18081|ninjurin 1	AK160045|Ninj1|18081|ninjurin 1	AK155741|Ninj1|18081|ninjurin 1	BC118937|Ninj1|18081|ninjurin 1	NM_013610|Ninj1|18081|ninjurin 1	U91513|Ninj1|18081|ninjurin 1	BC049600|Ninj1|18081|ninjurin 1
mm9_v1_chr11_-_115128540_115128560	0.383023	CAGCAGG	NM_010350|Grin2c|14813|glutamate receptor, ionotropic, NMDA2C (epsilon 3)
mm9_v1_chr18_+_35989376_35989483	0.377979	CAGCAGG	AK005364|Cxxc5|67393|CXXC finger 5	BC089314|Cxxc5|67393|CXXC finger 5	NM_133687|Cxxc5|67393|CXXC finger 5
mm9_v1_chr15_-_98593505_98593647	0.377235	CAGCAGG	D87900|Arf3|11842|ADP-ribosylation factor 3	BC014778|Arf3|11842|ADP-ribosylation factor 3	NM_007478|Arf3|11842|ADP-ribosylation factor 3	AK171354|Arf3|11842|ADP-ribosylation factor 3	BC024935|Arf3|11842|ADP-ribosylation factor 3	AK154948|Arf3|11842|ADP-ribosylation factor 3	AK165176|Arf3|11842|ADP-ribosylation factor 3	AK151296|Arf3|11842|ADP-ribosylation factor 3
mm9_v1_chr3_-_88897207_88897284	0.376875	CAGCAGG	AK039664|Rusc1|72296|RUN and SH3 domain containing 1	BC056360|Rusc1|72296|RUN and SH3 domain containing 1	AK042689|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083807|Rusc1|72296|RUN and SH3 domain containing 1	NM_028188|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr4_+_128814102_128814307	0.376779	CAGCAGG	AK005096|Fndc5|384061|fibronectin type III domain containing 5	AJ401376|Fndc5|384061|fibronectin type III domain containing 5	BC109184|Fndc5|384061|fibronectin type III domain containing 5	NM_027402|Fndc5|384061|fibronectin type III domain containing 5	BC109183|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chrX_+_39502588_39502859	0.37673	CAGCAGG	NM_001077712|Stag2|20843|stromal antigen 2	AK050415|Stag2|20843|stromal antigen 2	AK077318|Stag2|20843|stromal antigen 2	AK020968|Stag2|20843|stromal antigen 2	AK020316|Stag2|20843|stromal antigen 2
mm9_v1_chr5_-_51945054_51945159	0.376683	CAGCAGG	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr8_-_97958738_97958768	0.375044	CAGCAGG	AK172603|Gtl3|14894|gene trap locus 3	NM_008187|Gtl3|14894|gene trap locus 3
mm9_v1_chr14_+_67530044_67530096	0.373435	CAGCAGG	AK043910|Pnma2|239157|paraneoplastic antigen MA2	NM_175498|Pnma2|239157|paraneoplastic antigen MA2	AK220357|Pnma2|239157|paraneoplastic antigen MA2	AK043718|Pnma2|239157|paraneoplastic antigen MA2
mm9_v1_chr18_-_35862744_35862797	0.372061	CAGCAGG	AK012521|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	BC026452|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	AK030483|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	NM_029669|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18
mm9_v1_chr9_+_45820886_45820906	0.371909	CAGCAGG	NM_027498|Sik3|70661|SIK family kinase 3
mm9_v1_chr13_-_96902531_96902531	0.371565	CAGCAGG	AK173092|Sv2c|75209|synaptic vesicle glycoprotein 2c	NM_029210|Sv2c|75209|synaptic vesicle glycoprotein 2c
mm9_v1_chr5_-_34630913_34631012	0.370642	CAGCAGG	BC139050|Zfyve28|231125|zinc finger, FYVE domain containing 28	BC139051|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK129414|Zfyve28|231125|zinc finger, FYVE domain containing 28	NM_001015039|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK036334|Zfyve28|231125|zinc finger, FYVE domain containing 28
mm9_v1_chr4_-_118081793_118081882	0.370552	CAGCAGG	GU433214|Szt2|230676|seizure threshold 2	FJ998170|Szt2|230676|seizure threshold 2	NM_198170|Szt2|230676|seizure threshold 2
mm9_v1_chr11_+_6191599_6191621	0.370392	CAGCAGG	AK147289|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	NM_010956|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK169286|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chr10_+_80217947_80217975	0.368143	CAGCAGG	AK035144|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	AY196089|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	NM_199322|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)	AY376663|Dot1l|208266|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm9_v1_chr8_+_26629214_26629332	0.367947	CAGCAGG	NM_001079908|Fgfr1|14182|fibroblast growth factor receptor 1	NM_001079909|Fgfr1|14182|fibroblast growth factor receptor 1	NM_010206|Fgfr1|14182|fibroblast growth factor receptor 1	AK049704|Fgfr1|14182|fibroblast growth factor receptor 1	S74765|Fgfr1|14182|fibroblast growth factor receptor 1	BC010200|Fgfr1|14182|fibroblast growth factor receptor 1
mm9_v1_chr1_-_182126032_182126150	0.366111	CAGCAGG	AK004791|Adck3|67426|aarF domain containing kinase 3	AK014605|Adck3|67426|aarF domain containing kinase 3	BC030937|Adck3|67426|aarF domain containing kinase 3	NM_023341|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chr1_-_37592976_37593103	0.364376	CAGCAGG	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr3_+_105255247_105255337	0.36333	CAGCAGG	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr3_-_95032589_95032623	0.362894	CAGCAGG	AK152708|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	NM_019914|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm9_v1_chr5_-_123582637_123582709	0.360857	CAGCAGG	NM_175092|Rhof|23912|ras homolog gene family, member f
mm9_v1_chr9_+_56266618_56266679	0.360608	CAGCAGG	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr19_-_24936327_24936331	0.359382	CAGCAGG	AK035507|Pgm5|226041|phosphoglucomutase 5	NM_175013|Pgm5|226041|phosphoglucomutase 5
mm9_v1_chr18_+_37179802_37179999	0.357386	CAGCAGG	AY013759|Pcdha12|192164|protocadherin alpha 12	NM_138663|Pcdha12|192164|protocadherin alpha 12	AB008180|Pcdha12|192164|protocadherin alpha 12
mm9_v1_chr11_-_95448869_95449017	0.356954	CAGCAGG	AF105292|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	BC038365|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	AK037248|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	NM_033217|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)
mm9_v1_chr3_-_84284304_84284362	0.354687	CAGCAGG	BC042779|Fhdc1|229474|FH2 domain containing 1	AK145217|Fhdc1|229474|FH2 domain containing 1	NM_001033301|Fhdc1|229474|FH2 domain containing 1
mm9_v1_chr6_-_72312366_72312409	0.353284	CAGCAGG	BC005559|Rnf181|66510|ring finger protein 181	BC083119|Rnf181|66510|ring finger protein 181	NM_025607|Rnf181|66510|ring finger protein 181	AK168670|Rnf181|66510|ring finger protein 181	AK010854|Rnf181|66510|ring finger protein 181	AK014094|Rnf181|66510|ring finger protein 181	AK159788|Rnf181|66510|ring finger protein 181	AK166904|Rnf181|66510|ring finger protein 181	AK166995|Rnf181|66510|ring finger protein 181	AK167396|Rnf181|66510|ring finger protein 181	AK167633|Rnf181|66510|ring finger protein 181	AK167935|Rnf181|66510|ring finger protein 181
mm9_v1_chr5_-_121038602_121038704	0.350839	CAGCAGG	AK037856|Tpcn1|252972|two pore channel 1	AK077411|Tpcn1|252972|two pore channel 1	BC058951|Tpcn1|252972|two pore channel 1	NM_145853|Tpcn1|252972|two pore channel 1	AF217002|Tpcn1|252972|two pore channel 1	AK148129|Tpcn1|252972|two pore channel 1
mm9_v1_chr2_-_151458256_151458277	0.350155	CAGCAGG	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr19_-_4305954_4306041	0.348481	CAGCAGG	BC053922|Adrbk1|110355|adrenergic receptor kinase, beta 1	NM_130863|Adrbk1|110355|adrenergic receptor kinase, beta 1	BC003196|Adrbk1|110355|adrenergic receptor kinase, beta 1	AF333028|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr17_+_45692647_45692701	0.348044	CAGCAGG	AK008843|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151450|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151692|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK011965|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	BC030923|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	NM_008690|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK153248|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK088585|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon
mm9_v1_chr2_-_167318313_167318390	0.344528	CAGCAGG	AK051741|Spata2|263876|spermatogenesis associated 2	AK144826|Spata2|263876|spermatogenesis associated 2	AK171240|Spata2|263876|spermatogenesis associated 2	AK171664|Spata2|263876|spermatogenesis associated 2	AK171852|Spata2|263876|spermatogenesis associated 2	BC034597|Spata2|263876|spermatogenesis associated 2	AK156188|Spata2|263876|spermatogenesis associated 2	AK170356|Spata2|263876|spermatogenesis associated 2	AK162743|Spata2|263876|spermatogenesis associated 2	NM_170756|Spata2|263876|spermatogenesis associated 2
mm9_v1_chr5_-_149364353_149364422	0.343684	CAGCAGG	NM_011908|Ubl3|24109|ubiquitin-like 3	BC024507|Ubl3|24109|ubiquitin-like 3	BC043729|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr15_+_88919467_88919574	0.343492	CAGCAGG	BC141293|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK088096|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK054432|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK161059|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	AK005048|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	BC117817|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	BC117818|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene	NM_027905|1300018J18Rik|223776|RIKEN cDNA 1300018J18 gene
mm9_v1_chr2_+_144425688_144425695	0.342522	CAGCAGG	NM_025314|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr11_-_109159357_109159494	0.341747	CAGCAGG	BC129899|Rgs9|19739|regulator of G-protein signaling 9	BC129898|Rgs9|19739|regulator of G-protein signaling 9	AF011358|Rgs9|19739|regulator of G-protein signaling 9	AK138159|Rgs9|19739|regulator of G-protein signaling 9	AK085443|Rgs9|19739|regulator of G-protein signaling 9	AF125046|Rgs9|19739|regulator of G-protein signaling 9	AK164961|Rgs9|19739|regulator of G-protein signaling 9	NM_001165934|Rgs9|19739|regulator of G-protein signaling 9	NM_011268|Rgs9|19739|regulator of G-protein signaling 9
mm9_v1_chr7_+_28376578_28376874	0.339855	CAGCAGG	AK158792|Akt2|11652|thymoma viral proto-oncogene 2	NM_001110208|Akt2|11652|thymoma viral proto-oncogene 2	AK144217|Akt2|11652|thymoma viral proto-oncogene 2	U22445|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr9_+_54434140_54434327	0.339018	CAGCAGG	AK158646|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159051|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK117103|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK152353|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159666|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK160054|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK150618|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK164038|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168149|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK167822|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK151304|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK153459|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168049|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK010065|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK032787|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK047951|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168034|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK084523|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC049956|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	NM_029573|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK169152|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC034273|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr9_+_43875103_43875168	0.338836	CAGCAGG	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr8_+_41947720_41947804	0.338464	CAGCAGG	NM_007514|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	NM_001044740|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK155558|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK169923|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK154621|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	AK171369|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	DQ086834|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	U35650|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	BC127082|Slc7a2|11988|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
mm9_v1_chr2_-_153458515_153458541	0.33795	CAGCAGG	NM_001195390|Commd7|99311|COMM domain containing 7	NM_133850|Commd7|99311|COMM domain containing 7
mm9_v1_chr5_-_107718503_107718613	0.337115	CAGCAGG	AK165763|Tgfbr3|21814|transforming growth factor, beta receptor III	BC070428|Tgfbr3|21814|transforming growth factor, beta receptor III	AK166082|Tgfbr3|21814|transforming growth factor, beta receptor III	NM_011578|Tgfbr3|21814|transforming growth factor, beta receptor III
mm9_v1_chr9_+_121669121_121669172	0.336516	CAGCAGG	NM_001166644|Zfp651|270210|zinc finger protein 651
mm9_v1_chr6_+_113257130_113257306	0.334157	CAGCAGG	AK043372|Brpf1|78783|bromodomain and PHD finger containing, 1	AK156375|Brpf1|78783|bromodomain and PHD finger containing, 1	BC046521|Brpf1|78783|bromodomain and PHD finger containing, 1	NM_030178|Brpf1|78783|bromodomain and PHD finger containing, 1	AK177868|Brpf1|78783|bromodomain and PHD finger containing, 1	BC138361|Brpf1|78783|bromodomain and PHD finger containing, 1	BC145256|Brpf1|78783|bromodomain and PHD finger containing, 1
mm9_v1_chr11_+_70353656_70353766	0.333786	CAGCAGG	NM_008876|Pld2|18806|phospholipase D2
mm9_v1_chr2_-_168415690_168415866	0.330733	CAGCAGG	AF289078|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887582|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887588|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887594|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887600|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001136073|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36575|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	U36576|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_010899|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	BC064006|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK081853|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887584|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887586|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887590|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887592|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887596|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887602|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887604|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	NM_001037177|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	AK135414|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2	EU887598|Nfatc2|18019|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2
mm9_v1_chr11_-_88725877_88725929	0.329929	CAGCAGG	AK076216|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_001042541|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr15_-_89026839_89026926	0.329844	CAGCAGG	BC030395|Fam116b|69440|family with sequence similarity 116, member B	BC139003|Fam116b|69440|family with sequence similarity 116, member B	AK084555|Fam116b|69440|family with sequence similarity 116, member B	NM_027081|Fam116b|69440|family with sequence similarity 116, member B	AK154949|Fam116b|69440|family with sequence similarity 116, member B
mm9_v1_chr7_+_28390872_28390878	0.32756	CAGCAGG	BC026151|Akt2|11652|thymoma viral proto-oncogene 2	NM_007434|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr10_-_22451211_22451252	0.326453	CAGCAGG	NM_011603|Tbpl1|237336|TATA box binding protein-like 1
mm9_v1_chr2_+_177876635_177876639	0.325044	CAGCAGG	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr10_+_59740373_59740429	0.323199	CAGCAGG	NM_001146120|Psap|19156|prosaposin	NM_001146121|Psap|19156|prosaposin	NM_001146122|Psap|19156|prosaposin	NM_001146123|Psap|19156|prosaposin	NM_011179|Psap|19156|prosaposin	AK167902|Psap|19156|prosaposin	AK151686|Psap|19156|prosaposin	AK152203|Psap|19156|prosaposin
mm9_v1_chr8_+_90723069_90723153	0.322654	CAGCAGG	AK077553|Papd5|214627|PAP associated domain containing 5	NM_001164497|Papd5|214627|PAP associated domain containing 5	NM_001164498|Papd5|214627|PAP associated domain containing 5	NM_001164499|Papd5|214627|PAP associated domain containing 5	BC059053|Papd5|214627|PAP associated domain containing 5	BC144796|Papd5|214627|PAP associated domain containing 5	BC144797|Papd5|214627|PAP associated domain containing 5	BC145737|Papd5|214627|PAP associated domain containing 5
mm9_v1_chr1_+_137662648_137662798	0.322262	CAGCAGG	NM_013750|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	AK003767|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	BC023376|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	BC023408|Phlda3|27280|pleckstrin homology-like domain, family A, member 3
mm9_v1_chr1_+_120285634_120285634	0.319037	CAGCAGG	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr5_+_125956221_125956249	0.318971	CAGCAGG	AK019063|Aacs|78894|acetoacetyl-CoA synthetase	AK044017|Aacs|78894|acetoacetyl-CoA synthetase	AK147189|Aacs|78894|acetoacetyl-CoA synthetase	AK150266|Aacs|78894|acetoacetyl-CoA synthetase	AK165418|Aacs|78894|acetoacetyl-CoA synthetase	AK165457|Aacs|78894|acetoacetyl-CoA synthetase	AK170120|Aacs|78894|acetoacetyl-CoA synthetase	AK170653|Aacs|78894|acetoacetyl-CoA synthetase	AK170856|Aacs|78894|acetoacetyl-CoA synthetase	NM_030210|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr4_+_129138915_129138922	0.318504	CAGCAGG	BC049111|Bsdc1|100383|BSD domain containing 1	NM_133889|Bsdc1|100383|BSD domain containing 1
mm9_v1_chr3_-_40886957_40886982	0.31795	CAGCAGG	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr7_+_149135647_149135669	0.317459	CAGCAGG	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr4_+_122860705_122860828	0.317183	CAGCAGG	AK032591|Hpcal4|170638|hippocalcin-like 4	NM_174998|Hpcal4|170638|hippocalcin-like 4
mm9_v1_chr18_+_67293403_67293479	0.315972	CAGCAGG	AK032407|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	AY179169|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	NM_010307|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type
mm9_v1_chr2_-_103637795_103637829	0.312713	CAGCAGG	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr10_-_77365164_77365282	0.312251	CAGCAGG	AY061858|Lrrc3|237387|leucine rich repeat containing 3	AK043535|Lrrc3|237387|leucine rich repeat containing 3	NM_145152|Lrrc3|237387|leucine rich repeat containing 3
mm9_v1_chr11_+_103994160_103994195	0.312166	CAGCAGG	AK158806|Crhr1|12921|corticotropin releasing hormone receptor 1	NM_007762|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr2_+_59322709_59322728	0.306692	CAGCAGG	NM_029723|Dapl1|76747|death associated protein-like 1	AK009567|Dapl1|76747|death associated protein-like 1	BC116916|Dapl1|76747|death associated protein-like 1	BC116920|Dapl1|76747|death associated protein-like 1	BC063096|Dapl1|76747|death associated protein-like 1	BC052745|Dapl1|76747|death associated protein-like 1
mm9_v1_chr11_-_77303157_77303183	0.305237	CAGCAGG	BC151158|Ankrd13b|268445|ankyrin repeat domain 13b	BC172028|Ankrd13b|268445|ankyrin repeat domain 13b	NM_172945|Ankrd13b|268445|ankyrin repeat domain 13b
mm9_v1_chr11_+_60351159_60351225	0.304723	CAGCAGG	NM_172943|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chr4_-_147662005_147662073	0.304019	CAGCAGG	BC070441|Ptchd2|242748|patched domain containing 2	BC072569|Ptchd2|242748|patched domain containing 2	AK090326|Ptchd2|242748|patched domain containing 2	NM_001083342|Ptchd2|242748|patched domain containing 2
mm9_v1_chr13_-_101500877_101500928	0.303353	CAGCAGG	X74145|Cdk7|12572|cyclin-dependent kinase 7	BC068160|Cdk7|12572|cyclin-dependent kinase 7	AK039084|Cdk7|12572|cyclin-dependent kinase 7	AK168286|Cdk7|12572|cyclin-dependent kinase 7	NM_009874|Cdk7|12572|cyclin-dependent kinase 7
mm9_v1_chr17_-_26056379_26056705	0.302492	CAGCAGG	AB232639|Rab40c|224624|Rab40c, member RAS oncogene family	AF422144|Rab40c|224624|Rab40c, member RAS oncogene family	BC037461|Rab40c|224624|Rab40c, member RAS oncogene family	BC027008|Rab40c|224624|Rab40c, member RAS oncogene family	NM_139154|Rab40c|224624|Rab40c, member RAS oncogene family
mm9_v1_chr1_+_55462764_55462802	0.301588	CAGCAGG	AK083136|Plcl1|227120|phospholipase C-like 1	AK161943|Plcl1|227120|phospholipase C-like 1	NM_001114663|Plcl1|227120|phospholipase C-like 1	AK135610|Plcl1|227120|phospholipase C-like 1
mm9_v1_chr19_+_12040311_12040373	0.299526	CAGCAGG	NM_001033174|Osbp|76303|oxysterol binding protein
mm9_v1_chr11_+_75469516_75469674	0.296758	CAGCAGG	AK171107|Myo1c|17913|myosin IC	NM_001080775|Myo1c|17913|myosin IC	AK154294|Myo1c|17913|myosin IC	AK165680|Myo1c|17913|myosin IC	AY007255|Myo1c|17913|myosin IC
mm9_v1_chr14_-_21613162_21613325	0.295407	CAGCAGG	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr9_-_107444181_107444195	0.295201	CAGCAGG	AK162586|Cyb561d2|56368|cytochrome b-561 domain containing 2	AK030225|Cyb561d2|56368|cytochrome b-561 domain containing 2	NM_019720|Cyb561d2|56368|cytochrome b-561 domain containing 2
mm9_v1_chr1_+_34636537_34636571	0.294847	CAGCAGG	NM_213727|Fam123c|211383|family with sequence similarity 123, member C	BC070435|Fam123c|211383|family with sequence similarity 123, member C
mm9_v1_chr11_-_107331865_107332065	0.292046	CAGCAGG	BC082333|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	BC108351|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AB077281|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK153625|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171918|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK172137|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	NM_145823|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171340|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr8_+_125966855_125966934	0.291204	CAGCAGG	AK081295|Def8|23854|differentially expressed in FDCP 8	AK133979|Def8|23854|differentially expressed in FDCP 8	AK028726|Def8|23854|differentially expressed in FDCP 8	AK050405|Def8|23854|differentially expressed in FDCP 8	AK087778|Def8|23854|differentially expressed in FDCP 8	AK164147|Def8|23854|differentially expressed in FDCP 8	NM_054046|Def8|23854|differentially expressed in FDCP 8	AK034028|Def8|23854|differentially expressed in FDCP 8	AK046271|Def8|23854|differentially expressed in FDCP 8	AK086174|Def8|23854|differentially expressed in FDCP 8	BC003306|Def8|23854|differentially expressed in FDCP 8	AK150334|Def8|23854|differentially expressed in FDCP 8	AK150994|Def8|23854|differentially expressed in FDCP 8
mm9_v1_chr11_+_109224104_109224273	0.291174	CAGCAGG	NM_010303|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK011851|Gna13|14674|guanine nucleotide binding protein, alpha 13	M63660|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK149766|Gna13|14674|guanine nucleotide binding protein, alpha 13	BC057665|Gna13|14674|guanine nucleotide binding protein, alpha 13
mm9_v1_chr15_-_77137425_77137482	0.289179	CAGCAGG	AK139555|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110827|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_053104|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_175387|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr6_+_124254668_124254724	0.288894	CAGCAGG	NM_001170395|Cd163|93671|CD163 antigen	NM_053094|Cd163|93671|CD163 antigen	AF274883|Cd163|93671|CD163 antigen	BC144848|Cd163|93671|CD163 antigen	BC145793|Cd163|93671|CD163 antigen	DQ058616|Cd163|93671|CD163 antigen	DQ058617|Cd163|93671|CD163 antigen
mm9_v1_chr11_+_53380870_53380943	0.288307	CAGCAGG	AK161223|Kif3a|16568|kinesin family member 3A	NM_008443|Kif3a|16568|kinesin family member 3A	D12645|Kif3a|16568|kinesin family member 3A	AK161920|Kif3a|16568|kinesin family member 3A	AK169425|Kif3a|16568|kinesin family member 3A	BC052707|Kif3a|16568|kinesin family member 3A	BC044720|Kif3a|16568|kinesin family member 3A	AK147078|Kif3a|16568|kinesin family member 3A	BC023936|Kif3a|16568|kinesin family member 3A
mm9_v1_chr10_+_127814144_127814228	0.286693	CAGCAGG	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr18_-_20904585_20904945	0.281496	CAGCAGG	AK144997|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138247|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK163956|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164262|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164724|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK137385|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138610|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AF097158|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	NM_019737|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm9_v1_chr7_-_151656610_151656667	0.280832	CAGCAGG	U03184|Cttn|13043|cortactin	BC011434|Cttn|13043|cortactin	AK168871|Cttn|13043|cortactin	AK165555|Cttn|13043|cortactin	AK168699|Cttn|13043|cortactin	AK148010|Cttn|13043|cortactin	AK146856|Cttn|13043|cortactin	NM_007803|Cttn|13043|cortactin	AK084249|Cttn|13043|cortactin	AK168945|Cttn|13043|cortactin
mm9_v1_chr17_+_27110101_27110235	0.2805	CAGCAGG	BC049933|Zbtb9|474156|zinc finger and BTB domain containing 9	NM_001005916|Zbtb9|474156|zinc finger and BTB domain containing 9	AK154850|Zbtb9|474156|zinc finger and BTB domain containing 9	AK030262|Zbtb9|474156|zinc finger and BTB domain containing 9
mm9_v1_chr14_-_78488780_78488813	0.279974	CAGCAGG	BC120488|AU021034|219170|expressed sequence AU021034	BC120490|AU021034|219170|expressed sequence AU021034	AK047611|AU021034|219170|expressed sequence AU021034	AK034132|AU021034|219170|expressed sequence AU021034	NM_177629|AU021034|219170|expressed sequence AU021034
mm9_v1_chr10_+_79167102_79167137	0.278677	CAGCAGG	NM_001077184|Bsg|12215|basigin	NM_009768|Bsg|12215|basigin
mm9_v1_chr15_+_80541675_80541764	0.278589	CAGCAGG	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr7_-_148042164_148042281	0.278066	CAGCAGG	AK011508|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	BC019730|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	AK161239|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	NM_018742|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr2_+_24909898_24909973	0.277911	CAGCAGG	NM_001039386|Nelf|56876|nasal embryonic LHRH factor	NM_001039387|Nelf|56876|nasal embryonic LHRH factor	NM_001177654|Nelf|56876|nasal embryonic LHRH factor	NM_001177655|Nelf|56876|nasal embryonic LHRH factor	NM_020276|Nelf|56876|nasal embryonic LHRH factor	AK004986|Nelf|56876|nasal embryonic LHRH factor	AK041478|Nelf|56876|nasal embryonic LHRH factor	AK158803|Nelf|56876|nasal embryonic LHRH factor	AF266508|Nelf|56876|nasal embryonic LHRH factor	AK019560|Nelf|56876|nasal embryonic LHRH factor	BC006642|Nelf|56876|nasal embryonic LHRH factor	AK053402|Nelf|56876|nasal embryonic LHRH factor	AK165300|Nelf|56876|nasal embryonic LHRH factor
mm9_v1_chr4_-_151235861_151235879	0.277557	CAGCAGG	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chrX_-_147451785_147451868	0.27717	CAGCAGG	BC079653|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	BC057033|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	BC020354|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	NM_001168600|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like	NM_198110|Gnl3l|237107|guanine nucleotide binding protein-like 3 (nucleolar)-like
mm9_v1_chr6_-_115944822_115945034	0.277089	CAGCAGG	AY688678|Plxnd1|67784|plexin D1	AK147513|Plxnd1|67784|plexin D1	NM_026376|Plxnd1|67784|plexin D1
mm9_v1_chr7_-_17200285_17200343	0.27638	CAGCAGG	BC139459|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	BC139461|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147326|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147688|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	NM_172739|Grlf1|232906|glucocorticoid receptor DNA binding factor 1
mm9_v1_chr11_+_78001871_78001989	0.276262	CAGCAGG	NM_001159482|Rab34|19376|RAB34, member of RAS oncogene family	AF327929|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr11_-_102157904_102158007	0.274911	CAGCAGG	NM_001098836|Atxn7l3|217218|ataxin 7-like 3	NM_001098837|Atxn7l3|217218|ataxin 7-like 3	AK090368|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr10_+_127848671_127848731	0.27437	CAGCAGG	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr4_+_43591606_43591606	0.273804	CAGCAGG	NM_172866|Rgp1|242406|RGP1 retrograde golgi transport homolog (S. cerevisiae)
mm9_v1_chr10_-_80039973_80040065	0.27368	CAGCAGG	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chr17_+_29686744_29686746	0.273659	CAGCAGG	BC045600|Tbc1d22b|381085|TBC1 domain family, member 22B	NM_198647|Tbc1d22b|381085|TBC1 domain family, member 22B
mm9_v1_chr13_-_49311308_49311436	0.271967	CAGCAGG	BC147073|1110007C09Rik|68480|RIKEN cDNA 1110007C09 gene	BC147074|1110007C09Rik|68480|RIKEN cDNA 1110007C09 gene	AK154517|1110007C09Rik|68480|RIKEN cDNA 1110007C09 gene	AK003526|1110007C09Rik|68480|RIKEN cDNA 1110007C09 gene	NM_026738|1110007C09Rik|68480|RIKEN cDNA 1110007C09 gene
mm9_v1_chr11_+_68912444_68912492	0.27143	CAGCAGG	NM_011065|Per1|18626|period homolog 1 (Drosophila)	BC091645|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr5_+_124423632_124423689	0.269378	CAGCAGG	NM_145070|Hip1r|29816|huntingtin interacting protein 1 related	BC065101|Hip1r|29816|huntingtin interacting protein 1 related	AK014542|Hip1r|29816|huntingtin interacting protein 1 related	AK129182|Hip1r|29816|huntingtin interacting protein 1 related
mm9_v1_chr6_+_86145220_86145449	0.268286	CAGCAGG	AK010785|Tgfa|21802|transforming growth factor alpha	AK165017|Tgfa|21802|transforming growth factor alpha	NM_031199|Tgfa|21802|transforming growth factor alpha	AK166321|Tgfa|21802|transforming growth factor alpha	U65016|Tgfa|21802|transforming growth factor alpha	BC132185|Tgfa|21802|transforming growth factor alpha	BC132211|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr16_+_95923988_95924060	0.268192	CAGCAGG	NM_011809|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK038348|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr15_+_58720783_58720964	0.267746	CAGCAGG	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr17_-_26078825_26078928	0.267264	CAGCAGG	AK155173|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK016852|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK137390|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK033349|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK170431|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AB008895|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	BC014287|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	NM_011822|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK163680|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK169284|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q
mm9_v1_chr18_+_37164856_37165092	0.26581	CAGCAGG	BC079625|Pcdha10|12943|protocadherin alpha 10	AY013757|Pcdha10|12943|protocadherin alpha 10	NM_009961|Pcdha10|12943|protocadherin alpha 10	AB008178|Pcdha10|12943|protocadherin alpha 10
mm9_v1_chr13_+_58907953_58907974	0.26476	CAGCAGG	NM_008745|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr2_+_127073631_127073743	0.264668	CAGCAGG	AK165880|Tmem127|69470|transmembrane protein 127	AK030324|Tmem127|69470|transmembrane protein 127	BC049832|Tmem127|69470|transmembrane protein 127	NM_175145|Tmem127|69470|transmembrane protein 127	AK050216|Tmem127|69470|transmembrane protein 127
mm9_v1_chr2_-_91790504_91790533	0.262833	CAGCAGG	AK087503|Dgkz|104418|diacylglycerol kinase zeta	NM_001166597|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr19_-_34952377_34952406	0.260526	CAGCAGG	AF200357|Pank1|75735|pantothenate kinase 1	AK050222|Pank1|75735|pantothenate kinase 1	NM_023792|Pank1|75735|pantothenate kinase 1
mm9_v1_chr19_+_46647844_46647860	0.260435	CAGCAGG	AK162407|Sfxn2|94279|sideroflexin 2	NM_053196|Sfxn2|94279|sideroflexin 2	AK034875|Sfxn2|94279|sideroflexin 2	BC019808|Sfxn2|94279|sideroflexin 2
mm9_v1_chr15_-_63891810_63892112	0.260419	CAGCAGG	AK075613|Fam49b|223601|family with sequence similarity 49, member B	AK043641|Fam49b|223601|family with sequence similarity 49, member B	AK028062|Fam49b|223601|family with sequence similarity 49, member B	NM_144846|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr17_-_25377052_25377092	0.25947	CAGCAGG	BC055872|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	NM_172529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	BC023869|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK044021|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK078230|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AY465529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit
mm9_v1_chr2_+_121274946_121274963	0.259043	CAGCAGG	NM_011354|Serf2|378702|small EDRK-rich factor 2
mm9_v1_chr1_+_74901489_74901677	0.258815	CAGCAGG	NM_009872|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100712|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC103550|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100714|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100715|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)
mm9_v1_chr8_-_81818792_81818859	0.258346	CAGCAGG	AK050255|Mmaa|109136|methylmalonic aciduria (cobalamin deficiency) type A	NM_133823|Mmaa|109136|methylmalonic aciduria (cobalamin deficiency) type A
mm9_v1_chr1_-_36502079_36502124	0.256949	CAGCAGG	AK142024|Lman2l|214895|lectin, mannose-binding 2-like	BC046969|Lman2l|214895|lectin, mannose-binding 2-like	NM_001013374|Lman2l|214895|lectin, mannose-binding 2-like	BC027226|Lman2l|214895|lectin, mannose-binding 2-like	AK158015|Lman2l|214895|lectin, mannose-binding 2-like
mm9_v1_chr8_+_87560809_87560830	0.256787	CAGCAGG	AK154985|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	AK155760|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	NM_145390|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr6_+_72297294_72297363	0.256334	CAGCAGG	AK085662|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	NM_026696|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC064080|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK013079|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC066053|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117811|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117812|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK002701|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene
mm9_v1_chr17_+_13897509_13897625	0.254273	CAGCAGG	NM_010806|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AF172447|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AK166398|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
mm9_v1_chr13_+_54890763_54890824	0.253868	CAGCAGG	AK166272|Tspan17|74257|tetraspanin 17	NM_028841|Tspan17|74257|tetraspanin 17	AK171691|Tspan17|74257|tetraspanin 17	BC010346|Tspan17|74257|tetraspanin 17	AK008761|Tspan17|74257|tetraspanin 17
mm9_v1_chr2_+_125498825_125498913	0.253075	CAGCAGG	AK002559|Eid1|58521|EP300 interacting inhibitor of differentiation 1	NM_025613|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK011293|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK012453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC010712|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK077783|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK017543|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK169604|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK005258|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AL357453|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078402|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078409|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK148555|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK014440|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AF509968|Eid1|58521|EP300 interacting inhibitor of differentiation 1	AK078826|Eid1|58521|EP300 interacting inhibitor of differentiation 1	BC069897|Eid1|58521|EP300 interacting inhibitor of differentiation 1
mm9_v1_chr7_+_88138537_88138597	0.252804	CAGCAGG	AK042675|Zfp592|233410|zinc finger protein 592	NM_178707|Zfp592|233410|zinc finger protein 592	AK143618|Zfp592|233410|zinc finger protein 592	AK129089|Zfp592|233410|zinc finger protein 592
mm9_v1_chr1_+_36568707_36568722	0.252164	CAGCAGG	NM_001039551|Cnnm3|94218|cyclin M3	NM_053186|Cnnm3|94218|cyclin M3
mm9_v1_chr4_-_151363053_151363130	0.25152	CAGCAGG	AK008225|Thap3|69876|THAP domain containing, apoptosis associated protein 3	AK038184|Thap3|69876|THAP domain containing, apoptosis associated protein 3	BC094395|Thap3|69876|THAP domain containing, apoptosis associated protein 3	BC059091|Thap3|69876|THAP domain containing, apoptosis associated protein 3	BC115485|Thap3|69876|THAP domain containing, apoptosis associated protein 3	BC115486|Thap3|69876|THAP domain containing, apoptosis associated protein 3	NM_001145929|Thap3|69876|THAP domain containing, apoptosis associated protein 3	NM_175152|Thap3|69876|THAP domain containing, apoptosis associated protein 3	AK050740|Thap3|69876|THAP domain containing, apoptosis associated protein 3
mm9_v1_chr16_+_18052952_18053027	0.251294	CAGCAGG	AK019346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	NM_010047|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK160342|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr2_-_165113250_165113360	0.249545	CAGCAGG	AK170715|Slc35c2|228875|solute carrier family 35, member C2	AK155539|Slc35c2|228875|solute carrier family 35, member C2	BC094025|Slc35c2|228875|solute carrier family 35, member C2	AK053180|Slc35c2|228875|solute carrier family 35, member C2	AK160899|Slc35c2|228875|solute carrier family 35, member C2	BC018327|Slc35c2|228875|solute carrier family 35, member C2	NM_144893|Slc35c2|228875|solute carrier family 35, member C2	AK158331|Slc35c2|228875|solute carrier family 35, member C2
mm9_v1_chr10_+_74779687_74779852	0.249279	CAGCAGG	NM_009630|Adora2a|11540|adenosine A2a receptor
mm9_v1_chr6_+_108733041_108733073	0.247639	CAGCAGG	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr9_-_108208272_108208302	0.244384	CAGCAGG	BC019397|Tcta|102791|T-cell leukemia translocation altered gene	NM_133986|Tcta|102791|T-cell leukemia translocation altered gene
mm9_v1_chr6_+_47870566_47870709	0.24374	CAGCAGG	NM_001145881|Zfp212|232784|Zinc finger protein 212	NM_145576|Zfp212|232784|Zinc finger protein 212	BC088737|Zfp212|232784|Zinc finger protein 212	BC006693|Zfp212|232784|Zinc finger protein 212	AK129476|Zfp212|232784|Zinc finger protein 212
mm9_v1_chr2_+_31101302_31101442	0.243665	CAGCAGG	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr13_+_54676356_54676474	0.243085	CAGCAGG	NM_019968|Arl10|56795|ADP-ribosylation factor-like 10	AK154684|Arl10|56795|ADP-ribosylation factor-like 10	AF205936|Arl10|56795|ADP-ribosylation factor-like 10	BC115498|Arl10|56795|ADP-ribosylation factor-like 10
mm9_v1_chr4_-_41516463_41516600	0.242263	CAGCAGG	BC147810|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147808|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147834|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147836|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172167|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172173|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK009522|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK134737|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_001159583|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_027993|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene
mm9_v1_chr4_+_130219255_130219279	0.239922	CAGCAGG	AK162742|Pum1|80912|pumilio 1 (Drosophila)	NM_001159603|Pum1|80912|pumilio 1 (Drosophila)	NM_001159604|Pum1|80912|pumilio 1 (Drosophila)	NM_001159605|Pum1|80912|pumilio 1 (Drosophila)	NM_001159606|Pum1|80912|pumilio 1 (Drosophila)	NM_030722|Pum1|80912|pumilio 1 (Drosophila)	AK141921|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr2_+_178149238_178149258	0.237386	CAGCAGG	AK155442|9030418K01Rik|71532|RIKEN cDNA 9030418K01 gene	NM_001081289|9030418K01Rik|71532|RIKEN cDNA 9030418K01 gene
mm9_v1_chr16_+_16983461_16983497	0.23738	CAGCAGG	AK048127|Mapk1|26413|mitogen-activated protein kinase 1	NM_001038663|Mapk1|26413|mitogen-activated protein kinase 1	NM_011949|Mapk1|26413|mitogen-activated protein kinase 1	AK132241|Mapk1|26413|mitogen-activated protein kinase 1	AK148853|Mapk1|26413|mitogen-activated protein kinase 1	AK087925|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr12_+_81793587_81793638	0.236012	CAGCAGG	NM_001177503|3830431G21Rik|217682|RIKEN cDNA 3830431G21 gene	AK028383|3830431G21Rik|217682|RIKEN cDNA 3830431G21 gene
mm9_v1_chr2_-_37502738_37502804	0.233254	CAGCAGG	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr2_-_7317513_7317626	0.2313	CAGCAGG	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr8_-_27104573_27104612	0.231007	CAGCAGG	BC027296|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK015374|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK032677|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK043620|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK170994|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	NM_029037|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK160873|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK036348|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK138952|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene
mm9_v1_chr15_+_88692581_88692634	0.230002	CAGCAGG	AK168014|Pim3|223775|proviral integration site 3	BC017621|Pim3|223775|proviral integration site 3	NM_145478|Pim3|223775|proviral integration site 3
mm9_v1_chr11_-_102017662_102017746	0.228619	CAGCAGG	AK012106|Tmem101|76547|transmembrane protein 101	AK041154|Tmem101|76547|transmembrane protein 101	BC011109|Tmem101|76547|transmembrane protein 101	AK049378|Tmem101|76547|transmembrane protein 101	AK140260|Tmem101|76547|transmembrane protein 101	NM_029649|Tmem101|76547|transmembrane protein 101
mm9_v1_chr2_-_32286633_32286688	0.226357	CAGCAGG	BC066998|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164358|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr8_+_87561055_87561132	0.225228	CAGCAGG	NM_001122843|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	BC003275|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr15_+_102289600_102289666	0.224748	CAGCAGG	NM_001170911|Prr13|66151|proline rich 13	NM_025385|Prr13|66151|proline rich 13	AK003850|Prr13|66151|proline rich 13	AK002430|Prr13|66151|proline rich 13	AK008894|Prr13|66151|proline rich 13	AK154583|Prr13|66151|proline rich 13	BC016234|Prr13|66151|proline rich 13	AK181585|Prr13|66151|proline rich 13
mm9_v1_chr9_+_88442857_88443020	0.2213	CAGCAGG	AK015179|Zfp949|71640|zinc finger protein 949	NM_001142943|Zfp949|71640|zinc finger protein 949	NM_001163061|Zfp949|71640|zinc finger protein 949	AK161903|Zfp949|71640|zinc finger protein 949	BC141009|Zfp949|71640|zinc finger protein 949	BC141010|Zfp949|71640|zinc finger protein 949
mm9_v1_chr19_+_10278684_10278739	0.220587	CAGCAGG	NM_026919|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK145833|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK007351|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	BC085316|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene
mm9_v1_chr19_+_54018795_54018795	0.218024	CAGCAGG	BC083060|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)	NM_001168505|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)
mm9_v1_chr7_-_112959591_112959616	0.216989	CAGCAGG	NM_025301|Mrpl17|27397|mitochondrial ribosomal protein L17
mm9_v1_chr11_+_101107635_101107647	0.215586	CAGCAGG	NM_019444|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr15_+_76307820_76307891	0.215119	CAGCAGG	AK082507|Hsf1|15499|heat shock factor 1	AK089144|Hsf1|15499|heat shock factor 1	BC094064|Hsf1|15499|heat shock factor 1	BC013716|Hsf1|15499|heat shock factor 1	NM_008296|Hsf1|15499|heat shock factor 1	AK075651|Hsf1|15499|heat shock factor 1	X61753|Hsf1|15499|heat shock factor 1
mm9_v1_chr10_-_76424664_76424695	0.213668	CAGCAGG	NM_021568|Pcbp3|59093|poly(rC) binding protein 3
mm9_v1_chr1_+_193730645_193730708	0.212434	CAGCAGG	AK145100|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	NM_009579|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	BC052166|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1
mm9_v1_chr2_-_66278870_66278908	0.211974	CAGCAGG	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr12_+_88288287_88288431	0.211386	CAGCAGG	NM_173735|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK165964|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK154476|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	BC026384|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK122546|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene	AK160643|2310044G17Rik|217732|RIKEN cDNA 2310044G17 gene
mm9_v1_chrX_+_100551808_100551914	0.211244	CAGCAGG	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr17_+_33980030_33980035	0.211148	CAGCAGG	AK078151|Cd320|54219|CD320 antigen	AK088189|Cd320|54219|CD320 antigen	NM_019421|Cd320|54219|CD320 antigen
mm9_v1_chr18_+_75979831_75979868	0.210555	CAGCAGG	BC070424|Zbtb7c|207259|zinc finger and BTB domain containing 7C	NM_145356|Zbtb7c|207259|zinc finger and BTB domain containing 7C	AK045522|Zbtb7c|207259|zinc finger and BTB domain containing 7C
mm9_v1_chr4_-_130037145_130037207	0.210033	CAGCAGG	AJ272345|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK050342|Zcchc17|619605|zinc finger, CCHC domain containing 17	BC049231|Zcchc17|619605|zinc finger, CCHC domain containing 17	AY253297|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK161588|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK152289|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK168912|Zcchc17|619605|zinc finger, CCHC domain containing 17	NM_153160|Zcchc17|619605|zinc finger, CCHC domain containing 17	AK012953|Zcchc17|619605|zinc finger, CCHC domain containing 17
mm9_v1_chr1_-_136131981_136132033	0.209143	CAGCAGG	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr7_-_148067703_148067786	0.208487	CAGCAGG	BC025878|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AK075861|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	FJ621493|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	EU886466|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	AF299339|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001127351|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_001177804|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)
mm9_v1_chr7_+_63305516_63305584	0.207881	CAGCAGG	NM_010418|Herc2|15204|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm9_v1_chr19_+_32832002_32832163	0.206097	CAGCAGG	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr4_-_115817140_115817220	0.20568	CAGCAGG	BC147058|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147059|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147737|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147750|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	AK013564|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	NM_026547|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene
mm9_v1_chr17_+_36054140_36054142	0.204561	CAGCAGG	BC052059|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	NM_001163818|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AJ504718|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10
mm9_v1_chr13_+_5860701_5860744	0.202908	CAGCAGG	NM_011803|Klf6|23849|Kruppel-like factor 6	AY027436|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr10_+_57718246_57718291	0.202446	CAGCAGG	AK008992|Gcc2|70297|GRIP and coiled-coil domain containing 2	AK011206|Gcc2|70297|GRIP and coiled-coil domain containing 2	AK045701|Gcc2|70297|GRIP and coiled-coil domain containing 2	NM_027375|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC139007|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC145495|Gcc2|70297|GRIP and coiled-coil domain containing 2	BC027339|Gcc2|70297|GRIP and coiled-coil domain containing 2
mm9_v1_chr15_+_79059603_79059603	0.20138	CAGCAGG	NM_008837|Pick1|18693|protein interacting with C kinase 1
mm9_v1_chr11_-_45758413_45758456	0.201055	CAGCAGG	AF514309|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	BC094286|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK143661|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK082292|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	NM_028185|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11
mm9_v1_chr1_-_17087821_17087878	0.201014	CAGCAGG	AB024445|Jph1|57339|junctophilin 1	NM_020604|Jph1|57339|junctophilin 1
mm9_v1_chr19_+_8692485_8692668	0.200271	CAGCAGG	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr5_+_148768875_148768913	0.198997	CAGCAGG	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr14_+_56443631_56443725	0.198904	CAGCAGG	NM_001168346|Nfatc4|73181|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	NM_023699|Nfatc4|73181|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4
mm9_v1_chr4_-_119165183_119165252	0.197133	CAGCAGG	BC057371|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK163360|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK047164|Rimkla|194237|ribosomal modification protein rimK-like family member A	NM_177572|Rimkla|194237|ribosomal modification protein rimK-like family member A
mm9_v1_chr5_+_114581164_114581232	0.197076	CAGCAGG	NM_011677|Ung|22256|uracil DNA glycosylase	X99018|Ung|22256|uracil DNA glycosylase	U55041|Ung|22256|uracil DNA glycosylase	AK168709|Ung|22256|uracil DNA glycosylase	AK168785|Ung|22256|uracil DNA glycosylase	BC052853|Ung|22256|uracil DNA glycosylase
mm9_v1_chr19_-_4175478_4175577	0.19705	CAGCAGG	NM_134148|Carns1|107239|carnosine synthase 1
mm9_v1_chr19_-_46470175_46470258	0.195944	CAGCAGG	BC007131|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK010632|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AB010297|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	NM_016860|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK019518|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK168889|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK088062|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK167450|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK162248|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr10_+_126703317_126703496	0.194766	CAGCAGG	NM_001190453|Dctn2|69654|dynactin 2	NM_001190454|Dctn2|69654|dynactin 2	NM_027151|Dctn2|69654|dynactin 2	AK081785|Dctn2|69654|dynactin 2	AK054390|Dctn2|69654|dynactin 2	AK164021|Dctn2|69654|dynactin 2	AK144464|Dctn2|69654|dynactin 2	AK144505|Dctn2|69654|dynactin 2	BC004613|Dctn2|69654|dynactin 2
mm9_v1_chr12_+_104626888_104626975	0.194529	CAGCAGG	NM_026580|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK076336|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	NM_001177841|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC049551|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK016449|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK160505|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK019830|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006346|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006469|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006054|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC052409|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2
mm9_v1_chr2_+_71711274_71711402	0.194104	CAGCAGG	AK046805|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK153649|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	NM_172665|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK163553|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC027196|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK028017|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK085215|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC025480|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1
mm9_v1_chr2_-_154233754_154233847	0.193329	CAGCAGG	BC018546|Snta1|20648|syntrophin, acidic 1	U00677|Snta1|20648|syntrophin, acidic 1	AK137379|Snta1|20648|syntrophin, acidic 1	NM_009228|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr17_+_73457324_73457400	0.192774	CAGCAGG	NM_001081071|Lclat1|225010|lysocardiolipin acyltransferase 1	NM_001177967|Lclat1|225010|lysocardiolipin acyltransferase 1	NM_001177968|Lclat1|225010|lysocardiolipin acyltransferase 1	AK144580|Lclat1|225010|lysocardiolipin acyltransferase 1	BC147499|Lclat1|225010|lysocardiolipin acyltransferase 1	BC150884|Lclat1|225010|lysocardiolipin acyltransferase 1	BC158076|Lclat1|225010|lysocardiolipin acyltransferase 1	BC158079|Lclat1|225010|lysocardiolipin acyltransferase 1
mm9_v1_chr12_+_29360060_29360071	0.192407	CAGCAGG	BC005695|Adi1|104923|acireductone dioxygenase 1	NM_134052|Adi1|104923|acireductone dioxygenase 1
mm9_v1_chr6_-_91757386_91757427	0.192205	CAGCAGG	NM_001159507|Grip2|243547|glutamate receptor interacting protein 2
mm9_v1_chr2_+_172825609_172825642	0.190689	CAGCAGG	BC060072|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK079383|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	NM_175112|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr1_-_178143971_178144072	0.189205	CAGCAGG	AK082725|Pld5|319455|phospholipase D family, member 5	NM_001195816|Pld5|319455|phospholipase D family, member 5
mm9_v1_chr11_+_75813413_75813528	0.188689	CAGCAGG	NM_198637|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene	BC049758|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene	AK006044|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene	AK132806|1700016K19Rik|74230|RIKEN cDNA 1700016K19 gene
mm9_v1_chr6_+_134780207_134780442	0.187697	CAGCAGG	AK045467|Crebl2|232430|cAMP responsive element binding protein-like 2	NM_177687|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109358|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109359|Crebl2|232430|cAMP responsive element binding protein-like 2	AK195782|Crebl2|232430|cAMP responsive element binding protein-like 2
mm9_v1_chr5_+_35104373_35104397	0.186246	CAGCAGG	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr11_-_106474237_106474312	0.18568	CAGCAGG	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr10_-_80119815_80119815	0.185505	CAGCAGG	NM_145361|Btbd2|208198|BTB (POZ) domain containing 2
mm9_v1_chr5_+_29895742_29895846	0.185441	CAGCAGG	AK046056|Ube3c|100763|ubiquitin protein ligase E3C	NM_133907|Ube3c|100763|ubiquitin protein ligase E3C	AK122187|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr5_-_141124884_141125029	0.18534	CAGCAGG	AK052340|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC059083|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC062917|Ttyh3|78339|tweety homolog 3 (Drosophila)	NM_175274|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr6_+_28430311_28430460	0.18388	CAGCAGG	AK133837|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	NM_019776|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK167576|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK159837|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK088028|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK161591|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AB021491|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK034914|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK162432|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	BC007126|Snd1|56463|staphylococcal nuclease and tudor domain containing 1
mm9_v1_chr7_-_85722668_85722860	0.183596	CAGCAGG	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr4_-_135543058_135543193	0.183591	CAGCAGG	BC052695|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AF400670|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK050261|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	NM_025411|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene	AK004208|1110049F12Rik|66193|RIKEN cDNA 1110049F12 gene
mm9_v1_chr8_-_23916037_23916141	0.182572	CAGCAGG	BC030484|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	BC027301|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK017991|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK134634|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK082988|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK080668|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK081220|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AY039763|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK077365|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_001122820|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_029505|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit
mm9_v1_chr3_-_108248053_108248111	0.182374	CAGCAGG	AK077309|Sars|20226|seryl-aminoacyl-tRNA synthetase	BC008612|Sars|20226|seryl-aminoacyl-tRNA synthetase	BC031932|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK147825|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK082793|Sars|20226|seryl-aminoacyl-tRNA synthetase	NM_011319|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK028358|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK075827|Sars|20226|seryl-aminoacyl-tRNA synthetase
mm9_v1_chr1_-_186706866_186706914	0.181579	CAGCAGG	AK052654|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene	AK084264|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene	AK081755|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene	AK087640|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene	BC116951|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene	BC116953|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene	NM_178692|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene
mm9_v1_chr2_-_180008165_180008177	0.180536	CAGCAGG	AK050121|Cables2|252966|CDK5 and Abl enzyme substrate 2	NM_145851|Cables2|252966|CDK5 and Abl enzyme substrate 2
mm9_v1_chr4_-_150418704_150418793	0.179991	CAGCAGG	NM_011067|Per3|18628|period homolog 3 (Drosophila)	AK166514|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr12_-_88541151_88541189	0.179134	CAGCAGG	AK147378|Tmed8|382620|transmembrane emp24 domain containing 8	NM_001033475|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr1_-_65003291_65003407	0.176216	CAGCAGG	AK034959|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	BC063098|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	NM_001039493|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3
mm9_v1_chr11_-_74981653_74981653	0.175914	CAGCAGG	NM_001098203|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chr4_-_41450064_41450152	0.175704	CAGCAGG	BC137640|AI464131|329828|expressed sequence AI464131	BC140956|AI464131|329828|expressed sequence AI464131	AK173117|AI464131|329828|expressed sequence AI464131	NM_001085515|AI464131|329828|expressed sequence AI464131
mm9_v1_chr6_-_144997311_144997331	0.174985	CAGCAGG	AK036309|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_001024468|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr11_+_75546384_75546451	0.174048	CAGCAGG	NM_009536|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	BC058686|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK169812|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK075995|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr11_-_61393108_61393198	0.173022	CAGCAGG	AK195274|Epn2|13855|epsin 2	AK139793|Epn2|13855|epsin 2	BC039138|Epn2|13855|epsin 2	NM_010148|Epn2|13855|epsin 2	AK036331|Epn2|13855|epsin 2	AK173093|Epn2|13855|epsin 2	AK139234|Epn2|13855|epsin 2	AK160782|Epn2|13855|epsin 2
mm9_v1_chr11_+_97660946_97661134	0.17273	CAGCAGG	X96702|Lasp1|16796|LIM and SH3 protein 1	AK148858|Lasp1|16796|LIM and SH3 protein 1	AK034404|Lasp1|16796|LIM and SH3 protein 1	AK049199|Lasp1|16796|LIM and SH3 protein 1	AK078445|Lasp1|16796|LIM and SH3 protein 1	AK168521|Lasp1|16796|LIM and SH3 protein 1	AK169381|Lasp1|16796|LIM and SH3 protein 1	NM_010688|Lasp1|16796|LIM and SH3 protein 1	AK154656|Lasp1|16796|LIM and SH3 protein 1	BC010840|Lasp1|16796|LIM and SH3 protein 1	X96973|Lasp1|16796|LIM and SH3 protein 1	CT010288|Lasp1|16796|LIM and SH3 protein 1
mm9_v1_chr17_-_33897428_33897430	0.172117	CAGCAGG	NM_008997|Rab11b|19326|RAB11B, member RAS oncogene family
mm9_v1_chr6_+_113392563_113392636	0.171956	CAGCAGG	AK141417|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK043698|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK151252|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK170345|Jagn1|67767|jagunal homolog 1 (Drosophila)	BC011296|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK020149|Jagn1|67767|jagunal homolog 1 (Drosophila)	BC025910|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK034671|Jagn1|67767|jagunal homolog 1 (Drosophila)	BC037019|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK017953|Jagn1|67767|jagunal homolog 1 (Drosophila)	NM_026365|Jagn1|67767|jagunal homolog 1 (Drosophila)	AK003673|Jagn1|67767|jagunal homolog 1 (Drosophila)
mm9_v1_chr4_-_57314708_57314708	0.171429	CAGCAGG	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr5_+_144383313_144383461	0.170071	CAGCAGG	NM_011182|Cyth3|19159|cytohesin 3	AK142407|Cyth3|19159|cytohesin 3	AK220565|Cyth3|19159|cytohesin 3	AK159229|Cyth3|19159|cytohesin 3	BC035296|Cyth3|19159|cytohesin 3	AK036191|Cyth3|19159|cytohesin 3	AK168566|Cyth3|19159|cytohesin 3	AF084221|Cyth3|19159|cytohesin 3	AB013470|Cyth3|19159|cytohesin 3
mm9_v1_chrX_+_38754480_38754557	0.169909	CAGCAGG	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr1_+_183081058_183081062	0.169403	CAGCAGG	NM_030131|Cnih4|98417|cornichon homolog 4 (Drosophila)
mm9_v1_chr5_+_23870625_23870649	0.168334	CAGCAGG	AK158106|Nos3|18127|nitric oxide synthase 3, endothelial cell	AK077896|Nos3|18127|nitric oxide synthase 3, endothelial cell	NM_008713|Nos3|18127|nitric oxide synthase 3, endothelial cell	U53142|Nos3|18127|nitric oxide synthase 3, endothelial cell	BC052636|Nos3|18127|nitric oxide synthase 3, endothelial cell
mm9_v1_chr3_+_88425294_88425344	0.168177	CAGCAGG	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr5_-_23122181_23122418	0.16792	CAGCAGG	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr12_+_88019649_88019727	0.167792	CAGCAGG	AB284948|Vash1|238328|vasohibin 1	AK090166|Vash1|238328|vasohibin 1	NM_177354|Vash1|238328|vasohibin 1	AK086583|Vash1|238328|vasohibin 1
mm9_v1_chr7_-_134351860_134352145	0.167645	CAGCAGG	AK047320|Tbc1d10b|68449|TBC1 domain family, member 10b	AK047327|Tbc1d10b|68449|TBC1 domain family, member 10b	NM_144522|Tbc1d10b|68449|TBC1 domain family, member 10b
mm9_v1_chr14_-_65716932_65716942	0.166788	CAGCAGG	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr2_+_29475234_29475393	0.165779	CAGCAGG	AK147468|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147470|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039086|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039087|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_054050|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147696|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147506|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AF348669|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr2_+_91570249_91570297	0.165212	CAGCAGG	NM_001080754|Ambra1|228361|autophagy/beclin 1 regulator 1	NM_172669|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr11_-_119409041_119409133	0.164416	CAGCAGG	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chrX_-_73119905_73119926	0.162561	CAGCAGG	NM_145629|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr17_-_27760308_27760448	0.161536	CAGCAGG	AF264064|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	NM_019837|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC046805|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC016534|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm9_v1_chr9_-_44096170_44096326	0.161495	CAGCAGG	AY040865|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF411084|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AJ426047|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF425077|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	BC016200|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AK043147|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	NM_138955|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4
mm9_v1_chr9_+_65062496_65062582	0.160854	CAGCAGG	AK133475|Parp16|214424|poly (ADP-ribose) polymerase family, member 16	NM_177460|Parp16|214424|poly (ADP-ribose) polymerase family, member 16	BC055447|Parp16|214424|poly (ADP-ribose) polymerase family, member 16	AK169866|Parp16|214424|poly (ADP-ribose) polymerase family, member 16
mm9_v1_chr6_+_48487567_48487613	0.160656	CAGCAGG	NM_133764|Atp6v0e2|76252|ATPase, H+ transporting, lysosomal V0 subunit E2	BC010790|Atp6v0e2|76252|ATPase, H+ transporting, lysosomal V0 subunit E2
mm9_v1_chr16_+_8637799_8637865	0.16057	CAGCAGG	AF043514|Pmm2|54128|phosphomannomutase 2	NM_016881|Pmm2|54128|phosphomannomutase 2	AK012683|Pmm2|54128|phosphomannomutase 2	AK005074|Pmm2|54128|phosphomannomutase 2	AK002858|Pmm2|54128|phosphomannomutase 2	AK162626|Pmm2|54128|phosphomannomutase 2	BC037101|Pmm2|54128|phosphomannomutase 2	BC094448|Pmm2|54128|phosphomannomutase 2	AK149116|Pmm2|54128|phosphomannomutase 2	AK003334|Pmm2|54128|phosphomannomutase 2	AK134850|Pmm2|54128|phosphomannomutase 2	AK145402|Pmm2|54128|phosphomannomutase 2	BC046325|Pmm2|54128|phosphomannomutase 2
mm9_v1_chr13_+_97312572_97312733	0.159401	CAGCAGG	AK030305|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	NM_001164222|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	NM_023420|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK047100|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK080958|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK038061|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK163624|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK012989|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK038803|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	BC016197|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm9_v1_chr15_+_54577256_54577521	0.15922	CAGCAGG	AK081944|Nov|18133|nephroblastoma overexpressed gene	AK081310|Nov|18133|nephroblastoma overexpressed gene	AK136407|Nov|18133|nephroblastoma overexpressed gene	AK155048|Nov|18133|nephroblastoma overexpressed gene	BC003774|Nov|18133|nephroblastoma overexpressed gene	NM_010930|Nov|18133|nephroblastoma overexpressed gene	X96585|Nov|18133|nephroblastoma overexpressed gene	AK039481|Nov|18133|nephroblastoma overexpressed gene	Y09257|Nov|18133|nephroblastoma overexpressed gene
mm9_v1_chr11_-_95375878_95375924	0.157878	CAGCAGG	AK158760|Nxph3|104079|neurexophilin 3	NM_130858|Nxph3|104079|neurexophilin 3
mm9_v1_chr11_-_78311204_78311255	0.157071	CAGCAGG	BC058534|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	BC080850|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_001168521|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_172795|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1
mm9_v1_chr10_-_33344405_33344571	0.157044	CAGCAGG	AK039308|Clvs2|215890|clavesin 2	NM_175448|Clvs2|215890|clavesin 2	BC058539|Clvs2|215890|clavesin 2	AK163214|Clvs2|215890|clavesin 2	AK053797|Clvs2|215890|clavesin 2	AK139868|Clvs2|215890|clavesin 2	AK139409|Clvs2|215890|clavesin 2	AK169009|Clvs2|215890|clavesin 2
mm9_v1_chrX_-_45561726_45561881	0.156742	CAGCAGG	BC042618|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK035745|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK079248|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032252|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032233|Zdhhc9|208884|zinc finger, DHHC domain containing 9	NM_172465|Zdhhc9|208884|zinc finger, DHHC domain containing 9
mm9_v1_chr19_-_6996189_6996331	0.156553	CAGCAGG	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr10_+_79516232_79516445	0.155815	CAGCAGG	D87896|Gpx4|625249|glutathione peroxidase 4	NM_008162|Gpx4|625249|glutathione peroxidase 4	AF045768|Gpx4|625249|glutathione peroxidase 4	AK167881|Gpx4|625249|glutathione peroxidase 4	AK006441|Gpx4|625249|glutathione peroxidase 4	AK160389|Gpx4|625249|glutathione peroxidase 4	AK168027|Gpx4|625249|glutathione peroxidase 4	AF045769|Gpx4|625249|glutathione peroxidase 4	AK160509|Gpx4|625249|glutathione peroxidase 4	BC083137|Gpx4|625249|glutathione peroxidase 4
mm9_v1_chrX_+_68468175_68468259	0.155771	CAGCAGG	AK149997|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164191|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164192|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164193|Mtm1|17772|X-linked myotubular myopathy gene 1	AK171475|Mtm1|17772|X-linked myotubular myopathy gene 1	AK031794|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166452|Mtm1|17772|X-linked myotubular myopathy gene 1	BC090984|Mtm1|17772|X-linked myotubular myopathy gene 1	BC051022|Mtm1|17772|X-linked myotubular myopathy gene 1	AK032870|Mtm1|17772|X-linked myotubular myopathy gene 1	BC066847|Mtm1|17772|X-linked myotubular myopathy gene 1	AF073996|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_019926|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166759|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr10_-_88906629_88906731	0.155595	CAGCAGG	AK170750|Gas2l3|237436|growth arrest-specific 2 like 3	AK170634|Gas2l3|237436|growth arrest-specific 2 like 3	AK164505|Gas2l3|237436|growth arrest-specific 2 like 3	NM_001033331|Gas2l3|237436|growth arrest-specific 2 like 3	NM_001079876|Gas2l3|237436|growth arrest-specific 2 like 3	AK136054|Gas2l3|237436|growth arrest-specific 2 like 3
mm9_v1_chr18_+_37120093_37120209	0.152583	CAGCAGG	AY013763|Pcdha5|12941|protocadherin alpha 5	NM_009959|Pcdha5|12941|protocadherin alpha 5	AB008181|Pcdha5|12941|protocadherin alpha 5
mm9_v1_chr16_-_28929698_28929810	0.152447	CAGCAGG	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr7_-_147288290_147288306	0.152367	CAGCAGG	BC028662|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK007494|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK042452|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK044731|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK079410|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	NM_026928|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene
mm9_v1_chr2_+_92061718_92061757	0.150799	CAGCAGG	NM_001109690|Phf21a|192285|PHD finger protein 21A	AK137085|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr11_+_59475986_59476013	0.150554	CAGCAGG	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr5_+_135845811_135845865	0.150389	CAGCAGG	AK079400|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	NM_145414|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK156651|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AF412029|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK149521|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5
mm9_v1_chr14_+_18493380_18493473	0.149567	CAGCAGG	AK158826|Thrb|21834|thyroid hormone receptor beta	NM_001113417|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr15_+_41662472_41662583	0.149562	CAGCAGG	NM_001130164|Oxr1|170719|oxidation resistance 1	AK014186|3110047M12Rik|73184|RIKEN cDNA 3110047M12 gene
mm9_v1_chr11_-_61080588_61080704	0.149542	CAGCAGG	BC003797|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	U14390|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK079571|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK079639|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK148462|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK163040|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK169157|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK170251|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	NM_007437|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK086262|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK051219|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK078243|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK170195|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK152156|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK152735|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK152800|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK140932|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK159246|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2
mm9_v1_chr9_+_122026378_122026421	0.14864	CAGCAGG	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr14_+_8650470_8650537	0.147476	CAGCAGG	NM_134080|Flnb|286940|filamin, beta	AK047011|Flnb|286940|filamin, beta
mm9_v1_chr15_-_84818368_84818512	0.146963	CAGCAGG	AK149782|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	NM_001033273|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	AK170532|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene
mm9_v1_chr2_+_163428044_163428072	0.146131	CAGCAGG	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr5_-_141178229_141178331	0.145433	CAGCAGG	AK029333|Iqce|74239|IQ motif containing E	BC059223|Iqce|74239|IQ motif containing E	NM_028833|Iqce|74239|IQ motif containing E
mm9_v1_chr11_-_76322920_76322935	0.143539	CAGCAGG	BC058708|Abr|109934|active BCR-related gene	NM_198018|Abr|109934|active BCR-related gene
mm9_v1_chr15_-_79233664_79233756	0.143532	CAGCAGG	AK048138|Tmem184b|223693|transmembrane protein 184b	AK028196|Tmem184b|223693|transmembrane protein 184b	AK029129|Tmem184b|223693|transmembrane protein 184b	AK170086|Tmem184b|223693|transmembrane protein 184b	AK149366|Tmem184b|223693|transmembrane protein 184b	AK158789|Tmem184b|223693|transmembrane protein 184b	NM_172608|Tmem184b|223693|transmembrane protein 184b
mm9_v1_chr7_+_38968802_38968906	0.143004	CAGCAGG	NM_028166|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK146474|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK005449|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK032342|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	AK032135|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC010476|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC085480|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene	BC092099|1600014C10Rik|72244|RIKEN cDNA 1600014C10 gene
mm9_v1_chr18_-_38094995_38095137	0.141702	CAGCAGG	AK140734|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK220466|Diap1|13367|diaphanous homolog 1 (Drosophila)	NM_007858|Diap1|13367|diaphanous homolog 1 (Drosophila)	U96963|Diap1|13367|diaphanous homolog 1 (Drosophila)	BC070412|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK012707|Diap1|13367|diaphanous homolog 1 (Drosophila)
mm9_v1_chr8_-_75094915_75095130	0.14137	CAGCAGG	BC037511|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152451|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152748|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK035786|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK151539|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	NM_172396|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AF140607|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC055692|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK009731|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK148562|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK149156|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK169625|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK018610|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC060963|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK206814|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene
mm9_v1_chr15_+_89284341_89284359	0.140453	CAGCAGG	NM_021921|Mapk8ip2|60597|mitogen-activated protein kinase 8 interacting protein 2
mm9_v1_chr1_+_89749844_89749886	0.140106	CAGCAGG	NM_177646|Dgkd|227333|diacylglycerol kinase, delta
mm9_v1_chr2_+_17976897_17976897	0.13975	CAGCAGG	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr4_+_140703825_140703842	0.139734	CAGCAGG	NM_172518|Fbxo42|213499|F-box protein 42
mm9_v1_chrX_-_92361778_92361824	0.138783	CAGCAGG	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr8_+_116159485_116159734	0.138295	CAGCAGG	NM_001048143|Mon1b|270096|MON1 homolog b (yeast)	AK157390|Mon1b|270096|MON1 homolog b (yeast)	NM_173015|Mon1b|270096|MON1 homolog b (yeast)	AK030288|Mon1b|270096|MON1 homolog b (yeast)
mm9_v1_chr7_+_133415982_133416132	0.138272	CAGCAGG	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr1_-_107253245_107253286	0.137525	CAGCAGG	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr16_-_21694608_21694737	0.137177	CAGCAGG	AK051892|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK044207|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK053253|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC072629|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC052490|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	NM_001001881|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene
mm9_v1_chr11_-_20012953_20012967	0.137078	CAGCAGG	NM_146243|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr6_-_118089060_118089172	0.136909	CAGCAGG	AK028045|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK145992|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK160867|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK019496|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	NM_030165|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2
mm9_v1_chr9_-_123587923_123587963	0.136503	CAGCAGG	AJ964961|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	BC118933|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	NM_139142|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK160468|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK043297|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK080979|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AK140445|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A	AJ428067|Slc6a20a|102680|solute carrier family 6 (neurotransmitter transporter), member 20A
mm9_v1_chr2_+_164312376_164312376	0.135814	CAGCAGG	AK003735|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_001048228|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr4_+_140924106_140924134	0.134847	CAGCAGG	BC147048|Fam131c|277743|family with sequence similarity 131, member C	BC147049|Fam131c|277743|family with sequence similarity 131, member C	NM_001085513|Fam131c|277743|family with sequence similarity 131, member C
mm9_v1_chr1_+_75476106_75476188	0.134293	CAGCAGG	NM_177056|Tmem198|319998|transmembrane protein 198	BC059868|Tmem198|319998|transmembrane protein 198	AK038957|Tmem198|319998|transmembrane protein 198	AK082334|Tmem198|319998|transmembrane protein 198
mm9_v1_chr1_-_167124442_167124588	0.134159	CAGCAGG	BC017549|Sft2d2|108735|SFT2 domain containing 2	AK036578|Sft2d2|108735|SFT2 domain containing 2	AK170590|Sft2d2|108735|SFT2 domain containing 2	AK156973|Sft2d2|108735|SFT2 domain containing 2	AK075812|Sft2d2|108735|SFT2 domain containing 2	NM_145512|Sft2d2|108735|SFT2 domain containing 2
mm9_v1_chr6_-_53018566_53018625	0.133469	CAGCAGG	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr11_+_75401554_75401692	0.133315	CAGCAGG	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr4_+_155367019_155367119	0.132627	CAGCAGG	D50461|Sdf4|20318|stromal cell derived factor 4	BC068152|Sdf4|20318|stromal cell derived factor 4	NM_011341|Sdf4|20318|stromal cell derived factor 4	AK090319|Sdf4|20318|stromal cell derived factor 4	U45977|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr12_-_86715612_86715842	0.132145	CAGCAGG	AK150605|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152656|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC064755|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC085097|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK003676|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK084117|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152643|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	NM_026775|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)
mm9_v1_chr9_+_53619341_53619344	0.131795	CAGCAGG	NM_028060|Slc35f2|72022|solute carrier family 35, member F2	BC055843|Slc35f2|72022|solute carrier family 35, member F2
mm9_v1_chr17_+_28046196_28046431	0.131583	CAGCAGG	BC050847|Anks1|224650|ankyrin repeat and SAM domain containing 1	NM_181413|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK129094|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK147273|Anks1|224650|ankyrin repeat and SAM domain containing 1
mm9_v1_chr7_+_107520742_107520781	0.131435	CAGCAGG	NM_001017985|C2cd3|277939|C2 calcium-dependent domain containing 3	AK171263|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr4_+_149611305_149611392	0.130439	CAGCAGG	NM_023119|Eno1|13806|enolase 1, alpha non-neuron	AK002336|Eno1|13806|enolase 1, alpha non-neuron	AK014335|Eno1|13806|enolase 1, alpha non-neuron	AK147987|Eno1|13806|enolase 1, alpha non-neuron	AK150161|Eno1|13806|enolase 1, alpha non-neuron	AK150192|Eno1|13806|enolase 1, alpha non-neuron	AK153321|Eno1|13806|enolase 1, alpha non-neuron	AK002322|Eno1|13806|enolase 1, alpha non-neuron	BC003934|Eno1|13806|enolase 1, alpha non-neuron	AK204692|Eno1|13806|enolase 1, alpha non-neuron	AK088788|Eno1|13806|enolase 1, alpha non-neuron	X52379|Eno1|13806|enolase 1, alpha non-neuron	BC003891|Eno1|13806|enolase 1, alpha non-neuron	BC010685|Eno1|13806|enolase 1, alpha non-neuron	BC083334|Eno1|13806|enolase 1, alpha non-neuron	BC024644|Eno1|13806|enolase 1, alpha non-neuron	BC039179|Eno1|13806|enolase 1, alpha non-neuron
mm9_v1_chr14_+_71289933_71289944	0.12954	CAGCAGG	AK138512|Gfra2|14586|glial cell line derived neurotrophic factor family receptor alpha 2	AK149349|Gfra2|14586|glial cell line derived neurotrophic factor family receptor alpha 2	NM_008115|Gfra2|14586|glial cell line derived neurotrophic factor family receptor alpha 2
mm9_v1_chr7_+_16683891_16684052	0.129316	CAGCAGG	AK050623|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK171998|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	BC004804|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK013895|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK004826|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK005372|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK136689|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	NM_025898|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr7_+_54102451_54102582	0.129102	CAGCAGG	NM_001136069|Ldha|16828|lactate dehydrogenase A	U13687|Ldha|16828|lactate dehydrogenase A
mm9_v1_chr18_+_31919533_31919621	0.128321	CAGCAGG	BC056948|Ammecr1l|225339|AMME chromosomal region gene 1-like	NM_153515|Ammecr1l|225339|AMME chromosomal region gene 1-like	AK151257|Ammecr1l|225339|AMME chromosomal region gene 1-like
mm9_v1_chr5_-_37380147_37380223	0.128266	CAGCAGG	AJ011971|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AF084482|Wfs1|22393|Wolfram syndrome 1 homolog (human)	BC046988|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK144561|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK170180|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK145023|Wfs1|22393|Wolfram syndrome 1 homolog (human)	NM_011716|Wfs1|22393|Wolfram syndrome 1 homolog (human)
mm9_v1_chr9_-_42913797_42913909	0.128029	CAGCAGG	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr8_-_96536437_96536583	0.127299	CAGCAGG	BC040338|Amfr|23802|autocrine motility factor receptor	BC034538|Amfr|23802|autocrine motility factor receptor	AK038442|Amfr|23802|autocrine motility factor receptor	AK170716|Amfr|23802|autocrine motility factor receptor	AK157327|Amfr|23802|autocrine motility factor receptor	NM_011787|Amfr|23802|autocrine motility factor receptor
mm9_v1_chr2_+_144419797_144419818	0.126661	CAGCAGG	AK002610|Gm561|228715|predicted gene 561	NM_001033297|Gm561|228715|predicted gene 561	BC147042|Gm561|228715|predicted gene 561	BC147043|Gm561|228715|predicted gene 561	AK010324|Gm561|228715|predicted gene 561
mm9_v1_chr14_+_55713609_55713673	0.126202	CAGCAGG	NM_153083|Thtpa|105663|thiamine triphosphatase
mm9_v1_chr13_+_90229271_90229367	0.126012	CAGCAGG	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr9_+_44580978_44581111	0.125473	CAGCAGG	AJ249981|Ift46|76568|intraflagellar transport 46 homolog (Chlamydomonas)	AK005360|Ift46|76568|intraflagellar transport 46 homolog (Chlamydomonas)	AK032880|Ift46|76568|intraflagellar transport 46 homolog (Chlamydomonas)	NM_023831|Ift46|76568|intraflagellar transport 46 homolog (Chlamydomonas)
mm9_v1_chr17_+_56109884_56109905	0.123393	CAGCAGG	AK142491|Shd|20420|src homology 2 domain-containing transforming protein D	NM_001159523|Shd|20420|src homology 2 domain-containing transforming protein D	NM_009168|Shd|20420|src homology 2 domain-containing transforming protein D	AB018423|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr11_+_72774670_72774671	0.122917	CAGCAGG	AK155904|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_001163336|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_001163337|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_016745|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	AK089487|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous
mm9_v1_chr7_+_17323737_17323870	0.12264	CAGCAGG	AK146584|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit	NM_198613|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit	BC052499|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit
mm9_v1_chr9_+_110322311_110322361	0.122105	CAGCAGG	NM_008694|Ngp|18054|neutrophilic granule protein	BC119403|Ngp|18054|neutrophilic granule protein	BC119405|Ngp|18054|neutrophilic granule protein	U95002|Ngp|18054|neutrophilic granule protein	AK009649|Ngp|18054|neutrophilic granule protein	AK165210|Ngp|18054|neutrophilic granule protein
mm9_v1_chr14_+_28242002_28242052	0.121741	CAGCAGG	AK016751|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	AK044563|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_001114879|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_028945|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed
mm9_v1_chr6_-_58974400_58974495	0.121559	CAGCAGG	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr7_-_17613079_17613266	0.121282	CAGCAGG	U12204|Ppp5c|19060|protein phosphatase 5, catalytic subunit	BC003744|Ppp5c|19060|protein phosphatase 5, catalytic subunit	AF018262|Ppp5c|19060|protein phosphatase 5, catalytic subunit	NM_011155|Ppp5c|19060|protein phosphatase 5, catalytic subunit
mm9_v1_chr9_-_96264688_96264739	0.121166	CAGCAGG	NM_007502|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	U59761|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	BC079916|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK168273|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK032516|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK151700|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK151841|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK159532|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr16_-_18235102_18235235	0.120972	CAGCAGG	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr12_-_76697166_76697196	0.119732	CAGCAGG	BC094387|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	AK220163|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	BC085149|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform	NM_012024|Ppp2r5e|26932|protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
mm9_v1_chr11_-_76384852_76384920	0.118173	CAGCAGG	AK142364|Abr|109934|active BCR-related gene	NM_198895|Abr|109934|active BCR-related gene
mm9_v1_chr2_+_118489312_118489451	0.11804	CAGCAGG	BC079572|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	NM_001033254|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	BC150754|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr8_-_49075884_49075954	0.117913	CAGCAGG	AK147648|Wwc2|52357|WW, C2 and coiled-coil domain containing 2	BC067050|Wwc2|52357|WW, C2 and coiled-coil domain containing 2	NM_133791|Wwc2|52357|WW, C2 and coiled-coil domain containing 2	AB045323|Wwc2|52357|WW, C2 and coiled-coil domain containing 2
mm9_v1_chr1_-_174012771_174012895	0.117733	CAGCAGG	AK033314|Ncstn|59287|nicastrin	AK170173|Ncstn|59287|nicastrin	AK172579|Ncstn|59287|nicastrin	BC019998|Ncstn|59287|nicastrin	AF240469|Ncstn|59287|nicastrin	AK170244|Ncstn|59287|nicastrin	AK170369|Ncstn|59287|nicastrin	AK129102|Ncstn|59287|nicastrin	NM_021607|Ncstn|59287|nicastrin
mm9_v1_chr6_+_129483206_129483210	0.116788	CAGCAGG	AK018687|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	BC024706|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	NM_020590|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm9_v1_chr19_+_42245036_42245077	0.116045	CAGCAGG	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr10_+_51953390_51953445	0.115773	CAGCAGG	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr15_+_78707595_78707620	0.115657	CAGCAGG	BC026802|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	NM_145929|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1
mm9_v1_chr14_-_56503083_56503107	0.115619	CAGCAGG	BC065108|Cbln3|56410|cerebellin 3 precursor protein	NM_019820|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chrX_+_70656434_70656441	0.115255	CAGCAGG	U47104|Zfp92|22754|zinc finger protein 92	AK141522|Zfp92|22754|zinc finger protein 92	NM_009566|Zfp92|22754|zinc finger protein 92
mm9_v1_chr19_+_46673553_46673665	0.115162	CAGCAGG	NM_001177812|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	NM_146099|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK087487|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	BC026369|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK154686|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK169294|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	BC058949|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed
mm9_v1_chr11_+_75444489_75444601	0.114623	CAGCAGG	U96724|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK054436|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK078104|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	BC066112|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	NM_008916|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK052817|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK164290|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK085743|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	BC014725|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AF483522|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AF483523|Inpp5k|19062|inositol polyphosphate 5-phosphatase K
mm9_v1_chr2_-_162486882_162486956	0.113967	CAGCAGG	AF244125|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	NM_021464|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr19_+_46227039_46227050	0.11396	CAGCAGG	BC076569|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1	NM_178930|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr2_-_34769479_34769559	0.113902	CAGCAGG	BC027776|Phf19|74016|PHD finger protein 19	AK014380|Phf19|74016|PHD finger protein 19	NM_028716|Phf19|74016|PHD finger protein 19	AK014030|Phf19|74016|PHD finger protein 19
mm9_v1_chr3_-_116510948_116511083	0.112426	CAGCAGG	AK087855|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK041661|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK036225|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	NM_001081326|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm9_v1_chr2_-_91550688_91550738	0.111992	CAGCAGG	BC023673|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK163962|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC023712|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC033419|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK149672|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171440|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC016669|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	NM_145528|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK154470|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171206|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr8_-_35209773_35209872	0.111608	CAGCAGG	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr11_-_120239930_120240089	0.111172	CAGCAGG	BC034203|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK009114|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK148234|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK147900|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK165631|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK082976|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	NM_027980|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene
mm9_v1_chr8_+_86590718_86590827	0.111101	CAGCAGG	AK147790|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK036208|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK044607|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	NM_009055|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	BC057018|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK083571|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	X76088|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)
mm9_v1_chr5_+_139728268_139728480	0.110597	CAGCAGG	NM_026269|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	AK003551|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr1_+_108068405_108068445	0.110429	CAGCAGG	NM_133821|Phlpp1|98432|PH domain and leucine rich repeat protein phosphatase 1
mm9_v1_chr2_-_150865063_150865140	0.110085	CAGCAGG	AK164971|Nanp|67311|N-acetylneuraminic acid phosphatase	BC018527|Nanp|67311|N-acetylneuraminic acid phosphatase	AK005566|Nanp|67311|N-acetylneuraminic acid phosphatase	AK021344|Nanp|67311|N-acetylneuraminic acid phosphatase	BC083086|Nanp|67311|N-acetylneuraminic acid phosphatase	NM_026086|Nanp|67311|N-acetylneuraminic acid phosphatase
mm9_v1_chr12_+_59312790_59312790	0.109676	CAGCAGG	AK046464|Sstr1|20605|somatostatin receptor 1	NM_009216|Sstr1|20605|somatostatin receptor 1
mm9_v1_chr4_-_155243505_155243560	0.107665	CAGCAGG	AK089229|Gltpd1|79554|glycolipid transfer protein domain containing 1	AK040664|Gltpd1|79554|glycolipid transfer protein domain containing 1	NM_024472|Gltpd1|79554|glycolipid transfer protein domain containing 1
mm9_v1_chr11_-_76391228_76391228	0.107513	CAGCAGG	NM_198894|Abr|109934|active BCR-related gene
mm9_v1_chr9_-_44575861_44575929	0.107357	CAGCAGG	BC034754|Arcn1|213827|archain 1	BC083152|Arcn1|213827|archain 1	BC017124|Arcn1|213827|archain 1	AK031385|Arcn1|213827|archain 1	BC033387|Arcn1|213827|archain 1	NM_145985|Arcn1|213827|archain 1	AK154066|Arcn1|213827|archain 1	AK028556|Arcn1|213827|archain 1	AK128973|Arcn1|213827|archain 1	BC023728|Arcn1|213827|archain 1	AK147747|Arcn1|213827|archain 1	AK047995|Arcn1|213827|archain 1
mm9_v1_chr12_+_17551678_17551699	0.10719	CAGCAGG	NM_013614|Odc1|18263|ornithine decarboxylase, structural 1
mm9_v1_chr11_-_94538693_94538823	0.104993	CAGCAGG	AJ291751|Xylt2|217119|xylosyltransferase II	AK086804|Xylt2|217119|xylosyltransferase II	AK150521|Xylt2|217119|xylosyltransferase II	AK153332|Xylt2|217119|xylosyltransferase II	AK083482|Xylt2|217119|xylosyltransferase II	AK158056|Xylt2|217119|xylosyltransferase II	NM_145828|Xylt2|217119|xylosyltransferase II
mm9_v1_chr9_-_108551631_108551731	0.104044	CAGCAGG	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr11_-_100981015_100981199	0.10391	CAGCAGG	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr7_-_88049882_88049956	0.103671	CAGCAGG	BC028490|Nmb|68039|neuromedin B	AK011929|Nmb|68039|neuromedin B	AK014077|Nmb|68039|neuromedin B	NM_026523|Nmb|68039|neuromedin B
mm9_v1_chr4_+_86520317_86520392	0.10354	CAGCAGG	BC059819|Acer2|230379|alkaline ceramidase 2	NM_139306|Acer2|230379|alkaline ceramidase 2	AK085306|Acer2|230379|alkaline ceramidase 2	AF282864|Acer2|230379|alkaline ceramidase 2	AY312515|Acer2|230379|alkaline ceramidase 2
mm9_v1_chr11_+_115048783_115048880	0.101809	CAGCAGG	NM_001033393|Tmem104|320534|transmembrane protein 104	AK171314|Tmem104|320534|transmembrane protein 104	AK155041|Tmem104|320534|transmembrane protein 104	AK040894|Tmem104|320534|transmembrane protein 104	AK171457|Tmem104|320534|transmembrane protein 104	AK167098|Tmem104|320534|transmembrane protein 104	AK049868|Tmem104|320534|transmembrane protein 104	BC140976|Tmem104|320534|transmembrane protein 104
mm9_v1_chr5_-_145726643_145726766	0.101642	CAGCAGG	AK154491|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1	NM_001038627|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1	NM_029438|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1	BC029097|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1
mm9_v1_chr11_+_74433092_74433113	0.100781	CAGCAGG	AK143211|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene	NM_001013784|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene
mm9_v1_chr2_+_127951773_127951787	0.100539	CAGCAGG	AK031285|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK037885|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK150464|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK152472|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK153542|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK162975|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_009754|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_207680|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_207681|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK082613|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	BC019556|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK011490|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK050192|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)
mm9_v1_chr11_+_102889847_102889897	0.0996186	CAGCAGG	AF043326|Nmt1|18107|N-myristoyltransferase 1	AK146523|Nmt1|18107|N-myristoyltransferase 1	BC021635|Nmt1|18107|N-myristoyltransferase 1	BC016526|Nmt1|18107|N-myristoyltransferase 1	NM_008707|Nmt1|18107|N-myristoyltransferase 1
mm9_v1_chr12_+_77634546_77634606	0.0995961	CAGCAGG	AK080928|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	NM_153804|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	BC096443|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	AK162025|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
mm9_v1_chr16_-_11909420_11909546	0.0977061	CAGCAGG	BC025476|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029379|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK032288|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK041329|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	BC034347|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK133977|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK080876|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK049721|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK134718|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	NM_146067|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029442|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1
mm9_v1_chr11_+_69579376_69579461	0.0945459	CAGCAGG	AK163593|Zbtb4|75580|zinc finger and BTB domain containing 4	NM_029348|Zbtb4|75580|zinc finger and BTB domain containing 4	AK147212|Zbtb4|75580|zinc finger and BTB domain containing 4
mm9_v1_chr18_-_34811357_34811396	0.0941455	CAGCAGG	BC059013|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK031459|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK038523|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK047789|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK048246|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK079681|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK044478|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK052567|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK075948|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK081461|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	NM_178347|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)
mm9_v1_chr18_+_65183180_65183324	0.0936771	CAGCAGG	NM_031881|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr5_+_138229004_138229102	0.093498	CAGCAGG	AK080079|Zcwpw1|381678|zinc finger, CW type with PWWP domain 1	NM_001005426|Zcwpw1|381678|zinc finger, CW type with PWWP domain 1	BC071186|Zcwpw1|381678|zinc finger, CW type with PWWP domain 1
mm9_v1_chr6_-_113145321_113145377	0.0933173	CAGCAGG	AK220449|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	BC085130|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	AK046437|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	NM_177763|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4
mm9_v1_chr17_-_10512217_10512250	0.0924215	CAGCAGG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr9_+_108838660_108838726	0.0919607	CAGCAGG	NM_025407|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK004031|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK160337|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK002292|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK151764|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK010553|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK013128|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK168218|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK167911|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	BC030064|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr4_-_132895228_132895231	0.0919584	CAGCAGG	AK172431|Wdtc1|230796|WD and tetratricopeptide repeats 1	NM_199306|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr10_-_80024245_80024324	0.0918502	CAGCAGG	BC039623|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC011438|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC069964|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC054843|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC025511|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK173108|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK012127|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK087016|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC052424|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK144769|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	NM_025852|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)
mm9_v1_chr3_+_142364014_142364083	0.0909916	CAGCAGG	AK145623|Ccbl2|229905|cysteine conjugate-beta lyase 2	AF363737|Ccbl2|229905|cysteine conjugate-beta lyase 2	AK049569|Ccbl2|229905|cysteine conjugate-beta lyase 2	NM_173763|Ccbl2|229905|cysteine conjugate-beta lyase 2	BC085287|Ccbl2|229905|cysteine conjugate-beta lyase 2
mm9_v1_chr6_+_90319485_90319663	0.0881293	CAGCAGG	AK081005|Zxdc|80292|ZXD family zinc finger C	NM_030260|Zxdc|80292|ZXD family zinc finger C	NM_173002|Zxdc|80292|ZXD family zinc finger C	BC003332|Zxdc|80292|ZXD family zinc finger C	AK042190|Zxdc|80292|ZXD family zinc finger C	AK044529|Zxdc|80292|ZXD family zinc finger C	AK030287|Zxdc|80292|ZXD family zinc finger C	AK047538|Zxdc|80292|ZXD family zinc finger C	AK042392|Zxdc|80292|ZXD family zinc finger C	AK080307|Zxdc|80292|ZXD family zinc finger C	AK044429|Zxdc|80292|ZXD family zinc finger C	AK044948|Zxdc|80292|ZXD family zinc finger C	AK169517|Zxdc|80292|ZXD family zinc finger C	AK047079|Zxdc|80292|ZXD family zinc finger C	AK137347|Zxdc|80292|ZXD family zinc finger C	AK141613|Zxdc|80292|ZXD family zinc finger C
mm9_v1_chr1_-_190831705_190831735	0.0871014	CAGCAGG	BC079581|Kctd3|226823|potassium channel tetramerisation domain containing 3	BC061458|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK049362|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK034380|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK087865|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK139700|Kctd3|226823|potassium channel tetramerisation domain containing 3	NM_172650|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK033491|Kctd3|226823|potassium channel tetramerisation domain containing 3
mm9_v1_chr2_+_84518544_84518790	0.0869567	CAGCAGG	NM_025885|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK010552|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK005399|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK168787|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK160579|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC082559|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC055404|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044207|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044302|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK209282|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)
mm9_v1_chr19_-_3575695_3575758	0.0869408	CAGCAGG	AK129392|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK088526|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	BC008529|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK035236|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK015925|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK018652|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_001164159|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_028999|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_029456|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3
mm9_v1_chr11_-_77990151_77990167	0.0867444	CAGCAGG	NM_080849|Nek8|140859|NIMA (never in mitosis gene a)-related expressed kinase 8
mm9_v1_chr8_+_131209533_131209569	0.0866153	CAGCAGG	NM_010578|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr2_+_180701966_180702005	0.0859223	CAGCAGG	BC027794|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	BC016228|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK030295|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AJ401461|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	BC052922|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK089321|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK052985|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK134402|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	BC059817|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	AK030520|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1	NM_001177706|Arfgap1|228998|ADP-ribosylation factor GTPase activating protein 1
mm9_v1_chr7_+_19511230_19511244	0.0859075	CAGCAGG	NM_001029877|Nova2|384569|neuro-oncological ventral antigen 2
mm9_v1_chr6_+_91106773_91106820	0.0855898	CAGCAGG	AK045994|Hdac11|232232|histone deacetylase 11	BC016208|Hdac11|232232|histone deacetylase 11	NM_144919|Hdac11|232232|histone deacetylase 11
mm9_v1_chr17_-_14831262_14831287	0.083417	CAGCAGG	NM_011581|Thbs2|21826|thrombospondin 2
mm9_v1_chr15_+_99556048_99556119	0.0831491	CAGCAGG	NM_183256|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	AK009401|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	BC059905|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene
mm9_v1_chr8_+_119028873_119028914	0.082796	CAGCAGG	BC048623|Dynlrb2|75465|dynein light chain roadblock-type 2	AK005789|Dynlrb2|75465|dynein light chain roadblock-type 2	NM_029297|Dynlrb2|75465|dynein light chain roadblock-type 2
mm9_v1_chr11_-_4494815_4494822	0.0815043	CAGCAGG	NM_028860|Mtmr3|74302|myotubularin related protein 3
mm9_v1_chr8_+_87213145_87213176	0.0813928	CAGCAGG	NM_001164559|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	NM_001164560|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	NM_198020|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	BC027404|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr17_-_24278482_24278583	0.0811208	CAGCAGG	AK165564|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF126294|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK149162|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	BC146001|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	BC146003|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF079535|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK149289|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AF086625|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK162677|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK143283|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK147835|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	AK147149|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	NM_001080773|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1	NM_011062|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1
mm9_v1_chr12_-_85702758_85702803	0.0805363	CAGCAGG	BC062132|Fam161b|217705|family with sequence similarity 161, member B	AK036740|Fam161b|217705|family with sequence similarity 161, member B	NM_172581|Fam161b|217705|family with sequence similarity 161, member B	AK034254|Fam161b|217705|family with sequence similarity 161, member B
mm9_v1_chr2_+_29682879_29682924	0.0799327	CAGCAGG	AK012124|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK019352|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049227|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049849|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	NM_026615|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK085178|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	BC026994|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK210360|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)
mm9_v1_chr9_-_107192203_107192207	0.0786247	CAGCAGG	AK170456|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	BC031467|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	NM_178907|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chr1_-_39707919_39708026	0.0785891	CAGCAGG	BC116790|Creg2|263764|cellular repressor of E1A-stimulated genes 2	BC116792|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK044192|Creg2|263764|cellular repressor of E1A-stimulated genes 2	NM_170597|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr13_-_115880163_115880420	0.078465	CAGCAGG	BC057160|Pelo|105083|pelota homolog (Drosophila)	BC050209|Pelo|105083|pelota homolog (Drosophila)	AK170635|Pelo|105083|pelota homolog (Drosophila)	NM_134058|Pelo|105083|pelota homolog (Drosophila)	AK146382|Pelo|105083|pelota homolog (Drosophila)	AK168228|Pelo|105083|pelota homolog (Drosophila)
mm9_v1_chr9_-_21875784_21875847	0.0776836	CAGCAGG	AY072705|Zfp653|319601|zinc finger protein 653	BC038037|Zfp653|319601|zinc finger protein 653	NM_177318|Zfp653|319601|zinc finger protein 653	AK171735|Zfp653|319601|zinc finger protein 653
mm9_v1_chr4_+_13711928_13711928	0.0775843	CAGCAGG	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr2_-_167486889_167487105	0.0769629	CAGCAGG	AK151326|Tmem189|407243|transmembrane protein 189	BC002270|Tmem189|407243|transmembrane protein 189	NM_145538|Tmem189|407243|transmembrane protein 189	AK151705|Tmem189|407243|transmembrane protein 189	AK170042|Tmem189|407243|transmembrane protein 189	AK088196|Tmem189|407243|transmembrane protein 189
mm9_v1_chrX_+_96133099_96133119	0.0766308	CAGCAGG	AK030473|Yipf6|77929|Yip1 domain family, member 6	AK053562|Yipf6|77929|Yip1 domain family, member 6	NM_207633|Yipf6|77929|Yip1 domain family, member 6
mm9_v1_chr10_-_80464109_80464109	0.0759073	CAGCAGG	AK158963|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	NM_001038655|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7
mm9_v1_chr11_-_58977197_58977301	0.0757852	CAGCAGG	AK172525|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	AK038625|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	AK133203|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	NM_173785|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene	BC094909|A230051G13Rik|216792|RIKEN cDNA A230051G13 gene
mm9_v1_chr15_-_84388245_84388282	0.0754887	CAGCAGG	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr18_+_11997728_11997798	0.0754683	CAGCAGG	AK156273|Cables1|63955|CDK5 and Abl enzyme substrate 1	AF133208|Cables1|63955|CDK5 and Abl enzyme substrate 1	NM_001146287|Cables1|63955|CDK5 and Abl enzyme substrate 1	NM_022021|Cables1|63955|CDK5 and Abl enzyme substrate 1	BC145142|Cables1|63955|CDK5 and Abl enzyme substrate 1	BC150714|Cables1|63955|CDK5 and Abl enzyme substrate 1
mm9_v1_chr3_+_152059620_152059689	0.0738481	CAGCAGG	BC060614|Zzz3|108946|zinc finger, ZZ domain containing 3	NM_198416|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chr7_+_6124083_6124158	0.073689	CAGCAGG	BC023396|Zfp444|72667|zinc finger protein 444	AK169973|Zfp444|72667|zinc finger protein 444	AK018079|Zfp444|72667|zinc finger protein 444	NM_001146024|Zfp444|72667|zinc finger protein 444	NM_028316|Zfp444|72667|zinc finger protein 444	AK089886|Zfp444|72667|zinc finger protein 444	BC037180|Zfp444|72667|zinc finger protein 444	BC139359|Zfp444|72667|zinc finger protein 444	BC139361|Zfp444|72667|zinc finger protein 444
mm9_v1_chr3_-_88893885_88893966	0.0734403	CAGCAGG	AK170210|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083808|Rusc1|72296|RUN and SH3 domain containing 1	AK170012|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr2_+_177927788_177927833	0.0733075	CAGCAGG	AJ632222|Phactr3|74189|phosphatase and actin regulator 3	NM_001007154|Phactr3|74189|phosphatase and actin regulator 3	AK038449|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr6_-_39675456_39675512	0.0722872	CAGCAGG	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr6_-_113327472_113327595	0.0721592	CAGCAGG	AK180989|Tada3|101206|transcriptional adaptor 3	BC022707|Tada3|101206|transcriptional adaptor 3	BC023879|Tada3|101206|transcriptional adaptor 3	BC026630|Tada3|101206|transcriptional adaptor 3	NM_133932|Tada3|101206|transcriptional adaptor 3
mm9_v1_chr4_+_32744074_32744093	0.0719029	CAGCAGG	AK144722|Mdn1|100019|midasin homolog (yeast)	NM_001081392|Mdn1|100019|midasin homolog (yeast)
mm9_v1_chr1_-_173152634_173152646	0.0717374	CAGCAGG	AK028388|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)	NM_001037170|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr15_-_101632762_101632762	0.0708456	CAGCAGG	BC067067|Krt73|223915|keratin 73	NM_212485|Krt73|223915|keratin 73
mm9_v1_chr5_+_81450617_81450617	0.070651	CAGCAGG	BC088989|Lphn3|319387|latrophilin 3	NM_198702|Lphn3|319387|latrophilin 3
mm9_v1_chrX_-_7318412_7318449	0.0696609	CAGCAGG	BC053918|Ccdc120|54648|coiled-coil domain containing 120	NM_207202|Ccdc120|54648|coiled-coil domain containing 120
mm9_v1_chr15_-_31297286_31297513	0.0693456	CAGCAGG	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr17_+_26852581_26852657	0.0681336	CAGCAGG	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr10_-_18735154_18735215	0.0681241	CAGCAGG	AK153238|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK088297|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK151921|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC050259|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC054806|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC060221|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_009397|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr10_+_79422870_79422988	0.0680492	CAGCAGG	AK087505|Wdr18|216156|WD repeat domain 18	AK133716|Wdr18|216156|WD repeat domain 18	BC095984|Wdr18|216156|WD repeat domain 18	NM_175450|Wdr18|216156|WD repeat domain 18	AK032251|Wdr18|216156|WD repeat domain 18	AK050106|Wdr18|216156|WD repeat domain 18	AK160713|Wdr18|216156|WD repeat domain 18	AK163465|Wdr18|216156|WD repeat domain 18	AK166113|Wdr18|216156|WD repeat domain 18	AK168691|Wdr18|216156|WD repeat domain 18	AK082695|Wdr18|216156|WD repeat domain 18
mm9_v1_chr10_+_74499810_74499858	0.0680282	CAGCAGG	AK043946|Rab36|76877|RAB36, member RAS oncogene family	AK018269|Rab36|76877|RAB36, member RAS oncogene family	AK038445|Rab36|76877|RAB36, member RAS oncogene family	AK087892|Rab36|76877|RAB36, member RAS oncogene family	AK163455|Rab36|76877|RAB36, member RAS oncogene family	NM_029781|Rab36|76877|RAB36, member RAS oncogene family	BC119094|Rab36|76877|RAB36, member RAS oncogene family	BC119098|Rab36|76877|RAB36, member RAS oncogene family
mm9_v1_chr7_-_48755259_48755259	0.0680072	CAGCAGG	AK164198|AW146154|101835|expressed sequence AW146154	NM_001033530|AW146154|101835|expressed sequence AW146154
mm9_v1_chr7_-_149088233_149088349	0.0679568	CAGCAGG	AK049394|Tollip|54473|toll interacting protein	BC062139|Tollip|54473|toll interacting protein	AK045422|Tollip|54473|toll interacting protein	BC053515|Tollip|54473|toll interacting protein	AK161312|Tollip|54473|toll interacting protein	AJ242971|Tollip|54473|toll interacting protein	AK016482|Tollip|54473|toll interacting protein	NM_023764|Tollip|54473|toll interacting protein	AK078391|Tollip|54473|toll interacting protein	AK049263|Tollip|54473|toll interacting protein
mm9_v1_chr14_-_70132309_70132386	0.067901	CAGCAGG	BC024115|Chmp7|105513|CHMP family, member 7	BC033365|Chmp7|105513|CHMP family, member 7	NM_134078|Chmp7|105513|CHMP family, member 7
mm9_v1_chr7_+_97591287_97591327	0.0678872	CAGCAGG	NM_145151|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr17_+_8994520_8994643	0.0675961	CAGCAGG	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr8_+_97296066_97296079	0.0674134	CAGCAGG	NM_009142|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr13_+_40955500_40955723	0.067365	CAGCAGG	AK077598|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_023887|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK156328|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435148|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr9_+_120842695_120842727	0.0663948	CAGCAGG	M90364|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	NM_001165902|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr15_-_66663390_66663390	0.0663404	CAGCAGG	AK036167|Sla|20491|src-like adaptor	NM_001029841|Sla|20491|src-like adaptor
mm9_v1_chrX_-_71269249_71269268	0.0661198	CAGCAGG	BC004778|Irak1|16179|interleukin-1 receptor-associated kinase 1	AF103876|Irak1|16179|interleukin-1 receptor-associated kinase 1	AY184362|Irak1|16179|interleukin-1 receptor-associated kinase 1	AY184363|Irak1|16179|interleukin-1 receptor-associated kinase 1	AY184364|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177975|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177973|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177974|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177976|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_008363|Irak1|16179|interleukin-1 receptor-associated kinase 1
mm9_v1_chr18_-_81130721_81130824	0.064547	CAGCAGG	BC057000|Atp9b|50771|ATPase, class II, type 9B	BC079626|Atp9b|50771|ATPase, class II, type 9B	AK044331|Atp9b|50771|ATPase, class II, type 9B	AK166562|Atp9b|50771|ATPase, class II, type 9B	NM_015805|Atp9b|50771|ATPase, class II, type 9B
mm9_v1_chr4_-_82970054_82970102	0.0644402	CAGCAGG	BC151021|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK007856|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK037208|Ttc39b|69863|tetratricopeptide repeat domain 39B	NM_027238|Ttc39b|69863|tetratricopeptide repeat domain 39B
mm9_v1_chr18_-_68459958_68459986	0.0644328	CAGCAGG	AK077093|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	NM_153794|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene
mm9_v1_chr15_-_93167308_93167408	0.0641123	CAGCAGG	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr2_-_181022670_181022690	0.0635014	CAGCAGG	BC059066|Gmeb2|229004|glucocorticoid modulatory element binding protein 2	NM_198169|Gmeb2|229004|glucocorticoid modulatory element binding protein 2
mm9_v1_chr9_+_107483603_107483637	0.0630431	CAGCAGG	BC018457|Hyal3|109685|hyaluronoglucosaminidase 3	NM_178020|Hyal3|109685|hyaluronoglucosaminidase 3	AY048681|Hyal3|109685|hyaluronoglucosaminidase 3
mm9_v1_chr18_+_36838868_36838897	0.0623863	CAGCAGG	NM_001083317|Slc35a4|67843|solute carrier family 35, member A4	NM_026404|Slc35a4|67843|solute carrier family 35, member A4
mm9_v1_chr11_-_100683830_100683883	0.0622981	CAGCAGG	AY040231|Stat5b|20851|signal transducer and activator of transcription 5B	AY042906|Stat5b|20851|signal transducer and activator of transcription 5B	AY044901|Stat5b|20851|signal transducer and activator of transcription 5B	AY044902|Stat5b|20851|signal transducer and activator of transcription 5B	AY044903|Stat5b|20851|signal transducer and activator of transcription 5B	U21110|Stat5b|20851|signal transducer and activator of transcription 5B	AK088966|Stat5b|20851|signal transducer and activator of transcription 5B	AK154014|Stat5b|20851|signal transducer and activator of transcription 5B	NM_011489|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr11_+_75007475_75007498	0.0616169	CAGCAGG	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr7_+_4071087_4071169	0.0607888	CAGCAGG	AK043998|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001001454|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001109765|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_021324|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK031550|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr12_-_93087514_93087619	0.0591956	CAGCAGG	AF063095|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160936|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	BC026816|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005023|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK146022|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK161546|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160420|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005544|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK220502|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_001039089|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_011344|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)
mm9_v1_chr11_+_4035162_4035238	0.0588015	CAGCAGG	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr11_-_74537877_74537918	0.0582266	CAGCAGG	NM_013625|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr5_+_54389740_54389855	0.0571812	CAGCAGG	AK173183|Stim2|116873|stromal interaction molecule 2	NM_001081103|Stim2|116873|stromal interaction molecule 2	AK080310|Stim2|116873|stromal interaction molecule 2	BC137881|Stim2|116873|stromal interaction molecule 2	BC145001|Stim2|116873|stromal interaction molecule 2
mm9_v1_chr7_-_27963760_27963951	0.0570016	CAGCAGG	AB232592|Rab4b|19342|RAB4B, member RAS oncogene family	AK140513|Rab4b|19342|RAB4B, member RAS oncogene family	BC007147|Rab4b|19342|RAB4B, member RAS oncogene family	AF408432|Rab4b|19342|RAB4B, member RAS oncogene family	BC096654|Rab4b|19342|RAB4B, member RAS oncogene family	AK005314|Rab4b|19342|RAB4B, member RAS oncogene family	NM_029391|Rab4b|19342|RAB4B, member RAS oncogene family	AK170552|Rab4b|19342|RAB4B, member RAS oncogene family
mm9_v1_chr7_-_137663020_137663074	0.0567603	CAGCAGG	BC050948|Ate1|11907|arginyltransferase 1	NM_001136054|Ate1|11907|arginyltransferase 1	AK167591|Ate1|11907|arginyltransferase 1	BC042601|Ate1|11907|arginyltransferase 1	NM_013799|Ate1|11907|arginyltransferase 1	AK148442|Ate1|11907|arginyltransferase 1
mm9_v1_chr2_-_120676125_120676339	0.0560823	CAGCAGG	AK046978|Ttbk2|140810|tau tubulin kinase 2	AK053820|Ttbk2|140810|tau tubulin kinase 2	AK137024|Ttbk2|140810|tau tubulin kinase 2	AK148269|Ttbk2|140810|tau tubulin kinase 2	NM_001024856|Ttbk2|140810|tau tubulin kinase 2	NM_001024857|Ttbk2|140810|tau tubulin kinase 2	NM_080788|Ttbk2|140810|tau tubulin kinase 2	AK077011|Ttbk2|140810|tau tubulin kinase 2
mm9_v1_chr6_-_122806122_122806175	0.0559503	CAGCAGG	AK154229|C3ar1|12267|complement component 3a receptor 1	NM_009779|C3ar1|12267|complement component 3a receptor 1	AK054017|C3ar1|12267|complement component 3a receptor 1
mm9_v1_chr8_+_87225355_87225368	0.0558419	CAGCAGG	NM_008535|Lyl1|17095|lymphoblastomic leukemia 1
mm9_v1_chr10_+_128185549_128185593	0.0554617	CAGCAGG	BC049647|Wibg|78428|within bgcn homolog (Drosophila)	NM_001170869|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr15_-_75760134_75760220	0.0551917	CAGCAGG	M30127|Tsta3|22122|tissue specific transplantation antigen P35B	NM_031201|Tsta3|22122|tissue specific transplantation antigen P35B	BC089003|Tsta3|22122|tissue specific transplantation antigen P35B	AK029632|Tsta3|22122|tissue specific transplantation antigen P35B
mm9_v1_chr12_+_82960953_82961016	0.0549154	CAGCAGG	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chr15_-_99602827_99602945	0.0547757	CAGCAGG	AK146417|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145589|Lass5|71949|LAG1 homolog, ceramide synthase 5	AY029533|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK075694|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK146220|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145762|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK010241|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC043059|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC046797|Lass5|71949|LAG1 homolog, ceramide synthase 5	NM_028015|Lass5|71949|LAG1 homolog, ceramide synthase 5
mm9_v1_chr6_+_124948627_124948627	0.054775	CAGCAGG	AK148352|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145926|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr10_-_122633922_122634056	0.0546437	CAGCAGG	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr17_+_56857171_56857246	0.0540518	CAGCAGG	NM_027244|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	AK008201|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	BC053075|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	BC059729|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	BC027690|Ndufa11|69875|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm9_v1_chr8_+_109817355_109817761	0.0534136	CAGCAGG	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr5_-_135115175_135115219	0.0532697	CAGCAGG	AK169312|Eif4h|22384|eukaryotic translation initiation factor 4H	AK149841|Eif4h|22384|eukaryotic translation initiation factor 4H	AK136999|Eif4h|22384|eukaryotic translation initiation factor 4H	AK135390|Eif4h|22384|eukaryotic translation initiation factor 4H	AK166567|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169353|Eif4h|22384|eukaryotic translation initiation factor 4H	NM_033561|Eif4h|22384|eukaryotic translation initiation factor 4H	AK045004|Eif4h|22384|eukaryotic translation initiation factor 4H	AK150088|Eif4h|22384|eukaryotic translation initiation factor 4H	BC014796|Eif4h|22384|eukaryotic translation initiation factor 4H	AK088818|Eif4h|22384|eukaryotic translation initiation factor 4H	AK168872|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169407|Eif4h|22384|eukaryotic translation initiation factor 4H	AK132034|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr14_+_27457610_27457865	0.0525177	CAGCAGG	AK013892|Arf4|11843|ADP-ribosylation factor 4	AK002302|Arf4|11843|ADP-ribosylation factor 4	AK168793|Arf4|11843|ADP-ribosylation factor 4	NM_007479|Arf4|11843|ADP-ribosylation factor 4	AK081686|Arf4|11843|ADP-ribosylation factor 4	AK153011|Arf4|11843|ADP-ribosylation factor 4	BC115650|Arf4|11843|ADP-ribosylation factor 4	BC115651|Arf4|11843|ADP-ribosylation factor 4	D87901|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr15_-_102993714_102993747	0.0522765	CAGCAGG	BC062960|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	NM_027885|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK090367|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK198888|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK204061|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase
mm9_v1_chr6_+_88852244_88852316	0.0512001	CAGCAGG	NM_011906|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK155116|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK172045|Tpra1|24100|transmembrane protein, adipocyte asscociated 1
mm9_v1_chr7_-_112900699_112900744	0.0510839	CAGCAGG	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr19_-_5457470_5457607	0.0509891	CAGCAGG	BC016659|Ccdc85b|240514|coiled-coil domain containing 85B	BC094592|Ccdc85b|240514|coiled-coil domain containing 85B	BC058411|Ccdc85b|240514|coiled-coil domain containing 85B	NM_198616|Ccdc85b|240514|coiled-coil domain containing 85B
mm9_v1_chr5_-_76374399_76374520	0.0504464	CAGCAGG	X59397|Kdr|16542|kinase insert domain protein receptor	BC020530|Kdr|16542|kinase insert domain protein receptor	NM_010612|Kdr|16542|kinase insert domain protein receptor	S53103|Kdr|16542|kinase insert domain protein receptor	AK141938|Kdr|16542|kinase insert domain protein receptor	EU884114|Kdr|16542|kinase insert domain protein receptor	AK054510|Kdr|16542|kinase insert domain protein receptor
mm9_v1_chr9_-_54407862_54407915	0.050441	CAGCAGG	AB016080|Cib2|56506|calcium and integrin binding family member 2	NM_019686|Cib2|56506|calcium and integrin binding family member 2	BC005739|Cib2|56506|calcium and integrin binding family member 2
mm9_v1_chr1_-_134921914_134921968	0.0497304	CAGCAGG	AK028493|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK161882|Mdm4|17248|transformed mouse 3T3 cell double minute 4	EU568360|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK083349|Mdm4|17248|transformed mouse 3T3 cell double minute 4	NM_008575|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK049576|Mdm4|17248|transformed mouse 3T3 cell double minute 4	BC003750|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK049690|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AK017719|Mdm4|17248|transformed mouse 3T3 cell double minute 4	AF007110|Mdm4|17248|transformed mouse 3T3 cell double minute 4
mm9_v1_chr6_-_87761537_87761854	0.0479393	CAGCAGG	AB232640|Rab43|69834|RAB43, member RAS oncogene family	AJ534465|Rab43|69834|RAB43, member RAS oncogene family	AK010874|Rab43|69834|RAB43, member RAS oncogene family	AK158283|Rab43|69834|RAB43, member RAS oncogene family	NM_001039394|Rab43|69834|RAB43, member RAS oncogene family
mm9_v1_chr11_+_98724908_98724950	0.0477421	CAGCAGG	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr11_+_101037415_101037470	0.0474034	CAGCAGG	AF039833|Cntnap1|53321|contactin associated protein-like 1	NM_016782|Cntnap1|53321|contactin associated protein-like 1
mm9_v1_chr2_-_35835071_35835146	0.0467713	CAGCAGG	AM690755|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_028921|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_029774|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	AK037481|Ttll11|74410|tubulin tyrosine ligase-like family, member 11
mm9_v1_chr2_-_57905140_57905276	0.0467385	CAGCAGG	DQ334270|Ermn|77767|ermin, ERM-like protein	BC089515|Ermn|77767|ermin, ERM-like protein	NM_029972|Ermn|77767|ermin, ERM-like protein	BC090670|Ermn|77767|ermin, ERM-like protein	AK078089|Ermn|77767|ermin, ERM-like protein	AK136820|Ermn|77767|ermin, ERM-like protein	AK137305|Ermn|77767|ermin, ERM-like protein	AK020733|Ermn|77767|ermin, ERM-like protein	AK220372|Ermn|77767|ermin, ERM-like protein
mm9_v1_chr19_+_34715368_34715406	0.0451467	CAGCAGG	AK151125|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151278|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK150609|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK153532|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151298|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK089608|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK144230|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK150352|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151983|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK153184|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK150424|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK151158|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK152112|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK152753|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK157848|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	NM_008331|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK153500|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	AK131669|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	U43084|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1	BC003768|Ifit1|15957|interferon-induced protein with tetratricopeptide repeats 1
mm9_v1_chr13_+_40982534_40982735	0.0447729	CAGCAGG	NM_008105|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK080061|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK054226|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AB037597|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435149|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr9_-_110782576_110782616	0.044566	CAGCAGG	AK031966|Tmie|20776|transmembrane inner ear	AF481143|Tmie|20776|transmembrane inner ear	NM_146260|Tmie|20776|transmembrane inner ear	AK030341|Tmie|20776|transmembrane inner ear
mm9_v1_chr7_-_26504053_26504077	0.044483	CAGCAGG	AK155466|Ccdc97|52132|coiled-coil domain containing 97	AK045509|Ccdc97|52132|coiled-coil domain containing 97	AK088221|Ccdc97|52132|coiled-coil domain containing 97	AK004762|Ccdc97|52132|coiled-coil domain containing 97	NM_028771|Ccdc97|52132|coiled-coil domain containing 97
mm9_v1_chr15_-_98701613_98701613	0.0444424	CAGCAGG	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chr11_+_94981430_94981448	0.0443948	CAGCAGG	NM_010055|Dlx3|13393|distal-less homeobox 3	BC058852|Dlx3|13393|distal-less homeobox 3
mm9_v1_chr11_+_121563691_121563785	0.044062	CAGCAGG	BC024445|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK034855|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK053718|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK085880|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK170549|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK170800|Metrnl|210029|meteorin, glial cell differentiation regulator-like	NM_144797|Metrnl|210029|meteorin, glial cell differentiation regulator-like	BC026646|Metrnl|210029|meteorin, glial cell differentiation regulator-like	BC019776|Metrnl|210029|meteorin, glial cell differentiation regulator-like
mm9_v1_chr15_+_81633102_81633182	0.0437441	CAGCAGG	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr14_-_73725576_73725603	0.0432196	CAGCAGG	AK011246|Rb1|19645|retinoblastoma 1	BC096525|Rb1|19645|retinoblastoma 1	NM_009029|Rb1|19645|retinoblastoma 1
mm9_v1_chr4_+_120550473_120550605	0.0432165	CAGCAGG	AY326953|Rims3|242662|regulating synaptic membrane exocytosis 3	BC115536|Rims3|242662|regulating synaptic membrane exocytosis 3	NM_182929|Rims3|242662|regulating synaptic membrane exocytosis 3	AK122226|Rims3|242662|regulating synaptic membrane exocytosis 3
mm9_v1_chr6_-_40535762_40535819	0.043069	CAGCAGG	BC104364|Clec5a|23845|C-type lectin domain family 5, member a	BC104365|Clec5a|23845|C-type lectin domain family 5, member a	AK036697|Clec5a|23845|C-type lectin domain family 5, member a	AF139769|Clec5a|23845|C-type lectin domain family 5, member a	AK046600|Clec5a|23845|C-type lectin domain family 5, member a	AK137482|Clec5a|23845|C-type lectin domain family 5, member a	NM_001038604|Clec5a|23845|C-type lectin domain family 5, member a	NM_021364|Clec5a|23845|C-type lectin domain family 5, member a	AK155409|Clec5a|23845|C-type lectin domain family 5, member a
mm9_v1_chr15_-_76059926_76059969	0.0413352	CAGCAGG	AF188019|Plec|18810|plectin	AY480034|Plec|18810|plectin	NM_201385|Plec|18810|plectin
mm9_v1_chr2_-_120557235_120557264	0.0410668	CAGCAGG	BC117555|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	AK157271|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	NM_026891|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)
mm9_v1_chr17_+_83614611_83614641	0.0410192	CAGCAGG	NM_134117|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB381893|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB436780|Pkdcc|106522|protein kinase domain containing, cytoplasmic	BC086639|Pkdcc|106522|protein kinase domain containing, cytoplasmic
mm9_v1_chr3_-_107261815_107261829	0.0410095	CAGCAGG	BC024837|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4	NM_145922|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4
mm9_v1_chr13_-_74346106_74346168	0.0407322	CAGCAGG	AK012940|Exoc3|211446|exocyst complex component 3	AK131141|Exoc3|211446|exocyst complex component 3	BC031743|Exoc3|211446|exocyst complex component 3	AK088333|Exoc3|211446|exocyst complex component 3	AK141537|Exoc3|211446|exocyst complex component 3	NM_177333|Exoc3|211446|exocyst complex component 3	AK089979|Exoc3|211446|exocyst complex component 3
mm9_v1_chr2_-_38920925_38921012	0.040532	CAGCAGG	BC043090|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	NM_029793|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK028516|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC024637|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC053068|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK002954|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK008972|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK044987|Golga1|76899|golgi autoantigen, golgin subfamily a, 1
mm9_v1_chr14_+_21493519_21493615	0.0399466	CAGCAGG	AK036519|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_001168273|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_172596|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK011880|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK122199|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	BC040370|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)
mm9_v1_chrX_-_7182450_7182545	0.0397059	CAGCAGG	BC011195|Ccdc22|54638|coiled-coil domain containing 22	AK010536|Ccdc22|54638|coiled-coil domain containing 22	AF229637|Ccdc22|54638|coiled-coil domain containing 22	AK039573|Ccdc22|54638|coiled-coil domain containing 22	NM_138603|Ccdc22|54638|coiled-coil domain containing 22
mm9_v1_chr9_+_32031833_32031859	0.0395944	CAGCAGG	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr16_-_10447440_10447456	0.0395054	CAGCAGG	BC068110|Fam18a|383103|family with sequence similarity 18, member A	NM_001013778|Fam18a|383103|family with sequence similarity 18, member A
mm9_v1_chr2_+_163820920_163821078	0.0391192	CAGCAGG	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr2_+_118727248_118727453	0.0385593	CAGCAGG	NM_001045523|Bahd1|228536|bromo adjacent homology domain containing 1	AK152597|Bahd1|228536|bromo adjacent homology domain containing 1
mm9_v1_chr2_-_146337646_146337787	0.0383797	CAGCAGG	AK038838|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151040|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151041|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	AK157932|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	NM_001033348|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm9_v1_chr19_+_42056244_42056262	0.0382165	CAGCAGG	NM_145500|Ubtd1|226122|ubiquitin domain containing 1	AK078479|Ubtd1|226122|ubiquitin domain containing 1
mm9_v1_chr5_-_64360058_64360140	0.0375473	CAGCAGG	AK133845|Rell1|100532|RELT-like 1	AK159944|Rell1|100532|RELT-like 1	AK161061|Rell1|100532|RELT-like 1	BC031198|Rell1|100532|RELT-like 1	BC066137|Rell1|100532|RELT-like 1	BC066160|Rell1|100532|RELT-like 1	AK140108|Rell1|100532|RELT-like 1	NM_145923|Rell1|100532|RELT-like 1
mm9_v1_chr4_+_128365981_128366038	0.0373666	CAGCAGG	NM_018774|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC057571|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr10_+_127774872_127774973	0.0369728	CAGCAGG	BC013554|Cs|12974|citrate synthase	BC029754|Cs|12974|citrate synthase	NM_026444|Cs|12974|citrate synthase	AB056479|Cs|12974|citrate synthase
mm9_v1_chr9_-_110310638_110310737	0.0365795	CAGCAGG	NM_001081043|Ptpn23|104831|protein tyrosine phosphatase, non-receptor type 23
mm9_v1_chr8_-_113551636_113551700	0.0346262	CAGCAGG	AK147499|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	AK013362|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190800|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_172284|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr2_+_28368603_28368686	0.0342677	CAGCAGG	NM_001145834|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_009058|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr7_-_106976715_106976926	0.0338177	CAGCAGG	BC116892|Neu3|50877|neuraminidase 3	BC116924|Neu3|50877|neuraminidase 3	AK050428|Neu3|50877|neuraminidase 3	AK134405|Neu3|50877|neuraminidase 3	AB026842|Neu3|50877|neuraminidase 3	NM_016720|Neu3|50877|neuraminidase 3
mm9_v1_chr11_+_100931369_100931476	0.03367	CAGCAGG	AK143546|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	NM_013792|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK170758|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK158045|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK164125|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	BC055733|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	U85247|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
mm9_v1_chr7_+_19868009_19868016	0.0334636	CAGCAGG	AK144271|Rtn2|20167|reticulon 2 (Z-band associated protein)	BC031370|Rtn2|20167|reticulon 2 (Z-band associated protein)	NM_013648|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038538|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr4_-_135528494_135528534	0.0328839	CAGCAGG	AK167478|Lypla2|26394|lysophospholipase 2	AK089112|Lypla2|26394|lysophospholipase 2	AK075590|Lypla2|26394|lysophospholipase 2	AB009653|Lypla2|26394|lysophospholipase 2	NM_011942|Lypla2|26394|lysophospholipase 2	BC068120|Lypla2|26394|lysophospholipase 2
mm9_v1_chr17_+_68623136_68623166	0.0327792	CAGCAGG	AK053068|L3mbtl4|320858|l(3)mbt-like 4 (Drosophila)	NM_177278|L3mbtl4|320858|l(3)mbt-like 4 (Drosophila)	AK039470|L3mbtl4|320858|l(3)mbt-like 4 (Drosophila)
mm9_v1_chr1_-_36426005_36426027	0.0326986	CAGCAGG	AK030079|4632411B12Rik|226976|RIKEN cDNA 4632411B12 gene	NM_172652|4632411B12Rik|226976|RIKEN cDNA 4632411B12 gene
mm9_v1_chr1_-_193220824_193220968	0.0325147	CAGCAGG	AK145397|Ppp2r5a|226849|protein phosphatase 2, regulatory subunit B (B56), alpha isoform	BC059026|Ppp2r5a|226849|protein phosphatase 2, regulatory subunit B (B56), alpha isoform	NM_144880|Ppp2r5a|226849|protein phosphatase 2, regulatory subunit B (B56), alpha isoform
mm9_v1_chr3_-_135354500_135354532	0.0323192	CAGCAGG	BC050841|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105	NM_008689|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr4_+_154865439_154865649	0.0321388	CAGCAGG	NM_001160016|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_001160017|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_008142|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK156101|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	BC013058|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK163844|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr14_-_32390502_32390568	0.0312551	CAGCAGG	BC107386|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	BC107387|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AK134212|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	NM_009937|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm9_v1_chr11_+_75465000_75465105	0.0308957	CAGCAGG	NM_008659|Myo1c|17913|myosin IC	AK155530|Myo1c|17913|myosin IC	X99638|Myo1c|17913|myosin IC	BC021481|Myo1c|17913|myosin IC	AK004743|Myo1c|17913|myosin IC
mm9_v1_chr10_-_80477630_80477676	0.0305224	CAGCAGG	AK147843|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	AK141541|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	AK177829|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	AY035844|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	NM_010319|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7
mm9_v1_chr9_+_44863270_44863299	0.0302875	CAGCAGG	AK041037|Mpzl3|319742|myelin protein zero-like 3	NM_176993|Mpzl3|319742|myelin protein zero-like 3	AK049878|Mpzl3|319742|myelin protein zero-like 3	BC132150|Mpzl3|319742|myelin protein zero-like 3	EF102773|Mpzl3|319742|myelin protein zero-like 3	NM_001093749|Mpzl3|319742|myelin protein zero-like 3
mm9_v1_chr17_+_56396215_56396281	0.0299013	CAGCAGG	NM_010192|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK129000|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK147879|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK155363|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK034412|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK080978|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC054382|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC009161|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK005041|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC110669|Fem1a|14154|feminization 1 homolog a (C. elegans)
mm9_v1_chr2_-_25978328_25978339	0.0296688	CAGCAGG	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr2_-_65076584_65076777	0.0285599	CAGCAGG	AK052533|Cobll1|319876|Cobl-like 1	AK144943|Cobll1|319876|Cobl-like 1	AY308746|Cobll1|319876|Cobl-like 1	BC067007|Cobll1|319876|Cobl-like 1	NM_027225|Cobll1|319876|Cobl-like 1	NM_177025|Cobll1|319876|Cobl-like 1	AK037010|Cobll1|319876|Cobl-like 1
mm9_v1_chr15_+_101904203_101904238	0.0274539	CAGCAGG	NM_145625|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr12_-_88488851_88488917	0.0273592	CAGCAGG	AK076813|Pomt2|217734|protein-O-mannosyltransferase 2	AY090481|Pomt2|217734|protein-O-mannosyltransferase 2	NM_153415|Pomt2|217734|protein-O-mannosyltransferase 2	AK085703|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr5_-_115108377_115108429	0.026806	CAGCAGG	BC127052|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AF208026|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AK083223|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AF279672|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AK002735|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	NM_022017|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4
mm9_v1_chr15_-_74539748_74539751	0.0264194	CAGCAGG	AK168885|Jrk|16469|jerky	NM_008415|Jrk|16469|jerky
mm9_v1_chr11_+_115761444_115761621	0.0253254	CAGCAGG	NM_183259|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK020450|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK004370|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	BC065414|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene
mm9_v1_chr17_+_70911084_70911126	0.0250012	CAGCAGG	NM_001128181|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK136926|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr4_-_107973683_107973743	0.0248234	CAGCAGG	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr11_+_72609717_72609729	0.0241956	CAGCAGG	AK158924|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1	NM_001045536|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1
mm9_v1_chr6_-_97129076_97129149	0.0224553	CAGCAGG	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr5_-_134652558_134652645	0.0223205	CAGCAGG	AK005040|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	BC024714|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	AF410456|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	BC055335|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	AK017733|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	NM_033572|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)
mm9_v1_chr2_+_69561103_69561149	0.0214585	CAGCAGG	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr2_-_25402396_25402454	0.0213558	CAGCAGG	AK151653|Traf2|22030|TNF receptor-associated factor 2	L35303|Traf2|22030|TNF receptor-associated factor 2	AK159585|Traf2|22030|TNF receptor-associated factor 2	AK038136|Traf2|22030|TNF receptor-associated factor 2	AK052934|Traf2|22030|TNF receptor-associated factor 2	NM_009422|Traf2|22030|TNF receptor-associated factor 2	AK152174|Traf2|22030|TNF receptor-associated factor 2	AK159581|Traf2|22030|TNF receptor-associated factor 2
mm9_v1_chr7_-_50745358_50745392	0.0207004	CAGCAGG	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr12_-_85534964_85534979	0.0199707	CAGCAGG	AK155547|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK171272|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163502|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK081554|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chrX_+_97170927_97171053	0.019886	CAGCAGG	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr2_-_164008333_164008477	0.0193018	CAGCAGG	AK075896|Wfdc5|209232|WAP four-disulfide core domain 5	AK131906|Wfdc5|209232|WAP four-disulfide core domain 5	AK131905|Wfdc5|209232|WAP four-disulfide core domain 5	AY669505|Wfdc5|209232|WAP four-disulfide core domain 5	BC019734|Wfdc5|209232|WAP four-disulfide core domain 5	NM_145369|Wfdc5|209232|WAP four-disulfide core domain 5
mm9_v1_chr2_-_32306938_32306989	0.0192813	CAGCAGG	BC037109|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK132204|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK082756|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK049392|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164357|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_146118|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr15_+_101004502_101004580	0.0192497	CAGCAGG	BC145775|Acvr1b|11479|activin A receptor, type 1B	BC145777|Acvr1b|11479|activin A receptor, type 1B	AK154578|Acvr1b|11479|activin A receptor, type 1B	AK157910|Acvr1b|11479|activin A receptor, type 1B	NM_007395|Acvr1b|11479|activin A receptor, type 1B	BC059832|Acvr1b|11479|activin A receptor, type 1B	Z31663|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr5_+_108026391_108026398	0.0190942	CAGCAGG	AK049889|Rpap2|231571|RNA polymerase II associated protein 2	NM_001163462|Rpap2|231571|RNA polymerase II associated protein 2
mm9_v1_chr5_-_49280703_49280795	0.0190573	CAGCAGG	AF453243|Kcnip4|80334|Kv channel interacting protein 4	AK165773|Kcnip4|80334|Kv channel interacting protein 4	AK049662|Kcnip4|80334|Kv channel interacting protein 4	DQ148503|Kcnip4|80334|Kv channel interacting protein 4	AK039048|Kcnip4|80334|Kv channel interacting protein 4	NM_030265|Kcnip4|80334|Kv channel interacting protein 4
mm9_v1_chr9_+_110921791_110921833	0.0189508	CAGCAGG	AK036491|Ltf|17002|lactotransferrin	AK144556|Ltf|17002|lactotransferrin	AK150799|Ltf|17002|lactotransferrin	AK151822|Ltf|17002|lactotransferrin	AK164781|Ltf|17002|lactotransferrin	D88510|Ltf|17002|lactotransferrin	NM_008522|Ltf|17002|lactotransferrin	BC008530|Ltf|17002|lactotransferrin	AY792500|Ltf|17002|lactotransferrin	CT010339|Ltf|17002|lactotransferrin	FJ538998|Ltf|17002|lactotransferrin	J03298|Ltf|17002|lactotransferrin
mm9_v1_chr14_-_122097583_122097657	0.0186702	CAGCAGG	BC157964|Dock9|105445|dedicator of cytokinesis 9	NM_001081039|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr11_+_101309725_101309821	0.018559	CAGCAGG	AK131884|Ifi35|70110|interferon-induced protein 35	NM_027320|Ifi35|70110|interferon-induced protein 35	AK008161|Ifi35|70110|interferon-induced protein 35	BC008158|Ifi35|70110|interferon-induced protein 35
mm9_v1_chr16_-_19983049_19983121	0.0182133	CAGCAGG	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr17_+_33130067_33130141	0.0167844	CAGCAGG	AK050612|Zfp952|240067|zinc finger protein 952	BC057593|Zfp952|240067|zinc finger protein 952	NM_001045559|Zfp952|240067|zinc finger protein 952	BC051011|Zfp952|240067|zinc finger protein 952
mm9_v1_chr7_-_54051250_54051427	0.0161508	CAGCAGG	BC082542|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005247|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005248|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001167864|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	BC046443|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)
mm9_v1_chr7_+_24897332_24897378	0.0160546	CAGCAGG	AF167319|Zfp112|57745|zinc finger protein 112	NM_021307|Zfp112|57745|zinc finger protein 112	BC120886|Zfp112|57745|zinc finger protein 112
mm9_v1_chr5_-_44617844_44617920	0.0159099	CAGCAGG	NM_173764|Tapt1|231225|transmembrane anterior posterior transformation 1
mm9_v1_chr12_-_84938095_84938119	0.0158784	CAGCAGG	AK170954|Zfyve1|217695|zinc finger, FYVE domain containing 1	NM_183154|Zfyve1|217695|zinc finger, FYVE domain containing 1	AK139825|Zfyve1|217695|zinc finger, FYVE domain containing 1
mm9_v1_chr14_-_70205351_70205356	0.0157139	CAGCAGG	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr8_-_122159431_122159579	0.0156435	CAGCAGG	BC043936|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4	NM_025734|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4
mm9_v1_chr8_-_73380865_73380911	0.0155812	CAGCAGG	AF357239|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AK043611|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AK041033|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	NM_032397|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	AF303463|Kcnn1|84036|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
mm9_v1_chr8_-_4275880_4275909	0.0155106	CAGCAGG	BC023454|Timm44|21856|translocase of inner mitochondrial membrane 44	BC043479|Timm44|21856|translocase of inner mitochondrial membrane 44	BC117523|Timm44|21856|translocase of inner mitochondrial membrane 44	BC117524|Timm44|21856|translocase of inner mitochondrial membrane 44	U69898|Timm44|21856|translocase of inner mitochondrial membrane 44	BC110677|Timm44|21856|translocase of inner mitochondrial membrane 44	NM_011592|Timm44|21856|translocase of inner mitochondrial membrane 44	AK153866|Timm44|21856|translocase of inner mitochondrial membrane 44
mm9_v1_chr4_-_147278927_147279021	0.0154101	CAGCAGG	NM_133201|Mfn2|170731|mitofusin 2
mm9_v1_chr1_+_171859069_171859069	0.0150996	CAGCAGG	AK141447|1700084C01Rik|78465|RIKEN cDNA 1700084C01 gene	NM_001033185|1700084C01Rik|78465|RIKEN cDNA 1700084C01 gene
mm9_v1_chr5_+_136293975_136293975	0.0148358	CAGCAGG	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr4_+_137773045_137773112	0.0147073	CAGCAGG	NM_001122897|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr18_+_80451983_80452066	0.0143584	CAGCAGG	NM_001164420|Pqlc1|66943|PQ loop repeat containing 1	AK153023|Pqlc1|66943|PQ loop repeat containing 1	AK153176|Pqlc1|66943|PQ loop repeat containing 1
mm9_v1_chr3_-_108029499_108029565	0.0142144	CAGCAGG	BC030038|Sypl2|17306|synaptophysin-like 2	AB010140|Sypl2|17306|synaptophysin-like 2	NM_008596|Sypl2|17306|synaptophysin-like 2	AK082471|Sypl2|17306|synaptophysin-like 2	AK162663|Sypl2|17306|synaptophysin-like 2	AK052749|Sypl2|17306|synaptophysin-like 2	AK083422|Sypl2|17306|synaptophysin-like 2
mm9_v1_chr7_+_26682681_26682715	0.0141609	CAGCAGG	BC060973|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	NM_009999|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	AF128849|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	M21856|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	X99715|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10
mm9_v1_chr10_+_85061155_85061265	0.0124045	CAGCAGG	NM_001017525|Btbd11|74007|BTB (POZ) domain containing 11	AK044022|Btbd11|74007|BTB (POZ) domain containing 11
mm9_v1_chr1_-_127808790_127808807	0.0122453	CAGCAGG	AB041649|Lypd1|72585|Ly6/Plaur domain containing 1	AK045592|Lypd1|72585|Ly6/Plaur domain containing 1	NM_145100|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr18_+_37089837_37089938	0.0119892	CAGCAGG	BC082326|Pcdha1|116731|protocadherin alpha 1	AY013756|Pcdha1|116731|protocadherin alpha 1	NM_054072|Pcdha1|116731|protocadherin alpha 1
mm9_v1_chr9_+_43892984_43893007	0.0118763	CAGCAGG	NM_198091|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr11_+_102254699_102254799	0.0116428	CAGCAGG	NM_016759|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr3_-_92261456_92261538	0.0115581	CAGCAGG	NM_011478|Sprr3|20766|small proline-rich protein 3	BC125629|Sprr3|20766|small proline-rich protein 3
mm9_v1_chr18_-_35658485_35658600	0.0114897	CAGCAGG	BC028488|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AJ297884|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AK170415|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016466|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016119|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	NM_030749|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm9_v1_chr2_+_164311639_164311740	0.011383	CAGCAGG	NM_001048227|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr13_-_55464135_55464143	0.0112619	CAGCAGG	BC055327|Lman2|66890|lectin, mannose-binding 2	NM_025828|Lman2|66890|lectin, mannose-binding 2
mm9_v1_chr8_-_73030573_73030639	0.0109956	CAGCAGG	AK160511|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene	AK010635|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene	AK013181|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene	NM_025577|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene
mm9_v1_chr5_+_36100508_36100541	0.0105425	CAGCAGG	AK154494|Ablim2|231148|actin-binding LIM protein 2	NM_001177696|Ablim2|231148|actin-binding LIM protein 2	NM_001177697|Ablim2|231148|actin-binding LIM protein 2	NM_001177698|Ablim2|231148|actin-binding LIM protein 2	NM_001177699|Ablim2|231148|actin-binding LIM protein 2	NM_001177700|Ablim2|231148|actin-binding LIM protein 2	NM_177678|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr6_+_8159188_8159393	0.0100751	CAGCAGG	NM_145374|Mios|252875|missing oocyte, meiosis regulator, homolog (Drosophila)	BC020002|Mios|252875|missing oocyte, meiosis regulator, homolog (Drosophila)
mm9_v1_chr7_+_30553570_30553676	0.0100391	CAGCAGG	AK145426|Zfp84|74352|zinc finger protein 84	NM_023750|Zfp84|74352|zinc finger protein 84	AK014610|Zfp84|74352|zinc finger protein 84	AK158422|Zfp84|74352|zinc finger protein 84	BC008540|Zfp84|74352|zinc finger protein 84	AK046223|Zfp84|74352|zinc finger protein 84	AK083748|Zfp84|74352|zinc finger protein 84	AK034259|Zfp84|74352|zinc finger protein 84
mm9_v1_chr10_-_18506598_18506598	0.00983459	CAGCAGG	AK030207|Gm4922|237300|predicted gene 4922	NM_177706|Gm4922|237300|predicted gene 4922
mm9_v1_chr9_+_32503600_32503674	0.00974925	CAGCAGG	NM_001038642|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	NM_011808|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	BC010588|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK168247|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain
mm9_v1_chr17_-_79135885_79135936	0.00962627	CAGCAGG	BC090968|Strn|268980|striatin, calmodulin binding protein	NM_011500|Strn|268980|striatin, calmodulin binding protein	AK051549|Strn|268980|striatin, calmodulin binding protein
mm9_v1_chr1_-_182186429_182186434	0.0083618	CAGCAGG	AK148111|Psen2|19165|presenilin 2	NM_001128605|Psen2|19165|presenilin 2
mm9_v1_chrX_+_99044723_99044723	0.00781529	CAGCAGG	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr19_-_4397075_4397085	0.00779946	CAGCAGG	AK037157|Kdm2a|225876|lysine (K)-specific demethylase 2A	AK161980|Kdm2a|225876|lysine (K)-specific demethylase 2A	NM_001001984|Kdm2a|225876|lysine (K)-specific demethylase 2A	AK155866|Kdm2a|225876|lysine (K)-specific demethylase 2A
mm9_v1_chr11_-_100711785_100712037	0.00716198	CAGCAGG	Z48539|Stat5b|20851|signal transducer and activator of transcription 5B	BC024319|Stat5b|20851|signal transducer and activator of transcription 5B	AK154664|Stat5b|20851|signal transducer and activator of transcription 5B	AK150098|Stat5b|20851|signal transducer and activator of transcription 5B	NM_001113563|Stat5b|20851|signal transducer and activator of transcription 5B	AK045531|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr1_-_59030272_59030346	0.00671184	CAGCAGG	AK036650|Trak2|70827|trafficking protein, kinesin binding 2	AK048261|Trak2|70827|trafficking protein, kinesin binding 2	AK014647|Trak2|70827|trafficking protein, kinesin binding 2	NM_172406|Trak2|70827|trafficking protein, kinesin binding 2
mm9_v1_chr17_+_24987429_24987437	0.00556284	CAGCAGG	NM_024284|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr4_+_128867038_128867085	0.00461158	CAGCAGG	NM_134151|Yars|107271|tyrosyl-tRNA synthetase
mm9_v1_chr11_+_83116148_83116241	0.00456348	CAGCAGG	AK138434|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_001035854|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_027915|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK030505|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	BC046772|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK032617|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit
mm9_v1_chr7_-_74790088_74790121	0.00405583	CAGCAGG	AK004904|Lrrc28|67867|leucine rich repeat containing 28	AK008713|Lrrc28|67867|leucine rich repeat containing 28	AK159417|Lrrc28|67867|leucine rich repeat containing 28	AK050154|Lrrc28|67867|leucine rich repeat containing 28	AK077270|Lrrc28|67867|leucine rich repeat containing 28	NM_027413|Lrrc28|67867|leucine rich repeat containing 28	NM_175124|Lrrc28|67867|leucine rich repeat containing 28
mm9_v1_chr2_-_127308234_127308234	0.00379809	CAGCAGG	DQ148500|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_001111331|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr5_+_28643698_28643741	0.00335613	CAGCAGG	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chr3_-_103594950_103595238	0.00271024	CAGCAGG	BC145697|Hipk1|15257|homeodomain interacting protein kinase 1	BC145699|Hipk1|15257|homeodomain interacting protein kinase 1	AF170303|Hipk1|15257|homeodomain interacting protein kinase 1	AF170304|Hipk1|15257|homeodomain interacting protein kinase 1	AF077658|Hipk1|15257|homeodomain interacting protein kinase 1	AK134408|Hipk1|15257|homeodomain interacting protein kinase 1	NM_010432|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr17_+_23940151_23940238	0.00222742	CAGCAGG	AK171001|Srrm2|75956|serine/arginine repetitive matrix 2	NM_175229|Srrm2|75956|serine/arginine repetitive matrix 2	BC019803|Srrm2|75956|serine/arginine repetitive matrix 2	AK090123|Srrm2|75956|serine/arginine repetitive matrix 2	BC092355|Srrm2|75956|serine/arginine repetitive matrix 2	BC037186|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr11_+_60230646_60230770	0.0011855	CAGCAGG	AK017120|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	NM_025757|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK039435|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr8_+_59029896_59029998	0.000685204	CAGCAGG	AK077595|Fbxo8|50753|F-box protein 8	AK078111|Fbxo8|50753|F-box protein 8	AK012401|Fbxo8|50753|F-box protein 8	AK147748|Fbxo8|50753|F-box protein 8	AK162592|Fbxo8|50753|F-box protein 8	AK002538|Fbxo8|50753|F-box protein 8	BC011100|Fbxo8|50753|F-box protein 8	AF176527|Fbxo8|50753|F-box protein 8	AK029989|Fbxo8|50753|F-box protein 8	NM_015791|Fbxo8|50753|F-box protein 8	AK160145|Fbxo8|50753|F-box protein 8	BC034854|Fbxo8|50753|F-box protein 8
mm9_v1_chr7_+_120909509_120909519	0.00067633	CAGCAGG	NM_145584|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr15_-_77759356_77759437	0.000246962	CAGCAGG	AK167925|Txn2|56551|thioredoxin 2	U85089|Txn2|56551|thioredoxin 2	AK167754|Txn2|56551|thioredoxin 2	AK168322|Txn2|56551|thioredoxin 2	AK002358|Txn2|56551|thioredoxin 2	AK147164|Txn2|56551|thioredoxin 2	AK090199|Txn2|56551|thioredoxin 2	AK149855|Txn2|56551|thioredoxin 2	BC068182|Txn2|56551|thioredoxin 2	AK010917|Txn2|56551|thioredoxin 2	NM_019913|Txn2|56551|thioredoxin 2	AK160591|Txn2|56551|thioredoxin 2
