mm9_v1_chr8_+_13159279_13159395	14.415	bHLH_family.p2	M25244|Lamp1|16783|lysosomal-associated membrane protein 1	AK159376|Lamp1|16783|lysosomal-associated membrane protein 1	M32015|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr15_-_78236262_78236306	13.6781	bHLH_family.p2	CT010210|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	U35741|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	BC005644|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	NM_009437|Tst|22117|thiosulfate sulfurtransferase, mitochondrial	AK003953|Tst|22117|thiosulfate sulfurtransferase, mitochondrial
mm9_v1_chr1_-_75215798_75215828	13.4552	bHLH_family.p2	M13444|Tuba4a|22145|tubulin, alpha 4A	BC019959|Tuba4a|22145|tubulin, alpha 4A	AK002427|Tuba4a|22145|tubulin, alpha 4A	AK078355|Tuba4a|22145|tubulin, alpha 4A	NM_009447|Tuba4a|22145|tubulin, alpha 4A
mm9_v1_chr17_-_45732442_45732540	11.6525	bHLH_family.p2	AK218485|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK180131|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK180168|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK183203|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK191284|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK197634|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK200370|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK205425|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK205461|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK206588|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK149483|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK170463|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK004756|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr3_+_104442568_104442606	11.6281	bHLH_family.p2	AK033516|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK079379|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK088762|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK161701|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK162682|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AK166606|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	NM_009196|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	BC014777|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1	AF058055|Slc16a1|20501|solute carrier family 16 (monocarboxylic acid transporters), member 1
mm9_v1_chr8_-_3624988_3625048	9.06708	bHLH_family.p2	AK003002|Pcp2|18545|Purkinje cell protein 2 (L7)	AK160398|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129804|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr7_+_3303657_3303670	8.57417	bHLH_family.p2	AK144419|Prkcc|18752|protein kinase C, gamma	NM_011102|Prkcc|18752|protein kinase C, gamma
mm9_v1_chr5_+_137506122_137506164	8.30452	bHLH_family.p2	NM_001039385|Vgf|381677|VGF nerve growth factor inducible
mm9_v1_chr10_+_122115755_122115904	8.15978	bHLH_family.p2	AK043121|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_001110218|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_176919|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK040207|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK077422|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK134804|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK051434|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK220260|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr4_+_15808409_15808487	7.62146	bHLH_family.p2	AK002635|Calb1|12307|calbindin 1	AK005081|Calb1|12307|calbindin 1	AK005243|Calb1|12307|calbindin 1	AK028050|Calb1|12307|calbindin 1	AK038856|Calb1|12307|calbindin 1	AK048517|Calb1|12307|calbindin 1	AK077499|Calb1|12307|calbindin 1	NM_009788|Calb1|12307|calbindin 1	AK028327|Calb1|12307|calbindin 1	AK078358|Calb1|12307|calbindin 1	M21531|Calb1|12307|calbindin 1	BC016421|Calb1|12307|calbindin 1
mm9_v1_chr8_-_3625251_3625286	6.73404	bHLH_family.p2	M21532|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_008790|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr11_+_53333270_53333474	6.26779	bHLH_family.p2	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr8_-_89996089_89996284	6.08271	bHLH_family.p2	AK161846|Cbln1|12404|cerebellin 1 precursor protein	BC051956|Cbln1|12404|cerebellin 1 precursor protein	BC055730|Cbln1|12404|cerebellin 1 precursor protein	BC132120|Cbln1|12404|cerebellin 1 precursor protein	BC132122|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr7_-_152125661_152125812	6.0475	bHLH_family.p2	AK170833|Ccnd1|12443|cyclin D1	BC060172|Ccnd1|12443|cyclin D1	BC044841|Ccnd1|12443|cyclin D1	AK149905|Ccnd1|12443|cyclin D1	S78355|Ccnd1|12443|cyclin D1	AK053348|Ccnd1|12443|cyclin D1	AK164997|Ccnd1|12443|cyclin D1	M64403|Ccnd1|12443|cyclin D1	AK017834|Ccnd1|12443|cyclin D1
mm9_v1_chr5_-_77524256_77524291	5.82628	bHLH_family.p2	AK008297|Hopx|74318|HOP homeobox	AK008439|Hopx|74318|HOP homeobox	BC024546|Hopx|74318|HOP homeobox	AF492704|Hopx|74318|HOP homeobox	AK003784|Hopx|74318|HOP homeobox	NM_001159900|Hopx|74318|HOP homeobox	NM_001159901|Hopx|74318|HOP homeobox
mm9_v1_chr19_+_4510471_4510550	5.57345	bHLH_family.p2	NM_001162946|Pcx|18563|pyruvate carboxylase	AK170596|Pcx|18563|pyruvate carboxylase	AK170871|Pcx|18563|pyruvate carboxylase	AK148328|Pcx|18563|pyruvate carboxylase	BC055030|Pcx|18563|pyruvate carboxylase	AK128927|Pcx|18563|pyruvate carboxylase	AK172320|Pcx|18563|pyruvate carboxylase
mm9_v1_chr11_+_117670970_117671053	5.56571	bHLH_family.p2	NM_009304|Syngr2|20973|synaptogyrin 2	AK150234|Syngr2|20973|synaptogyrin 2	AK170681|Syngr2|20973|synaptogyrin 2	AF151985|Syngr2|20973|synaptogyrin 2	BC004829|Syngr2|20973|synaptogyrin 2	AF364049|Syngr2|20973|synaptogyrin 2	AK157343|Syngr2|20973|synaptogyrin 2	AJ002307|Syngr2|20973|synaptogyrin 2
mm9_v1_chr17_-_27075896_27076239	5.55824	bHLH_family.p2	AK181681|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK187338|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC037500|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC021463|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr8_+_13159112_13159277	5.36468	bHLH_family.p2	NM_010684|Lamp1|16783|lysosomal-associated membrane protein 1	BC049097|Lamp1|16783|lysosomal-associated membrane protein 1	AY069968|Lamp1|16783|lysosomal-associated membrane protein 1	AK172007|Lamp1|16783|lysosomal-associated membrane protein 1	AK159096|Lamp1|16783|lysosomal-associated membrane protein 1	AK004637|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr19_+_10092665_10092824	5.30944	bHLH_family.p2	NM_144538|Rab3il1|74760|RAB3A interacting protein (rabin3)-like 1	AK004767|Rab3il1|74760|RAB3A interacting protein (rabin3)-like 1	BC020147|Rab3il1|74760|RAB3A interacting protein (rabin3)-like 1
mm9_v1_chr11_-_54846882_54846976	5.15989	bHLH_family.p2	AK161625|Anxa6|11749|annexin A6	AK010342|Anxa6|11749|annexin A6	BC005595|Anxa6|11749|annexin A6	AK077843|Anxa6|11749|annexin A6	AK013026|Anxa6|11749|annexin A6	AK030728|Anxa6|11749|annexin A6	AK150035|Anxa6|11749|annexin A6	AK203372|Anxa6|11749|annexin A6	AK179628|Anxa6|11749|annexin A6	AK147066|Anxa6|11749|annexin A6	AK160754|Anxa6|11749|annexin A6	AK146509|Anxa6|11749|annexin A6	AK146592|Anxa6|11749|annexin A6	AK154101|Anxa6|11749|annexin A6	AK087941|Anxa6|11749|annexin A6	AK169774|Anxa6|11749|annexin A6	NM_001110211|Anxa6|11749|annexin A6	NM_013472|Anxa6|11749|annexin A6
mm9_v1_chr10_+_122116066_122116255	5.0126	bHLH_family.p2	AK040194|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK029461|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK150309|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr6_-_125444722_125444810	4.93747	bHLH_family.p2	AK151619|Cd9|12527|CD9 antigen	AK170310|Cd9|12527|CD9 antigen	AK151443|Cd9|12527|CD9 antigen	BC070474|Cd9|12527|CD9 antigen	NM_007657|Cd9|12527|CD9 antigen	AK002251|Cd9|12527|CD9 antigen	AK012793|Cd9|12527|CD9 antigen
mm9_v1_chr11_-_60624592_60624671	4.87955	bHLH_family.p2	AF237702|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	X94478|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	X94479|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	BC026055|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	AK132342|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)	AK010439|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)
mm9_v1_chr15_+_38908403_38908501	4.82494	bHLH_family.p2	AK090258|Cthrc1|68588|collagen triple helix repeat containing 1	AK076498|Cthrc1|68588|collagen triple helix repeat containing 1	AK151282|Cthrc1|68588|collagen triple helix repeat containing 1	NM_026778|Cthrc1|68588|collagen triple helix repeat containing 1	AK003674|Cthrc1|68588|collagen triple helix repeat containing 1	BC131907|Cthrc1|68588|collagen triple helix repeat containing 1	BC144745|Cthrc1|68588|collagen triple helix repeat containing 1
mm9_v1_chr10_+_79317316_79317391	4.66769	bHLH_family.p2	AK151292|Ptbp1|19205|polypyrimidine tract binding protein 1	AK153561|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_001077363|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_008956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK163274|Ptbp1|19205|polypyrimidine tract binding protein 1	BC007472|Ptbp1|19205|polypyrimidine tract binding protein 1	AK082600|Ptbp1|19205|polypyrimidine tract binding protein 1	AK150840|Ptbp1|19205|polypyrimidine tract binding protein 1	AK168392|Ptbp1|19205|polypyrimidine tract binding protein 1	AK037607|Ptbp1|19205|polypyrimidine tract binding protein 1	AK172712|Ptbp1|19205|polypyrimidine tract binding protein 1	AK044956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK043824|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr2_+_31742800_31742863	4.6671	bHLH_family.p2	BC096366|Lamc3|23928|laminin gamma 3	NM_011836|Lamc3|23928|laminin gamma 3	AF079520|Lamc3|23928|laminin gamma 3	AF083372|Lamc3|23928|laminin gamma 3
mm9_v1_chr17_-_27076365_27076517	4.65451	bHLH_family.p2	AK007580|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK007912|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK145185|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC024422|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC028531|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026307|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003381|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026948|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003647|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK004197|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK159336|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK002828|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK012608|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr10_+_56097078_56097350	4.59369	bHLH_family.p2	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr17_-_25707599_25707638	4.5719	bHLH_family.p2	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr7_+_108496574_108496658	4.55793	bHLH_family.p2	AK172210|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	NM_001040111|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	AK137455|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	AK140646|Arap1|69710|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm9_v1_chr6_+_116288075_116288140	4.48614	bHLH_family.p2	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr1_-_136131399_136131572	4.47763	bHLH_family.p2	AK134709|Adora1|11539|adenosine A1 receptor	AK134553|Adora1|11539|adenosine A1 receptor	AK045729|Adora1|11539|adenosine A1 receptor
mm9_v1_chr11_-_69734369_69734464	4.23437	bHLH_family.p2	AY129328|Eif5a|276770|eukaryotic translation initiation factor 5A	AY129329|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166592|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166594|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr14_-_19071459_19071620	4.21264	bHLH_family.p2	BC096461|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	AK079075|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	AK054522|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	U12142|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2	NM_011584|Nr1d2|353187|nuclear receptor subfamily 1, group D, member 2
mm9_v1_chr17_+_45700882_45700945	4.19753	bHLH_family.p2	AK155551|Slc35b2|73836|solute carrier family 35, member B2	AK144403|Slc35b2|73836|solute carrier family 35, member B2	AK003377|Slc35b2|73836|solute carrier family 35, member B2	AK090329|Slc35b2|73836|solute carrier family 35, member B2	AK152362|Slc35b2|73836|solute carrier family 35, member B2	BC025875|Slc35b2|73836|solute carrier family 35, member B2	BC036992|Slc35b2|73836|solute carrier family 35, member B2	AF414190|Slc35b2|73836|solute carrier family 35, member B2	AK154868|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr10_+_128346900_128347000	4.12882	bHLH_family.p2	NM_007653|Cd63|12512|CD63 antigen	AK150647|Cd63|12512|CD63 antigen	AK170344|Cd63|12512|CD63 antigen	AK146618|Cd63|12512|CD63 antigen	AK151702|Cd63|12512|CD63 antigen	AK152372|Cd63|12512|CD63 antigen	AK159875|Cd63|12512|CD63 antigen	AK163785|Cd63|12512|CD63 antigen	AK166543|Cd63|12512|CD63 antigen	AK152072|Cd63|12512|CD63 antigen	AK166766|Cd63|12512|CD63 antigen	BC008108|Cd63|12512|CD63 antigen	BC012212|Cd63|12512|CD63 antigen	D16432|Cd63|12512|CD63 antigen	AK028220|Cd63|12512|CD63 antigen	AK151963|Cd63|12512|CD63 antigen	AF159427|Cd63|12512|CD63 antigen
mm9_v1_chr16_-_22657245_22657273	3.97519	bHLH_family.p2	AK220294|Dgkg|110197|diacylglycerol kinase, gamma	AK087972|Dgkg|110197|diacylglycerol kinase, gamma	AK085470|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr13_-_94269673_94269706	3.91447	bHLH_family.p2	BC020052|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr4_+_129985957_129986021	3.83392	bHLH_family.p2	AK142156|Fabp3|14077|fatty acid binding protein 3, muscle and heart	BC089542|Fabp3|14077|fatty acid binding protein 3, muscle and heart	BC002082|Fabp3|14077|fatty acid binding protein 3, muscle and heart	X14961|Fabp3|14077|fatty acid binding protein 3, muscle and heart	NM_010174|Fabp3|14077|fatty acid binding protein 3, muscle and heart	U02883|Fabp3|14077|fatty acid binding protein 3, muscle and heart
mm9_v1_chr7_-_91234908_91235022	3.74596	bHLH_family.p2	BC116643|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	BC115873|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AB103331|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK036809|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	AK162689|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene	NM_030728|9930013L23Rik|80982|RIKEN cDNA 9930013L23 gene
mm9_v1_chr6_-_23789259_23789331	3.68695	bHLH_family.p2	AK046596|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK042634|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291949|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK163203|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	NM_153163|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291948|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291950|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr17_-_53828547_53828590	3.65023	bHLH_family.p2	AB193067|Sgol1|72415|shugoshin-like 1 (S. pombe)	AB193068|Sgol1|72415|shugoshin-like 1 (S. pombe)	AK196456|Sgol1|72415|shugoshin-like 1 (S. pombe)
mm9_v1_chr10_+_41239248_41239438	3.61652	bHLH_family.p2	AK145131|Cd164|53599|CD164 antigen	AK169275|Cd164|53599|CD164 antigen	AB028895|Cd164|53599|CD164 antigen	NM_016898|Cd164|53599|CD164 antigen	AK018009|Cd164|53599|CD164 antigen	BC005414|Cd164|53599|CD164 antigen	AB014464|Cd164|53599|CD164 antigen	AF299345|Cd164|53599|CD164 antigen	AK194033|Cd164|53599|CD164 antigen
mm9_v1_chr3_+_87710282_87710350	3.59665	bHLH_family.p2	AK017863|Hdgf|15191|hepatoma-derived growth factor	BC021654|Hdgf|15191|hepatoma-derived growth factor	BC005713|Hdgf|15191|hepatoma-derived growth factor	AF251787|Hdgf|15191|hepatoma-derived growth factor
mm9_v1_chr16_-_95219189_95219332	3.53572	bHLH_family.p2	U51125|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC120794|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC125565|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51122|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51123|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51124|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U11859|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U37253|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK139056|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025584|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025585|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_010606|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK044218|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr11_-_93816916_93817051	3.51839	bHLH_family.p2	EF437324|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK151262|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	BC086892|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	NM_001077529|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in
mm9_v1_chr4_-_25727109_25727390	3.50257	bHLH_family.p2	AK049122|Fut9|14348|fucosyltransferase 9	NM_010243|Fut9|14348|fucosyltransferase 9	AK032177|Fut9|14348|fucosyltransferase 9	AK139133|Fut9|14348|fucosyltransferase 9	AK033607|Fut9|14348|fucosyltransferase 9
mm9_v1_chr7_+_117265568_117265624	3.49177	bHLH_family.p2	NM_009516|Wee1|22390|WEE 1 homolog 1 (S. pombe)	BC006852|Wee1|22390|WEE 1 homolog 1 (S. pombe)	D30743|Wee1|22390|WEE 1 homolog 1 (S. pombe)
mm9_v1_chr19_-_10278231_10278434	3.45474	bHLH_family.p2	AK187493|Fen1|14156|flap structure specific endonuclease 1	BC010203|Fen1|14156|flap structure specific endonuclease 1	AK042942|Fen1|14156|flap structure specific endonuclease 1	AK153889|Fen1|14156|flap structure specific endonuclease 1	AK158431|Fen1|14156|flap structure specific endonuclease 1	AK166948|Fen1|14156|flap structure specific endonuclease 1	AK076977|Fen1|14156|flap structure specific endonuclease 1	AK161047|Fen1|14156|flap structure specific endonuclease 1	BC027295|Fen1|14156|flap structure specific endonuclease 1	AK078778|Fen1|14156|flap structure specific endonuclease 1	AK168731|Fen1|14156|flap structure specific endonuclease 1	AK046256|Fen1|14156|flap structure specific endonuclease 1	NM_007999|Fen1|14156|flap structure specific endonuclease 1
mm9_v1_chr1_-_17087915_17087981	3.44681	bHLH_family.p2	BC120839|Jph1|57339|junctophilin 1	BC137669|Jph1|57339|junctophilin 1
mm9_v1_chr5_-_46030523_46030852	3.3909	bHLH_family.p2	AK081567|Fam184b|58227|family with sequence similarity 184, member B	BC056379|Fam184b|58227|family with sequence similarity 184, member B	NM_021416|Fam184b|58227|family with sequence similarity 184, member B	AB257856|Fam184b|58227|family with sequence similarity 184, member B
mm9_v1_chr13_+_38436987_38437005	3.38562	bHLH_family.p2	AK041210|Bmp6|12161|bone morphogenetic protein 6
mm9_v1_chr7_+_129432810_129432849	3.35094	bHLH_family.p2	X53532|Prkcb|18751|protein kinase C, beta	BC127083|Prkcb|18751|protein kinase C, beta	X59274|Prkcb|18751|protein kinase C, beta
mm9_v1_chr1_-_155179844_155179930	3.34196	bHLH_family.p2	J02930|Lamc1|226519|laminin, gamma 1	AK144233|Lamc1|226519|laminin, gamma 1	J03484|Lamc1|226519|laminin, gamma 1	NM_010683|Lamc1|226519|laminin, gamma 1
mm9_v1_chr7_-_105509797_105509909	3.33973	bHLH_family.p2	AK035461|Tsku|244152|tsukushin	AK053973|Tsku|244152|tsukushin	AK137208|Tsku|244152|tsukushin	NM_001024619|Tsku|244152|tsukushin	NM_001168540|Tsku|244152|tsukushin	NM_001168541|Tsku|244152|tsukushin	NM_001168539|Tsku|244152|tsukushin
mm9_v1_chr3_-_95686120_95686174	3.27812	bHLH_family.p2	AK156084|Gm129|229599|predicted gene 129	AK164001|Gm129|229599|predicted gene 129	NM_001033302|Gm129|229599|predicted gene 129
mm9_v1_chr5_+_45884612_45884734	3.2749	bHLH_family.p2	BC016536|Lap3|66988|leucine aminopeptidase 3	NM_024434|Lap3|66988|leucine aminopeptidase 3	AK089023|Lap3|66988|leucine aminopeptidase 3	AF334160|Lap3|66988|leucine aminopeptidase 3	AK010502|Lap3|66988|leucine aminopeptidase 3	AK002819|Lap3|66988|leucine aminopeptidase 3	CT010237|Lap3|66988|leucine aminopeptidase 3	CT010301|Lap3|66988|leucine aminopeptidase 3	AK005334|Lap3|66988|leucine aminopeptidase 3	AK010384|Lap3|66988|leucine aminopeptidase 3	AK011604|Lap3|66988|leucine aminopeptidase 3	AK169032|Lap3|66988|leucine aminopeptidase 3	AK008600|Lap3|66988|leucine aminopeptidase 3	AK166958|Lap3|66988|leucine aminopeptidase 3
mm9_v1_chr15_+_73578771_73578842	3.2646	bHLH_family.p2	AK143702|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK172192|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK014601|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr6_+_108163089_108163111	3.23071	bHLH_family.p2	AK047719|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	AK137477|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	NM_010585|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	X15373|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr17_-_48061354_48061450	3.21003	bHLH_family.p2	BC043702|Foxp4|74123|forkhead box P4	AY135029|Foxp4|74123|forkhead box P4	BC052407|Foxp4|74123|forkhead box P4	AK004693|Foxp4|74123|forkhead box P4	AB052766|Foxp4|74123|forkhead box P4	BC023368|Foxp4|74123|forkhead box P4	AK143194|Foxp4|74123|forkhead box P4
mm9_v1_chr1_-_72920776_72921027	3.19325	bHLH_family.p2	X81583|Igfbp5|16011|insulin-like growth factor binding protein 5	BC054812|Igfbp5|16011|insulin-like growth factor binding protein 5	BC026805|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr11_+_69814046_69814322	3.16862	bHLH_family.p2	AK144001|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC092396|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC021015|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK146822|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	NM_007888|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	U24160|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC053050|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK168376|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK159895|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK050614|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)
mm9_v1_chr11_+_61298923_61298953	3.10115	bHLH_family.p2	NM_029568|Mfap4|76293|microfibrillar-associated protein 4	AK003537|Mfap4|76293|microfibrillar-associated protein 4	BC022666|Mfap4|76293|microfibrillar-associated protein 4
mm9_v1_chr10_+_122116022_122116053	3.04022	bHLH_family.p2	
mm9_v1_chr7_-_29096957_29097119	3.00932	bHLH_family.p2	AK010832|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	BC010303|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AY551342|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK088074|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK012977|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	BC037056|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK008340|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK008382|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	NM_025616|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)	AK167473|Timm50|66525|translocase of inner mitochondrial membrane 50 homolog (yeast)
mm9_v1_chr17_+_46633703_46633755	2.99951	bHLH_family.p2	BC082791|BC048355|381101|cDNA sequence BC048355	AK146723|BC048355|381101|cDNA sequence BC048355	NM_207161|BC048355|381101|cDNA sequence BC048355	BC048355|BC048355|381101|cDNA sequence BC048355	AK151589|BC048355|381101|cDNA sequence BC048355
mm9_v1_chr5_-_44492908_44492976	2.9889	bHLH_family.p2	AF026269|Prom1|19126|prominin 1	AF039663|Prom1|19126|prominin 1	NM_001163577|Prom1|19126|prominin 1	NM_008935|Prom1|19126|prominin 1
mm9_v1_chr15_+_81641869_81641976	2.96917	bHLH_family.p2	AK145125|Tef|21685|thyrotroph embryonic factor	AK154472|Tef|21685|thyrotroph embryonic factor	BC036982|Tef|21685|thyrotroph embryonic factor	AF194420|Tef|21685|thyrotroph embryonic factor	AK147965|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr10_+_125403274_125403331	2.9653	bHLH_family.p2	AK035166|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	NM_177152|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	AK137007|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	BC065142|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3	AY505341|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3
mm9_v1_chr7_-_104566013_104566047	2.96089	bHLH_family.p2	BC009165|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	NM_009381|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	AK050300|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)
mm9_v1_chr16_+_20672770_20672837	2.95099	bHLH_family.p2	AK081982|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	NM_001005331|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	NM_145941|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr17_+_53618611_53618848	2.94203	bHLH_family.p2	AK036011|Rab5a|271457|RAB5A, member RAS oncogene family	BC004842|Rab5a|271457|RAB5A, member RAS oncogene family	AK010495|Rab5a|271457|RAB5A, member RAS oncogene family	AK150405|Rab5a|271457|RAB5A, member RAS oncogene family	AK002631|Rab5a|271457|RAB5A, member RAS oncogene family	AK150296|Rab5a|271457|RAB5A, member RAS oncogene family	AK151066|Rab5a|271457|RAB5A, member RAS oncogene family	AK153131|Rab5a|271457|RAB5A, member RAS oncogene family	AK159706|Rab5a|271457|RAB5A, member RAS oncogene family	AK150346|Rab5a|271457|RAB5A, member RAS oncogene family	BC034370|Rab5a|271457|RAB5A, member RAS oncogene family	AK008198|Rab5a|271457|RAB5A, member RAS oncogene family
mm9_v1_chr18_-_15562126_15562266	2.94142	bHLH_family.p2	AK044074|Aqp4|11829|aquaporin 4	BC024526|Aqp4|11829|aquaporin 4	NM_009700|Aqp4|11829|aquaporin 4	AF469168|Aqp4|11829|aquaporin 4
mm9_v1_chr11_+_16652205_16652516	2.91201	bHLH_family.p2	AK004883|Egfr|13649|epidermal growth factor receptor	NM_007912|Egfr|13649|epidermal growth factor receptor	NM_207655|Egfr|13649|epidermal growth factor receptor	AK004944|Egfr|13649|epidermal growth factor receptor	AK004911|Egfr|13649|epidermal growth factor receptor	AK134262|Egfr|13649|epidermal growth factor receptor	AK014017|Egfr|13649|epidermal growth factor receptor	BC023729|Egfr|13649|epidermal growth factor receptor	AF124513|Egfr|13649|epidermal growth factor receptor	AF275367|Egfr|13649|epidermal growth factor receptor	X59698|Egfr|13649|epidermal growth factor receptor	AK049452|Egfr|13649|epidermal growth factor receptor	X78987|Egfr|13649|epidermal growth factor receptor	U03425|Egfr|13649|epidermal growth factor receptor	L06864|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr9_-_22193577_22193613	2.90185	bHLH_family.p2	BC027141|Anln|68743|anillin, actin binding protein
mm9_v1_chr13_-_114408704_114408818	2.8941	bHLH_family.p2	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr10_-_120913138_120913382	2.83978	bHLH_family.p2	AK167627|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AF332864|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC011511|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	NM_138956|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC071204|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AK155495|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC055023|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3
mm9_v1_chr1_+_93076578_93076656	2.83836	bHLH_family.p2	AB019046|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	AK157896|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	AF146522|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	AJ250489|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	AK165238|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	AF209904|Ramp1|51801|receptor (calcitonin) activity modifying protein 1	BC012644|Ramp1|51801|receptor (calcitonin) activity modifying protein 1
mm9_v1_chr7_+_120909680_120909687	2.83672	bHLH_family.p2	AK134774|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein	AK146506|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr6_-_131338282_131338457	2.83514	bHLH_family.p2	AF248546|Csda|56449|cold shock domain protein A	AF248547|Csda|56449|cold shock domain protein A	AF246224|Csda|56449|cold shock domain protein A	AK003145|Csda|56449|cold shock domain protein A	AK076041|Csda|56449|cold shock domain protein A	D14485|Csda|56449|cold shock domain protein A	BC048242|Csda|56449|cold shock domain protein A	BC062377|Csda|56449|cold shock domain protein A
mm9_v1_chr15_+_54402914_54402981	2.83365	bHLH_family.p2	NM_178920|Mal2|105853|mal, T-cell differentiation protein 2
mm9_v1_chr5_-_138613028_138613124	2.83234	bHLH_family.p2	BC066024|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC023232|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	BC065164|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150059|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK150066|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK154052|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK133091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK149913|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	D26091|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	NM_008568|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)	AK144980|Mcm7|17220|minichromosome maintenance deficient 7 (S. cerevisiae)
mm9_v1_chr19_+_46647881_46647921	2.82628	bHLH_family.p2	AK149277|Sfxn2|94279|sideroflexin 2	AK150722|Sfxn2|94279|sideroflexin 2	AF325261|Sfxn2|94279|sideroflexin 2
mm9_v1_chr8_-_87297283_87297318	2.80487	bHLH_family.p2	BC090626|Nfix|18032|nuclear factor I/X
mm9_v1_chrX_+_70748418_70748500	2.7743	bHLH_family.p2	AK045516|Atp2b3|320707|ATPase, Ca++ transporting, plasma membrane 3	NM_177236|Atp2b3|320707|ATPase, Ca++ transporting, plasma membrane 3	AK032322|Atp2b3|320707|ATPase, Ca++ transporting, plasma membrane 3
mm9_v1_chr8_-_72498125_72498184	2.73115	bHLH_family.p2	BC038221|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr2_-_147011990_147012137	2.71272	bHLH_family.p2	AK043561|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138159|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138160|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	U31566|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	AK141002|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_001077632|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_010919|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr19_-_3686441_3686567	2.70974	bHLH_family.p2	AF077847|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK220186|Lrp5|16973|low density lipoprotein receptor-related protein 5	BC011374|Lrp5|16973|low density lipoprotein receptor-related protein 5	BC094610|Lrp5|16973|low density lipoprotein receptor-related protein 5	AF064984|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147068|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147231|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK147330|Lrp5|16973|low density lipoprotein receptor-related protein 5	AK081025|Lrp5|16973|low density lipoprotein receptor-related protein 5	NM_008513|Lrp5|16973|low density lipoprotein receptor-related protein 5
mm9_v1_chr14_+_35124004_35124021	2.70701	bHLH_family.p2	AK075971|Glud1|14661|glutamate dehydrogenase 1	X57024|Glud1|14661|glutamate dehydrogenase 1	AK089152|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr8_-_72498210_72498309	2.69712	bHLH_family.p2	NM_001113346|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr15_+_34012415_34012599	2.67982	bHLH_family.p2	AK087486|Mtdh|67154|metadherin	AK156119|Mtdh|67154|metadherin	AK029915|Mtdh|67154|metadherin	NM_026002|Mtdh|67154|metadherin	AK011808|Mtdh|67154|metadherin	AK151810|Mtdh|67154|metadherin	AK171976|Mtdh|67154|metadherin	AK151269|Mtdh|67154|metadherin	AF501309|Mtdh|67154|metadherin	AK009253|Mtdh|67154|metadherin	BC023115|Mtdh|67154|metadherin
mm9_v1_chr7_-_152125823_152125829	2.67733	bHLH_family.p2	EU600170|Ccnd1|12443|cyclin D1	NM_007631|Ccnd1|12443|cyclin D1
mm9_v1_chr17_-_53828596_53828657	2.66515	bHLH_family.p2	AK014357|Sgol1|72415|shugoshin-like 1 (S. pombe)	NM_028232|Sgol1|72415|shugoshin-like 1 (S. pombe)	AK154188|Sgol1|72415|shugoshin-like 1 (S. pombe)
mm9_v1_chr2_+_92755251_92755331	2.62885	bHLH_family.p2	AK044038|Syt13|80976|synaptotagmin XIII	AK082425|Syt13|80976|synaptotagmin XIII	AK083803|Syt13|80976|synaptotagmin XIII	NM_030725|Syt13|80976|synaptotagmin XIII	BC030907|Syt13|80976|synaptotagmin XIII	AK049840|Syt13|80976|synaptotagmin XIII	AB048947|Syt13|80976|synaptotagmin XIII
mm9_v1_chr4_+_8617613_8617703	2.6243	bHLH_family.p2	AK035953|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr3_-_50247306_50247534	2.62116	bHLH_family.p2	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chrX_+_149574498_149574532	2.60514	bHLH_family.p2	NM_001004154|Rragb|245670|Ras-related GTP binding B	BC070407|Rragb|245670|Ras-related GTP binding B
mm9_v1_chr9_+_107489981_107490091	2.58383	bHLH_family.p2	AK166130|Ifrd2|15983|interferon-related developmental regulator 2	AK007687|Ifrd2|15983|interferon-related developmental regulator 2	NM_025903|Ifrd2|15983|interferon-related developmental regulator 2	AK156625|Ifrd2|15983|interferon-related developmental regulator 2	AK165967|Ifrd2|15983|interferon-related developmental regulator 2	AK149496|Ifrd2|15983|interferon-related developmental regulator 2	AK166258|Ifrd2|15983|interferon-related developmental regulator 2
mm9_v1_chr17_-_10512217_10512250	2.55546	bHLH_family.p2	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr11_-_95936914_95937007	2.54337	bHLH_family.p2	BC003854|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008191|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK009883|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_001161419|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011432|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK008998|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK011054|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK167884|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	AK010868|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)	NM_007506|Atp5g1|11951|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)
mm9_v1_chr3_+_90417072_90417127	2.53964	bHLH_family.p2	AK008241|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK008941|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK151587|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	M37761|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	X52278|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK150408|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AK151144|S100a6|20200|S100 calcium binding protein A6 (calcyclin)	AF549497|S100a6|20200|S100 calcium binding protein A6 (calcyclin)
mm9_v1_chr12_-_103057259_103057314	2.53951	bHLH_family.p2	AK090129|Fbln5|23876|fibulin 5	NM_011812|Fbln5|23876|fibulin 5	AF112151|Fbln5|23876|fibulin 5	AK157936|Fbln5|23876|fibulin 5	AK159960|Fbln5|23876|fibulin 5	AK159471|Fbln5|23876|fibulin 5
mm9_v1_chr2_-_144096164_144096250	2.52416	bHLH_family.p2	AK159904|Snx5|69178|sorting nexin 5	AK167362|Snx5|69178|sorting nexin 5
mm9_v1_chr12_-_77811119_77811130	2.5203	bHLH_family.p2	AK147684|Spnb1|20741|spectrin beta 1	AK147704|Spnb1|20741|spectrin beta 1
mm9_v1_chr16_-_95218980_95219037	2.48512	bHLH_family.p2	D86040|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK081109|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr15_-_93166789_93166977	2.47834	bHLH_family.p2	AK184096|Yaf2|67057|YY1 associated factor 2	AK012787|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr5_+_98683202_98683430	2.47353	bHLH_family.p2	AK028894|Fgf5|14176|fibroblast growth factor 5	NM_010203|Fgf5|14176|fibroblast growth factor 5	BC071227|Fgf5|14176|fibroblast growth factor 5	AK028694|Fgf5|14176|fibroblast growth factor 5	AB016516|Fgf5|14176|fibroblast growth factor 5	M30643|Fgf5|14176|fibroblast growth factor 5
mm9_v1_chr16_+_45158943_45159161	2.45988	bHLH_family.p2	AK078877|Atg3|67841|autophagy-related 3 (yeast)	BC010809|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr2_+_166631011_166631132	2.45879	bHLH_family.p2	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr11_-_98636538_98636646	2.45848	bHLH_family.p2	AK041047|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK135640|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	X86010|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137582|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	NM_145434|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137398|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK146430|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr7_+_135667095_135667183	2.4285	bHLH_family.p2	NM_013863|Bag3|29810|BCL2-associated athanogene 3	AB041583|Bag3|29810|BCL2-associated athanogene 3	AK171734|Bag3|29810|BCL2-associated athanogene 3	BC145765|Bag3|29810|BCL2-associated athanogene 3
mm9_v1_chr7_+_35904310_35904321	2.40795	bHLH_family.p2	NM_007678|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC011118|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC028890|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC051102|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC058161|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr2_-_154395469_154395650	2.38593	bHLH_family.p2	AF483514|E2f1|13555|E2F transcription factor 1	AF483515|E2f1|13555|E2F transcription factor 1	BC052160|E2f1|13555|E2F transcription factor 1	L21973|E2f1|13555|E2F transcription factor 1	NM_007891|E2f1|13555|E2F transcription factor 1	AK153968|E2f1|13555|E2F transcription factor 1
mm9_v1_chr7_+_120909625_120909653	2.37262	bHLH_family.p2	BC020531|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr3_+_135488617_135488753	2.36819	bHLH_family.p2	AK085740|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135149|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135150|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr16_-_22657283_22657317	2.35839	bHLH_family.p2	AK083258|Dgkg|110197|diacylglycerol kinase, gamma	NM_138650|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr8_-_89996474_89996540	2.28556	bHLH_family.p2	AK158818|Cbln1|12404|cerebellin 1 precursor protein	NM_019626|Cbln1|12404|cerebellin 1 precursor protein	AK158885|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr11_-_101646571_101646623	2.28427	bHLH_family.p2	AK166136|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144590|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	AK144538|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)	NM_008815|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr4_-_136512727_136512761	2.26825	bHLH_family.p2	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr16_-_57606866_57606989	2.25479	bHLH_family.p2	BC038891|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	BC038682|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019808|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK080386|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK003195|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019979|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK012168|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK136657|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	NM_025599|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene
mm9_v1_chr19_+_23215704_23215723	2.24956	bHLH_family.p2	AK028544|Klf9|16601|Kruppel-like factor 9	NM_010638|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr12_+_16660521_16660569	2.24347	bHLH_family.p2	AK081073|Ntsr2|18217|neurotensin receptor 2	AK005368|Ntsr2|18217|neurotensin receptor 2
mm9_v1_chrX_+_33868347_33868594	2.24249	bHLH_family.p2	AK167341|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK016522|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK147751|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	NM_028894|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120688|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120690|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK030866|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3
mm9_v1_chr18_-_60908267_60908331	2.23253	bHLH_family.p2	AK147282|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AK035642|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr18_+_56867378_56867570	2.22924	bHLH_family.p2	AK079511|Lmnb1|16906|lamin B1	AK132252|Lmnb1|16906|lamin B1	NM_010721|Lmnb1|16906|lamin B1	AK089110|Lmnb1|16906|lamin B1	BC052729|Lmnb1|16906|lamin B1	BC058392|Lmnb1|16906|lamin B1	M35153|Lmnb1|16906|lamin B1	X16705|Lmnb1|16906|lamin B1
mm9_v1_chr4_-_25726753_25727001	2.21812	bHLH_family.p2	AB015426|Fut9|14348|fucosyltransferase 9	BC116874|Fut9|14348|fucosyltransferase 9	BC116876|Fut9|14348|fucosyltransferase 9	AK047650|Fut9|14348|fucosyltransferase 9	AK163871|Fut9|14348|fucosyltransferase 9	AK036183|Fut9|14348|fucosyltransferase 9	AK043410|Fut9|14348|fucosyltransferase 9	AK049167|Fut9|14348|fucosyltransferase 9
mm9_v1_chr2_+_156301543_156301577	2.19971	bHLH_family.p2	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr5_-_124053691_124053818	2.18595	bHLH_family.p2	AK030387|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr11_-_79317471_79317554	2.17608	bHLH_family.p2	BC024757|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr15_+_66409094_66409201	2.17345	bHLH_family.p2	AK047044|Phf20l1|239510|PHD finger protein 20-like 1	AK032638|Phf20l1|239510|PHD finger protein 20-like 1	NM_001081409|Phf20l1|239510|PHD finger protein 20-like 1	BC082777|Phf20l1|239510|PHD finger protein 20-like 1	BC052212|Phf20l1|239510|PHD finger protein 20-like 1	BC061492|Phf20l1|239510|PHD finger protein 20-like 1
mm9_v1_chr1_+_9535477_9535591	2.16106	bHLH_family.p2	AK142041|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	NM_021511|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	BC003481|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AB041589|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK122207|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	BC055925|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK017683|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK010178|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK019913|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)	AK019257|Rrs1|59014|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm9_v1_chr2_+_71819264_71819343	2.15888	bHLH_family.p2	AK220281|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AB021132|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK161934|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK017479|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AF115480|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	BC139822|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	NM_019688|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr4_+_8617550_8617602	2.15645	bHLH_family.p2	AK171857|Chd7|320790|chromodomain helicase DNA binding protein 7	AK172025|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr8_+_77617514_77617529	2.15057	bHLH_family.p2	AK159870|Hmox1|15368|heme oxygenase (decycling) 1	AK159959|Hmox1|15368|heme oxygenase (decycling) 1	NM_010442|Hmox1|15368|heme oxygenase (decycling) 1	AK154598|Hmox1|15368|heme oxygenase (decycling) 1	AK150934|Hmox1|15368|heme oxygenase (decycling) 1	AK153420|Hmox1|15368|heme oxygenase (decycling) 1	AK153516|Hmox1|15368|heme oxygenase (decycling) 1	AK159521|Hmox1|15368|heme oxygenase (decycling) 1	AK151005|Hmox1|15368|heme oxygenase (decycling) 1	AK153566|Hmox1|15368|heme oxygenase (decycling) 1	AK169227|Hmox1|15368|heme oxygenase (decycling) 1	AK151012|Hmox1|15368|heme oxygenase (decycling) 1
mm9_v1_chr2_+_164659268_164659347	2.14797	bHLH_family.p2	AK159150|Ctsa|19025|cathepsin A	AK032197|Ctsa|19025|cathepsin A	AK159766|Ctsa|19025|cathepsin A	BC018534|Ctsa|19025|cathepsin A
mm9_v1_chr15_-_38230397_38230491	2.12781	bHLH_family.p2	BC003316|Klf10|21847|Kruppel-like factor 10	Z36270|Klf10|21847|Kruppel-like factor 10	AK154719|Klf10|21847|Kruppel-like factor 10	AF064088|Klf10|21847|Kruppel-like factor 10	AK043433|Klf10|21847|Kruppel-like factor 10	AK079679|Klf10|21847|Kruppel-like factor 10	AF049879|Klf10|21847|Kruppel-like factor 10	NM_013692|Klf10|21847|Kruppel-like factor 10	AK004906|Klf10|21847|Kruppel-like factor 10
mm9_v1_chr17_+_35137995_35138088	2.10816	bHLH_family.p2	AK157814|Vars|22321|valyl-tRNA synthetase	AK012123|Vars|22321|valyl-tRNA synthetase	AK154823|Vars|22321|valyl-tRNA synthetase	BC053703|Vars|22321|valyl-tRNA synthetase	AF087680|Vars|22321|valyl-tRNA synthetase
mm9_v1_chr12_-_103056971_103057106	2.09829	bHLH_family.p2	AK208765|Fbln5|23876|fibulin 5	AK178699|Fbln5|23876|fibulin 5	BC006636|Fbln5|23876|fibulin 5	AK159189|Fbln5|23876|fibulin 5
mm9_v1_chr13_-_94269616_94269653	2.082	bHLH_family.p2	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr14_-_62301012_62301198	2.06908	bHLH_family.p2	AK080165|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK139063|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK134888|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK042416|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK084358|Dleu2|668253|deleted in lymphocytic leukemia, 2	AF380423|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK165901|Dleu2|668253|deleted in lymphocytic leukemia, 2
mm9_v1_chr4_+_97444563_97444661	2.06821	bHLH_family.p2	D90176|Nfia|18027|nuclear factor I/A	Y07690|Nfia|18027|nuclear factor I/A	Y07691|Nfia|18027|nuclear factor I/A	BC122878|Nfia|18027|nuclear factor I/A	BC122880|Nfia|18027|nuclear factor I/A	AF326553|Nfia|18027|nuclear factor I/A	AF326554|Nfia|18027|nuclear factor I/A	U57633|Nfia|18027|nuclear factor I/A
mm9_v1_chr8_-_113917651_113917728	2.05181	bHLH_family.p2	AY660882|Fa2h|338521|fatty acid 2-hydroxylase	BC046985|Fa2h|338521|fatty acid 2-hydroxylase	BC111912|Fa2h|338521|fatty acid 2-hydroxylase	BC128080|Fa2h|338521|fatty acid 2-hydroxylase	BC128081|Fa2h|338521|fatty acid 2-hydroxylase	AK090338|Fa2h|338521|fatty acid 2-hydroxylase	AK033736|Fa2h|338521|fatty acid 2-hydroxylase	AK161502|Fa2h|338521|fatty acid 2-hydroxylase	NM_178086|Fa2h|338521|fatty acid 2-hydroxylase
mm9_v1_chr7_+_26444141_26444250	2.04898	bHLH_family.p2	NM_138586|Exosc5|27998|exosome component 5	AK007372|Exosc5|27998|exosome component 5	AK137780|Exosc5|27998|exosome component 5	AK006475|Exosc5|27998|exosome component 5	AK155228|Exosc5|27998|exosome component 5	BC092393|Exosc5|27998|exosome component 5	BC034358|Exosc5|27998|exosome component 5
mm9_v1_chr7_-_97278443_97278523	2.04003	bHLH_family.p2	AK019082|2310010J17Rik|78329|RIKEN cDNA 2310010J17 gene
mm9_v1_chr2_-_79296732_79296799	2.03657	bHLH_family.p2	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr6_+_108610606_108610702	2.03487	bHLH_family.p2	AK048242|Bhlhe40|20893|basic helix-loop-helix family, member e40	NM_011498|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK154935|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK090032|Bhlhe40|20893|basic helix-loop-helix family, member e40	BC010720|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF010305|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF364051|Bhlhe40|20893|basic helix-loop-helix family, member e40
mm9_v1_chr15_-_78994753_78994921	2.03482	bHLH_family.p2	BC023356|Sox10|20665|SRY-box containing gene 10	BC051058|Sox10|20665|SRY-box containing gene 10	AK185165|Sox10|20665|SRY-box containing gene 10	AK193670|Sox10|20665|SRY-box containing gene 10	AK185297|Sox10|20665|SRY-box containing gene 10	BC025171|Sox10|20665|SRY-box containing gene 10	AK043220|Sox10|20665|SRY-box containing gene 10	U66141|Sox10|20665|SRY-box containing gene 10	AK042542|Sox10|20665|SRY-box containing gene 10	NM_011437|Sox10|20665|SRY-box containing gene 10
mm9_v1_chr5_+_102194207_102194308	2.02063	bHLH_family.p2	AF533367|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr7_+_134913327_134913502	2.01725	bHLH_family.p2	AK136955|Orai3|269999|ORAI calcium release-activated calcium modulator 3	NM_198424|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AK037138|Orai3|269999|ORAI calcium release-activated calcium modulator 3	BC061259|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AB271216|Orai3|269999|ORAI calcium release-activated calcium modulator 3	AM712358|Orai3|269999|ORAI calcium release-activated calcium modulator 3
mm9_v1_chr11_-_70796432_70796469	1.99906	bHLH_family.p2	AK010601|C1qbp|12261|complement component 1, q subcomponent binding protein	AF300619|C1qbp|12261|complement component 1, q subcomponent binding protein	AJ001101|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr7_+_129432585_129432762	1.98117	bHLH_family.p2	NM_008855|Prkcb|18751|protein kinase C, beta	AK051862|Prkcb|18751|protein kinase C, beta
mm9_v1_chr16_+_18877336_18877523	1.9711	bHLH_family.p2	X92590|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X75295|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X99712|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr10_-_126778941_126778990	1.97016	bHLH_family.p2	AK157048|Gli1|14632|GLI-Kruppel family member GLI1
mm9_v1_chr19_+_10057131_10057449	1.95129	bHLH_family.p2	AK147082|Fth1|14319|ferritin heavy chain 1	AK150679|Fth1|14319|ferritin heavy chain 1	AK153195|Fth1|14319|ferritin heavy chain 1	AK153199|Fth1|14319|ferritin heavy chain 1	AK151241|Fth1|14319|ferritin heavy chain 1	AK152542|Fth1|14319|ferritin heavy chain 1	NM_010239|Fth1|14319|ferritin heavy chain 1	AK027998|Fth1|14319|ferritin heavy chain 1	AK088935|Fth1|14319|ferritin heavy chain 1	AK139622|Fth1|14319|ferritin heavy chain 1	AK150262|Fth1|14319|ferritin heavy chain 1	AK150508|Fth1|14319|ferritin heavy chain 1	AK150628|Fth1|14319|ferritin heavy chain 1	AK150693|Fth1|14319|ferritin heavy chain 1	AK151192|Fth1|14319|ferritin heavy chain 1	AK151609|Fth1|14319|ferritin heavy chain 1	AK151675|Fth1|14319|ferritin heavy chain 1	AK152071|Fth1|14319|ferritin heavy chain 1	AK153017|Fth1|14319|ferritin heavy chain 1	AK168601|Fth1|14319|ferritin heavy chain 1	AK169004|Fth1|14319|ferritin heavy chain 1	AK159243|Fth1|14319|ferritin heavy chain 1	AK151399|Fth1|14319|ferritin heavy chain 1	BC011096|Fth1|14319|ferritin heavy chain 1	BC012314|Fth1|14319|ferritin heavy chain 1	J03941|Fth1|14319|ferritin heavy chain 1	M24509|Fth1|14319|ferritin heavy chain 1	X12812|Fth1|14319|ferritin heavy chain 1
mm9_v1_chr4_+_84851440_84851480	1.94227	bHLH_family.p2	AF326561|Sh3gl2|20404|SH3-domain GRB2-like 2	AF326562|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr5_-_124482223_124482295	1.94119	bHLH_family.p2	AK082658|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172114|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172337|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK149893|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK166359|Vps37b|330192|vacuolar protein sorting 37B (yeast)	BC026744|Vps37b|330192|vacuolar protein sorting 37B (yeast)	NM_177876|Vps37b|330192|vacuolar protein sorting 37B (yeast)
mm9_v1_chr14_+_9046655_9046821	1.94103	bHLH_family.p2	AK082924|Kctd6|71393|potassium channel tetramerisation domain containing 6	AK017384|Kctd6|71393|potassium channel tetramerisation domain containing 6	NM_027782|Kctd6|71393|potassium channel tetramerisation domain containing 6	BC096370|Kctd6|71393|potassium channel tetramerisation domain containing 6
mm9_v1_chr10_-_5913894_5914027	1.90955	bHLH_family.p2	BC138908|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC145732|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	AK038060|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC002139|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	NM_024261|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene	BC099894|1700052N19Rik|73419|RIKEN cDNA 1700052N19 gene
mm9_v1_chr8_-_124431581_124431590	1.89745	bHLH_family.p2	AK142288|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	NM_011404|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr10_-_24919916_24919967	1.89067	bHLH_family.p2	AK086696|Akap7|432442|A kinase (PRKA) anchor protein 7	AK085630|Akap7|432442|A kinase (PRKA) anchor protein 7	AK139238|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr4_+_129725083_129725205	1.88706	bHLH_family.p2	NM_028266|Col16a1|107581|collagen, type XVI, alpha 1	AK051511|Col16a1|107581|collagen, type XVI, alpha 1	AK040971|Col16a1|107581|collagen, type XVI, alpha 1	AK142403|Col16a1|107581|collagen, type XVI, alpha 1	BC027766|Col16a1|107581|collagen, type XVI, alpha 1
mm9_v1_chr11_+_84693721_84693889	1.88687	bHLH_family.p2	BC060115|Myo19|66196|myosin XIX	NM_025414|Myo19|66196|myosin XIX	AK080117|Myo19|66196|myosin XIX	AK053237|Myo19|66196|myosin XIX	AK053033|Myo19|66196|myosin XIX
mm9_v1_chr10_-_127962914_127963016	1.88492	bHLH_family.p2	BC011482|Esyt1|23943|extended synaptotagmin-like protein 1	NM_011843|Esyt1|23943|extended synaptotagmin-like protein 1	AK044656|Esyt1|23943|extended synaptotagmin-like protein 1	AK088421|Esyt1|23943|extended synaptotagmin-like protein 1	AK080094|Esyt1|23943|extended synaptotagmin-like protein 1	AK152482|Esyt1|23943|extended synaptotagmin-like protein 1	AK152554|Esyt1|23943|extended synaptotagmin-like protein 1
mm9_v1_chr4_+_15192892_15192977	1.88324	bHLH_family.p2	AK156282|Tmem64|100201|transmembrane protein 64	NM_181401|Tmem64|100201|transmembrane protein 64	AY147882|Tmem64|100201|transmembrane protein 64	BC030341|Tmem64|100201|transmembrane protein 64
mm9_v1_chr5_-_77380189_77380218	1.87967	bHLH_family.p2	BC006053|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK148034|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK164506|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	BC023841|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr16_+_20672847_20672848	1.87308	bHLH_family.p2	AK134557|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr4_+_155366962_155366980	1.87234	bHLH_family.p2	BC005715|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr14_+_122874598_122874609	1.87043	bHLH_family.p2	AK051032|Zic2|22772|zinc finger protein of the cerebellum 2	NM_009574|Zic2|22772|zinc finger protein of the cerebellum 2
mm9_v1_chr10_+_127759640_127759648	1.87017	bHLH_family.p2	AK013014|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK019927|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr7_+_16683891_16684052	1.85868	bHLH_family.p2	AK050623|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK171998|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	BC004804|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK013895|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK004826|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK005372|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK136689|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	NM_025898|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chrX_+_149574541_149574624	1.8537	bHLH_family.p2	BC069180|Rragb|245670|Ras-related GTP binding B
mm9_v1_chr10_+_126500607_126500768	1.83938	bHLH_family.p2	BC046336|Cdk4|12567|cyclin-dependent kinase 4	NM_009870|Cdk4|12567|cyclin-dependent kinase 4	AK153465|Cdk4|12567|cyclin-dependent kinase 4	BC052694|Cdk4|12567|cyclin-dependent kinase 4	BC031599|Cdk4|12567|cyclin-dependent kinase 4	AK011871|Cdk4|12567|cyclin-dependent kinase 4	AK003804|Cdk4|12567|cyclin-dependent kinase 4	AK006918|Cdk4|12567|cyclin-dependent kinase 4	AK012064|Cdk4|12567|cyclin-dependent kinase 4	AK146107|Cdk4|12567|cyclin-dependent kinase 4	AK019380|Cdk4|12567|cyclin-dependent kinase 4	AK078440|Cdk4|12567|cyclin-dependent kinase 4	AK013400|Cdk4|12567|cyclin-dependent kinase 4	AK185090|Cdk4|12567|cyclin-dependent kinase 4
mm9_v1_chr10_+_125403223_125403262	1.83872	bHLH_family.p2	AK044994|Lrig3|320398|leucine-rich repeats and immunoglobulin-like domains 3
mm9_v1_chr4_-_137352181_137352292	1.83193	bHLH_family.p2	X13409|Alpl|11647|alkaline phosphatase, liver/bone/kidney	BC065175|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK167481|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK166732|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK076459|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK161780|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK167023|Alpl|11647|alkaline phosphatase, liver/bone/kidney	J02980|Alpl|11647|alkaline phosphatase, liver/bone/kidney	NM_007431|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK164002|Alpl|11647|alkaline phosphatase, liver/bone/kidney
mm9_v1_chr2_+_31428244_31428356	1.82837	bHLH_family.p2	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chr1_-_53841997_53842058	1.82559	bHLH_family.p2	AK029551|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK165291|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AY092028|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK153108|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	BC006579|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK035693|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK076932|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	AK083332|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)	NM_133810|Stk17b|98267|serine/threonine kinase 17b (apoptosis-inducing)
mm9_v1_chr6_+_29644178_29644255	1.82381	bHLH_family.p2	AF276890|Tspan33|232670|tetraspanin 33	AK172176|Tspan33|232670|tetraspanin 33	AK004954|Tspan33|232670|tetraspanin 33	BC024685|Tspan33|232670|tetraspanin 33	NM_146173|Tspan33|232670|tetraspanin 33
mm9_v1_chr4_+_40216581_40216623	1.82336	bHLH_family.p2	AK019894|2010003O02Rik|66434|RIKEN cDNA 2010003O02 gene	AK008077|2010003O02Rik|66434|RIKEN cDNA 2010003O02 gene
mm9_v1_chr6_+_128313041_128313108	1.81641	bHLH_family.p2	AK041638|Foxm1|14235|forkhead box M1	AK049177|Foxm1|14235|forkhead box M1	Y11245|Foxm1|14235|forkhead box M1
mm9_v1_chr3_-_101408495_101408631	1.78797	bHLH_family.p2	BC033435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC033471|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025811|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC021496|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025627|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC042435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025618|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	NM_144900|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK088000|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK137001|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159279|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159306|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC023794|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC032187|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide
mm9_v1_chr12_-_11443284_11443537	1.78349	bHLH_family.p2	BC046226|Vsnl1|26950|visinin-like 1	AK144454|Vsnl1|26950|visinin-like 1	AK160224|Vsnl1|26950|visinin-like 1	AJ489331|Vsnl1|26950|visinin-like 1	NM_012038|Vsnl1|26950|visinin-like 1
mm9_v1_chr15_-_79518160_79518352	1.77084	bHLH_family.p2	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr4_-_134260127_134260247	1.76885	bHLH_family.p2	AK144486|Man1c1|230815|mannosidase, alpha, class 1C, member 1	BC067023|Man1c1|230815|mannosidase, alpha, class 1C, member 1	NM_207237|Man1c1|230815|mannosidase, alpha, class 1C, member 1
mm9_v1_chr11_-_109334465_109334613	1.7638	bHLH_family.p2	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr11_+_77992224_77992267	1.76133	bHLH_family.p2	AK002265|Tlcd1|68385|TLC domain containing 1	AK161721|Tlcd1|68385|TLC domain containing 1	AK002703|Tlcd1|68385|TLC domain containing 1	BC005702|Tlcd1|68385|TLC domain containing 1	NM_026708|Tlcd1|68385|TLC domain containing 1
mm9_v1_chr2_+_112079943_112080042	1.76131	bHLH_family.p2	BC068131|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4	NM_207206|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4	BC080829|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4
mm9_v1_chr2_-_84510822_84510901	1.75707	bHLH_family.p2	AK167638|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK012609|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK142622|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	AK171972|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	BC056177|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	NM_001033166|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene	NM_001037279|2700094K13Rik|72657|RIKEN cDNA 2700094K13 gene
mm9_v1_chr19_-_42203380_42203559	1.75584	bHLH_family.p2	AK009243|Avpi1|69534|arginine vasopressin-induced 1	NM_027106|Avpi1|69534|arginine vasopressin-induced 1	BC027646|Avpi1|69534|arginine vasopressin-induced 1
mm9_v1_chr6_-_125263750_125263903	1.75489	bHLH_family.p2	BC138590|Ltbr|17000|lymphotoxin B receptor	BC138591|Ltbr|17000|lymphotoxin B receptor	AK146127|Ltbr|17000|lymphotoxin B receptor	L38423|Ltbr|17000|lymphotoxin B receptor	U29173|Ltbr|17000|lymphotoxin B receptor	NM_010736|Ltbr|17000|lymphotoxin B receptor
mm9_v1_chr9_+_83441886_83441956	1.74498	bHLH_family.p2	AK032092|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	NM_172507|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK029392|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK076202|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2	AK160357|Sh3bgrl2|212531|SH3 domain binding glutamic acid-rich protein like 2
mm9_v1_chr10_-_94786634_94786766	1.74494	bHLH_family.p2	AK052304|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK136561|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AJ224738|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	NM_009950|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK163112|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK144648|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain
mm9_v1_chr16_+_44139908_44140168	1.74267	bHLH_family.p2	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr11_+_74462965_74463046	1.71587	bHLH_family.p2	AK145708|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK157310|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154925|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	NM_001081158|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154146|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK036540|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK150045|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	BC072573|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene
mm9_v1_chr6_+_128312987_128313011	1.71043	bHLH_family.p2	BC075723|Foxm1|14235|forkhead box M1	BC065067|Foxm1|14235|forkhead box M1	NM_008021|Foxm1|14235|forkhead box M1
mm9_v1_chr1_+_55462764_55462802	1.7099	bHLH_family.p2	AK083136|Plcl1|227120|phospholipase C-like 1	AK161943|Plcl1|227120|phospholipase C-like 1	NM_001114663|Plcl1|227120|phospholipase C-like 1	AK135610|Plcl1|227120|phospholipase C-like 1
mm9_v1_chr11_+_119804400_119804447	1.70509	bHLH_family.p2	AK049469|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	AK145924|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	AK160401|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	NM_001037754|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	NM_001037755|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	NM_130862|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	AK170190|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	BC006620|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	BC016411|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	AF390178|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2	AF390179|Baiap2|108100|brain-specific angiogenesis inhibitor 1-associated protein 2
mm9_v1_chr7_-_31758390_31758487	1.69868	bHLH_family.p2	AK167463|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_001164184|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_001164185|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_017405|Lsr|54135|lipolysis stimulated lipoprotein receptor
mm9_v1_chr13_-_112599181_112599204	1.69234	bHLH_family.p2	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr2_+_25227840_25227897	1.69085	bHLH_family.p2	NM_001081085|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK154143|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	BC070477|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK008577|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK164615|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK166625|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK077952|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene
mm9_v1_chr10_-_6011993_6012000	1.67831	bHLH_family.p2	
mm9_v1_chr15_+_59205752_59205871	1.67733	bHLH_family.p2	NM_001164604|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	NM_026746|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK003685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK051277|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	BC009125|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK188685|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK211545|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)	AK212165|Nsmce2|68501|non-SMC element 2 homolog (MMS21, S. cerevisiae)
mm9_v1_chr2_+_153171730_153171874	1.67509	bHLH_family.p2	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr6_+_88674697_88674748	1.67422	bHLH_family.p2	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr8_-_87324043_87324239	1.67015	bHLH_family.p2	Y07688|Nfix|18032|nuclear factor I/X	NM_001081982|Nfix|18032|nuclear factor I/X	NM_010906|Nfix|18032|nuclear factor I/X
mm9_v1_chr3_+_90341208_90341304	1.66844	bHLH_family.p2	AK160178|S100a16|67860|S100 calcium binding protein A16	AK009762|S100a16|67860|S100 calcium binding protein A16	AK160512|S100a16|67860|S100 calcium binding protein A16	AK167006|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr4_+_155367019_155367119	1.6641	bHLH_family.p2	D50461|Sdf4|20318|stromal cell derived factor 4	BC068152|Sdf4|20318|stromal cell derived factor 4	NM_011341|Sdf4|20318|stromal cell derived factor 4	AK090319|Sdf4|20318|stromal cell derived factor 4	U45977|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr14_-_57723532_57723541	1.65175	bHLH_family.p2	AK135055|Gjb2|14619|gap junction protein, beta 2	AK146485|Gjb2|14619|gap junction protein, beta 2	AK157920|Gjb2|14619|gap junction protein, beta 2	AK160905|Gjb2|14619|gap junction protein, beta 2	NM_008125|Gjb2|14619|gap junction protein, beta 2
mm9_v1_chr5_-_124875921_124875965	1.6496	bHLH_family.p2	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr10_+_79317396_79317408	1.648	bHLH_family.p2	BC066210|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr9_-_43047862_43047949	1.64799	bHLH_family.p2	BC026022|Oaf|102644|OAF homolog (Drosophila)	BC034836|Oaf|102644|OAF homolog (Drosophila)	AK150279|Oaf|102644|OAF homolog (Drosophila)	BC025514|Oaf|102644|OAF homolog (Drosophila)	AK051349|Oaf|102644|OAF homolog (Drosophila)	NM_178644|Oaf|102644|OAF homolog (Drosophila)
mm9_v1_chr6_-_40386107_40386145	1.64135	bHLH_family.p2	AK145280|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK147402|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK054277|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	NM_175528|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene
mm9_v1_chr13_+_99124196_99124209	1.63955	bHLH_family.p2	AK164408|Foxd1|15229|forkhead box D1	AK142034|Foxd1|15229|forkhead box D1	AK132390|Foxd1|15229|forkhead box D1	AK142838|Foxd1|15229|forkhead box D1	NM_008242|Foxd1|15229|forkhead box D1	L38607|Foxd1|15229|forkhead box D1
mm9_v1_chr7_+_109054350_109054514	1.63162	bHLH_family.p2	NM_025605|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK010247|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK013389|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC126973|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK144476|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC020142|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK003509|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC092062|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK009320|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	BC096412|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK019947|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene	AK203171|2400001E08Rik|66508|RIKEN cDNA 2400001E08 gene
mm9_v1_chr9_-_63605745_63605800	1.62921	bHLH_family.p2	AK048626|Smad3|17127|MAD homolog 3 (Drosophila)	NM_016769|Smad3|17127|MAD homolog 3 (Drosophila)
mm9_v1_chr9_+_107490100_107490219	1.62582	bHLH_family.p2	BC023486|Ifrd2|15983|interferon-related developmental regulator 2	BC037434|Ifrd2|15983|interferon-related developmental regulator 2	AY298860|Ifrd2|15983|interferon-related developmental regulator 2
mm9_v1_chr17_+_35138281_35138402	1.62329	bHLH_family.p2	
mm9_v1_chr8_+_3631116_3631169	1.62248	bHLH_family.p2	AK088364|Stxbp2|20911|syntaxin binding protein 2	BC008102|Stxbp2|20911|syntaxin binding protein 2	U19520|Stxbp2|20911|syntaxin binding protein 2	AF263345|Stxbp2|20911|syntaxin binding protein 2	AK133419|Stxbp2|20911|syntaxin binding protein 2	NM_011503|Stxbp2|20911|syntaxin binding protein 2	D42068|Stxbp2|20911|syntaxin binding protein 2	BC003477|Stxbp2|20911|syntaxin binding protein 2
mm9_v1_chr17_+_25854116_25854176	1.61027	bHLH_family.p2	NM_022422|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	AK018778|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	AY029485|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13
mm9_v1_chr3_-_36374572_36374652	1.60653	bHLH_family.p2	AK153476|Anxa5|11747|annexin A5	BC003716|Anxa5|11747|annexin A5	AK147740|Anxa5|11747|annexin A5	AK153388|Anxa5|11747|annexin A5	AK152185|Anxa5|11747|annexin A5
mm9_v1_chr9_-_87150115_87150171	1.60193	bHLH_family.p2	BC004073|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC064713|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC150998|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC151006|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene	BC151104|4922501C03Rik|382090|RIKEN cDNA 4922501C03 gene
mm9_v1_chr6_+_88674398_88674540	1.59798	bHLH_family.p2	NM_001166249|Mgll|23945|monoglyceride lipase	NM_011844|Mgll|23945|monoglyceride lipase	AK131645|Mgll|23945|monoglyceride lipase	AK028008|Mgll|23945|monoglyceride lipase	AK148242|Mgll|23945|monoglyceride lipase	AK148395|Mgll|23945|monoglyceride lipase	AJ001118|Mgll|23945|monoglyceride lipase	BC057965|Mgll|23945|monoglyceride lipase	AK215869|Mgll|23945|monoglyceride lipase	AK185666|Mgll|23945|monoglyceride lipase	AK188627|Mgll|23945|monoglyceride lipase	AK206822|Mgll|23945|monoglyceride lipase	AK208240|Mgll|23945|monoglyceride lipase	AK211363|Mgll|23945|monoglyceride lipase
mm9_v1_chr8_-_70342105_70342226	1.59464	bHLH_family.p2	BC131913|Psd3|234353|pleckstrin and Sec7 domain containing 3	BC145641|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK031477|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK147606|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_027626|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr11_-_106134024_106134359	1.58058	bHLH_family.p2	AK166123|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	AK159259|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_001130187|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr4_+_84851330_84851416	1.57807	bHLH_family.p2	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr7_-_26443700_26443803	1.57358	bHLH_family.p2	L47335|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide	AK002435|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide	AK154734|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide	NM_007533|Bckdha|12039|branched chain ketoacid dehydrogenase E1, alpha polypeptide
mm9_v1_chr11_-_107776248_107776368	1.57239	bHLH_family.p2	AK080762|Cacng5|140723|calcium channel, voltage-dependent, gamma subunit 5	AK032260|Cacng5|140723|calcium channel, voltage-dependent, gamma subunit 5	AK034065|Cacng5|140723|calcium channel, voltage-dependent, gamma subunit 5
mm9_v1_chr5_+_97426665_97426877	1.55945	bHLH_family.p2	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr3_-_107499129_107499327	1.55648	bHLH_family.p2	AB092504|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1	BC018218|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr6_-_83725683_83725774	1.55049	bHLH_family.p2	AK185442|Tex261|21766|testis expressed gene 261	AK201329|Tex261|21766|testis expressed gene 261	BC003802|Tex261|21766|testis expressed gene 261	X80426|Tex261|21766|testis expressed gene 261	X81058|Tex261|21766|testis expressed gene 261	AK149789|Tex261|21766|testis expressed gene 261
mm9_v1_chr9_-_114842953_114842992	1.5412	bHLH_family.p2	AK166662|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	BC037729|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK145475|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr11_-_115229039_115229044	1.53869	bHLH_family.p2	AK138882|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chr5_-_137755406_137755631	1.53857	bHLH_family.p2	AK146823|Trip6|22051|thyroid hormone receptor interactor 6	AK159387|Trip6|22051|thyroid hormone receptor interactor 6	AF116823|Trip6|22051|thyroid hormone receptor interactor 6	AK010435|Trip6|22051|thyroid hormone receptor interactor 6	NM_011639|Trip6|22051|thyroid hormone receptor interactor 6	AK166024|Trip6|22051|thyroid hormone receptor interactor 6
mm9_v1_chr1_-_55144637_55144685	1.53778	bHLH_family.p2	X55023|Hspd1|15510|heat shock protein 1 (chaperonin)	BC016400|Hspd1|15510|heat shock protein 1 (chaperonin)	AK143882|Hspd1|15510|heat shock protein 1 (chaperonin)
mm9_v1_chr2_-_122436933_122437055	1.53384	bHLH_family.p2	BC003879|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK153450|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145862|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146052|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK151313|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK007325|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145914|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146111|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK152069|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	NM_025961|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm9_v1_chr2_+_6243767_6243980	1.53243	bHLH_family.p2	AK155073|Usp6nl|98910|USP6 N-terminal like	NM_001080548|Usp6nl|98910|USP6 N-terminal like	AK129037|Usp6nl|98910|USP6 N-terminal like	AK084045|Usp6nl|98910|USP6 N-terminal like
mm9_v1_chr7_+_119369347_119369415	1.52619	bHLH_family.p2	NM_001193305|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	NM_177282|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK030608|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK138935|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163078|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK143191|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK161075|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163231|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2
mm9_v1_chr18_-_14131046_14131241	1.52608	bHLH_family.p2	BC021376|Zfp521|225207|zinc finger protein 521	AK052655|Zfp521|225207|zinc finger protein 521	AY147406|Zfp521|225207|zinc finger protein 521	NM_145492|Zfp521|225207|zinc finger protein 521
mm9_v1_chr9_-_42280256_42280323	1.5239	bHLH_family.p2	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr9_+_72655019_72655080	1.51719	bHLH_family.p2	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr17_+_56179740_56179949	1.51461	bHLH_family.p2	AK135763|Chaf1a|27221|chromatin assembly factor 1, subunit A (p150)	AK034839|Chaf1a|27221|chromatin assembly factor 1, subunit A (p150)	NM_013733|Chaf1a|27221|chromatin assembly factor 1, subunit A (p150)	BC053740|Chaf1a|27221|chromatin assembly factor 1, subunit A (p150)	AJ132771|Chaf1a|27221|chromatin assembly factor 1, subunit A (p150)
mm9_v1_chrX_-_131135346_131135571	1.51031	bHLH_family.p2	AK040081|Gla|11605|galactosidase, alpha	AK164231|Gla|11605|galactosidase, alpha	AK166204|Gla|11605|galactosidase, alpha	U50716|Gla|11605|galactosidase, alpha	AK145011|Gla|11605|galactosidase, alpha	AK166245|Gla|11605|galactosidase, alpha	U34071|Gla|11605|galactosidase, alpha	AK054547|Gla|11605|galactosidase, alpha	BC009021|Gla|11605|galactosidase, alpha	AK145148|Gla|11605|galactosidase, alpha	NM_013463|Gla|11605|galactosidase, alpha
mm9_v1_chr17_-_56749096_56749193	1.51028	bHLH_family.p2	BC056164|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	BC049674|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AK075942|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AY091637|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AK075961|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	NM_153152|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene
mm9_v1_chr15_-_58046380_58046399	1.5075	bHLH_family.p2	BC027211|Fbxo32|67731|F-box protein 32	AK014612|Fbxo32|67731|F-box protein 32
mm9_v1_chr14_+_34736806_34736957	1.50584	bHLH_family.p2	L42114|Gdf10|14560|growth differentiation factor 10	S82648|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr6_-_127075853_127076093	1.50408	bHLH_family.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr18_+_77424573_77424607	1.4911	bHLH_family.p2	AK013542|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	NM_013666|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	NM_153124|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	BC034855|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm9_v1_chr8_-_73905790_73905902	1.49043	bHLH_family.p2	AK131941|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6	NM_010150|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6
mm9_v1_chr15_+_34012606_34012790	1.48914	bHLH_family.p2	BC138858|Mtdh|67154|metadherin	BC138859|Mtdh|67154|metadherin	BC036994|Mtdh|67154|metadherin	AY553638|Mtdh|67154|metadherin
mm9_v1_chr3_+_89577436_89577810	1.48735	bHLH_family.p2	NM_027315|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY112699|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY945937|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AK146707|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr6_-_124915441_124915537	1.47795	bHLH_family.p2	AK013155|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010726|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK010417|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK019122|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)	AK008474|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr3_+_137527448_137527565	1.47649	bHLH_family.p2	AK088704|H2afz|51788|H2A histone family, member Z	AK146181|H2afz|51788|H2A histone family, member Z	BC079903|H2afz|51788|H2A histone family, member Z	AK143572|H2afz|51788|H2A histone family, member Z	AK151052|H2afz|51788|H2A histone family, member Z	AK151509|H2afz|51788|H2A histone family, member Z	AK152848|H2afz|51788|H2A histone family, member Z	AK168178|H2afz|51788|H2A histone family, member Z	AK169003|H2afz|51788|H2A histone family, member Z	AY074806|H2afz|51788|H2A histone family, member Z	AK028176|H2afz|51788|H2A histone family, member Z	AK150454|H2afz|51788|H2A histone family, member Z	AK151462|H2afz|51788|H2A histone family, member Z	AK151868|H2afz|51788|H2A histone family, member Z	AK152398|H2afz|51788|H2A histone family, member Z	NM_016750|H2afz|51788|H2A histone family, member Z	U70494|H2afz|51788|H2A histone family, member Z	AK212062|H2afz|51788|H2A histone family, member Z
mm9_v1_chr13_-_76081244_76081314	1.47603	bHLH_family.p2	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr6_+_108163155_108163235	1.47367	bHLH_family.p2	AK042240|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr15_-_78603874_78603911	1.47331	bHLH_family.p2	NM_008595|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94349|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC010983|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK143523|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr19_-_24355054_24355107	1.46996	bHLH_family.p2	BC058533|Fxn|14297|frataxin	BC125337|Fxn|14297|frataxin	BC132337|Fxn|14297|frataxin	NM_008044|Fxn|14297|frataxin	U95736|Fxn|14297|frataxin	AK160458|Fxn|14297|frataxin	AK148147|Fxn|14297|frataxin
mm9_v1_chr7_-_149573693_149573841	1.46254	bHLH_family.p2	X53337|Ctsd|13033|cathepsin D	AK167867|Ctsd|13033|cathepsin D	AK150622|Ctsd|13033|cathepsin D	AK089294|Ctsd|13033|cathepsin D	AK150364|Ctsd|13033|cathepsin D	AK150579|Ctsd|13033|cathepsin D	AK150636|Ctsd|13033|cathepsin D	AK150694|Ctsd|13033|cathepsin D	AK150768|Ctsd|13033|cathepsin D	AK151256|Ctsd|13033|cathepsin D	AK151275|Ctsd|13033|cathepsin D	AK151276|Ctsd|13033|cathepsin D	AK151374|Ctsd|13033|cathepsin D	AK151829|Ctsd|13033|cathepsin D	AK152168|Ctsd|13033|cathepsin D	AK152187|Ctsd|13033|cathepsin D	AK152188|Ctsd|13033|cathepsin D	AK152458|Ctsd|13033|cathepsin D	AK152567|Ctsd|13033|cathepsin D	AK152578|Ctsd|13033|cathepsin D	AK152680|Ctsd|13033|cathepsin D	AK152828|Ctsd|13033|cathepsin D	AK152881|Ctsd|13033|cathepsin D	AK152892|Ctsd|13033|cathepsin D	AK153191|Ctsd|13033|cathepsin D	AK153291|Ctsd|13033|cathepsin D	AK159097|Ctsd|13033|cathepsin D	AK159209|Ctsd|13033|cathepsin D	AK159490|Ctsd|13033|cathepsin D	AK159580|Ctsd|13033|cathepsin D	AK159896|Ctsd|13033|cathepsin D	AK167698|Ctsd|13033|cathepsin D	AK171195|Ctsd|13033|cathepsin D	AK172583|Ctsd|13033|cathepsin D	AK150363|Ctsd|13033|cathepsin D	AK151962|Ctsd|13033|cathepsin D	AK152406|Ctsd|13033|cathepsin D	AK159743|Ctsd|13033|cathepsin D	AK152036|Ctsd|13033|cathepsin D	AK166864|Ctsd|13033|cathepsin D	AK167750|Ctsd|13033|cathepsin D	AK152593|Ctsd|13033|cathepsin D	BC048900|Ctsd|13033|cathepsin D	BC053937|Ctsd|13033|cathepsin D	BC053940|Ctsd|13033|cathepsin D	AK152638|Ctsd|13033|cathepsin D	BC057931|Ctsd|13033|cathepsin D	AK167143|Ctsd|13033|cathepsin D	AK159512|Ctsd|13033|cathepsin D	NM_009983|Ctsd|13033|cathepsin D	X52886|Ctsd|13033|cathepsin D	AK166938|Ctsd|13033|cathepsin D	AK159440|Ctsd|13033|cathepsin D	AK159970|Ctsd|13033|cathepsin D	AK150946|Ctsd|13033|cathepsin D	AK152045|Ctsd|13033|cathepsin D	AK169139|Ctsd|13033|cathepsin D	AK165227|Ctsd|13033|cathepsin D	AK167366|Ctsd|13033|cathepsin D	AK093885|Ctsd|13033|cathepsin D	BC054758|Ctsd|13033|cathepsin D
mm9_v1_chr10_-_6980199_6980474	1.45851	bHLH_family.p2	AK042973|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	NM_133485|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK047607|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK085997|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AF407167|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr7_+_57033711_57033769	1.45629	bHLH_family.p2	AK010534|Prmt3|71974|protein arginine N-methyltransferase 3	AK031738|Prmt3|71974|protein arginine N-methyltransferase 3	NM_133740|Prmt3|71974|protein arginine N-methyltransferase 3	AK155236|Prmt3|71974|protein arginine N-methyltransferase 3	AK008118|Prmt3|71974|protein arginine N-methyltransferase 3	AK049836|Prmt3|71974|protein arginine N-methyltransferase 3	BC050775|Prmt3|71974|protein arginine N-methyltransferase 3	AK086646|Prmt3|71974|protein arginine N-methyltransferase 3
mm9_v1_chr19_+_43514902_43514932	1.45159	bHLH_family.p2	NM_031396|Cnnm1|83674|cyclin M1
mm9_v1_chr10_-_61949345_61949552	1.44968	bHLH_family.p2	AK028096|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_001113355|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK086851|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK150244|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK151360|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC007148|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK149859|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC058236|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK147989|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK152424|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK165853|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	S41204|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK159783|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK167592|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168537|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168213|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_133672|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)
mm9_v1_chr14_-_103381744_103381856	1.44858	bHLH_family.p2	BC116647|Kctd12|239217|potassium channel tetramerisation domain containing 12	BC116648|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK035535|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK172581|Kctd12|239217|potassium channel tetramerisation domain containing 12	NM_177715|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK087895|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr1_-_75206018_75206068	1.44286	bHLH_family.p2	BC021773|Glb1l|74577|galactosidase, beta 1-like	AK014667|Glb1l|74577|galactosidase, beta 1-like
mm9_v1_chr5_-_115223373_115223529	1.44136	bHLH_family.p2	AF148693|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK005365|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK017943|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC043062|Git2|26431|G protein-coupled receptor kinase-interactor 2	BC056993|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077360|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_019834|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK220323|Git2|26431|G protein-coupled receptor kinase-interactor 2	NM_001077359|Git2|26431|G protein-coupled receptor kinase-interactor 2	AK148029|Git2|26431|G protein-coupled receptor kinase-interactor 2
mm9_v1_chr3_+_67386633_67386754	1.4348	bHLH_family.p2	AK075859|Mfsd1|66868|major facilitator superfamily domain containing 1	AK159554|Mfsd1|66868|major facilitator superfamily domain containing 1	AK152444|Mfsd1|66868|major facilitator superfamily domain containing 1	AK135235|Mfsd1|66868|major facilitator superfamily domain containing 1	NM_025813|Mfsd1|66868|major facilitator superfamily domain containing 1	AK004586|Mfsd1|66868|major facilitator superfamily domain containing 1	AK136108|Mfsd1|66868|major facilitator superfamily domain containing 1	AK166645|Mfsd1|66868|major facilitator superfamily domain containing 1	BC024891|Mfsd1|66868|major facilitator superfamily domain containing 1	AK032688|Mfsd1|66868|major facilitator superfamily domain containing 1
mm9_v1_chr4_+_108292534_108292631	1.43108	bHLH_family.p2	AK146601|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK043839|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	NM_177045|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK148162|Cc2d1b|319965|coiled-coil and C2 domain containing 1B
mm9_v1_chr13_-_94269762_94269770	1.43019	bHLH_family.p2	AK141957|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr10_-_6979959_6980009	1.42842	bHLH_family.p2	BC055717|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chrX_-_71613816_71613902	1.42822	bHLH_family.p2	AK048689|Ubl4|27643|ubiquitin-like 4	AJ627038|Ubl4|27643|ubiquitin-like 4	BC010817|Ubl4|27643|ubiquitin-like 4	NM_145405|Ubl4|27643|ubiquitin-like 4	AK146110|Ubl4|27643|ubiquitin-like 4
mm9_v1_chr15_+_103070840_103070935	1.41835	bHLH_family.p2	AK131999|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK136113|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146630|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_001039129|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_010447|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168531|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK135391|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK152684|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK161730|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166901|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167161|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167810|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167811|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168420|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168733|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK169216|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK007802|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK088308|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146126|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166989|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167820|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167913|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	M99167|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC052723|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC080675|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC092395|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC089340|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC083136|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86728|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86729|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1
mm9_v1_chr15_-_58046428_58046480	1.41643	bHLH_family.p2	AK014793|Fbxo32|67731|F-box protein 32	NM_026346|Fbxo32|67731|F-box protein 32	AF441120|Fbxo32|67731|F-box protein 32
mm9_v1_chr11_+_86940679_86940790	1.41071	bHLH_family.p2	AK012668|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr18_+_67624537_67624590	1.4088	bHLH_family.p2	AK044163|Slmo1|225655|slowmo homolog 1 (Drosophila)	AK038905|Slmo1|225655|slowmo homolog 1 (Drosophila)	BC019561|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr8_+_77557582_77557708	1.39854	bHLH_family.p2	NM_001136259|Tom1|21968|target of myb1 homolog (chicken)	NM_011622|Tom1|21968|target of myb1 homolog (chicken)	AJ006972|Tom1|21968|target of myb1 homolog (chicken)	AK051245|Tom1|21968|target of myb1 homolog (chicken)	BC157905|Tom1|21968|target of myb1 homolog (chicken)	BC158042|Tom1|21968|target of myb1 homolog (chicken)	BC021633|Tom1|21968|target of myb1 homolog (chicken)	AK150143|Tom1|21968|target of myb1 homolog (chicken)	AK160403|Tom1|21968|target of myb1 homolog (chicken)	AK028398|Tom1|21968|target of myb1 homolog (chicken)	BC093520|Tom1|21968|target of myb1 homolog (chicken)	AK184431|Tom1|21968|target of myb1 homolog (chicken)
mm9_v1_chr10_+_78243274_78243338	1.39792	bHLH_family.p2	BC138120|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	BC138140|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
mm9_v1_chr8_-_26895633_26895758	1.39701	bHLH_family.p2	BC058518|Bag4|67384|BCL2-associated athanogene 4	AK162658|Bag4|67384|BCL2-associated athanogene 4	BC037239|Bag4|67384|BCL2-associated athanogene 4	AK010765|Bag4|67384|BCL2-associated athanogene 4	AK136899|Bag4|67384|BCL2-associated athanogene 4	AK160316|Bag4|67384|BCL2-associated athanogene 4	AF332863|Bag4|67384|BCL2-associated athanogene 4	NM_026121|Bag4|67384|BCL2-associated athanogene 4	BC138201|Bag4|67384|BCL2-associated athanogene 4	BC145986|Bag4|67384|BCL2-associated athanogene 4
mm9_v1_chr11_-_3439172_3439299	1.39501	bHLH_family.p2	BC066192|Smtn|29856|smoothelin	BC069836|Smtn|29856|smoothelin	BC069839|Smtn|29856|smoothelin	BC010599|Smtn|29856|smoothelin	AF064236|Smtn|29856|smoothelin	AJ010305|Smtn|29856|smoothelin	AK166385|Smtn|29856|smoothelin	AK170516|Smtn|29856|smoothelin	AK085412|Smtn|29856|smoothelin	AK030932|Smtn|29856|smoothelin	AK138898|Smtn|29856|smoothelin	NM_001159284|Smtn|29856|smoothelin	NM_013870|Smtn|29856|smoothelin
mm9_v1_chr11_+_109224104_109224273	1.39482	bHLH_family.p2	NM_010303|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK011851|Gna13|14674|guanine nucleotide binding protein, alpha 13	M63660|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK149766|Gna13|14674|guanine nucleotide binding protein, alpha 13	BC057665|Gna13|14674|guanine nucleotide binding protein, alpha 13
mm9_v1_chr4_+_97444494_97444517	1.39469	bHLH_family.p2	AK052204|Nfia|18027|nuclear factor I/A
mm9_v1_chr11_+_105153956_105154033	1.39402	bHLH_family.p2	AK054150|Mrc2|17534|mannose receptor, C type 2	NM_008626|Mrc2|17534|mannose receptor, C type 2	AK028157|Mrc2|17534|mannose receptor, C type 2	U56734|Mrc2|17534|mannose receptor, C type 2	BC116642|Mrc2|17534|mannose receptor, C type 2
mm9_v1_chr5_-_24348170_24348237	1.39226	bHLH_family.p2	AY197373|Rheb|19744|Ras homolog enriched in brain	NM_053075|Rheb|19744|Ras homolog enriched in brain	BC012273|Rheb|19744|Ras homolog enriched in brain	AK151213|Rheb|19744|Ras homolog enriched in brain	AB039919|Rheb|19744|Ras homolog enriched in brain
mm9_v1_chr11_+_115024626_115024782	1.38962	bHLH_family.p2	AK085210|Slc9a3r1|26941|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	AK168894|Slc9a3r1|26941|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	NM_012030|Slc9a3r1|26941|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	AK153558|Slc9a3r1|26941|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	BC085141|Slc9a3r1|26941|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	U74079|Slc9a3r1|26941|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	BC038656|Slc9a3r1|26941|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
mm9_v1_chr7_+_35971403_35971489	1.38775	bHLH_family.p2	BC027516|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	NM_017394|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AK031867|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	BC054765|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AB026688|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm9_v1_chr11_-_76660476_76660569	1.38261	bHLH_family.p2	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr4_+_151671441_151671540	1.38216	bHLH_family.p2	NM_133788|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AF209926|Icmt|57295|isoprenylcysteine carboxyl methyltransferase
mm9_v1_chr19_+_46130978_46131205	1.37058	bHLH_family.p2	NM_001081214|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK147947|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK044522|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK122322|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	BC066048|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK180476|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm9_v1_chr17_-_10512094_10512209	1.36985	bHLH_family.p2	BC053426|Qk|19317|quaking
mm9_v1_chr19_-_7315495_7315711	1.36806	bHLH_family.p2	AK202154|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK035418|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033510|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK170548|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033896|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK089209|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK162625|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	BC020020|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK016504|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	NM_027643|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm9_v1_chr18_+_65960170_65960280	1.36729	bHLH_family.p2	AK003027|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	AK003411|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	AK007641|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	NM_025468|Sec11c|66286|SEC11 homolog C (S. cerevisiae)
mm9_v1_chr17_+_45701100_45701100	1.36492	bHLH_family.p2	AK167343|Slc35b2|73836|solute carrier family 35, member B2	NM_028662|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr11_-_94515034_94515062	1.35658	bHLH_family.p2	BC089459|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr9_+_21172314_21172446	1.35185	bHLH_family.p2	AK150276|Ilf3|16201|interleukin enhancer binding factor 3	AK128936|Ilf3|16201|interleukin enhancer binding factor 3	AK048096|Ilf3|16201|interleukin enhancer binding factor 3	AK077560|Ilf3|16201|interleukin enhancer binding factor 3	BC047272|Ilf3|16201|interleukin enhancer binding factor 3	AF497751|Ilf3|16201|interleukin enhancer binding factor 3	AF497752|Ilf3|16201|interleukin enhancer binding factor 3	DQ104405|Ilf3|16201|interleukin enhancer binding factor 3	DQ104406|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042707|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042708|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042709|Ilf3|16201|interleukin enhancer binding factor 3	NM_010561|Ilf3|16201|interleukin enhancer binding factor 3
mm9_v1_chr11_-_100800603_100800824	1.33856	bHLH_family.p2	U06922|Stat3|20848|signal transducer and activator of transcription 3	AK145486|Stat3|20848|signal transducer and activator of transcription 3	U08378|Stat3|20848|signal transducer and activator of transcription 3	BC003806|Stat3|20848|signal transducer and activator of transcription 3	U30709|Stat3|20848|signal transducer and activator of transcription 3	BC019168|Stat3|20848|signal transducer and activator of transcription 3	AK153472|Stat3|20848|signal transducer and activator of transcription 3	AK153005|Stat3|20848|signal transducer and activator of transcription 3	L29278|Stat3|20848|signal transducer and activator of transcription 3	NM_011486|Stat3|20848|signal transducer and activator of transcription 3	NM_213659|Stat3|20848|signal transducer and activator of transcription 3	NM_213660|Stat3|20848|signal transducer and activator of transcription 3
mm9_v1_chr9_-_65917524_65917537	1.33395	bHLH_family.p2	BC138950|Snx22|382083|sorting nexin 22	BC138951|Snx22|382083|sorting nexin 22	AK032028|Snx22|382083|sorting nexin 22	NM_001025612|Snx22|382083|sorting nexin 22
mm9_v1_chr9_-_108166193_108166275	1.33151	bHLH_family.p2	AK053886|Dag1|13138|dystroglycan 1	AK145048|Dag1|13138|dystroglycan 1	AK036174|Dag1|13138|dystroglycan 1
mm9_v1_chr15_-_76554192_76554281	1.32573	bHLH_family.p2	AK046662|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	BC026997|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	BC019462|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK053546|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK163615|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK021050|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK165937|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK075645|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK085641|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK140368|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	AK140578|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	NM_145472|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene	NM_176828|C030006K11Rik|223665|RIKEN cDNA C030006K11 gene
mm9_v1_chr10_-_62801726_62801784	1.32568	bHLH_family.p2	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr3_+_89240625_89240684	1.32498	bHLH_family.p2	NM_146131|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028858|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159422|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159448|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK160103|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159633|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028754|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC027771|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK170318|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC034200|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1
mm9_v1_chr4_+_118100682_118100801	1.32228	bHLH_family.p2	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr17_+_71533016_71533072	1.32035	bHLH_family.p2	AK086834|Lpin2|64898|lipin 2
mm9_v1_chr13_-_54788995_54789018	1.3159	bHLH_family.p2	AK160090|Rnf44|105239|ring finger protein 44	AK160115|Rnf44|105239|ring finger protein 44
mm9_v1_chr6_-_148779856_148779997	1.31017	bHLH_family.p2	BC151036|Ipo8|320727|importin 8	BC151052|Ipo8|320727|importin 8	BC044819|Ipo8|320727|importin 8	BC054373|Ipo8|320727|importin 8	NM_001081113|Ipo8|320727|importin 8
mm9_v1_chr7_+_28233013_28233084	1.30941	bHLH_family.p2	BC006617|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))	AK153153|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))
mm9_v1_chr7_+_3655919_3655955	1.30716	bHLH_family.p2	BC012491|Rps9|76846|ribosomal protein S9
mm9_v1_chr7_-_54051250_54051427	1.30576	bHLH_family.p2	BC082542|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005247|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005248|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001167864|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	BC046443|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)
mm9_v1_chr1_+_63223728_63223739	1.30082	bHLH_family.p2	AF029844|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2
mm9_v1_chr11_+_87391881_87392001	1.29588	bHLH_family.p2	AK133933|Sept4|18952|septin 4	AK137299|Sept4|18952|septin 4	AK039859|Sept4|18952|septin 4
mm9_v1_chrX_-_83021840_83022157	1.29465	bHLH_family.p2	U48403|Gyk|14933|glycerol kinase	AK008186|Gyk|14933|glycerol kinase	BC003767|Gyk|14933|glycerol kinase	AK169424|Gyk|14933|glycerol kinase	AK088373|Gyk|14933|glycerol kinase	AK044308|Gyk|14933|glycerol kinase	AK169525|Gyk|14933|glycerol kinase	NM_008194|Gyk|14933|glycerol kinase	NM_212444|Gyk|14933|glycerol kinase
mm9_v1_chr12_-_77810949_77811009	1.29371	bHLH_family.p2	S66283|Spnb1|20741|spectrin beta 1
mm9_v1_chr15_+_99803210_99803320	1.29018	bHLH_family.p2	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr2_+_122060526_122060603	1.29016	bHLH_family.p2	AK152169|Sord|20322|sorbitol dehydrogenase	AK166996|Sord|20322|sorbitol dehydrogenase	AK004692|Sord|20322|sorbitol dehydrogenase	BC024124|Sord|20322|sorbitol dehydrogenase	BC092291|Sord|20322|sorbitol dehydrogenase	AK015059|Sord|20322|sorbitol dehydrogenase	NM_146126|Sord|20322|sorbitol dehydrogenase	AK166988|Sord|20322|sorbitol dehydrogenase	U27014|Sord|20322|sorbitol dehydrogenase	BC039957|Sord|20322|sorbitol dehydrogenase	BC030875|Sord|20322|sorbitol dehydrogenase
mm9_v1_chr7_-_20284370_20284493	1.28999	bHLH_family.p2	BC083351|Apoe|11816|apolipoprotein E	BC044785|Apoe|11816|apolipoprotein E	AK149568|Apoe|11816|apolipoprotein E	BC028816|Apoe|11816|apolipoprotein E	AK010261|Apoe|11816|apolipoprotein E	AK075843|Apoe|11816|apolipoprotein E	AK131624|Apoe|11816|apolipoprotein E	AK134921|Apoe|11816|apolipoprotein E	AK148747|Apoe|11816|apolipoprotein E	AK149111|Apoe|11816|apolipoprotein E	AK159105|Apoe|11816|apolipoprotein E	AK159517|Apoe|11816|apolipoprotein E	AK150834|Apoe|11816|apolipoprotein E	AK159424|Apoe|11816|apolipoprotein E
mm9_v1_chr9_-_79566271_79566499	1.28797	bHLH_family.p2	U25652|Col12a1|12816|collagen, type XII, alpha 1	NM_007730|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr16_-_18811669_18811731	1.28787	bHLH_family.p2	AF081537|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AF081538|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AK147013|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AJ223729|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	BC006856|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AF098068|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	AK167850|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	BC028635|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)	NM_001161623|Cdc45|12544|cell division cycle 45 homolog (S. cerevisiae)
mm9_v1_chr5_-_53604536_53604567	1.28613	bHLH_family.p2	AK037220|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)	AK030487|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr5_+_123526279_123526440	1.28596	bHLH_family.p2	NM_001039723|Tmem120b|330189|transmembrane protein 120B	AK132283|Tmem120b|330189|transmembrane protein 120B	AK158123|Tmem120b|330189|transmembrane protein 120B	BC022593|Tmem120b|330189|transmembrane protein 120B	BC115785|Tmem120b|330189|transmembrane protein 120B	BC118014|Tmem120b|330189|transmembrane protein 120B	AK172110|Tmem120b|330189|transmembrane protein 120B
mm9_v1_chr4_-_147412919_147412952	1.28468	bHLH_family.p2	AK145053|Clcn6|26372|chloride channel 6	AK165362|Clcn6|26372|chloride channel 6
mm9_v1_chr17_-_33918382_33918492	1.28282	bHLH_family.p2	AF169313|Angptl4|57875|angiopoietin-like 4	AB054540|Angptl4|57875|angiopoietin-like 4	AF123261|Angptl4|57875|angiopoietin-like 4	AF278699|Angptl4|57875|angiopoietin-like 4	BC025797|Angptl4|57875|angiopoietin-like 4	BC006611|Angptl4|57875|angiopoietin-like 4	BC021343|Angptl4|57875|angiopoietin-like 4	AK032491|Angptl4|57875|angiopoietin-like 4	AK132761|Angptl4|57875|angiopoietin-like 4	AK134419|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr4_+_135502353_135502412	1.27942	bHLH_family.p2	NM_008254|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK144768|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK145251|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK077842|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK132035|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK154033|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	S65036|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	BC025440|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase
mm9_v1_chr11_+_101107691_101107706	1.27445	bHLH_family.p2	BC036348|Vps25|28084|vacuolar protein sorting 25 (yeast)
mm9_v1_chr10_+_57514349_57514589	1.27279	bHLH_family.p2	NM_020561|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	Y08135|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK002455|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK152282|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139288|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139289|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK151683|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A
mm9_v1_chr16_-_23988680_23988725	1.27197	bHLH_family.p2	D38377|Bcl6|12053|B-cell leukemia/lymphoma 6	BC052315|Bcl6|12053|B-cell leukemia/lymphoma 6	NM_009744|Bcl6|12053|B-cell leukemia/lymphoma 6	AK039228|Bcl6|12053|B-cell leukemia/lymphoma 6	AK036975|Bcl6|12053|B-cell leukemia/lymphoma 6	AK151229|Bcl6|12053|B-cell leukemia/lymphoma 6
mm9_v1_chr11_+_61298978_61299017	1.27161	bHLH_family.p2	AK075659|Mfap4|76293|microfibrillar-associated protein 4
mm9_v1_chr15_+_102109859_102110015	1.27134	bHLH_family.p2	AK087550|Mfsd5|106073|major facilitator superfamily domain containing 5	AK089268|Mfsd5|106073|major facilitator superfamily domain containing 5	NM_134100|Mfsd5|106073|major facilitator superfamily domain containing 5	AK165774|Mfsd5|106073|major facilitator superfamily domain containing 5
mm9_v1_chr15_+_60654507_60654541	1.2709	bHLH_family.p2	AK050709|9930014A18Rik|320469|RIKEN cDNA 9930014A18 gene	AK046554|9930014A18Rik|320469|RIKEN cDNA 9930014A18 gene
mm9_v1_chr6_-_124813922_124813935	1.27076	bHLH_family.p2	BC031437|Gpr162|14788|G protein-coupled receptor 162	NM_013533|Gpr162|14788|G protein-coupled receptor 162
mm9_v1_chr6_-_108135548_108135588	1.27005	bHLH_family.p2	BC026981|Sumf1|58911|sulfatase modifying factor 1	AK160917|Sumf1|58911|sulfatase modifying factor 1	AK159192|Sumf1|58911|sulfatase modifying factor 1	AK161203|Sumf1|58911|sulfatase modifying factor 1	AK151874|Sumf1|58911|sulfatase modifying factor 1	NM_145937|Sumf1|58911|sulfatase modifying factor 1
mm9_v1_chrX_-_163820597_163820686	1.26866	bHLH_family.p2	AK019169|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK215156|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	BC024942|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK045007|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	NM_026662|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK029690|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2	AK012819|Prps2|110639|phosphoribosyl pyrophosphate synthetase 2
mm9_v1_chr15_+_34167908_34168078	1.26807	bHLH_family.p2	AK077269|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK079581|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	BC019120|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AF317418|Laptm4b|114128|lysosomal-associated protein transmembrane 4B
mm9_v1_chr1_+_137625754_137625832	1.26782	bHLH_family.p2	AK087436|Csrp1|13007|cysteine and glycine-rich protein 1	NM_007791|Csrp1|13007|cysteine and glycine-rich protein 1	AK149025|Csrp1|13007|cysteine and glycine-rich protein 1	AK147089|Csrp1|13007|cysteine and glycine-rich protein 1	AK168984|Csrp1|13007|cysteine and glycine-rich protein 1	AK168922|Csrp1|13007|cysteine and glycine-rich protein 1	AK077787|Csrp1|13007|cysteine and glycine-rich protein 1	AK169720|Csrp1|13007|cysteine and glycine-rich protein 1	BC006912|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr11_-_8564514_8564596	1.26492	bHLH_family.p2	AK052680|Tns3|319939|tensin 3	AK089717|Tns3|319939|tensin 3	NM_001083587|Tns3|319939|tensin 3
mm9_v1_chr2_+_31325763_31325817	1.26423	bHLH_family.p2	BC002074|Ass1|11898|argininosuccinate synthetase 1	NM_007494|Ass1|11898|argininosuccinate synthetase 1
mm9_v1_chr10_-_80306743_80306828	1.26166	bHLH_family.p2	BC072620|Lingo3|237403|leucine rich repeat and Ig domain containing 3	NM_001013758|Lingo3|237403|leucine rich repeat and Ig domain containing 3
mm9_v1_chr18_+_82723907_82723917	1.26146	bHLH_family.p2	AK147966|Mbp|17196|myelin basic protein
mm9_v1_chr17_-_31649139_31649255	1.25576	bHLH_family.p2	AK213574|Wdr4|57773|WD repeat domain 4	AK164160|Wdr4|57773|WD repeat domain 4	AJ271892|Wdr4|57773|WD repeat domain 4	AJ271893|Wdr4|57773|WD repeat domain 4	AK035125|Wdr4|57773|WD repeat domain 4	BC039272|Wdr4|57773|WD repeat domain 4	AK152271|Wdr4|57773|WD repeat domain 4	AK153161|Wdr4|57773|WD repeat domain 4	AK144821|Wdr4|57773|WD repeat domain 4
mm9_v1_chr11_-_118770859_118770872	1.25362	bHLH_family.p2	AK049926|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK160816|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK086669|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr12_+_77356170_77356369	1.25198	bHLH_family.p2	NM_138745|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK129012|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK042019|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr2_-_75542552_75542719	1.25132	bHLH_family.p2	BC003340|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK144247|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK029360|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK142347|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	BC026943|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	NM_010902|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	U20532|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr11_-_17111513_17111579	1.25035	bHLH_family.p2	AK165942|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK007324|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009146|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009896|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK017153|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	BC020037|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AF349950|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chrX_-_159267249_159267385	1.24991	bHLH_family.p2	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr11_+_53164518_53164596	1.24809	bHLH_family.p2	BC138999|Aff4|93736|AF4/FMR2 family, member 4	BC145490|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr2_-_172765592_172765841	1.24502	bHLH_family.p2	AK020411|Bmp7|12162|bone morphogenetic protein 7	X56906|Bmp7|12162|bone morphogenetic protein 7	BC010771|Bmp7|12162|bone morphogenetic protein 7	NM_007557|Bmp7|12162|bone morphogenetic protein 7
mm9_v1_chr8_+_87396009_87396156	1.24347	bHLH_family.p2	AK005954|Syce2|71846|synaptonemal complex central element protein 2	NM_001168246|Syce2|71846|synaptonemal complex central element protein 2	NM_027954|Syce2|71846|synaptonemal complex central element protein 2	BC132534|Syce2|71846|synaptonemal complex central element protein 2	BC094628|Syce2|71846|synaptonemal complex central element protein 2	AK167332|Syce2|71846|synaptonemal complex central element protein 2	NM_001168244|Syce2|71846|synaptonemal complex central element protein 2
mm9_v1_chr9_-_91260619_91260636	1.24179	bHLH_family.p2	NM_009573|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr11_+_88860710_88860807	1.24086	bHLH_family.p2	AK169562|Trim25|217069|tripartite motif-containing 25	NM_009546|Trim25|217069|tripartite motif-containing 25	AK154533|Trim25|217069|tripartite motif-containing 25	BC006908|Trim25|217069|tripartite motif-containing 25	BC034276|Trim25|217069|tripartite motif-containing 25	AK160898|Trim25|217069|tripartite motif-containing 25	AK172555|Trim25|217069|tripartite motif-containing 25	D63902|Trim25|217069|tripartite motif-containing 25
mm9_v1_chr11_-_93817153_93817305	1.23776	bHLH_family.p2	X68193|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK169120|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	BC086893|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK012447|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK150419|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in
mm9_v1_chr16_-_33967064_33967149	1.23696	bHLH_family.p2	BC003887|Umps|22247|uridine monophosphate synthetase	BC095981|Umps|22247|uridine monophosphate synthetase	AK159808|Umps|22247|uridine monophosphate synthetase	AK159955|Umps|22247|uridine monophosphate synthetase	AK035821|Umps|22247|uridine monophosphate synthetase	AK035997|Umps|22247|uridine monophosphate synthetase	AK090102|Umps|22247|uridine monophosphate synthetase	AK135187|Umps|22247|uridine monophosphate synthetase	NM_009471|Umps|22247|uridine monophosphate synthetase
mm9_v1_chr6_+_116288073_116288073	1.23625	bHLH_family.p2	AK165647|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr10_+_19868725_19868819	1.23396	bHLH_family.p2	NM_001198635|Mtap7|17761|microtubule-associated protein 7	NM_008635|Mtap7|17761|microtubule-associated protein 7	BC052637|Mtap7|17761|microtubule-associated protein 7	BC042771|Mtap7|17761|microtubule-associated protein 7	BC044733|Mtap7|17761|microtubule-associated protein 7	BC046555|Mtap7|17761|microtubule-associated protein 7	AK008182|Mtap7|17761|microtubule-associated protein 7	AK014575|Mtap7|17761|microtubule-associated protein 7	AB098611|Mtap7|17761|microtubule-associated protein 7	Y15197|Mtap7|17761|microtubule-associated protein 7
mm9_v1_chr15_-_10644312_10644406	1.23262	bHLH_family.p2	AK045733|Rai14|75646|retinoic acid induced 14	AK129333|Rai14|75646|retinoic acid induced 14	AK090343|Rai14|75646|retinoic acid induced 14	NM_001166408|Rai14|75646|retinoic acid induced 14
mm9_v1_chr12_+_70473032_70473193	1.23172	bHLH_family.p2	BC083112|Arf6|11845|ADP-ribosylation factor 6	NM_007481|Arf6|11845|ADP-ribosylation factor 6	AK156960|Arf6|11845|ADP-ribosylation factor 6	BC003478|Arf6|11845|ADP-ribosylation factor 6	D87903|Arf6|11845|ADP-ribosylation factor 6
mm9_v1_chr3_-_108029499_108029565	1.23051	bHLH_family.p2	BC030038|Sypl2|17306|synaptophysin-like 2	AB010140|Sypl2|17306|synaptophysin-like 2	NM_008596|Sypl2|17306|synaptophysin-like 2	AK082471|Sypl2|17306|synaptophysin-like 2	AK162663|Sypl2|17306|synaptophysin-like 2	AK052749|Sypl2|17306|synaptophysin-like 2	AK083422|Sypl2|17306|synaptophysin-like 2
mm9_v1_chr11_-_101846064_101846112	1.22285	bHLH_family.p2	AF280809|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK008734|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK170772|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	NM_028207|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	BC016269|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm9_v1_chr14_+_21871781_21871860	1.22261	bHLH_family.p2	AK009508|Adk|11534|adenosine kinase	AK157662|Adk|11534|adenosine kinase	AK028100|Adk|11534|adenosine kinase	AK139200|Adk|11534|adenosine kinase	AK032871|Adk|11534|adenosine kinase	BC009659|Adk|11534|adenosine kinase	NM_134079|Adk|11534|adenosine kinase	AY540996|Adk|11534|adenosine kinase
mm9_v1_chr14_+_12386094_12386130	1.22064	bHLH_family.p2	AK053271|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chrX_-_101017152_101017262	1.21958	bHLH_family.p2	AB265788|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	BC080678|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	BC096587|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr9_+_83728295_83728324	1.21733	bHLH_family.p2	NM_001110265|Ttk|22137|Ttk protein kinase	NM_009445|Ttk|22137|Ttk protein kinase	AK164093|Ttk|22137|Ttk protein kinase	AK049200|Ttk|22137|Ttk protein kinase	AK041487|Ttk|22137|Ttk protein kinase	BC058851|Ttk|22137|Ttk protein kinase
mm9_v1_chr8_-_87296172_87296219	1.21632	bHLH_family.p2	S81451|Nfix|18032|nuclear factor I/X
mm9_v1_chr3_-_129534032_129534091	1.21531	bHLH_family.p2	AK075923|Gar1|68147|GAR1 ribonucleoprotein homolog (yeast)	AK167001|Gar1|68147|GAR1 ribonucleoprotein homolog (yeast)	AK021256|Gar1|68147|GAR1 ribonucleoprotein homolog (yeast)
mm9_v1_chr11_-_103224633_103224824	1.2128	bHLH_family.p2	AK017636|Sh3d20|70559|SH3 domain containing 20	NM_183288|Sh3d20|70559|SH3 domain containing 20
mm9_v1_chr1_-_21951497_21951661	1.21275	bHLH_family.p2	AF263836|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	AY679158|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5
mm9_v1_chr4_+_15193231_15193387	1.2122	bHLH_family.p2	AK170682|Tmem64|100201|transmembrane protein 64	AK035894|Tmem64|100201|transmembrane protein 64	AK169861|Tmem64|100201|transmembrane protein 64
mm9_v1_chr11_-_94902584_94902717	1.20872	bHLH_family.p2	AF267660|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK002647|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	BC021764|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	NM_133667|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2
mm9_v1_chr2_+_112105869_112105981	1.20846	bHLH_family.p2	AK133006|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr11_-_114657186_114657223	1.20603	bHLH_family.p2	BC060053|Btbd17|72014|BTB (POZ) domain containing 17	BC122876|Btbd17|72014|BTB (POZ) domain containing 17	AK032100|Btbd17|72014|BTB (POZ) domain containing 17	NM_028055|Btbd17|72014|BTB (POZ) domain containing 17	AK046050|Btbd17|72014|BTB (POZ) domain containing 17	AK005160|Btbd17|72014|BTB (POZ) domain containing 17	BC057599|Btbd17|72014|BTB (POZ) domain containing 17
mm9_v1_chr11_-_115948258_115948310	1.20589	bHLH_family.p2	AK079300|Wbp2|22378|WW domain binding protein 2	AK151368|Wbp2|22378|WW domain binding protein 2	AK170317|Wbp2|22378|WW domain binding protein 2	NM_016852|Wbp2|22378|WW domain binding protein 2	U40826|Wbp2|22378|WW domain binding protein 2	AK004824|Wbp2|22378|WW domain binding protein 2	AK146572|Wbp2|22378|WW domain binding protein 2	AK170474|Wbp2|22378|WW domain binding protein 2	BC055058|Wbp2|22378|WW domain binding protein 2
mm9_v1_chr6_+_72047563_72047686	1.20372	bHLH_family.p2	AK165726|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_001035228|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_011375|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AF119416|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK159000|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK012961|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AB018048|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138557|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138559|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm9_v1_chr2_+_160557441_160557517	1.20309	bHLH_family.p2	AF027185|Plcg1|18803|phospholipase C, gamma 1
mm9_v1_chr11_-_94410463_94410520	1.20237	bHLH_family.p2	BC139274|Rsad1|237926|radical S-adenosyl methionine domain containing 1	BC139276|Rsad1|237926|radical S-adenosyl methionine domain containing 1	BC145594|Rsad1|237926|radical S-adenosyl methionine domain containing 1	AK148401|Rsad1|237926|radical S-adenosyl methionine domain containing 1	AK046706|Rsad1|237926|radical S-adenosyl methionine domain containing 1	NM_001013381|Rsad1|237926|radical S-adenosyl methionine domain containing 1
mm9_v1_chrX_+_131135770_131135834	1.20016	bHLH_family.p2	AK141861|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK164115|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK168116|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	BC005461|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK169104|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK077716|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	NM_019868|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2
mm9_v1_chrX_+_133200982_133201022	1.1996	bHLH_family.p2	AK003156|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK017585|Tceal3|594844|transcription elongation factor A (SII)-like 3	BC027131|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr6_-_137597775_137597813	1.19612	bHLH_family.p2	L21671|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr11_-_3763899_3763908	1.19573	bHLH_family.p2	AK049816|Osbp2|74309|oxysterol binding protein 2	NM_152818|Osbp2|74309|oxysterol binding protein 2
mm9_v1_chr1_-_121401236_121401390	1.19512	bHLH_family.p2	AK159993|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AF174296|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	NM_022327|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)
mm9_v1_chr15_-_102181072_102181189	1.18847	bHLH_family.p2	AK134406|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK034591|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	BC018191|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK083401|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK166118|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK165243|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK088247|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK083537|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK079849|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	BC025501|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK169523|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	AK087134|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia	NM_153416|Aaas|223921|achalasia, adrenocortical insufficiency, alacrimia
mm9_v1_chr1_-_75502814_75502969	1.18513	bHLH_family.p2	AK029863|Obsl1|98733|obscurin-like 1	AK162473|Obsl1|98733|obscurin-like 1	AK034852|Obsl1|98733|obscurin-like 1
mm9_v1_chr3_+_89195758_89195785	1.18458	bHLH_family.p2	
mm9_v1_chr3_+_96531494_96531647	1.17989	bHLH_family.p2	NM_026406|Rnf115|67845|ring finger protein 115	BC023113|Rnf115|67845|ring finger protein 115	AK042216|Rnf115|67845|ring finger protein 115	AK011584|Rnf115|67845|ring finger protein 115	AK131966|Rnf115|67845|ring finger protein 115	AK159772|Rnf115|67845|ring finger protein 115
mm9_v1_chr6_+_114081227_114081234	1.17648	bHLH_family.p2	AK140423|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK053078|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	NM_172890|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr4_-_82151657_82151695	1.17458	bHLH_family.p2	AK148573|Nfib|18028|nuclear factor I/B	Y07687|Nfib|18028|nuclear factor I/B	AK047576|Nfib|18028|nuclear factor I/B
mm9_v1_chr1_+_34529567_34529633	1.16494	bHLH_family.p2	AK014043|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr6_-_146450669_146450707	1.16457	bHLH_family.p2	AK169446|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2
mm9_v1_chr6_+_4455686_4455760	1.15474	bHLH_family.p2	AK159212|Col1a2|12843|collagen, type I, alpha 2	AK161017|Col1a2|12843|collagen, type I, alpha 2	NM_007743|Col1a2|12843|collagen, type I, alpha 2	AK160098|Col1a2|12843|collagen, type I, alpha 2	AK160946|Col1a2|12843|collagen, type I, alpha 2	AK159578|Col1a2|12843|collagen, type I, alpha 2	AK031577|Col1a2|12843|collagen, type I, alpha 2	AK132496|Col1a2|12843|collagen, type I, alpha 2	AK157724|Col1a2|12843|collagen, type I, alpha 2	AK159408|Col1a2|12843|collagen, type I, alpha 2	AK160787|Col1a2|12843|collagen, type I, alpha 2	AK160788|Col1a2|12843|collagen, type I, alpha 2	AK160790|Col1a2|12843|collagen, type I, alpha 2	AK161605|Col1a2|12843|collagen, type I, alpha 2	AK164808|Col1a2|12843|collagen, type I, alpha 2	BC007158|Col1a2|12843|collagen, type I, alpha 2	BC042503|Col1a2|12843|collagen, type I, alpha 2	X58251|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr3_-_27052733_27052775	1.15395	bHLH_family.p2	AK040174|Ect2|13605|ect2 oncogene	BC045614|Ect2|13605|ect2 oncogene	BC025565|Ect2|13605|ect2 oncogene	BC032155|Ect2|13605|ect2 oncogene	BC023881|Ect2|13605|ect2 oncogene	AK157718|Ect2|13605|ect2 oncogene	L11316|Ect2|13605|ect2 oncogene	AK220452|Ect2|13605|ect2 oncogene	NM_001177625|Ect2|13605|ect2 oncogene	NM_007900|Ect2|13605|ect2 oncogene
mm9_v1_chr8_-_124431245_124431547	1.15054	bHLH_family.p2	AK148134|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB023409|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB017189|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr14_+_70977443_70977712	1.14922	bHLH_family.p2	AK137014|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK089446|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	NM_153136|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK155086|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK157937|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK145997|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18
mm9_v1_chr2_+_18598882_18599030	1.14845	bHLH_family.p2	BC053708|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr8_-_11312729_11312825	1.14833	bHLH_family.p2	J04694|Col4a1|12826|collagen, type IV, alpha 1	AK142097|Col4a1|12826|collagen, type IV, alpha 1	J03758|Col4a1|12826|collagen, type IV, alpha 1	AK147284|Col4a1|12826|collagen, type IV, alpha 1	AK147355|Col4a1|12826|collagen, type IV, alpha 1	X06777|Col4a1|12826|collagen, type IV, alpha 1	AK146487|Col4a1|12826|collagen, type IV, alpha 1	AK159130|Col4a1|12826|collagen, type IV, alpha 1	AK147661|Col4a1|12826|collagen, type IV, alpha 1	NM_009931|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr4_-_133574655_133574730	1.14399	bHLH_family.p2	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chr7_+_114514258_114514338	1.14338	bHLH_family.p2	AK089115|Syt9|60510|synaptotagmin IX	NM_021889|Syt9|60510|synaptotagmin IX	AK156631|Syt9|60510|synaptotagmin IX	BC132495|Syt9|60510|synaptotagmin IX	BC137904|Syt9|60510|synaptotagmin IX	BC145024|Syt9|60510|synaptotagmin IX
mm9_v1_chr11_-_113427050_113427128	1.14192	bHLH_family.p2	AK192534|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK007986|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK170673|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK049368|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	AK036999|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	BC019647|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	BC031751|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	NM_001166503|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11	NM_027216|Slc39a11|69806|solute carrier family 39 (metal ion transporter), member 11
mm9_v1_chr1_+_173155184_173155238	1.13886	bHLH_family.p2	NM_013474|Apoa2|11807|apolipoprotein A-II	M79361|Apoa2|11807|apolipoprotein A-II	M79362|Apoa2|11807|apolipoprotein A-II	AK145823|Apoa2|11807|apolipoprotein A-II	X62772|Apoa2|11807|apolipoprotein A-II	BC031786|Apoa2|11807|apolipoprotein A-II
mm9_v1_chr14_+_75576599_75576717	1.13564	bHLH_family.p2	AK088202|Lcp1|18826|lymphocyte cytosolic protein 1	U82610|Lcp1|18826|lymphocyte cytosolic protein 1	AK169728|Lcp1|18826|lymphocyte cytosolic protein 1	AK171751|Lcp1|18826|lymphocyte cytosolic protein 1	AK030996|Lcp1|18826|lymphocyte cytosolic protein 1	AK169972|Lcp1|18826|lymphocyte cytosolic protein 1	AK167261|Lcp1|18826|lymphocyte cytosolic protein 1	AK153061|Lcp1|18826|lymphocyte cytosolic protein 1	AK153082|Lcp1|18826|lymphocyte cytosolic protein 1	AK151542|Lcp1|18826|lymphocyte cytosolic protein 1	AK089922|Lcp1|18826|lymphocyte cytosolic protein 1	AK151720|Lcp1|18826|lymphocyte cytosolic protein 1	AK152668|Lcp1|18826|lymphocyte cytosolic protein 1	AK152891|Lcp1|18826|lymphocyte cytosolic protein 1	AK152902|Lcp1|18826|lymphocyte cytosolic protein 1	AK168062|Lcp1|18826|lymphocyte cytosolic protein 1	AK153206|Lcp1|18826|lymphocyte cytosolic protein 1	AK169833|Lcp1|18826|lymphocyte cytosolic protein 1	AK030806|Lcp1|18826|lymphocyte cytosolic protein 1	AK151155|Lcp1|18826|lymphocyte cytosolic protein 1
mm9_v1_chr11_+_54251680_54251744	1.13444	bHLH_family.p2	NM_173753|Fnip1|216742|folliculin interacting protein 1	BC079892|Fnip1|216742|folliculin interacting protein 1	AK122574|Fnip1|216742|folliculin interacting protein 1
mm9_v1_chr17_+_35373506_35373704	1.13203	bHLH_family.p2	NM_023179|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC020190|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC062380|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	AK005109|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC049587|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	AK011945|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2
mm9_v1_chr3_+_115710360_115710449	1.12796	bHLH_family.p2	NM_001163515|Extl2|58193|exostoses (multiple)-like 2	NM_021388|Extl2|58193|exostoses (multiple)-like 2	AK159281|Extl2|58193|exostoses (multiple)-like 2	AK028677|Extl2|58193|exostoses (multiple)-like 2	AK161866|Extl2|58193|exostoses (multiple)-like 2	BC031438|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr9_+_43942734_43942753	1.12779	bHLH_family.p2	NM_023061|Mcam|84004|melanoma cell adhesion molecule	AB035508|Mcam|84004|melanoma cell adhesion molecule	AB035509|Mcam|84004|melanoma cell adhesion molecule	BC026985|Mcam|84004|melanoma cell adhesion molecule
mm9_v1_chr11_-_96805092_96805165	1.12665	bHLH_family.p2	AK154443|Pnpo|103711|pyridoxine 5'-phosphate oxidase
mm9_v1_chr12_+_86814822_86814862	1.12095	bHLH_family.p2	AK154418|Fos|14281|FBJ osteosarcoma oncogene	BC029814|Fos|14281|FBJ osteosarcoma oncogene	NM_010234|Fos|14281|FBJ osteosarcoma oncogene
mm9_v1_chr5_+_38611707_38611872	1.11986	bHLH_family.p2	NM_025281|Lyar|17089|Ly1 antibody reactive clone	S60885|Lyar|17089|Ly1 antibody reactive clone	AK006373|Lyar|17089|Ly1 antibody reactive clone	AK211108|Lyar|17089|Ly1 antibody reactive clone	AK076727|Lyar|17089|Ly1 antibody reactive clone
mm9_v1_chr11_+_101107635_101107647	1.11697	bHLH_family.p2	NM_019444|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr8_-_73290529_73290564	1.11287	bHLH_family.p2	AF309649|Ifi30|65972|interferon gamma inducible protein 30	BC054852|Ifi30|65972|interferon gamma inducible protein 30	AF290973|Ifi30|65972|interferon gamma inducible protein 30	AK156914|Ifi30|65972|interferon gamma inducible protein 30	AK077725|Ifi30|65972|interferon gamma inducible protein 30	NM_023065|Ifi30|65972|interferon gamma inducible protein 30
mm9_v1_chr3_-_57651621_57651757	1.11027	bHLH_family.p2	NM_019410|Pfn2|18645|profilin 2
mm9_v1_chr15_+_81633102_81633182	1.10458	bHLH_family.p2	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr2_+_164793698_164793753	1.10084	bHLH_family.p2	AK165769|Slc12a5|57138|solute carrier family 12, member 5	AK122460|Slc12a5|57138|solute carrier family 12, member 5
mm9_v1_chr4_-_53172748_53172872	1.09809	bHLH_family.p2	AK051920|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1	NM_013454|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr6_-_85283412_85283433	1.09743	bHLH_family.p2	AK036285|Sfxn5|94282|sideroflexin 5	AK043706|Sfxn5|94282|sideroflexin 5	AK082073|Sfxn5|94282|sideroflexin 5	AK038793|Sfxn5|94282|sideroflexin 5	NM_178639|Sfxn5|94282|sideroflexin 5
mm9_v1_chr3_+_96531649_96531738	1.09635	bHLH_family.p2	AK008329|Rnf115|67845|ring finger protein 115
mm9_v1_chr2_+_33071451_33071671	1.09518	bHLH_family.p2	AK155464|Angptl2|26360|angiopoietin-like 2	NM_011923|Angptl2|26360|angiopoietin-like 2	AK037265|Angptl2|26360|angiopoietin-like 2	AK011976|Angptl2|26360|angiopoietin-like 2	BC138609|Angptl2|26360|angiopoietin-like 2	BC138610|Angptl2|26360|angiopoietin-like 2
mm9_v1_chr6_+_116158049_116158172	1.09497	bHLH_family.p2	NM_026585|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	AK145716|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	AK168388|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	AK038318|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	BC049979|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	AK161181|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	AK011156|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	BC056942|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	BC040393|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed	AK163765|D6Wsu116e|28006|DNA segment, Chr 6, Wayne State University 116, expressed
mm9_v1_chrX_+_126284271_126284381	1.09398	bHLH_family.p2	AK153986|Diap2|54004|diaphanous homolog 2 (Drosophila)	NM_172493|Diap2|54004|diaphanous homolog 2 (Drosophila)	AK088648|Diap2|54004|diaphanous homolog 2 (Drosophila)	AY312280|Diap2|54004|diaphanous homolog 2 (Drosophila)	BC100759|Diap2|54004|diaphanous homolog 2 (Drosophila)
mm9_v1_chr18_+_75527015_75527182	1.09387	bHLH_family.p2	NM_001042660|Smad7|17131|MAD homolog 7 (Drosophila)	AK013237|Smad7|17131|MAD homolog 7 (Drosophila)	AJ000550|Smad7|17131|MAD homolog 7 (Drosophila)
mm9_v1_chr8_+_87561055_87561132	1.09204	bHLH_family.p2	NM_001122843|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	BC003275|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr5_+_115224911_115225148	1.0909	bHLH_family.p2	AK039432|Ankrd13a|68420|ankyrin repeat domain 13a	AK156539|Ankrd13a|68420|ankyrin repeat domain 13a	BC049187|Ankrd13a|68420|ankyrin repeat domain 13a	BC061692|Ankrd13a|68420|ankyrin repeat domain 13a	NM_026718|Ankrd13a|68420|ankyrin repeat domain 13a
mm9_v1_chr7_+_134005943_134005961	1.09032	bHLH_family.p2	AK135526|Hirip3|233876|HIRA interacting protein 3	AK045122|Hirip3|233876|HIRA interacting protein 3	AK161657|Hirip3|233876|HIRA interacting protein 3
mm9_v1_chrX_+_12858142_12858215	1.08814	bHLH_family.p2	AK140990|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	NM_010028|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	Z38117|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	AK163250|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC150862|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC172016|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	L25126|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr14_+_58691522_58691522	1.08391	bHLH_family.p2	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr15_+_34167780_34167904	1.08356	bHLH_family.p2	NM_033521|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK077933|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	EU561010|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK166014|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK082807|Laptm4b|114128|lysosomal-associated protein transmembrane 4B	AK146868|Laptm4b|114128|lysosomal-associated protein transmembrane 4B
mm9_v1_chr7_+_51640108_51640216	1.08214	bHLH_family.p2	D45858|Syt3|20981|synaptotagmin III	BC051969|Syt3|20981|synaptotagmin III
mm9_v1_chr2_+_156601175_156601221	1.08166	bHLH_family.p2	AK007972|Myl9|98932|myosin, light polypeptide 9, regulatory	AK020258|Myl9|98932|myosin, light polypeptide 9, regulatory	NM_172118|Myl9|98932|myosin, light polypeptide 9, regulatory
mm9_v1_chr1_-_121401172_121401233	1.08111	bHLH_family.p2	AK205791|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	BC006907|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AK017698|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AK033193|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)	AK172364|Ralb|64143|v-ral simian leukemia viral oncogene homolog B (ras related)
mm9_v1_chr8_+_18846524_18846553	1.07943	bHLH_family.p2	AK152889|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK003649|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK170093|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK152709|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	BC031987|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
mm9_v1_chr16_-_4559511_4559853	1.07458	bHLH_family.p2	AK053091|Tcfap4|83383|transcription factor AP4	BC054777|Tcfap4|83383|transcription factor AP4	BC047270|Tcfap4|83383|transcription factor AP4	AF161262|Tcfap4|83383|transcription factor AP4	NM_031182|Tcfap4|83383|transcription factor AP4	AK166424|Tcfap4|83383|transcription factor AP4
mm9_v1_chr14_-_58364879_58364959	1.07283	bHLH_family.p2	AK164789|Lats2|50523|large tumor suppressor 2	BC053028|Lats2|50523|large tumor suppressor 2	AK029966|Lats2|50523|large tumor suppressor 2	AK029242|Lats2|50523|large tumor suppressor 2	AK029870|Lats2|50523|large tumor suppressor 2	AK163607|Lats2|50523|large tumor suppressor 2	BC024819|Lats2|50523|large tumor suppressor 2	AK081190|Lats2|50523|large tumor suppressor 2	NM_015771|Lats2|50523|large tumor suppressor 2
mm9_v1_chr3_-_126865105_126865154	1.07239	bHLH_family.p2	AK081244|Ank2|109676|ankyrin 2, brain
mm9_v1_chrX_-_7722800_7722927	1.06871	bHLH_family.p2	BC006580|Rbm3|19652|RNA binding motif protein 3	BC086491|Rbm3|19652|RNA binding motif protein 3	BC059098|Rbm3|19652|RNA binding motif protein 3	AK167800|Rbm3|19652|RNA binding motif protein 3	AK088031|Rbm3|19652|RNA binding motif protein 3	AK003720|Rbm3|19652|RNA binding motif protein 3	AK007354|Rbm3|19652|RNA binding motif protein 3	AK049575|Rbm3|19652|RNA binding motif protein 3	AK167967|Rbm3|19652|RNA binding motif protein 3	AK168338|Rbm3|19652|RNA binding motif protein 3	AK133795|Rbm3|19652|RNA binding motif protein 3	AK168285|Rbm3|19652|RNA binding motif protein 3	AK154044|Rbm3|19652|RNA binding motif protein 3	BC106176|Rbm3|19652|RNA binding motif protein 3	NM_001166409|Rbm3|19652|RNA binding motif protein 3	NM_001166410|Rbm3|19652|RNA binding motif protein 3	NM_001166411|Rbm3|19652|RNA binding motif protein 3	NM_016809|Rbm3|19652|RNA binding motif protein 3
mm9_v1_chr6_-_23789419_23789464	1.06646	bHLH_family.p2	AB098623|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291946|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr4_+_151699834_151699937	1.06316	bHLH_family.p2	BC096390|Rpl22|19934|ribosomal protein L22
mm9_v1_chr8_+_89997055_89997060	1.06267	bHLH_family.p2	AK082312|C230036H16Rik|434335|RIKEN cDNA C230036H16 gene
mm9_v1_chr9_+_53192102_53192318	1.05959	bHLH_family.p2	NM_212445|Kdelc2|68304|KDEL (Lys-Asp-Glu-Leu) containing 2	AK075811|Kdelc2|68304|KDEL (Lys-Asp-Glu-Leu) containing 2
mm9_v1_chrX_+_136145155_136145229	1.0559	bHLH_family.p2	AB041548|Rnf128|66889|ring finger protein 128	AK004847|Rnf128|66889|ring finger protein 128	AK018582|Rnf128|66889|ring finger protein 128	NM_023270|Rnf128|66889|ring finger protein 128	AK146266|Rnf128|66889|ring finger protein 128	AY112656|Rnf128|66889|ring finger protein 128	AK167031|Rnf128|66889|ring finger protein 128	BC010477|Rnf128|66889|ring finger protein 128	AK008312|Rnf128|66889|ring finger protein 128
mm9_v1_chr18_+_36441115_36441157	1.05392	bHLH_family.p2	AK075821|Pura|19290|purine rich element binding protein A
mm9_v1_chr4_-_99322703_99322718	1.05282	bHLH_family.p2	AK013270|2810439L12Rik|72763|RIKEN cDNA 2810439L12 gene
mm9_v1_chr6_-_23789048_23789235	1.04735	bHLH_family.p2	AF000969|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	BC047394|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AY072800|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK038568|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291947|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr4_+_147965596_147965685	1.04385	bHLH_family.p2	AK028359|Srm|20810|spermidine synthase	NM_009272|Srm|20810|spermidine synthase	AK051101|Srm|20810|spermidine synthase	BC005566|Srm|20810|spermidine synthase	L19311|Srm|20810|spermidine synthase	AK146395|Srm|20810|spermidine synthase
mm9_v1_chr16_-_20716002_20716191	1.04097	bHLH_family.p2	AK155104|Clcn2|12724|chloride channel 2	AK171231|Clcn2|12724|chloride channel 2	BC120699|Clcn2|12724|chloride channel 2	BC137625|Clcn2|12724|chloride channel 2	AF139724|Clcn2|12724|chloride channel 2	AF097415|Clcn2|12724|chloride channel 2	AK172148|Clcn2|12724|chloride channel 2
mm9_v1_chr5_-_148211881_148212064	1.03675	bHLH_family.p2	AK149292|Flt3|14255|FMS-like tyrosine kinase 3	AK045865|Flt3|14255|FMS-like tyrosine kinase 3	X59398|Flt3|14255|FMS-like tyrosine kinase 3	AK163640|Flt3|14255|FMS-like tyrosine kinase 3	NM_010229|Flt3|14255|FMS-like tyrosine kinase 3
mm9_v1_chr16_-_52453104_52453136	1.03258	bHLH_family.p2	AK053201|Alcam|11658|activated leukocyte cell adhesion molecule	AK030851|Alcam|11658|activated leukocyte cell adhesion molecule	NM_009655|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr6_+_141472906_141473070	1.03084	bHLH_family.p2	AK045782|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	NM_001177772|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	NM_021471|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	AK048926|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	AK161010|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	BC078456|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1	AY007379|Slco1c1|58807|solute carrier organic anion transporter family, member 1c1
mm9_v1_chr1_+_193730645_193730708	1.03039	bHLH_family.p2	AK145100|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	NM_009579|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	BC052166|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1
mm9_v1_chr9_-_22193627_22193649	1.02786	bHLH_family.p2	NM_028390|Anln|68743|anillin, actin binding protein
mm9_v1_chr4_+_140257340_140257464	1.02628	bHLH_family.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr5_+_64550623_64550689	1.02621	bHLH_family.p2	AK122445|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr9_-_54509453_54509528	1.02588	bHLH_family.p2	AK129179|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	BC057322|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	AK054103|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr6_-_88848650_88848773	1.0216	bHLH_family.p2	AF004105|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK129039|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK077801|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088378|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	BC055318|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK145176|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088156|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146187|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	D86725|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146375|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK037751|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	NM_008564|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)
mm9_v1_chr10_+_120802099_120802365	1.01924	bHLH_family.p2	AK040524|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK049162|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK054046|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	NM_029364|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK030773|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK135016|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK170791|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	BC055328|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK087265|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK149863|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165917|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK169485|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165180|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK164907|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK083597|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK159562|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK197322|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK200155|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK205939|Gns|75612|glucosamine (N-acetyl)-6-sulfatase
mm9_v1_chr8_+_108583449_108583790	1.0183	bHLH_family.p2	NM_010901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK147708|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK155087|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK051602|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK134054|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK039929|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK220187|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120900|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	D85612|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887629|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887630|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887631|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
mm9_v1_chrX_+_136991190_136991343	1.01733	bHLH_family.p2	BC054772|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1	AB025048|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1	AK168036|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1	AK185462|Prps1|19139|phosphoribosyl pyrophosphate synthetase 1
mm9_v1_chr10_+_98377759_98377828	1.01674	bHLH_family.p2	AK133920|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	NM_026482|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170163|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	BC024831|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170926|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr11_+_69727523_69727631	1.01617	bHLH_family.p2	AF153696|Gps2|56310|G protein pathway suppressor 2
mm9_v1_chr5_+_139856534_139856673	1.01617	bHLH_family.p2	AK155280|Gpr146|80290|G protein-coupled receptor 146	AK154478|Gpr146|80290|G protein-coupled receptor 146	AK046512|Gpr146|80290|G protein-coupled receptor 146	AK089232|Gpr146|80290|G protein-coupled receptor 146	AK154708|Gpr146|80290|G protein-coupled receptor 146	AK155876|Gpr146|80290|G protein-coupled receptor 146	NM_030258|Gpr146|80290|G protein-coupled receptor 146	BC003323|Gpr146|80290|G protein-coupled receptor 146	AK050034|Gpr146|80290|G protein-coupled receptor 146	AK087100|Gpr146|80290|G protein-coupled receptor 146	AK155212|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr4_-_82151590_82151637	1.0135	bHLH_family.p2	Y07685|Nfib|18028|nuclear factor I/B
mm9_v1_chr1_-_182126032_182126150	1.01138	bHLH_family.p2	AK004791|Adck3|67426|aarF domain containing kinase 3	AK014605|Adck3|67426|aarF domain containing kinase 3	BC030937|Adck3|67426|aarF domain containing kinase 3	NM_023341|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chr15_+_74551611_74551685	1.01085	bHLH_family.p2	BC047266|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene	NM_198607|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene
mm9_v1_chr14_-_27354398_27354416	1.01033	bHLH_family.p2	AK052158|Slmap|83997|sarcolemma associated protein
mm9_v1_chr11_-_84326869_84327030	1.00972	bHLH_family.p2	AY306199|Aatf|56321|apoptosis antagonizing transcription factor	BC025080|Aatf|56321|apoptosis antagonizing transcription factor	AK141334|Aatf|56321|apoptosis antagonizing transcription factor	AF222801|Aatf|56321|apoptosis antagonizing transcription factor	NM_019816|Aatf|56321|apoptosis antagonizing transcription factor	AK077789|Aatf|56321|apoptosis antagonizing transcription factor
mm9_v1_chr13_+_23625779_23625779	1.00934	bHLH_family.p2	BC125011|Hist1h2af|319173|histone cluster 1, H2af	NM_175661|Hist1h2af|319173|histone cluster 1, H2af
mm9_v1_chr3_-_107889507_107889627	1.00891	bHLH_family.p2	BC049119|Ampd2|109674|adenosine monophosphate deaminase 2	NM_028779|Ampd2|109674|adenosine monophosphate deaminase 2	AK169980|Ampd2|109674|adenosine monophosphate deaminase 2	AK004759|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr7_-_87377430_87377540	1.00387	bHLH_family.p2	AF173010|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AB006463|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK165472|Cib1|23991|calcium and integrin binding 1 (calmyrin)	BC003714|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK010345|Cib1|23991|calcium and integrin binding 1 (calmyrin)	BC054385|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK027915|Cib1|23991|calcium and integrin binding 1 (calmyrin)	NM_011870|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK088450|Cib1|23991|calcium and integrin binding 1 (calmyrin)	AK152805|Cib1|23991|calcium and integrin binding 1 (calmyrin)
mm9_v1_chr11_-_120494842_120494902	0.999545	bHLH_family.p2	BC052633|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	NM_010756|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm9_v1_chr2_+_164323044_164323060	0.997214	bHLH_family.p2	AK162573|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC016520|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	BC034175|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr2_-_30141839_30141875	0.995711	bHLH_family.p2	AK077581|Dolk|227697|dolichol kinase	AK144705|Dolk|227697|dolichol kinase	NM_177648|Dolk|227697|dolichol kinase
mm9_v1_chr5_-_144076737_144077070	0.994779	bHLH_family.p2	AK054218|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC082321|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC058940|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK050733|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC079853|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK041667|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK172614|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK086571|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK144964|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK053801|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK087531|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	NM_172726|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene
mm9_v1_chr2_-_13192850_13192974	0.991879	bHLH_family.p2	X63039|Rsu1|20163|Ras suppressor protein 1	BC003827|Rsu1|20163|Ras suppressor protein 1	NM_009105|Rsu1|20163|Ras suppressor protein 1	AK150011|Rsu1|20163|Ras suppressor protein 1	AK149835|Rsu1|20163|Ras suppressor protein 1	AK152655|Rsu1|20163|Ras suppressor protein 1	AK009288|Rsu1|20163|Ras suppressor protein 1	AK011857|Rsu1|20163|Ras suppressor protein 1	AK135491|Rsu1|20163|Ras suppressor protein 1	AK169076|Rsu1|20163|Ras suppressor protein 1
mm9_v1_chr11_+_101107726_101107744	0.988056	bHLH_family.p2	AK003810|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AF146523|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC051201|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC069992|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AJ250490|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr17_-_90487479_90487653	0.987762	bHLH_family.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr2_-_17652669_17652710	0.987759	bHLH_family.p2	BC025863|Nebl|74103|nebulette	AK036214|Nebl|74103|nebulette	AK004645|Nebl|74103|nebulette	NM_028757|Nebl|74103|nebulette
mm9_v1_chr7_+_127245860_127245969	0.98755	bHLH_family.p2	AK080630|Tmem159|233806|transmembrane protein 159	AK078811|Tmem159|233806|transmembrane protein 159	AK167192|Tmem159|233806|transmembrane protein 159	AK142240|Tmem159|233806|transmembrane protein 159	AK150434|Tmem159|233806|transmembrane protein 159	AK087074|Tmem159|233806|transmembrane protein 159	AK158048|Tmem159|233806|transmembrane protein 159	AK158249|Tmem159|233806|transmembrane protein 159	AK158250|Tmem159|233806|transmembrane protein 159	BC006689|Tmem159|233806|transmembrane protein 159	NM_145586|Tmem159|233806|transmembrane protein 159	AK171378|Tmem159|233806|transmembrane protein 159
mm9_v1_chr11_+_119129350_119129459	0.985178	bHLH_family.p2	AK140042|Gaa|14387|glucosidase, alpha, acid	BC010210|Gaa|14387|glucosidase, alpha, acid	AK207669|Gaa|14387|glucosidase, alpha, acid	AK150970|Gaa|14387|glucosidase, alpha, acid	AK139333|Gaa|14387|glucosidase, alpha, acid	AK197627|Gaa|14387|glucosidase, alpha, acid	AK179414|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr15_+_3220994_3220998	0.98492	bHLH_family.p2	AK002450|Sepp1|20363|selenoprotein P, plasma, 1	AK077265|Sepp1|20363|selenoprotein P, plasma, 1	AK146774|Sepp1|20363|selenoprotein P, plasma, 1	AK148623|Sepp1|20363|selenoprotein P, plasma, 1	AK159269|Sepp1|20363|selenoprotein P, plasma, 1	AK159524|Sepp1|20363|selenoprotein P, plasma, 1	AK159911|Sepp1|20363|selenoprotein P, plasma, 1	AK159935|Sepp1|20363|selenoprotein P, plasma, 1	AK167611|Sepp1|20363|selenoprotein P, plasma, 1	AK168631|Sepp1|20363|selenoprotein P, plasma, 1	AK168747|Sepp1|20363|selenoprotein P, plasma, 1	AK168926|Sepp1|20363|selenoprotein P, plasma, 1	AK169011|Sepp1|20363|selenoprotein P, plasma, 1	AK169158|Sepp1|20363|selenoprotein P, plasma, 1	AK169362|Sepp1|20363|selenoprotein P, plasma, 1	AK159894|Sepp1|20363|selenoprotein P, plasma, 1	AK168583|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr1_-_13650563_13650617	0.984091	bHLH_family.p2	AK143912|Lactb2|212442|lactamase, beta 2	BC004045|Lactb2|212442|lactamase, beta 2	NM_145381|Lactb2|212442|lactamase, beta 2	AK088932|Lactb2|212442|lactamase, beta 2	AK090091|Lactb2|212442|lactamase, beta 2
mm9_v1_chr10_-_6373388_6373465	0.983249	bHLH_family.p2	AK075931|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK160025|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK036284|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK028211|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK038579|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170785|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170786|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_172308|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr2_-_4985090_4985137	0.981627	bHLH_family.p2	AY071834|Optn|71648|optineurin
mm9_v1_chr11_-_100831909_100831946	0.98133	bHLH_family.p2	BC110698|Ptrf|19285|polymerase I and transcript release factor	AK169463|Ptrf|19285|polymerase I and transcript release factor	NM_008986|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr2_+_20441139_20441459	0.978947	bHLH_family.p2	NM_001177630|Etl4|208618|enhancer trap locus 4	NM_001177631|Etl4|208618|enhancer trap locus 4	AK147510|Etl4|208618|enhancer trap locus 4	AB093289|Etl4|208618|enhancer trap locus 4	BC158051|Etl4|208618|enhancer trap locus 4	BC172143|Etl4|208618|enhancer trap locus 4	BC050016|Etl4|208618|enhancer trap locus 4	AK052733|Etl4|208618|enhancer trap locus 4
mm9_v1_chr5_-_100407805_100407989	0.977585	bHLH_family.p2	U11273|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK135733|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK077409|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	BC049098|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077265|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077266|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077267|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_007516|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr14_+_121310342_121310481	0.977355	bHLH_family.p2	AK161668|Ipo5|70572|importin 5	NM_023579|Ipo5|70572|importin 5	AK079134|Ipo5|70572|importin 5	AK049422|Ipo5|70572|importin 5	AK169664|Ipo5|70572|importin 5	AK053681|Ipo5|70572|importin 5	AK017701|Ipo5|70572|importin 5	AK167303|Ipo5|70572|importin 5	AF294327|Ipo5|70572|importin 5	BC052392|Ipo5|70572|importin 5
mm9_v1_chr15_-_93167238_93167272	0.974311	bHLH_family.p2	BC002192|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr7_-_16872094_16872145	0.974064	bHLH_family.p2	AK134892|Ccdc9|243846|coiled-coil domain containing 9	NM_001136471|Ccdc9|243846|coiled-coil domain containing 9
mm9_v1_chr17_-_56615875_56615935	0.973288	bHLH_family.p2	NM_011218|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr15_+_99803329_99803358	0.972849	bHLH_family.p2	AK139909|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr11_-_95448869_95449017	0.968438	bHLH_family.p2	AF105292|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	BC038365|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	AK037248|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	NM_033217|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)
mm9_v1_chr3_+_121426422_121426632	0.968393	bHLH_family.p2	BC024886|F3|14066|coagulation factor III	NM_010171|F3|14066|coagulation factor III	BC016397|F3|14066|coagulation factor III	M26071|F3|14066|coagulation factor III	AK137642|F3|14066|coagulation factor III	AK144872|F3|14066|coagulation factor III	M57896|F3|14066|coagulation factor III	CT010367|F3|14066|coagulation factor III
mm9_v1_chr8_+_11312828_11312937	0.964111	bHLH_family.p2	AK053858|Col4a2|12827|collagen, type IV, alpha 2	NM_009932|Col4a2|12827|collagen, type IV, alpha 2	AK164096|Col4a2|12827|collagen, type IV, alpha 2	BC080789|Col4a2|12827|collagen, type IV, alpha 2	BC107685|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chr15_+_88692885_88692944	0.963851	bHLH_family.p2	AK079623|Pim3|223775|proviral integration site 3	AK149478|Pim3|223775|proviral integration site 3	AK159399|Pim3|223775|proviral integration site 3	AK159600|Pim3|223775|proviral integration site 3	AK159670|Pim3|223775|proviral integration site 3	BC026639|Pim3|223775|proviral integration site 3
mm9_v1_chr4_-_129419450_129419570	0.963097	bHLH_family.p2	BC002051|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17046|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK146815|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17961|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK150687|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK152084|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	NM_011317|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK044927|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK050520|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK137122|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1
mm9_v1_chr11_+_57822347_57822565	0.958168	bHLH_family.p2	NM_028451|Larp1|73158|La ribonucleoprotein domain family, member 1
mm9_v1_chr4_+_148478238_148478288	0.956499	bHLH_family.p2	AK039227|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_001025296|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_010044|Dffa|13347|DNA fragmentation factor, alpha subunit	AK154488|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr15_-_66663390_66663390	0.953513	bHLH_family.p2	AK036167|Sla|20491|src-like adaptor	NM_001029841|Sla|20491|src-like adaptor
mm9_v1_chr11_-_90252228_90252237	0.952665	bHLH_family.p2	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr18_+_5591869_5591894	0.950089	bHLH_family.p2	AK014114|Zeb1|21417|zinc finger E-box binding homeobox 1	U26259|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139768|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139769|Zeb1|21417|zinc finger E-box binding homeobox 1	D76432|Zeb1|21417|zinc finger E-box binding homeobox 1	NM_011546|Zeb1|21417|zinc finger E-box binding homeobox 1	BC090987|Zeb1|21417|zinc finger E-box binding homeobox 1	AK135371|Zeb1|21417|zinc finger E-box binding homeobox 1
mm9_v1_chr15_+_54402988_54403054	0.949602	bHLH_family.p2	AK035986|Mal2|105853|mal, T-cell differentiation protein 2	BC113154|Mal2|105853|mal, T-cell differentiation protein 2
mm9_v1_chr2_+_156601150_156601169	0.947082	bHLH_family.p2	AK159880|Myl9|98932|myosin, light polypeptide 9, regulatory	BC049974|Myl9|98932|myosin, light polypeptide 9, regulatory
mm9_v1_chr10_-_39862004_39862094	0.946783	bHLH_family.p2	AK151636|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK036743|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK144135|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151290|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151704|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK157355|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165240|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165579|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_001114332|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_028247|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK050229|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK011813|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm9_v1_chr15_+_3220999_3221005	0.946147	bHLH_family.p2	AK168463|Sepp1|20363|selenoprotein P, plasma, 1	BC001991|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr9_-_13631482_13631562	0.94498	bHLH_family.p2	BC056968|Cep57|74360|centrosomal protein 57	AY251192|Cep57|74360|centrosomal protein 57	AK014873|Cep57|74360|centrosomal protein 57	BC030353|Cep57|74360|centrosomal protein 57	AK129053|Cep57|74360|centrosomal protein 57	NM_026665|Cep57|74360|centrosomal protein 57
mm9_v1_chr11_-_76031013_76031165	0.942364	bHLH_family.p2	BC031425|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK028076|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK165864|Gemin4|276919|gem (nuclear organelle) associated protein 4	BC062157|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK141078|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK154061|Gemin4|276919|gem (nuclear organelle) associated protein 4	NM_177367|Gemin4|276919|gem (nuclear organelle) associated protein 4	AK133821|Gemin4|276919|gem (nuclear organelle) associated protein 4
mm9_v1_chr15_-_96529121_96529237	0.94207	bHLH_family.p2	AK164568|Slc38a2|67760|solute carrier family 38, member 2	AK018767|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr6_-_52176102_52176188	0.941757	bHLH_family.p2	AB221551|Hoxa9|15405|homeobox A9	BC055059|Hoxa9|15405|homeobox A9
mm9_v1_chr9_+_58430210_58430222	0.941628	bHLH_family.p2	AK075610|Nptn|20320|neuroplastin	AK153930|Nptn|20320|neuroplastin	D50463|Nptn|20320|neuroplastin
mm9_v1_chr2_-_117168600_117168658	0.941347	bHLH_family.p2	BC057120|Rasgrp1|19419|RAS guanyl releasing protein 1	BC057341|Rasgrp1|19419|RAS guanyl releasing protein 1	NM_011246|Rasgrp1|19419|RAS guanyl releasing protein 1	AK134005|Rasgrp1|19419|RAS guanyl releasing protein 1	AK013548|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr7_-_106331080_106331233	0.938094	bHLH_family.p2	AF384160|Dgat2|67800|diacylglycerol O-acyltransferase 2	AK016660|Dgat2|67800|diacylglycerol O-acyltransferase 2	BC043447|Dgat2|67800|diacylglycerol O-acyltransferase 2	NM_026384|Dgat2|67800|diacylglycerol O-acyltransferase 2	AK002443|Dgat2|67800|diacylglycerol O-acyltransferase 2
mm9_v1_chr1_-_122161827_122161860	0.93319	bHLH_family.p2	AK003108|Steap3|68428|STEAP family member 3	AK028961|Steap3|68428|STEAP family member 3	AY029586|Steap3|68428|STEAP family member 3	BC027251|Steap3|68428|STEAP family member 3	BC037435|Steap3|68428|STEAP family member 3	NM_133186|Steap3|68428|STEAP family member 3	AK171237|Steap3|68428|STEAP family member 3
mm9_v1_chr11_+_43342241_43342329	0.932832	bHLH_family.p2	AK143205|Ccnjl|380694|cyclin J-like	NM_001045530|Ccnjl|380694|cyclin J-like
mm9_v1_chr6_-_94650118_94650173	0.932227	bHLH_family.p2	D78572|Lrig1|16206|leucine-rich repeats and immunoglobulin-like domains 1	NM_008377|Lrig1|16206|leucine-rich repeats and immunoglobulin-like domains 1
mm9_v1_chr4_-_149148173_149148404	0.932142	bHLH_family.p2	AK017628|Slc25a33|70556|solute carrier family 25, member 33	BC011293|Slc25a33|70556|solute carrier family 25, member 33	AK157423|Slc25a33|70556|solute carrier family 25, member 33	NM_027460|Slc25a33|70556|solute carrier family 25, member 33
mm9_v1_chr19_+_5601857_5601905	0.93001	bHLH_family.p2	NM_026616|Rnaseh2c|68209|ribonuclease H2, subunit C	AF346604|Rnaseh2c|68209|ribonuclease H2, subunit C	AK018776|Rnaseh2c|68209|ribonuclease H2, subunit C	AK011556|Rnaseh2c|68209|ribonuclease H2, subunit C	BC024333|Rnaseh2c|68209|ribonuclease H2, subunit C
mm9_v1_chr13_-_58375469_58375564	0.928038	bHLH_family.p2	BC052347|Gkap1|56278|G kinase anchoring protein 1	NM_019832|Gkap1|56278|G kinase anchoring protein 1
mm9_v1_chr6_+_17643923_17644228	0.926852	bHLH_family.p2	BC024652|St7|64213|suppression of tumorigenicity 7	AY007792|St7|64213|suppression of tumorigenicity 7	AY007793|St7|64213|suppression of tumorigenicity 7
mm9_v1_chr2_+_102498839_102498845	0.922277	bHLH_family.p2	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr5_-_100929644_100929677	0.922137	bHLH_family.p2	AK220225|Lin54|231506|lin-54 homolog (C. elegans)	AK134320|Lin54|231506|lin-54 homolog (C. elegans)	AK029288|Lin54|231506|lin-54 homolog (C. elegans)	NM_172714|Lin54|231506|lin-54 homolog (C. elegans)
mm9_v1_chrX_+_93291377_93291457	0.91985	bHLH_family.p2	AK133819|Msn|17698|moesin	AK145746|Msn|17698|moesin	AK150869|Msn|17698|moesin	AK153210|Msn|17698|moesin	NM_010833|Msn|17698|moesin	AK031171|Msn|17698|moesin	S47577|Msn|17698|moesin	BC047366|Msn|17698|moesin	AK157701|Msn|17698|moesin	AK087001|Msn|17698|moesin	AK088336|Msn|17698|moesin
mm9_v1_chr19_+_21727795_21727859	0.918667	bHLH_family.p2	NM_146096|Fam108b|226016|family with sequence similarity 108, member B	AK017641|Fam108b|226016|family with sequence similarity 108, member B
mm9_v1_chr16_-_31201234_31201250	0.918562	bHLH_family.p2	AK029343|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK147319|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chr8_+_14911653_14911743	0.917285	bHLH_family.p2	AK147669|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK051721|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_001037736|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_172751|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK054038|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK220332|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	BC066074|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10
mm9_v1_chr9_+_43875175_43875249	0.915873	bHLH_family.p2	AY255638|Usp2|53376|ubiquitin specific peptidase 2	AY255639|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr5_+_20930720_20930881	0.914726	bHLH_family.p2	NM_177869|Fam185a|330050|family with sequence similarity 185, member A	AK030922|Fam185a|330050|family with sequence similarity 185, member A	AK076256|Fam185a|330050|family with sequence similarity 185, member A	BC055342|Fam185a|330050|family with sequence similarity 185, member A
mm9_v1_chr10_-_8605668_8605870	0.913923	bHLH_family.p2	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr16_+_45158927_45158941	0.910362	bHLH_family.p2	AK005266|Atg3|67841|autophagy-related 3 (yeast)	AK011409|Atg3|67841|autophagy-related 3 (yeast)	AK150914|Atg3|67841|autophagy-related 3 (yeast)	AK159231|Atg3|67841|autophagy-related 3 (yeast)	NM_026402|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr15_-_99602827_99602945	0.908089	bHLH_family.p2	AK146417|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145589|Lass5|71949|LAG1 homolog, ceramide synthase 5	AY029533|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK075694|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK146220|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145762|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK010241|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC043059|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC046797|Lass5|71949|LAG1 homolog, ceramide synthase 5	NM_028015|Lass5|71949|LAG1 homolog, ceramide synthase 5
mm9_v1_chr9_-_48288557_48288687	0.90669	bHLH_family.p2	AK178028|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK209299|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK212689|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK171619|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK150287|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	BC003445|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr3_+_135488454_135488592	0.904808	bHLH_family.p2	AK028215|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_026228|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	AK016853|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr5_+_112705715_112705772	0.904635	bHLH_family.p2	AK149379|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK036436|Tpst2|22022|protein-tyrosine sulfotransferase 2	NM_009419|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK075672|Tpst2|22022|protein-tyrosine sulfotransferase 2	BC003721|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK163461|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK149502|Tpst2|22022|protein-tyrosine sulfotransferase 2	AK150082|Tpst2|22022|protein-tyrosine sulfotransferase 2
mm9_v1_chr8_+_89996742_89996746	0.904348	bHLH_family.p2	AK144513|Gm2694|100040294|predicted gene 2694
mm9_v1_chr15_-_88971039_88971132	0.903091	bHLH_family.p2	BC021640|Mapk12|29857|mitogen-activated protein kinase 12	Y13439|Mapk12|29857|mitogen-activated protein kinase 12	AK011286|Mapk12|29857|mitogen-activated protein kinase 12	AK165741|Mapk12|29857|mitogen-activated protein kinase 12	NM_013871|Mapk12|29857|mitogen-activated protein kinase 12
mm9_v1_chr1_-_122017495_122017589	0.90171	bHLH_family.p2	AM000002|Dbi|13167|diazepam binding inhibitor	NM_001037999|Dbi|13167|diazepam binding inhibitor	BC028874|Dbi|13167|diazepam binding inhibitor	EF437365|Dbi|13167|diazepam binding inhibitor
mm9_v1_chr5_+_135644171_135644241	0.900251	bHLH_family.p2	NM_009745|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr5_+_138187182_138187260	0.898267	bHLH_family.p2	AK080828|Tsc22d4|78829|TSC22 domain family, member 4	AK155712|Tsc22d4|78829|TSC22 domain family, member 4	AK170487|Tsc22d4|78829|TSC22 domain family, member 4	AK018735|Tsc22d4|78829|TSC22 domain family, member 4	NM_023910|Tsc22d4|78829|TSC22 domain family, member 4	AK150043|Tsc22d4|78829|TSC22 domain family, member 4	BC145721|Tsc22d4|78829|TSC22 domain family, member 4	BC145723|Tsc22d4|78829|TSC22 domain family, member 4	AK039535|Tsc22d4|78829|TSC22 domain family, member 4	AK154153|Tsc22d4|78829|TSC22 domain family, member 4	AK040534|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr16_-_11254052_11254466	0.898123	bHLH_family.p2	BC031640|Gspt1|14852|G1 to S phase transition 1	AK030760|Gspt1|14852|G1 to S phase transition 1	AK032059|Gspt1|14852|G1 to S phase transition 1	AK148603|Gspt1|14852|G1 to S phase transition 1	AK134128|Gspt1|14852|G1 to S phase transition 1	AK037929|Gspt1|14852|G1 to S phase transition 1	AK166626|Gspt1|14852|G1 to S phase transition 1	NM_001130008|Gspt1|14852|G1 to S phase transition 1	NM_146066|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr7_+_133839443_133839523	0.896883	bHLH_family.p2	BC061197|Bola2|66162|bolA-like 2 (E. coli)	BC045523|Bola2|66162|bolA-like 2 (E. coli)	AK028165|Bola2|66162|bolA-like 2 (E. coli)	AK002662|Bola2|66162|bolA-like 2 (E. coli)	AK003922|Bola2|66162|bolA-like 2 (E. coli)	NM_175103|Bola2|66162|bolA-like 2 (E. coli)	AK140279|Bola2|66162|bolA-like 2 (E. coli)
mm9_v1_chr7_+_51723361_51723439	0.896081	bHLH_family.p2	AK003525|Josd2|66124|Josephin domain containing 2	NM_025368|Josd2|66124|Josephin domain containing 2
mm9_v1_chr15_+_84511408_84511471	0.894847	bHLH_family.p2	NM_146061|Prr5|109270|proline rich 5 (renal)	AF482997|Prr5|109270|proline rich 5 (renal)	AK081231|Prr5|109270|proline rich 5 (renal)
mm9_v1_chr7_-_4741145_4741257	0.89343	bHLH_family.p2	AK008900|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	NM_029384|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	BC132101|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	BC144965|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene
mm9_v1_chr4_+_132686434_132686575	0.8932	bHLH_family.p2	AK150140|Wasf2|242687|WAS protein family, member 2	BC051488|Wasf2|242687|WAS protein family, member 2	AK172187|Wasf2|242687|WAS protein family, member 2	AK085458|Wasf2|242687|WAS protein family, member 2	NM_153423|Wasf2|242687|WAS protein family, member 2
mm9_v1_chr6_-_87931475_87931614	0.887693	bHLH_family.p2	BC048709|H1fx|243529|H1 histone family, member X	NM_198622|H1fx|243529|H1 histone family, member X
mm9_v1_chr10_+_57206509_57206656	0.887451	bHLH_family.p2	
mm9_v1_chr4_-_133523750_133523927	0.886899	bHLH_family.p2	X12944|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC084680|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090837|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC092060|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC083085|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090836|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC103792|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK078413|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK002374|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK151383|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK152857|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK153881|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK169050|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146285|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146999|Hmgn2|15331|high mobility group nucleosomal binding domain 2	NM_016957|Hmgn2|15331|high mobility group nucleosomal binding domain 2
mm9_v1_chr12_+_113826975_113827051	0.886666	bHLH_family.p2	DQ834374|Inf2|70435|inverted formin, FH2 and WH2 domain containing	NM_198411|Inf2|70435|inverted formin, FH2 and WH2 domain containing
mm9_v1_chr1_-_155396839_155396845	0.886614	bHLH_family.p2	BC022734|Npl|74091|N-acetylneuraminate pyruvate lyase	AK154216|F630010C12Rik|100038670|RIKEN cDNA F630010C12 gene	AK002734|Npl|74091|N-acetylneuraminate pyruvate lyase	NM_028749|Npl|74091|N-acetylneuraminate pyruvate lyase	AK088859|Npl|74091|N-acetylneuraminate pyruvate lyase
mm9_v1_chr7_-_135020290_135020344	0.88566	bHLH_family.p2	BC028251|Zfp668|244219|zinc finger protein 668	AK047593|Zfp668|244219|zinc finger protein 668	AK081436|Zfp668|244219|zinc finger protein 668	AK053438|Zfp668|244219|zinc finger protein 668	NM_146259|Zfp668|244219|zinc finger protein 668	AK169556|Zfp668|244219|zinc finger protein 668
mm9_v1_chr8_+_3500470_3500545	0.885576	bHLH_family.p2	AK032531|Mcoln1|94178|mucolipin 1	AK038594|Mcoln1|94178|mucolipin 1	AK034471|Mcoln1|94178|mucolipin 1	AK049606|Mcoln1|94178|mucolipin 1	BC005651|Mcoln1|94178|mucolipin 1	NM_053177|Mcoln1|94178|mucolipin 1	AF302009|Mcoln1|94178|mucolipin 1	AK028385|Mcoln1|94178|mucolipin 1
mm9_v1_chr11_-_69734709_69734796	0.884651	bHLH_family.p2	AK178863|Eif5a|276770|eukaryotic translation initiation factor 5A	AK188886|Eif5a|276770|eukaryotic translation initiation factor 5A	BC008093|Eif5a|276770|eukaryotic translation initiation factor 5A	BC003889|Eif5a|276770|eukaryotic translation initiation factor 5A	BC024899|Eif5a|276770|eukaryotic translation initiation factor 5A	AK011470|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166595|Eif5a|276770|eukaryotic translation initiation factor 5A	AK010183|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr11_-_90548862_90548939	0.880745	bHLH_family.p2	AK181527|Tom1l1|71943|target of myb1-like 1 (chicken)	AJ505007|Tom1l1|71943|target of myb1-like 1 (chicken)	AK009826|Tom1l1|71943|target of myb1-like 1 (chicken)	AK083630|Tom1l1|71943|target of myb1-like 1 (chicken)	AF395837|Tom1l1|71943|target of myb1-like 1 (chicken)	AK033712|Tom1l1|71943|target of myb1-like 1 (chicken)	NM_028011|Tom1l1|71943|target of myb1-like 1 (chicken)
mm9_v1_chr14_-_31832165_31832254	0.880693	bHLH_family.p2	BC037996|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AY181025|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AY185498|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AK087757|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AK167183|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	BC018560|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)	AK077523|Gnl3|30877|guanine nucleotide binding protein-like 3 (nucleolar)
mm9_v1_chr11_+_102622885_102622911	0.878688	bHLH_family.p2	BC054536|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr3_+_52072302_52072340	0.877255	bHLH_family.p2	AK137629|Foxo1|56458|forkhead box O1	AF114258|Foxo1|56458|forkhead box O1
mm9_v1_chr14_+_70857227_70857399	0.874789	bHLH_family.p2	AK049900|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	NM_145981|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC030494|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC139360|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein
mm9_v1_chr4_+_132091462_132091502	0.872845	bHLH_family.p2	AK088325|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	NM_172400|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	BC137735|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	BC145655|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	AK049526|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	AK150933|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	AK003892|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	AK168645|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	BC064732|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	BC066222|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	BC080760|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8	BC057191|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8
mm9_v1_chr19_-_31738841_31738908	0.872624	bHLH_family.p2	BC113162|Prkg1|19091|protein kinase, cGMP-dependent, type I	AF084547|Prkg1|19091|protein kinase, cGMP-dependent, type I	NM_011160|Prkg1|19091|protein kinase, cGMP-dependent, type I
mm9_v1_chr9_-_114842932_114842948	0.871703	bHLH_family.p2	BC138976|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	BC138980|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK075845|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr10_+_121176978_121177017	0.871304	bHLH_family.p2	BC065058|BC048403|270802|cDNA sequence BC048403	NM_173022|BC048403|270802|cDNA sequence BC048403	AK166238|BC048403|270802|cDNA sequence BC048403	AK138662|BC048403|270802|cDNA sequence BC048403	AK162911|BC048403|270802|cDNA sequence BC048403	AK087110|BC048403|270802|cDNA sequence BC048403	AK169891|BC048403|270802|cDNA sequence BC048403
mm9_v1_chr13_+_37917906_37917945	0.868155	bHLH_family.p2	NM_026830|Rreb1|68750|ras responsive element binding protein 1	AK154980|Rreb1|68750|ras responsive element binding protein 1
mm9_v1_chr7_+_26052714_26052731	0.865033	bHLH_family.p2	AK147535|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr19_-_6532339_6532383	0.864921	bHLH_family.p2	AK045662|Gm14964|100008567|predicted gene 14964
mm9_v1_chr4_-_148800458_148800500	0.864887	bHLH_family.p2	BC067402|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr7_+_3303770_3303847	0.861819	bHLH_family.p2	BC111807|Prkcc|18752|protein kinase C, gamma	X67129|Prkcc|18752|protein kinase C, gamma
mm9_v1_chr7_-_134852110_134852201	0.860486	bHLH_family.p2	Y11905|Bcl7c|12055|B-cell CLL/lymphoma 7C	BC058530|Bcl7c|12055|B-cell CLL/lymphoma 7C	AK131935|Bcl7c|12055|B-cell CLL/lymphoma 7C
mm9_v1_chr19_+_8692485_8692668	0.859758	bHLH_family.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr11_+_43287798_43287813	0.85853	bHLH_family.p2	AK007683|C1qtnf2|69183|C1q and tumor necrosis factor related protein 2
mm9_v1_chr3_-_58495986_58496041	0.855165	bHLH_family.p2	Z19581|Siah2|20439|seven in absentia 2
mm9_v1_chr3_-_126865259_126865312	0.854281	bHLH_family.p2	AK083111|Ank2|109676|ankyrin 2, brain
mm9_v1_chr7_+_89003886_89004046	0.853621	bHLH_family.p2	AK083132|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK135100|Tm6sf1|107769|transmembrane 6 superfamily member 1	NM_145375|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK163621|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK172109|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK046714|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK172145|Tm6sf1|107769|transmembrane 6 superfamily member 1	BC023123|Tm6sf1|107769|transmembrane 6 superfamily member 1	AK162572|Tm6sf1|107769|transmembrane 6 superfamily member 1
mm9_v1_chr10_+_79317409_79317433	0.851057	bHLH_family.p2	AK033319|Ptbp1|19205|polypyrimidine tract binding protein 1	AK041143|Ptbp1|19205|polypyrimidine tract binding protein 1	AK051669|Ptbp1|19205|polypyrimidine tract binding protein 1	AK088126|Ptbp1|19205|polypyrimidine tract binding protein 1	AK036745|Ptbp1|19205|polypyrimidine tract binding protein 1	AK050498|Ptbp1|19205|polypyrimidine tract binding protein 1	AK053926|Ptbp1|19205|polypyrimidine tract binding protein 1	AK088483|Ptbp1|19205|polypyrimidine tract binding protein 1	AK149941|Ptbp1|19205|polypyrimidine tract binding protein 1	AK168359|Ptbp1|19205|polypyrimidine tract binding protein 1	BC028848|Ptbp1|19205|polypyrimidine tract binding protein 1	X52101|Ptbp1|19205|polypyrimidine tract binding protein 1	BC086489|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr16_-_5204078_5204121	0.849955	bHLH_family.p2	AK155450|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK159629|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK169539|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK170219|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK162633|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	BC039790|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK168830|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK138035|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK032158|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	AK087468|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	NM_013796|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
mm9_v1_chr19_-_24299389_24299452	0.846785	bHLH_family.p2	AK028494|Tjp2|21873|tight junction protein 2
mm9_v1_chr3_-_116510948_116511083	0.843901	bHLH_family.p2	AK087855|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK041661|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK036225|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	NM_001081326|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm9_v1_chr14_-_123312303_123312411	0.841613	bHLH_family.p2	BC080839|A2ld1|223267|AIG2-like domain 1	BC006662|A2ld1|223267|AIG2-like domain 1	AK050251|A2ld1|223267|AIG2-like domain 1	NM_145466|A2ld1|223267|AIG2-like domain 1
mm9_v1_chr3_-_130974850_130975000	0.838475	bHLH_family.p2	BC028833|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK148481|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK075609|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK167024|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK168877|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	D29639|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK148486|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	NM_008212|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	BC064712|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK168238|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK132260|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase	AK169261|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase
mm9_v1_chr17_-_25933989_25933999	0.838075	bHLH_family.p2	AK087402|Metrn|70083|meteorin, glial cell differentiation regulator	NM_133719|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr12_+_80130149_80130201	0.836801	bHLH_family.p2	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr1_+_59741800_59741942	0.836171	bHLH_family.p2	BC076604|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AK134286|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	NM_018868|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AK133959|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AK044216|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	BC085135|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)	AF053232|Nop58|55989|NOP58 ribonucleoprotein homolog (yeast)
mm9_v1_chr9_+_45820886_45820906	0.835161	bHLH_family.p2	NM_027498|Sik3|70661|SIK family kinase 3
mm9_v1_chrX_+_10294707_10294726	0.835002	bHLH_family.p2	AK131619|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK014143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr3_+_94758056_94758147	0.834327	bHLH_family.p2	BC051965|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)	BC075717|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)	AK088686|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)	BC057336|Rfx5|53970|regulatory factor X, 5 (influences HLA class II expression)
mm9_v1_chr5_+_91946651_91946764	0.834209	bHLH_family.p2	AK148300|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078943|Parm1|231440|prostate androgen-regulated mucin-like protein 1	BC006604|Parm1|231440|prostate androgen-regulated mucin-like protein 1	NM_145562|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK167402|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK161172|Parm1|231440|prostate androgen-regulated mucin-like protein 1	AK078862|Parm1|231440|prostate androgen-regulated mucin-like protein 1
mm9_v1_chr13_+_93614714_93614741	0.832743	bHLH_family.p2	AK090249|Mtx3|382793|metaxin 3	NM_001162945|Mtx3|382793|metaxin 3
mm9_v1_chr14_+_122874625_122874656	0.830079	bHLH_family.p2	D70848|Zic2|22772|zinc finger protein of the cerebellum 2
mm9_v1_chr5_-_24348240_24348246	0.828914	bHLH_family.p2	AK158213|Rheb|19744|Ras homolog enriched in brain
mm9_v1_chr9_-_114842996_114843065	0.828426	bHLH_family.p2	AK050572|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK172886|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr4_+_137220675_137220705	0.826641	bHLH_family.p2	AK172955|Rap1gap|110351|Rap1 GTPase-activating protein
mm9_v1_chr4_-_134323845_134323948	0.818162	bHLH_family.p2	BC021467|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK159800|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC066808|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC067411|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK167290|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK029008|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK148340|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	NM_145554|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1
mm9_v1_chr5_-_77524050_77524182	0.817344	bHLH_family.p2	AF536202|Hopx|74318|HOP homeobox
mm9_v1_chr15_+_100446018_100446129	0.815067	bHLH_family.p2	AK002595|Dazap2|23994|DAZ associated protein 2	AK145398|Dazap2|23994|DAZ associated protein 2	AK146970|Dazap2|23994|DAZ associated protein 2	L10906|Dazap2|23994|DAZ associated protein 2	AK088916|Dazap2|23994|DAZ associated protein 2	AK132139|Dazap2|23994|DAZ associated protein 2	AK137246|Dazap2|23994|DAZ associated protein 2	BC014808|Dazap2|23994|DAZ associated protein 2	NM_011873|Dazap2|23994|DAZ associated protein 2	BC083347|Dazap2|23994|DAZ associated protein 2	AF085348|Dazap2|23994|DAZ associated protein 2
mm9_v1_chr5_+_75471625_75471626	0.814781	bHLH_family.p2	NM_133256|Gsx2|14843|GS homeobox 2	S79041|Gsx2|14843|GS homeobox 2	BC119464|Gsx2|14843|GS homeobox 2	BC119465|Gsx2|14843|GS homeobox 2
mm9_v1_chr9_-_114690887_114691007	0.814756	bHLH_family.p2	AK151785|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AF188504|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168280|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	NM_133978|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC038633|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK167886|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC026773|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168024|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AY241869|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK040123|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7
mm9_v1_chr2_-_25316553_25316613	0.814455	bHLH_family.p2	BC029214|BC029214|227622|cDNA sequence BC029214	NM_153557|BC029214|227622|cDNA sequence BC029214
mm9_v1_chr6_-_22306070_22306242	0.813936	bHLH_family.p2	AY424275|Fam3c|27999|family with sequence similarity 3, member C	BC009086|Fam3c|27999|family with sequence similarity 3, member C	NM_138587|Fam3c|27999|family with sequence similarity 3, member C	BC055853|Fam3c|27999|family with sequence similarity 3, member C	AK154498|Fam3c|27999|family with sequence similarity 3, member C	AK170887|Fam3c|27999|family with sequence similarity 3, member C	BC069880|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr3_+_89050340_89050434	0.813559	bHLH_family.p2	AK002479|Krtcap2|66059|keratinocyte associated protein 2	NM_025327|Krtcap2|66059|keratinocyte associated protein 2	AK003310|Krtcap2|66059|keratinocyte associated protein 2	BC031492|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr14_-_68333427_68333447	0.812833	bHLH_family.p2	AK160223|Cdca2|108912|cell division cycle associated 2	AK031083|Cdca2|108912|cell division cycle associated 2	AK166952|Cdca2|108912|cell division cycle associated 2	BC037136|Cdca2|108912|cell division cycle associated 2
mm9_v1_chr11_-_84632935_84633016	0.8063	bHLH_family.p2	AK156416|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	AK041034|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	AK164059|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	AK163986|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	BC005625|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)	NM_145433|Mrm1|217038|mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr6_-_59376283_59376287	0.806223	bHLH_family.p2	AK050148|Gprin3|243385|GPRIN family member 3	NM_183183|Gprin3|243385|GPRIN family member 3	AK173336|Gprin3|243385|GPRIN family member 3
mm9_v1_chr16_-_20716198_20716246	0.805826	bHLH_family.p2	AK165000|Clcn2|12724|chloride channel 2
mm9_v1_chr15_-_77787128_77787170	0.803941	bHLH_family.p2	NM_001017983|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2	NM_001168260|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2
mm9_v1_chr3_-_108525060_108525104	0.803825	bHLH_family.p2	AY081187|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)	AK040996|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)
mm9_v1_chrX_+_99044723_99044723	0.802173	bHLH_family.p2	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr18_-_62339609_62339644	0.799895	bHLH_family.p2	BC032883|Adrb2|11555|adrenergic receptor, beta 2	NM_007420|Adrb2|11555|adrenergic receptor, beta 2	AK080241|Adrb2|11555|adrenergic receptor, beta 2	AK080276|Adrb2|11555|adrenergic receptor, beta 2
mm9_v1_chr6_-_146582942_146583021	0.798689	bHLH_family.p2	AK204708|Tm7sf3|67623|transmembrane 7 superfamily member 3	AK010720|Tm7sf3|67623|transmembrane 7 superfamily member 3	BC049960|Tm7sf3|67623|transmembrane 7 superfamily member 3
mm9_v1_chr14_-_69903072_69903169	0.798651	bHLH_family.p2	AF288621|Slc25a37|67712|solute carrier family 25, member 37	AF361699|Slc25a37|67712|solute carrier family 25, member 37	AK050414|Slc25a37|67712|solute carrier family 25, member 37	NM_026331|Slc25a37|67712|solute carrier family 25, member 37	AK006155|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr8_+_109127245_109127278	0.798584	bHLH_family.p2	AK076369|Cdh1|12550|cadherin 1	AK166267|Cdh1|12550|cadherin 1	NM_009864|Cdh1|12550|cadherin 1	BC098501|Cdh1|12550|cadherin 1
mm9_v1_chr8_+_120022149_120022210	0.798254	bHLH_family.p2	AK142173|Plcg2|234779|phospholipase C, gamma 2	AK170430|Plcg2|234779|phospholipase C, gamma 2	BC023877|Plcg2|234779|phospholipase C, gamma 2	NM_172285|Plcg2|234779|phospholipase C, gamma 2	AK151039|Plcg2|234779|phospholipase C, gamma 2
mm9_v1_chr13_-_12432984_12433003	0.797996	bHLH_family.p2	AY036877|Actn2|11472|actinin alpha 2	AK047768|Actn2|11472|actinin alpha 2	BC089579|Actn2|11472|actinin alpha 2	NM_033268|Actn2|11472|actinin alpha 2
mm9_v1_chr9_-_44150387_44150463	0.797588	bHLH_family.p2	AK028234|Hmbs|15288|hydroxymethylbilane synthase	AK143558|Hmbs|15288|hydroxymethylbilane synthase	AK158160|Hmbs|15288|hydroxymethylbilane synthase	NM_001110251|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr14_-_68333397_68333419	0.797528	bHLH_family.p2	BC067009|Cdca2|108912|cell division cycle associated 2
mm9_v1_chr15_+_100058249_100058291	0.795795	bHLH_family.p2	AK144511|Atf1|11908|activating transcription factor 1	NM_007497|Atf1|11908|activating transcription factor 1
mm9_v1_chr3_-_107135939_107136206	0.794839	bHLH_family.p2	BC080828|Rbm15|229700|RNA binding motif protein 15	AK048987|Rbm15|229700|RNA binding motif protein 15	BC051409|Rbm15|229700|RNA binding motif protein 15	AK168242|Rbm15|229700|RNA binding motif protein 15	AK166271|Rbm15|229700|RNA binding motif protein 15	BC057038|Rbm15|229700|RNA binding motif protein 15	AK220162|Rbm15|229700|RNA binding motif protein 15	AK168936|Rbm15|229700|RNA binding motif protein 15	BC120590|Rbm15|229700|RNA binding motif protein 15	BC137741|Rbm15|229700|RNA binding motif protein 15	NM_001045807|Rbm15|229700|RNA binding motif protein 15
mm9_v1_chr4_-_123089122_123089187	0.794763	bHLH_family.p2	AK085936|D830031N03Rik|442834|RIKEN cDNA D830031N03 gene	NM_001167918|D830031N03Rik|442834|RIKEN cDNA D830031N03 gene
mm9_v1_chr6_-_124915545_124915560	0.794019	bHLH_family.p2	NM_001164089|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr13_-_64471609_64471618	0.793329	bHLH_family.p2	AK011589|Ctsl|13039|cathepsin L	AK147142|Ctsl|13039|cathepsin L	AK002221|Ctsl|13039|cathepsin L	AK049466|Ctsl|13039|cathepsin L	AK145051|Ctsl|13039|cathepsin L	AK150452|Ctsl|13039|cathepsin L	AK151169|Ctsl|13039|cathepsin L	AK153076|Ctsl|13039|cathepsin L	AK153417|Ctsl|13039|cathepsin L	AK159511|Ctsl|13039|cathepsin L	AK160100|Ctsl|13039|cathepsin L	AK161538|Ctsl|13039|cathepsin L	AK165397|Ctsl|13039|cathepsin L	AK169394|Ctsl|13039|cathepsin L	NM_009984|Ctsl|13039|cathepsin L	AK169712|Ctsl|13039|cathepsin L
mm9_v1_chr9_-_20781133_20781171	0.791398	bHLH_family.p2	BC096760|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK159605|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK134275|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK151062|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK153398|S1pr2|14739|sphingosine-1-phosphate receptor 2
mm9_v1_chr16_+_43619057_43619100	0.791358	bHLH_family.p2	AK178854|Zbtb20|56490|zinc finger and BTB domain containing 20	AK013698|Zbtb20|56490|zinc finger and BTB domain containing 20	AK036125|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr15_-_98711692_98711844	0.788419	bHLH_family.p2	AK007708|Rhebl1|69159|Ras homolog enriched in brain like 1	BC016521|Rhebl1|69159|Ras homolog enriched in brain like 1	AK135858|Rhebl1|69159|Ras homolog enriched in brain like 1	AY327413|Rhebl1|69159|Ras homolog enriched in brain like 1	NM_026967|Rhebl1|69159|Ras homolog enriched in brain like 1
mm9_v1_chrX_-_151772899_151773055	0.784669	bHLH_family.p2	AK014651|Prdx4|53381|peroxiredoxin 4	AK029349|Prdx4|53381|peroxiredoxin 4	BC003349|Prdx4|53381|peroxiredoxin 4	AK005031|Prdx4|53381|peroxiredoxin 4	AK015920|Prdx4|53381|peroxiredoxin 4	AK152255|Prdx4|53381|peroxiredoxin 4	AK146402|Prdx4|53381|peroxiredoxin 4	NM_016764|Prdx4|53381|peroxiredoxin 4	U96746|Prdx4|53381|peroxiredoxin 4	BC019578|Prdx4|53381|peroxiredoxin 4	AK157829|Prdx4|53381|peroxiredoxin 4	AK165551|Prdx4|53381|peroxiredoxin 4
mm9_v1_chr5_-_138227888_138227970	0.784283	bHLH_family.p2	AK154415|Mepce|231803|methylphosphate capping enzyme	NM_144913|Mepce|231803|methylphosphate capping enzyme
mm9_v1_chr5_-_37380147_37380223	0.783934	bHLH_family.p2	AJ011971|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AF084482|Wfs1|22393|Wolfram syndrome 1 homolog (human)	BC046988|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK144561|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK170180|Wfs1|22393|Wolfram syndrome 1 homolog (human)	AK145023|Wfs1|22393|Wolfram syndrome 1 homolog (human)	NM_011716|Wfs1|22393|Wolfram syndrome 1 homolog (human)
mm9_v1_chr2_+_121274946_121274963	0.783531	bHLH_family.p2	NM_011354|Serf2|378702|small EDRK-rich factor 2
mm9_v1_chr9_-_79566528_79566565	0.783522	bHLH_family.p2	AK028536|Col12a1|12816|collagen, type XII, alpha 1
mm9_v1_chr6_+_88674821_88674926	0.782824	bHLH_family.p2	AJ316580|Mgll|23945|monoglyceride lipase
mm9_v1_chr13_-_38085986_38086062	0.782477	bHLH_family.p2	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr2_+_18598644_18598801	0.780921	bHLH_family.p2	M64279|Bmi1|12151|Bmi1 polycomb ring finger oncogene	NM_007552|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr11_-_94463099_94463222	0.780134	bHLH_family.p2	BC018371|Acsf2|264895|acyl-CoA synthetase family member 2	NM_153807|Acsf2|264895|acyl-CoA synthetase family member 2	AK034209|Acsf2|264895|acyl-CoA synthetase family member 2	AK169987|Acsf2|264895|acyl-CoA synthetase family member 2	AK153582|Acsf2|264895|acyl-CoA synthetase family member 2	BC063269|Acsf2|264895|acyl-CoA synthetase family member 2
mm9_v1_chr13_-_49063376_49063462	0.77949	bHLH_family.p2	AK172909|Fam120a|218236|family with sequence similarity 120, member A
mm9_v1_chr8_+_119028873_119028914	0.779021	bHLH_family.p2	BC048623|Dynlrb2|75465|dynein light chain roadblock-type 2	AK005789|Dynlrb2|75465|dynein light chain roadblock-type 2	NM_029297|Dynlrb2|75465|dynein light chain roadblock-type 2
mm9_v1_chr7_-_152125521_152125630	0.778508	bHLH_family.p2	AK005352|Ccnd1|12443|cyclin D1
mm9_v1_chr8_+_74659107_74659219	0.778203	bHLH_family.p2	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr7_-_27981077_27981289	0.777853	bHLH_family.p2	L15447|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC096648|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK088550|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC094006|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK049541|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC003229|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK013886|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	NM_015782|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A
mm9_v1_chr9_+_44142772_44142803	0.777671	bHLH_family.p2	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chrX_+_7455387_7455511	0.777358	bHLH_family.p2	AK043570|Pim2|18715|proviral integration site 2	L41495|Pim2|18715|proviral integration site 2	NM_138606|Pim2|18715|proviral integration site 2	BC027376|Pim2|18715|proviral integration site 2
mm9_v1_chr8_-_127187033_127187121	0.775864	bHLH_family.p2	AK084773|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK009458|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK154813|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK170562|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK155222|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr9_-_15162159_15162231	0.774215	bHLH_family.p2	NM_176976|5830418K08Rik|319675|RIKEN cDNA 5830418K08 gene
mm9_v1_chr6_+_116288396_116288456	0.772844	bHLH_family.p2	AK005032|March8|71779|membrane-associated ring finger (C3HC4) 8	AK182250|March8|71779|membrane-associated ring finger (C3HC4) 8	AK189694|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr19_+_10278684_10278739	0.772232	bHLH_family.p2	NM_026919|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK145833|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	AK007351|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene	BC085316|1810006K21Rik|69038|RIKEN cDNA 1810006K21 gene
mm9_v1_chr17_+_23953056_23953186	0.772141	bHLH_family.p2	
mm9_v1_chr4_-_132833622_132833720	0.771596	bHLH_family.p2	BC037609|Tmem222|52174|transmembrane protein 222	AK079189|Tmem222|52174|transmembrane protein 222	AK017503|Tmem222|52174|transmembrane protein 222	AK160188|Tmem222|52174|transmembrane protein 222	NM_025667|Tmem222|52174|transmembrane protein 222
mm9_v1_chr14_+_31528352_31528352	0.770956	bHLH_family.p2	AK160573|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166531|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr5_+_138187303_138187355	0.766467	bHLH_family.p2	BC023761|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr4_-_82151004_82151131	0.763158	bHLH_family.p2	BC062908|Nfib|18028|nuclear factor I/B	AK083167|Nfib|18028|nuclear factor I/B
mm9_v1_chr3_-_89856250_89856452	0.76292	bHLH_family.p2	AK030218|Ubap2l|74383|ubiquitin associated protein 2-like	AK031934|Ubap2l|74383|ubiquitin associated protein 2-like	BC023906|Ubap2l|74383|ubiquitin associated protein 2-like	BC029075|Ubap2l|74383|ubiquitin associated protein 2-like	AK088702|Ubap2l|74383|ubiquitin associated protein 2-like	AF276967|Ubap2l|74383|ubiquitin associated protein 2-like	AK048286|Ubap2l|74383|ubiquitin associated protein 2-like	AK079895|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165983|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165985|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165987|Ubap2l|74383|ubiquitin associated protein 2-like	NM_028475|Ubap2l|74383|ubiquitin associated protein 2-like	NM_153489|Ubap2l|74383|ubiquitin associated protein 2-like	AK014274|Ubap2l|74383|ubiquitin associated protein 2-like	AK152135|Ubap2l|74383|ubiquitin associated protein 2-like	AK040551|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165984|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165986|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165988|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr5_-_120953567_120953653	0.761292	bHLH_family.p2	AK030234|Plbd2|71772|phospholipase B domain containing 2	BC026395|Plbd2|71772|phospholipase B domain containing 2	BC038605|Plbd2|71772|phospholipase B domain containing 2	AF217003|Plbd2|71772|phospholipase B domain containing 2	BC060095|Plbd2|71772|phospholipase B domain containing 2	AK164220|Plbd2|71772|phospholipase B domain containing 2	AK170631|Plbd2|71772|phospholipase B domain containing 2	BC048826|Plbd2|71772|phospholipase B domain containing 2	AK043608|Plbd2|71772|phospholipase B domain containing 2	AK046937|Plbd2|71772|phospholipase B domain containing 2	AK150201|Plbd2|71772|phospholipase B domain containing 2	AK170387|Plbd2|71772|phospholipase B domain containing 2	AK032930|Plbd2|71772|phospholipase B domain containing 2	AK042089|Plbd2|71772|phospholipase B domain containing 2	AK029813|Plbd2|71772|phospholipase B domain containing 2	NM_023625|Plbd2|71772|phospholipase B domain containing 2	AK004973|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr2_+_130100145_130100196	0.759285	bHLH_family.p2	NM_024193|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK009799|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK030730|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK011481|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK011744|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK013528|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK077795|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK139924|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK146243|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK150258|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	AK154024|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)	BC021355|Nop56|67134|NOP56 ribonucleoprotein homolog (yeast)
mm9_v1_chr11_-_58615400_58615517	0.759258	bHLH_family.p2	FJ468008|Fam183b|75429|family with sequence similarity 183, member B	BC094630|Fam183b|75429|family with sequence similarity 183, member B	BC061254|Fam183b|75429|family with sequence similarity 183, member B	BC048748|Fam183b|75429|family with sequence similarity 183, member B	AK157972|Fam183b|75429|family with sequence similarity 183, member B	AK013920|Fam183b|75429|family with sequence similarity 183, member B	NM_001162878|Fam183b|75429|family with sequence similarity 183, member B	NM_029283|Fam183b|75429|family with sequence similarity 183, member B	BC126964|Fam183b|75429|family with sequence similarity 183, member B	BC117741|Fam183b|75429|family with sequence similarity 183, member B
mm9_v1_chr11_+_120534337_120534436	0.758847	bHLH_family.p2	BC022115|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	BC019177|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	BC031153|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	AY349133|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)	AK088197|Aspscr1|68938|alveolar soft part sarcoma chromosome region, candidate 1 (human)
mm9_v1_chr19_+_23215725_23215754	0.757936	bHLH_family.p2	BC106117|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr14_+_35123922_35124003	0.756412	bHLH_family.p2	BC052724|Glud1|14661|glutamate dehydrogenase 1	BC057347|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr11_-_7113899_7113931	0.754712	bHLH_family.p2	BC031421|Igfbp3|16009|insulin-like growth factor binding protein 3	BC058261|Igfbp3|16009|insulin-like growth factor binding protein 3	NM_008343|Igfbp3|16009|insulin-like growth factor binding protein 3
mm9_v1_chr9_-_61762220_61762398	0.753985	bHLH_family.p2	BC013252|Rplp1|56040|ribosomal protein, large, P1	BC092536|Rplp1|56040|ribosomal protein, large, P1	NM_018853|Rplp1|56040|ribosomal protein, large, P1	BC092088|Rplp1|56040|ribosomal protein, large, P1	BC091747|Rplp1|56040|ribosomal protein, large, P1	BC058685|Rplp1|56040|ribosomal protein, large, P1	U29402|Rplp1|56040|ribosomal protein, large, P1	AK007832|Rplp1|56040|ribosomal protein, large, P1	AK088070|Rplp1|56040|ribosomal protein, large, P1	AK169347|Rplp1|56040|ribosomal protein, large, P1	AK010656|Rplp1|56040|ribosomal protein, large, P1
mm9_v1_chr2_+_164793796_164793824	0.750166	bHLH_family.p2	AF332063|Slc12a5|57138|solute carrier family 12, member 5	AF332064|Slc12a5|57138|solute carrier family 12, member 5	BC054808|Slc12a5|57138|solute carrier family 12, member 5
mm9_v1_chr4_+_19935558_19935623	0.747072	bHLH_family.p2	AK050374|Ttpa|50500|tocopherol (alpha) transfer protein	BC099869|Ttpa|50500|tocopherol (alpha) transfer protein	BC099870|Ttpa|50500|tocopherol (alpha) transfer protein	BC099871|Ttpa|50500|tocopherol (alpha) transfer protein	NM_015767|Ttpa|50500|tocopherol (alpha) transfer protein	BC099868|Ttpa|50500|tocopherol (alpha) transfer protein	AF218416|Ttpa|50500|tocopherol (alpha) transfer protein	AK004882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr15_-_102087673_102087947	0.747065	bHLH_family.p2	M34476|Rarg|19411|retinoic acid receptor, gamma	X15848|Rarg|19411|retinoic acid receptor, gamma	M32068|Rarg|19411|retinoic acid receptor, gamma	BC012923|Rarg|19411|retinoic acid receptor, gamma	NM_011244|Rarg|19411|retinoic acid receptor, gamma	AK148064|Rarg|19411|retinoic acid receptor, gamma
mm9_v1_chr3_-_108013364_108013419	0.746394	bHLH_family.p2	BC094547|Atxn7l2|72522|ataxin 7-like 2
mm9_v1_chr13_-_56397521_56397792	0.746091	bHLH_family.p2	AF352784|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AF352785|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	BC147274|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	BC147275|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AF152377|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	BC079661|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AK014351|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AF144754|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AK155356|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AK076112|Cxcl14|57266|chemokine (C-X-C motif) ligand 14	AK004615|Cxcl14|57266|chemokine (C-X-C motif) ligand 14
mm9_v1_chr10_+_59165307_59165416	0.745328	bHLH_family.p2	AK083520|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK049521|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK050113|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK046049|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC026566|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK077605|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK029884|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK052485|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC018320|Cbara1|216001|calcium binding atopy-related autoantigen 1	BC023022|Cbara1|216001|calcium binding atopy-related autoantigen 1	NM_144822|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK085553|Cbara1|216001|calcium binding atopy-related autoantigen 1	AK051470|Cbara1|216001|calcium binding atopy-related autoantigen 1
mm9_v1_chr7_-_53086135_53086313	0.744798	bHLH_family.p2	BC008121|Grwd1|101612|glutamate-rich WD repeat containing 1	BC083143|Grwd1|101612|glutamate-rich WD repeat containing 1	BC028896|Grwd1|101612|glutamate-rich WD repeat containing 1	NM_153419|Grwd1|101612|glutamate-rich WD repeat containing 1	AK077611|Grwd1|101612|glutamate-rich WD repeat containing 1	AB001539|Grwd1|101612|glutamate-rich WD repeat containing 1
mm9_v1_chr2_+_158620555_158620616	0.744299	bHLH_family.p2	BC029709|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	NM_145742|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK156955|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK155482|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK170952|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK004665|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35
mm9_v1_chr6_+_148893645_148893712	0.744173	bHLH_family.p2	BC106181|3010003L21Rik|109163|RIKEN cDNA 3010003L21 gene	AK087382|3010003L21Rik|109163|RIKEN cDNA 3010003L21 gene
mm9_v1_chr15_+_100058310_100058499	0.743859	bHLH_family.p2	BC006871|Atf1|11908|activating transcription factor 1	AK010428|Atf1|11908|activating transcription factor 1	M63725|Atf1|11908|activating transcription factor 1
mm9_v1_chr8_+_73063553_73063604	0.743032	bHLH_family.p2	NM_007924|Ell|13716|elongation factor RNA polymerase II	AK159027|Ell|13716|elongation factor RNA polymerase II	U80227|Ell|13716|elongation factor RNA polymerase II	BC014816|Ell|13716|elongation factor RNA polymerase II	BC024894|Ell|13716|elongation factor RNA polymerase II
mm9_v1_chr15_+_99548011_99548018	0.742543	bHLH_family.p2	AK018733|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	AK137134|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)
mm9_v1_chr5_+_137729501_137729514	0.741681	bHLH_family.p2	AK042335|Ache|11423|acetylcholinesterase	NM_009599|Ache|11423|acetylcholinesterase	AK043748|Ache|11423|acetylcholinesterase	AK140404|Ache|11423|acetylcholinesterase	AK036259|Ache|11423|acetylcholinesterase	AK046080|Ache|11423|acetylcholinesterase	AK036443|Ache|11423|acetylcholinesterase
mm9_v1_chr11_-_118263125_118263276	0.741369	bHLH_family.p2	AK152182|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK155031|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK137836|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	L16894|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	BC090658|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	NM_011150|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	X67809|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK153313|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK153396|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK079915|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK150021|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein
mm9_v1_chr11_-_101032604_101032630	0.741367	bHLH_family.p2	BC020025|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	NM_146030|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	AK154510|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	AK164128|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm9_v1_chr1_-_122017590_122017672	0.741259	bHLH_family.p2	X61431|Dbi|13167|diazepam binding inhibitor	AK008540|Dbi|13167|diazepam binding inhibitor	AK008576|Dbi|13167|diazepam binding inhibitor	AK018720|Dbi|13167|diazepam binding inhibitor	AK027906|Dbi|13167|diazepam binding inhibitor	AK145278|Dbi|13167|diazepam binding inhibitor	AK148753|Dbi|13167|diazepam binding inhibitor	AK020692|Dbi|13167|diazepam binding inhibitor	AK078428|Dbi|13167|diazepam binding inhibitor	NM_007830|Dbi|13167|diazepam binding inhibitor
mm9_v1_chr12_+_17551771_17551797	0.740926	bHLH_family.p2	AK166093|Odc1|18263|ornithine decarboxylase, structural 1	AK077679|Odc1|18263|ornithine decarboxylase, structural 1	AK139610|Odc1|18263|ornithine decarboxylase, structural 1	AK150283|Odc1|18263|ornithine decarboxylase, structural 1	AK150343|Odc1|18263|ornithine decarboxylase, structural 1	AK152525|Odc1|18263|ornithine decarboxylase, structural 1	AK168219|Odc1|18263|ornithine decarboxylase, structural 1	AK169214|Odc1|18263|ornithine decarboxylase, structural 1	AK172568|Odc1|18263|ornithine decarboxylase, structural 1	S64539|Odc1|18263|ornithine decarboxylase, structural 1	BC083122|Odc1|18263|ornithine decarboxylase, structural 1	BC033264|Odc1|18263|ornithine decarboxylase, structural 1	BC059826|Odc1|18263|ornithine decarboxylase, structural 1
mm9_v1_chr10_-_45189997_45190006	0.739245	bHLH_family.p2	BC089037|Lin28b|380669|lin-28 homolog B (C. elegans)	BC085193|Lin28b|380669|lin-28 homolog B (C. elegans)	DQ127225|Lin28b|380669|lin-28 homolog B (C. elegans)	NM_001031772|Lin28b|380669|lin-28 homolog B (C. elegans)
mm9_v1_chr7_+_129776837_129777102	0.739147	bHLH_family.p2	BC038148|Prkcb|18751|protein kinase C, beta	BC048553|Prkcb|18751|protein kinase C, beta
mm9_v1_chr1_-_134603848_134603902	0.738509	bHLH_family.p2	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr15_-_3945704_3945774	0.736864	bHLH_family.p2	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr6_-_91066809_91066837	0.734496	bHLH_family.p2	AK157272|Nup210|54563|nucleoporin 210	BC052468|Nup210|54563|nucleoporin 210	AK053417|Nup210|54563|nucleoporin 210	NM_018815|Nup210|54563|nucleoporin 210
mm9_v1_chr9_-_108166059_108166072	0.733773	bHLH_family.p2	AK038702|Dag1|13138|dystroglycan 1	NM_010017|Dag1|13138|dystroglycan 1
mm9_v1_chr9_-_21564723_21564737	0.732375	bHLH_family.p2	AK031680|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK075950|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116238|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116239|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_026282|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC086683|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC056965|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC098472|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr11_+_76485971_76485971	0.729567	bHLH_family.p2	BC048728|Bhlha9|320522|basic helix-loop-helix family, member a9	NM_177182|Bhlha9|320522|basic helix-loop-helix family, member a9
mm9_v1_chr5_+_77380762_77380839	0.727803	bHLH_family.p2	AK002669|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK079282|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK166264|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK013426|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK075949|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	AK010462|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	BC018153|Paics|67054|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm9_v1_chr6_-_82724366_82724447	0.727638	bHLH_family.p2	BC054472|Hk2|15277|hexokinase 2	AJ238540|Hk2|15277|hexokinase 2	AK019092|Hk2|15277|hexokinase 2	AK145936|Hk2|15277|hexokinase 2	AK009328|Hk2|15277|hexokinase 2	NM_013820|Hk2|15277|hexokinase 2
mm9_v1_chr16_-_94592243_94592351	0.726006	bHLH_family.p2	BC061116|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	AK004169|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	BC096569|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159616|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	AF216306|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr19_+_4125894_4126113	0.724059	bHLH_family.p2	AK009263|Tmem134|66990|transmembrane protein 134	AK010323|Tmem134|66990|transmembrane protein 134	AK166519|Tmem134|66990|transmembrane protein 134	NM_001078649|Tmem134|66990|transmembrane protein 134	NM_025889|Tmem134|66990|transmembrane protein 134	AK002220|Tmem134|66990|transmembrane protein 134	BC026765|Tmem134|66990|transmembrane protein 134	AK009745|Tmem134|66990|transmembrane protein 134	AK129014|Tmem134|66990|transmembrane protein 134	AK008515|Tmem134|66990|transmembrane protein 134
mm9_v1_chr8_+_46970860_46970893	0.721428	bHLH_family.p2	AK016447|Pdlim3|53318|PDZ and LIM domain 3	BC070418|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr11_+_3883638_3883715	0.719949	bHLH_family.p2	AK007645|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_001177703|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_016922|Gal3st1|53897|galactose-3-O-sulfotransferase 1	BC026806|Gal3st1|53897|galactose-3-O-sulfotransferase 1
mm9_v1_chr4_+_120712225_120712235	0.7182	bHLH_family.p2	BC029697|Col9a2|12840|collagen, type IX, alpha 2
mm9_v1_chr11_-_70796471_70796535	0.716393	bHLH_family.p2	AK010746|C1qbp|12261|complement component 1, q subcomponent binding protein	BC038075|C1qbp|12261|complement component 1, q subcomponent binding protein	AK169764|C1qbp|12261|complement component 1, q subcomponent binding protein	AK011868|C1qbp|12261|complement component 1, q subcomponent binding protein	NM_007573|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr14_-_69902984_69903047	0.715945	bHLH_family.p2	AK046008|Slc25a37|67712|solute carrier family 25, member 37	AK021203|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr6_+_117857771_117857856	0.715731	bHLH_family.p2	NM_001166428|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F	NM_001166429|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F
mm9_v1_chr6_-_116158008_116158043	0.715247	bHLH_family.p2	AK020619|9530062K07Rik|78739|RIKEN cDNA 9530062K07 gene
mm9_v1_chr6_+_83005215_83005221	0.711981	bHLH_family.p2	AK180069|Aup1|11993|ancient ubiquitous protein 1	AK209976|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr17_+_66472859_66472952	0.709282	bHLH_family.p2	BC079656|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	NM_001003919|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK076357|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK049419|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK152868|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)
mm9_v1_chr11_-_96777696_96777844	0.708968	bHLH_family.p2	AK153951|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK077853|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	BC002318|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	NM_030248|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK075791|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK165494|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK075771|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK050014|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK149765|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3	AK166476|Cdk5rap3|80280|CDK5 regulatory subunit associated protein 3
mm9_v1_chr7_+_51846254_51846289	0.70868	bHLH_family.p2	NM_008422|Kcnc3|16504|potassium voltage gated channel, Shaw-related subfamily, member 3
mm9_v1_chr13_-_105844882_105845009	0.707561	bHLH_family.p2	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr11_-_116713532_116713613	0.707484	bHLH_family.p2	AF250135|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr9_+_43875103_43875168	0.706911	bHLH_family.p2	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr10_-_60736018_60736185	0.706846	bHLH_family.p2	BC158014|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	BC157953|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	BC172106|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	AK145103|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	NM_001081127|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14
mm9_v1_chr17_+_43153516_43153557	0.706764	bHLH_family.p2	AK143175|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK033529|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK134704|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	BC016420|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr7_+_29593816_29593856	0.705121	bHLH_family.p2	AK044748|Hnrnpl|15388|heterogeneous nuclear ribonucleoprotein L
mm9_v1_chr17_+_42452895_42453084	0.704227	bHLH_family.p2	NM_028474|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	AK014270|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	BC145294|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene
mm9_v1_chr18_+_36446680_36446818	0.704148	bHLH_family.p2	AF017631|Pura|19290|purine rich element binding protein A
mm9_v1_chr11_+_100931369_100931476	0.703883	bHLH_family.p2	AK143546|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	NM_013792|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK170758|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK158045|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK164125|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	BC055733|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	U85247|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
mm9_v1_chr8_-_86222963_86223117	0.703409	bHLH_family.p2	AK134792|Pkn1|320795|protein kinase N1	BC052923|Pkn1|320795|protein kinase N1	NM_177262|Pkn1|320795|protein kinase N1	AK170556|Pkn1|320795|protein kinase N1	AK050643|Pkn1|320795|protein kinase N1
mm9_v1_chr19_-_45824047_45824092	0.703065	bHLH_family.p2	AK011749|Npm3|18150|nucleoplasmin 3	NM_008723|Npm3|18150|nucleoplasmin 3	U64450|Npm3|18150|nucleoplasmin 3	AK146603|Npm3|18150|nucleoplasmin 3	AK171848|Npm3|18150|nucleoplasmin 3	AK157198|Npm3|18150|nucleoplasmin 3	BC048491|Npm3|18150|nucleoplasmin 3
mm9_v1_chr11_-_69419330_69419349	0.702737	bHLH_family.p2	BC042467|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr12_+_3426883_3427022	0.701812	bHLH_family.p2	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr5_-_63157309_63157425	0.700798	bHLH_family.p2	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr19_+_25311451_25311475	0.700376	bHLH_family.p2	AK020911|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr12_-_74147698_74147707	0.700294	bHLH_family.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr12_+_3806474_3806522	0.699453	bHLH_family.p2	AF503866|Dnmt3a|13435|DNA methyltransferase 3A	AK158722|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr2_-_148701164_148701201	0.699156	bHLH_family.p2	AK161856|Cst3|13010|cystatin C	AK151160|Cst3|13010|cystatin C	AK013676|Cst3|13010|cystatin C	AK153533|Cst3|13010|cystatin C	AK166430|Cst3|13010|cystatin C
mm9_v1_chr19_+_23216035_23216244	0.698815	bHLH_family.p2	CT010185|Klf9|16601|Kruppel-like factor 9	Y14296|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr11_-_93747039_93747079	0.697667	bHLH_family.p2	BC119621|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	BC119622|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	AK167248|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	NM_001013375|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr13_+_21272015_21272138	0.697283	bHLH_family.p2	AK031744|Trim27|19720|tripartite motif-containing 27	BC069924|Trim27|19720|tripartite motif-containing 27	BC085503|Trim27|19720|tripartite motif-containing 27
mm9_v1_chr6_-_90666474_90666531	0.696662	bHLH_family.p2	NM_001134383|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr10_-_27336648_27336835	0.695964	bHLH_family.p2	U12147|Lama2|16773|laminin, alpha 2	AK046114|Lama2|16773|laminin, alpha 2	AK080131|Lama2|16773|laminin, alpha 2	AK030879|Lama2|16773|laminin, alpha 2	NM_008481|Lama2|16773|laminin, alpha 2	AK042011|Lama2|16773|laminin, alpha 2
mm9_v1_chr10_+_127759512_127759609	0.695636	bHLH_family.p2	AF186115|Cnpy2|56530|canopy 2 homolog (zebrafish)	NM_019953|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK150953|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr2_-_164658954_164659095	0.692914	bHLH_family.p2	AK004524|Neurl2|415115|neuralized-like 2 (Drosophila)	NM_001082974|Neurl2|415115|neuralized-like 2 (Drosophila)
mm9_v1_chr15_+_81494375_81494386	0.692905	bHLH_family.p2	AK145560|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237000|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237001|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237002|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr12_+_78339999_78340029	0.689439	bHLH_family.p2	AK048520|Fut8|53618|fucosyltransferase 8	NM_016893|Fut8|53618|fucosyltransferase 8	AK163494|Fut8|53618|fucosyltransferase 8
mm9_v1_chr7_-_72017803_72017939	0.689097	bHLH_family.p2	AF319979|Ndnl2|66647|necdin-like 2	BC034892|Ndnl2|66647|necdin-like 2	AK131157|Ndnl2|66647|necdin-like 2	AK010294|Ndnl2|66647|necdin-like 2	AK018250|Ndnl2|66647|necdin-like 2	BC092289|Ndnl2|66647|necdin-like 2	AK049759|Ndnl2|66647|necdin-like 2	AK076471|Ndnl2|66647|necdin-like 2	AK017727|Ndnl2|66647|necdin-like 2	NM_023239|Ndnl2|66647|necdin-like 2
mm9_v1_chr2_-_4984983_4985031	0.688794	bHLH_family.p2	BC061185|Optn|71648|optineurin	NM_181848|Optn|71648|optineurin
mm9_v1_chr15_+_74552040_74552053	0.687947	bHLH_family.p2	AK019809|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene
mm9_v1_chr11_-_97643718_97643767	0.687891	bHLH_family.p2	NM_022891|Rpl23|65019|ribosomal protein L23
mm9_v1_chr4_-_116666956_116667029	0.687486	bHLH_family.p2	AK002844|Urod|22275|uroporphyrinogen decarboxylase	AK007470|Urod|22275|uroporphyrinogen decarboxylase	AK135090|Urod|22275|uroporphyrinogen decarboxylase	BC008109|Urod|22275|uroporphyrinogen decarboxylase	NM_009478|Urod|22275|uroporphyrinogen decarboxylase	AK172426|Urod|22275|uroporphyrinogen decarboxylase
mm9_v1_chr11_-_94937951_94938027	0.687074	bHLH_family.p2	BC053031|Itga3|16400|integrin alpha 3	NM_013565|Itga3|16400|integrin alpha 3
mm9_v1_chr15_+_101974792_101974939	0.684327	bHLH_family.p2	X81584|Igfbp6|16012|insulin-like growth factor binding protein 6	BC012723|Igfbp6|16012|insulin-like growth factor binding protein 6	AK157982|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr7_-_86993011_86993179	0.683652	bHLH_family.p2	AK171427|Anpep|16790|alanyl (membrane) aminopeptidase
mm9_v1_chr12_+_25336138_25336389	0.682968	bHLH_family.p2	AK038397|Klf11|194655|Kruppel-like factor 11	AK050156|Klf11|194655|Kruppel-like factor 11	NM_178357|Klf11|194655|Kruppel-like factor 11	BC060642|Klf11|194655|Kruppel-like factor 11	AK161233|Klf11|194655|Kruppel-like factor 11	AK082838|Klf11|194655|Kruppel-like factor 11	AK036618|Klf11|194655|Kruppel-like factor 11	AK089044|Klf11|194655|Kruppel-like factor 11	AK084913|Klf11|194655|Kruppel-like factor 11	AK085319|Klf11|194655|Kruppel-like factor 11	AK054170|Klf11|194655|Kruppel-like factor 11	AJ459773|Klf11|194655|Kruppel-like factor 11
mm9_v1_chr7_-_52384079_52384102	0.682944	bHLH_family.p2	CT010169|Rpl13a|22121|ribosomal protein L13A	BC082289|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr2_+_32462471_32462603	0.681948	bHLH_family.p2	NM_001025310|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	NM_016973|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK157562|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK159158|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC036985|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AB035123|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC022924|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm9_v1_chr9_-_91260597_91260611	0.678661	bHLH_family.p2	BC063247|Zic1|22771|zinc finger protein of the cerebellum 1	AK159769|Zic1|22771|zinc finger protein of the cerebellum 1	AK139143|Zic1|22771|zinc finger protein of the cerebellum 1	BC060247|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr8_-_113329771_113329802	0.678306	bHLH_family.p2	AK008082|Il34|76527|interleukin 34	BC016254|Il34|76527|interleukin 34	NM_001135100|Il34|76527|interleukin 34	NM_029646|Il34|76527|interleukin 34
mm9_v1_chr5_+_124199713_124199760	0.678285	bHLH_family.p2	NM_001042421|Kntc1|208628|kinetochore associated 1	AK172905|Kntc1|208628|kinetochore associated 1
mm9_v1_chr17_+_25270317_25270453	0.678255	bHLH_family.p2	AK030444|Clcn7|26373|chloride channel 7	NM_011930|Clcn7|26373|chloride channel 7	BC054799|Clcn7|26373|chloride channel 7	BC050907|Clcn7|26373|chloride channel 7	BC053049|Clcn7|26373|chloride channel 7	AK128981|Clcn7|26373|chloride channel 7
mm9_v1_chr10_-_114688480_114688548	0.67815	bHLH_family.p2	AK014477|Tbc1d15|66687|TBC1 domain family, member 15	AK078875|Tbc1d15|66687|TBC1 domain family, member 15	AK147085|Tbc1d15|66687|TBC1 domain family, member 15	BC053395|Tbc1d15|66687|TBC1 domain family, member 15	NM_025706|Tbc1d15|66687|TBC1 domain family, member 15
mm9_v1_chr9_-_96264688_96264739	0.677936	bHLH_family.p2	NM_007502|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	U59761|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	BC079916|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK168273|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK032516|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK151700|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK151841|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK159532|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr7_-_90883999_90884032	0.677304	bHLH_family.p2	AF175292|Il16|16170|interleukin 16	NM_010551|Il16|16170|interleukin 16	AK220455|Il16|16170|interleukin 16	BC058709|Il16|16170|interleukin 16
mm9_v1_chr4_+_84851029_84851075	0.676813	bHLH_family.p2	AK035210|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr3_+_105762363_105762420	0.67582	bHLH_family.p2	AK078856|Wdr77|70465|WD repeat domain 77	AK048488|Wdr77|70465|WD repeat domain 77	AK168752|Wdr77|70465|WD repeat domain 77	AK050391|Wdr77|70465|WD repeat domain 77	AK168006|Wdr77|70465|WD repeat domain 77	NM_027432|Wdr77|70465|WD repeat domain 77	AK169128|Wdr77|70465|WD repeat domain 77	AK163839|Wdr77|70465|WD repeat domain 77
mm9_v1_chr11_-_118770873_118770885	0.672765	bHLH_family.p2	AK079086|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001024931|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039167|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039168|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr7_+_17460697_17460886	0.672415	bHLH_family.p2	AB073971|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr16_+_31664188_31664368	0.67231	bHLH_family.p2	AK143780|Dlg1|13383|discs, large homolog 1 (Drosophila)	AY159380|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr13_+_109106530_109106573	0.671376	bHLH_family.p2	NM_178683|Depdc1b|218581|DEP domain containing 1B	AK077676|Depdc1b|218581|DEP domain containing 1B	BC152330|Depdc1b|218581|DEP domain containing 1B	BC152331|Depdc1b|218581|DEP domain containing 1B	AK083480|Depdc1b|218581|DEP domain containing 1B	AK036550|Depdc1b|218581|DEP domain containing 1B	AK043283|Depdc1b|218581|DEP domain containing 1B
mm9_v1_chrX_-_90877453_90877549	0.670487	bHLH_family.p2	AK139486|Pola1|18968|polymerase (DNA directed), alpha 1	AK037836|Pola1|18968|polymerase (DNA directed), alpha 1	D13543|Pola1|18968|polymerase (DNA directed), alpha 1	BC138047|Pola1|18968|polymerase (DNA directed), alpha 1	D17384|Pola1|18968|polymerase (DNA directed), alpha 1	NM_008892|Pola1|18968|polymerase (DNA directed), alpha 1
mm9_v1_chr7_+_52960585_52960678	0.669962	bHLH_family.p2	NM_016974|Dbp|13170|D site albumin promoter binding protein	BC084676|Dbp|13170|D site albumin promoter binding protein	BC018323|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr9_-_113617224_113617390	0.668507	bHLH_family.p2	AJ005073|Pdcd6ip|18571|programmed cell death 6 interacting protein	AJ005074|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC051123|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC026823|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK167574|Pdcd6ip|18571|programmed cell death 6 interacting protein	AF119955|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK029827|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK129340|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK147736|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK031256|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK033943|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK145893|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK169704|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164677|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164678|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_011052|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chr2_+_121275069_121275180	0.667617	bHLH_family.p2	AK010749|Serf2|378702|small EDRK-rich factor 2	BC092136|Serf2|378702|small EDRK-rich factor 2	AK012395|Serf2|378702|small EDRK-rich factor 2	AK132746|Serf2|378702|small EDRK-rich factor 2	AK151362|Serf2|378702|small EDRK-rich factor 2	AK008802|Serf2|378702|small EDRK-rich factor 2	BC081455|Serf2|378702|small EDRK-rich factor 2	AF073297|Serf2|378702|small EDRK-rich factor 2	AK169106|Serf2|378702|small EDRK-rich factor 2	AK012603|Serf2|378702|small EDRK-rich factor 2	AK168858|Serf2|378702|small EDRK-rich factor 2	AK002351|Serf2|378702|small EDRK-rich factor 2	AK018746|Serf2|378702|small EDRK-rich factor 2
mm9_v1_chr8_+_46970814_46970842	0.665431	bHLH_family.p2	AF002283|Pdlim3|53318|PDZ and LIM domain 3	NM_016798|Pdlim3|53318|PDZ and LIM domain 3	AK078421|Pdlim3|53318|PDZ and LIM domain 3	AK141331|Pdlim3|53318|PDZ and LIM domain 3	AK164054|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr11_-_115948206_115948253	0.663859	bHLH_family.p2	BC031908|Wbp2|22378|WW domain binding protein 2	AK043037|Wbp2|22378|WW domain binding protein 2	AK150018|Wbp2|22378|WW domain binding protein 2	AK162810|Wbp2|22378|WW domain binding protein 2
mm9_v1_chr11_+_102050933_102051034	0.662894	bHLH_family.p2	AK002966|G6pc3|68401|glucose 6 phosphatase, catalytic, 3	BC069959|G6pc3|68401|glucose 6 phosphatase, catalytic, 3	NM_175935|G6pc3|68401|glucose 6 phosphatase, catalytic, 3
mm9_v1_chr6_-_145024487_145024530	0.662761	bHLH_family.p2	AK167368|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr16_-_5204036_5204064	0.662346	bHLH_family.p2	AK187933|Nagpa|27426|N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
mm9_v1_chr8_+_96738448_96738479	0.656594	bHLH_family.p2	AK169693|Nup93|71805|nucleoporin 93
mm9_v1_chr19_+_46647844_46647860	0.656455	bHLH_family.p2	AK162407|Sfxn2|94279|sideroflexin 2	NM_053196|Sfxn2|94279|sideroflexin 2	AK034875|Sfxn2|94279|sideroflexin 2	BC019808|Sfxn2|94279|sideroflexin 2
mm9_v1_chr9_-_41932195_41932209	0.655309	bHLH_family.p2	AB015790|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr11_+_68908718_68908785	0.655078	bHLH_family.p2	AK081813|Per1|18626|period homolog 1 (Drosophila)	AK154900|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr2_+_118938549_118938606	0.653806	bHLH_family.p2	AK045050|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK011242|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK148165|Rad51|19361|RAD51 homolog (S. cerevisiae)	NM_011234|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK160282|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK151157|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK151177|Rad51|19361|RAD51 homolog (S. cerevisiae)	BC027384|Rad51|19361|RAD51 homolog (S. cerevisiae)	D13803|Rad51|19361|RAD51 homolog (S. cerevisiae)	D13473|Rad51|19361|RAD51 homolog (S. cerevisiae)	AK076468|Rad51|19361|RAD51 homolog (S. cerevisiae)
mm9_v1_chr10_-_88289526_88289560	0.653425	bHLH_family.p2	AK145554|Utp20|70683|UTP20, small subunit (SSU) processome component, homolog (yeast)	BC084586|Utp20|70683|UTP20, small subunit (SSU) processome component, homolog (yeast)	NM_175158|Utp20|70683|UTP20, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr16_+_18776936_18776949	0.653126	bHLH_family.p2	AK077282|Cldn5|12741|claudin 5	NM_013805|Cldn5|12741|claudin 5	AF035814|Cldn5|12741|claudin 5	BC083341|Cldn5|12741|claudin 5
mm9_v1_chr8_-_86671651_86671718	0.652367	bHLH_family.p2	BC016188|Cc2d1a|212139|coiled-coil and C2 domain containing 1A	NM_145970|Cc2d1a|212139|coiled-coil and C2 domain containing 1A
mm9_v1_chr18_+_3507920_3507972	0.652336	bHLH_family.p2	AK011305|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK143185|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK164632|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK017303|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	NM_026505|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AK045192|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	AF153440|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)	BC019378|Bambi|68010|BMP and activin membrane-bound inhibitor, homolog (Xenopus laevis)
mm9_v1_chr16_-_20302299_20302462	0.650513	bHLH_family.p2	AK039142|Parl|381038|presenilin associated, rhomboid-like	BC083153|Parl|381038|presenilin associated, rhomboid-like	AK151652|Parl|381038|presenilin associated, rhomboid-like	NM_001005767|Parl|381038|presenilin associated, rhomboid-like	AK150980|Parl|381038|presenilin associated, rhomboid-like	AK207637|Parl|381038|presenilin associated, rhomboid-like
mm9_v1_chr9_+_58430031_58430196	0.646838	bHLH_family.p2	NM_009145|Nptn|20320|neuroplastin	BC039191|Nptn|20320|neuroplastin
mm9_v1_chr9_-_63247025_63247103	0.645897	bHLH_family.p2	BC100363|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116242|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116243|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK054471|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK009046|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK158428|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	NM_027090|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene
mm9_v1_chr7_-_125849230_125849252	0.644343	bHLH_family.p2	AF212860|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK005361|Gde1|56209|glycerophosphodiester phosphodiesterase 1	NM_019580|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr11_-_102742230_102742316	0.644272	bHLH_family.p2	U97079|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK172875|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK052242|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC052674|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC054778|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK150158|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165624|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK153473|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK154878|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165151|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_001109995|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_011431|Eftud2|20624|elongation factor Tu GTP binding domain containing 2
mm9_v1_chr2_+_167363696_167363726	0.644124	bHLH_family.p2	AK144478|Snai1|20613|snail homolog 1 (Drosophila)	BC034857|Snai1|20613|snail homolog 1 (Drosophila)	NM_011427|Snai1|20613|snail homolog 1 (Drosophila)
mm9_v1_chr2_-_32837527_32837604	0.643705	bHLH_family.p2	AF232061|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856043|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856044|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856045|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856046|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AJ245936|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	Y17802|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	BC090993|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	NM_019488|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK141193|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK170319|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK081806|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK155792|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8
mm9_v1_chr2_-_152777135_152777317	0.643641	bHLH_family.p2	BC116841|Dusp15|252864|dual specificity phosphatase-like 15	BC116843|Dusp15|252864|dual specificity phosphatase-like 15	BC144711|Dusp15|252864|dual specificity phosphatase-like 15	AF357887|Dusp15|252864|dual specificity phosphatase-like 15	NM_145744|Dusp15|252864|dual specificity phosphatase-like 15	NM_001159376|Dusp15|252864|dual specificity phosphatase-like 15
mm9_v1_chr15_+_99869071_99869185	0.643289	bHLH_family.p2	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr15_+_81494352_81494363	0.642953	bHLH_family.p2	AK146632|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr11_+_101177524_101177765	0.642229	bHLH_family.p2	AK140597|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK150939|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK171348|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	NM_011192|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC015255|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK156079|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC139818|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	D87911|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK178475|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK179381|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK180194|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	CT010198|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	U60330|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3
mm9_v1_chr7_-_139791248_139791319	0.640767	bHLH_family.p2	BC139757|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222444|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222445|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223361|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223362|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223363|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223674|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223675|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	NM_009123|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr8_-_26127211_26127343	0.640618	bHLH_family.p2	U41765|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC052710|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC047156|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK148174|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK155672|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK161778|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr11_-_51813857_51813993	0.639455	bHLH_family.p2	AK010432|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	AK161008|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	X96859|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	U57690|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	AK011363|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	BC132075|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	BC132077|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	AK152316|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	AK152645|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	AK153174|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	AK169229|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	AK147785|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)	NM_009458|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr12_-_91976586_91976877	0.639157	bHLH_family.p2	AK032038|Dio2|13371|deiodinase, iodothyronine, type II	AK045607|Dio2|13371|deiodinase, iodothyronine, type II	AF177196|Dio2|13371|deiodinase, iodothyronine, type II	AF177197|Dio2|13371|deiodinase, iodothyronine, type II	AF093137|Dio2|13371|deiodinase, iodothyronine, type II	BC125383|Dio2|13371|deiodinase, iodothyronine, type II	BC125385|Dio2|13371|deiodinase, iodothyronine, type II	AF096875|Dio2|13371|deiodinase, iodothyronine, type II	NM_010050|Dio2|13371|deiodinase, iodothyronine, type II
mm9_v1_chr7_+_25669603_25669732	0.636547	bHLH_family.p2	AK013524|Rps19|20085|ribosomal protein S19	AK031403|Rps19|20085|ribosomal protein S19	BC086938|Rps19|20085|ribosomal protein S19	AK012052|Rps19|20085|ribosomal protein S19	AK028244|Rps19|20085|ribosomal protein S19	BC034506|Rps19|20085|ribosomal protein S19	AK018725|Rps19|20085|ribosomal protein S19	NM_023133|Rps19|20085|ribosomal protein S19
mm9_v1_chr11_+_70514004_70514162	0.635803	bHLH_family.p2	AK029250|Kif1c|16562|kinesin family member 1C	NM_153103|Kif1c|16562|kinesin family member 1C	BC029286|Kif1c|16562|kinesin family member 1C	AK173007|Kif1c|16562|kinesin family member 1C
mm9_v1_chr10_-_77815056_77815248	0.635371	bHLH_family.p2	AK008965|Agpat3|28169|1-acylglycerol-3-phosphate O-acyltransferase 3
mm9_v1_chr19_+_10969876_10969936	0.634993	bHLH_family.p2	AK047693|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)	AB222602|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
mm9_v1_chr6_-_124915407_124915438	0.633957	bHLH_family.p2	NM_012003|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr8_-_106919551_106919743	0.633563	bHLH_family.p2	BC028852|Cmtm4|97487|CKLF-like MARVEL transmembrane domain containing 4	AF479815|Cmtm4|97487|CKLF-like MARVEL transmembrane domain containing 4	NM_153582|Cmtm4|97487|CKLF-like MARVEL transmembrane domain containing 4
mm9_v1_chr14_-_32643594_32643685	0.633143	bHLH_family.p2	BC051456|Ankrd28|105522|ankyrin repeat domain 28	BC094609|Ankrd28|105522|ankyrin repeat domain 28	NM_001024604|Ankrd28|105522|ankyrin repeat domain 28
mm9_v1_chr17_+_35226172_35226253	0.632838	bHLH_family.p2	BC029114|Abhd16a|193742|abhydrolase domain containing 16A	NM_178592|Abhd16a|193742|abhydrolase domain containing 16A
mm9_v1_chr11_-_83462722_83462879	0.63265	bHLH_family.p2	AK153155|Ccl3|20302|chemokine (C-C motif) ligand 3	EU366956|Ccl3|20302|chemokine (C-C motif) ligand 3	BC111443|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065939|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065940|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065941|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065942|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065943|Ccl3|20302|chemokine (C-C motif) ligand 3	J04491|Ccl3|20302|chemokine (C-C motif) ligand 3	X12531|Ccl3|20302|chemokine (C-C motif) ligand 3	M23447|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150590|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150634|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150698|Ccl3|20302|chemokine (C-C motif) ligand 3	AK151581|Ccl3|20302|chemokine (C-C motif) ligand 3	AK152648|Ccl3|20302|chemokine (C-C motif) ligand 3	AK155058|Ccl3|20302|chemokine (C-C motif) ligand 3	NM_011337|Ccl3|20302|chemokine (C-C motif) ligand 3
mm9_v1_chr11_-_75161767_75161884	0.632576	bHLH_family.p2	AK177196|Rpa1|68275|replication protein A1	AK197958|Rpa1|68275|replication protein A1	AK203654|Rpa1|68275|replication protein A1	AK167598|Rpa1|68275|replication protein A1	AK150785|Rpa1|68275|replication protein A1	AK165316|Rpa1|68275|replication protein A1	BC019119|Rpa1|68275|replication protein A1	AK035084|Rpa1|68275|replication protein A1	AK152296|Rpa1|68275|replication protein A1	AK153107|Rpa1|68275|replication protein A1	AK165944|Rpa1|68275|replication protein A1	AK169599|Rpa1|68275|replication protein A1	AK148035|Rpa1|68275|replication protein A1	AK168400|Rpa1|68275|replication protein A1	AK151590|Rpa1|68275|replication protein A1	AK153144|Rpa1|68275|replication protein A1	NM_001164223|Rpa1|68275|replication protein A1	NM_026653|Rpa1|68275|replication protein A1
mm9_v1_chrX_-_133275693_133275798	0.632431	bHLH_family.p2	NM_001168225|Morf4l2|56397|mortality factor 4 like 2	AK183992|Morf4l2|56397|mortality factor 4 like 2	AK129038|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr4_+_151699954_151699986	0.631984	bHLH_family.p2	BC007139|Rpl22|19934|ribosomal protein L22	AK003022|Rpl22|19934|ribosomal protein L22	AK169731|Rpl22|19934|ribosomal protein L22	AK009094|Rpl22|19934|ribosomal protein L22	D17653|Rpl22|19934|ribosomal protein L22	AK168353|Rpl22|19934|ribosomal protein L22	AK169078|Rpl22|19934|ribosomal protein L22	BC021344|Rpl22|19934|ribosomal protein L22	NM_009079|Rpl22|19934|ribosomal protein L22
mm9_v1_chr9_+_70526702_70526924	0.630646	bHLH_family.p2	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr10_+_85484631_85484753	0.630413	bHLH_family.p2	AK165455|Fbxo7|69754|F-box protein 7	NM_153195|Fbxo7|69754|F-box protein 7	AK150626|Fbxo7|69754|F-box protein 7	AK151025|Fbxo7|69754|F-box protein 7	AK152513|Fbxo7|69754|F-box protein 7	AK147797|Fbxo7|69754|F-box protein 7	BC032153|Fbxo7|69754|F-box protein 7
mm9_v1_chr11_-_79317583_79317590	0.630142	bHLH_family.p2	NM_019409|Omg|18377|oligodendrocyte myelin glycoprotein	AK136910|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr17_+_24769624_24769711	0.630046	bHLH_family.p2	AK033701|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	NM_008743|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	Y09688|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	BC138852|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	BC138855|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	BC145443|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)	AB006812|Nthl1|18207|nth (endonuclease III)-like 1 (E.coli)
mm9_v1_chr12_-_88488272_88488550	0.629642	bHLH_family.p2	AK043713|Pomt2|217734|protein-O-mannosyltransferase 2	AK050915|Pomt2|217734|protein-O-mannosyltransferase 2	BC079589|Pomt2|217734|protein-O-mannosyltransferase 2	BC052045|Pomt2|217734|protein-O-mannosyltransferase 2	BC062965|Pomt2|217734|protein-O-mannosyltransferase 2	AY090482|Pomt2|217734|protein-O-mannosyltransferase 2	AF246235|Pomt2|217734|protein-O-mannosyltransferase 2	AK043573|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr10_+_69559860_69560052	0.629607	bHLH_family.p2	NM_001111121|Ccdc6|76551|coiled-coil domain containing 6
mm9_v1_chr9_+_106379599_106379678	0.629467	bHLH_family.p2	AK076113|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	BC014703|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	NM_145620|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	AK156199|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)	AF368232|Rrp9|27966|RRP9, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr13_+_64533662_64533685	0.627877	bHLH_family.p2	AK044470|Cdk20|105278|cyclin-dependent kinase 20
mm9_v1_chr7_-_134852269_134852320	0.626873	bHLH_family.p2	BC005673|Bcl7c|12055|B-cell CLL/lymphoma 7C	NM_009746|Bcl7c|12055|B-cell CLL/lymphoma 7C	AK049064|Bcl7c|12055|B-cell CLL/lymphoma 7C
mm9_v1_chr11_+_85646309_85646316	0.626616	bHLH_family.p2	AK149348|Tbx2|21385|T-box 2
mm9_v1_chr16_-_96349334_96349335	0.624807	bHLH_family.p2	AK010763|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr8_+_13338741_13338850	0.624289	bHLH_family.p2	AK019997|Tfdp1|21781|transcription factor Dp 1	AK154037|Tfdp1|21781|transcription factor Dp 1	AK030820|Tfdp1|21781|transcription factor Dp 1	BC058633|Tfdp1|21781|transcription factor Dp 1	AK013180|Tfdp1|21781|transcription factor Dp 1
mm9_v1_chr2_-_144096253_144096308	0.623856	bHLH_family.p2	AK007676|Snx5|69178|sorting nexin 5	AK029463|Snx5|69178|sorting nexin 5	NM_024225|Snx5|69178|sorting nexin 5
mm9_v1_chr9_-_21564742_21564759	0.62041	bHLH_family.p2	AK153185|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK011728|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK167877|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr7_+_73984620_73984668	0.617796	bHLH_family.p2	AK045148|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	AK053131|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	NM_001033877|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	BC141170|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm9_v1_chr18_-_61008391_61008636	0.617138	bHLH_family.p2	U81030|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	AF001794|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC057342|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC060105|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC046608|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC052669|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	AK089518|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC021514|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	NM_001198984|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	NM_011552|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog
mm9_v1_chr8_+_109417525_109417537	0.616686	bHLH_family.p2	X80434|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)
mm9_v1_chr12_-_103057316_103057345	0.615635	bHLH_family.p2	
mm9_v1_chr5_-_77380226_77380264	0.614809	bHLH_family.p2	AK160542|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK167057|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK147750|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr3_+_87723608_87723648	0.612181	bHLH_family.p2	AK008117|Mrpl24|67707|mitochondrial ribosomal protein L24	AK008961|Mrpl24|67707|mitochondrial ribosomal protein L24
mm9_v1_chr15_-_103170514_103170552	0.611504	bHLH_family.p2	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr7_+_28954717_28954778	0.611414	bHLH_family.p2	BC092274|Fbl|14113|fibrillarin	BC003813|Fbl|14113|fibrillarin	NM_007991|Fbl|14113|fibrillarin	AK012620|Fbl|14113|fibrillarin	AK146328|Fbl|14113|fibrillarin	Z22593|Fbl|14113|fibrillarin
mm9_v1_chr8_+_72758086_72758131	0.610691	bHLH_family.p2	AK042293|Sugp2|234373|SURP and G patch domain containing 2	NM_001168290|Sugp2|234373|SURP and G patch domain containing 2	NM_172755|Sugp2|234373|SURP and G patch domain containing 2	AF518875|Sugp2|234373|SURP and G patch domain containing 2
mm9_v1_chr4_-_125879832_125879953	0.610678	bHLH_family.p2	AK034044|Thrap3|230753|thyroid hormone receptor associated protein 3	AK079601|Thrap3|230753|thyroid hormone receptor associated protein 3	BC026580|Thrap3|230753|thyroid hormone receptor associated protein 3	BC092239|Thrap3|230753|thyroid hormone receptor associated protein 3	AK169008|Thrap3|230753|thyroid hormone receptor associated protein 3	BC048391|Thrap3|230753|thyroid hormone receptor associated protein 3	NM_146153|Thrap3|230753|thyroid hormone receptor associated protein 3
mm9_v1_chr4_+_33118447_33118538	0.610163	bHLH_family.p2	BC024623|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1	AK003050|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1	AJ245899|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1	AK149985|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1	AK031669|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1
mm9_v1_chr18_-_35113903_35113993	0.610134	bHLH_family.p2	AK002634|Hspa9|15526|heat shock protein 9	AK004946|Hspa9|15526|heat shock protein 9	AK137109|Hspa9|15526|heat shock protein 9	D17556|Hspa9|15526|heat shock protein 9	L06896|Hspa9|15526|heat shock protein 9	D11089|Hspa9|15526|heat shock protein 9
mm9_v1_chr3_-_90269648_90269831	0.608487	bHLH_family.p2	BC139767|Npr1|18160|natriuretic peptide receptor 1	BC110659|Npr1|18160|natriuretic peptide receptor 1	NM_008727|Npr1|18160|natriuretic peptide receptor 1
mm9_v1_chr7_+_87331726_87331785	0.608124	bHLH_family.p2	AK145570|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	NM_013659|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK028896|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK173249|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr8_+_58773380_58773394	0.607411	bHLH_family.p2	AK002472|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)	AK146038|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)	BC021157|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)	U44389|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm9_v1_chr18_+_42671130_42671146	0.607289	bHLH_family.p2	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr2_-_119980243_119980354	0.606863	bHLH_family.p2	BC012272|Ehd4|98878|EH-domain containing 4	AK149760|Ehd4|98878|EH-domain containing 4	AK163835|Ehd4|98878|EH-domain containing 4	AK147186|Ehd4|98878|EH-domain containing 4	AK159235|Ehd4|98878|EH-domain containing 4	AK159597|Ehd4|98878|EH-domain containing 4	NM_133838|Ehd4|98878|EH-domain containing 4	AK166101|Ehd4|98878|EH-domain containing 4	AK169343|Ehd4|98878|EH-domain containing 4
mm9_v1_chr16_-_30388858_30388938	0.606729	bHLH_family.p2	
mm9_v1_chr14_+_63741339_63741389	0.606208	bHLH_family.p2	AK002456|Ctsb|13030|cathepsin B	AK170968|Ctsb|13030|cathepsin B	AK147192|Ctsb|13030|cathepsin B	AK149884|Ctsb|13030|cathepsin B	AK153047|Ctsb|13030|cathepsin B	AK151790|Ctsb|13030|cathepsin B
mm9_v1_chr19_+_6276885_6276962	0.606144	bHLH_family.p2	AK171047|Ehd1|13660|EH-domain containing 1	NM_010119|Ehd1|13660|EH-domain containing 1	AF173156|Ehd1|13660|EH-domain containing 1	AK167721|Ehd1|13660|EH-domain containing 1	AF099186|Ehd1|13660|EH-domain containing 1	AK154651|Ehd1|13660|EH-domain containing 1	AK160535|Ehd1|13660|EH-domain containing 1	AK166701|Ehd1|13660|EH-domain containing 1	AK159943|Ehd1|13660|EH-domain containing 1	AK077536|Ehd1|13660|EH-domain containing 1	AK012896|Ehd1|13660|EH-domain containing 1	AK159191|Ehd1|13660|EH-domain containing 1	AK168610|Ehd1|13660|EH-domain containing 1	AK172539|Ehd1|13660|EH-domain containing 1	BC043332|Ehd1|13660|EH-domain containing 1	BC037094|Ehd1|13660|EH-domain containing 1	BC054828|Ehd1|13660|EH-domain containing 1	AK152821|Ehd1|13660|EH-domain containing 1
mm9_v1_chr10_+_43198945_43198945	0.605561	bHLH_family.p2	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr14_-_47010184_47010343	0.604743	bHLH_family.p2	X56848|Bmp4|12159|bone morphogenetic protein 4	BC034053|Bmp4|12159|bone morphogenetic protein 4	BC013459|Bmp4|12159|bone morphogenetic protein 4	AK136527|Bmp4|12159|bone morphogenetic protein 4	NM_007554|Bmp4|12159|bone morphogenetic protein 4	AK145359|Bmp4|12159|bone morphogenetic protein 4
mm9_v1_chr13_+_24893310_24893891	0.604139	bHLH_family.p2	AK035718|BC005537|79555|cDNA sequence BC005537	NM_024473|BC005537|79555|cDNA sequence BC005537	AK078765|BC005537|79555|cDNA sequence BC005537	BC005537|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr1_-_165242744_165242943	0.60346	bHLH_family.p2	AK031075|Prrx1|18933|paired related homeobox 1	AB221686|Prrx1|18933|paired related homeobox 1	X59725|Prrx1|18933|paired related homeobox 1	L06502|Prrx1|18933|paired related homeobox 1
mm9_v1_chr11_-_61267383_61267510	0.6021	bHLH_family.p2	AB013097|Rnf112|22671|ring finger protein 112	BC013139|Rnf112|22671|ring finger protein 112	NM_009548|Rnf112|22671|ring finger protein 112	BC037118|Rnf112|22671|ring finger protein 112	AK131651|Rnf112|22671|ring finger protein 112
mm9_v1_chr9_-_88376937_88377419	0.6021	bHLH_family.p2	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr9_-_103268075_103268109	0.601843	bHLH_family.p2	NM_001134426|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_175565|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_175833|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr15_-_34012370_34012404	0.601348	bHLH_family.p2	
mm9_v1_chr11_-_53520811_53520848	0.60112	bHLH_family.p2	BC002033|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK018001|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK037641|Rad50|19360|RAD50 homolog (S. cerevisiae)	NM_009012|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr10_+_23943322_23943408	0.600858	bHLH_family.p2	AK014340|Moxd1|59012|monooxygenase, DBH-like 1	NM_021509|Moxd1|59012|monooxygenase, DBH-like 1	AK081586|Moxd1|59012|monooxygenase, DBH-like 1	AK030274|Moxd1|59012|monooxygenase, DBH-like 1	AK162030|Moxd1|59012|monooxygenase, DBH-like 1	AB041606|Moxd1|59012|monooxygenase, DBH-like 1	BC037684|Moxd1|59012|monooxygenase, DBH-like 1	BC057652|Moxd1|59012|monooxygenase, DBH-like 1
mm9_v1_chr4_+_120712170_120712207	0.600637	bHLH_family.p2	NM_007741|Col9a2|12840|collagen, type IX, alpha 2
mm9_v1_chr2_+_32307683_32307754	0.599154	bHLH_family.p2	BC057613|Naif1|71254|nuclear apoptosis inducing factor 1
mm9_v1_chr11_+_69393851_69393992	0.598378	bHLH_family.p2	NM_001127233|Trp53|22059|transformation related protein 53	NM_011640|Trp53|22059|transformation related protein 53	X01237|Trp53|22059|transformation related protein 53	AK086845|Trp53|22059|transformation related protein 53	BC005448|Trp53|22059|transformation related protein 53	AF151353|Trp53|22059|transformation related protein 53	AK083750|Trp53|22059|transformation related protein 53	AK079711|Trp53|22059|transformation related protein 53	AK087834|Trp53|22059|transformation related protein 53	AK138777|Trp53|22059|transformation related protein 53	AK147815|Trp53|22059|transformation related protein 53	M13872|Trp53|22059|transformation related protein 53	AY212017|Trp53|22059|transformation related protein 53	X00741|Trp53|22059|transformation related protein 53	AB021961|Trp53|22059|transformation related protein 53	AB017815|Trp53|22059|transformation related protein 53	AB017816|Trp53|22059|transformation related protein 53	AB020317|Trp53|22059|transformation related protein 53	M13873|Trp53|22059|transformation related protein 53	EU031806|Trp53|22059|transformation related protein 53	M13874|Trp53|22059|transformation related protein 53	AF051368|Trp53|22059|transformation related protein 53
mm9_v1_chr5_+_135462067_135462135	0.597361	bHLH_family.p2	AK002672|Cldn3|12739|claudin 3	NM_009902|Cldn3|12739|claudin 3	AK006514|Cldn3|12739|claudin 3	AK012677|Cldn3|12739|claudin 3
mm9_v1_chr13_+_56710896_56710979	0.597102	bHLH_family.p2	AK135536|Tgfbi|21810|transforming growth factor, beta induced	AK142323|Tgfbi|21810|transforming growth factor, beta induced	AK169912|Tgfbi|21810|transforming growth factor, beta induced	AK150969|Tgfbi|21810|transforming growth factor, beta induced	AK152365|Tgfbi|21810|transforming growth factor, beta induced	AK084431|Tgfbi|21810|transforming growth factor, beta induced	AK150449|Tgfbi|21810|transforming growth factor, beta induced	AK150833|Tgfbi|21810|transforming growth factor, beta induced	AK152662|Tgfbi|21810|transforming growth factor, beta induced	AK164373|Tgfbi|21810|transforming growth factor, beta induced	AK151680|Tgfbi|21810|transforming growth factor, beta induced	AK155828|Tgfbi|21810|transforming growth factor, beta induced	AK159711|Tgfbi|21810|transforming growth factor, beta induced	AK170495|Tgfbi|21810|transforming growth factor, beta induced	AK155572|Tgfbi|21810|transforming growth factor, beta induced	NM_009369|Tgfbi|21810|transforming growth factor, beta induced	L19932|Tgfbi|21810|transforming growth factor, beta induced	BC129900|Tgfbi|21810|transforming growth factor, beta induced	BC129901|Tgfbi|21810|transforming growth factor, beta induced
mm9_v1_chr11_+_55017825_55017912	0.596893	bHLH_family.p2	NM_153139|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	AY211262|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138556|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138558|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1
mm9_v1_chr3_+_105762425_105762460	0.596185	bHLH_family.p2	AK012014|Wdr77|70465|WD repeat domain 77	AK161812|Wdr77|70465|WD repeat domain 77	BC005755|Wdr77|70465|WD repeat domain 77
mm9_v1_chr8_+_109034784_109034845	0.595075	bHLH_family.p2	AK045041|Cdh3|12560|cadherin 3	AK164577|Cdh3|12560|cadherin 3	NM_007665|Cdh3|12560|cadherin 3	AK031265|Cdh3|12560|cadherin 3	NM_001037809|Cdh3|12560|cadherin 3	X06340|Cdh3|12560|cadherin 3	BC098459|Cdh3|12560|cadherin 3
mm9_v1_chr8_-_72963464_72963487	0.594699	bHLH_family.p2	AK129173|Crtc1|382056|CREB regulated transcription coactivator 1	BC080308|Crtc1|382056|CREB regulated transcription coactivator 1	NM_001004062|Crtc1|382056|CREB regulated transcription coactivator 1	BC056137|Crtc1|382056|CREB regulated transcription coactivator 1	BC068139|Crtc1|382056|CREB regulated transcription coactivator 1
mm9_v1_chr3_-_79646568_79646600	0.594066	bHLH_family.p2	AK079384|Tmem144|70652|transmembrane protein 144	NM_027495|Tmem144|70652|transmembrane protein 144	AK017808|Tmem144|70652|transmembrane protein 144
mm9_v1_chr1_-_59176902_59176978	0.593854	bHLH_family.p2	BC147243|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	BC147244|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK161697|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001033449|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr11_+_102622915_102622919	0.593743	bHLH_family.p2	AB009676|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr2_-_92274110_92274239	0.593059	bHLH_family.p2	AB003433|Cry2|12953|cryptochrome 2 (photolyase-like)	AK172994|Cry2|12953|cryptochrome 2 (photolyase-like)	BC054794|Cry2|12953|cryptochrome 2 (photolyase-like)	BC066799|Cry2|12953|cryptochrome 2 (photolyase-like)	AK037778|Cry2|12953|cryptochrome 2 (photolyase-like)	AK041696|Cry2|12953|cryptochrome 2 (photolyase-like)	AF156987|Cry2|12953|cryptochrome 2 (photolyase-like)	AK133781|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_001113333|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_009963|Cry2|12953|cryptochrome 2 (photolyase-like)	AK051524|Cry2|12953|cryptochrome 2 (photolyase-like)
mm9_v1_chr8_-_125135240_125135386	0.591633	bHLH_family.p2	BC004002|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK220245|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK033946|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AF111346|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK159592|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	NM_001193645|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	NM_016722|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase
mm9_v1_chr4_+_97444450_97444485	0.591195	bHLH_family.p2	AK054310|Nfia|18027|nuclear factor I/A	AK137731|Nfia|18027|nuclear factor I/A
mm9_v1_chr11_-_115873976_115874034	0.590815	bHLH_family.p2	AB027012|Galk1|14635|galactokinase 1	AK168716|Galk1|14635|galactokinase 1	BC050151|Galk1|14635|galactokinase 1	AK045694|Galk1|14635|galactokinase 1	BC016602|Galk1|14635|galactokinase 1	AK010340|Galk1|14635|galactokinase 1	AK011103|Galk1|14635|galactokinase 1	AK088151|Galk1|14635|galactokinase 1	NM_016905|Galk1|14635|galactokinase 1
mm9_v1_chr11_+_11586273_11586432	0.590374	bHLH_family.p2	BC138789|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chr4_+_147413185_147413279	0.590056	bHLH_family.p2	AF404271|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	NM_010840|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AK030192|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AF404272|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr11_+_98798970_98799011	0.589779	bHLH_family.p2	X56572|Rara|19401|retinoic acid receptor, alpha	NM_009024|Rara|19401|retinoic acid receptor, alpha	BC010216|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr5_+_64203750_64203816	0.589091	bHLH_family.p2	AK159779|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	BC004797|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr18_+_35989376_35989483	0.58876	bHLH_family.p2	AK005364|Cxxc5|67393|CXXC finger 5	BC089314|Cxxc5|67393|CXXC finger 5	NM_133687|Cxxc5|67393|CXXC finger 5
mm9_v1_chr10_-_126959446_126959510	0.587967	bHLH_family.p2	AK037339|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	BC004825|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK051207|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	NM_028230|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK162421|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)
mm9_v1_chr18_+_82723854_82723899	0.587566	bHLH_family.p2	NM_001025251|Mbp|17196|myelin basic protein	NM_001025255|Mbp|17196|myelin basic protein	NM_001025256|Mbp|17196|myelin basic protein	NM_001025258|Mbp|17196|myelin basic protein	NM_001025259|Mbp|17196|myelin basic protein	AK079621|Mbp|17196|myelin basic protein	NM_001025254|Mbp|17196|myelin basic protein
mm9_v1_chr16_-_20621287_20621552	0.587404	bHLH_family.p2	AK013788|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147550|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147736|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147745|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC157896|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	NM_028420|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2
mm9_v1_chr15_-_96473193_96473343	0.586868	bHLH_family.p2	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr12_-_77811533_77811533	0.586845	bHLH_family.p2	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr14_+_56223001_56223063	0.585935	bHLH_family.p2	U51992|Irf9|16391|interferon regulatory factor 9	BC005435|Irf9|16391|interferon regulatory factor 9
mm9_v1_chr19_+_55328356_55328506	0.585557	bHLH_family.p2	AK151378|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	BC031544|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK161024|Acsl5|433256|acyl-CoA synthetase long-chain family member 5
mm9_v1_chr17_-_56766191_56766343	0.583939	bHLH_family.p2	AY190302|Lonp1|74142|lon peptidase 1, mitochondrial	BC057365|Lonp1|74142|lon peptidase 1, mitochondrial	BC058735|Lonp1|74142|lon peptidase 1, mitochondrial	AK157474|Lonp1|74142|lon peptidase 1, mitochondrial	AK004820|Lonp1|74142|lon peptidase 1, mitochondrial	AK131910|Lonp1|74142|lon peptidase 1, mitochondrial	AK159302|Lonp1|74142|lon peptidase 1, mitochondrial	AK160071|Lonp1|74142|lon peptidase 1, mitochondrial	AK160076|Lonp1|74142|lon peptidase 1, mitochondrial	AK161983|Lonp1|74142|lon peptidase 1, mitochondrial	NM_028782|Lonp1|74142|lon peptidase 1, mitochondrial
mm9_v1_chr11_-_17111582_17111598	0.583527	bHLH_family.p2	AK146152|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK168177|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	NM_025443|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr10_-_126778634_126778717	0.583401	bHLH_family.p2	AF026305|Gli1|14632|GLI-Kruppel family member GLI1	NM_010296|Gli1|14632|GLI-Kruppel family member GLI1	AB025922|Gli1|14632|GLI-Kruppel family member GLI1
mm9_v1_chr10_-_75236102_75236123	0.583205	bHLH_family.p2	BC010753|Ddt|13202|D-dopachrome tautomerase	NM_010027|Ddt|13202|D-dopachrome tautomerase
mm9_v1_chr4_+_57580989_57581153	0.582571	bHLH_family.p2	AK045344|Palm2|242481|paralemmin 2	NM_172868|Palm2|242481|paralemmin 2	BC113156|Palm2|242481|paralemmin 2
mm9_v1_chr7_+_117161839_117161861	0.582277	bHLH_family.p2	AK187705|Ipo7|233726|importin 7
mm9_v1_chr8_+_18846471_18846514	0.581826	bHLH_family.p2	AK089885|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK082137|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
mm9_v1_chr11_-_69734682_69734699	0.579308	bHLH_family.p2	AK185373|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr7_+_73224518_73224593	0.578609	bHLH_family.p2	NM_024439|H47|109815|histocompatibility 47	BC011091|H47|109815|histocompatibility 47	AK005204|H47|109815|histocompatibility 47	BC096566|H47|109815|histocompatibility 47	AF335543|H47|109815|histocompatibility 47
mm9_v1_chr5_+_31357245_31357300	0.577852	bHLH_family.p2	BC137856|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144972|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144973|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr10_-_62254978_62254996	0.577572	bHLH_family.p2	BC079652|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC010199|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr3_-_63768461_63768654	0.577332	bHLH_family.p2	AK144703|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK135092|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC063104|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK136323|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC054395|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	NM_015728|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1
mm9_v1_chr9_+_60642248_60642431	0.576413	bHLH_family.p2	AK148900|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	AK087466|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	BC042415|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	NM_028283|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats	BC033470|Uaca|72565|uveal autoantigen with coiled-coil domains and ankyrin repeats
mm9_v1_chr7_-_31758185_31758231	0.575696	bHLH_family.p2	AK146807|Lsr|54135|lipolysis stimulated lipoprotein receptor	BC004672|Lsr|54135|lipolysis stimulated lipoprotein receptor
mm9_v1_chr7_+_116077936_116077945	0.575664	bHLH_family.p2	BC070473|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	BC083190|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr4_+_133130651_133130679	0.575566	bHLH_family.p2	AK050179|Gpatch3|242691|G patch domain containing 3	AK053051|Gpatch3|242691|G patch domain containing 3	BC121828|Gpatch3|242691|G patch domain containing 3	BC121829|Gpatch3|242691|G patch domain containing 3	NM_172876|Gpatch3|242691|G patch domain containing 3	BC096468|Gpatch3|242691|G patch domain containing 3
mm9_v1_chr7_+_134920839_134920910	0.575322	bHLH_family.p2	NM_178029|Setd1a|233904|SET domain containing 1A
mm9_v1_chr9_-_20877907_20878057	0.574441	bHLH_family.p2	AK010211|Fdx1l|68165|ferredoxin 1-like	AK008401|Fdx1l|68165|ferredoxin 1-like	AK020979|Fdx1l|68165|ferredoxin 1-like	NM_001039824|Fdx1l|68165|ferredoxin 1-like	BC061189|Fdx1l|68165|ferredoxin 1-like	BC172154|Fdx1l|68165|ferredoxin 1-like
mm9_v1_chr10_-_126648509_126648683	0.572652	bHLH_family.p2	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr5_+_98609872_98610052	0.571346	bHLH_family.p2	AK050852|Prdm8|77630|PR domain containing 8	NM_029947|Prdm8|77630|PR domain containing 8	AK036202|Prdm8|77630|PR domain containing 8	AK044713|Prdm8|77630|PR domain containing 8	BC141020|Prdm8|77630|PR domain containing 8
mm9_v1_chr7_-_82453166_82453213	0.570155	bHLH_family.p2	AK139478|Sv2b|64176|synaptic vesicle glycoprotein 2 b	AK140104|Sv2b|64176|synaptic vesicle glycoprotein 2 b	AK035927|Sv2b|64176|synaptic vesicle glycoprotein 2 b	AK043830|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr3_-_98143778_98143903	0.570021	bHLH_family.p2	BC086668|Phgdh|236539|3-phosphoglycerate dehydrogenase	BC110673|Phgdh|236539|3-phosphoglycerate dehydrogenase	AK147946|Phgdh|236539|3-phosphoglycerate dehydrogenase	AK076815|Phgdh|236539|3-phosphoglycerate dehydrogenase	AK169684|Phgdh|236539|3-phosphoglycerate dehydrogenase	NM_016966|Phgdh|236539|3-phosphoglycerate dehydrogenase
mm9_v1_chr7_+_5013744_5013873	0.569945	bHLH_family.p2	BC043071|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	NM_133671|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	AK078496|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	X64587|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
mm9_v1_chr4_-_147462051_147462172	0.568903	bHLH_family.p2	AF102548|Agtrap|11610|angiotensin II, type I receptor-associated protein	BC057196|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK007502|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK036598|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK007383|Agtrap|11610|angiotensin II, type I receptor-associated protein	AK152467|Agtrap|11610|angiotensin II, type I receptor-associated protein	NM_009642|Agtrap|11610|angiotensin II, type I receptor-associated protein
mm9_v1_chr18_+_75178449_75178498	0.568654	bHLH_family.p2	AK080149|Dym|69190|dymeclin	AK149628|Dym|69190|dymeclin	AK149879|Dym|69190|dymeclin	AK149891|Dym|69190|dymeclin	AK049909|Dym|69190|dymeclin	AK016957|Dym|69190|dymeclin
mm9_v1_chr1_+_17717497_17717562	0.566814	bHLH_family.p2	AK133870|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK137611|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	NM_031402|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AF329198|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK134273|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1
mm9_v1_chr12_+_114336416_114336628	0.566203	bHLH_family.p2	BC112910|Mta1|116870|metastasis associated 1	NM_054081|Mta1|116870|metastasis associated 1	AF288137|Mta1|116870|metastasis associated 1	AF463504|Mta1|116870|metastasis associated 1
mm9_v1_chr12_-_87165448_87165516	0.565407	bHLH_family.p2	AK152230|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	BC004591|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AF270646|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	NM_021446|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AK004480|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene
mm9_v1_chr6_-_24905939_24906124	0.565331	bHLH_family.p2	BC147241|Tmem229a|319832|transmembrane protein 229A	BC147242|Tmem229a|319832|transmembrane protein 229A	AK140056|Tmem229a|319832|transmembrane protein 229A	AK087465|Tmem229a|319832|transmembrane protein 229A	NM_177013|Tmem229a|319832|transmembrane protein 229A
mm9_v1_chr13_+_93381086_93381215	0.564378	bHLH_family.p2	AK165334|Serinc5|218442|serine incorporator 5	BC049189|Serinc5|218442|serine incorporator 5	BC062131|Serinc5|218442|serine incorporator 5	NM_172588|Serinc5|218442|serine incorporator 5	AK037699|Serinc5|218442|serine incorporator 5	AK163675|Serinc5|218442|serine incorporator 5	AB029501|Serinc5|218442|serine incorporator 5
mm9_v1_chr2_-_25221101_25221190	0.56407	bHLH_family.p2	BC043307|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077912|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK151942|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	NM_001033293|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK149178|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK168977|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK159787|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077550|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	BC130030|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
mm9_v1_chr1_+_82313139_82313186	0.562848	bHLH_family.p2	NM_029777|Rhbdd1|76867|rhomboid domain containing 1	AK142277|Rhbdd1|76867|rhomboid domain containing 1	AK029751|Rhbdd1|76867|rhomboid domain containing 1
mm9_v1_chr5_-_151397024_151397110	0.562304	bHLH_family.p2	AK042145|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK046116|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK138666|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK155341|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK131647|N4bp2l1|100637|NEDD4 binding protein 2-like 1	NM_133898|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK010587|N4bp2l1|100637|NEDD4 binding protein 2-like 1
mm9_v1_chr3_+_115710653_115710683	0.562291	bHLH_family.p2	BC094444|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chrX_-_131076136_131076235	0.561761	bHLH_family.p2	BC004796|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AF150081|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK088903|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK165573|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AB031055|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	BC094631|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	NM_013898|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK011402|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK090079|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)
mm9_v1_chr14_-_25306272_25306281	0.561442	bHLH_family.p2	AK039440|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr11_-_102680467_102680523	0.561366	bHLH_family.p2	BC050840|Gjc1|14615|gap junction protein, gamma 1	NM_001159382|Gjc1|14615|gap junction protein, gamma 1	BC023153|Gjc1|14615|gap junction protein, gamma 1	AY390397|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr17_-_90436488_90436574	0.559765	bHLH_family.p2	AJ006802|Nrxn1|18189|neurexin I
mm9_v1_chr15_-_103070227_103070257	0.559258	bHLH_family.p2	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr4_+_46463793_46463908	0.559093	bHLH_family.p2	AK011134|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
mm9_v1_chr9_+_45820921_45821106	0.558757	bHLH_family.p2	BC080688|Sik3|70661|SIK family kinase 3	BC063268|Sik3|70661|SIK family kinase 3
mm9_v1_chr10_+_80847168_80847285	0.558071	bHLH_family.p2	AK154104|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	NM_133964|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	AK004052|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	AK080664|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase	BC002295|Dohh|102115|deoxyhypusine hydroxylase/monooxygenase
mm9_v1_chr4_+_135700717_135701086	0.558036	bHLH_family.p2	AK014306|Id3|15903|inhibitor of DNA binding 3	AK201456|Id3|15903|inhibitor of DNA binding 3	AK192106|Id3|15903|inhibitor of DNA binding 3	AK192107|Id3|15903|inhibitor of DNA binding 3	AK192467|Id3|15903|inhibitor of DNA binding 3	AK199050|Id3|15903|inhibitor of DNA binding 3	AK200444|Id3|15903|inhibitor of DNA binding 3	AK202308|Id3|15903|inhibitor of DNA binding 3
mm9_v1_chr6_+_83115900_83115968	0.55705	bHLH_family.p2	NM_001198866|Dctn1|13191|dynactin 1	NM_001198867|Dctn1|13191|dynactin 1	AK171376|Dctn1|13191|dynactin 1	BC066061|Dctn1|13191|dynactin 1	AK172261|Dctn1|13191|dynactin 1
mm9_v1_chr4_-_69587193_69587277	0.556652	bHLH_family.p2	AK030082|Gm11223|100039888|stathmin 1 pseudogene
mm9_v1_chr1_+_174012641_174012773	0.556624	bHLH_family.p2	NM_009938|Copa|12847|coatomer protein complex subunit alpha	AK162632|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr7_-_26035683_26035785	0.556252	bHLH_family.p2	BC063092|Erf|13875|Ets2 repressor factor	BC053045|Erf|13875|Ets2 repressor factor	BC059176|Erf|13875|Ets2 repressor factor	AK159225|Erf|13875|Ets2 repressor factor	NM_010155|Erf|13875|Ets2 repressor factor
mm9_v1_chr15_+_25552273_25552341	0.556155	bHLH_family.p2	AK028552|Myo10|17909|myosin X	AK089482|Myo10|17909|myosin X	NM_019472|Myo10|17909|myosin X
mm9_v1_chr3_-_142058595_142058659	0.556122	bHLH_family.p2	AK147999|Pdlim5|56376|PDZ and LIM domain 5	AK003194|Pdlim5|56376|PDZ and LIM domain 5	AK089779|Pdlim5|56376|PDZ and LIM domain 5	NM_001190852|Pdlim5|56376|PDZ and LIM domain 5	NM_001190853|Pdlim5|56376|PDZ and LIM domain 5	NM_001190854|Pdlim5|56376|PDZ and LIM domain 5	NM_001190855|Pdlim5|56376|PDZ and LIM domain 5	NM_001190856|Pdlim5|56376|PDZ and LIM domain 5	NM_019808|Pdlim5|56376|PDZ and LIM domain 5	NM_019809|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr10_-_62486495_62486561	0.55373	bHLH_family.p2	BC147496|Hnrnph3|432467|heterogeneous nuclear ribonucleoprotein H3
mm9_v1_chr19_-_4201541_4201648	0.553484	bHLH_family.p2	BC082556|Rad9|19367|RAD9 homolog (S. pombe)	AF045663|Rad9|19367|RAD9 homolog (S. pombe)	NM_011237|Rad9|19367|RAD9 homolog (S. pombe)	AK138973|Rad9|19367|RAD9 homolog (S. pombe)	AK134293|Rad9|19367|RAD9 homolog (S. pombe)	AK165833|Rad9|19367|RAD9 homolog (S. pombe)
mm9_v1_chr5_+_135644245_135644412	0.553224	bHLH_family.p2	AK160439|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK131643|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK155076|Bcl7b|12054|B-cell CLL/lymphoma 7B	AJ011145|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK186334|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr10_-_108447674_108447736	0.552971	bHLH_family.p2	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr13_+_85329102_85329221	0.552577	bHLH_family.p2	BC038861|Ccnh|66671|cyclin H	AK217691|Ccnh|66671|cyclin H
mm9_v1_chr11_+_60230646_60230770	0.552392	bHLH_family.p2	AK017120|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	NM_025757|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK039435|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr7_+_51723446_51723520	0.552211	bHLH_family.p2	AK002872|Josd2|66124|Josephin domain containing 2	BC018244|Josd2|66124|Josephin domain containing 2
mm9_v1_chr4_+_46463917_46464167	0.551318	bHLH_family.p2	AK165807|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC003489|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC005628|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	NM_130889|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC093506|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	AK136648|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	AB025582|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
mm9_v1_chr5_-_92391581_92391802	0.551114	bHLH_family.p2	AK015870|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF305423|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK084295|Thap6|381650|THAP domain containing 6	AK018364|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF276959|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF071222|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK018488|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr5_+_109123159_109123286	0.550839	bHLH_family.p2	NM_001164259|Fgfrl1|116701|fibroblast growth factor receptor-like 1	NM_054071|Fgfrl1|116701|fibroblast growth factor receptor-like 1	AF321301|Fgfrl1|116701|fibroblast growth factor receptor-like 1
mm9_v1_chr9_+_37335673_37335728	0.548908	bHLH_family.p2	NM_027102|Esam|69524|endothelial cell-specific adhesion molecule	AK156399|Esam|69524|endothelial cell-specific adhesion molecule	BC019460|Esam|69524|endothelial cell-specific adhesion molecule	BC049249|Esam|69524|endothelial cell-specific adhesion molecule	AK009223|Esam|69524|endothelial cell-specific adhesion molecule	AF361882|Esam|69524|endothelial cell-specific adhesion molecule
mm9_v1_chr3_-_75760691_75760752	0.548737	bHLH_family.p2	BC086642|Golim4|73124|golgi integral membrane protein 4	BC089354|Golim4|73124|golgi integral membrane protein 4	NM_175193|Golim4|73124|golgi integral membrane protein 4
mm9_v1_chr2_-_160698733_160698735	0.547808	bHLH_family.p2	
mm9_v1_chr11_-_100956699_100956725	0.547575	bHLH_family.p2	FJ937967|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	AB000121|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	BC030169|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	NM_008949|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	AK133462|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	FJ937966|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm9_v1_chr17_-_46817717_46817797	0.547295	bHLH_family.p2	AJ278127|Klhdc3|71765|kelch domain containing 3	AK170623|Klhdc3|71765|kelch domain containing 3	AB053465|Klhdc3|71765|kelch domain containing 3	AK079082|Klhdc3|71765|kelch domain containing 3
mm9_v1_chr8_-_73919683_73919738	0.547145	bHLH_family.p2	BC026453|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK043798|Ushbp1|234395|Usher syndrome 1C binding protein 1	NM_181418|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK034939|Ushbp1|234395|Usher syndrome 1C binding protein 1
mm9_v1_chr9_+_102528606_102528660	0.546965	bHLH_family.p2	NM_181394|Anapc13|69010|anaphase promoting complex subunit 13	BC028526|Anapc13|69010|anaphase promoting complex subunit 13
mm9_v1_chr9_-_63605917_63606020	0.545378	bHLH_family.p2	BC022904|Smad3|17127|MAD homolog 3 (Drosophila)
mm9_v1_chr19_+_5038825_5038950	0.544499	bHLH_family.p2	AK158899|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	NM_175383|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK050347|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	BC069927|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK083857|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm9_v1_chr6_+_122258946_122259119	0.543207	bHLH_family.p2	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr8_-_87323958_87324038	0.542946	bHLH_family.p2	BC003766|Nfix|18032|nuclear factor I/X	Y07689|Nfix|18032|nuclear factor I/X
mm9_v1_chr5_-_31210160_31210170	0.542796	bHLH_family.p2	NM_024460|Ost4|67695|oligosaccharyltransferase 4 homolog (S. cerevisiae)
mm9_v1_chr12_-_103057112_103057240	0.54206	bHLH_family.p2	AK165018|Fbln5|23876|fibulin 5	AK085170|Fbln5|23876|fibulin 5	AK084895|Fbln5|23876|fibulin 5
mm9_v1_chr11_+_100981384_100981545	0.540302	bHLH_family.p2	AK160125|Tubg1|103733|tubulin, gamma 1	BC006581|Tubg1|103733|tubulin, gamma 1	NM_134024|Tubg1|103733|tubulin, gamma 1	AK183189|Tubg1|103733|tubulin, gamma 1	AK192509|Tubg1|103733|tubulin, gamma 1	AK154019|Tubg1|103733|tubulin, gamma 1	AK196283|Tubg1|103733|tubulin, gamma 1
mm9_v1_chr5_+_76569257_76569352	0.5398	bHLH_family.p2	AK075635|Srd5a3|57357|steroid 5 alpha-reductase 3	AK139290|Srd5a3|57357|steroid 5 alpha-reductase 3	BC145647|Srd5a3|57357|steroid 5 alpha-reductase 3	NM_020611|Srd5a3|57357|steroid 5 alpha-reductase 3	AK138681|Srd5a3|57357|steroid 5 alpha-reductase 3	BC014771|Srd5a3|57357|steroid 5 alpha-reductase 3	AK040198|Srd5a3|57357|steroid 5 alpha-reductase 3	AK162527|Srd5a3|57357|steroid 5 alpha-reductase 3	BC039564|Srd5a3|57357|steroid 5 alpha-reductase 3
mm9_v1_chr10_-_126959397_126959444	0.537403	bHLH_family.p2	BC051396|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK012355|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK169192|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)
mm9_v1_chr4_+_126287086_126287097	0.536798	bHLH_family.p2	NM_001013755|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene	NM_001145950|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene
mm9_v1_chr15_-_34608458_34608547	0.535396	bHLH_family.p2	AK033975|Nipal2|223473|NIPA-like domain containing 2	NM_145469|Nipal2|223473|NIPA-like domain containing 2	BC016107|Nipal2|223473|NIPA-like domain containing 2	AK132530|Nipal2|223473|NIPA-like domain containing 2	AK087325|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr13_+_23646900_23646904	0.534789	bHLH_family.p2	AK155411|Hist1h1d|14957|histone cluster 1, H1d	NM_145713|Hist1h1d|14957|histone cluster 1, H1d	AK054269|Hist1h1d|14957|histone cluster 1, H1d	BC117045|Hist1h1d|14957|histone cluster 1, H1d	BC119173|Hist1h1d|14957|histone cluster 1, H1d
mm9_v1_chr12_+_77356370_77356407	0.533865	bHLH_family.p2	AK042958|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK165951|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	BC008523|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK133848|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK159812|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr17_-_34764290_34764395	0.533528	bHLH_family.p2	BC052330|Ppt2|54397|palmitoyl-protein thioesterase 2
mm9_v1_chr17_-_71351465_71351521	0.53337	bHLH_family.p2	BC089050|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	BC029180|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK028020|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr11_-_106243873_106243954	0.533246	bHLH_family.p2	AK007801|Icam2|15896|intercellular adhesion molecule 2	BC039128|Icam2|15896|intercellular adhesion molecule 2	BC039970|Icam2|15896|intercellular adhesion molecule 2	NM_010494|Icam2|15896|intercellular adhesion molecule 2	X65493|Icam2|15896|intercellular adhesion molecule 2
mm9_v1_chr12_+_78340039_78340051	0.532456	bHLH_family.p2	AK134537|Fut8|53618|fucosyltransferase 8
mm9_v1_chr11_-_96805259_96805283	0.532429	bHLH_family.p2	BC010785|Pnpo|103711|pyridoxine 5'-phosphate oxidase	AK154004|Pnpo|103711|pyridoxine 5'-phosphate oxidase
mm9_v1_chr5_+_64551449_64551546	0.53137	bHLH_family.p2	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr11_+_74644411_74644428	0.531365	bHLH_family.p2	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr19_-_30249899_30249920	0.530883	bHLH_family.p2	AK080789|Gldc|104174|glycine decarboxylase	BC017135|Gldc|104174|glycine decarboxylase	NM_138595|Gldc|104174|glycine decarboxylase	AK080937|Gldc|104174|glycine decarboxylase	AK139929|Gldc|104174|glycine decarboxylase
mm9_v1_chr1_+_39592594_39592679	0.530792	bHLH_family.p2	AK144692|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK010503|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC049091|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	NM_028043|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	AK167440|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed	BC050812|D1Bwg0212e|52846|DNA segment, Chr 1, Brigham & Women's Genetics 0212 expressed
mm9_v1_chr1_-_72258684_72258880	0.529677	bHLH_family.p2	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chr4_-_46402288_46402309	0.529159	bHLH_family.p2	AK044073|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK153576|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	NM_029086|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	BC092543|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK017931|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene	AK052584|5830415F09Rik|74753|RIKEN cDNA 5830415F09 gene
mm9_v1_chr15_+_76175034_76175081	0.529104	bHLH_family.p2	AK186904|Cyc1|66445|cytochrome c-1
mm9_v1_chr1_+_176431933_176432011	0.528047	bHLH_family.p2	BC094606|Fmn2|54418|formin 2	NM_019445|Fmn2|54418|formin 2	AF218940|Fmn2|54418|formin 2
mm9_v1_chr11_+_77992183_77992219	0.527062	bHLH_family.p2	BC039182|Tlcd1|68385|TLC domain containing 1	AK165432|Tlcd1|68385|TLC domain containing 1
mm9_v1_chr16_-_31201251_31201348	0.525791	bHLH_family.p2	AK032916|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK129041|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK044812|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK020591|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	NM_030138|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chr2_+_28696131_28696288	0.525768	bHLH_family.p2	AK144739|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	BC132351|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	AK166327|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	BC066017|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
mm9_v1_chr10_+_78243239_78243246	0.525754	bHLH_family.p2	AK159197|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	NM_009200|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	D83262|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
mm9_v1_chr11_+_43287820_43287845	0.524103	bHLH_family.p2	NM_026979|C1qtnf2|69183|C1q and tumor necrosis factor related protein 2
mm9_v1_chr4_+_140462254_140462341	0.523658	bHLH_family.p2	NM_008812|Padi2|18600|peptidyl arginine deiminase, type II	AK158382|Padi2|18600|peptidyl arginine deiminase, type II	AK171275|Padi2|18600|peptidyl arginine deiminase, type II	AK148156|Padi2|18600|peptidyl arginine deiminase, type II	AK154814|Padi2|18600|peptidyl arginine deiminase, type II	BC049947|Padi2|18600|peptidyl arginine deiminase, type II	BC040350|Padi2|18600|peptidyl arginine deiminase, type II	D16580|Padi2|18600|peptidyl arginine deiminase, type II
mm9_v1_chr11_-_97490978_97491083	0.522998	bHLH_family.p2	AK087411|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	BC055770|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	NM_175332|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene
mm9_v1_chr7_-_106289616_106289631	0.52271	bHLH_family.p2	BC034176|Uvrag|78610|UV radiation resistance associated gene	AK020590|Uvrag|78610|UV radiation resistance associated gene	AK043084|Uvrag|78610|UV radiation resistance associated gene	AK165185|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr6_+_48543879_48544012	0.521885	bHLH_family.p2	NM_001079901|Repin1|58887|replication initiator 1	NM_001079902|Repin1|58887|replication initiator 1	NM_001079903|Repin1|58887|replication initiator 1	NM_001079904|Repin1|58887|replication initiator 1	NM_001079905|Repin1|58887|replication initiator 1	NM_175099|Repin1|58887|replication initiator 1	AK170797|Repin1|58887|replication initiator 1	BC092301|Repin1|58887|replication initiator 1	AK089041|Repin1|58887|replication initiator 1	AK137310|Repin1|58887|replication initiator 1	BC085128|Repin1|58887|replication initiator 1
mm9_v1_chr4_+_116230293_116230350	0.520405	bHLH_family.p2	AK037224|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK133761|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK019942|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	BC066034|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	NM_029868|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr11_-_6100014_6100127	0.520063	bHLH_family.p2	BC052089|Nudcd3|209586|NudC domain containing 3	AK215033|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr17_-_31774075_31774182	0.519743	bHLH_family.p2	BC013472|Cbs|12411|cystathionine beta-synthase	NM_178224|Cbs|12411|cystathionine beta-synthase	BC013480|Cbs|12411|cystathionine beta-synthase	BC026595|Cbs|12411|cystathionine beta-synthase	NM_144855|Cbs|12411|cystathionine beta-synthase	BC022144|Cbs|12411|cystathionine beta-synthase	AK077669|Cbs|12411|cystathionine beta-synthase	AK085692|Cbs|12411|cystathionine beta-synthase	U43721|Cbs|12411|cystathionine beta-synthase
mm9_v1_chr8_-_11312686_11312717	0.518834	bHLH_family.p2	BC072650|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr7_+_54305973_54306101	0.517208	bHLH_family.p2	AK007864|Tmem86a|67893|transmembrane protein 86A	NM_026436|Tmem86a|67893|transmembrane protein 86A	AK075589|Tmem86a|67893|transmembrane protein 86A	BC056619|Tmem86a|67893|transmembrane protein 86A
mm9_v1_chr6_+_120786207_120786296	0.516413	bHLH_family.p2	AK171256|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK148007|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK031018|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK088417|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK143457|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK132774|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK047223|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC029016|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	NM_153516|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK165068|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK168833|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr19_-_40261753_40261779	0.515067	bHLH_family.p2	BC022151|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC023894|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AY227736|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC034831|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC016494|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AK050082|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	NM_145499|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70
mm9_v1_chr2_-_130223285_130223364	0.514975	bHLH_family.p2	BC003713|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	AF077738|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	NM_019696|Cpxm1|56264|carboxypeptidase X 1 (M14 family)
mm9_v1_chr9_+_83728331_83728347	0.51448	bHLH_family.p2	AX775731|Ttk|22137|Ttk protein kinase	M86377|Ttk|22137|Ttk protein kinase
mm9_v1_chr16_+_20672890_20672931	0.514081	bHLH_family.p2	AK150050|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066103|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC079675|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr8_+_113557991_113558130	0.513854	bHLH_family.p2	AK044451|Aars|234734|alanyl-tRNA synthetase
mm9_v1_chr2_-_72931338_72931457	0.512315	bHLH_family.p2	
mm9_v1_chr1_-_183142055_183142112	0.512242	bHLH_family.p2	AK082326|Wdr26|226757|WD repeat domain 26	NM_145514|Wdr26|226757|WD repeat domain 26
mm9_v1_chr4_+_98590642_98590668	0.511704	bHLH_family.p2	BC020007|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr6_+_72305440_72305522	0.510619	bHLH_family.p2	NM_144916|Tmem150a|232086|transmembrane protein 150A	BC028825|Tmem150a|232086|transmembrane protein 150A
mm9_v1_chr15_-_78403110_78403220	0.510569	bHLH_family.p2	X53247|Rac2|19354|RAS-related C3 botulinum substrate 2	BC005455|Rac2|19354|RAS-related C3 botulinum substrate 2	AK007561|Rac2|19354|RAS-related C3 botulinum substrate 2	AK088805|Rac2|19354|RAS-related C3 botulinum substrate 2	AK144136|Rac2|19354|RAS-related C3 botulinum substrate 2	AK088415|Rac2|19354|RAS-related C3 botulinum substrate 2	AK011045|Rac2|19354|RAS-related C3 botulinum substrate 2	AK171321|Rac2|19354|RAS-related C3 botulinum substrate 2	NM_009008|Rac2|19354|RAS-related C3 botulinum substrate 2
mm9_v1_chr18_+_36508277_36508452	0.509494	bHLH_family.p2	NM_001081365|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	BC028765|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK167679|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK002512|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK028217|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK089711|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene
mm9_v1_chr8_+_13105702_13105757	0.507799	bHLH_family.p2	NM_146207|Cul4a|99375|cullin 4A	AK144802|Cul4a|99375|cullin 4A	AK166251|Cul4a|99375|cullin 4A	AK170722|Cul4a|99375|cullin 4A	AK168215|Cul4a|99375|cullin 4A	AK084008|Cul4a|99375|cullin 4A	BC010211|Cul4a|99375|cullin 4A	AK150237|Cul4a|99375|cullin 4A
mm9_v1_chr7_-_144602404_144602448	0.507371	bHLH_family.p2	AK020460|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	AK051763|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	AK078159|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	AK171836|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene	NM_029886|9430038I01Rik|77252|RIKEN cDNA 9430038I01 gene
mm9_v1_chr7_+_127986324_127986492	0.50697	bHLH_family.p2	AK028524|Eef2k|13631|eukaryotic elongation factor-2 kinase	BC003433|Eef2k|13631|eukaryotic elongation factor-2 kinase	NM_007908|Eef2k|13631|eukaryotic elongation factor-2 kinase
mm9_v1_chr6_+_49269351_49269403	0.505768	bHLH_family.p2	AK018135|Ccdc126|57895|coiled-coil domain containing 126	NM_175098|Ccdc126|57895|coiled-coil domain containing 126	BC117837|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr1_+_168184269_168184413	0.505667	bHLH_family.p2	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr17_+_87506971_87507037	0.504941	bHLH_family.p2	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr8_+_98201984_98202229	0.50477	bHLH_family.p2	
mm9_v1_chr12_-_80397239_80397289	0.504671	bHLH_family.p2	AK220333|Zfyve26|211978|zinc finger, FYVE domain containing 26	BC141359|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK132344|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK041668|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK135518|Zfyve26|211978|zinc finger, FYVE domain containing 26	NM_001008550|Zfyve26|211978|zinc finger, FYVE domain containing 26
mm9_v1_chrX_+_68468175_68468259	0.504635	bHLH_family.p2	AK149997|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164191|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164192|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_001164193|Mtm1|17772|X-linked myotubular myopathy gene 1	AK171475|Mtm1|17772|X-linked myotubular myopathy gene 1	AK031794|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166452|Mtm1|17772|X-linked myotubular myopathy gene 1	BC090984|Mtm1|17772|X-linked myotubular myopathy gene 1	BC051022|Mtm1|17772|X-linked myotubular myopathy gene 1	AK032870|Mtm1|17772|X-linked myotubular myopathy gene 1	BC066847|Mtm1|17772|X-linked myotubular myopathy gene 1	AF073996|Mtm1|17772|X-linked myotubular myopathy gene 1	NM_019926|Mtm1|17772|X-linked myotubular myopathy gene 1	AK166759|Mtm1|17772|X-linked myotubular myopathy gene 1
mm9_v1_chr9_-_48288692_48288741	0.504503	bHLH_family.p2	AK007731|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	NM_024233|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)	AK090202|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr16_-_85173851_85173917	0.504426	bHLH_family.p2	X59379|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr4_-_47004585_47004626	0.503122	bHLH_family.p2	NM_001081141|Gabbr2|242425|gamma-aminobutyric acid (GABA) B receptor, 2
mm9_v1_chr12_+_8778201_8778241	0.502377	bHLH_family.p2	NM_011519|Sdc1|20969|syndecan 1	BC010560|Sdc1|20969|syndecan 1	X15487|Sdc1|20969|syndecan 1	AK162092|Sdc1|20969|syndecan 1	AK132491|Sdc1|20969|syndecan 1
mm9_v1_chr4_-_55545337_55545348	0.501812	bHLH_family.p2	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr11_-_3995299_3995466	0.501752	bHLH_family.p2	AK167990|Mtfp1|67900|mitochondrial fission process 1	AK006148|Mtfp1|67900|mitochondrial fission process 1	BC058737|Mtfp1|67900|mitochondrial fission process 1	AK010971|Mtfp1|67900|mitochondrial fission process 1	AK012058|Mtfp1|67900|mitochondrial fission process 1	AK078381|Mtfp1|67900|mitochondrial fission process 1	NM_026443|Mtfp1|67900|mitochondrial fission process 1
mm9_v1_chr8_+_77617542_77617574	0.499753	bHLH_family.p2	AK151627|Hmox1|15368|heme oxygenase (decycling) 1	BC010757|Hmox1|15368|heme oxygenase (decycling) 1	M33203|Hmox1|15368|heme oxygenase (decycling) 1	X13356|Hmox1|15368|heme oxygenase (decycling) 1
mm9_v1_chr14_-_51544484_51544489	0.498748	bHLH_family.p2	BC091757|Osgep|66246|O-sialoglycoprotein endopeptidase
mm9_v1_chr4_-_86876311_86876327	0.498628	bHLH_family.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr2_-_75542535_75542545	0.498335	bHLH_family.p2	BC057948|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr19_+_29175864_29175994	0.497528	bHLH_family.p2	AK009709|Rcl1|59028|RNA terminal phosphate cyclase-like 1	NM_021525|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK168153|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK012585|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK077751|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC053404|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC004574|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK153377|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AJ276895|Rcl1|59028|RNA terminal phosphate cyclase-like 1
mm9_v1_chr3_+_146067605_146067687	0.497168	bHLH_family.p2	AK049080|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK173064|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK031356|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	BC031527|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	BC021749|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	NM_138744|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein	AK043865|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein
mm9_v1_chr16_+_87354429_87354497	0.496238	bHLH_family.p2	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chr6_-_134582365_134582505	0.495054	bHLH_family.p2	BC039930|Mansc1|67729|MANSC domain containing 1	AK046837|Mansc1|67729|MANSC domain containing 1	AK018635|Mansc1|67729|MANSC domain containing 1	AK002644|Mansc1|67729|MANSC domain containing 1	AK033526|Mansc1|67729|MANSC domain containing 1	AK018660|Mansc1|67729|MANSC domain containing 1	AK171842|Mansc1|67729|MANSC domain containing 1	AK033557|Mansc1|67729|MANSC domain containing 1	NM_026345|Mansc1|67729|MANSC domain containing 1
mm9_v1_chr6_+_125045998_125046234	0.494283	bHLH_family.p2	AK147695|Chd4|107932|chromodomain helicase DNA binding protein 4	AK040005|Chd4|107932|chromodomain helicase DNA binding protein 4	AK132004|Chd4|107932|chromodomain helicase DNA binding protein 4	BC058578|Chd4|107932|chromodomain helicase DNA binding protein 4	NM_145979|Chd4|107932|chromodomain helicase DNA binding protein 4	AK145532|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr18_+_82644535_82644761	0.493929	bHLH_family.p2	L07508|Mbp|17196|myelin basic protein	AK172324|Mbp|17196|myelin basic protein	L07507|Mbp|17196|myelin basic protein	AK039047|Mbp|17196|myelin basic protein	BC051094|Mbp|17196|myelin basic protein	AK040716|Mbp|17196|myelin basic protein	X67319|Mbp|17196|myelin basic protein	L07509|Mbp|17196|myelin basic protein
mm9_v1_chr11_-_120440311_120440499	0.493237	bHLH_family.p2	AK188655|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK187656|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr17_-_35137690_35137738	0.493134	bHLH_family.p2	L78788|D17H6S56E-5|110956|DNA segment, Chr 17, human D6S56E 5	AK088743|D17H6S56E-5|110956|DNA segment, Chr 17, human D6S56E 5
mm9_v1_chr18_+_43367236_43367350	0.493106	bHLH_family.p2	AK042599|Stk32a|269019|serine/threonine kinase 32A	BC055002|Stk32a|269019|serine/threonine kinase 32A	AK044474|Stk32a|269019|serine/threonine kinase 32A	AK036266|Stk32a|269019|serine/threonine kinase 32A	NM_178749|Stk32a|269019|serine/threonine kinase 32A
mm9_v1_chr7_+_51639464_51639527	0.492767	bHLH_family.p2	NM_001114116|Syt3|20981|synaptotagmin III	NM_016663|Syt3|20981|synaptotagmin III
mm9_v1_chr8_-_119517339_119517451	0.492406	bHLH_family.p2	AK003788|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	AK019983|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	NM_026572|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	BC014745|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)	AK050373|Gcsh|68133|glycine cleavage system protein H (aminomethyl carrier)
mm9_v1_chr17_+_35035395_35035464	0.489406	bHLH_family.p2	BC058357|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2	AB077209|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2	NM_147151|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2
mm9_v1_chr17_-_51318492_51318600	0.489326	bHLH_family.p2	BC043113|Tbc1d5|72238|TBC1 domain family, member 5	BC098328|Tbc1d5|72238|TBC1 domain family, member 5	AK033710|Tbc1d5|72238|TBC1 domain family, member 5
mm9_v1_chr10_+_60638341_60638497	0.48854	bHLH_family.p2	AJ249392|Tbata|65971|thymus, brain and testes associated	AK038284|Tbata|65971|thymus, brain and testes associated	AK088524|Tbata|65971|thymus, brain and testes associated	AY243459|Tbata|65971|thymus, brain and testes associated	AY243458|Tbata|65971|thymus, brain and testes associated
mm9_v1_chr11_+_87569075_87569079	0.486899	bHLH_family.p2	AK020764|A430104N18Rik|78591|RIKEN cDNA A430104N18 gene
mm9_v1_chr1_-_129998984_129999039	0.48263	bHLH_family.p2	BC066035|Zranb3|226409|zinc finger, RAN-binding domain containing 3	NM_027678|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK042139|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK083641|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK084943|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK085488|Zranb3|226409|zinc finger, RAN-binding domain containing 3
mm9_v1_chr10_+_21878374_21878474	0.482448	bHLH_family.p2	AK131854|Raet1e|379043|retinoic acid early transcript 1E	AB284505|H60b|667281|histocompatibility 60b	D64160|Raet1a|19368|retinoic acid early transcript 1, alpha	NM_009016|Raet1a|19368|retinoic acid early transcript 1, alpha	FJ594065|Raet1e|379043|retinoic acid early transcript 1E	FJ594067|Raet1e|379043|retinoic acid early transcript 1E	FJ594068|Raet1e|379043|retinoic acid early transcript 1E
mm9_v1_chr7_-_117009158_117009192	0.482231	bHLH_family.p2	AK142950|Scube2|56788|signal peptide, CUB domain, EGF-like 2	NM_020052|Scube2|56788|signal peptide, CUB domain, EGF-like 2
mm9_v1_chr7_+_31348317_31348374	0.482156	bHLH_family.p2	BC060972|U2af1l4|233073|U2 small nuclear RNA auxiliary factor 1-like 4	NM_170760|U2af1l4|233073|U2 small nuclear RNA auxiliary factor 1-like 4	BC051477|U2af1l4|233073|U2 small nuclear RNA auxiliary factor 1-like 4	AF419339|U2af1l4|233073|U2 small nuclear RNA auxiliary factor 1-like 4
mm9_v1_chr5_+_64203602_64203733	0.481059	bHLH_family.p2	AK050792|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	AK002869|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	NM_029554|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr3_+_129581477_129581610	0.480345	bHLH_family.p2	BC051117|Pla2g12a|66350|phospholipase A2, group XIIA	AK010011|Pla2g12a|66350|phospholipase A2, group XIIA	NM_023196|Pla2g12a|66350|phospholipase A2, group XIIA	AY007381|Pla2g12a|66350|phospholipase A2, group XIIA	AK010174|Pla2g12a|66350|phospholipase A2, group XIIA	BC026812|Pla2g12a|66350|phospholipase A2, group XIIA	AK003183|Pla2g12a|66350|phospholipase A2, group XIIA	AK012414|Pla2g12a|66350|phospholipase A2, group XIIA	AK163693|Pla2g12a|66350|phospholipase A2, group XIIA
mm9_v1_chr18_-_80348164_80348258	0.479637	bHLH_family.p2	AB093268|Adnp2|240442|ADNP homeobox 2	NM_175028|Adnp2|240442|ADNP homeobox 2
mm9_v1_chr11_-_45768992_45769003	0.478679	bHLH_family.p2	BC115560|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	BC115561|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	AK010876|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	NM_001080969|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm9_v1_chrX_+_54306724_54306791	0.478388	bHLH_family.p2	AK012522|Htatsf1|72459|HIV TAT specific factor 1	BC037711|Htatsf1|72459|HIV TAT specific factor 1	NM_028242|Htatsf1|72459|HIV TAT specific factor 1
mm9_v1_chr10_-_126778997_126779029	0.478183	bHLH_family.p2	AB234617|Gli1|14632|GLI-Kruppel family member GLI1
mm9_v1_chr4_-_129318200_129318260	0.47806	bHLH_family.p2	AK141252|Txlna|109658|taxilin alpha
mm9_v1_chr17_-_51318604_51318627	0.477846	bHLH_family.p2	AK163366|Tbc1d5|72238|TBC1 domain family, member 5	AK038013|Tbc1d5|72238|TBC1 domain family, member 5
mm9_v1_chr9_+_110235922_110235986	0.477145	bHLH_family.p2	AK035432|Scap|235623|SREBF chaperone
mm9_v1_chr7_+_52105323_52105411	0.476308	bHLH_family.p2	BC002180|Akt1s1|67605|AKT1 substrate 1 (proline-rich)
mm9_v1_chr10_+_61245998_61246044	0.476138	bHLH_family.p2	
mm9_v1_chr2_-_157972041_157972154	0.473677	bHLH_family.p2	AF076928|Tgm2|21817|transglutaminase 2, C polypeptide	M55154|Tgm2|21817|transglutaminase 2, C polypeptide	BC016492|Tgm2|21817|transglutaminase 2, C polypeptide	AF114266|Tgm2|21817|transglutaminase 2, C polypeptide	AK052912|Tgm2|21817|transglutaminase 2, C polypeptide	AK054108|Tgm2|21817|transglutaminase 2, C polypeptide	AK080593|Tgm2|21817|transglutaminase 2, C polypeptide	AK086001|Tgm2|21817|transglutaminase 2, C polypeptide	AK152152|Tgm2|21817|transglutaminase 2, C polypeptide	AK159255|Tgm2|21817|transglutaminase 2, C polypeptide	AK166302|Tgm2|21817|transglutaminase 2, C polypeptide	AK168990|Tgm2|21817|transglutaminase 2, C polypeptide	AK089481|Tgm2|21817|transglutaminase 2, C polypeptide	AK080224|Tgm2|21817|transglutaminase 2, C polypeptide	AK151776|Tgm2|21817|transglutaminase 2, C polypeptide	AK152627|Tgm2|21817|transglutaminase 2, C polypeptide	NM_009373|Tgm2|21817|transglutaminase 2, C polypeptide	AK169356|Tgm2|21817|transglutaminase 2, C polypeptide
mm9_v1_chr2_+_132641920_132642070	0.473645	bHLH_family.p2	AK012845|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK019268|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK133858|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC046780|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK017607|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC052070|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	NM_025676|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)
mm9_v1_chr12_-_42212538_42212554	0.473436	bHLH_family.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr4_-_45097427_45097496	0.473367	bHLH_family.p2	AK153358|Fbxo10|269529|F-box protein 10	BC054731|Fbxo10|269529|F-box protein 10	AK150292|Fbxo10|269529|F-box protein 10	AK142389|Fbxo10|269529|F-box protein 10	NM_001024142|Fbxo10|269529|F-box protein 10
mm9_v1_chr16_+_18877129_18877328	0.473137	bHLH_family.p2	BC052856|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	BC060181|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr14_-_52816830_52816940	0.473114	bHLH_family.p2	AK158116|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AK148506|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AF323667|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AK146529|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	NM_033618|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)	AK169561|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)
mm9_v1_chr4_-_133801438_133801522	0.472536	bHLH_family.p2	AK156931|Zfp593|68040|zinc finger protein 593	BC003465|Zfp593|68040|zinc finger protein 593	AK014081|Zfp593|68040|zinc finger protein 593	AK133585|Zfp593|68040|zinc finger protein 593	AK005247|Zfp593|68040|zinc finger protein 593	NM_024215|Zfp593|68040|zinc finger protein 593
mm9_v1_chr5_+_118695228_118695301	0.471269	bHLH_family.p2	NM_001081236|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	AK090380|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104372|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104373|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene
mm9_v1_chr5_-_135115175_135115219	0.470475	bHLH_family.p2	AK169312|Eif4h|22384|eukaryotic translation initiation factor 4H	AK149841|Eif4h|22384|eukaryotic translation initiation factor 4H	AK136999|Eif4h|22384|eukaryotic translation initiation factor 4H	AK135390|Eif4h|22384|eukaryotic translation initiation factor 4H	AK166567|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169353|Eif4h|22384|eukaryotic translation initiation factor 4H	NM_033561|Eif4h|22384|eukaryotic translation initiation factor 4H	AK045004|Eif4h|22384|eukaryotic translation initiation factor 4H	AK150088|Eif4h|22384|eukaryotic translation initiation factor 4H	BC014796|Eif4h|22384|eukaryotic translation initiation factor 4H	AK088818|Eif4h|22384|eukaryotic translation initiation factor 4H	AK168872|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169407|Eif4h|22384|eukaryotic translation initiation factor 4H	AK132034|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr6_-_145813859_145813899	0.469567	bHLH_family.p2	AB044090|Bhlhe41|79362|basic helix-loop-helix family, member e41	NM_024469|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC023231|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC051555|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC037742|Bhlhe41|79362|basic helix-loop-helix family, member e41
mm9_v1_chr4_+_151671335_151671430	0.46908	bHLH_family.p2	BC110695|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AK154135|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AK154410|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	BC057132|Icmt|57295|isoprenylcysteine carboxyl methyltransferase
mm9_v1_chr17_+_57388873_57388970	0.468681	bHLH_family.p2	NM_134125|Trip10|106628|thyroid hormone receptor interactor 10	BC003249|Trip10|106628|thyroid hormone receptor interactor 10	AK149902|Trip10|106628|thyroid hormone receptor interactor 10	AY081142|Trip10|106628|thyroid hormone receptor interactor 10	AK088909|Trip10|106628|thyroid hormone receptor interactor 10	AF502565|Trip10|106628|thyroid hormone receptor interactor 10
mm9_v1_chr7_-_129164546_129164728	0.468078	bHLH_family.p2	AK187372|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK129280|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	BC062933|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK004632|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK154904|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK143691|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK159953|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK149798|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	NM_028758|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm9_v1_chr19_-_5424856_5425071	0.467658	bHLH_family.p2	BC002090|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	NM_024176|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	AK010152|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr8_-_108231924_108232089	0.467136	bHLH_family.p2	AK087475|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC026993|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC018168|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC052498|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	NM_198299|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC023921|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene
mm9_v1_chr8_+_54597026_54597158	0.46702	bHLH_family.p2	NM_001005847|Aga|11593|aspartylglucosaminidase	BC132227|Aga|11593|aspartylglucosaminidase	BC132229|Aga|11593|aspartylglucosaminidase	BC145297|Aga|11593|aspartylglucosaminidase	S81393|Aga|11593|aspartylglucosaminidase	BC048230|Aga|11593|aspartylglucosaminidase
mm9_v1_chr4_+_153331341_153331408	0.466719	bHLH_family.p2	AK039812|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	BC052148|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_001163019|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_175287|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene
mm9_v1_chr2_-_17652725_17652774	0.466597	bHLH_family.p2	AK077837|Nebl|74103|nebulette
mm9_v1_chr11_+_35583304_35583391	0.465431	bHLH_family.p2	AK136305|Pank3|211347|pantothenate kinase 3	BC027089|Pank3|211347|pantothenate kinase 3
mm9_v1_chr9_-_106794234_106794259	0.465345	bHLH_family.p2	AB009291|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK165646|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK014338|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC038901|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr9_-_103267226_103267309	0.465095	bHLH_family.p2	AK172053|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC031362|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	NM_001134427|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AK048941|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr3_+_28680223_28680237	0.464159	bHLH_family.p2	AY205262|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205263|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205264|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205265|Eif5a2|208691|eukaryotic translation initiation factor 5A2	NM_177586|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK036127|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr4_-_131631226_131631229	0.464153	bHLH_family.p2	NM_001128607|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr2_-_92241357_92241532	0.463636	bHLH_family.p2	AF003115|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF054611|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	NM_011162|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr15_-_34424934_34424961	0.463615	bHLH_family.p2	BC092375|Hrsp12|15473|heat-responsive protein 12
mm9_v1_chr15_-_60656413_60656426	0.463236	bHLH_family.p2	BC020326|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr17_+_87153083_87153241	0.462865	bHLH_family.p2	AK136911|Epas1|13819|endothelial PAS domain protein 1	NM_010137|Epas1|13819|endothelial PAS domain protein 1	D89787|Epas1|13819|endothelial PAS domain protein 1
mm9_v1_chr11_+_29618696_29618843	0.462762	bHLH_family.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr4_-_86876328_86876443	0.462695	bHLH_family.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr8_+_121918768_121918845	0.462179	bHLH_family.p2	BC004764|Mlycd|56690|malonyl-CoA decarboxylase	NM_019966|Mlycd|56690|malonyl-CoA decarboxylase	AK171095|Mlycd|56690|malonyl-CoA decarboxylase	AK082479|Mlycd|56690|malonyl-CoA decarboxylase	AK051564|Mlycd|56690|malonyl-CoA decarboxylase
mm9_v1_chr11_+_70376359_70376411	0.46173	bHLH_family.p2	NM_001045959|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_001045964|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_016713|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_176893|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB035697|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB041925|Mink1|50932|misshapen-like kinase 1 (zebrafish)
mm9_v1_chr18_+_53335981_53336033	0.460954	bHLH_family.p2	AK005470|Snx2|67804|sorting nexin 2	AK002692|Snx2|67804|sorting nexin 2	BC006960|Snx2|67804|sorting nexin 2	NM_026386|Snx2|67804|sorting nexin 2	AK010572|Snx2|67804|sorting nexin 2	AK075929|Snx2|67804|sorting nexin 2	AK153525|Snx2|67804|sorting nexin 2	CT010229|Snx2|67804|sorting nexin 2
mm9_v1_chr18_+_69505374_69505487	0.46067	bHLH_family.p2	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr14_-_47006944_47006954	0.460362	bHLH_family.p2	BC052846|Bmp4|12159|bone morphogenetic protein 4
mm9_v1_chr8_-_42219037_42219129	0.459645	bHLH_family.p2	AK040710|Mtus1|102103|mitochondrial tumor suppressor 1	AK143781|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005863|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr15_+_81494364_81494367	0.459605	bHLH_family.p2	AK132012|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AK156236|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	NM_145993|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AK036510|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr17_+_26813327_26813409	0.459086	bHLH_family.p2	AK017760|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	NM_025272|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK159669|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK134836|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK007610|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK008464|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK168015|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	BC024733|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK013229|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK030335|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E
mm9_v1_chr18_+_61085283_61085301	0.45876	bHLH_family.p2	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr4_-_116494091_116494112	0.4587	bHLH_family.p2	AK049217|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	AK043902|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	AK078929|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like	NM_146256|Hpdl|242642|4-hydroxyphenylpyruvate dioxygenase-like
mm9_v1_chr11_+_98799013_98799173	0.458192	bHLH_family.p2	S56656|Rara|19401|retinoic acid receptor, alpha	BC040383|Rara|19401|retinoic acid receptor, alpha	NM_001177302|Rara|19401|retinoic acid receptor, alpha	AK154623|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr5_+_138187390_138187596	0.458076	bHLH_family.p2	AK143608|Tsc22d4|78829|TSC22 domain family, member 4	AK079510|Tsc22d4|78829|TSC22 domain family, member 4	AF201286|Tsc22d4|78829|TSC22 domain family, member 4	AK201891|Tsc22d4|78829|TSC22 domain family, member 4	AK154490|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chrX_+_90531783_90531984	0.458013	bHLH_family.p2	AB006103|Arx|11878|aristaless related homeobox	BC052033|Arx|11878|aristaless related homeobox	NM_007492|Arx|11878|aristaless related homeobox
mm9_v1_chr19_-_24299471_24299519	0.457808	bHLH_family.p2	NM_011597|Tjp2|21873|tight junction protein 2
mm9_v1_chr7_+_87343496_87343507	0.457358	bHLH_family.p2	DQ073331|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr4_-_40216818_40216897	0.456903	bHLH_family.p2	AB072395|Topors|106021|topoisomerase I binding, arginine/serine-rich	BC019421|Topors|106021|topoisomerase I binding, arginine/serine-rich	BC037141|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK044564|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK143025|Topors|106021|topoisomerase I binding, arginine/serine-rich	AB104865|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK153743|Topors|106021|topoisomerase I binding, arginine/serine-rich	BC040797|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK134075|Topors|106021|topoisomerase I binding, arginine/serine-rich	AK140250|Topors|106021|topoisomerase I binding, arginine/serine-rich	NM_134097|Topors|106021|topoisomerase I binding, arginine/serine-rich
mm9_v1_chr12_-_72237590_72237690	0.456797	bHLH_family.p2	AK012712|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK171071|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AF150101|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	BC028435|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	BC024370|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK018764|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK165848|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	NM_001024853|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	NM_001024854|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	NM_013896|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)	AK172179|Timm9|30056|translocase of inner mitochondrial membrane 9 homolog (yeast)
mm9_v1_chr8_+_32297803_32297858	0.455649	bHLH_family.p2	BC062113|Fut10|171167|fucosyltransferase 10	NM_134161|Fut10|171167|fucosyltransferase 10	BC030474|Fut10|171167|fucosyltransferase 10	AK083041|Fut10|171167|fucosyltransferase 10	AK147136|Fut10|171167|fucosyltransferase 10	NM_001012517|Fut10|171167|fucosyltransferase 10	AK169153|Fut10|171167|fucosyltransferase 10
mm9_v1_chr11_+_35582969_35582996	0.455643	bHLH_family.p2	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr5_-_123974130_123974185	0.455414	bHLH_family.p2	AF203914|Diablo|66593|diablo homolog (Drosophila)	AK002887|Diablo|66593|diablo homolog (Drosophila)	AK082903|Diablo|66593|diablo homolog (Drosophila)	AK169573|Diablo|66593|diablo homolog (Drosophila)	BC024780|Diablo|66593|diablo homolog (Drosophila)	AK077198|Diablo|66593|diablo homolog (Drosophila)	AK133194|Diablo|66593|diablo homolog (Drosophila)	BC054109|Diablo|66593|diablo homolog (Drosophila)	AK012760|Diablo|66593|diablo homolog (Drosophila)	NM_023232|Diablo|66593|diablo homolog (Drosophila)
mm9_v1_chr8_-_42459932_42460052	0.454504	bHLH_family.p2	AK150567|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK151312|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK152811|Asah1|11886|N-acylsphingosine amidohydrolase 1	BC003204|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK153297|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK075666|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK159556|Asah1|11886|N-acylsphingosine amidohydrolase 1	AF157500|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK166757|Asah1|11886|N-acylsphingosine amidohydrolase 1	AF352179|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK090314|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK075919|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK077721|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK152305|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK152920|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK153101|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK151478|Asah1|11886|N-acylsphingosine amidohydrolase 1	AK151208|Asah1|11886|N-acylsphingosine amidohydrolase 1	NM_019734|Asah1|11886|N-acylsphingosine amidohydrolase 1
mm9_v1_chr6_-_145024451_145024466	0.453691	bHLH_family.p2	AK012821|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr11_-_53841589_53841653	0.453087	bHLH_family.p2	AB016257|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4	BC010590|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4	NM_019687|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4	AK143595|Slc22a4|30805|solute carrier family 22 (organic cation transporter), member 4
mm9_v1_chr18_+_69504145_69504185	0.452948	bHLH_family.p2	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr8_+_73017009_73017206	0.45243	bHLH_family.p2	NM_018827|Crlf1|12931|cytokine receptor-like factor 1	AB040038|Crlf1|12931|cytokine receptor-like factor 1	BC107376|Crlf1|12931|cytokine receptor-like factor 1	BC107377|Crlf1|12931|cytokine receptor-like factor 1	BC114407|Crlf1|12931|cytokine receptor-like factor 1
mm9_v1_chr1_-_191746072_191746205	0.452144	bHLH_family.p2	AK197062|Smyd2|226830|SET and MYND domain containing 2	AK204951|Smyd2|226830|SET and MYND domain containing 2	AK164053|Smyd2|226830|SET and MYND domain containing 2	BC023119|Smyd2|226830|SET and MYND domain containing 2	NM_026796|Smyd2|226830|SET and MYND domain containing 2	AK145261|Smyd2|226830|SET and MYND domain containing 2	AK150857|Smyd2|226830|SET and MYND domain containing 2
mm9_v1_chr7_-_125849167_125849210	0.451451	bHLH_family.p2	AK186739|Gde1|56209|glycerophosphodiester phosphodiesterase 1	BC003902|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr16_-_96349292_96349333	0.45112	bHLH_family.p2	NM_008251|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr9_+_62525612_62525700	0.450133	bHLH_family.p2	NM_176922|Itga11|319480|integrin alpha 11	AK054303|Itga11|319480|integrin alpha 11	AY124460|Itga11|319480|integrin alpha 11	BC058716|Itga11|319480|integrin alpha 11
mm9_v1_chr9_+_120036883_120036892	0.449212	bHLH_family.p2	NM_011029|Rpsa|16785|ribosomal protein SA
mm9_v1_chr8_+_36650839_36650928	0.447856	bHLH_family.p2	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr18_+_35021288_35021413	0.447559	bHLH_family.p2	M19643|Egr1|13653|early growth response 1	AK133630|Egr1|13653|early growth response 1
mm9_v1_chr5_+_32438219_32438224	0.446486	bHLH_family.p2	AK089371|Fosl2|14284|fos-like antigen 2
mm9_v1_chrX_+_160346948_160347157	0.446111	bHLH_family.p2	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr11_-_88816679_88816773	0.445184	bHLH_family.p2	AK050181|Scpep1|74617|serine carboxypeptidase 1	AK153485|Scpep1|74617|serine carboxypeptidase 1	BC021399|Scpep1|74617|serine carboxypeptidase 1	AF330052|Scpep1|74617|serine carboxypeptidase 1	AK153225|Scpep1|74617|serine carboxypeptidase 1	BC004847|Scpep1|74617|serine carboxypeptidase 1	AK014680|Scpep1|74617|serine carboxypeptidase 1	NM_029023|Scpep1|74617|serine carboxypeptidase 1
mm9_v1_chr11_+_98209978_98210141	0.44416	bHLH_family.p2	BC026568|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	NM_144828|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	BC011122|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B
mm9_v1_chr4_+_101092307_101092393	0.444026	bHLH_family.p2	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr5_+_31357119_31357185	0.443317	bHLH_family.p2	BC053097|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	NM_023525|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC060119|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr11_+_79806552_79806633	0.44323	bHLH_family.p2	AK141264|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	BC064461|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_001163018|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_199196|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr17_-_65962616_65962686	0.442863	bHLH_family.p2	AF115503|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK012357|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr17_+_33961535_33961572	0.442706	bHLH_family.p2	AK002476|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	AK003468|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	BC055698|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	BC052817|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	NM_023202|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	AK010299|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)
mm9_v1_chr9_-_44607274_44607334	0.442207	bHLH_family.p2	AK090375|Tmem25|71687|transmembrane protein 25	AK165827|Tmem25|71687|transmembrane protein 25	AK002841|Tmem25|71687|transmembrane protein 25	NM_027865|Tmem25|71687|transmembrane protein 25	BC060057|Tmem25|71687|transmembrane protein 25	BC060243|Tmem25|71687|transmembrane protein 25	AK154206|Tmem25|71687|transmembrane protein 25	AK165199|Tmem25|71687|transmembrane protein 25
mm9_v1_chr2_-_28771940_28771959	0.442098	bHLH_family.p2	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr16_+_16213434_16213437	0.44174	bHLH_family.p2	AK004650|Pkp2|67451|plakophilin 2	AK004731|Pkp2|67451|plakophilin 2	AK049481|Pkp2|67451|plakophilin 2	AK162000|Pkp2|67451|plakophilin 2	AK167660|Pkp2|67451|plakophilin 2	BC138252|Pkp2|67451|plakophilin 2	BC138253|Pkp2|67451|plakophilin 2	NM_026163|Pkp2|67451|plakophilin 2
mm9_v1_chr11_-_70034272_70034332	0.441699	bHLH_family.p2	BC039949|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm9_v1_chr12_+_3426820_3426856	0.440113	bHLH_family.p2	AK148015|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr1_-_89406861_89406998	0.439837	bHLH_family.p2	AK138433|Ngef|53972|neuronal guanine nucleotide exchange factor	AY038025|Ngef|53972|neuronal guanine nucleotide exchange factor	AJ238898|Ngef|53972|neuronal guanine nucleotide exchange factor	NM_019867|Ngef|53972|neuronal guanine nucleotide exchange factor
mm9_v1_chr16_-_32079317_32079415	0.439826	bHLH_family.p2	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr12_-_70298068_70298133	0.439822	bHLH_family.p2	AK075648|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	AK172494|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	EU599049|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	AK012767|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	BC058344|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene	AK154254|1110034A24Rik|109065|RIKEN cDNA 1110034A24 gene
mm9_v1_chr16_+_31664022_31664124	0.439421	bHLH_family.p2	AK220189|Dlg1|13383|discs, large homolog 1 (Drosophila)	BC057118|Dlg1|13383|discs, large homolog 1 (Drosophila)	NM_007862|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr9_+_53149188_53149418	0.439025	bHLH_family.p2	AK046924|Exph5|320051|exophilin 5	AK044881|Exph5|320051|exophilin 5
mm9_v1_chr5_-_77380593_77380602	0.43853	bHLH_family.p2	AK159141|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK159859|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	NM_172146|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr10_+_75356142_75356192	0.438518	bHLH_family.p2	AB047555|Derl3|70377|Der1-like domain family, member 3	NM_024440|Derl3|70377|Der1-like domain family, member 3	BC115466|Derl3|70377|Der1-like domain family, member 3	BC115467|Derl3|70377|Der1-like domain family, member 3	AK172429|Derl3|70377|Der1-like domain family, member 3	BC099615|Derl3|70377|Der1-like domain family, member 3	AK007348|Derl3|70377|Der1-like domain family, member 3	AK007948|Derl3|70377|Der1-like domain family, member 3	BC019815|Derl3|70377|Der1-like domain family, member 3	BC004729|Derl3|70377|Der1-like domain family, member 3
mm9_v1_chr16_+_38902552_38902620	0.438479	bHLH_family.p2	AB079880|Igsf11|207683|immunoglobulin superfamily, member 11
mm9_v1_chr11_+_3190334_3190510	0.437788	bHLH_family.p2	AK166189|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	BC043035|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	AB029397|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	NM_019574|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1
mm9_v1_chr9_-_114753191_114753285	0.43659	bHLH_family.p2	BC027554|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK012262|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	NM_027294|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK137729|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK161079|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8
mm9_v1_chr9_-_78329444_78329551	0.43636	bHLH_family.p2	BC092053|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC095965|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC108391|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC018223|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC018485|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	BC083069|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	M22432|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK162313|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166615|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK167873|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK032914|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK050635|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK151479|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK162440|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK164113|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK168467|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK003188|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK011771|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK012341|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK076696|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK081725|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK083361|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK088041|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK133725|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK135448|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK137223|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK141243|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK150798|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK151773|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK152810|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK152993|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK153387|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK153402|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK153851|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK162049|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK163799|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK164671|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK165938|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166021|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166033|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166058|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166089|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK166807|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK167843|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	AK168424|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1	NM_010106|Eef1a1|13627|eukaryotic translation elongation factor 1 alpha 1
mm9_v1_chr1_-_165242552_165242739	0.436252	bHLH_family.p2	AK165914|Prrx1|18933|paired related homeobox 1	AK019503|Prrx1|18933|paired related homeobox 1
mm9_v1_chr1_+_180117815_180117840	0.435998	bHLH_family.p2	AK146492|Pppde1|78825|PPPDE peptidase domain containing 1	BC046816|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr15_+_84753817_84753857	0.435975	bHLH_family.p2	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr12_+_114252715_114252763	0.435851	bHLH_family.p2	NM_001081170|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK036581|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK054000|Pacs2|217893|phosphofurin acidic cluster sorting protein 2
mm9_v1_chr6_-_22305957_22306034	0.434747	bHLH_family.p2	AK081394|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr1_-_163181313_163181346	0.434367	bHLH_family.p2	AK157820|Prdx6|11758|peroxiredoxin 6	Y12883|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr7_-_134404120_134404235	0.433398	bHLH_family.p2	AK010606|Dctpp1|66422|dCTP pyrophosphatase 1	AK003643|Dctpp1|66422|dCTP pyrophosphatase 1	AK010508|Dctpp1|66422|dCTP pyrophosphatase 1	AF110764|Dctpp1|66422|dCTP pyrophosphatase 1	NM_023203|Dctpp1|66422|dCTP pyrophosphatase 1	BC004623|Dctpp1|66422|dCTP pyrophosphatase 1
mm9_v1_chr7_+_63097598_63097661	0.433325	bHLH_family.p2	AK220320|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK167068|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK044175|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK152558|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK146613|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AF072697|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	BC047135|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK128952|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK157773|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr14_+_69955194_69955282	0.432149	bHLH_family.p2	NM_026174|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK045342|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK004761|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK042053|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC052090|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC043134|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4
mm9_v1_chr6_+_72047758_72047839	0.432105	bHLH_family.p2	AK158594|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	Y15003|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm9_v1_chr4_+_148478321_148478359	0.431328	bHLH_family.p2	AK051011|Dffa|13347|DNA fragmentation factor, alpha subunit	AB009375|Dffa|13347|DNA fragmentation factor, alpha subunit	AB009376|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr4_-_82150687_82150887	0.430145	bHLH_family.p2	AY035852|Nfib|18028|nuclear factor I/B	AY035853|Nfib|18028|nuclear factor I/B	BC014290|Nfib|18028|nuclear factor I/B	BC023366|Nfib|18028|nuclear factor I/B	U57634|Nfib|18028|nuclear factor I/B
mm9_v1_chr19_-_5609896_5610062	0.430006	bHLH_family.p2	AK195015|Kat5|81601|K(lysine) acetyltransferase 5	AK159568|Kat5|81601|K(lysine) acetyltransferase 5	AK160077|Kat5|81601|K(lysine) acetyltransferase 5	BC129967|Kat5|81601|K(lysine) acetyltransferase 5	AF528195|Kat5|81601|K(lysine) acetyltransferase 5	AF528196|Kat5|81601|K(lysine) acetyltransferase 5	BC129968|Kat5|81601|K(lysine) acetyltransferase 5	DQ139980|Kat5|81601|K(lysine) acetyltransferase 5	NM_178637|Kat5|81601|K(lysine) acetyltransferase 5	BC110675|Kat5|81601|K(lysine) acetyltransferase 5	AK143674|Kat5|81601|K(lysine) acetyltransferase 5	AK146352|Kat5|81601|K(lysine) acetyltransferase 5
mm9_v1_chr8_-_13974679_13974776	0.429922	bHLH_family.p2	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chr3_-_36374562_36374570	0.429875	bHLH_family.p2	U29396|Anxa5|11747|annexin A5
mm9_v1_chr6_+_133985988_133986050	0.429695	bHLH_family.p2	AK078773|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK035231|Etv6|14011|ets variant gene 6 (TEL oncogene)	BC052163|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK157265|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr7_+_89484203_89484257	0.429491	bHLH_family.p2	NM_001190374|Adamtsl3|269959|ADAMTS-like 3
mm9_v1_chr11_+_103032358_103032714	0.429143	bHLH_family.p2	NM_001077698|Fmnl1|57778|formin-like 1	NM_019679|Fmnl1|57778|formin-like 1	AF215666|Fmnl1|57778|formin-like 1	AF006466|Fmnl1|57778|formin-like 1
mm9_v1_chr4_-_43044241_43044275	0.428676	bHLH_family.p2	AK002793|Stoml2|66592|stomatin (Epb7.2)-like 2	BC069941|Stoml2|66592|stomatin (Epb7.2)-like 2	BC003425|Stoml2|66592|stomatin (Epb7.2)-like 2	NM_023231|Stoml2|66592|stomatin (Epb7.2)-like 2	AF323178|Stoml2|66592|stomatin (Epb7.2)-like 2
mm9_v1_chr19_-_41459518_41459628	0.428258	bHLH_family.p2	BC113141|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AF293806|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	NM_031376|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK087295|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK154326|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK171021|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK170130|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK170925|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK089785|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1
mm9_v1_chr16_+_20672854_20672888	0.427324	bHLH_family.p2	AK053144|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK142399|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK133903|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK139371|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK162698|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066038|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr11_-_69734574_69734597	0.427136	bHLH_family.p2	NM_001166596|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr6_-_137597719_137597737	0.426464	bHLH_family.p2	AK148424|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr11_-_29415005_29415037	0.426271	bHLH_family.p2	BC033930|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK085965|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK019442|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK077280|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	AK008574|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	BC115900|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	NM_001163454|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1	NM_026465|Prorsd1|67939|prolyl-tRNA synthetase domain containing 1
mm9_v1_chr9_-_13631343_13631398	0.426211	bHLH_family.p2	AY225093|Cep57|74360|centrosomal protein 57	AK028458|Cep57|74360|centrosomal protein 57	AK028408|Cep57|74360|centrosomal protein 57
mm9_v1_chr11_-_118216625_118216642	0.425911	bHLH_family.p2	AK032818|Timp2|21858|tissue inhibitor of metalloproteinase 2	AK144236|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chrX_+_71558358_71558460	0.425185	bHLH_family.p2	AK008402|Fam50a|108160|family with sequence similarity 50, member A	NM_138607|Fam50a|108160|family with sequence similarity 50, member A	Y18505|Fam50a|108160|family with sequence similarity 50, member A	BC125297|Fam50a|108160|family with sequence similarity 50, member A	BC026128|Fam50a|108160|family with sequence similarity 50, member A
mm9_v1_chr4_-_119212968_119213006	0.425019	bHLH_family.p2	AK086686|AA415398|433752|expressed sequence AA415398
mm9_v1_chr1_+_78306890_78306952	0.42431	bHLH_family.p2	BC049995|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2	NM_001004173|Sgpp2|433323|sphingosine-1-phosphate phosphotase 2
mm9_v1_chr1_-_95375363_95375369	0.422178	bHLH_family.p2	BC023806|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr9_-_66891535_66891699	0.4221	bHLH_family.p2	NM_001164252|Tpm1|22003|tropomyosin 1, alpha	NM_001164253|Tpm1|22003|tropomyosin 1, alpha	NM_001164254|Tpm1|22003|tropomyosin 1, alpha	NM_001164256|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr11_-_115569814_115569935	0.421741	bHLH_family.p2	AK155800|Grb2|14784|growth factor receptor bound protein 2	AK166142|Grb2|14784|growth factor receptor bound protein 2	AK148148|Grb2|14784|growth factor receptor bound protein 2	AK172002|Grb2|14784|growth factor receptor bound protein 2	BC052377|Grb2|14784|growth factor receptor bound protein 2	NM_008163|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr1_-_135817945_135817982	0.421725	bHLH_family.p2	AK037150|Prelp|116847|proline arginine-rich end leucine-rich repeat	BC019775|Prelp|116847|proline arginine-rich end leucine-rich repeat	AK047480|Prelp|116847|proline arginine-rich end leucine-rich repeat	NM_054077|Prelp|116847|proline arginine-rich end leucine-rich repeat
mm9_v1_chr18_+_14941735_14941757	0.421607	bHLH_family.p2	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr5_-_139470895_139470908	0.421055	bHLH_family.p2	AY324648|Pdgfa|18590|platelet derived growth factor, alpha	BC003817|Pdgfa|18590|platelet derived growth factor, alpha	NM_008808|Pdgfa|18590|platelet derived growth factor, alpha
mm9_v1_chr15_+_41620484_41620584	0.420075	bHLH_family.p2	NM_001130165|Oxr1|170719|oxidation resistance 1	BC089183|Oxr1|170719|oxidation resistance 1
mm9_v1_chr4_-_133101802_133101911	0.419465	bHLH_family.p2	Y15522|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	X81443|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	BC011253|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012777|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK032673|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012321|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK146323|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr3_-_68848588_68848638	0.419433	bHLH_family.p2	BC025430|Trim59|66949|tripartite motif-containing 59	BC006700|Trim59|66949|tripartite motif-containing 59	AK016642|Trim59|66949|tripartite motif-containing 59
mm9_v1_chr7_-_133646767_133646989	0.418425	bHLH_family.p2	BC054483|Atxn2l|233871|ataxin 2-like	NM_183020|Atxn2l|233871|ataxin 2-like	AK155062|Atxn2l|233871|ataxin 2-like	AK084800|Atxn2l|233871|ataxin 2-like
mm9_v1_chr5_+_144383313_144383461	0.417875	bHLH_family.p2	NM_011182|Cyth3|19159|cytohesin 3	AK142407|Cyth3|19159|cytohesin 3	AK220565|Cyth3|19159|cytohesin 3	AK159229|Cyth3|19159|cytohesin 3	BC035296|Cyth3|19159|cytohesin 3	AK036191|Cyth3|19159|cytohesin 3	AK168566|Cyth3|19159|cytohesin 3	AF084221|Cyth3|19159|cytohesin 3	AB013470|Cyth3|19159|cytohesin 3
mm9_v1_chr15_-_81222718_81222746	0.417012	bHLH_family.p2	AK205921|St13|70356|suppression of tumorigenicity 13
mm9_v1_chr19_-_6984541_6984611	0.416873	bHLH_family.p2	AK009858|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr13_+_93381078_93381085	0.416345	bHLH_family.p2	AK054475|Serinc5|218442|serine incorporator 5
mm9_v1_chr11_-_119216770_119216851	0.4163	bHLH_family.p2	AK141266|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AF153827|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AF304053|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AF304054|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	BC130268|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK034220|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK052266|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK128926|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	NM_018822|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)	AK076267|Sgsh|27029|N-sulfoglucosamine sulfohydrolase (sulfamidase)
mm9_v1_chr2_+_84679564_84679595	0.416124	bHLH_family.p2	NM_001081349|Slc43a1|72401|solute carrier family 43, member 1	AK011417|Slc43a1|72401|solute carrier family 43, member 1	AK046758|Slc43a1|72401|solute carrier family 43, member 1	AK165374|Slc43a1|72401|solute carrier family 43, member 1	AB103034|Slc43a1|72401|solute carrier family 43, member 1
mm9_v1_chr7_-_133942605_133942705	0.416114	bHLH_family.p2	Y00516|Aldoa|11674|aldolase A, fructose-bisphosphate	BC043026|Aldoa|11674|aldolase A, fructose-bisphosphate	EF662060|Aldoa|11674|aldolase A, fructose-bisphosphate	AK145639|Aldoa|11674|aldolase A, fructose-bisphosphate	AK002561|Aldoa|11674|aldolase A, fructose-bisphosphate	AK162290|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066218|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066801|Aldoa|11674|aldolase A, fructose-bisphosphate	BC050896|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177307|Aldoa|11674|aldolase A, fructose-bisphosphate	BC089495|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr18_-_84855007_84855083	0.41596	bHLH_family.p2	AB046738|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK003779|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK151013|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK172034|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK159739|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	BC005532|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	NM_023149|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK168029|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)	AK168652|Cndp2|66054|CNDP dipeptidase 2 (metallopeptidase M20 family)
mm9_v1_chr11_+_101329457_101329578	0.415466	bHLH_family.p2	BC139330|Rnd2|11858|Rho family GTPase 2	BC139331|Rnd2|11858|Rho family GTPase 2
mm9_v1_chr15_-_75900118_75900213	0.415393	bHLH_family.p2	BC060689|Scrib|105782|scribbled homolog (Drosophila)	BC062888|Scrib|105782|scribbled homolog (Drosophila)	AF441233|Scrib|105782|scribbled homolog (Drosophila)	NM_134089|Scrib|105782|scribbled homolog (Drosophila)	AK122211|Scrib|105782|scribbled homolog (Drosophila)
mm9_v1_chr19_+_37282150_37282364	0.415315	bHLH_family.p2	AK007511|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132455|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132457|March5|69104|membrane-associated ring finger (C3HC4) 5	BC064752|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107215|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107214|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr3_+_28680248_28680315	0.413795	bHLH_family.p2	AK052412|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106843|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106844|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK082214|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr16_-_17891608_17891820	0.413559	bHLH_family.p2	AK153026|Dgcr2|13356|DiGeorge syndrome critical region gene 2	X95480|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC062978|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK145495|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK042786|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK161022|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163903|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK088131|Dgcr2|13356|DiGeorge syndrome critical region gene 2	D78641|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC060636|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163872|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK141594|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_001109750|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_010048|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr17_-_12511525_12511663	0.413214	bHLH_family.p2	BC058719|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	NM_011948|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	U85607|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	U85608|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK014185|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK035823|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4	AK133605|Map3k4|26407|mitogen-activated protein kinase kinase kinase 4
mm9_v1_chr13_-_54789548_54789560	0.412368	bHLH_family.p2	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr17_-_46889082_46889212	0.411879	bHLH_family.p2	AK086940|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK143428|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK010702|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK005532|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK049358|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK141306|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK082340|Cnpy3|72029|canopy 3 homolog (zebrafish)	AF361644|Cnpy3|72029|canopy 3 homolog (zebrafish)	BC013549|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK085617|Cnpy3|72029|canopy 3 homolog (zebrafish)	NM_028065|Cnpy3|72029|canopy 3 homolog (zebrafish)
mm9_v1_chr2_+_17976897_17976897	0.411743	bHLH_family.p2	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr15_-_9070066_9070213	0.411459	bHLH_family.p2	AF083215|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK204645|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC003468|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC092236|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK167677|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK037002|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK044212|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK166034|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK032979|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC098371|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_013787|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_145468|Skp2|27401|S-phase kinase-associated protein 2 (p45)
mm9_v1_chr6_-_145024596_145024703	0.410048	bHLH_family.p2	BC053706|Bcat1|12035|branched chain aminotransferase 1, cytosolic	X17502|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK167232|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK166971|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_007532|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK168249|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr10_-_126725826_126725958	0.408886	bHLH_family.p2	BC059015|Mbd6|110962|methyl-CpG binding domain protein 6	NM_033072|Mbd6|110962|methyl-CpG binding domain protein 6	AK158797|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr5_-_100407613_100407631	0.40854	bHLH_family.p2	BC011172|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr1_+_173367685_173367771	0.404663	bHLH_family.p2	AK033574|F11r|16456|F11 receptor	NM_172647|F11r|16456|F11 receptor	BC021876|F11r|16456|F11 receptor	CT010347|F11r|16456|F11 receptor
mm9_v1_chr12_+_35731853_35731876	0.404024	bHLH_family.p2	AK154425|Snx13|217463|sorting nexin 13	NM_001014973|Snx13|217463|sorting nexin 13	AK166180|Snx13|217463|sorting nexin 13	BC067201|Snx13|217463|sorting nexin 13
mm9_v1_chr10_-_6373309_6373324	0.403178	bHLH_family.p2	BC058265|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr8_+_47556503_47556548	0.40189	bHLH_family.p2	AK149406|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK152772|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK168078|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK004897|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	BC056644|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr9_+_120213190_120213236	0.401832	bHLH_family.p2	AK083225|Myrip|245049|myosin VIIA and Rab interacting protein	NM_144557|Myrip|245049|myosin VIIA and Rab interacting protein	AK038988|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr7_+_107307748_107307807	0.40139	bHLH_family.p2	AK011925|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115472|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	NM_026010|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	BC115473|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK008917|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)	AK013127|Lipt2|67164|lipoyl(octanoyl) transferase 2 (putative)
mm9_v1_chr18_+_23468655_23468725	0.399966	bHLH_family.p2	X95227|Dtna|13527|dystrobrevin alpha
mm9_v1_chr10_-_80729645_80729680	0.399954	bHLH_family.p2	AK009657|Mrpl54|66047|mitochondrial ribosomal protein L54	BC056985|Mrpl54|66047|mitochondrial ribosomal protein L54	AK002348|Mrpl54|66047|mitochondrial ribosomal protein L54	AK003225|Mrpl54|66047|mitochondrial ribosomal protein L54	NM_025317|Mrpl54|66047|mitochondrial ribosomal protein L54
mm9_v1_chr11_-_58996318_58996331	0.399905	bHLH_family.p2	AK046421|Gjc2|118454|gap junction protein, gamma 2	NM_175452|Gjc2|118454|gap junction protein, gamma 2
mm9_v1_chr9_-_41932371_41932387	0.399754	bHLH_family.p2	AK147303|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing	NM_011436|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr2_+_144194646_144194805	0.399477	bHLH_family.p2	NM_001164813|Pet117|100048644|cytochrome c oxidase assembly factor-like	BC033464|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_001166640|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	BC031563|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_181417|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein
mm9_v1_chr7_-_26154721_26154745	0.398008	bHLH_family.p2	BC059093|Cnfn|72383|cornifelin	AK008979|Cnfn|72383|cornifelin	NM_001081375|Cnfn|72383|cornifelin	NM_028219|Cnfn|72383|cornifelin
mm9_v1_chr5_+_142877515_142877558	0.396945	bHLH_family.p2	AK144418|Foxk1|17425|forkhead box K1
mm9_v1_chr11_-_82721859_82721896	0.396372	bHLH_family.p2	BC018399|Nle1|217011|notchless homolog 1 (Drosophila)	BC035421|Nle1|217011|notchless homolog 1 (Drosophila)	AK170853|Nle1|217011|notchless homolog 1 (Drosophila)	AK141230|Nle1|217011|notchless homolog 1 (Drosophila)	NM_145431|Nle1|217011|notchless homolog 1 (Drosophila)
mm9_v1_chr16_-_31081444_31081521	0.395759	bHLH_family.p2	BC031419|AI480653|268880|expressed sequence AI480653	AK166259|AI480653|268880|expressed sequence AI480653	AK154256|AI480653|268880|expressed sequence AI480653	NM_198626|AI480653|268880|expressed sequence AI480653
mm9_v1_chr12_+_17551678_17551699	0.395742	bHLH_family.p2	NM_013614|Odc1|18263|ornithine decarboxylase, structural 1
mm9_v1_chr8_+_46593141_46593271	0.395645	bHLH_family.p2	AK171632|Sorbs2|234214|sorbin and SH3 domain containing 2	NM_172752|Sorbs2|234214|sorbin and SH3 domain containing 2	AK139388|Sorbs2|234214|sorbin and SH3 domain containing 2	BC151038|Sorbs2|234214|sorbin and SH3 domain containing 2	BC172140|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr12_+_112916302_112916387	0.395469	bHLH_family.p2	NM_001099792|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	NM_001099793|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	NM_177374|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	AK133579|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	AK049138|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	AK032824|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)	BC051186|Trmt61a|328162|tRNA methyltransferase 61 homolog A (S. cerevisiae)
mm9_v1_chr7_-_109398578_109398649	0.394471	bHLH_family.p2	EF524070|Rhog|56212|ras homolog gene family, member G	BC059775|Rhog|56212|ras homolog gene family, member G	AK169853|Rhog|56212|ras homolog gene family, member G	AK143623|Rhog|56212|ras homolog gene family, member G	AK149848|Rhog|56212|ras homolog gene family, member G	NM_019566|Rhog|56212|ras homolog gene family, member G
mm9_v1_chr8_+_96738490_96738507	0.394247	bHLH_family.p2	AK010450|Nup93|71805|nucleoporin 93	AK167105|Nup93|71805|nucleoporin 93	AK028864|Nup93|71805|nucleoporin 93	NM_172410|Nup93|71805|nucleoporin 93	BC023140|Nup93|71805|nucleoporin 93
mm9_v1_chr1_-_79668530_79668546	0.394103	bHLH_family.p2	AK028013|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	BC054111|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	BC098237|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3	NM_183027|Ap1s3|252903|adaptor-related protein complex AP-1, sigma 3
mm9_v1_chr4_-_109337891_109337976	0.393323	bHLH_family.p2	AK003933|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	BC027026|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	NM_007671|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
mm9_v1_chr17_+_47873941_47874206	0.393283	bHLH_family.p2	NM_001161722|Tcfeb|21425|transcription factor EB	AK078755|Tcfeb|21425|transcription factor EB
mm9_v1_chr17_+_25854439_25854493	0.392862	bHLH_family.p2	AB030194|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC048431|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC059712|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13
mm9_v1_chr5_+_116081897_116082155	0.39208	bHLH_family.p2	BC056466|Rab35|77407|RAB35, member RAS oncogene family	NM_198163|Rab35|77407|RAB35, member RAS oncogene family	AK156576|Rab35|77407|RAB35, member RAS oncogene family	AB232631|Rab35|77407|RAB35, member RAS oncogene family
mm9_v1_chr15_+_10644590_10644632	0.391853	bHLH_family.p2	AK030258|4930556M19Rik|75259|RIKEN cDNA 4930556M19 gene	AK016150|4930556M19Rik|75259|RIKEN cDNA 4930556M19 gene	AK005793|4930556M19Rik|75259|RIKEN cDNA 4930556M19 gene
mm9_v1_chr19_-_40439627_40439647	0.39176	bHLH_family.p2	
mm9_v1_chr2_+_29917543_29917687	0.391401	bHLH_family.p2	BC018255|Set|56086|SET nuclear oncogene	NM_023871|Set|56086|SET nuclear oncogene	AB044937|Set|56086|SET nuclear oncogene	AK011630|Set|56086|SET nuclear oncogene	BC103791|Set|56086|SET nuclear oncogene
mm9_v1_chr10_-_20880559_20880789	0.391315	bHLH_family.p2	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr16_+_38902431_38902466	0.390889	bHLH_family.p2	BC057555|Igsf11|207683|immunoglobulin superfamily, member 11	NM_170599|Igsf11|207683|immunoglobulin superfamily, member 11
mm9_v1_chr5_-_125821251_125821395	0.390197	bHLH_family.p2	CT010222|Scarb1|20778|scavenger receptor class B, member 1	U37799|Scarb1|20778|scavenger receptor class B, member 1	AK158122|Scarb1|20778|scavenger receptor class B, member 1	AK010622|Scarb1|20778|scavenger receptor class B, member 1	AK033114|Scarb1|20778|scavenger receptor class B, member 1	AK145588|Scarb1|20778|scavenger receptor class B, member 1
mm9_v1_chr6_+_81991613_81991706	0.389505	bHLH_family.p2	AK145140|Fam176a|232146|family with sequence similarity 176, member A	NM_145570|Fam176a|232146|family with sequence similarity 176, member A	BC027150|Fam176a|232146|family with sequence similarity 176, member A	AK166504|Fam176a|232146|family with sequence similarity 176, member A	BC014699|Fam176a|232146|family with sequence similarity 176, member A
mm9_v1_chr17_+_35516558_35516583	0.389186	bHLH_family.p2	AK037574|H2-Gs10|436493|MHC class I like protein GS10	AK136497|H2-Gs10|436493|MHC class I like protein GS10	NM_001143689|H2-Gs10|436493|MHC class I like protein GS10	BC010602|H2-Gs10|436493|MHC class I like protein GS10
mm9_v1_chr18_+_74938827_74938895	0.388008	bHLH_family.p2	AK146007|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK050101|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK167567|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK169359|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	NM_177470|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK167715|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK002555|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	BC028901|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)
mm9_v1_chr11_+_3189157_3189283	0.387855	bHLH_family.p2	AK018372|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1	BC055947|Patz1|56218|POZ (BTB) and AT hook containing zinc finger 1
mm9_v1_chr7_-_82453216_82453273	0.387335	bHLH_family.p2	AK147261|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_001109753|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr8_+_125626249_125626348	0.386657	bHLH_family.p2	NM_016738|Rpl13|270106|ribosomal protein L13	AK003487|Rpl13|270106|ribosomal protein L13	AK010989|Rpl13|270106|ribosomal protein L13	AK002787|Rpl13|270106|ribosomal protein L13	U28917|Rpl13|270106|ribosomal protein L13	BC085493|Rpl13|270106|ribosomal protein L13	BC034449|Rpl13|270106|ribosomal protein L13	BC055358|Rpl13|270106|ribosomal protein L13
mm9_v1_chr8_+_11556495_11556521	0.386143	bHLH_family.p2	BC016573|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr9_+_108462759_108462899	0.386083	bHLH_family.p2	AK169129|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK169788|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK146362|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK151706|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK166667|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	M33934|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK002676|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK011777|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK143505|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK150713|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK151233|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK152691|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK160569|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK159822|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	BC052671|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	BC010314|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	NM_011830|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	M98333|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2
mm9_v1_chr19_+_25311691_25311752	0.385955	bHLH_family.p2	AK041011|Kank1|107351|KN motif and ankyrin repeat domains 1	NM_181404|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr4_+_132091510_132091524	0.385628	bHLH_family.p2	BC035539|Dnajc8|68598|DnaJ (Hsp40) homolog, subfamily C, member 8
mm9_v1_chr11_-_30098163_30098286	0.384926	bHLH_family.p2	AF017112|Spnb2|20742|spectrin beta 2	AF016040|Spnb2|20742|spectrin beta 2	AK079842|Spnb2|20742|spectrin beta 2	AK157727|Spnb2|20742|spectrin beta 2	AK169544|Spnb2|20742|spectrin beta 2	NM_009260|Spnb2|20742|spectrin beta 2
mm9_v1_chr8_+_73223681_73223719	0.384793	bHLH_family.p2	AK196038|Jund|16478|Jun proto-oncogene related gene d
mm9_v1_chr7_-_125848966_125849043	0.384793	bHLH_family.p2	
mm9_v1_chr4_+_126872429_126872476	0.383443	bHLH_family.p2	BC058433|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chrX_+_162676903_162676907	0.382095	bHLH_family.p2	AF254871|Gpm6b|14758|glycoprotein m6b	AF254876|Gpm6b|14758|glycoprotein m6b	AF254877|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr8_+_87213145_87213176	0.381125	bHLH_family.p2	NM_001164559|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	NM_001164560|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	NM_198020|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)	BC027404|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr7_-_36587975_36588025	0.380791	bHLH_family.p2	AK129283|Zfp507|668501|zinc finger protein 507	BC050041|Zfp507|668501|zinc finger protein 507	AK142141|Zfp507|668501|zinc finger protein 507	NM_177739|Zfp507|668501|zinc finger protein 507	AK172290|E130304I02Rik|78547|RIKEN cDNA E130304I02 gene
mm9_v1_chr17_-_35325354_35325410	0.380479	bHLH_family.p2	U72643|Lst1|16988|leukocyte specific transcript 1	U72644|Lst1|16988|leukocyte specific transcript 1	AF000428|Lst1|16988|leukocyte specific transcript 1	BC086881|Lst1|16988|leukocyte specific transcript 1	M18187|Lst1|16988|leukocyte specific transcript 1	NM_010734|Lst1|16988|leukocyte specific transcript 1	AF000427|Lst1|16988|leukocyte specific transcript 1
mm9_v1_chr4_-_43536296_43536373	0.380197	bHLH_family.p2	X58381|Tpm2|22004|tropomyosin 2, beta	BC014809|Tpm2|22004|tropomyosin 2, beta	M87635|Tpm2|22004|tropomyosin 2, beta	X12650|Tpm2|22004|tropomyosin 2, beta	BC024358|Tpm2|22004|tropomyosin 2, beta	AK003186|Tpm2|22004|tropomyosin 2, beta	AK132162|Tpm2|22004|tropomyosin 2, beta
mm9_v1_chr5_+_110715337_110715402	0.380105	bHLH_family.p2	NM_011132|Pole|18973|polymerase (DNA directed), epsilon	AK165879|Pole|18973|polymerase (DNA directed), epsilon	AF123502|Pole|18973|polymerase (DNA directed), epsilon	AK141674|Pole|18973|polymerase (DNA directed), epsilon	BC048166|Pole|18973|polymerase (DNA directed), epsilon	BC063246|Pole|18973|polymerase (DNA directed), epsilon
mm9_v1_chr5_+_92391921_92391932	0.379944	bHLH_family.p2	AK039179|Thap6|381650|THAP domain containing 6	AK080650|Thap6|381650|THAP domain containing 6
mm9_v1_chr18_+_35278553_35278581	0.379761	bHLH_family.p2	NM_009818|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	X59990|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK148496|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC060174|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC068316|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	D90362|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC048163|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr5_-_125821418_125821488	0.379364	bHLH_family.p2	AK169906|Scarb1|20778|scavenger receptor class B, member 1	AK171602|Scarb1|20778|scavenger receptor class B, member 1	BC004656|Scarb1|20778|scavenger receptor class B, member 1	NM_016741|Scarb1|20778|scavenger receptor class B, member 1	AK028191|Scarb1|20778|scavenger receptor class B, member 1	AK154933|Scarb1|20778|scavenger receptor class B, member 1
mm9_v1_chr9_-_89517823_89517962	0.379291	bHLH_family.p2	AF529169|AF529169|209743|cDNA sequence AF529169	NM_153509|AF529169|209743|cDNA sequence AF529169	AK035830|AF529169|209743|cDNA sequence AF529169
mm9_v1_chr10_-_77927652_77927763	0.378736	bHLH_family.p2	BC032171|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK145470|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166464|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK080846|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK039194|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	AK166078|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	NM_172134|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase	BC027745|Pdxk|216134|pyridoxal (pyridoxine, vitamin B6) kinase
mm9_v1_chr5_+_138696988_138697037	0.378591	bHLH_family.p2	AK003250|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene	AK146994|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene
mm9_v1_chr17_-_57170896_57170957	0.378456	bHLH_family.p2	AK077415|Khsrp|16549|KH-type splicing regulatory protein	AK156541|Khsrp|16549|KH-type splicing regulatory protein	NM_010613|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr16_-_95680888_95680987	0.378086	bHLH_family.p2	AK142379|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm9_v1_chr16_+_45159173_45159221	0.377748	bHLH_family.p2	AB079386|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr2_-_26092876_26092939	0.377665	bHLH_family.p2	AK157992|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK140324|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK165642|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	BC030934|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	NM_153559|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2
mm9_v1_chr5_+_100468998_100469257	0.377385	bHLH_family.p2	AK167575|Enoph1|67870|enolase-phosphatase 1	NM_001163035|Enoph1|67870|enolase-phosphatase 1	NM_026421|Enoph1|67870|enolase-phosphatase 1	AK079062|Enoph1|67870|enolase-phosphatase 1	AK009954|Enoph1|67870|enolase-phosphatase 1	AK082747|Enoph1|67870|enolase-phosphatase 1	AK152021|Enoph1|67870|enolase-phosphatase 1	AK159356|Enoph1|67870|enolase-phosphatase 1	AK168696|Enoph1|67870|enolase-phosphatase 1	AK080714|Enoph1|67870|enolase-phosphatase 1	BC021429|Enoph1|67870|enolase-phosphatase 1	AK177338|Enoph1|67870|enolase-phosphatase 1	AK193770|Enoph1|67870|enolase-phosphatase 1
mm9_v1_chr9_+_74800828_74800859	0.376087	bHLH_family.p2	BC060215|BC031353|235493|cDNA sequence BC031353	NM_001113283|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr4_+_147314951_147315041	0.375524	bHLH_family.p2	AK011059|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK153761|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	NM_029841|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	BC012878|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK173332|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr11_+_97888023_97888023	0.374983	bHLH_family.p2	NM_001159483|Rpl19|19921|ribosomal protein L19
mm9_v1_chr2_-_104582953_104582979	0.374577	bHLH_family.p2	BC013499|Depdc7|211896|DEP domain containing 7	NM_144804|Depdc7|211896|DEP domain containing 7	AK144066|Depdc7|211896|DEP domain containing 7	AK165504|Depdc7|211896|DEP domain containing 7	AK134830|Depdc7|211896|DEP domain containing 7	AK162086|Depdc7|211896|DEP domain containing 7	AK162218|Depdc7|211896|DEP domain containing 7
mm9_v1_chr17_-_56765925_56766071	0.374374	bHLH_family.p2	AK190637|Lonp1|74142|lon peptidase 1, mitochondrial
mm9_v1_chr19_+_29038321_29038434	0.374282	bHLH_family.p2	AK016572|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	NM_028922|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2	AK041581|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr2_+_92215590_92215711	0.374199	bHLH_family.p2	BC010822|Pex16|18633|peroxisomal biogenesis factor 16
mm9_v1_chr4_-_82151180_82151288	0.373496	bHLH_family.p2	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr6_-_91066773_91066797	0.372694	bHLH_family.p2	AK173056|Nup210|54563|nucleoporin 210	AF113751|Nup210|54563|nucleoporin 210	AK077812|Nup210|54563|nucleoporin 210
mm9_v1_chr2_-_131005549_131005768	0.372234	bHLH_family.p2	BC075733|Cenpb|12616|centromere protein B	BC006628|Cenpb|12616|centromere protein B	BC053333|Cenpb|12616|centromere protein B	NM_007682|Cenpb|12616|centromere protein B
mm9_v1_chr4_-_141179720_141179764	0.371601	bHLH_family.p2	BC089627|Slc25a34|384071|solute carrier family 25, member 34	AK085913|Slc25a34|384071|solute carrier family 25, member 34	AK142924|Slc25a34|384071|solute carrier family 25, member 34	NM_001013780|Slc25a34|384071|solute carrier family 25, member 34
mm9_v1_chr15_+_81633192_81633246	0.368778	bHLH_family.p2	AY540632|Tef|21685|thyrotroph embryonic factor	BC017689|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr9_+_70526985_70526997	0.368693	bHLH_family.p2	AF011379|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr7_+_51502089_51502113	0.368679	bHLH_family.p2	AK169789|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	NM_025880|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK036099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chr14_+_31832323_31832337	0.36858	bHLH_family.p2	AK165182|Pbrm1|66923|polybromo 1	NM_001081251|Pbrm1|66923|polybromo 1
mm9_v1_chr1_-_167390568_167390623	0.367894	bHLH_family.p2	NM_028759|Dcaf6|74106|DDB1 and CUL4 associated factor 6
mm9_v1_chr17_-_65962822_65962911	0.367706	bHLH_family.p2	AF157497|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK003576|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK159582|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK168824|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK088132|Vapa|30960|vesicle-associated membrane protein, associated protein A	BC003866|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK167381|Vapa|30960|vesicle-associated membrane protein, associated protein A	NM_013933|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr11_-_94515067_94515072	0.3677	bHLH_family.p2	AK078516|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)	NM_177752|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr11_+_109224275_109224393	0.367666	bHLH_family.p2	
mm9_v1_chr18_+_61085303_61085326	0.367552	bHLH_family.p2	BC031745|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr4_-_132313025_132313152	0.367156	bHLH_family.p2	AK166253|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	BC009087|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	NM_133888|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	AK154599|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B
mm9_v1_chr5_-_21850490_21850524	0.366756	bHLH_family.p2	U24703|Reln|19699|reelin	AK035849|Reln|19699|reelin	AK042773|Reln|19699|reelin	AK082447|Reln|19699|reelin	AK082508|Reln|19699|reelin	AK164676|Reln|19699|reelin	NM_011261|Reln|19699|reelin
mm9_v1_chr7_-_28118628_28118706	0.366731	bHLH_family.p2	AK054297|Ltbp4|108075|latent transforming growth factor beta binding protein 4	BC059016|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AF410799|Ltbp4|108075|latent transforming growth factor beta binding protein 4	BC032073|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AK147753|Ltbp4|108075|latent transforming growth factor beta binding protein 4	NM_001113549|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AK157031|Ltbp4|108075|latent transforming growth factor beta binding protein 4
mm9_v1_chr13_+_47289371_47289389	0.366657	bHLH_family.p2	AK052846|Rnf144b|218215|ring finger protein 144B	NM_001170643|Rnf144b|218215|ring finger protein 144B	AK040939|Rnf144b|218215|ring finger protein 144B	BC025007|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr4_+_137024656_137024742	0.365193	bHLH_family.p2	AK147294|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	AK147396|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	NM_008305|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)
mm9_v1_chr14_-_55734213_55734388	0.36489	bHLH_family.p2	AY350744|Jph4|319984|junctophilin 4	BC052049|Jph4|319984|junctophilin 4	AK031092|Jph4|319984|junctophilin 4	NM_001003829|Jph4|319984|junctophilin 4	AK048607|Jph4|319984|junctophilin 4	AK148135|Jph4|319984|junctophilin 4
mm9_v1_chr10_-_4752710_4752812	0.364343	bHLH_family.p2	AK054222|Myct1|68632|myc target 1	AK030706|Myct1|68632|myc target 1	AK142963|Myct1|68632|myc target 1	BC096559|Myct1|68632|myc target 1	AY090114|Myct1|68632|myc target 1	AK003845|Myct1|68632|myc target 1	NM_026793|Myct1|68632|myc target 1
mm9_v1_chr15_+_78860623_78860757	0.363751	bHLH_family.p2	
mm9_v1_chrX_-_34731084_34731232	0.362438	bHLH_family.p2	CT010398|Ndufa1|54405|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1	AK007840|Ndufa1|54405|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1	BC024364|Ndufa1|54405|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1	NM_019443|Ndufa1|54405|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1
mm9_v1_chr5_-_38952777_38952930	0.362198	bHLH_family.p2	BC119358|Wdr1|22388|WD repeat domain 1	BC125295|Wdr1|22388|WD repeat domain 1	AK165225|Wdr1|22388|WD repeat domain 1	AK165323|Wdr1|22388|WD repeat domain 1	AK167813|Wdr1|22388|WD repeat domain 1	AK151146|Wdr1|22388|WD repeat domain 1	AF020055|Wdr1|22388|WD repeat domain 1	NM_011715|Wdr1|22388|WD repeat domain 1	AK153338|Wdr1|22388|WD repeat domain 1	AK170379|Wdr1|22388|WD repeat domain 1	AK167241|Wdr1|22388|WD repeat domain 1	AK169893|Wdr1|22388|WD repeat domain 1	AK156300|Wdr1|22388|WD repeat domain 1	AK167275|Wdr1|22388|WD repeat domain 1	AK004858|Wdr1|22388|WD repeat domain 1	AK169835|Wdr1|22388|WD repeat domain 1	BC049117|Wdr1|22388|WD repeat domain 1
mm9_v1_chr15_+_33012972_33013051	0.362117	bHLH_family.p2	AF009513|Pgcp|54381|plasma glutamate carboxypeptidase	AK152145|Pgcp|54381|plasma glutamate carboxypeptidase	AK152139|Pgcp|54381|plasma glutamate carboxypeptidase	AK054422|Pgcp|54381|plasma glutamate carboxypeptidase	AK137164|Pgcp|54381|plasma glutamate carboxypeptidase	AK154361|Pgcp|54381|plasma glutamate carboxypeptidase	AK032972|Pgcp|54381|plasma glutamate carboxypeptidase	BC037067|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr7_-_70357361_70357454	0.362059	bHLH_family.p2	AY574266|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AF225980|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK157809|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	L37663|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	NM_007390|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK034208|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7
mm9_v1_chr18_+_45719101_45719122	0.36173	bHLH_family.p2	AK149082|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK039033|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr3_-_107563049_107563194	0.360287	bHLH_family.p2	M21149|Csf1|12977|colony stimulating factor 1 (macrophage)	M15692|Csf1|12977|colony stimulating factor 1 (macrophage)	AK170154|Csf1|12977|colony stimulating factor 1 (macrophage)	M21952|Csf1|12977|colony stimulating factor 1 (macrophage)	S78392|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066187|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066200|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066205|Csf1|12977|colony stimulating factor 1 (macrophage)	X05010|Csf1|12977|colony stimulating factor 1 (macrophage)	AK136808|Csf1|12977|colony stimulating factor 1 (macrophage)	AK138489|Csf1|12977|colony stimulating factor 1 (macrophage)	AK154872|Csf1|12977|colony stimulating factor 1 (macrophage)	AK160995|Csf1|12977|colony stimulating factor 1 (macrophage)	AK166370|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chr11_+_6191599_6191621	0.360155	bHLH_family.p2	AK147289|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	NM_010956|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK169286|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chr4_+_101091913_101091947	0.359921	bHLH_family.p2	NM_001177605|Ak4|11639|adenylate kinase 4	AK154374|Ak4|11639|adenylate kinase 4	NM_001177604|Ak4|11639|adenylate kinase 4
mm9_v1_chr11_-_69828831_69828933	0.359751	bHLH_family.p2	Z71189|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	AK076037|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	BC026559|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	NM_017366|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain
mm9_v1_chr9_-_108166100_108166104	0.359356	bHLH_family.p2	BC007150|Dag1|13138|dystroglycan 1
mm9_v1_chr10_+_79479416_79479491	0.358424	bHLH_family.p2	AK159194|Hmha1|70719|histocompatibility (minor) HA-1	NM_001142701|Hmha1|70719|histocompatibility (minor) HA-1	AK170262|Hmha1|70719|histocompatibility (minor) HA-1	AK171304|Hmha1|70719|histocompatibility (minor) HA-1	AK159474|Hmha1|70719|histocompatibility (minor) HA-1
mm9_v1_chr9_+_65308824_65308871	0.358046	bHLH_family.p2	
mm9_v1_chr4_-_126430511_126430686	0.35791	bHLH_family.p2	BC017126|Ncdn|26562|neurochondrin	AK154889|Ncdn|26562|neurochondrin	AK170502|Ncdn|26562|neurochondrin	NM_011986|Ncdn|26562|neurochondrin
mm9_v1_chr18_-_60908058_60908102	0.357753	bHLH_family.p2	AK156504|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr10_-_76576422_76576449	0.357533	bHLH_family.p2	U11637|Col18a1|12822|collagen, type XVIII, alpha 1	BC043697|Col18a1|12822|collagen, type XVIII, alpha 1	NM_001109991|Col18a1|12822|collagen, type XVIII, alpha 1
mm9_v1_chr1_+_92895317_92895369	0.357066	bHLH_family.p2	AK041162|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr4_-_154772070_154772227	0.356547	bHLH_family.p2	AF326546|Gabrd|14403|gamma-aminobutyric acid (GABA) A receptor, subunit delta	AF326564|Gabrd|14403|gamma-aminobutyric acid (GABA) A receptor, subunit delta	BC116832|Gabrd|14403|gamma-aminobutyric acid (GABA) A receptor, subunit delta	BC116836|Gabrd|14403|gamma-aminobutyric acid (GABA) A receptor, subunit delta	S42882|Gabrd|14403|gamma-aminobutyric acid (GABA) A receptor, subunit delta	NM_008072|Gabrd|14403|gamma-aminobutyric acid (GABA) A receptor, subunit delta
mm9_v1_chr5_+_139728268_139728480	0.355855	bHLH_family.p2	NM_026269|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	AK003551|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr4_-_141795288_141795317	0.355208	bHLH_family.p2	AK018497|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene	AK052809|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene	NM_001109685|9030409G11Rik|71529|RIKEN cDNA 9030409G11 gene
mm9_v1_chr9_+_59598963_59599005	0.354237	bHLH_family.p2	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr10_-_118677059_118677116	0.354124	bHLH_family.p2	AK129225|Cand1|71902|cullin associated and neddylation disassociated 1	AK144869|Cand1|71902|cullin associated and neddylation disassociated 1	AK158080|Cand1|71902|cullin associated and neddylation disassociated 1	NM_027994|Cand1|71902|cullin associated and neddylation disassociated 1
mm9_v1_chr9_+_107449628_107449790	0.353892	bHLH_family.p2	AK132332|Zmynd10|114602|zinc finger, MYND domain containing 10	BC052357|Zmynd10|114602|zinc finger, MYND domain containing 10	NM_053253|Zmynd10|114602|zinc finger, MYND domain containing 10	AF123386|Zmynd10|114602|zinc finger, MYND domain containing 10
mm9_v1_chr18_+_11997728_11997798	0.353597	bHLH_family.p2	AK156273|Cables1|63955|CDK5 and Abl enzyme substrate 1	AF133208|Cables1|63955|CDK5 and Abl enzyme substrate 1	NM_001146287|Cables1|63955|CDK5 and Abl enzyme substrate 1	NM_022021|Cables1|63955|CDK5 and Abl enzyme substrate 1	BC145142|Cables1|63955|CDK5 and Abl enzyme substrate 1	BC150714|Cables1|63955|CDK5 and Abl enzyme substrate 1
mm9_v1_chr14_+_56097682_56097776	0.353505	bHLH_family.p2	AB045132|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK018788|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK146988|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC003484|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr8_-_108089811_108089973	0.35319	bHLH_family.p2	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr1_-_34899878_34899900	0.353101	bHLH_family.p2	AK220453|Fam168b|214469|family with sequence similarity 168, member B	NM_001160235|Fam168b|214469|family with sequence similarity 168, member B	NM_001160236|Fam168b|214469|family with sequence similarity 168, member B	NM_174997|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr1_-_182186373_182186388	0.352904	bHLH_family.p2	AK014706|Psen2|19165|presenilin 2	AK154119|Psen2|19165|presenilin 2
mm9_v1_chr16_+_33684551_33684609	0.352477	bHLH_family.p2	AK028518|Heg1|77446|HEG homolog 1 (zebrafish)	AK163128|Heg1|77446|HEG homolog 1 (zebrafish)	NM_175256|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr3_-_36374517_36374560	0.352122	bHLH_family.p2	D63423|Anxa5|11747|annexin A5
mm9_v1_chr8_-_87956665_87956752	0.351705	bHLH_family.p2	BC050139|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK169408|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC027027|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK017512|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK014959|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	NM_025722|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr13_-_120197722_120197851	0.351548	bHLH_family.p2	AK050478|Nnt|18115|nicotinamide nucleotide transhydrogenase	Z49204|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK052061|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK033282|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK040460|Nnt|18115|nicotinamide nucleotide transhydrogenase	BC008518|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK129006|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK084546|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK084604|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK087064|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK088044|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK159694|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK052234|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK054332|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK083413|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK085903|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK168736|Nnt|18115|nicotinamide nucleotide transhydrogenase	AK090115|Nnt|18115|nicotinamide nucleotide transhydrogenase	NM_008710|Nnt|18115|nicotinamide nucleotide transhydrogenase
mm9_v1_chr9_-_50411898_50411953	0.351422	bHLH_family.p2	AK135970|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	BC145731|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	BC145733|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	AK013503|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	AK013962|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein	NM_025848|Sdhd|66925|succinate dehydrogenase complex, subunit D, integral membrane protein
mm9_v1_chr1_+_82313187_82313198	0.351064	bHLH_family.p2	AK079448|Rhbdd1|76867|rhomboid domain containing 1	AK161153|Rhbdd1|76867|rhomboid domain containing 1
mm9_v1_chr15_+_101858606_101858684	0.351024	bHLH_family.p2	NM_010664|Krt18|16668|keratin 18	M11686|Krt18|16668|keratin 18	AK167469|Krt18|16668|keratin 18	AK145413|Krt18|16668|keratin 18	AK167072|Krt18|16668|keratin 18	AK167676|Krt18|16668|keratin 18	AK167432|Krt18|16668|keratin 18	AK167265|Krt18|16668|keratin 18	M36376|Krt18|16668|keratin 18	BC020474|Krt18|16668|keratin 18	BC089022|Krt18|16668|keratin 18
mm9_v1_chr8_+_12395518_12395518	0.349848	bHLH_family.p2	NM_009233|Sox1|20664|SRY-box containing gene 1
mm9_v1_chr4_+_154783298_154783366	0.349221	bHLH_family.p2	AK008257|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	NM_001166029|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	NM_177674|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	AK134858|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	BC056495|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene
mm9_v1_chr10_-_114752600_114752678	0.348011	bHLH_family.p2	AK172891|Rab21|216344|RAB21, member RAS oncogene family	BC055042|Rab21|216344|RAB21, member RAS oncogene family	NM_024454|Rab21|216344|RAB21, member RAS oncogene family	BC040104|Rab21|216344|RAB21, member RAS oncogene family
mm9_v1_chr4_+_106233690_106233781	0.347415	bHLH_family.p2	BC019797|Dhcr24|74754|24-dehydrocholesterol reductase	AY039762|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr16_-_46010510_46010548	0.347112	bHLH_family.p2	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr2_-_60122146_60122212	0.34689	bHLH_family.p2	AK002812|Cd302|66205|CD302 antigen
mm9_v1_chr7_-_135605026_135605189	0.346512	bHLH_family.p2	NM_009383|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1	AK132677|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm9_v1_chr5_+_37729786_37729846	0.346051	bHLH_family.p2	AB083066|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)	AK165051|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)	AK044977|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)
mm9_v1_chr8_+_122516412_122516427	0.345532	bHLH_family.p2	AK149909|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2	AK149925|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2	AK150180|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2	AK132171|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2
mm9_v1_chr10_-_93352428_93352466	0.345399	bHLH_family.p2	AB003144|Metap2|56307|methionine aminopeptidase 2	AK090323|Metap2|56307|methionine aminopeptidase 2	AK076804|Metap2|56307|methionine aminopeptidase 2
mm9_v1_chr17_-_23814399_23814413	0.345209	bHLH_family.p2	BC025860|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AF156164|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AK005382|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AK005530|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a
mm9_v1_chr2_-_110790259_110790446	0.345175	bHLH_family.p2	NM_001128103|Ano3|228432|anoctamin 3	AK045930|Ano3|228432|anoctamin 3	NM_001081556|Ano3|228432|anoctamin 3
mm9_v1_chr15_-_75739695_75739776	0.345039	bHLH_family.p2	BC082536|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	BC079855|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	BC013059|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK017616|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK044934|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK054335|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AF304351|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK017796|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	AK010347|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	NM_023240|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	NM_029663|Eef1d|66656|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm9_v1_chr5_+_104475948_104476060	0.344605	bHLH_family.p2	AK158058|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	AK004444|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	AK076500|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	NM_028794|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	BC033921|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm9_v1_chr17_+_24806616_24806711	0.344406	bHLH_family.p2	AK131127|Zfp598|213753|zinc finger protein 598	BC050859|Zfp598|213753|zinc finger protein 598	NM_183149|Zfp598|213753|zinc finger protein 598
mm9_v1_chr15_+_100446514_100446564	0.344316	bHLH_family.p2	AK151730|Dazap2|23994|DAZ associated protein 2	AK152511|Dazap2|23994|DAZ associated protein 2
mm9_v1_chr18_+_67624517_67624527	0.343796	bHLH_family.p2	AK143220|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr8_-_125222837_125223008	0.342903	bHLH_family.p2	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr17_-_25970305_25970305	0.341893	bHLH_family.p2	BC027427|Stub1|56424|STIP1 homology and U-Box containing protein 1	NM_019719|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr18_-_42110847_42110895	0.341737	bHLH_family.p2	BC119251|Prelid2|77619|PRELI domain containing 2	BC120711|Prelid2|77619|PRELI domain containing 2	BC145035|Prelid2|77619|PRELI domain containing 2	NM_029942|Prelid2|77619|PRELI domain containing 2	AK021193|Prelid2|77619|PRELI domain containing 2
mm9_v1_chr2_+_164323024_164323043	0.341229	bHLH_family.p2	NM_133779|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049171|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049990|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK019717|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK090020|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK155057|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153462|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153464|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK044499|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK157226|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr7_-_88851798_88851810	0.340975	bHLH_family.p2	AK163423|Homer2|26557|homer homolog 2 (Drosophila)	NM_001164086|Homer2|26557|homer homolog 2 (Drosophila)	NM_011983|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr12_-_73765729_73765833	0.340518	bHLH_family.p2	AK014100|Dhrs7|66375|dehydrogenase/reductase (SDR family) member 7	AK017856|Dhrs7|66375|dehydrogenase/reductase (SDR family) member 7	BC058739|Dhrs7|66375|dehydrogenase/reductase (SDR family) member 7	BC016189|Dhrs7|66375|dehydrogenase/reductase (SDR family) member 7	AK009385|Dhrs7|66375|dehydrogenase/reductase (SDR family) member 7	NM_025522|Dhrs7|66375|dehydrogenase/reductase (SDR family) member 7
mm9_v1_chr10_-_128142007_128142106	0.340007	bHLH_family.p2	AJ223732|Cdk2|12566|cyclin-dependent kinase 2	U63337|Cdk2|12566|cyclin-dependent kinase 2	AK148017|Cdk2|12566|cyclin-dependent kinase 2	AK042462|Cdk2|12566|cyclin-dependent kinase 2	AK151979|Cdk2|12566|cyclin-dependent kinase 2	AK153983|Cdk2|12566|cyclin-dependent kinase 2	AK154997|Cdk2|12566|cyclin-dependent kinase 2	AK036589|Cdk2|12566|cyclin-dependent kinase 2	AK152922|Cdk2|12566|cyclin-dependent kinase 2	BC005654|Cdk2|12566|cyclin-dependent kinase 2	BC026145|Cdk2|12566|cyclin-dependent kinase 2	AK146845|Cdk2|12566|cyclin-dependent kinase 2	NM_016756|Cdk2|12566|cyclin-dependent kinase 2	NM_183417|Cdk2|12566|cyclin-dependent kinase 2
mm9_v1_chr8_+_87514471_87514552	0.339476	bHLH_family.p2	NM_001167991|Hook2|170833|hook homolog 2 (Drosophila)	NM_133255|Hook2|170833|hook homolog 2 (Drosophila)	AK030599|Hook2|170833|hook homolog 2 (Drosophila)	AK136069|Hook2|170833|hook homolog 2 (Drosophila)	AK042048|Hook2|170833|hook homolog 2 (Drosophila)	AK166954|Hook2|170833|hook homolog 2 (Drosophila)	BC080744|Hook2|170833|hook homolog 2 (Drosophila)	BC019486|Hook2|170833|hook homolog 2 (Drosophila)	AK145768|Hook2|170833|hook homolog 2 (Drosophila)	AK169073|Hook2|170833|hook homolog 2 (Drosophila)	AK161612|Hook2|170833|hook homolog 2 (Drosophila)	BC055881|Hook2|170833|hook homolog 2 (Drosophila)	BC029967|Hook2|170833|hook homolog 2 (Drosophila)
mm9_v1_chr4_-_106136553_106136700	0.338899	bHLH_family.p2	AY273821|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9
mm9_v1_chr2_-_37278415_37278506	0.338803	bHLH_family.p2	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr11_+_78075242_78075302	0.338416	bHLH_family.p2	AK150829|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	NM_001002004|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC080706|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	AK149719|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC075633|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC019798|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr11_+_31770920_31770944	0.337597	bHLH_family.p2	AK173229|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4
mm9_v1_chr18_+_37979199_37979219	0.337459	bHLH_family.p2	AF464163|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	NM_033583|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464164|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr17_-_26645403_26645422	0.337364	bHLH_family.p2	BC006967|Dusp1|19252|dual specificity phosphatase 1	X61940|Dusp1|19252|dual specificity phosphatase 1	AK159658|Dusp1|19252|dual specificity phosphatase 1	AK150433|Dusp1|19252|dual specificity phosphatase 1	AK152183|Dusp1|19252|dual specificity phosphatase 1	AK152905|Dusp1|19252|dual specificity phosphatase 1	AK159251|Dusp1|19252|dual specificity phosphatase 1	AK159363|Dusp1|19252|dual specificity phosphatase 1	AK159567|Dusp1|19252|dual specificity phosphatase 1	AK167602|Dusp1|19252|dual specificity phosphatase 1	AK168627|Dusp1|19252|dual specificity phosphatase 1	NM_013642|Dusp1|19252|dual specificity phosphatase 1	AK145903|Dusp1|19252|dual specificity phosphatase 1	AK152324|Dusp1|19252|dual specificity phosphatase 1
mm9_v1_chr17_-_56175896_56176097	0.335404	bHLH_family.p2	AK162715|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138602|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138603|Sh3gl1|20405|SH3-domain GRB2-like 1	BC145345|Sh3gl1|20405|SH3-domain GRB2-like 1	NM_013664|Sh3gl1|20405|SH3-domain GRB2-like 1	U58885|Sh3gl1|20405|SH3-domain GRB2-like 1	AK167505|Sh3gl1|20405|SH3-domain GRB2-like 1	AK154836|Sh3gl1|20405|SH3-domain GRB2-like 1
mm9_v1_chr17_+_15080216_15080250	0.33533	bHLH_family.p2	AK005427|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC043303|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC043449|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK076083|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK076441|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK150772|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK083064|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK167490|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr6_+_113433507_113433615	0.335258	bHLH_family.p2	BC029065|Creld1|171508|cysteine-rich with EGF-like domains 1	AK155777|Creld1|171508|cysteine-rich with EGF-like domains 1	AB009020|Creld1|171508|cysteine-rich with EGF-like domains 1	BC010804|Creld1|171508|cysteine-rich with EGF-like domains 1	BC023893|Creld1|171508|cysteine-rich with EGF-like domains 1	NM_133930|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr12_+_17284028_17284034	0.335234	bHLH_family.p2	AK180230|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr14_-_52634206_52634316	0.335131	bHLH_family.p2	AK053445|Zfp219|69890|zinc finger protein 219
mm9_v1_chr11_-_53705099_53705188	0.334865	bHLH_family.p2	AB015800|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	AF111425|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	AF110417|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	BC031118|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	AK167451|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5
mm9_v1_chr8_-_126545208_126545336	0.334621	bHLH_family.p2	BC013550|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_133966|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK089463|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK154832|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr16_-_44333103_44333308	0.334547	bHLH_family.p2	AK171920|Sidt1|320007|SID1 transmembrane family, member 1	AK172408|Sidt1|320007|SID1 transmembrane family, member 1	AK171897|Sidt1|320007|SID1 transmembrane family, member 1	AK047199|Sidt1|320007|SID1 transmembrane family, member 1	AK046836|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr18_-_7004711_7004776	0.33384	bHLH_family.p2	BC137728|Mkx|210719|mohawk homeobox	AK034675|Mkx|210719|mohawk homeobox	NM_177595|Mkx|210719|mohawk homeobox
mm9_v1_chr10_-_6080145_6080228	0.333185	bHLH_family.p2	BC138365|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	BC138364|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB020886|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	BC071185|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AF326228|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB051563|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB025278|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AK053844|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	NM_031185|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12
mm9_v1_chr9_+_107951572_107951664	0.332799	bHLH_family.p2	AK165816|Gmppb|331026|GDP-mannose pyrophosphorylase B	AK158470|Gmppb|331026|GDP-mannose pyrophosphorylase B	NM_177910|Gmppb|331026|GDP-mannose pyrophosphorylase B	AK148125|Gmppb|331026|GDP-mannose pyrophosphorylase B	AK088295|Gmppb|331026|GDP-mannose pyrophosphorylase B	BC061207|Gmppb|331026|GDP-mannose pyrophosphorylase B
mm9_v1_chr15_+_38591604_38591751	0.332186	bHLH_family.p2	NM_025494|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK075779|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK129007|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK151237|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK006323|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK168914|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	BC010217|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AB088407|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	U13839|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1
mm9_v1_chr19_+_6400566_6400582	0.331658	bHLH_family.p2	AF081193|Rasgrp2|19395|RAS, guanyl releasing protein 2	U78171|Rasgrp2|19395|RAS, guanyl releasing protein 2	NM_011242|Rasgrp2|19395|RAS, guanyl releasing protein 2
mm9_v1_chr11_+_59918407_59918514	0.331189	bHLH_family.p2	BC049785|Rai1|19377|retinoic acid induced 1	NM_009021|Rai1|19377|retinoic acid induced 1
mm9_v1_chr12_-_76836549_76836721	0.330199	bHLH_family.p2	AF415215|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC037592|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	BC026814|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AF247177|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK154116|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK043586|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	AK149860|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1	NM_030750|Sgpp1|81535|sphingosine-1-phosphate phosphatase 1
mm9_v1_chr7_-_30066910_30067008	0.32996	bHLH_family.p2	AF099016|Spint2|20733|serine protease inhibitor, Kunitz type 2	AF099019|Spint2|20733|serine protease inhibitor, Kunitz type 2	AF099020|Spint2|20733|serine protease inhibitor, Kunitz type 2	BC003431|Spint2|20733|serine protease inhibitor, Kunitz type 2	NM_001082548|Spint2|20733|serine protease inhibitor, Kunitz type 2	NM_011464|Spint2|20733|serine protease inhibitor, Kunitz type 2
mm9_v1_chr16_-_94592586_94592621	0.329664	bHLH_family.p2	AF216309|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	BC038252|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159617|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_019543|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr7_+_3646102_3646199	0.32933	bHLH_family.p2	NM_024168|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK053916|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	BC091756|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK010759|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	BC002205|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)	AK013253|Tsen34|66078|tRNA splicing endonuclease 34 homolog (S. cerevisiae)
mm9_v1_chr4_+_98590457_98590500	0.328992	bHLH_family.p2	AK080882|Usp1|230484|ubiquitin specific peptidase 1	NM_146144|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr6_-_83725776_83725818	0.328601	bHLH_family.p2	AK157834|Tex261|21766|testis expressed gene 261	NM_009357|Tex261|21766|testis expressed gene 261
mm9_v1_chr15_-_77787081_77787112	0.327686	bHLH_family.p2	BC086662|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2	AK170795|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2	AK140027|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2	AK079870|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2
mm9_v1_chr4_+_116393559_116393581	0.326043	bHLH_family.p2	AK047755|Tesk2|230661|testis-specific kinase 2	NM_146151|Tesk2|230661|testis-specific kinase 2	AK031814|Tesk2|230661|testis-specific kinase 2	AK053368|Tesk2|230661|testis-specific kinase 2	BC029766|Tesk2|230661|testis-specific kinase 2
mm9_v1_chr10_+_80392814_80392835	0.325421	bHLH_family.p2	AK154952|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK010420|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK149895|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	BC023815|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	NM_008655|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	X54149|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta
mm9_v1_chr1_-_55144687_55144775	0.325146	bHLH_family.p2	AK088844|Hspd1|15510|heat shock protein 1 (chaperonin)	AK146831|Hspd1|15510|heat shock protein 1 (chaperonin)	NM_010477|Hspd1|15510|heat shock protein 1 (chaperonin)
mm9_v1_chr17_-_13185324_13185414	0.324538	bHLH_family.p2	AK076111|Wtap|60532|Wilms' tumour 1-associating protein	NM_175394|Wtap|60532|Wilms' tumour 1-associating protein	AK031965|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr11_+_97524725_97524725	0.323642	bHLH_family.p2	NM_139311|Mllt6|246198|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm9_v1_chr5_+_125956205_125956219	0.323515	bHLH_family.p2	AK043848|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr13_+_85329004_85329091	0.323165	bHLH_family.p2	AF287135|Ccnh|66671|cyclin H	AK137849|Ccnh|66671|cyclin H	AK078059|Ccnh|66671|cyclin H	NM_023243|Ccnh|66671|cyclin H
mm9_v1_chr1_-_72330767_72330887	0.322796	bHLH_family.p2	AF232011|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	BC013530|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AF242204|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK090327|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK135714|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK162100|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK010260|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	NM_023523|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase
mm9_v1_chr6_+_48986625_48986740	0.322664	bHLH_family.p2	AK044764|Gpnmb|93695|glycoprotein (transmembrane) nmb	AJ251685|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159908|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171347|Gpnmb|93695|glycoprotein (transmembrane) nmb	BC026375|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK076347|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK149700|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK150739|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159747|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171441|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171465|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK089272|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171474|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171618|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171608|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK079220|Gpnmb|93695|glycoprotein (transmembrane) nmb	AF322054|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK190718|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK192494|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK193667|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK202660|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK204559|Gpnmb|93695|glycoprotein (transmembrane) nmb
mm9_v1_chr19_+_8738494_8738608	0.322642	bHLH_family.p2	AK138282|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_001112697|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	NM_007698|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	BC094242|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS	AJ006521|Chrm1|12669|cholinergic receptor, muscarinic 1, CNS
mm9_v1_chrX_-_71176073_71176206	0.322442	bHLH_family.p2	BC004830|Renbp|19703|renin binding protein	AK167648|Renbp|19703|renin binding protein	AK014347|Renbp|19703|renin binding protein	BC014821|Renbp|19703|renin binding protein	BC035455|Renbp|19703|renin binding protein	BC034846|Renbp|19703|renin binding protein	AK146652|Renbp|19703|renin binding protein	AY183138|Renbp|19703|renin binding protein	NM_001164704|Renbp|19703|renin binding protein	NM_023132|Renbp|19703|renin binding protein
mm9_v1_chr12_-_101963277_101963329	0.321953	bHLH_family.p2	AK032316|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5
mm9_v1_chr19_-_60656627_60656934	0.321817	bHLH_family.p2	AK036606|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK169791|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK019216|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	BC026363|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK147382|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172096|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172097|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_030197|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene
mm9_v1_chr19_-_23211044_23211093	0.321729	bHLH_family.p2	AK145685|2410080I02Rik|68248|RIKEN cDNA 2410080I02 gene
mm9_v1_chr10_+_77068939_77069034	0.321496	bHLH_family.p2	AK012742|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150063|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150200|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK162035|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK160169|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK013019|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK148306|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK168988|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	NM_019929|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK167207|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AF063847|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115488|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115489|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)
mm9_v1_chr11_+_87551052_87551101	0.321212	bHLH_family.p2	AK146235|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK168229|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK167941|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK002990|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC061174|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	NM_009296|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC024391|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC087923|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	U43154|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)
mm9_v1_chr11_-_70465629_70465690	0.320836	bHLH_family.p2	AJ279848|Pfn1|18643|profilin 1
mm9_v1_chr4_-_138281116_138281156	0.32074	bHLH_family.p2	AK045964|Ubxn10|212190|UBX domain protein 10	AK161296|Ubxn10|212190|UBX domain protein 10	AK080662|Ubxn10|212190|UBX domain protein 10
mm9_v1_chr11_-_53244254_53244338	0.320663	bHLH_family.p2	BC027809|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK007982|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK017907|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK002389|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK005374|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	BC028519|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	AK003160|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII	NM_025352|Uqcrq|22272|ubiquinol-cytochrome c reductase, complex III subunit VII
mm9_v1_chr2_+_90687308_90687523	0.320618	bHLH_family.p2	AK008712|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	NM_019758|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC028929|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK016000|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011814|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038899|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038916|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK162807|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AF176009|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC065145|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK164169|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011874|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK151553|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008487|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK161441|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK007757|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008463|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011785|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK075890|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK003100|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK184198|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK215565|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK217615|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)
mm9_v1_chr19_-_24630299_24630460	0.320562	bHLH_family.p2	AK164552|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK133809|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK146100|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK149354|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	NM_008846|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	AK077334|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	BC034864|Pip5k1b|18719|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta
mm9_v1_chr17_+_36116923_36116951	0.320535	bHLH_family.p2	BC010298|Gnl1|14670|guanine nucleotide binding protein-like 1	AK078187|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr15_-_102455844_102455918	0.319612	bHLH_family.p2	BC026483|Atf7|223922|activating transcription factor 7	NM_146065|Atf7|223922|activating transcription factor 7	AK155444|Atf7|223922|activating transcription factor 7	AK157628|Atf7|223922|activating transcription factor 7	AK164412|Atf7|223922|activating transcription factor 7
mm9_v1_chr4_-_118966945_118967127	0.31953	bHLH_family.p2	X57621|Ybx1|22608|Y box protein 1	M62867|Ybx1|22608|Y box protein 1	U33196|Ybx1|22608|Y box protein 1	BC029747|Ybx1|22608|Y box protein 1	BC013620|Ybx1|22608|Y box protein 1	M60419|Ybx1|22608|Y box protein 1	BC061634|Ybx1|22608|Y box protein 1	BC031472|Ybx1|22608|Y box protein 1	BC049977|Ybx1|22608|Y box protein 1	BC013450|Ybx1|22608|Y box protein 1	AK011890|Ybx1|22608|Y box protein 1	AK150821|Ybx1|22608|Y box protein 1	NM_011732|Ybx1|22608|Y box protein 1
mm9_v1_chr12_+_77356412_77356500	0.318996	bHLH_family.p2	AK088700|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AF364579|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK180541|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr17_-_88197333_88197424	0.318726	bHLH_family.p2	AB052939|Kcnk12|210741|potassium channel, subfamily K, member 12	NM_199251|Kcnk12|210741|potassium channel, subfamily K, member 12
mm9_v1_chr18_-_77953224_77953235	0.31862	bHLH_family.p2	AK139552|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr7_+_150238626_150238701	0.318526	bHLH_family.p2	NM_133655|Cd81|12520|CD81 antigen	AK166521|Cd81|12520|CD81 antigen	AK170741|Cd81|12520|CD81 antigen	AK136370|Cd81|12520|CD81 antigen	BC011433|Cd81|12520|CD81 antigen
mm9_v1_chr18_-_61825143_61825192	0.318317	bHLH_family.p2	AK087736|E330013P06|328968|hypothetical protein E330013P06
mm9_v1_chr1_-_179726514_179726745	0.318072	bHLH_family.p2	BC139404|Adss|11566|adenylosuccinate synthetase, non muscle	BC139417|Adss|11566|adenylosuccinate synthetase, non muscle	AK004877|Adss|11566|adenylosuccinate synthetase, non muscle	L24554|Adss|11566|adenylosuccinate synthetase, non muscle	AK010263|Adss|11566|adenylosuccinate synthetase, non muscle	AK148420|Adss|11566|adenylosuccinate synthetase, non muscle	AK170279|Adss|11566|adenylosuccinate synthetase, non muscle	AK043273|Adss|11566|adenylosuccinate synthetase, non muscle	AK028060|Adss|11566|adenylosuccinate synthetase, non muscle	NM_007422|Adss|11566|adenylosuccinate synthetase, non muscle
mm9_v1_chr12_-_32635061_32635121	0.318045	bHLH_family.p2	AK028949|Hbp1|73389|high mobility group box transcription factor 1	AK132503|Hbp1|73389|high mobility group box transcription factor 1	AK139211|Hbp1|73389|high mobility group box transcription factor 1	AK142187|Hbp1|73389|high mobility group box transcription factor 1	AK053005|Hbp1|73389|high mobility group box transcription factor 1	AK028674|Hbp1|73389|high mobility group box transcription factor 1	BC026853|Hbp1|73389|high mobility group box transcription factor 1
mm9_v1_chr16_+_90831052_90831391	0.318034	bHLH_family.p2	AK037486|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC132305|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC144751|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC157969|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	BC100350|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	NM_027627|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene	AF358257|4931408A02Rik|70967|RIKEN cDNA 4931408A02 gene
mm9_v1_chr11_+_102622745_102622752	0.31792	bHLH_family.p2	AK157926|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_001110778|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_009613|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr11_+_120353171_120353266	0.31646	bHLH_family.p2	AK083831|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AK008038|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AF188712|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AK050282|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	BC003222|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
mm9_v1_chr7_+_107641884_107641945	0.316318	bHLH_family.p2	BC012697|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	U69135|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	U94593|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr12_-_92828896_92828926	0.315729	bHLH_family.p2	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr11_-_121534350_121534391	0.315017	bHLH_family.p2	BC088993|B3gntl1|210004|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	AK045461|B3gntl1|210004|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
mm9_v1_chr19_-_5424694_5424744	0.314862	bHLH_family.p2	CT010290|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chrX_+_34335642_34335646	0.314577	bHLH_family.p2	U27316|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK003467|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	NM_007451|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr7_+_4071087_4071169	0.314322	bHLH_family.p2	AK043998|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001001454|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001109765|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_021324|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK031550|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr11_+_69749297_69749476	0.313925	bHLH_family.p2	BC141112|Ybx2|53422|Y box protein 2	BC100454|Ybx2|53422|Y box protein 2	NM_016875|Ybx2|53422|Y box protein 2	AK131786|Ybx2|53422|Y box protein 2	AF073954|Ybx2|53422|Y box protein 2
mm9_v1_chr12_+_70298163_70298251	0.313841	bHLH_family.p2	AK161156|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK154174|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK034052|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene
mm9_v1_chr18_+_35278538_35278551	0.312309	bHLH_family.p2	AK168635|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK036752|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149721|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK149738|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK159339|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr12_-_36219651_36219745	0.312215	bHLH_family.p2	AK153678|Ahr|11622|aryl-hydrocarbon receptor	NM_013464|Ahr|11622|aryl-hydrocarbon receptor	AK155380|Ahr|11622|aryl-hydrocarbon receptor
mm9_v1_chr13_-_100785524_100785589	0.311104	bHLH_family.p2	BC027640|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146865|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK145564|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146844|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141193|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141194|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK132265|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr12_+_77634546_77634606	0.310557	bHLH_family.p2	AK080928|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	NM_153804|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	BC096443|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3	AK162025|Plekhg3|263406|pleckstrin homology domain containing, family G (with RhoGef domain) member 3
mm9_v1_chr14_-_51544497_51544585	0.309719	bHLH_family.p2	BC002296|Osgep|66246|O-sialoglycoprotein endopeptidase	AK167893|Osgep|66246|O-sialoglycoprotein endopeptidase	AK049955|Osgep|66246|O-sialoglycoprotein endopeptidase	AK005291|Osgep|66246|O-sialoglycoprotein endopeptidase	AK049480|Osgep|66246|O-sialoglycoprotein endopeptidase	AK157554|Osgep|66246|O-sialoglycoprotein endopeptidase	AK166415|Osgep|66246|O-sialoglycoprotein endopeptidase	AK076246|Osgep|66246|O-sialoglycoprotein endopeptidase	AK088346|Osgep|66246|O-sialoglycoprotein endopeptidase	AK142730|Osgep|66246|O-sialoglycoprotein endopeptidase	NM_133676|Osgep|66246|O-sialoglycoprotein endopeptidase
mm9_v1_chr15_+_98465328_98465599	0.309676	bHLH_family.p2	U20372|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498245|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498246|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr17_-_33918179_33918224	0.30935	bHLH_family.p2	AK009161|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr19_+_25481413_25481491	0.30903	bHLH_family.p2	AK147945|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr7_-_20189709_20189838	0.308193	bHLH_family.p2	AF042799|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK009334|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC010728|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC079543|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC103781|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK159443|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC106129|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC060092|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC051916|Clasrp|53609|CLK4-associating serine/arginine rich protein	NM_016680|Clasrp|53609|CLK4-associating serine/arginine rich protein
mm9_v1_chr4_+_130168140_130168255	0.307699	bHLH_family.p2	AK009389|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	AK160181|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr10_-_128063522_128063566	0.306971	bHLH_family.p2	BC100456|Rps26|27370|ribosomal protein S26	AK010689|Rps26|27370|ribosomal protein S26	AK008301|Rps26|27370|ribosomal protein S26	AK012722|Rps26|27370|ribosomal protein S26	AK018702|Rps26|27370|ribosomal protein S26	AK152132|Rps26|27370|ribosomal protein S26	NM_013765|Rps26|27370|ribosomal protein S26
mm9_v1_chr13_+_19714972_19715084	0.306488	bHLH_family.p2	AK080766|Sfrp4|20379|secreted frizzled-related protein 4	NM_016687|Sfrp4|20379|secreted frizzled-related protein 4	AK009981|Sfrp4|20379|secreted frizzled-related protein 4	AF117709|Sfrp4|20379|secreted frizzled-related protein 4	BC034853|Sfrp4|20379|secreted frizzled-related protein 4
mm9_v1_chr11_+_115891591_115891668	0.306329	bHLH_family.p2	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr6_-_6167086_6167104	0.305583	bHLH_family.p2	AK029020|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr2_+_70400179_70400352	0.30535	bHLH_family.p2	AK054554|Gad1|14415|glutamic acid decarboxylase 1	NM_008077|Gad1|14415|glutamic acid decarboxylase 1	AK148497|Gad1|14415|glutamic acid decarboxylase 1	AK160868|Gad1|14415|glutamic acid decarboxylase 1	AK136801|Gad1|14415|glutamic acid decarboxylase 1	BC027059|Gad1|14415|glutamic acid decarboxylase 1	AF326547|Gad1|14415|glutamic acid decarboxylase 1	AF326548|Gad1|14415|glutamic acid decarboxylase 1	Z49976|Gad1|14415|glutamic acid decarboxylase 1
mm9_v1_chr10_-_93352485_93352578	0.305342	bHLH_family.p2	BC092052|Metap2|56307|methionine aminopeptidase 2	BC010263|Metap2|56307|methionine aminopeptidase 2	AF434712|Metap2|56307|methionine aminopeptidase 2	AK165845|Metap2|56307|methionine aminopeptidase 2	BC002213|Metap2|56307|methionine aminopeptidase 2	AK147097|Metap2|56307|methionine aminopeptidase 2	AK159650|Metap2|56307|methionine aminopeptidase 2	AK163318|Metap2|56307|methionine aminopeptidase 2
mm9_v1_chr5_+_138070341_138070466	0.305216	bHLH_family.p2	NM_001168652|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	NM_146164|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK088331|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK158025|Lrch4-sap25|100316903|Lrch4-Sap25 gene	BC012525|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4
mm9_v1_chr8_+_112392441_112392545	0.304871	bHLH_family.p2	AK165088|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048472|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117961|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	NM_001122594|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117962|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048260|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2
mm9_v1_chr11_+_89892027_89892040	0.304854	bHLH_family.p2	AK003574|Tmem100|67888|transmembrane protein 100	AK033406|Tmem100|67888|transmembrane protein 100
mm9_v1_chr11_+_96891242_96891268	0.304051	bHLH_family.p2	NM_146027|Scrn2|217140|secernin 2
mm9_v1_chr8_+_123640069_123640092	0.30404	bHLH_family.p2	AK076319|Foxc2|14234|forkhead box C2	AK146887|Foxc2|14234|forkhead box C2	NM_013519|Foxc2|14234|forkhead box C2	X74040|Foxc2|14234|forkhead box C2
mm9_v1_chr9_+_102910816_102910949	0.303804	bHLH_family.p2	AK087350|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	AK169706|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	AK166724|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	NM_033314|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	BC035200|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1	AF323958|Slco2a1|24059|solute carrier organic anion transporter family, member 2a1
mm9_v1_chr14_-_62911797_62911815	0.303386	bHLH_family.p2	BC038059|Dleu7|239133|deleted in lymphocytic leukemia, 7	NM_173419|Dleu7|239133|deleted in lymphocytic leukemia, 7
mm9_v1_chr7_+_29649467_29649473	0.302886	bHLH_family.p2	AK009151|Lgals7|16858|lectin, galactose binding, soluble 7	AK003153|Lgals7|16858|lectin, galactose binding, soluble 7	AK008773|Lgals7|16858|lectin, galactose binding, soluble 7
mm9_v1_chr3_+_159158396_159158460	0.302685	bHLH_family.p2	NM_001172092|Depdc1a|76131|DEP domain containing 1a	NM_001172093|Depdc1a|76131|DEP domain containing 1a	NM_029523|Depdc1a|76131|DEP domain containing 1a	BC023934|Depdc1a|76131|DEP domain containing 1a	AK088719|Depdc1a|76131|DEP domain containing 1a	AK146458|Depdc1a|76131|DEP domain containing 1a	AK050456|Depdc1a|76131|DEP domain containing 1a
mm9_v1_chr8_+_87432522_87432575	0.302217	bHLH_family.p2	AK145192|Dnase2a|13423|deoxyribonuclease II alpha	NM_010062|Dnase2a|13423|deoxyribonuclease II alpha	AK167277|Dnase2a|13423|deoxyribonuclease II alpha	BC058609|Dnase2a|13423|deoxyribonuclease II alpha
mm9_v1_chr5_+_23870625_23870649	0.302089	bHLH_family.p2	AK158106|Nos3|18127|nitric oxide synthase 3, endothelial cell	AK077896|Nos3|18127|nitric oxide synthase 3, endothelial cell	NM_008713|Nos3|18127|nitric oxide synthase 3, endothelial cell	U53142|Nos3|18127|nitric oxide synthase 3, endothelial cell	BC052636|Nos3|18127|nitric oxide synthase 3, endothelial cell
mm9_v1_chr18_+_37120093_37120209	0.301925	bHLH_family.p2	AY013763|Pcdha5|12941|protocadherin alpha 5	NM_009959|Pcdha5|12941|protocadherin alpha 5	AB008181|Pcdha5|12941|protocadherin alpha 5
mm9_v1_chr15_+_78813524_78813616	0.301795	bHLH_family.p2	AK053194|Triobp|110253|TRIO and F-actin binding protein	AK170390|Triobp|110253|TRIO and F-actin binding protein	BC042760|Triobp|110253|TRIO and F-actin binding protein	AK197781|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr8_-_125075222_125075228	0.301657	bHLH_family.p2	NM_001037298|Fam38a|234839|family with sequence similarity 38, member A
mm9_v1_chr9_+_95538150_95538173	0.301625	bHLH_family.p2	AF352788|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	AK132395|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	BC051174|Pcolce2|76477|procollagen C-endopeptidase enhancer 2
mm9_v1_chr10_+_127774872_127774973	0.301565	bHLH_family.p2	BC013554|Cs|12974|citrate synthase	BC029754|Cs|12974|citrate synthase	NM_026444|Cs|12974|citrate synthase	AB056479|Cs|12974|citrate synthase
mm9_v1_chr3_-_94590356_94590436	0.3011	bHLH_family.p2	BC052941|Cgn|70737|cingulin	AK018143|Cgn|70737|cingulin	BC108378|Cgn|70737|cingulin	BC042459|Cgn|70737|cingulin	BC064474|Cgn|70737|cingulin	BC087546|Cgn|70737|cingulin	AK173148|Cgn|70737|cingulin	NM_001037711|Cgn|70737|cingulin
mm9_v1_chr15_-_43002356_43002397	0.300976	bHLH_family.p2	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr19_-_45890238_45890540	0.300383	bHLH_family.p2	AJ278536|Kcnip2|80906|Kv channel-interacting protein 2	AJ278537|Kcnip2|80906|Kv channel-interacting protein 2	AF439339|Kcnip2|80906|Kv channel-interacting protein 2	AF439340|Kcnip2|80906|Kv channel-interacting protein 2	AF439341|Kcnip2|80906|Kv channel-interacting protein 2	DQ148496|Kcnip2|80906|Kv channel-interacting protein 2	DQ148497|Kcnip2|80906|Kv channel-interacting protein 2	DQ148498|Kcnip2|80906|Kv channel-interacting protein 2	NM_030716|Kcnip2|80906|Kv channel-interacting protein 2	NM_145703|Kcnip2|80906|Kv channel-interacting protein 2	NM_145704|Kcnip2|80906|Kv channel-interacting protein 2	BC132215|Kcnip2|80906|Kv channel-interacting protein 2	BC138496|Kcnip2|80906|Kv channel-interacting protein 2	BC056434|Kcnip2|80906|Kv channel-interacting protein 2
mm9_v1_chr15_+_27396405_27396728	0.300172	bHLH_family.p2	AK083135|Ank|11732|progressive ankylosis	DQ832285|Ank|11732|progressive ankylosis	NM_020332|Ank|11732|progressive ankylosis	BC042644|Ank|11732|progressive ankylosis	BC054379|Ank|11732|progressive ankylosis	AK148070|Ank|11732|progressive ankylosis	AF001532|Ank|11732|progressive ankylosis	AF274752|Ank|11732|progressive ankylosis
mm9_v1_chr2_-_3249825_3249918	0.300104	bHLH_family.p2	AK139023|Rpp38|227522|ribonuclease P/MRP 38 subunit (human)	AK049133|Rpp38|227522|ribonuclease P/MRP 38 subunit (human)	BC051448|Rpp38|227522|ribonuclease P/MRP 38 subunit (human)	AK087782|Rpp38|227522|ribonuclease P/MRP 38 subunit (human)	NM_001013376|Rpp38|227522|ribonuclease P/MRP 38 subunit (human)
mm9_v1_chr5_+_28397902_28397951	0.299981	bHLH_family.p2	AK135941|Insig1|231070|insulin induced gene 1	AK135989|Insig1|231070|insulin induced gene 1	AK139913|Insig1|231070|insulin induced gene 1	AK151186|Insig1|231070|insulin induced gene 1	AK088380|Insig1|231070|insulin induced gene 1	AF527630|Insig1|231070|insulin induced gene 1	BC132167|Insig1|231070|insulin induced gene 1	BC132499|Insig1|231070|insulin induced gene 1	BC079559|Insig1|231070|insulin induced gene 1	NM_153526|Insig1|231070|insulin induced gene 1
mm9_v1_chr2_-_92210955_92211192	0.299891	bHLH_family.p2	HM141800|Gyltl1b|228366|glycosyltransferase-like 1B	AK220181|Gyltl1b|228366|glycosyltransferase-like 1B	BC096655|Gyltl1b|228366|glycosyltransferase-like 1B	BC116715|Gyltl1b|228366|glycosyltransferase-like 1B	AK077630|Gyltl1b|228366|glycosyltransferase-like 1B	BC058199|Gyltl1b|228366|glycosyltransferase-like 1B	AK081797|Gyltl1b|228366|glycosyltransferase-like 1B	AY742914|Gyltl1b|228366|glycosyltransferase-like 1B	AY742915|Gyltl1b|228366|glycosyltransferase-like 1B	NM_001166633|Gyltl1b|228366|glycosyltransferase-like 1B	NM_172670|Gyltl1b|228366|glycosyltransferase-like 1B
mm9_v1_chr2_-_127618207_127618237	0.299884	bHLH_family.p2	AK165423|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC048556|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK008527|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK027942|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC116797|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	BC116799|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene	AK005218|1500011K16Rik|67885|RIKEN cDNA 1500011K16 gene
mm9_v1_chr8_+_91115856_91115922	0.299859	bHLH_family.p2	AK192443|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK193874|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chrX_-_7248403_7248534	0.299346	bHLH_family.p2	BC119088|Plp2|18824|proteolipid protein 2	BC119090|Plp2|18824|proteolipid protein 2	NM_019755|Plp2|18824|proteolipid protein 2	AB031292|Plp2|18824|proteolipid protein 2	BC092095|Plp2|18824|proteolipid protein 2	BC083078|Plp2|18824|proteolipid protein 2	AK011282|Plp2|18824|proteolipid protein 2	AK003522|Plp2|18824|proteolipid protein 2	AK154228|Plp2|18824|proteolipid protein 2	AK012816|Plp2|18824|proteolipid protein 2
mm9_v1_chr4_-_129318264_129318285	0.299282	bHLH_family.p2	AK150240|Txlna|109658|taxilin alpha	AK161649|Txlna|109658|taxilin alpha	AK171101|Txlna|109658|taxilin alpha	AK078192|Txlna|109658|taxilin alpha
mm9_v1_chr17_+_15080188_15080199	0.299236	bHLH_family.p2	AK028052|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083880|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083881|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083882|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_026451|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr11_-_5344795_5344912	0.299232	bHLH_family.p2	AK163639|Znrf3|407821|zinc and ring finger 3	NM_001080924|Znrf3|407821|zinc and ring finger 3
mm9_v1_chr13_+_58909632_58909641	0.298818	bHLH_family.p2	AK147441|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr2_-_180655611_180655736	0.298374	bHLH_family.p2	BC061479|Ythdf1|228994|YTH domain family 1	AK172582|Ythdf1|228994|YTH domain family 1	AK075846|Ythdf1|228994|YTH domain family 1	BC065050|Ythdf1|228994|YTH domain family 1	NM_173761|Ythdf1|228994|YTH domain family 1	AK033241|Ythdf1|228994|YTH domain family 1	AK046768|Ythdf1|228994|YTH domain family 1
mm9_v1_chr2_+_4322447_4322516	0.298345	bHLH_family.p2	AK082365|Frmd4a|209630|FERM domain containing 4A	AK043369|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr5_+_140981590_140981602	0.298027	bHLH_family.p2	AK163588|Chst12|59031|carbohydrate sulfotransferase 12	AK170484|Chst12|59031|carbohydrate sulfotransferase 12	AK171208|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr17_-_56615861_56615871	0.297465	bHLH_family.p2	BC083188|Ptprs|19280|protein tyrosine phosphatase, receptor type, S	AK163915|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr2_+_118727248_118727453	0.297101	bHLH_family.p2	NM_001045523|Bahd1|228536|bromo adjacent homology domain containing 1	AK152597|Bahd1|228536|bromo adjacent homology domain containing 1
mm9_v1_chr9_+_61220162_61220251	0.296975	bHLH_family.p2	NM_001083927|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)	NM_001083928|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)	NM_009389|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm9_v1_chr11_-_77707282_77707373	0.296133	bHLH_family.p2	U94700|Pipox|19193|pipecolic acid oxidase	BC013525|Pipox|19193|pipecolic acid oxidase	AK135009|Pipox|19193|pipecolic acid oxidase	AK149488|Pipox|19193|pipecolic acid oxidase	AK008555|Pipox|19193|pipecolic acid oxidase	NM_008952|Pipox|19193|pipecolic acid oxidase
mm9_v1_chr11_-_106992869_106992950	0.295757	bHLH_family.p2	BC037661|Bptf|207165|bromodomain PHD finger transcription factor	BC046973|Bptf|207165|bromodomain PHD finger transcription factor
mm9_v1_chr7_-_125849255_125849313	0.295151	bHLH_family.p2	AK004583|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK150807|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr5_+_128112613_128112632	0.295134	bHLH_family.p2	AK050379|Glt1d1|319804|glycosyltransferase 1 domain containing 1	AK077577|Glt1d1|319804|glycosyltransferase 1 domain containing 1	BC115464|Glt1d1|319804|glycosyltransferase 1 domain containing 1	NM_177005|Glt1d1|319804|glycosyltransferase 1 domain containing 1
mm9_v1_chrX_+_72661966_72662056	0.295089	bHLH_family.p2	NM_001166457|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_001166459|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_145956|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	S68022|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK149844|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK028483|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK030736|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC021313|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK038919|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK011876|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC048179|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3
mm9_v1_chr5_-_65726802_65726885	0.294354	bHLH_family.p2	U07157|Rfc1|19687|replication factor C (activator 1) 1	X72711|Rfc1|19687|replication factor C (activator 1) 1	BC085174|Rfc1|19687|replication factor C (activator 1) 1	U01222|Rfc1|19687|replication factor C (activator 1) 1	U36441|Rfc1|19687|replication factor C (activator 1) 1	BC085173|Rfc1|19687|replication factor C (activator 1) 1	AK136937|Rfc1|19687|replication factor C (activator 1) 1	AK132028|Rfc1|19687|replication factor C (activator 1) 1	AK146164|Rfc1|19687|replication factor C (activator 1) 1	AK146314|Rfc1|19687|replication factor C (activator 1) 1	NM_011258|Rfc1|19687|replication factor C (activator 1) 1	U15037|Rfc1|19687|replication factor C (activator 1) 1
mm9_v1_chr12_-_60320438_60320474	0.294105	bHLH_family.p2	BC020022|Fbxo33|70611|F-box protein 33	NM_001033156|Fbxo33|70611|F-box protein 33
mm9_v1_chr18_+_75178416_75178439	0.293721	bHLH_family.p2	NM_027727|Dym|69190|dymeclin	AK081242|Dym|69190|dymeclin	BC038276|Dym|69190|dymeclin	AK154794|Dym|69190|dymeclin	BC092283|Dym|69190|dymeclin
mm9_v1_chr5_+_74931439_74931607	0.293355	bHLH_family.p2	AK168464|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_001159573|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_001159574|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_024183|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK049672|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK008561|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK005061|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK164105|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	BC003263|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)
mm9_v1_chr9_-_107888185_107888220	0.292141	bHLH_family.p2	BC115538|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK020090|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK076092|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene
mm9_v1_chr7_+_107641863_107641872	0.292084	bHLH_family.p2	AK054060|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK134116|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK142687|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK165245|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK035298|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)	AK172307|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr15_-_97597988_97598129	0.29202	bHLH_family.p2	AK142594|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK044566|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK169430|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK162003|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	BC020532|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177810|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177811|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_144850|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr1_+_174430359_174430439	0.291744	bHLH_family.p2	AK151576|Tagln2|21346|transgelin 2	NM_178598|Tagln2|21346|transgelin 2	AK167395|Tagln2|21346|transgelin 2	BC009076|Tagln2|21346|transgelin 2	AK167922|Tagln2|21346|transgelin 2	AF149291|Tagln2|21346|transgelin 2	AK171088|Tagln2|21346|transgelin 2	AK172892|Tagln2|21346|transgelin 2	AF465519|Tagln2|21346|transgelin 2
mm9_v1_chr14_+_26661614_26661734	0.291235	bHLH_family.p2	NM_013469|Anxa11|11744|annexin A11	U65986|Anxa11|11744|annexin A11	AK044203|Anxa11|11744|annexin A11	AK140375|Anxa11|11744|annexin A11	AK170850|Anxa11|11744|annexin A11	AK137158|Anxa11|11744|annexin A11	BC012875|Anxa11|11744|annexin A11
mm9_v1_chr6_-_124662155_124662210	0.291065	bHLH_family.p2	AK081757|Emg1|14791|EMG1 nucleolar protein homolog (S. cerevisiae)	NM_013536|Emg1|14791|EMG1 nucleolar protein homolog (S. cerevisiae)
mm9_v1_chrX_+_45499599_45499837	0.290865	bHLH_family.p2	AK156202|Sash3|74131|SAM and SH3 domain containing 3	AK004734|Sash3|74131|SAM and SH3 domain containing 3	NM_028773|Sash3|74131|SAM and SH3 domain containing 3	AK171017|Sash3|74131|SAM and SH3 domain containing 3	BC064734|Sash3|74131|SAM and SH3 domain containing 3	AJ306422|Sash3|74131|SAM and SH3 domain containing 3
mm9_v1_chr17_-_24856893_24856911	0.290389	bHLH_family.p2	AK006941|Snhg9|73474|small nucleolar RNA host gene (non-protein coding) 9
mm9_v1_chr15_+_80629020_80629144	0.289681	bHLH_family.p2	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr4_-_118993081_118993127	0.289562	bHLH_family.p2	BC050116|Ppih|66101|peptidyl prolyl isomerase H	BC016565|Ppih|66101|peptidyl prolyl isomerase H	BC098490|Ppih|66101|peptidyl prolyl isomerase H	AK136330|Ppih|66101|peptidyl prolyl isomerase H	AK005202|Ppih|66101|peptidyl prolyl isomerase H	AK014665|Ppih|66101|peptidyl prolyl isomerase H	AK164299|Ppih|66101|peptidyl prolyl isomerase H	AK003179|Ppih|66101|peptidyl prolyl isomerase H	AK008394|Ppih|66101|peptidyl prolyl isomerase H	AK134995|Ppih|66101|peptidyl prolyl isomerase H	NM_001110129|Ppih|66101|peptidyl prolyl isomerase H	NM_001110130|Ppih|66101|peptidyl prolyl isomerase H	NM_028677|Ppih|66101|peptidyl prolyl isomerase H
mm9_v1_chr5_-_140865121_140865262	0.288831	bHLH_family.p2	AK045061|Snx8|231834|sorting nexin 8	AK082871|Snx8|231834|sorting nexin 8	AK148429|Snx8|231834|sorting nexin 8	NM_172277|Snx8|231834|sorting nexin 8	BC037599|Snx8|231834|sorting nexin 8
mm9_v1_chr8_+_26830480_26830683	0.288802	bHLH_family.p2	NM_028000|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC023111|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK144593|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC089556|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC062173|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK009455|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC099489|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr8_-_86095743_86095784	0.287879	bHLH_family.p2	
mm9_v1_chr6_-_146450713_146450744	0.287814	bHLH_family.p2	AK143206|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2
mm9_v1_chr11_-_102559011_102559087	0.28756	bHLH_family.p2	AK166820|Ccdc43|52715|coiled-coil domain containing 43	AK009319|Ccdc43|52715|coiled-coil domain containing 43	AK011254|Ccdc43|52715|coiled-coil domain containing 43	NM_025918|Ccdc43|52715|coiled-coil domain containing 43	AK028834|Ccdc43|52715|coiled-coil domain containing 43	AK161543|Ccdc43|52715|coiled-coil domain containing 43	BC058520|Ccdc43|52715|coiled-coil domain containing 43	BC061076|Ccdc43|52715|coiled-coil domain containing 43
mm9_v1_chr2_+_138104219_138104260	0.286898	bHLH_family.p2	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr12_+_87087488_87087539	0.286488	bHLH_family.p2	AY260574|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260575|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260576|Mfsd7c|217721|major facilitator superfamily domain containing 7C	BC011209|Mfsd7c|217721|major facilitator superfamily domain containing 7C	NM_145447|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AK145696|Mfsd7c|217721|major facilitator superfamily domain containing 7C
mm9_v1_chr16_-_18248659_18248687	0.286249	bHLH_family.p2	L25255|Ranbp1|19385|RAN binding protein 1
mm9_v1_chr19_-_5457470_5457607	0.286161	bHLH_family.p2	BC016659|Ccdc85b|240514|coiled-coil domain containing 85B	BC094592|Ccdc85b|240514|coiled-coil domain containing 85B	BC058411|Ccdc85b|240514|coiled-coil domain containing 85B	NM_198616|Ccdc85b|240514|coiled-coil domain containing 85B
mm9_v1_chr11_-_120685366_120685377	0.28544	bHLH_family.p2	AF127033|Fasn|14104|fatty acid synthase
mm9_v1_chr4_+_98590565_98590631	0.285245	bHLH_family.p2	BC018179|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr19_+_21727662_21727704	0.285079	bHLH_family.p2	AK050879|Fam108b|226016|family with sequence similarity 108, member B
mm9_v1_chr9_-_66682454_66682525	0.285004	bHLH_family.p2	AB197123|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	AK002310|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	BC050923|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	BC063254|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	NM_026674|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)	AK155147|Aph1c|68318|anterior pharynx defective 1c homolog (C. elegans)
mm9_v1_chr8_+_107872704_107872772	0.284796	bHLH_family.p2	BC151197|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr13_+_109004589_109004634	0.284701	bHLH_family.p2	AK049118|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	BC005602|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	NM_029001|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK050441|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK137668|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK018616|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK037162|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)
mm9_v1_chr1_-_137001804_137001852	0.28461	bHLH_family.p2	BC141210|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	AK085901|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	AK137380|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	NM_001033409|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6
mm9_v1_chr11_+_75275123_75275158	0.284283	bHLH_family.p2	AK018628|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene	AK008813|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene
mm9_v1_chr7_+_94732677_94732677	0.283861	bHLH_family.p2	NM_001081414|Grm5|108071|glutamate receptor, metabotropic 5	NM_001143834|Grm5|108071|glutamate receptor, metabotropic 5
mm9_v1_chr15_-_81560257_81560281	0.283375	bHLH_family.p2	BC052862|Rangap1|19387|RAN GTPase activating protein 1	AK088768|Rangap1|19387|RAN GTPase activating protein 1	AK145459|Rangap1|19387|RAN GTPase activating protein 1	AK129452|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr6_-_6167034_6167063	0.283335	bHLH_family.p2	AK002829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK012670|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr2_-_73224394_73224535	0.283324	bHLH_family.p2	AK090081|Gpr155|68526|G protein-coupled receptor 155	BC115698|Gpr155|68526|G protein-coupled receptor 155	AK089436|Gpr155|68526|G protein-coupled receptor 155	HM161763|Gpr155|68526|G protein-coupled receptor 155	HM161764|Gpr155|68526|G protein-coupled receptor 155	HM161765|Gpr155|68526|G protein-coupled receptor 155	HM161766|Gpr155|68526|G protein-coupled receptor 155	NM_001080707|Gpr155|68526|G protein-coupled receptor 155	NM_001190297|Gpr155|68526|G protein-coupled receptor 155
mm9_v1_chr8_+_109417539_109417610	0.283248	bHLH_family.p2	NM_011574|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	BC068113|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK144455|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK146263|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK150862|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK168470|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK173318|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)
mm9_v1_chr2_-_25211822_25211914	0.282345	bHLH_family.p2	AF285235|Dpp7|83768|dipeptidylpeptidase 7	AK028293|Dpp7|83768|dipeptidylpeptidase 7	BC027205|Dpp7|83768|dipeptidylpeptidase 7	NM_031843|Dpp7|83768|dipeptidylpeptidase 7	AK154193|Dpp7|83768|dipeptidylpeptidase 7	BC052861|Dpp7|83768|dipeptidylpeptidase 7	AK140406|Dpp7|83768|dipeptidylpeptidase 7	AK140420|Dpp7|83768|dipeptidylpeptidase 7
mm9_v1_chr9_-_106340536_106340558	0.282345	bHLH_family.p2	AK002423|Acy1|109652|aminoacylase 1	BC005631|Acy1|109652|aminoacylase 1
mm9_v1_chr4_-_140634151_140634281	0.281916	bHLH_family.p2	AK197123|Necap2|66147|NECAP endocytosis associated 2	AK213029|Necap2|66147|NECAP endocytosis associated 2	AK218572|Necap2|66147|NECAP endocytosis associated 2	AK003463|Necap2|66147|NECAP endocytosis associated 2	AK172538|Necap2|66147|NECAP endocytosis associated 2	AK156566|Necap2|66147|NECAP endocytosis associated 2	AK170987|Necap2|66147|NECAP endocytosis associated 2	AK145874|Necap2|66147|NECAP endocytosis associated 2	AK155871|Necap2|66147|NECAP endocytosis associated 2	BC037069|Necap2|66147|NECAP endocytosis associated 2	NM_025383|Necap2|66147|NECAP endocytosis associated 2
mm9_v1_chr7_+_17460662_17460665	0.281744	bHLH_family.p2	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr16_+_5050149_5050235	0.281439	bHLH_family.p2	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chr1_-_75176965_75176984	0.281084	bHLH_family.p2	AK151165|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm9_v1_chr2_-_37558794_37558806	0.28102	bHLH_family.p2	BC014710|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr17_+_53706556_53706657	0.28089	bHLH_family.p2	AK132486|Kat2b|18519|K(lysine) acetyltransferase 2B	BC138195|Kat2b|18519|K(lysine) acetyltransferase 2B	BC145896|Kat2b|18519|K(lysine) acetyltransferase 2B	BC082581|Kat2b|18519|K(lysine) acetyltransferase 2B	AF254442|Kat2b|18519|K(lysine) acetyltransferase 2B
mm9_v1_chr1_-_43149260_43149340	0.280421	bHLH_family.p2	AK159332|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	AK141742|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1
mm9_v1_chr19_-_5424473_5424593	0.280258	bHLH_family.p2	AK005445|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr16_-_85173764_85173823	0.280091	bHLH_family.p2	AK218334|App|11820|amyloid beta (A4) precursor protein	AY267348|App|11820|amyloid beta (A4) precursor protein	AK148439|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr10_-_122422886_122422975	0.279608	bHLH_family.p2	AK052706|D630033A02Rik|402753|RIKEN cDNA D630033A02 gene
mm9_v1_chr11_-_69137260_69137374	0.279395	bHLH_family.p2	AK147774|Cntrob|216846|centrobin, centrosomal BRCA2 interacting protein	AK036710|Cntrob|216846|centrobin, centrosomal BRCA2 interacting protein	NM_172560|Cntrob|216846|centrobin, centrosomal BRCA2 interacting protein
mm9_v1_chrX_+_98449866_98450159	0.279307	bHLH_family.p2	AF114260|Foxo4|54601|forkhead box O4	NM_018789|Foxo4|54601|forkhead box O4	AK157830|Foxo4|54601|forkhead box O4	BC099460|Foxo4|54601|forkhead box O4	BC139275|Foxo4|54601|forkhead box O4	BC139304|Foxo4|54601|forkhead box O4	AB032770|Foxo4|54601|forkhead box O4	AB221664|Foxo4|54601|forkhead box O4
mm9_v1_chr8_+_87432586_87432692	0.279023	bHLH_family.p2	BC060661|Dnase2a|13423|deoxyribonuclease II alpha
mm9_v1_chr5_+_138696947_138696986	0.27884	bHLH_family.p2	AK003086|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene	AK010598|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene	AK002488|0910001L09Rik|66096|RIKEN cDNA 0910001L09 gene
mm9_v1_chr4_-_147818818_147818893	0.278175	bHLH_family.p2	BC071203|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK004550|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK078442|Ubiad1|71707|UbiA prenyltransferase domain containing 1	NM_027873|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK034787|Ubiad1|71707|UbiA prenyltransferase domain containing 1
mm9_v1_chr11_-_86807216_86807263	0.277825	bHLH_family.p2	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr9_+_107456969_107456986	0.277815	bHLH_family.p2	BC002173|Rassf1|56289|Ras association (RalGDS/AF-6) domain family member 1	NM_019713|Rassf1|56289|Ras association (RalGDS/AF-6) domain family member 1
mm9_v1_chr4_-_11118342_11118420	0.277721	bHLH_family.p2	AK080292|A630034I12Rik|329790|RIKEN cDNA A630034I12 gene	AK169448|A630034I12Rik|329790|RIKEN cDNA A630034I12 gene
mm9_v1_chr1_-_33814537_33814587	0.277606	bHLH_family.p2	AK083600|Bag2|213539|BCL2-associated athanogene 2	AK051352|Bag2|213539|BCL2-associated athanogene 2	BC028944|Bag2|213539|BCL2-associated athanogene 2	AK144720|Bag2|213539|BCL2-associated athanogene 2
mm9_v1_chr16_-_18248701_18248813	0.277407	bHLH_family.p2	AK008276|Ranbp1|19385|RAN binding protein 1	AK002989|Ranbp1|19385|RAN binding protein 1	AK151167|Ranbp1|19385|RAN binding protein 1	AK153074|Ranbp1|19385|RAN binding protein 1	AK167053|Ranbp1|19385|RAN binding protein 1	AK088781|Ranbp1|19385|RAN binding protein 1	AK166642|Ranbp1|19385|RAN binding protein 1	NM_011239|Ranbp1|19385|RAN binding protein 1	X56045|Ranbp1|19385|RAN binding protein 1	X56046|Ranbp1|19385|RAN binding protein 1	BC061140|Ranbp1|19385|RAN binding protein 1
mm9_v1_chr11_-_75003955_75003987	0.277031	bHLH_family.p2	BC044663|Dph1|116905|DPH1 homolog (S. cerevisiae)	BC080761|Dph1|116905|DPH1 homolog (S. cerevisiae)	AK015645|Dph1|116905|DPH1 homolog (S. cerevisiae)	AK128996|Dph1|116905|DPH1 homolog (S. cerevisiae)	AY078170|Dph1|116905|DPH1 homolog (S. cerevisiae)	NM_144491|Dph1|116905|DPH1 homolog (S. cerevisiae)	AK082812|Dph1|116905|DPH1 homolog (S. cerevisiae)
mm9_v1_chr5_+_123794456_123794498	0.276684	bHLH_family.p2	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr17_+_49567718_49567797	0.276672	bHLH_family.p2	AK157231|Mocs1|56738|molybdenum cofactor synthesis 1
mm9_v1_chr11_-_97560651_97560697	0.276167	bHLH_family.p2	BC016419|Pcgf2|22658|polycomb group ring finger 2	NM_001163307|Pcgf2|22658|polycomb group ring finger 2
mm9_v1_chr1_-_75138905_75138941	0.275643	bHLH_family.p2	BC028815|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	AK029090|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	NM_026977|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene
mm9_v1_chr6_-_97010364_97010406	0.275499	bHLH_family.p2	BC089490|Fam19a4|320701|family with sequence similarity 19, member A4	AK081531|Fam19a4|320701|family with sequence similarity 19, member A4	AK084114|Fam19a4|320701|family with sequence similarity 19, member A4	NM_177233|Fam19a4|320701|family with sequence similarity 19, member A4	AK149355|Fam19a4|320701|family with sequence similarity 19, member A4
mm9_v1_chr16_+_17797405_17797532	0.275411	bHLH_family.p2	AB024432|Scarf2|224024|scavenger receptor class F, member 2	AK142378|Scarf2|224024|scavenger receptor class F, member 2	BC139758|Scarf2|224024|scavenger receptor class F, member 2	BC059226|Scarf2|224024|scavenger receptor class F, member 2	BC060084|Scarf2|224024|scavenger receptor class F, member 2	AK143208|Scarf2|224024|scavenger receptor class F, member 2
mm9_v1_chr5_-_114280434_114280521	0.275128	bHLH_family.p2	AK089214|Selplg|20345|selectin, platelet (p-selectin) ligand	AK155762|Selplg|20345|selectin, platelet (p-selectin) ligand	AK156933|Selplg|20345|selectin, platelet (p-selectin) ligand	AK158134|Selplg|20345|selectin, platelet (p-selectin) ligand	BC003874|Selplg|20345|selectin, platelet (p-selectin) ligand	AK172077|Selplg|20345|selectin, platelet (p-selectin) ligand	AK171693|Selplg|20345|selectin, platelet (p-selectin) ligand	AK156551|Selplg|20345|selectin, platelet (p-selectin) ligand	AK089188|Selplg|20345|selectin, platelet (p-selectin) ligand	NM_009151|Selplg|20345|selectin, platelet (p-selectin) ligand
mm9_v1_chr19_-_58935417_58935456	0.275067	bHLH_family.p2	AB093239|Hspa12a|73442|heat shock protein 12A	BC030362|Hspa12a|73442|heat shock protein 12A	AK038491|Hspa12a|73442|heat shock protein 12A	AK006867|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr8_-_11478623_11478709	0.274595	bHLH_family.p2	AK152454|Rab20|19332|RAB20, member RAS oncogene family	BC089570|Rab20|19332|RAB20, member RAS oncogene family	AK163743|Rab20|19332|RAB20, member RAS oncogene family	AK164541|Rab20|19332|RAB20, member RAS oncogene family	AK145566|Rab20|19332|RAB20, member RAS oncogene family	BC051569|Rab20|19332|RAB20, member RAS oncogene family
mm9_v1_chr11_-_80191504_80191518	0.274312	bHLH_family.p2	BC044897|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK153246|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK078548|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	NM_027472|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr7_+_134388053_134388144	0.274171	bHLH_family.p2	BC139048|Zfp771|244216|zinc finger protein 771	BC139049|Zfp771|244216|zinc finger protein 771	BC145524|Zfp771|244216|zinc finger protein 771
mm9_v1_chr18_-_60907984_60908001	0.274099	bHLH_family.p2	AF520867|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr17_-_43013469_43013643	0.274006	bHLH_family.p2	AK046750|Cd2ap|12488|CD2-associated protein
mm9_v1_chr1_+_95375503_95375639	0.272871	bHLH_family.p2	NM_001159717|Sept2|18000|septin 2	NM_001159718|Sept2|18000|septin 2	NM_010891|Sept2|18000|septin 2	AK146616|Sept2|18000|septin 2	AK151591|Sept2|18000|septin 2	AK028072|Sept2|18000|septin 2	AK171331|Sept2|18000|septin 2	D49382|Sept2|18000|septin 2	NM_001159719|Sept2|18000|septin 2
mm9_v1_chr5_-_30764170_30764304	0.272448	bHLH_family.p2	AY586513|Otof|83762|otoferlin	BC145107|Otof|83762|otoferlin	BC145108|Otof|83762|otoferlin	BC150702|Otof|83762|otoferlin	AF183183|Otof|83762|otoferlin	AF183184|Otof|83762|otoferlin	AK147256|Otof|83762|otoferlin	AK147434|Otof|83762|otoferlin	AK046460|Otof|83762|otoferlin	NM_001100395|Otof|83762|otoferlin	NM_031875|Otof|83762|otoferlin
mm9_v1_chr19_+_4192077_4192212	0.272425	bHLH_family.p2	AK151582|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK150344|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152051|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152585|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK090070|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167538|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK159575|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	BC014828|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	U25809|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167244|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167880|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167981|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	NM_031868|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK007932|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152667|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK028392|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK153517|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK202833|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform
mm9_v1_chr11_+_51433236_51433386	0.271862	bHLH_family.p2	AK008766|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK019134|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	NM_026631|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	BC024944|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK007340|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK193298|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK199159|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)
mm9_v1_chr11_+_85124739_85124974	0.271671	bHLH_family.p2	BC051966|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	NM_016910|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK157818|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK166632|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK171714|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK051509|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK050831|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	BC023492|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK053727|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AF200464|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform
mm9_v1_chr3_-_107499460_107499466	0.271649	bHLH_family.p2	NM_145542|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr11_-_51569907_51570119	0.271384	bHLH_family.p2	AK163998|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)	AK031553|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)	AK082810|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)	AK162795|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)	AK082478|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)	AK029139|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)	AK155182|Sec24a|77371|Sec24 related gene family, member A (S. cerevisiae)
mm9_v1_chr5_-_23349880_23349980	0.271249	bHLH_family.p2	AK008581|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	AK003864|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	BC055352|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	NM_025394|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm9_v1_chr11_+_6191622_6191675	0.271195	bHLH_family.p2	AK150009|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK220536|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK008811|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	BC061232|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK201619|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK204071|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	BC057354|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK088582|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chr7_-_116925058_116925063	0.271189	bHLH_family.p2	AK020731|Nrip3|78593|nuclear receptor interacting protein 3	AK083130|Nrip3|78593|nuclear receptor interacting protein 3	NM_020610|Nrip3|78593|nuclear receptor interacting protein 3
mm9_v1_chr7_-_28338185_28338214	0.271104	bHLH_family.p2	BC076586|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr11_+_102964362_102964424	0.270906	bHLH_family.p2	AK199070|Acbd4|67131|acyl-Coenzyme A binding domain containing 4	AK008170|Acbd4|67131|acyl-Coenzyme A binding domain containing 4
mm9_v1_chr11_-_118151298_118151557	0.270732	bHLH_family.p2	AK129363|Usp36|72344|ubiquitin specific peptidase 36	AK079342|Usp36|72344|ubiquitin specific peptidase 36	AK165635|Usp36|72344|ubiquitin specific peptidase 36	AK049205|Usp36|72344|ubiquitin specific peptidase 36	AK028572|Usp36|72344|ubiquitin specific peptidase 36	NM_001033528|Usp36|72344|ubiquitin specific peptidase 36
mm9_v1_chr13_-_34027843_34027864	0.27054	bHLH_family.p2	AK169145|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	AK167295|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	AK033731|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	U25844|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	AK154700|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	BC006766|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm9_v1_chr1_+_167391489_167391498	0.270141	bHLH_family.p2	BC018324|Brp44|70456|brain protein 44
mm9_v1_chr18_-_80666366_80666458	0.269488	bHLH_family.p2	BC053435|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	NM_026295|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	AK044530|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	AK156617|Ctdp1|67655|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
mm9_v1_chr4_-_116793851_116793888	0.269423	bHLH_family.p2	AK020599|Btbd19|78611|BTB (POZ) domain containing 19
mm9_v1_chr11_+_102742557_102742605	0.269365	bHLH_family.p2	AK032002|Ccdc103|73293|coiled-coil domain containing 103	NM_028492|Ccdc103|73293|coiled-coil domain containing 103	BC119102|Ccdc103|73293|coiled-coil domain containing 103	BC119104|Ccdc103|73293|coiled-coil domain containing 103	BC144894|Ccdc103|73293|coiled-coil domain containing 103	AK006639|Ccdc103|73293|coiled-coil domain containing 103
mm9_v1_chr4_-_70195870_70195917	0.269315	bHLH_family.p2	BC088994|Megf9|230316|multiple EGF-like-domains 9	BC138128|Megf9|230316|multiple EGF-like-domains 9	BC138129|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr3_-_94910641_94910756	0.268911	bHLH_family.p2	D86177|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK167816|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr11_+_69727693_69727762	0.268462	bHLH_family.p2	BC011317|Gps2|56310|G protein pathway suppressor 2	NM_019726|Gps2|56310|G protein pathway suppressor 2	BC138880|Gps2|56310|G protein pathway suppressor 2	BC138879|Gps2|56310|G protein pathway suppressor 2
mm9_v1_chr15_-_93167308_93167408	0.268377	bHLH_family.p2	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr9_+_77765170_77765271	0.268207	bHLH_family.p2	AK031743|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK162451|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	NM_134255|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK051580|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK045274|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085663|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085696|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK028761|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK167755|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168360|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK088153|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168987|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	BC022911|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm9_v1_chr1_-_33964439_33964706	0.268145	bHLH_family.p2	BC057378|Bend6|320705|BEN domain containing 6	NM_177235|Bend6|320705|BEN domain containing 6	AK134655|Bend6|320705|BEN domain containing 6	AK044633|Bend6|320705|BEN domain containing 6	BC042757|Bend6|320705|BEN domain containing 6
mm9_v1_chr17_-_27650285_27650347	0.267958	bHLH_family.p2	BC072635|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr17_+_84105481_84105596	0.267927	bHLH_family.p2	NM_001171052|Mta3|116871|metastasis associated 3	NM_001171053|Mta3|116871|metastasis associated 3	NM_001171054|Mta3|116871|metastasis associated 3	NM_054082|Mta3|116871|metastasis associated 3	BC022124|Mta3|116871|metastasis associated 3	AF288138|Mta3|116871|metastasis associated 3	AK146721|Mta3|116871|metastasis associated 3	AK146905|Mta3|116871|metastasis associated 3	AK147197|Mta3|116871|metastasis associated 3	AK154856|Mta3|116871|metastasis associated 3	AK158866|Mta3|116871|metastasis associated 3	AK129318|Mta3|116871|metastasis associated 3	AK145942|Mta3|116871|metastasis associated 3	BC099960|Mta3|116871|metastasis associated 3
mm9_v1_chr10_+_53316720_53316974	0.267564	bHLH_family.p2	AK010210|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	NM_025541|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK012376|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK031513|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK088618|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK007804|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	BC027628|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm9_v1_chr5_+_141083273_141083363	0.267345	bHLH_family.p2	BC138600|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC138601|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK004642|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK153283|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	NM_008494|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94351|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr14_-_99498905_99499000	0.266591	bHLH_family.p2	AK012840|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	BC027357|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	AK038313|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	NM_028315|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)
mm9_v1_chr7_+_134985435_134985552	0.266237	bHLH_family.p2	BC005791|Stx4a|20909|syntaxin 4A (placental)	U76832|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr15_+_59480204_59480213	0.266209	bHLH_family.p2	AK033358|Trib1|211770|tribbles homolog 1 (Drosophila)	AK028626|Trib1|211770|tribbles homolog 1 (Drosophila)	AK040738|Trib1|211770|tribbles homolog 1 (Drosophila)	AK041212|Trib1|211770|tribbles homolog 1 (Drosophila)	AK162876|Trib1|211770|tribbles homolog 1 (Drosophila)	NM_144549|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chr8_+_113245378_113245384	0.265026	bHLH_family.p2	BC060632|Mtss1l|244654|metastasis suppressor 1-like	NM_198625|Mtss1l|244654|metastasis suppressor 1-like
mm9_v1_chr1_+_10983542_10983609	0.264632	bHLH_family.p2	AK138884|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	AM109952|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	NM_029525|Prex2|109294|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm9_v1_chr11_+_5662121_5662197	0.264276	bHLH_family.p2	AK009198|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK005556|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK008730|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC052911|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC094935|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene
mm9_v1_chr5_+_108697913_108698008	0.264246	bHLH_family.p2	AK075713|Dr1|13486|down-regulator of transcription 1	NM_026106|Dr1|13486|down-regulator of transcription 1	AK144749|Dr1|13486|down-regulator of transcription 1	AK007230|Dr1|13486|down-regulator of transcription 1	AK090113|Dr1|13486|down-regulator of transcription 1	AK146573|Dr1|13486|down-regulator of transcription 1	AK031057|Dr1|13486|down-regulator of transcription 1	AK139866|Dr1|13486|down-regulator of transcription 1	AK018040|Dr1|13486|down-regulator of transcription 1
mm9_v1_chr7_-_26518101_26518140	0.263851	bHLH_family.p2	AK182216|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1
mm9_v1_chr18_-_78006524_78006535	0.263848	bHLH_family.p2	AK147599|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr1_-_39535525_39535591	0.263786	bHLH_family.p2	BC065081|Tbc1d8|54610|TBC1 domain family, member 8	AK141816|Tbc1d8|54610|TBC1 domain family, member 8	AK141520|Tbc1d8|54610|TBC1 domain family, member 8	AK138630|Tbc1d8|54610|TBC1 domain family, member 8	NM_018775|Tbc1d8|54610|TBC1 domain family, member 8
mm9_v1_chr18_+_4920537_4920702	0.263782	bHLH_family.p2	AK021019|Svil|225115|supervillin	AK041925|Svil|225115|supervillin	BC099602|Svil|225115|supervillin
mm9_v1_chr8_+_18595130_18595172	0.263345	bHLH_family.p2	AK083572|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK138858|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK042026|Mcph1|244329|microcephaly, primary autosomal recessive 1	BC056924|Mcph1|244329|microcephaly, primary autosomal recessive 1	NM_173189|Mcph1|244329|microcephaly, primary autosomal recessive 1
mm9_v1_chr2_+_52716901_52716906	0.262879	bHLH_family.p2	NM_172409|Fmnl2|71409|formin-like 2
mm9_v1_chr6_+_29417738_29417806	0.262594	bHLH_family.p2	AK152929|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK007327|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	NM_025381|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK003419|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152153|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152959|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F
mm9_v1_chr8_-_124956759_124956863	0.262562	bHLH_family.p2	M31775|Cyba|13057|cytochrome b-245, alpha polypeptide	EU791539|Cyba|13057|cytochrome b-245, alpha polypeptide	BC026791|Cyba|13057|cytochrome b-245, alpha polypeptide	AK018713|Cyba|13057|cytochrome b-245, alpha polypeptide	AK131580|Cyba|13057|cytochrome b-245, alpha polypeptide	AK171748|Cyba|13057|cytochrome b-245, alpha polypeptide	AK078854|Cyba|13057|cytochrome b-245, alpha polypeptide	AK021200|Cyba|13057|cytochrome b-245, alpha polypeptide	AK152414|Cyba|13057|cytochrome b-245, alpha polypeptide	NM_007806|Cyba|13057|cytochrome b-245, alpha polypeptide
mm9_v1_chr1_-_120950111_120950195	0.262432	bHLH_family.p2	BC085190|Gli2|14633|GLI-Kruppel family member GLI2	BC082604|Gli2|14633|GLI-Kruppel family member GLI2	NM_001081125|Gli2|14633|GLI-Kruppel family member GLI2
mm9_v1_chr5_+_31224206_31224267	0.262114	bHLH_family.p2	BC013464|Khk|16548|ketohexokinase	NM_008439|Khk|16548|ketohexokinase
mm9_v1_chr14_-_32454060_32454136	0.261712	bHLH_family.p2	BC021360|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK161488|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK005505|Hacl1|56794|2-hydroxyacyl-CoA lyase 1
mm9_v1_chr11_-_70817905_70817971	0.261594	bHLH_family.p2	BC027842|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	BC052172|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK035177|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	NM_178367|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK087592|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33
mm9_v1_chr4_-_131631150_131631223	0.260603	bHLH_family.p2	BC068138|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr10_-_62254998_62255005	0.260579	bHLH_family.p2	AF465615|Ccar1|67500|cell division cycle and apoptosis regulator 1	AK012111|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC060130|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC039939|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr11_+_59476016_59476061	0.260231	bHLH_family.p2	BC063067|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr7_-_59117613_59117656	0.260146	bHLH_family.p2	NM_001115087|Fancf|100040608|Fanconi anemia, complementation group F
mm9_v1_chrX_+_165474542_165474656	0.260048	bHLH_family.p2	AK047827|Arhgap6|11856|Rho GTPase activating protein 6	NM_178754|Arhgap6|11856|Rho GTPase activating protein 6	AK077996|Arhgap6|11856|Rho GTPase activating protein 6	AK048507|Arhgap6|11856|Rho GTPase activating protein 6	AK048162|Arhgap6|11856|Rho GTPase activating protein 6	AK170575|Arhgap6|11856|Rho GTPase activating protein 6	AK079651|Arhgap6|11856|Rho GTPase activating protein 6	AK171337|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr19_-_4615460_4615508	0.259756	bHLH_family.p2	AK081560|Lrfn4|225875|leucine rich repeat and fibronectin type III domain containing 4
mm9_v1_chr5_-_113709569_113709620	0.25958	bHLH_family.p2	AK167632|Sgsm1|52850|small G protein signaling modulator 1	AK010756|Sgsm1|52850|small G protein signaling modulator 1	AK051018|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr9_-_41932211_41932212	0.25929	bHLH_family.p2	AK155045|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr3_+_104583973_104584035	0.258557	bHLH_family.p2	AY184802|Ppm1j|71887|protein phosphatase 1J	NM_027982|Ppm1j|71887|protein phosphatase 1J	BC117498|Ppm1j|71887|protein phosphatase 1J	BC121788|Ppm1j|71887|protein phosphatase 1J	AK009235|Ppm1j|71887|protein phosphatase 1J
mm9_v1_chr7_-_30066867_30066892	0.258462	bHLH_family.p2	BC026419|Spint2|20733|serine protease inhibitor, Kunitz type 2
mm9_v1_chr11_-_72225084_72225217	0.258027	bHLH_family.p2	AK085988|Smtnl2|276829|smoothelin-like 2	BC037993|Smtnl2|276829|smoothelin-like 2	AK051585|Smtnl2|276829|smoothelin-like 2	NM_177776|Smtnl2|276829|smoothelin-like 2
mm9_v1_chr11_+_40547368_40547508	0.257306	bHLH_family.p2	AK031779|Nudcd2|52653|NudC domain containing 2	AK012388|Nudcd2|52653|NudC domain containing 2	BC005646|Nudcd2|52653|NudC domain containing 2
mm9_v1_chr9_-_58160063_58160199	0.256072	bHLH_family.p2	BC003973|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr18_-_66162268_66162297	0.255205	bHLH_family.p2	AK170799|Lman1|70361|lectin, mannose-binding, 1	AK011495|Lman1|70361|lectin, mannose-binding, 1	AK151599|Lman1|70361|lectin, mannose-binding, 1	AK151949|Lman1|70361|lectin, mannose-binding, 1	AK153554|Lman1|70361|lectin, mannose-binding, 1	NM_001172062|Lman1|70361|lectin, mannose-binding, 1	NM_027400|Lman1|70361|lectin, mannose-binding, 1
mm9_v1_chr9_+_14589122_14589203	0.254148	bHLH_family.p2	AK141214|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	BC065144|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	NM_018736|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK041248|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)
mm9_v1_chr3_+_137940608_137940618	0.25372	bHLH_family.p2	AK146094|Adh1|11522|alcohol dehydrogenase 1 (class I)	BC013477|Adh1|11522|alcohol dehydrogenase 1 (class I)	NM_007409|Adh1|11522|alcohol dehydrogenase 1 (class I)
mm9_v1_chr14_+_28149221_28149270	0.25368	bHLH_family.p2	BC005517|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	BC012262|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr10_+_87323855_87324094	0.253616	bHLH_family.p2	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr10_-_61912352_61912501	0.252909	bHLH_family.p2	AK031911|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	BC049796|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	NM_181423|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	AJ968954|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)	AK143755|Supv3l1|338359|suppressor of var1, 3-like 1 (S. cerevisiae)
mm9_v1_chr4_+_115511802_115511871	0.252757	bHLH_family.p2	AK141298|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK010697|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK169982|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	Y11091|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK155934|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	NM_021461|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	BC021369|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1
mm9_v1_chr18_+_58819093_58819192	0.252384	bHLH_family.p2	AK165542|Isoc1|66307|isochorismatase domain containing 1	BC016576|Isoc1|66307|isochorismatase domain containing 1	AY035213|Isoc1|66307|isochorismatase domain containing 1	NM_025478|Isoc1|66307|isochorismatase domain containing 1	AK134794|Isoc1|66307|isochorismatase domain containing 1	AK152763|Isoc1|66307|isochorismatase domain containing 1	AK153257|Isoc1|66307|isochorismatase domain containing 1
mm9_v1_chr14_+_55082960_55083081	0.251897	bHLH_family.p2	AK144035|Lrp10|65107|low-density lipoprotein receptor-related protein 10	NM_022993|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AK132169|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AK170325|Lrp10|65107|low-density lipoprotein receptor-related protein 10	BC052378|Lrp10|65107|low-density lipoprotein receptor-related protein 10	BC054447|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AB042200|Lrp10|65107|low-density lipoprotein receptor-related protein 10
mm9_v1_chr9_+_82723410_82723412	0.251618	bHLH_family.p2	AK020170|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	NM_001168240|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	NM_022986|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr2_-_29949088_29949167	0.250842	bHLH_family.p2	AK004475|Zdhhc12|66220|zinc finger, DHHC domain containing 12	BC021432|Zdhhc12|66220|zinc finger, DHHC domain containing 12	AK013074|Zdhhc12|66220|zinc finger, DHHC domain containing 12	NM_001037762|Zdhhc12|66220|zinc finger, DHHC domain containing 12	NM_025428|Zdhhc12|66220|zinc finger, DHHC domain containing 12	AK087676|Zdhhc12|66220|zinc finger, DHHC domain containing 12
mm9_v1_chr17_+_71532875_71532951	0.250801	bHLH_family.p2	AK033662|Lpin2|64898|lipin 2
mm9_v1_chr3_-_137644466_137644512	0.2508	bHLH_family.p2	AF163255|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK145745|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK146180|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AF186023|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK079794|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK169584|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	BC014759|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	NM_011932|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1
mm9_v1_chr2_+_112106470_112106612	0.250675	bHLH_family.p2	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr5_+_74591290_74591333	0.250665	bHLH_family.p2	BC008101|Rasl11b|68939|RAS-like, family 11, member B
mm9_v1_chr19_+_10599708_10599823	0.250615	bHLH_family.p2	NM_001164272|Cpsf7|269061|cleavage and polyadenylation specific factor 7	NM_172302|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK044306|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK053375|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK088603|Cpsf7|269061|cleavage and polyadenylation specific factor 7	AK165330|Cpsf7|269061|cleavage and polyadenylation specific factor 7
mm9_v1_chr4_-_43059017_43059097	0.249655	bHLH_family.p2	AK161380|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene	AK045811|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene	NM_172691|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene	BC054736|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene
mm9_v1_chr10_+_78037170_78037331	0.2488	bHLH_family.p2	NM_173751|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	BC056459|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	BC052054|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like
mm9_v1_chr1_+_24685711_24685764	0.248337	bHLH_family.p2	AK158982|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr1_+_157005804_157006022	0.247557	bHLH_family.p2	NM_021433|Stx6|58244|syntaxin 6	AK018167|Stx6|58244|syntaxin 6	AK031673|Stx6|58244|syntaxin 6	AK159392|Stx6|58244|syntaxin 6	AK019106|Stx6|58244|syntaxin 6	AK044905|Stx6|58244|syntaxin 6	AK049124|Stx6|58244|syntaxin 6	AK009690|Stx6|58244|syntaxin 6	AK151549|Stx6|58244|syntaxin 6	BC029205|Stx6|58244|syntaxin 6	AF237814|Stx6|58244|syntaxin 6
mm9_v1_chr3_-_94910786_94910815	0.247493	bHLH_family.p2	AK158062|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK098097|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK150898|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	AK151984|Pip5k1a|18720|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm9_v1_chr3_-_58496285_58496330	0.247243	bHLH_family.p2	AK139626|Siah2|20439|seven in absentia 2	BC058400|Siah2|20439|seven in absentia 2	NM_009174|Siah2|20439|seven in absentia 2	AK149316|Siah2|20439|seven in absentia 2
mm9_v1_chr1_-_53009546_53009683	0.246932	bHLH_family.p2	AK010944|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	AK010796|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	NM_144953|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene
mm9_v1_chr6_-_8728481_8728486	0.24646	bHLH_family.p2	AK005965|Ica1|15893|islet cell autoantigen 1	NM_010492|Ica1|15893|islet cell autoantigen 1	AK016989|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr4_+_88783273_88783343	0.245902	bHLH_family.p2	AK167319|Mtap|66902|methylthioadenosine phosphorylase	NM_024433|Mtap|66902|methylthioadenosine phosphorylase	AK005064|Mtap|66902|methylthioadenosine phosphorylase	AK011421|Mtap|66902|methylthioadenosine phosphorylase	BC003858|Mtap|66902|methylthioadenosine phosphorylase	AK089916|Mtap|66902|methylthioadenosine phosphorylase
mm9_v1_chr8_-_83262881_83263070	0.245694	bHLH_family.p2	AF325921|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	BC009130|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	AF375046|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm9_v1_chr11_-_90252208_90252214	0.245105	bHLH_family.p2	BC058705|Hlf|217082|hepatic leukemia factor
mm9_v1_chr16_-_91647153_91647201	0.244835	bHLH_family.p2	AK146478|Gart|14450|phosphoribosylglycinamide formyltransferase	BC070465|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168876|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168445|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168864|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168458|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168501|Gart|14450|phosphoribosylglycinamide formyltransferase	U01023|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168724|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168796|Gart|14450|phosphoribosylglycinamide formyltransferase	AK146355|Gart|14450|phosphoribosylglycinamide formyltransferase
mm9_v1_chr10_+_68675404_68675423	0.244803	bHLH_family.p2	AK034826|Rhobtb1|69288|Rho-related BTB domain containing 1	NM_001081347|Rhobtb1|69288|Rho-related BTB domain containing 1	BC099973|Rhobtb1|69288|Rho-related BTB domain containing 1
mm9_v1_chr1_+_187186933_187187054	0.244745	bHLH_family.p2	AK088974|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK160986|Eprs|107508|glutamyl-prolyl-tRNA synthetase	NM_029735|Eprs|107508|glutamyl-prolyl-tRNA synthetase	BC040802|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK010734|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK147995|Eprs|107508|glutamyl-prolyl-tRNA synthetase	AK148463|Eprs|107508|glutamyl-prolyl-tRNA synthetase	BC058337|Eprs|107508|glutamyl-prolyl-tRNA synthetase	BC141049|Eprs|107508|glutamyl-prolyl-tRNA synthetase
mm9_v1_chr5_+_89149887_89150001	0.24396	bHLH_family.p2	AK045695|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK162120|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	NM_026735|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK150016|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK077320|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK172291|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104402|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104403|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK003346|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)
mm9_v1_chr10_-_79896086_79896137	0.243472	bHLH_family.p2	AF352579|Tcf3|21423|transcription factor 3
mm9_v1_chr3_-_141645214_141645214	0.243205	bHLH_family.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr11_+_95198329_95198359	0.243023	bHLH_family.p2	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr11_+_11586215_11586246	0.242514	bHLH_family.p2	NM_001025597|Ikzf1|22778|IKAROS family zinc finger 1	NM_009578|Ikzf1|22778|IKAROS family zinc finger 1	AK036833|Ikzf1|22778|IKAROS family zinc finger 1	AK040268|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chr1_+_182872588_182872655	0.242503	bHLH_family.p2	AK144899|Tmem63a|208795|transmembrane protein 63a	AK170559|Tmem63a|208795|transmembrane protein 63a	BC019442|Tmem63a|208795|transmembrane protein 63a	NM_144794|Tmem63a|208795|transmembrane protein 63a	AK049360|Tmem63a|208795|transmembrane protein 63a	AK173027|Tmem63a|208795|transmembrane protein 63a
mm9_v1_chr7_+_87377748_87377824	0.24233	bHLH_family.p2	AK166345|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK143704|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK085577|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK086166|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	NM_178752|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK084531|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	BC037479|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene
mm9_v1_chr1_-_190831705_190831735	0.242067	bHLH_family.p2	BC079581|Kctd3|226823|potassium channel tetramerisation domain containing 3	BC061458|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK049362|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK034380|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK087865|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK139700|Kctd3|226823|potassium channel tetramerisation domain containing 3	NM_172650|Kctd3|226823|potassium channel tetramerisation domain containing 3	AK033491|Kctd3|226823|potassium channel tetramerisation domain containing 3
mm9_v1_chr5_+_37729712_37729738	0.242025	bHLH_family.p2	NM_145920|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)	AK134298|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)	BC064473|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)
mm9_v1_chr17_-_81464406_81464435	0.241759	bHLH_family.p2	AK012806|Thumpd2|72167|THUMP domain containing 2	NM_028138|Thumpd2|72167|THUMP domain containing 2
mm9_v1_chr15_-_81560309_81560370	0.240998	bHLH_family.p2	AK035571|Rangap1|19387|RAN GTPase activating protein 1	AK042930|Rangap1|19387|RAN GTPase activating protein 1	AK133905|Rangap1|19387|RAN GTPase activating protein 1	AK159525|Rangap1|19387|RAN GTPase activating protein 1	BC066213|Rangap1|19387|RAN GTPase activating protein 1	U08110|Rangap1|19387|RAN GTPase activating protein 1	NM_001146174|Rangap1|19387|RAN GTPase activating protein 1	NM_011241|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr14_-_65568677_65568719	0.240916	bHLH_family.p2	AK089782|Hmbox1|219150|homeobox containing 1	AK161592|Hmbox1|219150|homeobox containing 1	NM_177338|Hmbox1|219150|homeobox containing 1	BC051457|Hmbox1|219150|homeobox containing 1	AK052729|Hmbox1|219150|homeobox containing 1
mm9_v1_chr16_-_78576873_78576891	0.240895	bHLH_family.p2	AK005829|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	BC019957|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr16_-_94591826_94592078	0.240794	bHLH_family.p2	AF216308|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	BC061117|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159619|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159620|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	AF216307|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr5_+_32438843_32438906	0.240146	bHLH_family.p2	NM_008037|Fosl2|14284|fos-like antigen 2	BC065131|Fosl2|14284|fos-like antigen 2
mm9_v1_chr10_-_79785786_79785871	0.239811	bHLH_family.p2	BC052535|Pcsk4|18551|proprotein convertase subtilisin/kexin type 4
mm9_v1_chr11_-_78364173_78364273	0.239806	bHLH_family.p2	BC093511|Tmem97|69071|transmembrane protein 97	AK171954|Tmem97|69071|transmembrane protein 97	BC018156|Tmem97|69071|transmembrane protein 97	NM_133706|Tmem97|69071|transmembrane protein 97	AK155107|Tmem97|69071|transmembrane protein 97
mm9_v1_chr1_-_17087821_17087878	0.239118	bHLH_family.p2	AB024445|Jph1|57339|junctophilin 1	NM_020604|Jph1|57339|junctophilin 1
mm9_v1_chr14_+_56109905_56110009	0.239082	bHLH_family.p2	AK148355|Lrrc16b|268747|leucine rich repeat containing 16B	NM_001024645|Lrrc16b|268747|leucine rich repeat containing 16B	BC092223|Lrrc16b|268747|leucine rich repeat containing 16B	BC082805|Lrrc16b|268747|leucine rich repeat containing 16B
mm9_v1_chr2_-_146337646_146337787	0.238976	bHLH_family.p2	AK038838|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151040|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	BC151041|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	AK157932|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)	NM_001033348|Ralgapa2|241694|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm9_v1_chr4_+_129013245_129013310	0.238577	bHLH_family.p2	BC094629|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK132279|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC046825|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK008007|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC125606|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC125608|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	NM_025970|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK007377|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AY071852|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC026442|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC037657|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand
mm9_v1_chr15_-_81560302_81560307	0.238268	bHLH_family.p2	AK159930|Rangap1|19387|RAN GTPase activating protein 1	BC014855|Rangap1|19387|RAN GTPase activating protein 1	AK146670|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr2_+_83484743_83484852	0.238206	bHLH_family.p2	BC058229|Zc3h15|69082|zinc finger CCCH-type containing 15	AK218793|Zc3h15|69082|zinc finger CCCH-type containing 15
mm9_v1_chr4_+_140703825_140703842	0.237484	bHLH_family.p2	NM_172518|Fbxo42|213499|F-box protein 42
mm9_v1_chr2_-_48804794_48804803	0.237028	bHLH_family.p2	AK145454|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr11_-_95171479_95171519	0.23654	bHLH_family.p2	AK169458|Myst2|217127|MYST histone acetyltransferase 2	BC057102|Myst2|217127|MYST histone acetyltransferase 2	DQ076247|Myst2|217127|MYST histone acetyltransferase 2	AK160750|Myst2|217127|MYST histone acetyltransferase 2	AK170389|Myst2|217127|MYST histone acetyltransferase 2	BC048904|Myst2|217127|MYST histone acetyltransferase 2	AK164336|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr1_-_59176583_59176664	0.236199	bHLH_family.p2	AK170118|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK167733|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001037812|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr16_+_33062606_33062616	0.236038	bHLH_family.p2	AK030463|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC111899|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	BC112428|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)	NM_172823|Lmln|239833|leishmanolysin-like (metallopeptidase M8 family)
mm9_v1_chr9_+_111214242_111214242	0.235146	bHLH_family.p2	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr2_-_118982691_118982711	0.234987	bHLH_family.p2	AK004786|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr10_+_43988192_43988362	0.234968	bHLH_family.p2	BC002166|Atg5|11793|autophagy-related 5 (yeast)
mm9_v1_chr1_+_55144949_55145013	0.23462	bHLH_family.p2	NM_008303|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr18_-_66451420_66451491	0.234566	bHLH_family.p2	AK039742|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC103803|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC152322|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK220435|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK035153|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK028377|Ccbe1|320924|collagen and calcium binding EGF domains 1	NM_178793|Ccbe1|320924|collagen and calcium binding EGF domains 1
mm9_v1_chr19_+_54119671_54119753	0.233618	bHLH_family.p2	NM_007417|Adra2a|11551|adrenergic receptor, alpha 2a	AK141573|Adra2a|11551|adrenergic receptor, alpha 2a	AK140461|Adra2a|11551|adrenergic receptor, alpha 2a	AK046802|Adra2a|11551|adrenergic receptor, alpha 2a
mm9_v1_chr10_-_61693963_61693977	0.233564	bHLH_family.p2	AK012471|Tspan15|70423|tetraspanin 15	NM_197996|Tspan15|70423|tetraspanin 15	AK172169|Tspan15|70423|tetraspanin 15
mm9_v1_chr1_+_140860285_140860402	0.233553	bHLH_family.p2	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr10_-_70807521_70807640	0.233452	bHLH_family.p2	AK131605|Cisd1|52637|CDGSH iron sulfur domain 1	AK167898|Cisd1|52637|CDGSH iron sulfur domain 1	BC013522|Cisd1|52637|CDGSH iron sulfur domain 1	AK131595|Cisd1|52637|CDGSH iron sulfur domain 1	AK075907|Cisd1|52637|CDGSH iron sulfur domain 1	NM_134007|Cisd1|52637|CDGSH iron sulfur domain 1	AK131812|Cisd1|52637|CDGSH iron sulfur domain 1	AK131995|Cisd1|52637|CDGSH iron sulfur domain 1	BC019860|Cisd1|52637|CDGSH iron sulfur domain 1	BC021952|Cisd1|52637|CDGSH iron sulfur domain 1
mm9_v1_chr7_+_4828711_4828754	0.233283	bHLH_family.p2	BC158139|Isoc2a|664994|isochorismatase domain containing 2a
mm9_v1_chr5_+_120566489_120566582	0.233127	bHLH_family.p2	AK146493|Rbm19|74111|RNA binding motif protein 19	AK053511|Rbm19|74111|RNA binding motif protein 19	BC025619|Rbm19|74111|RNA binding motif protein 19	NM_028762|Rbm19|74111|RNA binding motif protein 19	AK167100|Rbm19|74111|RNA binding motif protein 19	BC034010|Rbm19|74111|RNA binding motif protein 19
mm9_v1_chr15_-_51697041_51697058	0.233105	bHLH_family.p2	AK168123|Eif3h|68135|eukaryotic translation initiation factor 3, subunit H
mm9_v1_chr14_+_79880952_79881000	0.233103	bHLH_family.p2	BC057134|Elf1|13709|E74-like factor 1	NM_007920|Elf1|13709|E74-like factor 1
mm9_v1_chr17_-_46888942_46888996	0.232696	bHLH_family.p2	AK220209|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK031742|Cnpy3|72029|canopy 3 homolog (zebrafish)
mm9_v1_chr5_-_72049058_72049225	0.232643	bHLH_family.p2	AK079551|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK043806|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK137354|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK162893|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	BC094603|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK139970|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr4_+_97439119_97439136	0.232321	bHLH_family.p2	AK161966|A130013F12Rik|320308|RIKEN cDNA A130013F12 gene
mm9_v1_chr11_+_120094240_120094260	0.232144	bHLH_family.p2	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr10_-_44178474_44178587	0.23207	bHLH_family.p2	AK133503|Prdm1|12142|PR domain containing 1, with ZNF domain	BC129801|Prdm1|12142|PR domain containing 1, with ZNF domain	NM_007548|Prdm1|12142|PR domain containing 1, with ZNF domain	U08185|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr13_-_12199109_12199211	0.232059	bHLH_family.p2	BC043140|Ryr2|20191|ryanodine receptor 2, cardiac	BC059061|Ryr2|20191|ryanodine receptor 2, cardiac	NM_023868|Ryr2|20191|ryanodine receptor 2, cardiac
mm9_v1_chr6_-_124414668_124414803	0.231539	bHLH_family.p2	AJ278486|Clstn3|232370|calsyntenin 3	BC055054|Clstn3|232370|calsyntenin 3	AK032336|Clstn3|232370|calsyntenin 3	NM_153508|Clstn3|232370|calsyntenin 3
mm9_v1_chr3_+_87710187_87710249	0.230287	bHLH_family.p2	NM_008231|Hdgf|15191|hepatoma-derived growth factor
mm9_v1_chr5_+_125956221_125956249	0.229924	bHLH_family.p2	AK019063|Aacs|78894|acetoacetyl-CoA synthetase	AK044017|Aacs|78894|acetoacetyl-CoA synthetase	AK147189|Aacs|78894|acetoacetyl-CoA synthetase	AK150266|Aacs|78894|acetoacetyl-CoA synthetase	AK165418|Aacs|78894|acetoacetyl-CoA synthetase	AK165457|Aacs|78894|acetoacetyl-CoA synthetase	AK170120|Aacs|78894|acetoacetyl-CoA synthetase	AK170653|Aacs|78894|acetoacetyl-CoA synthetase	AK170856|Aacs|78894|acetoacetyl-CoA synthetase	NM_030210|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr7_-_106289635_106289638	0.229877	bHLH_family.p2	AK044129|Uvrag|78610|UV radiation resistance associated gene	AK089900|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr14_+_21522248_21522292	0.229666	bHLH_family.p2	NM_025366|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC052720|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC064310|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	AK027907|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC049582|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	BC092216|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	AK003263|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1	AK011261|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1
mm9_v1_chr3_-_120965803_120965917	0.229018	bHLH_family.p2	AK147601|Tmem56|99887|transmembrane protein 56
mm9_v1_chr2_+_30808463_30808542	0.228956	bHLH_family.p2	AK054404|Tor1b|30934|torsin family 1, member B	AK169692|Tor1b|30934|torsin family 1, member B	AK017290|Tor1b|30934|torsin family 1, member B	AK149754|Tor1b|30934|torsin family 1, member B	AJ297743|Tor1b|30934|torsin family 1, member B	NM_133673|Tor1b|30934|torsin family 1, member B	BC018456|Tor1b|30934|torsin family 1, member B	AK159843|Tor1b|30934|torsin family 1, member B
mm9_v1_chr7_+_128061297_128061331	0.228753	bHLH_family.p2	AK012184|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK144721|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK146279|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK159723|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC037637|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC028924|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr5_-_111209468_111209636	0.228544	bHLH_family.p2	BC021446|Pus1|56361|pseudouridine synthase 1	BC034359|Pus1|56361|pseudouridine synthase 1	AB041563|Pus1|56361|pseudouridine synthase 1	AK089258|Pus1|56361|pseudouridine synthase 1	NM_001025561|Pus1|56361|pseudouridine synthase 1	NM_019700|Pus1|56361|pseudouridine synthase 1	NM_001025562|Pus1|56361|pseudouridine synthase 1	AK161521|Pus1|56361|pseudouridine synthase 1
mm9_v1_chr10_-_77632399_77632581	0.22831	bHLH_family.p2	BC013475|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	AK003866|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	NM_138601|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed
mm9_v1_chr18_-_73975022_73975140	0.227937	bHLH_family.p2	BC004709|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	NM_145494|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK043103|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK171157|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK042289|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK039906|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK050933|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK050980|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK077746|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK156403|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK080403|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK162126|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial
mm9_v1_chr2_-_165710128_165710217	0.227883	bHLH_family.p2	AK038961|Zmynd8|228880|zinc finger, MYND-type containing 8	AK155864|Zmynd8|228880|zinc finger, MYND-type containing 8	BC048186|Zmynd8|228880|zinc finger, MYND-type containing 8	NM_027230|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr15_-_79517827_79517983	0.227867	bHLH_family.p2	AK209570|Josd1|74158|Josephin domain containing 1
mm9_v1_chr18_+_12492494_12492679	0.227228	bHLH_family.p2	AJ293592|Lama3|16774|laminin, alpha 3	NM_010680|Lama3|16774|laminin, alpha 3	U88353|Lama3|16774|laminin, alpha 3
mm9_v1_chr7_-_133935662_133935720	0.227023	bHLH_family.p2	AK144244|Ppp4c|56420|protein phosphatase 4, catalytic subunit
mm9_v1_chr18_+_67934517_67934670	0.226418	bHLH_family.p2	AK143727|Seh1l|72124|SEH1-like (S. cerevisiae	NM_001039088|Seh1l|72124|SEH1-like (S. cerevisiae	NM_028112|Seh1l|72124|SEH1-like (S. cerevisiae	AK170591|Seh1l|72124|SEH1-like (S. cerevisiae	BC027244|Seh1l|72124|SEH1-like (S. cerevisiae	AK011330|Seh1l|72124|SEH1-like (S. cerevisiae	AK169231|Seh1l|72124|SEH1-like (S. cerevisiae	AK169388|Seh1l|72124|SEH1-like (S. cerevisiae	AK088835|Seh1l|72124|SEH1-like (S. cerevisiae	AK166573|Seh1l|72124|SEH1-like (S. cerevisiae
mm9_v1_chr9_+_4376532_4376599	0.226134	bHLH_family.p2	AK032884|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	AK020232|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	AK132023|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene
mm9_v1_chr19_-_53465036_53465068	0.22599	bHLH_family.p2	AK168575|Smndc1|76479|survival motor neuron domain containing 1	BC058779|Smndc1|76479|survival motor neuron domain containing 1	AK010395|Smndc1|76479|survival motor neuron domain containing 1	AK078834|Smndc1|76479|survival motor neuron domain containing 1	AK090047|Smndc1|76479|survival motor neuron domain containing 1	NM_172429|Smndc1|76479|survival motor neuron domain containing 1
mm9_v1_chr17_+_23957239_23957390	0.225539	bHLH_family.p2	BC027781|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr17_+_57201623_57201743	0.225445	bHLH_family.p2	AK077528|Crb3|224912|crumbs homolog 3 (Drosophila)	AK167279|Crb3|224912|crumbs homolog 3 (Drosophila)	BC024462|Crb3|224912|crumbs homolog 3 (Drosophila)	NM_177638|Crb3|224912|crumbs homolog 3 (Drosophila)
mm9_v1_chr8_+_122638031_122638087	0.224746	bHLH_family.p2	AK032447|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK046401|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK051096|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_001163761|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_001163762|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_172286|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK133157|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK172108|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK122299|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene
mm9_v1_chr6_+_57530968_57531087	0.22457	bHLH_family.p2	NM_025992|Herc6|67138|hect domain and RLD 6	AK149648|Herc6|67138|hect domain and RLD 6	AK147960|Herc6|67138|hect domain and RLD 6	AK011047|Herc6|67138|hect domain and RLD 6
mm9_v1_chr6_-_87761537_87761854	0.2245	bHLH_family.p2	AB232640|Rab43|69834|RAB43, member RAS oncogene family	AJ534465|Rab43|69834|RAB43, member RAS oncogene family	AK010874|Rab43|69834|RAB43, member RAS oncogene family	AK158283|Rab43|69834|RAB43, member RAS oncogene family	NM_001039394|Rab43|69834|RAB43, member RAS oncogene family
mm9_v1_chr2_+_83652779_83652844	0.22441	bHLH_family.p2	AK038899|Fam171b|241520|family with sequence similarity 171, member B
mm9_v1_chr9_+_21528037_21528221	0.223769	bHLH_family.p2	NM_010700|Ldlr|16835|low density lipoprotein receptor	AK076243|Ldlr|16835|low density lipoprotein receptor	AK151968|Ldlr|16835|low density lipoprotein receptor	BC053041|Ldlr|16835|low density lipoprotein receptor	AK170264|Ldlr|16835|low density lipoprotein receptor	AK149950|Ldlr|16835|low density lipoprotein receptor	AK160006|Ldlr|16835|low density lipoprotein receptor	AK161104|Ldlr|16835|low density lipoprotein receptor	AK166466|Ldlr|16835|low density lipoprotein receptor	AK018697|Ldlr|16835|low density lipoprotein receptor	AK152103|Ldlr|16835|low density lipoprotein receptor	X64414|Ldlr|16835|low density lipoprotein receptor	BC019207|Ldlr|16835|low density lipoprotein receptor	AK184620|Ldlr|16835|low density lipoprotein receptor	AF425607|Ldlr|16835|low density lipoprotein receptor	Z19521|Ldlr|16835|low density lipoprotein receptor
mm9_v1_chr7_-_104886507_104886549	0.223603	bHLH_family.p2	AB028148|Aqp11|66333|aquaporin 11	AK040045|Aqp11|66333|aquaporin 11	BC037088|Aqp11|66333|aquaporin 11	BC068103|Aqp11|66333|aquaporin 11
mm9_v1_chr8_+_128822478_128822500	0.223527	bHLH_family.p2	NM_175434|Slc35f3|210027|solute carrier family 35, member F3	AK046359|Slc35f3|210027|solute carrier family 35, member F3
mm9_v1_chr11_-_49488485_49488495	0.223073	bHLH_family.p2	AK039164|Cnot6|104625|CCR4-NOT transcription complex, subunit 6	AK169707|Cnot6|104625|CCR4-NOT transcription complex, subunit 6
mm9_v1_chr4_+_131830270_131830384	0.222987	bHLH_family.p2	AK132927|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_025579|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK007811|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK013133|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC019668|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK139748|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr5_+_114581164_114581232	0.222759	bHLH_family.p2	NM_011677|Ung|22256|uracil DNA glycosylase	X99018|Ung|22256|uracil DNA glycosylase	U55041|Ung|22256|uracil DNA glycosylase	AK168709|Ung|22256|uracil DNA glycosylase	AK168785|Ung|22256|uracil DNA glycosylase	BC052853|Ung|22256|uracil DNA glycosylase
mm9_v1_chr1_-_34899788_34899793	0.222286	bHLH_family.p2	AK144298|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr9_-_103382586_103382657	0.222069	bHLH_family.p2	AK134810|Bfsp2|107993|beaded filament structural protein 2, phakinin	BC068172|Bfsp2|107993|beaded filament structural protein 2, phakinin	NM_001002896|Bfsp2|107993|beaded filament structural protein 2, phakinin
mm9_v1_chr2_+_152857587_152857587	0.222008	bHLH_family.p2	AY534253|Xkr7|228787|X Kell blood group precursor related family member 7 homolog	NM_001011732|Xkr7|228787|X Kell blood group precursor related family member 7 homolog
mm9_v1_chr5_-_34125322_34125413	0.221631	bHLH_family.p2	BC023862|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AF061026|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061690|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	NM_019694|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC046326|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC055865|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AB041582|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061115|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AK133849|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr7_+_4877386_4877447	0.221346	bHLH_family.p2	AK165666|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	AK079906|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	EU850434|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	NM_173008|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene	BC141044|A430110N23Rik|269855|RIKEN cDNA A430110N23 gene
mm9_v1_chr15_+_78813475_78813522	0.221079	bHLH_family.p2	NM_001024716|Triobp|110253|TRIO and F-actin binding protein	BC053329|Triobp|110253|TRIO and F-actin binding protein	AK085512|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr4_-_41450064_41450152	0.220949	bHLH_family.p2	BC137640|AI464131|329828|expressed sequence AI464131	BC140956|AI464131|329828|expressed sequence AI464131	AK173117|AI464131|329828|expressed sequence AI464131	NM_001085515|AI464131|329828|expressed sequence AI464131
mm9_v1_chr1_+_180117547_180117811	0.220538	bHLH_family.p2	AK029574|Pppde1|78825|PPPDE peptidase domain containing 1	NM_024282|Pppde1|78825|PPPDE peptidase domain containing 1	AK020014|Pppde1|78825|PPPDE peptidase domain containing 1	AK049579|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr5_+_34339258_34339295	0.220036	bHLH_family.p2	AK147703|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr19_-_7070522_7070538	0.219924	bHLH_family.p2	AK002252|Nudt22|68323|nudix (nucleoside diphosphate linked moiety X)-type motif 22	NM_026675|Nudt22|68323|nudix (nucleoside diphosphate linked moiety X)-type motif 22
mm9_v1_chr9_+_20692618_20692740	0.219668	bHLH_family.p2	NM_145610|Ppan|235036|peter pan homolog (Drosophila)	BC014688|Ppan|235036|peter pan homolog (Drosophila)	AK085695|Ppan|235036|peter pan homolog (Drosophila)	AK039027|Ppan|235036|peter pan homolog (Drosophila)	AK172615|Ppan|235036|peter pan homolog (Drosophila)	AK171672|Ppan|235036|peter pan homolog (Drosophila)	BC059277|Ppan|235036|peter pan homolog (Drosophila)
mm9_v1_chr17_-_84586361_84586476	0.219661	bHLH_family.p2	M58564|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr11_-_53293696_53293735	0.219492	bHLH_family.p2	NM_183173|Ankrd43|237761|ankyrin repeat domain 43
mm9_v1_chr2_-_148233681_148233851	0.219237	bHLH_family.p2	CT010375|Thbd|21824|thrombomodulin	BC019154|Thbd|21824|thrombomodulin	X14432|Thbd|21824|thrombomodulin
mm9_v1_chr19_-_16855260_16855431	0.218969	bHLH_family.p2	AB281691|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AB281690|Vps13a|271564|vacuolar protein sorting 13A (yeast)	BC145012|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK052697|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AB281689|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK041811|Vps13a|271564|vacuolar protein sorting 13A (yeast)	BC027255|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AB115421|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK140793|Vps13a|271564|vacuolar protein sorting 13A (yeast)	NM_173028|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK165475|Vps13a|271564|vacuolar protein sorting 13A (yeast)
mm9_v1_chr15_+_97794629_97794751	0.218206	bHLH_family.p2	AK134684|Tmem106c|380967|transmembrane protein 106C	BC046621|Tmem106c|380967|transmembrane protein 106C	NM_201359|Tmem106c|380967|transmembrane protein 106C
mm9_v1_chr3_-_142058569_142058593	0.21751	bHLH_family.p2	AK009464|Pdlim5|56376|PDZ and LIM domain 5	AB016586|Pdlim5|56376|PDZ and LIM domain 5	AB016588|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr18_+_36440748_36440822	0.217474	bHLH_family.p2	NM_008989|Pura|19290|purine rich element binding protein A	U02098|Pura|19290|purine rich element binding protein A
mm9_v1_chr14_+_122506301_122506307	0.217369	bHLH_family.p2	AK075720|Tm9sf2|68059|transmembrane 9 superfamily member 2	NM_080556|Tm9sf2|68059|transmembrane 9 superfamily member 2
mm9_v1_chr13_-_101500801_101500875	0.217237	bHLH_family.p2	AK145759|Cdk7|12572|cyclin-dependent kinase 7	U11822|Cdk7|12572|cyclin-dependent kinase 7	BC141043|Cdk7|12572|cyclin-dependent kinase 7	BC004605|Cdk7|12572|cyclin-dependent kinase 7
mm9_v1_chr13_+_73468441_73468488	0.216986	bHLH_family.p2	AK160778|Mrpl36|94066|mitochondrial ribosomal protein L36	BC009166|Mrpl36|94066|mitochondrial ribosomal protein L36	NM_053163|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131597|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131601|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131604|Mrpl36|94066|mitochondrial ribosomal protein L36	AK075780|Mrpl36|94066|mitochondrial ribosomal protein L36	AB049655|Mrpl36|94066|mitochondrial ribosomal protein L36
mm9_v1_chr2_+_32817189_32817274	0.216959	bHLH_family.p2	AK167761|Rpl12|269261|ribosomal protein L12	NM_009076|Rpl12|269261|ribosomal protein L12	AK002973|Rpl12|269261|ribosomal protein L12	AK008347|Rpl12|269261|ribosomal protein L12	AK012349|Rpl12|269261|ribosomal protein L12	AK088464|Rpl12|269261|ribosomal protein L12	AK144905|Rpl12|269261|ribosomal protein L12	AK151532|Rpl12|269261|ribosomal protein L12	AK151592|Rpl12|269261|ribosomal protein L12	AK168121|Rpl12|269261|ribosomal protein L12	AK012428|Rpl12|269261|ribosomal protein L12	AK150318|Rpl12|269261|ribosomal protein L12	AK148566|Rpl12|269261|ribosomal protein L12	BC018321|Rpl12|269261|ribosomal protein L12	L04280|Rpl12|269261|ribosomal protein L12	BC081469|Rpl12|269261|ribosomal protein L12	BC075731|Rpl12|269261|ribosomal protein L12	BC090393|Rpl12|269261|ribosomal protein L12
mm9_v1_chr6_+_136467388_136467391	0.21686	bHLH_family.p2	BC060246|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr2_+_152987036_152987075	0.215956	bHLH_family.p2	NM_133847|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK083541|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC116320|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK035622|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr8_+_113557763_113557896	0.215254	bHLH_family.p2	AK087291|Aars|234734|alanyl-tRNA synthetase	AK158139|Aars|234734|alanyl-tRNA synthetase	AK085725|Aars|234734|alanyl-tRNA synthetase	AY223875|Aars|234734|alanyl-tRNA synthetase	AK150227|Aars|234734|alanyl-tRNA synthetase	AK036738|Aars|234734|alanyl-tRNA synthetase	BC033273|Aars|234734|alanyl-tRNA synthetase	NM_146217|Aars|234734|alanyl-tRNA synthetase	AK183614|Aars|234734|alanyl-tRNA synthetase
mm9_v1_chr4_+_109349259_109349419	0.214346	bHLH_family.p2	AK053752|Faf1|14084|Fas-associated factor 1	U39643|Faf1|14084|Fas-associated factor 1
mm9_v1_chr8_+_85689973_85690078	0.214302	bHLH_family.p2	AK134614|Tbc1d9|71310|TBC1 domain family, member 9	AK173050|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr19_-_40662819_40662952	0.214265	bHLH_family.p2	BC037699|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK166459|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK166494|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AF056573|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AF056574|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK159610|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK147711|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK153946|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK168905|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK151072|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	AK134148|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	NM_019698|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1	NM_153554|Aldh18a1|56454|aldehyde dehydrogenase 18 family, member A1
mm9_v1_chr4_+_102791890_102792040	0.213486	bHLH_family.p2	AK143201|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK138876|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	NM_001039081|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK168693|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	BC108273|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AY769437|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis
mm9_v1_chr18_+_74375754_74375784	0.213445	bHLH_family.p2	AK017941|Cxxc1|74322|CXXC finger 1 (PHD domain)	AK146688|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr11_+_117193594_117193626	0.213202	bHLH_family.p2	NM_001113488|Sept9|53860|septin 9
mm9_v1_chr6_-_147212606_147212654	0.212785	bHLH_family.p2	NM_008970|Pthlh|19227|parathyroid hormone-like peptide
mm9_v1_chr7_+_53631843_53631909	0.212679	bHLH_family.p2	AK076157|Myod1|17927|myogenic differentiation 1	NM_010866|Myod1|17927|myogenic differentiation 1	AK142859|Myod1|17927|myogenic differentiation 1	M84918|Myod1|17927|myogenic differentiation 1	M18779|Myod1|17927|myogenic differentiation 1	BC103613|Myod1|17927|myogenic differentiation 1	BC103618|Myod1|17927|myogenic differentiation 1	BC103619|Myod1|17927|myogenic differentiation 1
mm9_v1_chr3_-_9004404_9004540	0.212674	bHLH_family.p2	U44426|Tpd52|21985|tumor protein D52	BC004068|Tpd52|21985|tumor protein D52	AK171050|Tpd52|21985|tumor protein D52	AK170725|Tpd52|21985|tumor protein D52	AK168379|Tpd52|21985|tumor protein D52	BC094018|Tpd52|21985|tumor protein D52	AK150935|Tpd52|21985|tumor protein D52	AK151471|Tpd52|21985|tumor protein D52	AK151744|Tpd52|21985|tumor protein D52	AK152543|Tpd52|21985|tumor protein D52	AK153266|Tpd52|21985|tumor protein D52	AK161753|Tpd52|21985|tumor protein D52	AK032111|Tpd52|21985|tumor protein D52	AK168817|Tpd52|21985|tumor protein D52	AK153292|Tpd52|21985|tumor protein D52	AK005456|Tpd52|21985|tumor protein D52	BC002036|Tpd52|21985|tumor protein D52	AK169751|Tpd52|21985|tumor protein D52	NM_001025263|Tpd52|21985|tumor protein D52	NM_001025264|Tpd52|21985|tumor protein D52	NM_009412|Tpd52|21985|tumor protein D52
mm9_v1_chr8_+_73054891_73055139	0.212511	bHLH_family.p2	AK177460|Fkbp8|14232|FK506 binding protein 8	AK184741|Fkbp8|14232|FK506 binding protein 8	AK182349|Fkbp8|14232|FK506 binding protein 8	AK197324|Fkbp8|14232|FK506 binding protein 8	AK209719|Fkbp8|14232|FK506 binding protein 8	AK212094|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr8_+_106625524_106625609	0.210774	bHLH_family.p2	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chr10_-_79896330_79896385	0.210642	bHLH_family.p2	BC006860|Tcf3|21423|transcription factor 3	AK017617|Tcf3|21423|transcription factor 3	AK156265|Tcf3|21423|transcription factor 3	AK034777|Tcf3|21423|transcription factor 3	AK161009|Tcf3|21423|transcription factor 3	AK038738|Tcf3|21423|transcription factor 3
mm9_v1_chr2_+_29475234_29475393	0.210132	bHLH_family.p2	AK147468|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147470|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039086|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039087|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_054050|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147696|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147506|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AF348669|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr11_-_34597382_34597397	0.209926	bHLH_family.p2	AK089682|Dock2|94176|dedicator of cyto-kinesis 2	AK037611|Dock2|94176|dedicator of cyto-kinesis 2	AK089228|Dock2|94176|dedicator of cyto-kinesis 2
mm9_v1_chr11_+_117193738_117193767	0.209811	bHLH_family.p2	AK164581|Sept9|53860|septin 9	AK031757|Sept9|53860|septin 9
mm9_v1_chr15_+_79521293_79521438	0.209527	bHLH_family.p2	AK150068|Gtpbp1|14904|GTP binding protein 1	AK150185|Gtpbp1|14904|GTP binding protein 1	AK158342|Gtpbp1|14904|GTP binding protein 1	AK004612|Gtpbp1|14904|GTP binding protein 1	AK147717|Gtpbp1|14904|GTP binding protein 1	AK170091|Gtpbp1|14904|GTP binding protein 1	BC046228|Gtpbp1|14904|GTP binding protein 1	NM_013818|Gtpbp1|14904|GTP binding protein 1	U87965|Gtpbp1|14904|GTP binding protein 1
mm9_v1_chr11_-_120486280_120486339	0.208886	bHLH_family.p2	BC026403|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC040759|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026637|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026650|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AY251540|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK051725|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK135484|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	NM_153056|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)
mm9_v1_chr7_+_146038021_146038054	0.208705	bHLH_family.p2	AK129386|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	AK011198|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr7_-_128850659_128850766	0.208122	bHLH_family.p2	NM_001033173|Usp31|76179|ubiquitin specific peptidase 31
mm9_v1_chr5_+_93238413_93238466	0.207737	bHLH_family.p2	NM_001077595|Shroom3|27428|shroom family member 3	AK164918|Shroom3|27428|shroom family member 3	AF199422|Shroom3|27428|shroom family member 3
mm9_v1_chr11_+_40547143_40547199	0.207716	bHLH_family.p2	NM_026023|Nudcd2|52653|NudC domain containing 2	AK133774|Nudcd2|52653|NudC domain containing 2	AK005909|Nudcd2|52653|NudC domain containing 2	AK004388|Nudcd2|52653|NudC domain containing 2
mm9_v1_chr15_-_82953171_82953235	0.207482	bHLH_family.p2	AK036247|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK159553|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK003698|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK168850|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK153565|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK032596|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK146821|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK168189|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	AK088456|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)	NM_029101|Rrp7a|74778|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm9_v1_chr2_-_131005791_131005843	0.207482	bHLH_family.p2	BC071269|Cenpb|12616|centromere protein B
mm9_v1_chr11_-_46125777_46125868	0.207316	bHLH_family.p2	AK018280|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AF334144|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK030397|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147971|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	BC056974|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147586|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	NM_133769|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2
mm9_v1_chr9_+_21229348_21229458	0.207189	bHLH_family.p2	AK172231|Dnm2|13430|dynamin 2	AK170574|Dnm2|13430|dynamin 2	AK005012|Dnm2|13430|dynamin 2	AK157844|Dnm2|13430|dynamin 2	AK150046|Dnm2|13430|dynamin 2	AK171566|Dnm2|13430|dynamin 2	NM_001039520|Dnm2|13430|dynamin 2	AK171049|Dnm2|13430|dynamin 2	L31398|Dnm2|13430|dynamin 2
mm9_v1_chr10_-_121534134_121534271	0.207071	bHLH_family.p2	AK075928|Tmem5|216395|transmembrane protein 5	BC020100|Tmem5|216395|transmembrane protein 5	NM_153059|Tmem5|216395|transmembrane protein 5	AK043098|Tmem5|216395|transmembrane protein 5	BC083125|Tmem5|216395|transmembrane protein 5	AK078061|Tmem5|216395|transmembrane protein 5
mm9_v1_chr19_-_45634998_45635032	0.20694	bHLH_family.p2	AK133087|Poll|56626|polymerase (DNA directed), lambda	AJ131889|Poll|56626|polymerase (DNA directed), lambda	NM_020032|Poll|56626|polymerase (DNA directed), lambda
mm9_v1_chr14_-_50145396_50145539	0.206809	bHLH_family.p2	BC138981|Slc35f4|75288|solute carrier family 35, member F4	BC145720|Slc35f4|75288|solute carrier family 35, member F4	AK047949|Slc35f4|75288|solute carrier family 35, member F4	AK034308|Slc35f4|75288|solute carrier family 35, member F4	NM_029238|Slc35f4|75288|solute carrier family 35, member F4	AK043617|Slc35f4|75288|solute carrier family 35, member F4	AB041538|Slc35f4|75288|solute carrier family 35, member F4
mm9_v1_chr5_-_31456576_31456630	0.206584	bHLH_family.p2	BC013452|Mpv17|17527|MpV17 mitochondrial inner membrane protein	AK040477|Mpv17|17527|MpV17 mitochondrial inner membrane protein	M36411|Mpv17|17527|MpV17 mitochondrial inner membrane protein	NM_008622|Mpv17|17527|MpV17 mitochondrial inner membrane protein
mm9_v1_chrX_+_34335647_34335650	0.205308	bHLH_family.p2	AK012751|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK002283|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK017881|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK088730|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	X70847|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr8_-_122333845_122333958	0.205297	bHLH_family.p2	
mm9_v1_chr4_-_119094957_119095024	0.204935	bHLH_family.p2	BC021894|Ppcs|106564|phosphopantothenoylcysteine synthetase	AK006290|Ppcs|106564|phosphopantothenoylcysteine synthetase	AK018256|Ppcs|106564|phosphopantothenoylcysteine synthetase	AK159952|Ppcs|106564|phosphopantothenoylcysteine synthetase	NM_026494|Ppcs|106564|phosphopantothenoylcysteine synthetase
mm9_v1_chr4_-_138908210_138908289	0.204664	bHLH_family.p2	AK011387|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC005734|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	NM_023536|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	AK171445|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC096556|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC138221|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC145205|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)	BC145209|Mrto4|69902|MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mm9_v1_chr17_-_85190113_85190128	0.204635	bHLH_family.p2	NM_028233|Lrpprc|72416|leucine-rich PPR-motif containing	AK138527|Lrpprc|72416|leucine-rich PPR-motif containing
mm9_v1_chr3_-_97628441_97628543	0.204544	bHLH_family.p2	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr15_+_97938874_97939027	0.204272	bHLH_family.p2	NM_001163487|Pfkm|18642|phosphofructokinase, muscle	D21867|Pfkm|18642|phosphofructokinase, muscle	AK049773|Pfkm|18642|phosphofructokinase, muscle	AK002711|Pfkm|18642|phosphofructokinase, muscle
mm9_v1_chr8_+_97876182_97876236	0.204252	bHLH_family.p2	BC047278|Mmp15|17388|matrix metallopeptidase 15	NM_008609|Mmp15|17388|matrix metallopeptidase 15
mm9_v1_chr14_+_47502637_47502773	0.204202	bHLH_family.p2	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr15_-_78603701_78603831	0.203554	bHLH_family.p2	AF015769|Mfng|17305|MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr11_+_3388229_3388301	0.203371	bHLH_family.p2	BC079556|Pla2g3|237625|phospholipase A2, group III	NM_172791|Pla2g3|237625|phospholipase A2, group III	AK033572|Pla2g3|237625|phospholipase A2, group III	AK081075|Pla2g3|237625|phospholipase A2, group III
mm9_v1_chr11_-_60624733_60624766	0.201602	bHLH_family.p2	NM_009171|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)
mm9_v1_chr7_-_133520899_133520943	0.201322	bHLH_family.p2	BC026854|Spns1|73658|spinster homolog 1 (Drosophila)	AK033907|Spns1|73658|spinster homolog 1 (Drosophila)	AF212372|Spns1|73658|spinster homolog 1 (Drosophila)	AK154353|Spns1|73658|spinster homolog 1 (Drosophila)	AK166931|Spns1|73658|spinster homolog 1 (Drosophila)	AK008721|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr11_-_86570918_86571097	0.200965	bHLH_family.p2	AK158438|Cltc|67300|clathrin, heavy polypeptide (Hc)	BC079897|Cltc|67300|clathrin, heavy polypeptide (Hc)	NM_001003908|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK171732|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK156869|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr8_-_114535165_114535257	0.20035	bHLH_family.p2	BC027356|Kars|85305|lysyl-tRNA synthetase	BC035324|Kars|85305|lysyl-tRNA synthetase	AK153236|Kars|85305|lysyl-tRNA synthetase	AK089053|Kars|85305|lysyl-tRNA synthetase	AK090203|Kars|85305|lysyl-tRNA synthetase	AK167693|Kars|85305|lysyl-tRNA synthetase	NM_001130868|Kars|85305|lysyl-tRNA synthetase	NM_053092|Kars|85305|lysyl-tRNA synthetase	BC036289|Kars|85305|lysyl-tRNA synthetase
mm9_v1_chr4_+_108132677_108132756	0.200036	bHLH_family.p2	BC145507|Zcchc11|230594|zinc finger, CCHC domain containing 11	BC150791|Zcchc11|230594|zinc finger, CCHC domain containing 11
mm9_v1_chr1_+_111880313_111880391	0.199914	bHLH_family.p2	AK034096|Cdh7|241201|cadherin 7, type 2	NM_172853|Cdh7|241201|cadherin 7, type 2	AK137369|Cdh7|241201|cadherin 7, type 2
mm9_v1_chr2_+_71711274_71711402	0.19954	bHLH_family.p2	AK046805|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK153649|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	NM_172665|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK163553|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC027196|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK028017|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK085215|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC025480|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1
mm9_v1_chr17_-_56601559_56601662	0.199249	bHLH_family.p2	BC054077|Ptprs|19280|protein tyrosine phosphatase, receptor type, S	AK038176|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr13_-_98976043_98976393	0.199207	bHLH_family.p2	BC138030|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC075734|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC098331|Rgnef|110596|Rho-guanine nucleotide exchange factor	NM_012026|Rgnef|110596|Rho-guanine nucleotide exchange factor	U73199|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC022978|Rgnef|110596|Rho-guanine nucleotide exchange factor	AK173325|Rgnef|110596|Rho-guanine nucleotide exchange factor
mm9_v1_chr17_-_27270820_27270865	0.199193	bHLH_family.p2	AK013521|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	AK019014|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	NM_026063|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene	BC030629|2900010M23Rik|67267|RIKEN cDNA 2900010M23 gene
mm9_v1_chrX_-_165111764_165111833	0.198962	bHLH_family.p2	AK146208|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	BC010226|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	AK148898|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	AF117066|Msl3|17692|male-specific lethal 3 homolog (Drosophila)	NM_010832|Msl3|17692|male-specific lethal 3 homolog (Drosophila)
mm9_v1_chr15_+_80778910_80778973	0.198776	bHLH_family.p2	AK171725|Adsl|11564|adenylosuccinate lyase	BC020187|Adsl|11564|adenylosuccinate lyase	U20225|Adsl|11564|adenylosuccinate lyase	AK049372|Adsl|11564|adenylosuccinate lyase	AK051111|Adsl|11564|adenylosuccinate lyase	AK152092|Adsl|11564|adenylosuccinate lyase	NM_009634|Adsl|11564|adenylosuccinate lyase	AK166019|Adsl|11564|adenylosuccinate lyase	AK168906|Adsl|11564|adenylosuccinate lyase	AK170216|Adsl|11564|adenylosuccinate lyase
mm9_v1_chr3_+_87946259_87946350	0.198646	bHLH_family.p2	AK155778|Mef2d|17261|myocyte enhancer factor 2D	NM_133665|Mef2d|17261|myocyte enhancer factor 2D	AK141270|Mef2d|17261|myocyte enhancer factor 2D	BC011070|Mef2d|17261|myocyte enhancer factor 2D
mm9_v1_chr1_-_182186429_182186434	0.198623	bHLH_family.p2	AK148111|Psen2|19165|presenilin 2	NM_001128605|Psen2|19165|presenilin 2
mm9_v1_chr16_+_18776955_18776963	0.198371	bHLH_family.p2	BC002016|Cldn5|12741|claudin 5
mm9_v1_chr11_-_53520771_53520798	0.198294	bHLH_family.p2	BC058180|Rad50|19360|RAD50 homolog (S. cerevisiae)	U66887|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr9_-_37464614_37464896	0.198289	bHLH_family.p2	AK185995|Tbrg1|21376|transforming growth factor beta regulated gene 1	DQ144541|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK131638|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151075|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151209|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC054057|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC037145|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK151457|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC040813|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC065795|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC043022|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK166547|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK011268|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK150549|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK003270|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK011614|Tbrg1|21376|transforming growth factor beta regulated gene 1	AK010925|Tbrg1|21376|transforming growth factor beta regulated gene 1	BC021331|Tbrg1|21376|transforming growth factor beta regulated gene 1	NM_025289|Tbrg1|21376|transforming growth factor beta regulated gene 1
mm9_v1_chr6_-_85324557_85324691	0.197989	bHLH_family.p2	BC141380|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK154922|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK129230|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_001003955|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_177466|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)
mm9_v1_chr10_+_107769093_107769244	0.197769	bHLH_family.p2	BC050234|Pawr|114774|PRKC, apoptosis, WT1, regulator	BC027693|Pawr|114774|PRKC, apoptosis, WT1, regulator	DQ363525|Pawr|114774|PRKC, apoptosis, WT1, regulator	NM_054056|Pawr|114774|PRKC, apoptosis, WT1, regulator
mm9_v1_chr9_-_46043339_46043387	0.197577	bHLH_family.p2	BC021776|Apoc3|11814|apolipoprotein C-III	AK002908|Apoc3|11814|apolipoprotein C-III	NM_023114|Apoc3|11814|apolipoprotein C-III	L04150|Apoc3|11814|apolipoprotein C-III	AK008260|Apoc3|11814|apolipoprotein C-III
mm9_v1_chr18_+_82644510_82644514	0.197545	bHLH_family.p2	NM_001025245|Mbp|17196|myelin basic protein	NM_010777|Mbp|17196|myelin basic protein
mm9_v1_chr9_-_121404799_121404856	0.196731	bHLH_family.p2	NM_031161|Cck|12424|cholecystokinin
mm9_v1_chr1_-_37776633_37776680	0.196437	bHLH_family.p2	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr2_-_29643157_29643203	0.196386	bHLH_family.p2	BC024075|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK167294|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	BC015285|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050583|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK087102|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050587|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK081579|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK043949|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	NM_145520|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)
mm9_v1_chr3_-_86352170_86352368	0.196318	bHLH_family.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr11_-_120051109_120051205	0.196186	bHLH_family.p2	AK013071|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene	AK164256|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene	AK162474|2810410L24Rik|100042332|RIKEN cDNA 2810410L24 gene
mm9_v1_chr10_-_17742931_17743059	0.195418	bHLH_family.p2	BC039801|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK171138|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	BC098509|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK013984|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	NM_028440|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene
mm9_v1_chr6_+_124662387_124662454	0.195046	bHLH_family.p2	AK135729|Phb2|12034|prohibitin 2	AY319418|Phb2|12034|prohibitin 2
mm9_v1_chr5_-_116872852_116872877	0.195027	bHLH_family.p2	AF273453|Hspb8|80888|heat shock protein 8	BC011219|Hspb8|80888|heat shock protein 8	BC003971|Hspb8|80888|heat shock protein 8	AK005052|Hspb8|80888|heat shock protein 8	NM_030704|Hspb8|80888|heat shock protein 8
mm9_v1_chr10_+_80720191_80720236	0.194627	bHLH_family.p2	AK018182|Matk|17179|megakaryocyte-associated tyrosine kinase	AK013606|Matk|17179|megakaryocyte-associated tyrosine kinase	S77473|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr6_-_134516930_134517009	0.194419	bHLH_family.p2	BC060704|Lrp6|16974|low density lipoprotein receptor-related protein 6	NM_008514|Lrp6|16974|low density lipoprotein receptor-related protein 6
mm9_v1_chr3_+_146067763_146067821	0.194216	bHLH_family.p2	AK077112|Ssx2ip|99167|synovial sarcoma, X breakpoint 2 interacting protein
mm9_v1_chr12_-_56087322_56087322	0.194092	bHLH_family.p2	AK135668|Baz1a|217578|bromodomain adjacent to zinc finger domain 1A	NM_013815|Baz1a|217578|bromodomain adjacent to zinc finger domain 1A
mm9_v1_chr11_-_68787314_68787359	0.193821	bHLH_family.p2	BC087921|Rangrf|57785|RAN guanine nucleotide release factor	NM_001101644|Gm4535|100043585|predicted gene 4535	NM_021329|Rangrf|57785|RAN guanine nucleotide release factor	AF243512|Rangrf|57785|RAN guanine nucleotide release factor	BC038470|Rangrf|57785|RAN guanine nucleotide release factor	AK010288|Rangrf|57785|RAN guanine nucleotide release factor
mm9_v1_chrX_-_71526939_71526996	0.19381	bHLH_family.p2	DQ116784|Dnase1l1|69537|deoxyribonuclease 1-like 1	AK150242|Dnase1l1|69537|deoxyribonuclease 1-like 1
mm9_v1_chr9_+_82723787_82723813	0.193371	bHLH_family.p2	AJ242722|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr13_+_101439673_101439729	0.192844	bHLH_family.p2	AK017973|Ccdc125|76041|coiled-coil domain containing 125	BC085249|Ccdc125|76041|coiled-coil domain containing 125
mm9_v1_chr2_+_151969288_151969344	0.192219	bHLH_family.p2	U18658|Tcf15|21407|transcription factor 15	BC027533|Tcf15|21407|transcription factor 15	NM_009328|Tcf15|21407|transcription factor 15
mm9_v1_chr19_+_45081114_45081218	0.191837	bHLH_family.p2	AK146244|Peo1|226153|progressive external ophthalmoplegia 1 (human)
mm9_v1_chr14_-_68333666_68333666	0.191776	bHLH_family.p2	NM_001110162|Cdca2|108912|cell division cycle associated 2
mm9_v1_chr9_+_121628258_121628322	0.190933	bHLH_family.p2	AK163916|Nktr|18087|natural killer tumor recognition sequence	L04289|Nktr|18087|natural killer tumor recognition sequence	NM_010918|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr2_-_51790406_51790534	0.190846	bHLH_family.p2	BC003333|Rbm43|71684|RNA binding motif protein 43	NM_001141981|Rbm43|71684|RNA binding motif protein 43	NM_030243|Rbm43|71684|RNA binding motif protein 43
mm9_v1_chr5_-_37221812_37221913	0.190829	bHLH_family.p2	BC066211|Man2b2|17160|mannosidase 2, alpha B2	AK004900|Man2b2|17160|mannosidase 2, alpha B2	AK040388|Man2b2|17160|mannosidase 2, alpha B2	AK151873|Man2b2|17160|mannosidase 2, alpha B2	AK152349|Man2b2|17160|mannosidase 2, alpha B2	AB006458|Man2b2|17160|mannosidase 2, alpha B2	AK079969|Man2b2|17160|mannosidase 2, alpha B2	AK165376|Man2b2|17160|mannosidase 2, alpha B2	NM_008550|Man2b2|17160|mannosidase 2, alpha B2
mm9_v1_chr15_+_82105322_82105458	0.190822	bHLH_family.p2	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr8_-_26127376_26127404	0.190443	bHLH_family.p2	AK122188|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	NM_007404|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr2_+_61884596_61884650	0.190418	bHLH_family.p2	AK043017|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	NM_033552|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	AK220501|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	HM149278|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	BC039226|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	AB033759|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
mm9_v1_chr7_+_95578782_95579025	0.190343	bHLH_family.p2	AK054253|Rab38|72433|RAB38, member of RAS oncogene family	NM_028238|Rab38|72433|RAB38, member of RAS oncogene family	AK165682|Rab38|72433|RAB38, member of RAS oncogene family	AK044783|Rab38|72433|RAB38, member of RAS oncogene family	AK009296|Rab38|72433|RAB38, member of RAS oncogene family	AY062237|Rab38|72433|RAB38, member of RAS oncogene family	BC089578|Rab38|72433|RAB38, member of RAS oncogene family	AB232634|Rab38|72433|RAB38, member of RAS oncogene family	AK198599|Rab38|72433|RAB38, member of RAS oncogene family
mm9_v1_chr5_+_135408221_135408290	0.19002	bHLH_family.p2	AY138964|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354925|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354926|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354927|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	NM_024479|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK042578|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK132481|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK081683|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	BC002286|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)
mm9_v1_chr13_+_51747065_51747139	0.189528	bHLH_family.p2	AK156076|Secisbp2|75420|SECIS binding protein 2	BC125391|Secisbp2|75420|SECIS binding protein 2	BC144795|Secisbp2|75420|SECIS binding protein 2	NM_029279|Secisbp2|75420|SECIS binding protein 2	BC125393|Secisbp2|75420|SECIS binding protein 2	AK012732|Secisbp2|75420|SECIS binding protein 2	AK168634|Secisbp2|75420|SECIS binding protein 2	AK037988|Secisbp2|75420|SECIS binding protein 2	AK030021|Secisbp2|75420|SECIS binding protein 2
mm9_v1_chr5_-_36924437_36924500	0.189272	bHLH_family.p2	BC086316|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr13_+_93381019_93381074	0.189028	bHLH_family.p2	AK136799|Serinc5|218442|serine incorporator 5
mm9_v1_chr17_+_95149439_95149477	0.189024	bHLH_family.p2	AK132724|2700099C18Rik|77022|NDC80 homolog, kinetochore complex component pseudogene	AK020462|2700099C18Rik|77022|NDC80 homolog, kinetochore complex component pseudogene	AK012623|2700099C18Rik|77022|NDC80 homolog, kinetochore complex component pseudogene	BC002320|2700099C18Rik|77022|NDC80 homolog, kinetochore complex component pseudogene
mm9_v1_chr1_-_145549903_145549945	0.188936	bHLH_family.p2	BC027756|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK080861|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr7_-_52071027_52071027	0.188749	bHLH_family.p2	AF375476|Atf5|107503|activating transcription factor 5	NM_030693|Atf5|107503|activating transcription factor 5
mm9_v1_chr18_+_45719464_45719553	0.188173	bHLH_family.p2	AK087908|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK050390|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr5_-_147888037_147888155	0.188173	bHLH_family.p2	AK140320|Lnx2|140887|ligand of numb-protein X 2	AK170146|Lnx2|140887|ligand of numb-protein X 2	BC117938|Lnx2|140887|ligand of numb-protein X 2	BC117937|Lnx2|140887|ligand of numb-protein X 2	AF401681|Lnx2|140887|ligand of numb-protein X 2	BC090665|Lnx2|140887|ligand of numb-protein X 2	AK047053|Lnx2|140887|ligand of numb-protein X 2	AK036218|Lnx2|140887|ligand of numb-protein X 2	NM_080795|Lnx2|140887|ligand of numb-protein X 2
mm9_v1_chr18_-_61946299_61946348	0.187884	bHLH_family.p2	AK053714|Afap1l1|106877|actin filament associated protein 1-like 1	AK035227|Afap1l1|106877|actin filament associated protein 1-like 1	NM_178928|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr19_+_8810274_8810348	0.18723	bHLH_family.p2	AK145704|Wdr74|107071|WD repeat domain 74	AK077521|Wdr74|107071|WD repeat domain 74	BC019968|Wdr74|107071|WD repeat domain 74	NM_134139|Wdr74|107071|WD repeat domain 74
mm9_v1_chr14_-_73764361_73764430	0.187024	bHLH_family.p2	AK008861|Itm2b|16432|integral membrane protein 2B	AK210559|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr5_-_92512486_92512611	0.186899	bHLH_family.p2	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr3_+_122122640_122122910	0.186754	bHLH_family.p2	AK158241|Bcar3|29815|breast cancer anti-estrogen resistance 3	NM_013867|Bcar3|29815|breast cancer anti-estrogen resistance 3	BC023930|Bcar3|29815|breast cancer anti-estrogen resistance 3	AF179566|Bcar3|29815|breast cancer anti-estrogen resistance 3	AK167578|Bcar3|29815|breast cancer anti-estrogen resistance 3	AK143894|Bcar3|29815|breast cancer anti-estrogen resistance 3
mm9_v1_chr5_-_24606422_24606505	0.186593	bHLH_family.p2	AK154296|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_145401|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr11_+_78325715_78325934	0.185984	bHLH_family.p2	AK165703|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	BC012879|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	BC006833|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	NM_026389|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2	AK196491|Poldip2|67811|polymerase (DNA-directed), delta interacting protein 2
mm9_v1_chr1_-_173224861_173224966	0.185884	bHLH_family.p2	AK011260|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1	AK003070|Ufc1|66155|ubiquitin-fold modifier conjugating enzyme 1
mm9_v1_chr4_+_21774729_21774865	0.185284	bHLH_family.p2	NM_025669|Sfrs18|66625|serine/arginine-rich splicing factor 18	BC141031|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr2_+_131317581_131317728	0.185079	bHLH_family.p2	NM_001177833|Smox|228608|spermine oxidase	NM_001177834|Smox|228608|spermine oxidase	NM_001177835|Smox|228608|spermine oxidase	NM_001177836|Smox|228608|spermine oxidase	NM_001177837|Smox|228608|spermine oxidase	NM_001177838|Smox|228608|spermine oxidase	NM_001177839|Smox|228608|spermine oxidase	NM_001177840|Smox|228608|spermine oxidase	NM_145533|Smox|228608|spermine oxidase	AK143129|Smox|228608|spermine oxidase	AK159275|Smox|228608|spermine oxidase	AK159372|Smox|228608|spermine oxidase	AJ567473|Smox|228608|spermine oxidase	AJ567474|Smox|228608|spermine oxidase	AJ567475|Smox|228608|spermine oxidase	AJ567476|Smox|228608|spermine oxidase	AJ567477|Smox|228608|spermine oxidase	AJ567478|Smox|228608|spermine oxidase	AJ567479|Smox|228608|spermine oxidase	AJ567480|Smox|228608|spermine oxidase	BC004831|Smox|228608|spermine oxidase	AK166350|Smox|228608|spermine oxidase	AF495851|Smox|228608|spermine oxidase	AF495852|Smox|228608|spermine oxidase	AF495853|Smox|228608|spermine oxidase
mm9_v1_chr1_-_72921098_72921102	0.1848	bHLH_family.p2	L12447|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr5_+_98758322_98758388	0.184512	bHLH_family.p2	BC049770|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	NM_001024614|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	AK005711|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene
mm9_v1_chr1_-_55084321_55084327	0.184437	bHLH_family.p2	NM_031179|Sf3b1|81898|splicing factor 3b, subunit 1	AB037890|Sf3b1|81898|splicing factor 3b, subunit 1	AK165992|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr11_-_84693679_84693786	0.184189	bHLH_family.p2	BC125492|Pigw|70325|phosphatidylinositol glycan anchor biosynthesis, class W	BC144942|Pigw|70325|phosphatidylinositol glycan anchor biosynthesis, class W	AK081337|Pigw|70325|phosphatidylinositol glycan anchor biosynthesis, class W	NM_027388|Pigw|70325|phosphatidylinositol glycan anchor biosynthesis, class W	AK011762|Pigw|70325|phosphatidylinositol glycan anchor biosynthesis, class W	AK086537|Pigw|70325|phosphatidylinositol glycan anchor biosynthesis, class W	NM_001077636|Pigw|70325|phosphatidylinositol glycan anchor biosynthesis, class W
mm9_v1_chr11_+_120645722_120645897	0.18368	bHLH_family.p2	BC003350|Gps1|209318|G protein pathway suppressor 1	NM_145370|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr9_+_107453862_107453927	0.183666	bHLH_family.p2	EU314810|Rassf1|56289|Ras association (RalGDS/AF-6) domain family member 1
mm9_v1_chr11_-_118216689_118216724	0.183423	bHLH_family.p2	NM_011594|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr18_-_62071256_62071263	0.182999	bHLH_family.p2	AK086538|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr8_-_108224931_108224989	0.182904	bHLH_family.p2	AK171345|Acd|497652|adrenocortical dysplasia	AK160599|Acd|497652|adrenocortical dysplasia	BC138694|Acd|497652|adrenocortical dysplasia	BC138695|Acd|497652|adrenocortical dysplasia	BC145384|Acd|497652|adrenocortical dysplasia	AK032683|Acd|497652|adrenocortical dysplasia	AK145959|Acd|497652|adrenocortical dysplasia	AK171458|Acd|497652|adrenocortical dysplasia	AK052768|Acd|497652|adrenocortical dysplasia
mm9_v1_chrX_-_136406046_136406192	0.182761	bHLH_family.p2	BC132153|Morc4|75746|microrchidia 4	BC132497|Morc4|75746|microrchidia 4	BC098483|Morc4|75746|microrchidia 4	AK017472|Morc4|75746|microrchidia 4	AK048519|Morc4|75746|microrchidia 4	AK164017|Morc4|75746|microrchidia 4	AK053895|Morc4|75746|microrchidia 4	AK032807|Morc4|75746|microrchidia 4	NM_001193309|Morc4|75746|microrchidia 4	NM_029413|Morc4|75746|microrchidia 4
mm9_v1_chr13_-_3892788_3892823	0.18271	bHLH_family.p2	AJ010045|Net1|56349|neuroepithelial cell transforming gene 1	AK020636|Net1|56349|neuroepithelial cell transforming gene 1	AK088632|Net1|56349|neuroepithelial cell transforming gene 1	AK139921|Net1|56349|neuroepithelial cell transforming gene 1	BC004699|Net1|56349|neuroepithelial cell transforming gene 1	AK082128|Net1|56349|neuroepithelial cell transforming gene 1	NM_001047159|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr6_-_97437749_97437990	0.182343	bHLH_family.p2	AK143978|Frmd4b|232288|FERM domain containing 4B	AF327856|Frmd4b|232288|FERM domain containing 4B
mm9_v1_chr2_-_127555628_127555667	0.182285	bHLH_family.p2	AK078971|Mall|228576|mal, T-cell differentiation protein-like	AK163867|Mall|228576|mal, T-cell differentiation protein-like	NM_145532|Mall|228576|mal, T-cell differentiation protein-like	BC012256|Mall|228576|mal, T-cell differentiation protein-like
mm9_v1_chr4_-_129012546_129012617	0.182186	bHLH_family.p2	U35141|Rbbp4|19646|retinoblastoma binding protein 4	AK166437|Rbbp4|19646|retinoblastoma binding protein 4	AK082419|Rbbp4|19646|retinoblastoma binding protein 4	BC138568|Rbbp4|19646|retinoblastoma binding protein 4	BC138570|Rbbp4|19646|retinoblastoma binding protein 4	NM_009030|Rbbp4|19646|retinoblastoma binding protein 4
mm9_v1_chr2_+_75497282_75497379	0.18214	bHLH_family.p2	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr19_+_7131270_7131299	0.181793	bHLH_family.p2	AK052998|Macrod1|107227|MACRO domain containing 1
mm9_v1_chr2_+_129442079_129442192	0.181453	bHLH_family.p2	AK195466|Sirpa|19261|signal-regulatory protein alpha
mm9_v1_chr6_+_88415396_88415624	0.181449	bHLH_family.p2	NM_019685|Ruvbl1|56505|RuvB-like protein 1	AK146374|Ruvbl1|56505|RuvB-like protein 1	AK146258|Ruvbl1|56505|RuvB-like protein 1	AK132783|Ruvbl1|56505|RuvB-like protein 1	AK156078|Ruvbl1|56505|RuvB-like protein 1	BC004718|Ruvbl1|56505|RuvB-like protein 1	AK145062|Ruvbl1|56505|RuvB-like protein 1	AK012170|Ruvbl1|56505|RuvB-like protein 1
mm9_v1_chr11_-_69418965_69419018	0.181367	bHLH_family.p2	X16645|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr17_-_80295336_80295462	0.181362	bHLH_family.p2	AK135988|Atl2|56298|atlastin GTPase 2	BC060501|Atl2|56298|atlastin GTPase 2	NM_019717|Atl2|56298|atlastin GTPase 2	AK038697|Atl2|56298|atlastin GTPase 2	AK043907|Atl2|56298|atlastin GTPase 2	AK008381|Atl2|56298|atlastin GTPase 2	NM_178050|Atl2|56298|atlastin GTPase 2
mm9_v1_chr14_+_63741286_63741338	0.181025	bHLH_family.p2	AK083393|Ctsb|13030|cathepsin B	NM_007798|Ctsb|13030|cathepsin B	S69034|Ctsb|13030|cathepsin B	BC006656|Ctsb|13030|cathepsin B	AK159992|Ctsb|13030|cathepsin B	AK167361|Ctsb|13030|cathepsin B	AK170959|Ctsb|13030|cathepsin B
mm9_v1_chr12_+_110693193_110693229	0.180124	bHLH_family.p2	EU434914|Dlk1|13386|delta-like 1 homolog (Drosophila)	EU434916|Dlk1|13386|delta-like 1 homolog (Drosophila)
mm9_v1_chr7_-_149763980_149764029	0.179893	bHLH_family.p2	AK135234|H19|14955|H19 fetal liver mRNA	AK145379|H19|14955|H19 fetal liver mRNA
mm9_v1_chr4_-_155148591_155148708	0.179827	bHLH_family.p2	AK030019|Vwa1|246228|von Willebrand factor A domain containing 1	BC026919|Vwa1|246228|von Willebrand factor A domain containing 1	BC036166|Vwa1|246228|von Willebrand factor A domain containing 1	AK077240|Vwa1|246228|von Willebrand factor A domain containing 1	AY030094|Vwa1|246228|von Willebrand factor A domain containing 1	NM_147776|Vwa1|246228|von Willebrand factor A domain containing 1
mm9_v1_chr19_-_5424393_5424433	0.179603	bHLH_family.p2	
mm9_v1_chr5_+_32000312_32000424	0.179573	bHLH_family.p2	AK156929|Bre|107976|brain and reproductive organ-expressed protein	AK020047|Bre|107976|brain and reproductive organ-expressed protein	BC061000|Bre|107976|brain and reproductive organ-expressed protein	AK050695|Bre|107976|brain and reproductive organ-expressed protein	AK080991|Bre|107976|brain and reproductive organ-expressed protein	AK166884|Bre|107976|brain and reproductive organ-expressed protein	AF440752|Bre|107976|brain and reproductive organ-expressed protein	AF527952|Bre|107976|brain and reproductive organ-expressed protein	AF527953|Bre|107976|brain and reproductive organ-expressed protein	AF527954|Bre|107976|brain and reproductive organ-expressed protein	AF527955|Bre|107976|brain and reproductive organ-expressed protein	AF538925|Bre|107976|brain and reproductive organ-expressed protein	NM_144541|Bre|107976|brain and reproductive organ-expressed protein	NM_181279|Bre|107976|brain and reproductive organ-expressed protein	NM_181280|Bre|107976|brain and reproductive organ-expressed protein	NM_181281|Bre|107976|brain and reproductive organ-expressed protein	NM_181282|Bre|107976|brain and reproductive organ-expressed protein
mm9_v1_chr7_+_151361424_151361430	0.179522	bHLH_family.p2	AK139360|Shank2|210274|SH3/ankyrin domain gene 2	NM_001113373|Shank2|210274|SH3/ankyrin domain gene 2
mm9_v1_chr10_-_80362828_80362912	0.179236	bHLH_family.p2	AK213641|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr12_-_21423296_21423379	0.178834	bHLH_family.p2	BC090838|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	NM_011739|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC110680|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr11_+_94491055_94491166	0.178701	bHLH_family.p2	AK159374|Lrrc59|98238|leucine rich repeat containing 59	AK159552|Lrrc59|98238|leucine rich repeat containing 59	AK166576|Lrrc59|98238|leucine rich repeat containing 59	AK053450|Lrrc59|98238|leucine rich repeat containing 59	BC006877|Lrrc59|98238|leucine rich repeat containing 59	NM_133807|Lrrc59|98238|leucine rich repeat containing 59	AK169390|Lrrc59|98238|leucine rich repeat containing 59	BC066172|Lrrc59|98238|leucine rich repeat containing 59	AK167604|Lrrc59|98238|leucine rich repeat containing 59	AK169250|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr7_+_150238718_150238934	0.178681	bHLH_family.p2	AK190176|Cd81|12520|CD81 antigen	X59047|Cd81|12520|CD81 antigen
mm9_v1_chr17_+_45823255_45823356	0.17867	bHLH_family.p2	AK144153|Mrpl14|68463|mitochondrial ribosomal protein L14	BC027021|Mrpl14|68463|mitochondrial ribosomal protein L14	NM_026732|Mrpl14|68463|mitochondrial ribosomal protein L14	AK050273|Mrpl14|68463|mitochondrial ribosomal protein L14	AK003500|Mrpl14|68463|mitochondrial ribosomal protein L14
mm9_v1_chr15_+_76157893_76157894	0.178631	bHLH_family.p2	AK005101|Exosc4|109075|exosome component 4
mm9_v1_chr9_-_103267867_103268006	0.178158	bHLH_family.p2	AF215660|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AF320340|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	L22067|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC096479|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC062156|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC052770|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AK010956|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr11_-_50105794_50105864	0.178061	bHLH_family.p2	AY442299|Maml1|103806|mastermind like 1 (Drosophila)	AK129088|Maml1|103806|mastermind like 1 (Drosophila)	NM_175334|Maml1|103806|mastermind like 1 (Drosophila)
mm9_v1_chr9_+_59387443_59387536	0.178056	bHLH_family.p2	AK075911|Hexa|15211|hexosaminidase A	NM_010421|Hexa|15211|hexosaminidase A	AK168186|Hexa|15211|hexosaminidase A	AK159091|Hexa|15211|hexosaminidase A	U07631|Hexa|15211|hexosaminidase A	AK159814|Hexa|15211|hexosaminidase A	AK167013|Hexa|15211|hexosaminidase A	AK170903|Hexa|15211|hexosaminidase A	AK075895|Hexa|15211|hexosaminidase A	AK151960|Hexa|15211|hexosaminidase A	AK080777|Hexa|15211|hexosaminidase A	AK159890|Hexa|15211|hexosaminidase A	AK150444|Hexa|15211|hexosaminidase A	BC010755|Hexa|15211|hexosaminidase A	AK160112|Hexa|15211|hexosaminidase A	X64331|Hexa|15211|hexosaminidase A
mm9_v1_chr7_-_31839825_31839873	0.177875	bHLH_family.p2	BC024671|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_052991|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_194321|Fxyd1|56188|FXYD domain-containing ion transport regulator 1
mm9_v1_chr4_-_57003214_57003289	0.177847	bHLH_family.p2	NM_001142965|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene	BC132345|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene
mm9_v1_chr5_+_123794626_123794632	0.177747	bHLH_family.p2	BC046777|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr14_+_119498754_119498761	0.177277	bHLH_family.p2	
mm9_v1_chr11_-_59005394_59005458	0.177215	bHLH_family.p2	NM_008193|Guk1|14923|guanylate kinase 1
mm9_v1_chr17_+_34066835_34066937	0.177206	bHLH_family.p2	BC068121|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2	NM_009059|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2	AK144440|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2	U54639|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2
mm9_v1_chr6_+_147995935_147995985	0.177	bHLH_family.p2	AK043388|Far2|330450|fatty acyl CoA reductase 2	AK043589|Far2|330450|fatty acyl CoA reductase 2	AK137298|Far2|330450|fatty acyl CoA reductase 2	NM_178797|Far2|330450|fatty acyl CoA reductase 2	BC055759|Far2|330450|fatty acyl CoA reductase 2	AK161201|Far2|330450|fatty acyl CoA reductase 2	AK038584|Far2|330450|fatty acyl CoA reductase 2
mm9_v1_chr2_+_104657018_104657084	0.176968	bHLH_family.p2	AK009882|2310047K21Rik|71928|RIKEN cDNA 2310047K21 gene
mm9_v1_chr11_-_103815291_103815312	0.176595	bHLH_family.p2	BC019167|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr3_-_96531361_96531401	0.176564	bHLH_family.p2	BC147485|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	BC151028|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	NM_028925|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	BC026793|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK217858|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK016716|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK140296|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C	AK043194|Polr3c|74414|polymerase (RNA) III (DNA directed) polypeptide C
mm9_v1_chr5_-_44617844_44617920	0.176478	bHLH_family.p2	NM_173764|Tapt1|231225|transmembrane anterior posterior transformation 1
mm9_v1_chr17_+_15080256_15080312	0.176435	bHLH_family.p2	BC054359|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK017276|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK018298|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK076476|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC071250|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	BC027313|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK197792|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK213665|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK214640|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	AK218850|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr9_-_62384846_62384857	0.176085	bHLH_family.p2	AK087414|Coro2b|235431|coronin, actin binding protein, 2B	NM_175484|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr13_+_32893929_32893948	0.175604	bHLH_family.p2	AK041886|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr7_-_134170532_134170710	0.175527	bHLH_family.p2	BC004758|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)
mm9_v1_chr6_-_137597616_137597640	0.175308	bHLH_family.p2	AK166156|Eps8|13860|epidermal growth factor receptor pathway substrate 8	NM_007945|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr12_-_78339623_78339649	0.175035	bHLH_family.p2	AK020561|9530018F02Rik|77402|RIKEN cDNA 9530018F02 gene	AK083182|9530018F02Rik|77402|RIKEN cDNA 9530018F02 gene
mm9_v1_chrX_+_71032421_71032564	0.175021	bHLH_family.p2	AK142600|Ssr4|20832|signal sequence receptor, delta	NM_009279|Ssr4|20832|signal sequence receptor, delta	AK003044|Ssr4|20832|signal sequence receptor, delta	AK160089|Ssr4|20832|signal sequence receptor, delta	AK013723|Ssr4|20832|signal sequence receptor, delta	BC012971|Ssr4|20832|signal sequence receptor, delta	AK007921|Ssr4|20832|signal sequence receptor, delta	BC019419|Ssr4|20832|signal sequence receptor, delta	BC008172|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr14_-_55735114_55735220	0.1746	bHLH_family.p2	AB099712|Jph4|319984|junctophilin 4	NM_177049|Jph4|319984|junctophilin 4
mm9_v1_chr11_-_116714173_116714405	0.174432	bHLH_family.p2	AK204489|Srsf2|20382|serine/arginine-rich splicing factor 2	L13610|Srsf2|20382|serine/arginine-rich splicing factor 2	BC005493|Srsf2|20382|serine/arginine-rich splicing factor 2	AF077858|Srsf2|20382|serine/arginine-rich splicing factor 2	U14648|Srsf2|20382|serine/arginine-rich splicing factor 2	AK161873|Srsf2|20382|serine/arginine-rich splicing factor 2	AK011528|Srsf2|20382|serine/arginine-rich splicing factor 2	AK076448|Srsf2|20382|serine/arginine-rich splicing factor 2	AK086103|Srsf2|20382|serine/arginine-rich splicing factor 2	AK088042|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr8_+_108384479_108384590	0.17441	bHLH_family.p2	BC083165|Nutf2|68051|nuclear transport factor 2	AK152212|Nutf2|68051|nuclear transport factor 2	BC003955|Nutf2|68051|nuclear transport factor 2	NM_026532|Nutf2|68051|nuclear transport factor 2	AK020512|Nutf2|68051|nuclear transport factor 2	AK028410|Nutf2|68051|nuclear transport factor 2	AK002461|Nutf2|68051|nuclear transport factor 2	AK012500|Nutf2|68051|nuclear transport factor 2	AK051049|Nutf2|68051|nuclear transport factor 2	AK168026|Nutf2|68051|nuclear transport factor 2	BC086773|Nutf2|68051|nuclear transport factor 2
mm9_v1_chr10_-_6979627_6979716	0.174369	bHLH_family.p2	AK082372|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr1_-_188573165_188573236	0.174032	bHLH_family.p2	AK007616|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013217|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	BC006787|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK010658|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK087997|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK013204|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	AK169088|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)	NM_026041|Rrp15|67223|ribosomal RNA processing 15 homolog (S. cerevisiae)
mm9_v1_chr11_-_50139023_50139176	0.173886	bHLH_family.p2	BC012408|Canx|12330|calnexin	BC040244|Canx|12330|calnexin	AK028279|Canx|12330|calnexin	AK165508|Canx|12330|calnexin	AK084175|Canx|12330|calnexin	AK171868|Canx|12330|calnexin	AK159298|Canx|12330|calnexin	AK166649|Canx|12330|calnexin	NM_001110499|Canx|12330|calnexin	NM_001110500|Canx|12330|calnexin	NM_007597|Canx|12330|calnexin
mm9_v1_chr11_+_95528269_95528342	0.173752	bHLH_family.p2	NM_008831|Phb|18673|prohibitin	AK178178|Phb|18673|prohibitin	AK168248|Phb|18673|prohibitin	AK002714|Phb|18673|prohibitin	AK152933|Phb|18673|prohibitin	AK150956|Phb|18673|prohibitin	AK151073|Phb|18673|prohibitin	AK010619|Phb|18673|prohibitin	AK160490|Phb|18673|prohibitin	AK168656|Phb|18673|prohibitin	X78682|Phb|18673|prohibitin
mm9_v1_chr11_-_106993235_106993235	0.173622	bHLH_family.p2	NM_176850|Bptf|207165|bromodomain PHD finger transcription factor
mm9_v1_chr8_+_82163574_82163602	0.173413	bHLH_family.p2	NM_001081164|Otud4|73945|OTU domain containing 4	BC138373|Otud4|73945|OTU domain containing 4	BC145259|Otud4|73945|OTU domain containing 4
mm9_v1_chr3_+_145421870_145422044	0.173361	bHLH_family.p2	AK149185|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr13_-_12553652_12553838	0.173251	bHLH_family.p2	BC040243|Lgals8|56048|lectin, galactose binding, soluble 8	AK004782|Lgals8|56048|lectin, galactose binding, soluble 8	AF218069|Lgals8|56048|lectin, galactose binding, soluble 8	AK029685|Lgals8|56048|lectin, galactose binding, soluble 8	AK145881|Lgals8|56048|lectin, galactose binding, soluble 8	AK146746|Lgals8|56048|lectin, galactose binding, soluble 8	AK083350|Lgals8|56048|lectin, galactose binding, soluble 8	AK075736|Lgals8|56048|lectin, galactose binding, soluble 8	AK148939|Lgals8|56048|lectin, galactose binding, soluble 8	AK155066|Lgals8|56048|lectin, galactose binding, soluble 8
mm9_v1_chr19_+_46576779_46576908	0.172946	bHLH_family.p2	AF281047|Trim8|93679|tripartite motif-containing 8	BC152343|Trim8|93679|tripartite motif-containing 8	BC152344|Trim8|93679|tripartite motif-containing 8	BC037065|Trim8|93679|tripartite motif-containing 8	BC060094|Trim8|93679|tripartite motif-containing 8
mm9_v1_chr3_-_126701367_126701380	0.172852	bHLH_family.p2	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr17_+_24987499_24987611	0.17274	bHLH_family.p2	AK150557|Hagh|14651|hydroxyacyl glutathione hydrolase	AK151231|Hagh|14651|hydroxyacyl glutathione hydrolase	AK152742|Hagh|14651|hydroxyacyl glutathione hydrolase	AK165777|Hagh|14651|hydroxyacyl glutathione hydrolase	BC019817|Hagh|14651|hydroxyacyl glutathione hydrolase	NM_001159626|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr19_-_6915038_6915131	0.172588	bHLH_family.p2	AK195314|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AF074714|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	NM_019924|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK089467|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK154674|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	BC012964|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4
mm9_v1_chr10_+_56107352_56107416	0.171969	bHLH_family.p2	CT010327|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr11_+_70246079_70246238	0.171926	bHLH_family.p2	AK150389|Arrb2|216869|arrestin, beta 2	AK170647|Arrb2|216869|arrestin, beta 2	AK089542|Arrb2|216869|arrestin, beta 2	AK162889|Arrb2|216869|arrestin, beta 2	AK159317|Arrb2|216869|arrestin, beta 2	NM_145429|Arrb2|216869|arrestin, beta 2	AK154874|Arrb2|216869|arrestin, beta 2	AK170889|Arrb2|216869|arrestin, beta 2	BC016642|Arrb2|216869|arrestin, beta 2
mm9_v1_chr4_+_148478290_148478305	0.171787	bHLH_family.p2	AK079634|Dffa|13347|DNA fragmentation factor, alpha subunit	BC058213|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr16_+_91406408_91406577	0.171679	bHLH_family.p2	AK160991|Il10rb|16155|interleukin 10 receptor, beta	BC145791|Il10rb|16155|interleukin 10 receptor, beta	NM_008349|Il10rb|16155|interleukin 10 receptor, beta	AK134042|Il10rb|16155|interleukin 10 receptor, beta	AF440787|Il10rb|16155|interleukin 10 receptor, beta	AK040938|Il10rb|16155|interleukin 10 receptor, beta	U53696|Il10rb|16155|interleukin 10 receptor, beta
mm9_v1_chr11_-_119948078_119948092	0.171596	bHLH_family.p2	BC141108|Azi1|12009|5-azacytidine induced gene 1
mm9_v1_chr19_+_45089665_45089708	0.171553	bHLH_family.p2	NM_145503|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK169936|Lzts2|226154|leucine zipper, putative tumor suppressor 2	BC092263|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK144154|Lzts2|226154|leucine zipper, putative tumor suppressor 2	NM_001130525|Lzts2|226154|leucine zipper, putative tumor suppressor 2
mm9_v1_chr11_+_3230733_3230843	0.17155	bHLH_family.p2	NM_178149|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK028419|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK029304|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK154842|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK005141|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK160300|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528081|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC055920|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC079641|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528078|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC028479|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1
mm9_v1_chr11_-_97560943_97560996	0.171013	bHLH_family.p2	NM_001163308|Pcgf2|22658|polycomb group ring finger 2
mm9_v1_chr14_-_14793678_14793804	0.170997	bHLH_family.p2	AK147003|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK007440|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK008899|Thoc7|66231|THO complex 7 homolog (Drosophila)	NM_001013578|Thoc7|66231|THO complex 7 homolog (Drosophila)	NM_025435|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK013319|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK005176|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC042209|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK010958|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC027113|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC054419|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC116919|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC116945|Thoc7|66231|THO complex 7 homolog (Drosophila)
mm9_v1_chr2_+_27370649_27370751	0.170905	bHLH_family.p2	NM_080848|Wdr5|140858|WD repeat domain 5	BC025801|Wdr5|140858|WD repeat domain 5	AK075937|Wdr5|140858|WD repeat domain 5	AK144091|Wdr5|140858|WD repeat domain 5	BC016103|Wdr5|140858|WD repeat domain 5
mm9_v1_chr6_+_134780207_134780442	0.17078	bHLH_family.p2	AK045467|Crebl2|232430|cAMP responsive element binding protein-like 2	NM_177687|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109358|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109359|Crebl2|232430|cAMP responsive element binding protein-like 2	AK195782|Crebl2|232430|cAMP responsive element binding protein-like 2
mm9_v1_chr17_+_27822162_27822200	0.170751	bHLH_family.p2	AK043967|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_178365|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr3_-_85691167_85691439	0.17053	bHLH_family.p2	BC119772|Glt28d2|320302|glycosyltransferase 28 domain containing 2	BC121823|Glt28d2|320302|glycosyltransferase 28 domain containing 2	AK029059|Glt28d2|320302|glycosyltransferase 28 domain containing 2	AK030588|Glt28d2|320302|glycosyltransferase 28 domain containing 2	AK032049|Glt28d2|320302|glycosyltransferase 28 domain containing 2	NM_177130|Glt28d2|320302|glycosyltransferase 28 domain containing 2
mm9_v1_chr11_-_88579517_88579542	0.170521	bHLH_family.p2	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr9_-_53475167_53475249	0.170454	bHLH_family.p2	AK014894|Cul5|75717|cullin 5	BC037054|Cul5|75717|cullin 5
mm9_v1_chr19_-_59018112_59018143	0.170291	bHLH_family.p2	AK076683|Hspa12a|73442|heat shock protein 12A	AK076668|Hspa12a|73442|heat shock protein 12A	AK087732|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr14_-_57723453_57723503	0.170028	bHLH_family.p2	AK133942|Gjb2|14619|gap junction protein, beta 2	BC051437|Gjb2|14619|gap junction protein, beta 2	BC013634|Gjb2|14619|gap junction protein, beta 2	M63803|Gjb2|14619|gap junction protein, beta 2
mm9_v1_chr10_-_127103595_127103798	0.169816	bHLH_family.p2	AK171180|Nab2|17937|Ngfi-A binding protein 2	BC045139|Nab2|17937|Ngfi-A binding protein 2	AK155501|Nab2|17937|Ngfi-A binding protein 2	AK158688|Nab2|17937|Ngfi-A binding protein 2	U47543|Nab2|17937|Ngfi-A binding protein 2	NM_001122895|Nab2|17937|Ngfi-A binding protein 2	NM_008668|Nab2|17937|Ngfi-A binding protein 2
mm9_v1_chr15_+_88650015_88650107	0.169778	bHLH_family.p2	AK017880|Creld2|76737|cysteine-rich with EGF-like domains 2	NM_029720|Creld2|76737|cysteine-rich with EGF-like domains 2	AK165884|Creld2|76737|cysteine-rich with EGF-like domains 2
mm9_v1_chrX_+_17739762_17739792	0.169412	bHLH_family.p2	AK164941|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK144654|Kdm6a|22289|4lysine (K)-specific demethylase 6A	AK080370|Kdm6a|22289|4lysine (K)-specific demethylase 6A	BC053433|Kdm6a|22289|4lysine (K)-specific demethylase 6A	NM_009483|Kdm6a|22289|4lysine (K)-specific demethylase 6A
mm9_v1_chr7_+_148654681_148654765	0.169224	bHLH_family.p2	NM_001111050|Cd151|12476|CD151 antigen	U89772|Cd151|12476|CD151 antigen	BC012236|Cd151|12476|CD151 antigen
mm9_v1_chr17_+_27693518_27693641	0.169176	bHLH_family.p2	NM_001025427|Hmga1|15361|high mobility group AT-hook 1	NM_001039356|Hmga1|15361|high mobility group AT-hook 1	NM_001166535|Hmga1|15361|high mobility group AT-hook 1	NM_001166536|Hmga1|15361|high mobility group AT-hook 1	NM_001166539|Hmga1|15361|high mobility group AT-hook 1	NM_001166540|Hmga1|15361|high mobility group AT-hook 1	NM_001166541|Hmga1|15361|high mobility group AT-hook 1	NM_001166542|Hmga1|15361|high mobility group AT-hook 1	NM_001166543|Hmga1|15361|high mobility group AT-hook 1	NM_001166544|Hmga1|15361|high mobility group AT-hook 1	NM_001166545|Hmga1|15361|high mobility group AT-hook 1	NM_001166546|Hmga1|15361|high mobility group AT-hook 1	NM_001166537|Hmga1|15361|high mobility group AT-hook 1	NM_016660|Hmga1|15361|high mobility group AT-hook 1	AK171334|Hmga1|15361|high mobility group AT-hook 1	AK155661|Hmga1|15361|high mobility group AT-hook 1	BC013455|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK010617|Hmga1|15361|high mobility group AT-hook 1	AK169783|Hmga1|15361|high mobility group AT-hook 1	NM_001166476|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	NM_001166477|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK154957|Hmga1|15361|high mobility group AT-hook 1	AK160036|Hmga1|15361|high mobility group AT-hook 1	BC008125|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	BC093496|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1
mm9_v1_chr12_+_111976121_111976196	0.168905	bHLH_family.p2	NM_027149|Wdr20a|69641|WD repeat domain 20A
mm9_v1_chr6_+_3953944_3953986	0.168442	bHLH_family.p2	BC039062|Gng11|66066|guanine nucleotide binding protein (G protein), gamma 11	NM_025331|Gng11|66066|guanine nucleotide binding protein (G protein), gamma 11
mm9_v1_chr3_-_108013851_108013851	0.168406	bHLH_family.p2	AK046849|Atxn7l2|72522|ataxin 7-like 2	NM_175183|Atxn7l2|72522|ataxin 7-like 2
mm9_v1_chr2_-_130250376_130250436	0.168365	bHLH_family.p2	NM_001114541|Fam113a|319513|family with sequence similarity 113, member A	BC064802|Fam113a|319513|family with sequence similarity 113, member A	AK031469|Fam113a|319513|family with sequence similarity 113, member A
mm9_v1_chr4_+_140258090_140258179	0.168114	bHLH_family.p2	AK186216|Rcc2|108911|regulator of chromosome condensation 2	AK129370|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr1_+_95917069_95917172	0.167973	bHLH_family.p2	BC070438|Neu4|241159|sialidase 4	NM_173772|Neu4|241159|sialidase 4	AK034236|Neu4|241159|sialidase 4	AB510404|Neu4|241159|sialidase 4
mm9_v1_chr11_-_101645834_101645863	0.167844	bHLH_family.p2	DQ832277|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr3_-_27052794_27052801	0.167568	bHLH_family.p2	NM_001177626|Ect2|13605|ect2 oncogene
mm9_v1_chr10_+_85484933_85484965	0.167483	bHLH_family.p2	AK150190|Fbxo7|69754|F-box protein 7	AK147907|Fbxo7|69754|F-box protein 7
mm9_v1_chr6_-_8728094_8728149	0.167114	bHLH_family.p2	BC002030|Ica1|15893|islet cell autoantigen 1	AK192988|Ica1|15893|islet cell autoantigen 1	U26459|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr3_+_30691760_30691806	0.166813	bHLH_family.p2	BC017162|Sec62|69276|SEC62 homolog (S. cerevisiae)	NM_027016|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr2_-_179960563_179960563	0.166584	bHLH_family.p2	AJ293593|Lama5|16776|laminin, alpha 5	NM_001081171|Lama5|16776|laminin, alpha 5
mm9_v1_chr10_+_80102813_80103107	0.166582	bHLH_family.p2	AK180542|Csnk1g2|103236|casein kinase 1, gamma 2	AK182278|Csnk1g2|103236|casein kinase 1, gamma 2	AK184141|Csnk1g2|103236|casein kinase 1, gamma 2	AK184876|Csnk1g2|103236|casein kinase 1, gamma 2	AK013192|Csnk1g2|103236|casein kinase 1, gamma 2
mm9_v1_chr13_+_118009379_118009441	0.16635	bHLH_family.p2	NM_010330|Emb|13723|embigin	AK138271|Emb|13723|embigin	AK079570|Emb|13723|embigin
mm9_v1_chr2_+_35111861_35111977	0.166309	bHLH_family.p2	AK148957|Gsn|227753|gelsolin	AK089934|Gsn|227753|gelsolin	AK168707|Gsn|227753|gelsolin	BC060377|Gsn|227753|gelsolin	AK151684|Gsn|227753|gelsolin	AK169670|Gsn|227753|gelsolin	AK168532|Gsn|227753|gelsolin	AK168461|Gsn|227753|gelsolin	AK167918|Gsn|227753|gelsolin	AK150359|Gsn|227753|gelsolin	AK153029|Gsn|227753|gelsolin	AK146969|Gsn|227753|gelsolin	AK168725|Gsn|227753|gelsolin	AK169041|Gsn|227753|gelsolin	AK166932|Gsn|227753|gelsolin
mm9_v1_chr3_+_16083164_16083288	0.1661	bHLH_family.p2	NM_001145919|Ythdf3|229096|YTH domain family 3	NM_172677|Ythdf3|229096|YTH domain family 3	BC067040|Ythdf3|229096|YTH domain family 3	AK039176|Ythdf3|229096|YTH domain family 3	AK137245|Ythdf3|229096|YTH domain family 3	BC067042|Ythdf3|229096|YTH domain family 3	AK053736|Ythdf3|229096|YTH domain family 3	BC057158|Ythdf3|229096|YTH domain family 3
mm9_v1_chr14_-_31942057_31942124	0.165997	bHLH_family.p2	AK036279|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene	AK008341|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene	AK019298|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene	AK007443|2010107H07Rik|66487|RIKEN cDNA 2010107H07 gene
mm9_v1_chr16_+_23429205_23429359	0.16593	bHLH_family.p2	AK047543|Rtp1|239766|receptor transporter protein 1	NM_001004151|Rtp1|239766|receptor transporter protein 1	BC138910|Rtp1|239766|receptor transporter protein 1	BC138912|Rtp1|239766|receptor transporter protein 1	AY562225|Rtp1|239766|receptor transporter protein 1	EU070411|Rtp1|239766|receptor transporter protein 1
mm9_v1_chr9_-_103267697_103267728	0.165663	bHLH_family.p2	AB046372|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chrX_-_7000037_7000113	0.165593	bHLH_family.p2	BC072610|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AF038507|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AK008437|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene
mm9_v1_chr2_+_156301651_156301691	0.165592	bHLH_family.p2	AK122251|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr1_-_171899278_171899299	0.164772	bHLH_family.p2	AK028380|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	AK050211|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	BC011464|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7
mm9_v1_chr1_+_75356876_75356905	0.164281	bHLH_family.p2	AK132391|Des|13346|desmin
mm9_v1_chr16_-_94592095_94592172	0.164124	bHLH_family.p2	NM_001159618|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr2_-_5816330_5816380	0.16411	bHLH_family.p2	AF145254|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AF222748|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	BC005458|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK017615|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK136447|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)
mm9_v1_chr17_+_46783180_46783244	0.163931	bHLH_family.p2	NM_025302|Mrpl2|27398|mitochondrial ribosomal protein L2	AK007672|Mrpl2|27398|mitochondrial ribosomal protein L2	AK009521|Mrpl2|27398|mitochondrial ribosomal protein L2	BC027762|Mrpl2|27398|mitochondrial ribosomal protein L2
mm9_v1_chr7_+_85928194_85928291	0.163869	bHLH_family.p2	AK002993|Mrps11|67994|mitochondrial ribosomal protein S11	AK152027|Mrps11|67994|mitochondrial ribosomal protein S11	AK166241|Mrps11|67994|mitochondrial ribosomal protein S11	BC028279|Mrps11|67994|mitochondrial ribosomal protein S11	AK160207|Mrps11|67994|mitochondrial ribosomal protein S11	BC005701|Mrps11|67994|mitochondrial ribosomal protein S11	AB049945|Mrps11|67994|mitochondrial ribosomal protein S11
mm9_v1_chr5_+_29895965_29896034	0.163689	bHLH_family.p2	BC059245|Ube3c|100763|ubiquitin protein ligase E3C	AK029973|Ube3c|100763|ubiquitin protein ligase E3C	AK045211|Ube3c|100763|ubiquitin protein ligase E3C	AK140491|Ube3c|100763|ubiquitin protein ligase E3C	BC120731|Ube3c|100763|ubiquitin protein ligase E3C	BC137626|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr9_+_120868808_120869094	0.163643	bHLH_family.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr5_-_123183537_123183571	0.163309	bHLH_family.p2	AK213252|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr19_-_57082666_57082717	0.163236	bHLH_family.p2	BC031515|Afap1l2|226250|actin filament associated protein 1-like 2	AK220430|Afap1l2|226250|actin filament associated protein 1-like 2	AK158196|Afap1l2|226250|actin filament associated protein 1-like 2	AK087809|Afap1l2|226250|actin filament associated protein 1-like 2	AK148682|Afap1l2|226250|actin filament associated protein 1-like 2	AK087449|Afap1l2|226250|actin filament associated protein 1-like 2	AK171853|Afap1l2|226250|actin filament associated protein 1-like 2	AK048649|Afap1l2|226250|actin filament associated protein 1-like 2	AK053222|Afap1l2|226250|actin filament associated protein 1-like 2
mm9_v1_chr11_-_53705199_53705212	0.162903	bHLH_family.p2	AK140640|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	NM_011396|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5
mm9_v1_chr4_+_101091875_101091893	0.162878	bHLH_family.p2	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr10_+_128184908_128185017	0.16255	bHLH_family.p2	NM_030100|Wibg|78428|within bgcn homolog (Drosophila)	AK020702|Wibg|78428|within bgcn homolog (Drosophila)	AJ459407|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chrX_-_101866123_101866164	0.162535	bHLH_family.p2	AK032922|Zdhhc15|108672|zinc finger, DHHC domain containing 15	AK029137|Zdhhc15|108672|zinc finger, DHHC domain containing 15	AK160360|Zdhhc15|108672|zinc finger, DHHC domain containing 15	AK077949|Zdhhc15|108672|zinc finger, DHHC domain containing 15
mm9_v1_chr19_+_6276685_6276733	0.16231	bHLH_family.p2	AK088980|Ehd1|13660|EH-domain containing 1	AK172669|Ehd1|13660|EH-domain containing 1
mm9_v1_chr1_-_66864031_66864049	0.162264	bHLH_family.p2	BC141036|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene
mm9_v1_chr6_-_122770626_122770631	0.162184	bHLH_family.p2	
mm9_v1_chr1_+_34364633_34364780	0.162012	bHLH_family.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr17_+_25970057_25970093	0.161559	bHLH_family.p2	AK009713|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr7_-_140004777_140004878	0.161264	bHLH_family.p2	AK156629|Fam53b|77938|family with sequence similarity 53, member B	AK051299|Fam53b|77938|family with sequence similarity 53, member B	NM_212473|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr7_+_117266253_117266328	0.161177	bHLH_family.p2	AK039572|Wee1|22390|WEE 1 homolog 1 (S. pombe)
mm9_v1_chr17_+_36116889_36116901	0.161051	bHLH_family.p2	NM_008136|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr11_+_114530028_114530110	0.160994	bHLH_family.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr2_-_5635394_5635451	0.160461	bHLH_family.p2	AK154434|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr2_-_144096518_144096579	0.160392	bHLH_family.p2	AK031873|Snx5|69178|sorting nexin 5	AK144710|Snx5|69178|sorting nexin 5	AK169545|Snx5|69178|sorting nexin 5	AK049129|Snx5|69178|sorting nexin 5	AK078776|Snx5|69178|sorting nexin 5	AK169786|Snx5|69178|sorting nexin 5	AK088223|Snx5|69178|sorting nexin 5	AK152311|Snx5|69178|sorting nexin 5
mm9_v1_chr3_+_87723411_87723427	0.160295	bHLH_family.p2	AK167623|Mrpl24|67707|mitochondrial ribosomal protein L24
mm9_v1_chr5_+_140895245_140895309	0.160244	bHLH_family.p2	AK033722|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK170938|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	NM_133916|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK167618|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK089978|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC031704|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC023767|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC051065|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B
mm9_v1_chr9_+_114310181_114310275	0.160233	bHLH_family.p2	AK171593|Glb1|12091|galactosidase, beta 1	AK166473|Glb1|12091|galactosidase, beta 1	AK153218|Glb1|12091|galactosidase, beta 1	AK034049|Glb1|12091|galactosidase, beta 1	AK046107|Tmppe|100504715|transmembrane protein with metallophosphoesterase domain	AK034966|Glb1|12091|galactosidase, beta 1	AK076517|Glb1|12091|galactosidase, beta 1	AK171760|Glb1|12091|galactosidase, beta 1	AK042069|Glb1|12091|galactosidase, beta 1	M57734|Glb1|12091|galactosidase, beta 1	NM_009752|Glb1|12091|galactosidase, beta 1	AK048460|Glb1|12091|galactosidase, beta 1	AK167271|Glb1|12091|galactosidase, beta 1	BC028875|Glb1|12091|galactosidase, beta 1
mm9_v1_chr16_+_13256573_13256634	0.159749	bHLH_family.p2	NM_001122667|Mkl2|239719|MKL/myocardin-like 2	X66901|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr4_+_122960059_122960153	0.159606	bHLH_family.p2	BC058263|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	BC056432|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	NM_130881|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4
mm9_v1_chr9_+_44205157_44205205	0.15943	bHLH_family.p2	AK040077|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AK155339|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chrX_+_93291474_93291563	0.159427	bHLH_family.p2	
mm9_v1_chr2_+_152987262_152987297	0.159118	bHLH_family.p2	AK162435|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK048158|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK171487|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC110309|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK088012|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK047497|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK087048|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AB093220|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr5_+_118619772_118619918	0.158608	bHLH_family.p2	BC128022|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	D83698|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	NM_007545|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm9_v1_chr4_-_110024513_110024515	0.15818	bHLH_family.p2	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr11_+_120345915_120346014	0.158004	bHLH_family.p2	AK134816|Mrpl12|56282|mitochondrial ribosomal protein L12	AK166969|Mrpl12|56282|mitochondrial ribosomal protein L12	AK002757|Mrpl12|56282|mitochondrial ribosomal protein L12	AK028168|Mrpl12|56282|mitochondrial ribosomal protein L12	AK168337|Mrpl12|56282|mitochondrial ribosomal protein L12	BC005712|Mrpl12|56282|mitochondrial ribosomal protein L12	NM_027204|Mrpl12|56282|mitochondrial ribosomal protein L12	BC019565|Mrpl12|56282|mitochondrial ribosomal protein L12
mm9_v1_chr5_+_117769274_117769326	0.157894	bHLH_family.p2	NM_001033311|Vsig10|231668|V-set and immunoglobulin domain containing 10	AK138152|Vsig10|231668|V-set and immunoglobulin domain containing 10
mm9_v1_chr1_+_16095854_16096053	0.157863	bHLH_family.p2	AF456767|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	AK149656|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	BC019796|Rdh10|98711|retinol dehydrogenase 10 (all-trans)	NM_133832|Rdh10|98711|retinol dehydrogenase 10 (all-trans)
mm9_v1_chr7_+_104520120_104520143	0.157567	bHLH_family.p2	AK166897|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	NM_199035|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	AK141341|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	AK166755|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)	BC061244|Alg8|381903|asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)
mm9_v1_chr1_+_135142673_135142702	0.157414	bHLH_family.p2	NM_001160268|Plekha6|240753|pleckstrin homology domain containing, family A member 6	NM_182930|Plekha6|240753|pleckstrin homology domain containing, family A member 6	BC054547|Plekha6|240753|pleckstrin homology domain containing, family A member 6	AK173074|Plekha6|240753|pleckstrin homology domain containing, family A member 6
mm9_v1_chr13_+_109906361_109906552	0.157011	bHLH_family.p2	AK035860|Pde4d|238871|phosphodiesterase 4D, cAMP specific	AK081013|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr5_+_102194126_102194174	0.156541	bHLH_family.p2	BC055292|Cds1|74596|CDP-diacylglycerol synthase 1	NM_173370|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr10_-_118306180_118306246	0.156474	bHLH_family.p2	AK149371|Dyrk2|69181|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	AK155496|Dyrk2|69181|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm9_v1_chr14_-_56254424_56254541	0.156455	bHLH_family.p2	AK202276|Ipo4|75751|importin 4	AF123388|Ipo4|75751|importin 4	AK018399|Ipo4|75751|importin 4	AK147086|Ipo4|75751|importin 4	AK142138|Ipo4|75751|importin 4	BC075690|Ipo4|75751|importin 4	AK171031|Ipo4|75751|importin 4	NM_024267|Ipo4|75751|importin 4	AK030490|Ipo4|75751|importin 4
mm9_v1_chr17_+_35390491_35390518	0.156185	bHLH_family.p2	AK196028|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm9_v1_chr4_-_151851574_151851597	0.156056	bHLH_family.p2	BC039178|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	NM_010598|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	U31908|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr15_-_79158357_79158407	0.155902	bHLH_family.p2	BC057209|Pla2g6|53357|phospholipase A2, group VI	AK183678|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr6_-_72185570_72185570	0.155873	bHLH_family.p2	AB046527|Atoh8|71093|atonal homolog 8 (Drosophila)	NM_153778|Atoh8|71093|atonal homolog 8 (Drosophila)
mm9_v1_chr11_-_106640755_106640876	0.15587	bHLH_family.p2	AF177202|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	BC119131|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	BC144810|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK042777|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK041591|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK164730|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK169977|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	NM_015810|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit
mm9_v1_chr15_+_84753875_84753883	0.155818	bHLH_family.p2	AK133371|Nup50|18141|nucleoporin 50
mm9_v1_chr2_+_30027012_30027044	0.155722	bHLH_family.p2	AK144459|Endog|13804|endonuclease G	AB012108|Endog|13804|endonuclease G	NM_007931|Endog|13804|endonuclease G	BC030177|Endog|13804|endonuclease G
mm9_v1_chr5_+_31495623_31495689	0.155685	bHLH_family.p2	AK156299|Snx17|266781|sorting nexin 17	BC023732|Snx17|266781|sorting nexin 17	AK077650|Snx17|266781|sorting nexin 17	AK077780|Snx17|266781|sorting nexin 17	BC026571|Snx17|266781|sorting nexin 17	NM_153680|Snx17|266781|sorting nexin 17	AK047265|Snx17|266781|sorting nexin 17	BC029675|Snx17|266781|sorting nexin 17
mm9_v1_chr19_+_7568894_7569107	0.155096	bHLH_family.p2	NM_146091|Atl3|109168|atlastin GTPase 3	AK147720|Atl3|109168|atlastin GTPase 3	AK170550|Atl3|109168|atlastin GTPase 3	AK077752|Atl3|109168|atlastin GTPase 3	AK028842|Atl3|109168|atlastin GTPase 3	AK030660|Atl3|109168|atlastin GTPase 3	AK169476|Atl3|109168|atlastin GTPase 3	BC017138|Atl3|109168|atlastin GTPase 3	AK014617|Atl3|109168|atlastin GTPase 3
mm9_v1_chr7_-_56136367_56136391	0.154973	bHLH_family.p2	AK154018|E2f8|108961|E2F transcription factor 8	AK157235|E2f8|108961|E2F transcription factor 8	AK160240|E2f8|108961|E2F transcription factor 8	AK172437|E2f8|108961|E2F transcription factor 8	AK049525|E2f8|108961|E2F transcription factor 8
mm9_v1_chr2_-_58998590_58998708	0.154637	bHLH_family.p2	AK040157|Ccdc148|227933|coiled-coil domain containing 148	BC062650|Ccdc148|227933|coiled-coil domain containing 148	NM_001001178|Ccdc148|227933|coiled-coil domain containing 148
mm9_v1_chr16_+_59471600_59471691	0.154632	bHLH_family.p2	NM_025910|Mina|67014|myc induced nuclear antigen	AK007810|Mina|67014|myc induced nuclear antigen	AK032595|Mina|67014|myc induced nuclear antigen	AK013451|Mina|67014|myc induced nuclear antigen	AK014426|Mina|67014|myc induced nuclear antigen	AK019117|Mina|67014|myc induced nuclear antigen	AK031671|Mina|67014|myc induced nuclear antigen	BC025109|Mina|67014|myc induced nuclear antigen	BC058242|Mina|67014|myc induced nuclear antigen
mm9_v1_chr11_-_29073541_29073557	0.154399	bHLH_family.p2	AK042012|A630052C17Rik|320757|RIKEN cDNA A630052C17 gene
mm9_v1_chr11_+_53164384_53164450	0.154066	bHLH_family.p2	AK044058|Aff4|93736|AF4/FMR2 family, member 4	AK054401|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr9_+_3404047_3404117	0.153821	bHLH_family.p2	BC125483|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC125485|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK083386|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK045423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	NM_027545|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK014327|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK031423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC100536|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC051218|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC043480|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)
mm9_v1_chr11_+_98308333_98308404	0.153795	bHLH_family.p2	AK145996|Grb7|14786|growth factor receptor bound protein 7	BC081547|Grb7|14786|growth factor receptor bound protein 7	AK168438|Grb7|14786|growth factor receptor bound protein 7	AK220277|Grb7|14786|growth factor receptor bound protein 7	BC003295|Grb7|14786|growth factor receptor bound protein 7
mm9_v1_chr11_+_72254841_72254975	0.153661	bHLH_family.p2	AK143487|Mybbp1a|18432|MYB binding protein (P160) 1a	AK083908|Mybbp1a|18432|MYB binding protein (P160) 1a	AK166533|Mybbp1a|18432|MYB binding protein (P160) 1a	AK154016|Mybbp1a|18432|MYB binding protein (P160) 1a	AK143469|Mybbp1a|18432|MYB binding protein (P160) 1a	AK155074|Mybbp1a|18432|MYB binding protein (P160) 1a	BC052889|Mybbp1a|18432|MYB binding protein (P160) 1a	U63648|Mybbp1a|18432|MYB binding protein (P160) 1a	BC060167|Mybbp1a|18432|MYB binding protein (P160) 1a	BC048858|Mybbp1a|18432|MYB binding protein (P160) 1a	NM_016776|Mybbp1a|18432|MYB binding protein (P160) 1a	BC015070|Mybbp1a|18432|MYB binding protein (P160) 1a	AK208884|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr10_+_86148239_86148360	0.153516	bHLH_family.p2	AK019015|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK007490|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK017634|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK012122|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK090016|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene
mm9_v1_chr11_+_68912444_68912492	0.153398	bHLH_family.p2	NM_011065|Per1|18626|period homolog 1 (Drosophila)	BC091645|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr11_-_6174828_6174898	0.153216	bHLH_family.p2	BC023041|Tmed4|103694|transmembrane emp24 protein transport domain containing 4	NM_134020|Tmed4|103694|transmembrane emp24 protein transport domain containing 4	AK078425|Tmed4|103694|transmembrane emp24 protein transport domain containing 4	AF368921|Tmed4|103694|transmembrane emp24 protein transport domain containing 4	AK158876|Tmed4|103694|transmembrane emp24 protein transport domain containing 4
mm9_v1_chr12_-_86715612_86715842	0.153145	bHLH_family.p2	AK150605|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152656|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC064755|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC085097|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK003676|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK084117|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152643|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	NM_026775|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)
mm9_v1_chr4_-_41071227_41071277	0.152605	bHLH_family.p2	AK195706|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK197974|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK198310|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK199838|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK202668|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK204352|Nol6|230082|nucleolar protein family 6 (RNA-associated)	AK209500|Nol6|230082|nucleolar protein family 6 (RNA-associated)
mm9_v1_chr7_+_108812146_108812327	0.152411	bHLH_family.p2	AK006072|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK138593|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK159314|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK154577|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK049768|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK028101|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK141383|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	U09874|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	BC048175|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	NM_009191|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK032421|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK145641|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)
mm9_v1_chr5_+_137960107_137960139	0.152265	bHLH_family.p2	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr8_+_125091925_125091959	0.151725	bHLH_family.p2	AK076527|Cdt1|67177|chromatin licensing and DNA replication factor 1	AB086655|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK012041|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK017609|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK083015|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK028287|Cdt1|67177|chromatin licensing and DNA replication factor 1	AK049163|Cdt1|67177|chromatin licensing and DNA replication factor 1	BC013842|Cdt1|67177|chromatin licensing and DNA replication factor 1
mm9_v1_chr4_+_118293403_118293498	0.151568	bHLH_family.p2	NM_026932|Ebna1bp2|69072|EBNA1 binding protein 2	BC054723|Ebna1bp2|69072|EBNA1 binding protein 2	AK007491|Ebna1bp2|69072|EBNA1 binding protein 2	AK134732|Ebna1bp2|69072|EBNA1 binding protein 2	AK167070|Ebna1bp2|69072|EBNA1 binding protein 2	BC062876|Ebna1bp2|69072|EBNA1 binding protein 2	AK168269|Ebna1bp2|69072|EBNA1 binding protein 2
mm9_v1_chr8_+_41509109_41509241	0.151346	bHLH_family.p2	AK030662|Zdhhc2|70546|zinc finger, DHHC domain containing 2	NM_178395|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK136296|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK046533|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK044652|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC117761|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC127156|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK018284|Zdhhc2|70546|zinc finger, DHHC domain containing 2
mm9_v1_chr4_-_132768403_132768450	0.151258	bHLH_family.p2	AK140464|Gpr3|14748|G-protein coupled receptor 3	AK158917|Gpr3|14748|G-protein coupled receptor 3	AK140302|Gpr3|14748|G-protein coupled receptor 3	NM_008154|Gpr3|14748|G-protein coupled receptor 3
mm9_v1_chr11_+_120645606_120645625	0.151202	bHLH_family.p2	BC103782|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr19_+_47929516_47929546	0.151158	bHLH_family.p2	AK146834|Gsto1|14873|glutathione S-transferase omega 1	AK168383|Gsto1|14873|glutathione S-transferase omega 1	AK027922|Gsto1|14873|glutathione S-transferase omega 1	BC085165|Gsto1|14873|glutathione S-transferase omega 1	AK204961|Gsto1|14873|glutathione S-transferase omega 1
mm9_v1_chr2_-_27309917_27310008	0.151096	bHLH_family.p2	AK208466|Brd3|67382|bromodomain containing 3	AK184568|Brd3|67382|bromodomain containing 3	AK190838|Brd3|67382|bromodomain containing 3	AK210005|Brd3|67382|bromodomain containing 3	AK218049|Brd3|67382|bromodomain containing 3	AK010739|Brd3|67382|bromodomain containing 3
mm9_v1_chr11_-_6100141_6100160	0.150947	bHLH_family.p2	BC037090|Nudcd3|209586|NudC domain containing 3	AK050476|Nudcd3|209586|NudC domain containing 3	EU350933|Nudcd3|209586|NudC domain containing 3	AK036694|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr11_+_115891682_115891695	0.150416	bHLH_family.p2	BC054452|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr4_+_137860701_137860792	0.150329	bHLH_family.p2	AK081542|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK150683|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK148095|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK084267|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase	AK077651|Ddost|13200|dolichyl-di-phosphooligosaccharide-protein glycotransferase
mm9_v1_chr10_-_80363606_80363713	0.150231	bHLH_family.p2	AF144702|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	NM_013895|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr2_+_84680782_84680813	0.149993	bHLH_family.p2	AK031215|Slc43a1|72401|solute carrier family 43, member 1	NM_001083809|Slc43a1|72401|solute carrier family 43, member 1
mm9_v1_chr2_+_144096752_144096785	0.149539	bHLH_family.p2	AK031535|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK049565|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	NM_028984|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene
mm9_v1_chr1_-_174012771_174012895	0.149459	bHLH_family.p2	AK033314|Ncstn|59287|nicastrin	AK170173|Ncstn|59287|nicastrin	AK172579|Ncstn|59287|nicastrin	BC019998|Ncstn|59287|nicastrin	AF240469|Ncstn|59287|nicastrin	AK170244|Ncstn|59287|nicastrin	AK170369|Ncstn|59287|nicastrin	AK129102|Ncstn|59287|nicastrin	NM_021607|Ncstn|59287|nicastrin
mm9_v1_chr19_-_4615523_4615557	0.149282	bHLH_family.p2	AK163603|Lrfn4|225875|leucine rich repeat and fibronectin type III domain containing 4
mm9_v1_chr1_-_22812829_22812843	0.149198	bHLH_family.p2	AK090169|Rims1|116837|regulating synaptic membrane exocytosis 1
mm9_v1_chr12_+_16660245_16660299	0.149136	bHLH_family.p2	AK158943|Ntsr2|18217|neurotensin receptor 2	NM_008747|Ntsr2|18217|neurotensin receptor 2	U51908|Ntsr2|18217|neurotensin receptor 2	BC141019|Ntsr2|18217|neurotensin receptor 2	AB041826|Ntsr2|18217|neurotensin receptor 2	AB041827|Ntsr2|18217|neurotensin receptor 2
mm9_v1_chr10_+_5958432_5958574	0.148921	bHLH_family.p2	AK132308|Zbtb2|381990|zinc finger and BTB domain containing 2	NM_001033466|Zbtb2|381990|zinc finger and BTB domain containing 2
mm9_v1_chr4_+_61947463_61947577	0.148455	bHLH_family.p2	NM_025286|Slc31a2|20530|solute carrier family 31, member 2	AK008473|Slc31a2|20530|solute carrier family 31, member 2	BC099447|Slc31a2|20530|solute carrier family 31, member 2	AK007579|Slc31a2|20530|solute carrier family 31, member 2	AK152812|Slc31a2|20530|solute carrier family 31, member 2	AK003269|Slc31a2|20530|solute carrier family 31, member 2	AK151612|Slc31a2|20530|solute carrier family 31, member 2	BC029183|Slc31a2|20530|solute carrier family 31, member 2
mm9_v1_chr4_-_62180914_62181170	0.148354	bHLH_family.p2	BC018236|Alad|17025|aminolevulinate, delta-, dehydratase	AK167673|Alad|17025|aminolevulinate, delta-, dehydratase	AK002300|Alad|17025|aminolevulinate, delta-, dehydratase	AK032908|Alad|17025|aminolevulinate, delta-, dehydratase	AK168119|Alad|17025|aminolevulinate, delta-, dehydratase	AK168132|Alad|17025|aminolevulinate, delta-, dehydratase	BC055930|Alad|17025|aminolevulinate, delta-, dehydratase	NM_008525|Alad|17025|aminolevulinate, delta-, dehydratase
mm9_v1_chrX_-_154481041_154481154	0.148268	bHLH_family.p2	BC043093|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	BC060716|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	NM_177751|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK122399|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK141544|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2
mm9_v1_chr14_-_73725576_73725603	0.148044	bHLH_family.p2	AK011246|Rb1|19645|retinoblastoma 1	BC096525|Rb1|19645|retinoblastoma 1	NM_009029|Rb1|19645|retinoblastoma 1
mm9_v1_chr1_+_164569280_164569299	0.147933	bHLH_family.p2	NM_010865|Myoc|17926|myocilin	AK144395|Myoc|17926|myocilin	AB013592|Myoc|17926|myocilin	AF039869|Myoc|17926|myocilin
mm9_v1_chr11_-_109583524_109583607	0.147897	bHLH_family.p2	BC029169|Fam20a|208659|family with sequence similarity 20, member A	NM_153782|Fam20a|208659|family with sequence similarity 20, member A	AK142932|Fam20a|208659|family with sequence similarity 20, member A
mm9_v1_chrX_+_20259602_20259729	0.147737	bHLH_family.p2	AK189333|Uba1|22201|ubiquitin-like modifier activating enzyme 1	AK219712|Uba1|22201|ubiquitin-like modifier activating enzyme 1
mm9_v1_chr19_-_57389256_57389302	0.147677	bHLH_family.p2	AK029371|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr5_+_34339351_34339354	0.147441	bHLH_family.p2	AK147594|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chrX_+_162676910_162677002	0.147049	bHLH_family.p2	BC025165|Gpm6b|14758|glycoprotein m6b	AK016567|Gpm6b|14758|glycoprotein m6b	AK020224|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr7_+_35697397_35697452	0.146812	bHLH_family.p2	AK145843|Pepd|18624|peptidase D	BC131945|Pepd|18624|peptidase D	BC131973|Pepd|18624|peptidase D	NM_008820|Pepd|18624|peptidase D	U51014|Pepd|18624|peptidase D	AK168384|Pepd|18624|peptidase D	AK010581|Pepd|18624|peptidase D	D82983|Pepd|18624|peptidase D	BC086644|Pepd|18624|peptidase D
mm9_v1_chr15_+_88650115_88650124	0.14656	bHLH_family.p2	BC047370|Creld2|76737|cysteine-rich with EGF-like domains 2
mm9_v1_chr17_+_87153425_87153527	0.146447	bHLH_family.p2	AF045160|Epas1|13819|endothelial PAS domain protein 1	AK141185|Epas1|13819|endothelial PAS domain protein 1	BC057870|Epas1|13819|endothelial PAS domain protein 1	U81983|Epas1|13819|endothelial PAS domain protein 1
mm9_v1_chr17_+_14416508_14416565	0.146413	bHLH_family.p2	NM_022315|Smoc2|64074|SPARC related modular calcium binding 2	AJ249901|Smoc2|64074|SPARC related modular calcium binding 2	AK030958|Smoc2|64074|SPARC related modular calcium binding 2	AK159749|Smoc2|64074|SPARC related modular calcium binding 2	AK160002|Smoc2|64074|SPARC related modular calcium binding 2	AK172312|Smoc2|64074|SPARC related modular calcium binding 2	AK040109|Smoc2|64074|SPARC related modular calcium binding 2	BC019527|Smoc2|64074|SPARC related modular calcium binding 2
mm9_v1_chr1_-_177422630_177422675	0.145845	bHLH_family.p2	BC051133|Rgs7|24012|regulator of G protein signaling 7	NM_001199003|Rgs7|24012|regulator of G protein signaling 7	NM_011880|Rgs7|24012|regulator of G protein signaling 7
mm9_v1_chr16_-_20241392_20241432	0.145155	bHLH_family.p2	AK079603|Map6d1|208158|MAP6 domain containing 1	BC116220|Map6d1|208158|MAP6 domain containing 1	BC116221|Map6d1|208158|MAP6 domain containing 1	AK163656|Map6d1|208158|MAP6 domain containing 1	NM_198599|Map6d1|208158|MAP6 domain containing 1
mm9_v1_chr1_-_60154977_60155020	0.145135	bHLH_family.p2	NM_001199061|Wdr12|57750|WD repeat domain 12	AK161299|Wdr12|57750|WD repeat domain 12	BC004748|Wdr12|57750|WD repeat domain 12	AK016611|Wdr12|57750|WD repeat domain 12
mm9_v1_chr4_-_106472351_106472448	0.145102	bHLH_family.p2	AK031588|Acot11|329910|acyl-CoA thioesterase 11	AF416923|Acot11|329910|acyl-CoA thioesterase 11	BC042492|Acot11|329910|acyl-CoA thioesterase 11	AK048670|Acot11|329910|acyl-CoA thioesterase 11	NM_025590|Acot11|329910|acyl-CoA thioesterase 11	AK052332|Acot11|329910|acyl-CoA thioesterase 11
mm9_v1_chr5_+_144165482_144165519	0.144789	bHLH_family.p2	NM_025841|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK003515|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK150402|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AJ278133|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	AK007403|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	BC007146|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm9_v1_chr6_+_30351871_30351895	0.144504	bHLH_family.p2	AK085116|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr10_-_9620837_9620892	0.144402	bHLH_family.p2	NM_001081344|Stxbp5|78808|syntaxin binding protein 5 (tomosyn)
mm9_v1_chr1_-_95531961_95532109	0.144369	bHLH_family.p2	AF004934|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr3_+_145421621_145421769	0.14387	bHLH_family.p2	AK143507|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK148907|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	NM_026993|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK010430|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	BC034505|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr13_+_32893882_32893918	0.143864	bHLH_family.p2	AK050368|Wrnip1|78903|Werner helicase interacting protein 1	AK167570|Wrnip1|78903|Werner helicase interacting protein 1	NM_030215|Wrnip1|78903|Werner helicase interacting protein 1	AK170542|Wrnip1|78903|Werner helicase interacting protein 1	BC010482|Wrnip1|78903|Werner helicase interacting protein 1	AK170846|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr19_-_4269161_4269181	0.143816	bHLH_family.p2	AK148293|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK171514|Ssh3|245857|slingshot homolog 3 (Drosophila)	AB099289|Ssh3|245857|slingshot homolog 3 (Drosophila)	BC028922|Ssh3|245857|slingshot homolog 3 (Drosophila)	NM_198113|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK038981|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK149880|Ssh3|245857|slingshot homolog 3 (Drosophila)	AK166342|Ssh3|245857|slingshot homolog 3 (Drosophila)
mm9_v1_chr10_-_14264800_14264841	0.14381	bHLH_family.p2	AB183545|Gpr126|215798|G protein-coupled receptor 126	NM_001002268|Gpr126|215798|G protein-coupled receptor 126
mm9_v1_chr2_+_84680479_84680580	0.143809	bHLH_family.p2	NM_024497|Slc43a1|72401|solute carrier family 43, member 1	BC053747|Slc43a1|72401|solute carrier family 43, member 1
mm9_v1_chr15_+_81494399_81494424	0.143476	bHLH_family.p2	BC023933|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	BC030864|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AK141810|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr7_-_26004848_26004855	0.143452	bHLH_family.p2	AK010701|Dedd2|67379|death effector domain-containing DNA binding protein 2
mm9_v1_chr14_-_27354375_27354387	0.143211	bHLH_family.p2	AK141597|Slmap|83997|sarcolemma associated protein	AK164911|Slmap|83997|sarcolemma associated protein	AK166396|Slmap|83997|sarcolemma associated protein	AK163630|Slmap|83997|sarcolemma associated protein
mm9_v1_chr2_+_163899842_163899948	0.143096	bHLH_family.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr19_+_45225176_45225204	0.142827	bHLH_family.p2	BC018246|Tlx1|21908|T-cell leukemia, homeobox 1	NM_021901|Tlx1|21908|T-cell leukemia, homeobox 1
mm9_v1_chr3_+_138190223_138190257	0.142639	bHLH_family.p2	AK167097|Eif4e|13684|eukaryotic translation initiation factor 4E	M61731|Eif4e|13684|eukaryotic translation initiation factor 4E	AK082867|Eif4e|13684|eukaryotic translation initiation factor 4E	AK146757|Eif4e|13684|eukaryotic translation initiation factor 4E	BC010759|Eif4e|13684|eukaryotic translation initiation factor 4E	BC085087|Eif4e|13684|eukaryotic translation initiation factor 4E
mm9_v1_chr19_-_7416286_7416363	0.142098	bHLH_family.p2	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr6_+_107479719_107479841	0.141577	bHLH_family.p2	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr3_+_51219882_51219968	0.141227	bHLH_family.p2	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr17_-_80114299_80114446	0.14095	bHLH_family.p2	AK137461|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	BC050063|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	NM_009994|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	U03283|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1	AK139368|Cyp1b1|13078|cytochrome P450, family 1, subfamily b, polypeptide 1
mm9_v1_chr8_-_124431559_124431577	0.140808	bHLH_family.p2	BC026131|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr15_+_76174727_76174807	0.140521	bHLH_family.p2	AK182781|Cyc1|66445|cytochrome c-1	AK188690|Cyc1|66445|cytochrome c-1	AK184866|Cyc1|66445|cytochrome c-1	AK195664|Cyc1|66445|cytochrome c-1	AK215816|Cyc1|66445|cytochrome c-1
mm9_v1_chr2_-_34681496_34681692	0.140437	bHLH_family.p2	X54352|Fbxw2|30050|F-box and WD-40 domain protein 2	AK009893|Fbxw2|30050|F-box and WD-40 domain protein 2
mm9_v1_chrX_-_149204003_149204188	0.140312	bHLH_family.p2	DQ358971|Shroom2|110380|shroom family member 2	NM_172441|Shroom2|110380|shroom family member 2	EF071946|Shroom2|110380|shroom family member 2
mm9_v1_chr5_-_101148612_101148765	0.140264	bHLH_family.p2	AY151051|Hpse|15442|heparanase	AY077467|Hpse|15442|heparanase	AF359507|Hpse|15442|heparanase	BC138782|Hpse|15442|heparanase	BC138784|Hpse|15442|heparanase	AK040471|Hpse|15442|heparanase	AK154628|Hpse|15442|heparanase	NM_152803|Hpse|15442|heparanase	AK087283|Hpse|15442|heparanase
mm9_v1_chr15_+_101904203_101904238	0.140095	bHLH_family.p2	NM_145625|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr8_+_69221320_69221371	0.1398	bHLH_family.p2	AK132397|Npy1r|18166|neuropeptide Y receptor Y1	NM_010934|Npy1r|18166|neuropeptide Y receptor Y1	D63819|Npy1r|18166|neuropeptide Y receptor Y1
mm9_v1_chr12_+_111805938_111806039	0.13965	bHLH_family.p2	AK047089|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK178752|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK196801|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK201559|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK211769|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr2_-_117168706_117168751	0.139619	bHLH_family.p2	AK141524|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr5_+_124562306_124562355	0.139403	bHLH_family.p2	AK168946|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	BC069872|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004943|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK017497|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK018534|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	NM_025671|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004916|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm9_v1_chr2_+_180191031_180191048	0.138807	bHLH_family.p2	AK033598|Slco4a1|108115|solute carrier organic anion transporter family, member 4a1	AK172688|Slco4a1|108115|solute carrier organic anion transporter family, member 4a1
mm9_v1_chr15_-_83082156_83082203	0.138539	bHLH_family.p2	AK149186|A4galt|239559|alpha 1,4-galactosyltransferase	AK162529|A4galt|239559|alpha 1,4-galactosyltransferase	AY371179|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001170954|A4galt|239559|alpha 1,4-galactosyltransferase	AK139833|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001004150|A4galt|239559|alpha 1,4-galactosyltransferase
mm9_v1_chr10_+_66559194_66559239	0.138336	bHLH_family.p2	AK140633|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr15_-_76059926_76059969	0.138212	bHLH_family.p2	AF188019|Plec|18810|plectin	AY480034|Plec|18810|plectin	NM_201385|Plec|18810|plectin
mm9_v1_chr17_+_35383898_35384035	0.13815	bHLH_family.p2	AK194985|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	AK195134|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	AK217230|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm9_v1_chr2_-_80287218_80287228	0.138003	bHLH_family.p2	AK019093|Frzb|20378|frizzled-related protein
mm9_v1_chr18_+_38115192_38115292	0.137946	bHLH_family.p2	NM_153793|Rell2|225392|RELT-like 2	AK044097|Rell2|225392|RELT-like 2	BC038500|Rell2|225392|RELT-like 2
mm9_v1_chr11_+_58791594_58791614	0.13786	bHLH_family.p2	AK040618|Trim11|94091|tripartite motif-containing 11	AK170855|Trim11|94091|tripartite motif-containing 11	AK157332|Trim11|94091|tripartite motif-containing 11	AK139477|Trim11|94091|tripartite motif-containing 11
mm9_v1_chr5_+_148241736_148241750	0.137818	bHLH_family.p2	AK153632|Pan3|72587|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr3_-_88893885_88893966	0.137799	bHLH_family.p2	AK170210|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083808|Rusc1|72296|RUN and SH3 domain containing 1	AK170012|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr19_+_29038435_29038489	0.137694	bHLH_family.p2	BC052412|Ppapdc2|74411|phosphatidic acid phosphatase type 2 domain containing 2
mm9_v1_chr1_+_75356906_75356910	0.137538	bHLH_family.p2	AK131922|Des|13346|desmin	L22550|Des|13346|desmin
mm9_v1_chr15_+_84867491_84867575	0.137459	bHLH_family.p2	NM_133750|Fam118a|73225|family with sequence similarity 118, member A	NM_177067|Fam118a|73225|family with sequence similarity 118, member A	AK143690|Fam118a|73225|family with sequence similarity 118, member A	AK082151|Fam118a|73225|family with sequence similarity 118, member A	BC066174|Fam118a|73225|family with sequence similarity 118, member A
mm9_v1_chr7_-_52379703_52379767	0.137362	bHLH_family.p2	AK150738|Rps11|27207|ribosomal protein S11	BC012641|Rps11|27207|ribosomal protein S11	NM_013725|Rps11|27207|ribosomal protein S11
mm9_v1_chrX_+_133200913_133200976	0.137167	bHLH_family.p2	NM_001029978|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK158996|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr17_-_25969869_25969905	0.136552	bHLH_family.p2	AK166630|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK158595|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr16_+_20611637_20611755	0.136407	bHLH_family.p2	AK007407|Ece2|107522|endothelin converting enzyme 2	AK007791|Ece2|107522|endothelin converting enzyme 2	BC115541|Ece2|107522|endothelin converting enzyme 2	BC115542|Ece2|107522|endothelin converting enzyme 2	NM_025462|Ece2|107522|endothelin converting enzyme 2	NM_177940|Ece2|107522|endothelin converting enzyme 2	NM_177941|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr9_-_58160769_58160855	0.136303	bHLH_family.p2	AF357006|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr7_-_138554028_138554053	0.136227	bHLH_family.p2	AK088289|Ikzf5|67143|IKAROS family zinc finger 5
mm9_v1_chr4_-_155265815_155265893	0.136036	bHLH_family.p2	AK160236|Pusl1|433813|pseudouridylate synthase-like 1	BC106194|Pusl1|433813|pseudouridylate synthase-like 1	AK151452|Pusl1|433813|pseudouridylate synthase-like 1	NM_001033490|Pusl1|433813|pseudouridylate synthase-like 1
mm9_v1_chr4_+_126287109_126287125	0.135974	bHLH_family.p2	AK077438|5730409E04Rik|230757|RIKEN cDNA 5730409E04Rik gene
mm9_v1_chr3_-_8964045_8964059	0.135785	bHLH_family.p2	AY048852|Tpd52|21985|tumor protein D52	NM_001025261|Tpd52|21985|tumor protein D52	NM_001025262|Tpd52|21985|tumor protein D52
mm9_v1_chr16_+_5233683_5233739	0.13577	bHLH_family.p2	AK145871|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)	NM_145362|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)	BC011281|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)
mm9_v1_chr3_+_31801595_31801757	0.134922	bHLH_family.p2	AK012400|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC046227|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	BC058957|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2	NM_028231|Kcnmb2|72413|potassium large conductance calcium-activated channel, subfamily M, beta member 2
mm9_v1_chr13_-_58228398_58228433	0.134687	bHLH_family.p2	AK172180|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr16_-_34514112_34514198	0.134395	bHLH_family.p2	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chrX_+_70232662_70232703	0.134246	bHLH_family.p2	NM_001109043|Zfp185|22673|zinc finger protein 185	NM_009549|Zfp185|22673|zinc finger protein 185	AK048188|Zfp185|22673|zinc finger protein 185	EF494744|Zfp185|22673|zinc finger protein 185
mm9_v1_chr3_-_105604199_105604320	0.133932	bHLH_family.p2	AK152504|Rap1a|109905|RAS-related protein-1a	AK030897|Rap1a|109905|RAS-related protein-1a	BC051419|Rap1a|109905|RAS-related protein-1a	NM_145541|Rap1a|109905|RAS-related protein-1a
mm9_v1_chr12_+_70397751_70397780	0.133786	bHLH_family.p2	AK009481|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr14_+_61791811_61791874	0.133612	bHLH_family.p2	AK053626|Sacs|50720|sacsin	AK052467|Sacs|50720|sacsin
mm9_v1_chr17_-_33822327_33822413	0.133454	bHLH_family.p2	BC035525|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK159848|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC017539|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC065172|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK168347|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK133911|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK166670|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK169101|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK171892|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK145343|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK011521|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK051976|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK220299|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_001109913|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_029804|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr9_+_123387818_123387943	0.133287	bHLH_family.p2	NM_013860|Limd1|29806|LIM domains containing 1	AJ132409|Limd1|29806|LIM domains containing 1	AK047198|Limd1|29806|LIM domains containing 1	BC023371|Limd1|29806|LIM domains containing 1	AK083970|Limd1|29806|LIM domains containing 1	BC056449|Limd1|29806|LIM domains containing 1
mm9_v1_chr1_+_24685377_24685468	0.133221	bHLH_family.p2	NM_026719|Lmbrd1|68421|LMBR1 domain containing 1	BC039053|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr18_+_37975071_37975186	0.133156	bHLH_family.p2	AK139465|Pcdhgc4|93707|protocadherin gamma subfamily C, 4	AY013812|Pcdhgc4|93707|protocadherin gamma subfamily C, 4
mm9_v1_chr6_+_125046576_125046586	0.132692	bHLH_family.p2	AK020564|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr5_+_142877419_142877473	0.132075	bHLH_family.p2	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr11_-_31270060_31270077	0.13205	bHLH_family.p2	AF031035|Stc2|20856|stanniocalcin 2	NM_011491|Stc2|20856|stanniocalcin 2
mm9_v1_chr19_+_7131234_7131258	0.131808	bHLH_family.p2	NM_134147|Macrod1|107227|MACRO domain containing 1
mm9_v1_chr5_-_5559500_5559542	0.131028	bHLH_family.p2	NM_153116|Gtpbp10|207704|GTP-binding protein 10 (putative)	BC034507|Gtpbp10|207704|GTP-binding protein 10 (putative)	AK139595|Gtpbp10|207704|GTP-binding protein 10 (putative)	AK160252|Gtpbp10|207704|GTP-binding protein 10 (putative)
mm9_v1_chr11_-_116485513_116485568	0.13092	bHLH_family.p2	BC052182|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AK154639|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AK042365|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AK171085|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	NM_001167680|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)	AY167043|Rhbdf2|217344|rhomboid 5 homolog 2 (Drosophila)
mm9_v1_chr13_-_58316960_58317026	0.130773	bHLH_family.p2	BC080667|Ubqln1|56085|ubiquilin 1	AK165456|Ubqln1|56085|ubiquilin 1	AK172695|Ubqln1|56085|ubiquilin 1	BC026847|Ubqln1|56085|ubiquilin 1	NM_026842|Ubqln1|56085|ubiquilin 1	NM_152234|Ubqln1|56085|ubiquilin 1
mm9_v1_chr19_-_12869863_12869990	0.130723	bHLH_family.p2	AK147502|Zfp91|109910|zinc finger protein 91
mm9_v1_chr8_+_73051625_73051647	0.13051	bHLH_family.p2	AK170993|Fkbp8|14232|FK506 binding protein 8	NM_001111066|Fkbp8|14232|FK506 binding protein 8	NM_010223|Fkbp8|14232|FK506 binding protein 8	AK152198|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr16_-_28929698_28929810	0.130477	bHLH_family.p2	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr7_-_133645796_133645958	0.130432	bHLH_family.p2	AK158626|Atxn2l|233871|ataxin 2-like	AK168745|Atxn2l|233871|ataxin 2-like
mm9_v1_chr3_+_54559503_54559503	0.130306	bHLH_family.p2	AK137411|Smad9|55994|MAD homolog 9 (Drosophila)	NM_019483|Smad9|55994|MAD homolog 9 (Drosophila)
mm9_v1_chr1_-_188529867_188529872	0.129661	bHLH_family.p2	X57413|Tgfb2|21808|transforming growth factor, beta 2	NM_009367|Tgfb2|21808|transforming growth factor, beta 2
mm9_v1_chr2_-_118982663_118982690	0.129607	bHLH_family.p2	BC055754|Fam82a2|67809|family with sequence similarity 82, member A2	AK165302|Fam82a2|67809|family with sequence similarity 82, member A2	AK146299|Fam82a2|67809|family with sequence similarity 82, member A2	AK153369|Fam82a2|67809|family with sequence similarity 82, member A2	AK151090|Fam82a2|67809|family with sequence similarity 82, member A2	AK153322|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr9_+_40494347_40494411	0.129283	bHLH_family.p2	AY326421|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene
mm9_v1_chr6_+_66986637_66986648	0.129274	bHLH_family.p2	AK054076|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr1_+_157887985_157888091	0.128712	bHLH_family.p2	NM_001160181|Tor1aip2|240832|torsin A interacting protein 2	NM_022329|Tor1aip2|240832|torsin A interacting protein 2	AK152137|Tor1aip2|240832|torsin A interacting protein 2	AK080959|Tor1aip2|240832|torsin A interacting protein 2	AK150303|Tor1aip2|240832|torsin A interacting protein 2	AK151453|Tor1aip2|240832|torsin A interacting protein 2	AJ251363|Tor1aip2|240832|torsin A interacting protein 2	BC064017|Tor1aip2|240832|torsin A interacting protein 2	BC092059|Tor1aip2|240832|torsin A interacting protein 2	AK216254|Tor1aip2|240832|torsin A interacting protein 2	BC039927|Tor1aip2|240832|torsin A interacting protein 2	AK003852|Tor1aip2|240832|torsin A interacting protein 2	AK032697|Tor1aip2|240832|torsin A interacting protein 2	BC053726|Tor1aip2|240832|torsin A interacting protein 2	AK182358|Tor1aip2|240832|torsin A interacting protein 2	AK203799|Tor1aip2|240832|torsin A interacting protein 2	AK212068|Tor1aip2|240832|torsin A interacting protein 2	AK212760|Tor1aip2|240832|torsin A interacting protein 2	AK214292|Tor1aip2|240832|torsin A interacting protein 2	AK218632|Tor1aip2|240832|torsin A interacting protein 2	AK219881|Tor1aip2|240832|torsin A interacting protein 2	AK177027|Tor1aip2|240832|torsin A interacting protein 2
mm9_v1_chr8_+_28370796_28370880	0.128672	bHLH_family.p2	NM_007918|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK167836|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	U28656|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	BC002045|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK170031|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK169979|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK013033|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1
mm9_v1_chr15_+_59480237_59480243	0.128632	bHLH_family.p2	AK080228|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chr6_-_48395440_48395605	0.128619	bHLH_family.p2	AK080480|Zfp467|68910|zinc finger protein 467	AK140205|Zfp467|68910|zinc finger protein 467	BC029859|Zfp467|68910|zinc finger protein 467	AK163508|Zfp467|68910|zinc finger protein 467	BC140975|Zfp467|68910|zinc finger protein 467	AB041616|Zfp467|68910|zinc finger protein 467
mm9_v1_chr7_-_133942767_133942800	0.128071	bHLH_family.p2	NM_007438|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr2_-_104250490_104250490	0.128046	bHLH_family.p2	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr6_-_51962458_51962567	0.127378	bHLH_family.p2	AF051324|Skap2|54353|src family associated phosphoprotein 2	AB014485|Skap2|54353|src family associated phosphoprotein 2	AK144289|Skap2|54353|src family associated phosphoprotein 2	AK076000|Skap2|54353|src family associated phosphoprotein 2	AK172297|Skap2|54353|src family associated phosphoprotein 2	BC003711|Skap2|54353|src family associated phosphoprotein 2	NM_018773|Skap2|54353|src family associated phosphoprotein 2
mm9_v1_chr9_-_13631432_13631439	0.127035	bHLH_family.p2	AK019414|Cep57|74360|centrosomal protein 57	AK167523|Cep57|74360|centrosomal protein 57
mm9_v1_chr6_-_116623789_116623853	0.126953	bHLH_family.p2	AK139284|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK170955|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	BC023245|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK089460|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	BC060709|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK036528|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK053578|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK151561|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK152639|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK164357|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK160584|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	AK171198|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4	NM_178045|Rassf4|213391|Ras association (RalGDS/AF-6) domain family member 4
mm9_v1_chr3_+_96962930_96963018	0.126836	bHLH_family.p2	BC047276|Acp6|66659|acid phosphatase 6, lysophosphatidic	AK089736|Acp6|66659|acid phosphatase 6, lysophosphatidic
mm9_v1_chr18_-_36838969_36839019	0.126689	bHLH_family.p2	AK171634|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3	BC024809|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3	NM_146085|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr6_+_22238226_22238287	0.126607	bHLH_family.p2	AK053805|Wnt16|93735|wingless-related MMTV integration site 16	NM_053116|Wnt16|93735|wingless-related MMTV integration site 16	AK054110|Wnt16|93735|wingless-related MMTV integration site 16	BC115811|Wnt16|93735|wingless-related MMTV integration site 16	BC115925|Wnt16|93735|wingless-related MMTV integration site 16	AK043534|Wnt16|93735|wingless-related MMTV integration site 16
mm9_v1_chr10_+_80568647_80568919	0.126568	bHLH_family.p2	AK080574|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK172055|Map2k2|26396|mitogen-activated protein kinase kinase 2	NM_023138|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK171584|Map2k2|26396|mitogen-activated protein kinase kinase 2	BC014830|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK143425|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK138130|Map2k2|26396|mitogen-activated protein kinase kinase 2	S68267|Map2k2|26396|mitogen-activated protein kinase kinase 2
mm9_v1_chr9_+_50561315_50561342	0.126477	bHLH_family.p2	AK168999|Cryab|12955|crystallin, alpha B
mm9_v1_chr8_-_125201971_125202083	0.125953	bHLH_family.p2	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr4_+_41707341_41707397	0.125361	bHLH_family.p2	AK146742|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	AK155407|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	AK159559|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	U14412|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	BC004619|Il11ra1|16157|interleukin 11 receptor, alpha chain 1
mm9_v1_chr10_-_105278374_105278437	0.124944	bHLH_family.p2	BC067068|BC067068|216292|cDNA sequence BC067068	AK144620|BC067068|216292|cDNA sequence BC067068	AK148535|BC067068|216292|cDNA sequence BC067068	NM_207522|BC067068|216292|cDNA sequence BC067068
mm9_v1_chr3_+_84781329_84781358	0.124915	bHLH_family.p2	
mm9_v1_chr2_+_172196161_172196250	0.124834	bHLH_family.p2	AK145001|Cstf1|67337|cleavage stimulation factor, 3' pre-RNA, subunit 1
mm9_v1_chr2_+_152788220_152788276	0.124618	bHLH_family.p2	AK006027|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	NM_001083618|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	NM_029064|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	AK015388|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	AK015740|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	BC130024|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	BC148285|Ttll9|74711|tubulin tyrosine ligase-like family, member 9	AM690753|Ttll9|74711|tubulin tyrosine ligase-like family, member 9
mm9_v1_chr5_+_53132872_53132957	0.124523	bHLH_family.p2	BC062144|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AF411321|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta
mm9_v1_chr3_+_129235284_129235325	0.124491	bHLH_family.p2	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr4_+_116799417_116799417	0.124429	bHLH_family.p2	AK029345|Tctex1d4|242646|Tctex1 domain containing 4	NM_175030|Tctex1d4|242646|Tctex1 domain containing 4
mm9_v1_chrX_-_71167183_71167282	0.124106	bHLH_family.p2	BC027219|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK009697|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK014469|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK003806|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AK078700|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AY183136|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	AY183137|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	NM_001177965|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10	NM_019870|Naa10|56292|N(alpha)-acetyltransferase 10, NatA catalytic subunitNalpha acetyltransferase 10
mm9_v1_chr11_-_5965555_5965582	0.123738	bHLH_family.p2	BC024803|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	X63615|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta	AK163698|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta
mm9_v1_chrX_-_148802653_148802653	0.123673	bHLH_family.p2	BC096520|Gpr173|70771|G-protein coupled receptor 173	NM_027543|Gpr173|70771|G-protein coupled receptor 173
mm9_v1_chr7_+_134985164_134985421	0.123546	bHLH_family.p2	AK145909|Stx4a|20909|syntaxin 4A (placental)	BC011491|Stx4a|20909|syntaxin 4A (placental)	NM_009294|Stx4a|20909|syntaxin 4A (placental)	AK161971|Stx4a|20909|syntaxin 4A (placental)	BC052023|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr19_+_59017874_59017915	0.123433	bHLH_family.p2	NM_178689|Eno4|226265|enolase 4	AK032395|Eno4|226265|enolase 4
mm9_v1_chr9_-_106794266_106794289	0.12333	bHLH_family.p2	AK167580|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK131997|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	NM_029103|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC022761|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chrX_-_156576312_156576363	0.123158	bHLH_family.p2	AK168152|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK169289|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK145718|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr10_+_80720251_80720289	0.122878	bHLH_family.p2	AK079816|Matk|17179|megakaryocyte-associated tyrosine kinase	U05210|Matk|17179|megakaryocyte-associated tyrosine kinase	L27738|Matk|17179|megakaryocyte-associated tyrosine kinase	NM_010768|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chrX_+_131291100_131291196	0.12282	bHLH_family.p2	NM_027870|Armcx3|71703|armadillo repeat containing, X-linked 3	AK030729|Armcx3|71703|armadillo repeat containing, X-linked 3	AK004598|Armcx3|71703|armadillo repeat containing, X-linked 3	BC051113|Armcx3|71703|armadillo repeat containing, X-linked 3	BC108360|Armcx3|71703|armadillo repeat containing, X-linked 3
mm9_v1_chr5_+_27588579_27588623	0.122582	bHLH_family.p2	BC048383|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr8_-_74035667_74035683	0.122482	bHLH_family.p2	NM_032398|Plvap|84094|plasmalemma vesicle associated protein
mm9_v1_chr11_-_77538784_77538787	0.122463	bHLH_family.p2	M21473|Cryba1|12957|crystallin, beta A1
mm9_v1_chr1_+_92949986_92950162	0.12237	bHLH_family.p2	AK077637|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_001111311|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_008515|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK134120|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK133661|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AF045573|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144955|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144956|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC145642|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr4_+_45903174_45903208	0.122253	bHLH_family.p2	NM_198660|E230008N13Rik|381522|RIKEN cDNA E230008N13 gene
mm9_v1_chr7_+_52580310_52580328	0.121975	bHLH_family.p2	EF437339|Rpl14-ps1|100040970|ribosomal protein L14, pseudogene 1
mm9_v1_chr16_-_36874886_36874911	0.121876	bHLH_family.p2	BC056626|Eaf2|106389|ELL associated factor 2	NM_134111|Eaf2|106389|ELL associated factor 2
mm9_v1_chr13_+_59234737_59234835	0.121801	bHLH_family.p2	AK021108|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr4_-_43058685_43058696	0.121785	bHLH_family.p2	BC044832|B230312A22Rik|230088|RIKEN cDNA B230312A22 gene
mm9_v1_chr5_+_137437946_137437998	0.121671	bHLH_family.p2	NM_025562|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008078|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008323|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	BC010783|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK004479|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK004917|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)	AK008916|Fis1|66437|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm9_v1_chr10_-_117282901_117283016	0.121666	bHLH_family.p2	BC147390|Rap1b|215449|RAS related protein 1b	BC147391|Rap1b|215449|RAS related protein 1b	AK178034|Rap1b|215449|RAS related protein 1b	AK196093|Rap1b|215449|RAS related protein 1b	AK199293|Rap1b|215449|RAS related protein 1b	AK218552|Rap1b|215449|RAS related protein 1b	BC033382|Rap1b|215449|RAS related protein 1b	BC094066|Rap1b|215449|RAS related protein 1b	AK167548|Rap1b|215449|RAS related protein 1b	AK153870|Rap1b|215449|RAS related protein 1b	AK143910|Rap1b|215449|RAS related protein 1b
mm9_v1_chr19_+_56471731_56471767	0.121506	bHLH_family.p2	AK154978|Casp7|12369|caspase 7	BC005428|Casp7|12369|caspase 7	D86353|Casp7|12369|caspase 7
mm9_v1_chr5_-_137774729_137774738	0.121454	bHLH_family.p2	BC046982|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9
mm9_v1_chr3_-_84024766_84024812	0.120878	bHLH_family.p2	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr9_-_96378951_96379045	0.120845	bHLH_family.p2	AK007588|Rnf7|19823|ring finger protein 7	BC011127|Rnf7|19823|ring finger protein 7	AK002628|Rnf7|19823|ring finger protein 7	AK003248|Rnf7|19823|ring finger protein 7	AK003963|Rnf7|19823|ring finger protein 7	AK011328|Rnf7|19823|ring finger protein 7	AK146030|Rnf7|19823|ring finger protein 7	NM_011279|Rnf7|19823|ring finger protein 7	AF092877|Rnf7|19823|ring finger protein 7
mm9_v1_chr3_+_21975544_21975859	0.120811	bHLH_family.p2	AK036064|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	NM_030732|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	AK033347|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1
mm9_v1_chr3_-_58329346_58329433	0.120684	bHLH_family.p2	AK178735|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK179107|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK185536|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK190535|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK194381|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK195463|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK209611|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr3_+_106904470_106904486	0.120683	bHLH_family.p2	AK044342|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2	NM_008417|Kcna2|16490|potassium voltage-gated channel, shaker-related subfamily, member 2
mm9_v1_chr17_+_36116868_36116882	0.120645	bHLH_family.p2	BC013243|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr1_+_182499015_182499087	0.120643	bHLH_family.p2	AK135977|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK159433|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK166104|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	X14206|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK028042|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK146677|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK165158|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK169326|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK152360|Parp1|11545|poly (ADP-ribose) polymerase family, member 1
mm9_v1_chr8_-_126544907_126544994	0.120485	bHLH_family.p2	AK033477|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr15_+_81416643_81416789	0.120456	bHLH_family.p2	NM_177821|Ep300|328572|E1A binding protein p300	AK042627|Ep300|328572|E1A binding protein p300	BC144976|Ep300|328572|E1A binding protein p300	BC150681|Ep300|328572|E1A binding protein p300
mm9_v1_chr4_-_19497166_19497254	0.120424	bHLH_family.p2	BC036983|Cpne3|70568|copine III	AK220348|Cpne3|70568|copine III	AK146324|Cpne3|70568|copine III	AK017357|Cpne3|70568|copine III	AK036664|Cpne3|70568|copine III	NM_027769|Cpne3|70568|copine III	AK017651|Cpne3|70568|copine III
mm9_v1_chr17_-_43013320_43013409	0.120362	bHLH_family.p2	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr3_-_107499387_107499429	0.120178	bHLH_family.p2	AK087454|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr16_-_18089085_18089282	0.120122	bHLH_family.p2	BC125327|Prodh|19125|proline dehydrogenase	BC008548|Prodh|19125|proline dehydrogenase	U80020|Prodh|19125|proline dehydrogenase	AF120279|Prodh|19125|proline dehydrogenase	AK144068|Prodh|19125|proline dehydrogenase	AK085938|Prodh|19125|proline dehydrogenase	NM_011172|Prodh|19125|proline dehydrogenase
mm9_v1_chr3_+_64913564_64913693	0.120113	bHLH_family.p2	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr10_-_80039973_80040065	0.119963	bHLH_family.p2	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chr2_+_75670296_75670394	0.119675	bHLH_family.p2	AK031154|Agps|228061|alkylglycerone phosphate synthase	AK042745|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr18_-_61371233_61371266	0.119651	bHLH_family.p2	AK052942|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2	NM_007885|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2
mm9_v1_chr12_+_88367442_88367513	0.119495	bHLH_family.p2	AK034410|Tmem63c|217733|transmembrane protein 63c	AK043536|Tmem63c|217733|transmembrane protein 63c	BC056936|Tmem63c|217733|transmembrane protein 63c	BC057088|Tmem63c|217733|transmembrane protein 63c	NM_172583|Tmem63c|217733|transmembrane protein 63c
mm9_v1_chr11_-_70223517_70223527	0.11927	bHLH_family.p2	BC090620|Pelp1|75273|proline, glutamic acid and leucine rich protein 1
mm9_v1_chr10_-_84647533_84647834	0.119168	bHLH_family.p2	AF156986|Cry1|12952|cryptochrome 1 (photolyase-like)	BC022174|Cry1|12952|cryptochrome 1 (photolyase-like)	AK162460|Cry1|12952|cryptochrome 1 (photolyase-like)	BC085499|Cry1|12952|cryptochrome 1 (photolyase-like)	NM_007771|Cry1|12952|cryptochrome 1 (photolyase-like)	AK133818|Cry1|12952|cryptochrome 1 (photolyase-like)
mm9_v1_chr14_+_65977510_65977519	0.119007	bHLH_family.p2	AK155538|Zfp395|380912|zinc finger protein 395	NM_199029|Zfp395|380912|zinc finger protein 395
mm9_v1_chrX_+_97170927_97171053	0.118816	bHLH_family.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr2_-_152223287_152223490	0.118341	bHLH_family.p2	U70442|Sox12|20667|SRY-box containing gene 12	Z18961|Sox12|20667|SRY-box containing gene 12
mm9_v1_chr6_-_122692526_122692557	0.118127	bHLH_family.p2	AK164286|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	AK028041|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	AK045328|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	AK147258|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr17_-_71351523_71351579	0.117745	bHLH_family.p2	AK045160|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK168016|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK018348|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK159151|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	BC020282|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK167553|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK151265|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK013776|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr5_+_120961136_120961273	0.117608	bHLH_family.p2	AF261233|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_001177594|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_001177595|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	NM_133221|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	AK157173|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	AK028537|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6	BC043689|Slc24a6|170756|solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
mm9_v1_chr3_-_142544883_142544984	0.117467	bHLH_family.p2	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr17_-_33961403_33961506	0.117457	bHLH_family.p2	U11248|Rps28|54127|ribosomal protein S28	BC010987|Rps28|54127|ribosomal protein S28	AK002919|Rps28|54127|ribosomal protein S28	BC090982|Rps28|54127|ribosomal protein S28	NM_016844|Rps28|54127|ribosomal protein S28	BC125644|Rps28|54127|ribosomal protein S28	BC125646|Rps28|54127|ribosomal protein S28
mm9_v1_chr9_-_21043659_21043781	0.117406	bHLH_family.p2	AK150437|Keap1|50868|kelch-like ECH-associated protein 1	AK152142|Keap1|50868|kelch-like ECH-associated protein 1	AK004738|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110305|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110306|Keap1|50868|kelch-like ECH-associated protein 1	NM_001110307|Keap1|50868|kelch-like ECH-associated protein 1	NM_016679|Keap1|50868|kelch-like ECH-associated protein 1
mm9_v1_chr1_+_120218417_120218424	0.117354	bHLH_family.p2	NM_026472|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK077770|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chr14_+_55059393_55059736	0.117274	bHLH_family.p2	AK212295|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK186724|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK183589|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK218925|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK212401|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr16_-_92697567_92697590	0.117068	bHLH_family.p2	AK155262|Runx1|12394|runt related transcription factor 1	D26532|Runx1|12394|runt related transcription factor 1	NM_001111023|Runx1|12394|runt related transcription factor 1	NM_009821|Runx1|12394|runt related transcription factor 1
mm9_v1_chr15_+_58720783_58720964	0.116765	bHLH_family.p2	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr2_+_31526229_31526258	0.116656	bHLH_family.p2	BC021807|Exosc2|227715|exosome component 2	AK164618|Exosc2|227715|exosome component 2	AK166881|Exosc2|227715|exosome component 2	AK144234|Exosc2|227715|exosome component 2	BC021485|Exosc2|227715|exosome component 2	NM_144886|Exosc2|227715|exosome component 2
mm9_v1_chr19_+_29596741_29596874	0.116118	bHLH_family.p2	NM_001081319|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	AK048394|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	AK156653|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	BC125448|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene	BC132346|C030046E11Rik|226089|RIKEN cDNA C030046E11 gene
mm9_v1_chr6_+_91634056_91634194	0.116051	bHLH_family.p2	NM_009320|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK041141|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	L03292|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK143510|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	AK162776|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6	BC015245|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm9_v1_chr16_+_57121995_57122259	0.116022	bHLH_family.p2	AK181660|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK192263|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK195397|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK196165|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK202736|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr11_+_59918557_59918675	0.115892	bHLH_family.p2	AK154252|Rai1|19377|retinoic acid induced 1
mm9_v1_chr7_-_81429262_81429274	0.11589	bHLH_family.p2	AK020010|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1
mm9_v1_chr11_-_115473816_115473816	0.115805	bHLH_family.p2	BC055812|Mif4gd|69674|MIF4G domain containing	NM_027162|Mif4gd|69674|MIF4G domain containing
mm9_v1_chr7_+_4967081_4967115	0.115549	bHLH_family.p2	AK154328|Zfp524|66056|zinc finger protein 524	BC019995|Zfp524|66056|zinc finger protein 524	AK011620|Zfp524|66056|zinc finger protein 524	NM_025324|Zfp524|66056|zinc finger protein 524	AK009053|Zfp524|66056|zinc finger protein 524	AK002594|Zfp524|66056|zinc finger protein 524
mm9_v1_chr14_+_122506310_122506616	0.115365	bHLH_family.p2	AK088905|Tm9sf2|68059|transmembrane 9 superfamily member 2	AK010325|Tm9sf2|68059|transmembrane 9 superfamily member 2	AK050338|Tm9sf2|68059|transmembrane 9 superfamily member 2	AK159757|Tm9sf2|68059|transmembrane 9 superfamily member 2	BC003862|Tm9sf2|68059|transmembrane 9 superfamily member 2	AK030340|Tm9sf2|68059|transmembrane 9 superfamily member 2	AK048012|Tm9sf2|68059|transmembrane 9 superfamily member 2	AK179766|Tm9sf2|68059|transmembrane 9 superfamily member 2
mm9_v1_chr17_-_25377052_25377092	0.115249	bHLH_family.p2	BC055872|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	NM_172529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	BC023869|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK044021|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AK078230|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit	AY465529|Gnptg|214505|N-acetylglucosamine-1-phosphotransferase, gamma subunit
mm9_v1_chr4_+_119486921_119486941	0.115115	bHLH_family.p2	AK035881|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr17_+_34169289_34169362	0.115019	bHLH_family.p2	M84818|Rxrb|20182|retinoid X receptor beta	BC019432|Rxrb|20182|retinoid X receptor beta
mm9_v1_chr11_-_93829704_93829834	0.114892	bHLH_family.p2	NM_008704|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr10_-_31165613_31165628	0.114628	bHLH_family.p2	BC141068|Tpd52l1|21987|tumor protein D52-like 1	BC145321|Tpd52l1|21987|tumor protein D52-like 1	BC145322|Tpd52l1|21987|tumor protein D52-like 1	BC171924|Tpd52l1|21987|tumor protein D52-like 1	AK131855|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr10_+_69707965_69708068	0.114306	bHLH_family.p2	AK004684|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	AK004556|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	NM_025807|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	BC055839|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9	BC034205|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm9_v1_chr5_+_122161617_122161617	0.113497	bHLH_family.p2	AF041472|Atxn2|20239|ataxin 2	NM_009125|Atxn2|20239|ataxin 2
mm9_v1_chr7_-_28338127_28338176	0.113451	bHLH_family.p2	BC068170|Pld3|18807|phospholipase D family, member 3	AF026124|Pld3|18807|phospholipase D family, member 3	NM_011116|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr9_-_121404750_121404785	0.113361	bHLH_family.p2	BC028487|Cck|12424|cholecystokinin	AK002677|Cck|12424|cholecystokinin
mm9_v1_chr19_-_6984020_6984224	0.113168	bHLH_family.p2	AF110733|Prdx5|54683|peroxiredoxin 5	AK136130|Prdx5|54683|peroxiredoxin 5	AK002383|Prdx5|54683|peroxiredoxin 5	AK003332|Prdx5|54683|peroxiredoxin 5	AK152653|Prdx5|54683|peroxiredoxin 5	AF197951|Prdx5|54683|peroxiredoxin 5	NM_012021|Prdx5|54683|peroxiredoxin 5	AF124994|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr4_+_21703416_21703444	0.112935	bHLH_family.p2	AK040660|Usp45|77593|ubiquitin specific petidase 45	AK162825|Usp45|77593|ubiquitin specific petidase 45	NM_152825|Usp45|77593|ubiquitin specific petidase 45	AK088073|Usp45|77593|ubiquitin specific petidase 45	BC027768|Usp45|77593|ubiquitin specific petidase 45
mm9_v1_chr5_-_100465086_100465197	0.112915	bHLH_family.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr7_+_86040793_86040943	0.112903	bHLH_family.p2	AK031972|Aen|68048|apoptosis enhancing nuclease	NM_001162939|Aen|68048|apoptosis enhancing nuclease	NM_026531|Aen|68048|apoptosis enhancing nuclease	AK165708|Aen|68048|apoptosis enhancing nuclease	AK012555|Aen|68048|apoptosis enhancing nuclease	AK090056|Aen|68048|apoptosis enhancing nuclease	AK166806|Aen|68048|apoptosis enhancing nuclease	AK167042|Aen|68048|apoptosis enhancing nuclease	AK076421|Aen|68048|apoptosis enhancing nuclease	AK167658|Aen|68048|apoptosis enhancing nuclease	AK017644|Aen|68048|apoptosis enhancing nuclease	AK089090|Aen|68048|apoptosis enhancing nuclease	BC022614|Aen|68048|apoptosis enhancing nuclease
mm9_v1_chr15_+_102865094_102865153	0.112795	bHLH_family.p2	D11329|Hoxc4|15423|homeobox C4	AB221549|Hoxc4|15423|homeobox C4
mm9_v1_chr4_-_135129534_135129534	0.112722	bHLH_family.p2	BC089372|Grhl3|230824|grainyhead-like 3 (Drosophila)	NM_001013756|Grhl3|230824|grainyhead-like 3 (Drosophila)
mm9_v1_chr5_-_114893989_114894069	0.112706	bHLH_family.p2	BC022159|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK034288|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK088785|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK142286|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK020286|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	BC057558|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	NM_029956|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)	AK148421|Mmab|77697|methylmalonic aciduria (cobalamin deficiency) type B homolog (human)
mm9_v1_chr8_+_125372273_125372281	0.111883	bHLH_family.p2	NM_007662|Cdh15|12555|cadherin 15
mm9_v1_chr7_+_71646515_71646591	0.111855	bHLH_family.p2	BC057620|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2	NM_007461|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2
mm9_v1_chr11_-_120012520_120012596	0.111714	bHLH_family.p2	AK007977|Slc38a10|72055|solute carrier family 38, member 10	AK084120|Slc38a10|72055|solute carrier family 38, member 10	AK032245|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr13_-_12742377_12742693	0.111634	bHLH_family.p2	AK190995|Gpr137b|83924|G protein-coupled receptor 137B	AK194643|Gpr137b|83924|G protein-coupled receptor 137B	AK198577|Gpr137b|83924|G protein-coupled receptor 137B	AK201617|Gpr137b|83924|G protein-coupled receptor 137B	AK204136|Gpr137b|83924|G protein-coupled receptor 137B	AK204647|Gpr137b|83924|G protein-coupled receptor 137B	AK195847|Gpr137b|83924|G protein-coupled receptor 137B	AK170650|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	BC093499|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AF154337|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK009736|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK170103|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK087190|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK171335|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene	AK010724|Gpr137b-ps|664862|G protein-coupled receptor 137B, pseudogene
mm9_v1_chr6_+_17587046_17587119	0.11163	bHLH_family.p2	AK150587|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	BC082589|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	NM_007604|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK007550|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AY544984|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK008204|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr10_+_80695899_80695954	0.111049	bHLH_family.p2	NM_001034895|Zfr2|103406|zinc finger RNA binding protein 2	AK165530|Zfr2|103406|zinc finger RNA binding protein 2	BC072571|Zfr2|103406|zinc finger RNA binding protein 2	AK008235|Zfr2|103406|zinc finger RNA binding protein 2
mm9_v1_chr9_-_53475591_53475593	0.110427	bHLH_family.p2	AK018437|Cul5|75717|cullin 5
mm9_v1_chr4_+_11118855_11118930	0.110281	bHLH_family.p2	NM_009830|Ccne2|12448|cyclin E2	AK010929|Ccne2|12448|cyclin E2	AK031116|Ccne2|12448|cyclin E2	AK037791|Ccne2|12448|cyclin E2	AK167428|Ccne2|12448|cyclin E2
mm9_v1_chr8_-_87549120_87549191	0.109693	bHLH_family.p2	BC016453|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	BC083335|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AF039405|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	NM_019652|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK007827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK171690|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr7_-_31348148_31348229	0.109618	bHLH_family.p2	AK002440|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	AK007621|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	AK006284|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	BC024347|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	NM_025498|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	BC081443|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)
mm9_v1_chr2_-_9969885_9970221	0.109269	bHLH_family.p2	AK033848|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AJ292189|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC089030|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC137617|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC137618|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC039989|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC094546|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr17_-_24346280_24346475	0.109263	bHLH_family.p2	BC094362|Ntn3|18209|netrin 3	NM_010947|Ntn3|18209|netrin 3	AK083904|Ntn3|18209|netrin 3	BC053038|Ntn3|18209|netrin 3	AK031199|Ntn3|18209|netrin 3
mm9_v1_chr19_+_43827485_43827551	0.109232	bHLH_family.p2	AK009702|Cutc|66388|cutC copper transporter homolog (E.coli)	NM_001113562|Cutc|66388|cutC copper transporter homolog (E.coli)	NM_025530|Cutc|66388|cutC copper transporter homolog (E.coli)
mm9_v1_chr8_+_122386155_122386279	0.108956	bHLH_family.p2	AK164240|Klhl36|234796|kelch-like 36 (Drosophila)	AK164831|Klhl36|234796|kelch-like 36 (Drosophila)	AK157027|Klhl36|234796|kelch-like 36 (Drosophila)	BC025816|Klhl36|234796|kelch-like 36 (Drosophila)	NM_146219|Klhl36|234796|kelch-like 36 (Drosophila)	AK131135|Klhl36|234796|kelch-like 36 (Drosophila)
mm9_v1_chr13_-_12350266_12350476	0.108949	bHLH_family.p2	BC145683|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	BC145685|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	NM_001081128|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	AK142258|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase	AK037599|Mtr|238505|5-methyltetrahydrofolate-homocysteine methyltransferase
mm9_v1_chr4_-_148511650_148511708	0.108743	bHLH_family.p2	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr14_-_25306261_25306271	0.108695	bHLH_family.p2	NM_001081247|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK170475|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr2_-_26772034_26772049	0.108588	bHLH_family.p2	BC004755|Surf1|20930|surfeit gene 1	NM_013677|Surf1|20930|surfeit gene 1
mm9_v1_chr2_-_79269110_79269144	0.108558	bHLH_family.p2	BC046474|Cerkl|228094|ceramide kinase-like	NM_001048176|Cerkl|228094|ceramide kinase-like
mm9_v1_chr1_-_166388431_166388540	0.108212	bHLH_family.p2	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr11_-_86807135_86807208	0.108158	bHLH_family.p2	BC121190|Ypel2|77864|yippee-like 2 (Drosophila)	AK089126|Ypel2|77864|yippee-like 2 (Drosophila)	AK021387|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr9_-_21038160_21038293	0.107997	bHLH_family.p2	
mm9_v1_chr2_-_148700920_148700989	0.107759	bHLH_family.p2	AK212642|Cst3|13010|cystatin C
mm9_v1_chr4_-_126106749_126106807	0.107653	bHLH_family.p2	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr10_-_79896388_79896431	0.107571	bHLH_family.p2	AK170674|Tcf3|21423|transcription factor 3	NM_001164147|Tcf3|21423|transcription factor 3	NM_001164148|Tcf3|21423|transcription factor 3	NM_001164149|Tcf3|21423|transcription factor 3	NM_001164150|Tcf3|21423|transcription factor 3	NM_001164151|Tcf3|21423|transcription factor 3	NM_001164152|Tcf3|21423|transcription factor 3	NM_001164153|Tcf3|21423|transcription factor 3	NM_011548|Tcf3|21423|transcription factor 3	AK147735|Tcf3|21423|transcription factor 3
mm9_v1_chr15_+_99548019_99548062	0.107559	bHLH_family.p2	AK004565|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	BC019391|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	NM_010271|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	AK220445|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	J02655|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	BC005756|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)
mm9_v1_chr17_+_6079804_6079929	0.107243	bHLH_family.p2	NM_181392|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK084443|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK003547|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK003579|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK011281|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	BC029238|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK013225|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK019011|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK012257|Gtf2h5|66467|general transcription factor IIH, polypeptide 5
mm9_v1_chr15_+_58704189_58704251	0.106576	bHLH_family.p2	NM_026642|Trmt12|68260|tRNA methyltranferase 12 homolog (S. cerevisiae)	AK019481|Trmt12|68260|tRNA methyltranferase 12 homolog (S. cerevisiae)	AK076857|Trmt12|68260|tRNA methyltranferase 12 homolog (S. cerevisiae)	BC052533|Trmt12|68260|tRNA methyltranferase 12 homolog (S. cerevisiae)	BC055850|Trmt12|68260|tRNA methyltranferase 12 homolog (S. cerevisiae)	AK079291|Trmt12|68260|tRNA methyltranferase 12 homolog (S. cerevisiae)	AK031429|Trmt12|68260|tRNA methyltranferase 12 homolog (S. cerevisiae)
mm9_v1_chr15_-_76062991_76063051	0.106361	bHLH_family.p2	AK044559|Plec|18810|plectin
mm9_v1_chr7_-_88851662_88851783	0.106126	bHLH_family.p2	AJ012076|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr6_+_83004687_83004775	0.105999	bHLH_family.p2	AK171202|Aup1|11993|ancient ubiquitous protein 1	AK171011|Aup1|11993|ancient ubiquitous protein 1	AK171184|Aup1|11993|ancient ubiquitous protein 1	BC016485|Aup1|11993|ancient ubiquitous protein 1	AK144497|Aup1|11993|ancient ubiquitous protein 1	AK158035|Aup1|11993|ancient ubiquitous protein 1	AK167335|Aup1|11993|ancient ubiquitous protein 1	AK171249|Aup1|11993|ancient ubiquitous protein 1	AK171541|Aup1|11993|ancient ubiquitous protein 1	U41736|Aup1|11993|ancient ubiquitous protein 1	AK171621|Aup1|11993|ancient ubiquitous protein 1	BC012699|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr7_-_36340918_36340946	0.105977	bHLH_family.p2	BC051553|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	NM_033080|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr8_+_127386922_127387009	0.105936	bHLH_family.p2	NM_010322|Gnpat|14712|glyceronephosphate O-acyltransferase	AK004771|Gnpat|14712|glyceronephosphate O-acyltransferase	AK010896|Gnpat|14712|glyceronephosphate O-acyltransferase	AK004630|Gnpat|14712|glyceronephosphate O-acyltransferase	AK166997|Gnpat|14712|glyceronephosphate O-acyltransferase	AF110769|Gnpat|14712|glyceronephosphate O-acyltransferase	BC003225|Gnpat|14712|glyceronephosphate O-acyltransferase	AK150810|Gnpat|14712|glyceronephosphate O-acyltransferase	BC025972|Gnpat|14712|glyceronephosphate O-acyltransferase
mm9_v1_chrX_-_147531030_147531085	0.105342	bHLH_family.p2	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr10_-_23506981_23507073	0.105194	bHLH_family.p2	BC090257|Rps12|20042|ribosomal protein S12	BC089339|Rps12|20042|ribosomal protein S12	BC092044|Rps12|20042|ribosomal protein S12	BC002079|Rps12|20042|ribosomal protein S12	BC099377|Rps12|20042|ribosomal protein S12	BC089338|Rps12|20042|ribosomal protein S12	AK132208|Rps12|20042|ribosomal protein S12	AK166923|Rps12|20042|ribosomal protein S12	AK166992|Rps12|20042|ribosomal protein S12	BC096653|Rps12|20042|ribosomal protein S12	AK002848|Rps12|20042|ribosomal protein S12	AK008057|Rps12|20042|ribosomal protein S12	AK032757|Rps12|20042|ribosomal protein S12	AK168324|Rps12|20042|ribosomal protein S12	AK169215|Rps12|20042|ribosomal protein S12	NM_011295|Rps12|20042|ribosomal protein S12
mm9_v1_chr12_-_45311020_45311067	0.105131	bHLH_family.p2	AB028857|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	BC096676|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	AK005475|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	NM_013760|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9
mm9_v1_chr3_+_87946446_87946542	0.105067	bHLH_family.p2	S68893|Mef2d|17261|myocyte enhancer factor 2D	S68895|Mef2d|17261|myocyte enhancer factor 2D
mm9_v1_chr19_+_45080961_45081073	0.105018	bHLH_family.p2	BC071195|Peo1|226153|progressive external ophthalmoplegia 1 (human)	NM_153796|Peo1|226153|progressive external ophthalmoplegia 1 (human)
mm9_v1_chr4_+_115823089_115823207	0.104884	bHLH_family.p2	NM_026651|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	NM_029786|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	AK002638|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	AB053220|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	BC011201|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase	AK183969|Pomgnt1|68273|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase
mm9_v1_chr17_-_45705198_45705339	0.104668	bHLH_family.p2	AK192311|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr6_-_120772651_120772678	0.104193	bHLH_family.p2	AK189499|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK186366|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK189578|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK167644|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr2_+_152737083_152737087	0.104157	bHLH_family.p2	AK079396|Mylk2|228785|myosin, light polypeptide kinase 2, skeletal muscle	NM_001081044|Mylk2|228785|myosin, light polypeptide kinase 2, skeletal muscle
mm9_v1_chr10_+_22364816_22364969	0.104044	bHLH_family.p2	AJ549317|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	NM_178934|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK143263|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK028970|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC096454|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK031659|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AY230881|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	AK035972|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC116315|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC116314|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC138316|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12	BC138317|Slc2a12|353169|solute carrier family 2 (facilitated glucose transporter), member 12
mm9_v1_chr7_-_4636141_4636274	0.103849	bHLH_family.p2	AF338351|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm9_v1_chr4_+_116358148_116358251	0.103666	bHLH_family.p2	AK008711|Prdx1|18477|peroxiredoxin 1	AK010688|Prdx1|18477|peroxiredoxin 1	AK083243|Prdx1|18477|peroxiredoxin 1	AK145138|Prdx1|18477|peroxiredoxin 1	AK150797|Prdx1|18477|peroxiredoxin 1	AK151459|Prdx1|18477|peroxiredoxin 1	AK163984|Prdx1|18477|peroxiredoxin 1	NM_011034|Prdx1|18477|peroxiredoxin 1	AK151760|Prdx1|18477|peroxiredoxin 1	AK167624|Prdx1|18477|peroxiredoxin 1	AK169154|Prdx1|18477|peroxiredoxin 1	D21252|Prdx1|18477|peroxiredoxin 1	AK002287|Prdx1|18477|peroxiredoxin 1	D16142|Prdx1|18477|peroxiredoxin 1	BC086648|Prdx1|18477|peroxiredoxin 1	BC083348|Prdx1|18477|peroxiredoxin 1
mm9_v1_chr1_+_158488917_158488917	0.103652	bHLH_family.p2	NM_001136104|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)	NM_009595|Abl2|11352|v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)
mm9_v1_chr3_-_96097855_96097923	0.10357	bHLH_family.p2	BC025535|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143154|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143155|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143156|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143157|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143158|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143159|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143160|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143161|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143162|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143163|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143164|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143165|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143166|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143167|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143168|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143169|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143170|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143171|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143172|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143173|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143174|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143175|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143176|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143177|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143178|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143179|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143180|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143181|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143186|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143187|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143188|Fcgr1|14129|Fc receptor, IgG, high affinity I	X70980|Fcgr1|14129|Fc receptor, IgG, high affinity I	M31314|Fcgr1|14129|Fc receptor, IgG, high affinity I	AK033874|Fcgr1|14129|Fc receptor, IgG, high affinity I	NM_010186|Fcgr1|14129|Fc receptor, IgG, high affinity I
mm9_v1_chr9_+_95538038_95538059	0.102997	bHLH_family.p2	AK010249|Pcolce2|76477|procollagen C-endopeptidase enhancer 2	NM_029620|Pcolce2|76477|procollagen C-endopeptidase enhancer 2
mm9_v1_chr8_+_112790866_112790890	0.10263	bHLH_family.p2	AK043971|Hydin|244653|hydrocephalus inducing	AY173049|Hydin|244653|hydrocephalus inducing	NM_172916|Hydin|244653|hydrocephalus inducing	AK142981|Hydin|244653|hydrocephalus inducing
mm9_v1_chr7_-_134986048_134986052	0.102355	bHLH_family.p2	
mm9_v1_chr1_-_45982242_45982463	0.10235	bHLH_family.p2	AK008700|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF231120|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF215637|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF226613|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	BC003438|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK159855|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK144780|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK147137|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK159294|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK167608|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	NM_016917|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK033987|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1
mm9_v1_chr11_-_60590669_60590737	0.102349	bHLH_family.p2	BC099689|Top3a|21975|topoisomerase (DNA) III alpha
mm9_v1_chr7_-_5013650_5013679	0.102277	bHLH_family.p2	AK148389|Ccdc106|232821|coiled-coil domain containing 106
mm9_v1_chr2_+_148498350_148498409	0.101694	bHLH_family.p2	NM_019761|Nxt1|56488|NTF2-related export protein 1	NM_001110159|Nxt1|56488|NTF2-related export protein 1	AK003254|Nxt1|56488|NTF2-related export protein 1	BC023672|Nxt1|56488|NTF2-related export protein 1	AK168314|Nxt1|56488|NTF2-related export protein 1	AF156958|Nxt1|56488|NTF2-related export protein 1
mm9_v1_chr12_+_41172764_41172922	0.101683	bHLH_family.p2	BC141138|Dock4|238130|dedicator of cytokinesis 4
mm9_v1_chr11_+_4999421_4999441	0.101654	bHLH_family.p2	AK156451|Rhbdd3|279766|rhomboid domain containing 3	AK077457|Rhbdd3|279766|rhomboid domain containing 3	NM_177370|Rhbdd3|279766|rhomboid domain containing 3	AK053223|Rhbdd3|279766|rhomboid domain containing 3
mm9_v1_chr7_+_117161896_117161938	0.1014	bHLH_family.p2	AY316153|Ipo7|233726|importin 7	NM_181517|Ipo7|233726|importin 7
mm9_v1_chr17_+_25377114_25377187	0.101225	bHLH_family.p2	AK158743|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	NM_001163718|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	NM_026676|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK002309|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK003675|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK170074|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	BC089019|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene	AK169072|0610007P22Rik|68327|RIKEN cDNA 0610007P22 gene
mm9_v1_chr7_+_26404382_26404511	0.101219	bHLH_family.p2	AK021146|Atp5sl|66349|ATP5S-like	AK009150|Atp5sl|66349|ATP5S-like	AK002370|Atp5sl|66349|ATP5S-like	AK039669|Atp5sl|66349|ATP5S-like	NM_025504|Atp5sl|66349|ATP5S-like
mm9_v1_chr7_-_134417567_134417570	0.101046	bHLH_family.p2	AK149516|Sephs2|20768|selenophosphate synthetase 2
mm9_v1_chr2_-_30033944_30034014	0.100893	bHLH_family.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr17_+_24857007_24857051	0.100786	bHLH_family.p2	NM_008503|Rps2|16898|ribosomal protein S2
mm9_v1_chrX_-_71618556_71618610	0.100714	bHLH_family.p2	EU599043|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599044|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599045|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	BC027440|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	NM_145406|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr4_+_106584314_106584344	0.100698	bHLH_family.p2	BC003430|Ssbp3|72475|single-stranded DNA binding protein 3	AF500117|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr7_+_52084044_52084057	0.100612	bHLH_family.p2	
mm9_v1_chr13_+_113784052_113784075	0.10045	bHLH_family.p2	BC150962|Gm6320|622408|predicted gene 6320	AK134107|Gm6320|622408|predicted gene 6320	NM_001037914|Gm6320|622408|predicted gene 6320
mm9_v1_chr13_+_34254827_34254896	0.100437	bHLH_family.p2	NM_001101430|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4	NM_001110515|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4	BC070417|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4
mm9_v1_chr15_+_76157905_76157923	0.100269	bHLH_family.p2	AK144062|Exosc4|109075|exosome component 4
mm9_v1_chr8_+_125372328_125372356	0.100208	bHLH_family.p2	BC157978|Cdh15|12555|cadherin 15
mm9_v1_chr12_+_72116953_72117066	0.100185	bHLH_family.p2	NM_001081195|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC025436|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK050594|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK087354|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC080780|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC058209|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AY116674|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)
mm9_v1_chr18_+_58996320_58996417	0.100016	bHLH_family.p2	BC150736|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	AY135183|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	NM_175506|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm9_v1_chr13_+_43493729_43493803	0.0996002	bHLH_family.p2	NM_023554|Nol7|70078|nucleolar protein 7	AK008670|Nol7|70078|nucleolar protein 7	AK019972|Nol7|70078|nucleolar protein 7	AB041566|Nol7|70078|nucleolar protein 7	AK032963|Nol7|70078|nucleolar protein 7	BC130012|Nol7|70078|nucleolar protein 7	BC090637|Nol7|70078|nucleolar protein 7
mm9_v1_chr2_+_26772222_26772291	0.0994492	bHLH_family.p2	AK216211|Surf2|20931|surfeit gene 2	AK004931|Surf2|20931|surfeit gene 2
mm9_v1_chr13_-_34437042_34437162	0.0993402	bHLH_family.p2	AK147397|Slc22a23|73102|solute carrier family 22, member 23	NM_001033167|Slc22a23|73102|solute carrier family 22, member 23
mm9_v1_chr19_+_9026020_9026327	0.0991331	bHLH_family.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr14_-_119105340_119105428	0.0990813	bHLH_family.p2	BC150822|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	BC171974|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	AK157723|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr5_-_144266956_144266980	0.098826	bHLH_family.p2	
mm9_v1_chr4_+_41702080_41702128	0.0988089	bHLH_family.p2	NM_016658|Galt|14430|galactose-1-phosphate uridyl transferase
mm9_v1_chr5_+_137463234_137463356	0.0986826	bHLH_family.p2	AK053320|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK013195|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK033360|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK157741|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm9_v1_chr15_-_34424979_34425004	0.0982514	bHLH_family.p2	NM_008287|Hrsp12|15473|heat-responsive protein 12
mm9_v1_chr6_+_136756830_136756965	0.0979187	bHLH_family.p2	AK053755|H2afj|232440|H2A histone family, member J
mm9_v1_chr4_+_115500670_115500814	0.0977695	bHLH_family.p2	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr7_+_26074512_26074540	0.0977132	bHLH_family.p2	AK082152|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr11_+_53164267_53164268	0.0975897	bHLH_family.p2	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr11_+_114713142_114713183	0.097589	bHLH_family.p2	AK128950|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C
mm9_v1_chr1_+_75432496_75432530	0.0975683	bHLH_family.p2	NM_133708|Gmppa|69080|GDP-mannose pyrophosphorylase A	AK007463|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr8_-_86773599_86773659	0.0974806	bHLH_family.p2	BC024662|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed	AK146163|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed	AK167785|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed	NM_001007571|D8Ertd738e|101966|DNA segment, Chr 8, ERATO Doi 738, expressed
mm9_v1_chr16_-_18235102_18235235	0.0972558	bHLH_family.p2	AY668947|Zdhhc8|27801|zinc finger, DHHC domain containing 8	AY894892|Zdhhc8|27801|zinc finger, DHHC domain containing 8	NM_172151|Zdhhc8|27801|zinc finger, DHHC domain containing 8
mm9_v1_chr9_-_107444441_107444513	0.097186	bHLH_family.p2	AF131206|Cyb561d2|56368|cytochrome b-561 domain containing 2	BC027212|Cyb561d2|56368|cytochrome b-561 domain containing 2
mm9_v1_chr5_+_139626176_139626194	0.0969369	bHLH_family.p2	NM_001081265|Heatr2|433956|HEAT repeat containing 2	BC147492|Heatr2|433956|HEAT repeat containing 2	BC158066|Heatr2|433956|HEAT repeat containing 2
mm9_v1_chr12_-_52930506_52930535	0.0968821	bHLH_family.p2	AK172326|Hectd1|207304|HECT domain containing 1	NM_144788|Hectd1|207304|HECT domain containing 1
mm9_v1_chr7_+_51751957_51752057	0.0968557	bHLH_family.p2	NM_028169|Fam71e1|75538|family with sequence similarity 71, member E1	AK018715|Fam71e1|75538|family with sequence similarity 71, member E1	BC130017|Fam71e1|75538|family with sequence similarity 71, member E1	AK006229|Fam71e1|75538|family with sequence similarity 71, member E1	BC100470|Fam71e1|75538|family with sequence similarity 71, member E1	BC049752|Fam71e1|75538|family with sequence similarity 71, member E1	AK006222|Fam71e1|75538|family with sequence similarity 71, member E1	AB473729|Fam71e1|75538|family with sequence similarity 71, member E1
mm9_v1_chr4_-_138469861_138469885	0.0968422	bHLH_family.p2	NM_028453|Otud3|73162|OTU domain containing 3
mm9_v1_chr19_-_17431079_17431156	0.0967871	bHLH_family.p2	BC039126|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK199888|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK045216|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK167048|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	D87333|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	NM_173442|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr5_+_136612001_136612141	0.096597	bHLH_family.p2	AK008083|Alkbh4|72041|alkB, alkylation repair homolog 4 (E. coli)
mm9_v1_chr5_-_134932407_134932628	0.0963903	bHLH_family.p2	BC057091|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC058964|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF247161|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497637|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497638|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497639|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343348|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343351|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497640|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK078488|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343350|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497642|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343349|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497641|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK051310|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF260133|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030287|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030288|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030289|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF257475|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK147196|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC050822|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081462|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081463|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081464|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081466|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081467|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081468|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081469|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081470|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_020331|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1
mm9_v1_chr15_-_71558142_71558267	0.0961904	bHLH_family.p2	BC125645|Fam135b|70363|family with sequence similarity 135, member B	BC125647|Fam135b|70363|family with sequence similarity 135, member B	AK043571|Fam135b|70363|family with sequence similarity 135, member B	NM_177819|Fam135b|70363|family with sequence similarity 135, member B
mm9_v1_chr2_-_93302538_93302610	0.0959323	bHLH_family.p2	D14883|Cd82|12521|CD82 antigen	AK160907|Cd82|12521|CD82 antigen	AK158033|Cd82|12521|CD82 antigen	AK168097|Cd82|12521|CD82 antigen
mm9_v1_chr15_-_97738692_97738754	0.0958295	bHLH_family.p2	BC006716|Vdr|22337|vitamin D receptor	D31969|Vdr|22337|vitamin D receptor	AK154647|Vdr|22337|vitamin D receptor	AK030339|Vdr|22337|vitamin D receptor	NM_009504|Vdr|22337|vitamin D receptor	AK156789|Vdr|22337|vitamin D receptor
mm9_v1_chr10_-_12912880_12912990	0.0956889	bHLH_family.p2	AK011491|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC069962|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC067062|Ltv1|353258|LTV1 homolog (S. cerevisiae)	NM_181470|Ltv1|353258|LTV1 homolog (S. cerevisiae)
mm9_v1_chr12_+_60232459_60232573	0.0955801	bHLH_family.p2	AK208297|Ctage5|217615|CTAGE family, member 5
mm9_v1_chr7_-_20158687_20158791	0.0955614	bHLH_family.p2	BC028527|Gemin7|69731|gem (nuclear organelle) associated protein 7	AK010303|Gemin7|69731|gem (nuclear organelle) associated protein 7	NM_027189|Gemin7|69731|gem (nuclear organelle) associated protein 7
mm9_v1_chr1_-_186669499_186669729	0.0954183	bHLH_family.p2	AK178160|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK180823|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	BC006888|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	BC042686|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK002874|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK051230|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK078650|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	NM_133684|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK017150|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2
mm9_v1_chr11_+_11362087_11362098	0.0952344	bHLH_family.p2	
mm9_v1_chr10_-_114688440_114688479	0.0947703	bHLH_family.p2	BC032087|Tbc1d15|66687|TBC1 domain family, member 15	AK010704|Tbc1d15|66687|TBC1 domain family, member 15	DQ054831|Tbc1d15|66687|TBC1 domain family, member 15
mm9_v1_chr4_-_133556751_133556816	0.0944148	bHLH_family.p2	AK149138|Dhdds|67422|dehydrodolichyl diphosphate synthase	BC004011|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK049991|Dhdds|67422|dehydrodolichyl diphosphate synthase	NM_026144|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK004993|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK014317|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK034277|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK135087|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK017556|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK171207|Dhdds|67422|dehydrodolichyl diphosphate synthase	AK036929|Dhdds|67422|dehydrodolichyl diphosphate synthase
mm9_v1_chr6_+_88034684_88034764	0.0939768	bHLH_family.p2	
mm9_v1_chr11_-_117734712_117734839	0.093969	bHLH_family.p2	AY219872|Tha1|71776|threonine aldolase 1	BC055825|Tha1|71776|threonine aldolase 1	AK005036|Tha1|71776|threonine aldolase 1	AY219871|Tha1|71776|threonine aldolase 1	NM_027919|Tha1|71776|threonine aldolase 1
mm9_v1_chr4_+_114732112_114732131	0.0938899	bHLH_family.p2	AK144164|Tal1|21349|T-cell acute lymphocytic leukemia 1	M59764|Tal1|21349|T-cell acute lymphocytic leukemia 1	NM_011527|Tal1|21349|T-cell acute lymphocytic leukemia 1
mm9_v1_chr8_-_126506732_126506777	0.0938512	bHLH_family.p2	AK081782|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10	AK011569|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10	AF266284|Abcb10|56199|ATP-binding cassette, sub-family B (MDR/TAP), member 10
mm9_v1_chr11_+_114713196_114713368	0.0932702	bHLH_family.p2	NM_147217|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C	BC031439|Gprc5c|70355|G protein-coupled receptor, family C, group 5, member C
mm9_v1_chr17_-_47824991_47825049	0.0931961	bHLH_family.p2	AK003291|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	AK019199|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	BC037589|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)	AK010470|Tomm6|66119|translocase of outer mitochondrial membrane 6 homolog (yeast)
mm9_v1_chr14_-_55545586_55545624	0.0931252	bHLH_family.p2	NM_010112|Efs|13644|embryonal Fyn-associated substrate
mm9_v1_chr11_+_109334649_109334687	0.0929573	bHLH_family.p2	AK158726|Arsg|74008|arylsulfatase G	NM_028710|Arsg|74008|arylsulfatase G
mm9_v1_chr17_-_71202829_71202871	0.0927148	bHLH_family.p2	AK160193|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164074|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr14_-_55531726_55531986	0.0926738	bHLH_family.p2	BC062878|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AB012808|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK007059|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	BC005727|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK163116|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	NM_021551|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr18_-_80397324_80397437	0.0926422	bHLH_family.p2	BC064066|Rbfa|68731|ribosome binding factor A	NM_199197|Rbfa|68731|ribosome binding factor A	AK004019|Rbfa|68731|ribosome binding factor A	AK145807|Rbfa|68731|ribosome binding factor A
mm9_v1_chr14_+_22650727_22650812	0.092462	bHLH_family.p2	AK150504|Vdac2|22334|voltage-dependent anion channel 2	AK150627|Vdac2|22334|voltage-dependent anion channel 2	AK150940|Vdac2|22334|voltage-dependent anion channel 2	AK078555|Vdac2|22334|voltage-dependent anion channel 2	BC003731|Vdac2|22334|voltage-dependent anion channel 2	NM_011695|Vdac2|22334|voltage-dependent anion channel 2	U30838|Vdac2|22334|voltage-dependent anion channel 2	AK012359|Vdac2|22334|voltage-dependent anion channel 2	AK152274|Vdac2|22334|voltage-dependent anion channel 2	AK168328|Vdac2|22334|voltage-dependent anion channel 2	AK168199|Vdac2|22334|voltage-dependent anion channel 2
mm9_v1_chr13_+_32893989_32894122	0.0923625	bHLH_family.p2	AB056151|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr11_-_100831819_100831899	0.0917735	bHLH_family.p2	AK154132|Ptrf|19285|polymerase I and transcript release factor	BC116701|Ptrf|19285|polymerase I and transcript release factor	BC117527|Ptrf|19285|polymerase I and transcript release factor	AF036249|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr4_-_120642197_120642226	0.0913904	bHLH_family.p2	AB029329|Smap2|69780|stromal membrane-associated GTPase-activating protein 2
mm9_v1_chr2_+_172847371_172847458	0.0912694	bHLH_family.p2	AK166609|Rbm38|56190|RNA binding motif protein 38	NM_019547|Rbm38|56190|RNA binding motif protein 38	BC006687|Rbm38|56190|RNA binding motif protein 38	AK162141|Rbm38|56190|RNA binding motif protein 38	AK146026|Rbm38|56190|RNA binding motif protein 38	AK172625|Rbm38|56190|RNA binding motif protein 38	BC085307|Rbm38|56190|RNA binding motif protein 38
mm9_v1_chr5_+_109098283_109098358	0.0909812	bHLH_family.p2	AK169998|Idua|15932|iduronidase, alpha-L-	AK031414|Idua|15932|iduronidase, alpha-L-	AK045330|Idua|15932|iduronidase, alpha-L-	BC057935|Idua|15932|iduronidase, alpha-L-
mm9_v1_chr8_-_24348082_24348154	0.0907773	bHLH_family.p2	BC002156|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	AK076104|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	NM_024240|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)
mm9_v1_chr3_-_107320831_107320842	0.0907194	bHLH_family.p2	AK083807|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr2_+_28555680_28555693	0.0906385	bHLH_family.p2	NM_001033874|Ak8|68870|adenylate kinase 8	AK004439|Ak8|68870|adenylate kinase 8	BC100481|Ak8|68870|adenylate kinase 8	BC109352|Ak8|68870|adenylate kinase 8
mm9_v1_chr17_-_35109068_35109102	0.0905396	bHLH_family.p2	BC054782|Hspa1a|193740|heat shock protein 1A	BC032044|Hspa1a|193740|heat shock protein 1A	AK132331|Hspa1a|193740|heat shock protein 1A	AK160912|Hspa1a|193740|heat shock protein 1A	AK171820|Hspa1a|193740|heat shock protein 1A	NM_010479|Hspa1a|193740|heat shock protein 1A
mm9_v1_chr13_+_55546808_55546869	0.0904035	bHLH_family.p2	AK146119|Grk6|26385|G protein-coupled receptor kinase 6	AF040747|Grk6|26385|G protein-coupled receptor kinase 6	AF040748|Grk6|26385|G protein-coupled receptor kinase 6	AF040749|Grk6|26385|G protein-coupled receptor kinase 6	BC075719|Grk6|26385|G protein-coupled receptor kinase 6	Y15798|Grk6|26385|G protein-coupled receptor kinase 6	Y15799|Grk6|26385|G protein-coupled receptor kinase 6	Y15797|Grk6|26385|G protein-coupled receptor kinase 6	Y15800|Grk6|26385|G protein-coupled receptor kinase 6
mm9_v1_chr13_+_34254902_34254947	0.0903517	bHLH_family.p2	AK009887|Psmg4|69666|proteasome (prosome, macropain) assembly chaperone 4
mm9_v1_chr5_+_115461102_115461223	0.0903183	bHLH_family.p2	BC086646|Sppl3|74585|signal peptide peptidase 3	AK014709|Sppl3|74585|signal peptide peptidase 3
mm9_v1_chr8_-_26127346_26127364	0.0901937	bHLH_family.p2	AK155582|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr11_+_102254816_102254873	0.0901934	bHLH_family.p2	BC046319|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr7_+_28964486_28964515	0.0900973	bHLH_family.p2	BC019545|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_001037957|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_010092|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	Y18280|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm9_v1_chr18_+_65857921_65857924	0.0899878	bHLH_family.p2	AK030604|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene	NM_177028|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene	AK030615|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene	BC141265|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene
mm9_v1_chr8_-_107779027_107779052	0.0897857	bHLH_family.p2	AK169360|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene	NM_178879|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene	AK032108|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene
mm9_v1_chr4_+_151413427_151413471	0.0897406	bHLH_family.p2	AK047599|Nol9|74035|nucleolar protein 9	AK164493|Nol9|74035|nucleolar protein 9	NM_001159599|Nol9|74035|nucleolar protein 9	NM_028727|Nol9|74035|nucleolar protein 9	BC024877|Nol9|74035|nucleolar protein 9	AK172043|Nol9|74035|nucleolar protein 9	AK014568|Nol9|74035|nucleolar protein 9	AK050948|Nol9|74035|nucleolar protein 9	AK157956|Nol9|74035|nucleolar protein 9	BC125432|Nol9|74035|nucleolar protein 9	BC132099|Nol9|74035|nucleolar protein 9	AK157398|Nol9|74035|nucleolar protein 9	AK079935|Nol9|74035|nucleolar protein 9	AK046761|Nol9|74035|nucleolar protein 9	BC096599|Nol9|74035|nucleolar protein 9	AK042581|Nol9|74035|nucleolar protein 9	BC051109|Nol9|74035|nucleolar protein 9
mm9_v1_chr13_+_73741384_73741748	0.0895737	bHLH_family.p2	AK032295|Clptm1l|218335|CLPTM1-like	AK048357|Clptm1l|218335|CLPTM1-like	AK156203|Clptm1l|218335|CLPTM1-like	AK165939|Clptm1l|218335|CLPTM1-like	BC026562|Clptm1l|218335|CLPTM1-like	NM_146047|Clptm1l|218335|CLPTM1-like
mm9_v1_chr5_+_125956256_125956274	0.0895431	bHLH_family.p2	BC026817|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr19_-_27504303_27504360	0.0894894	bHLH_family.p2	AK088081|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	AK141893|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	BC145533|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	NM_177474|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	AK050829|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed	BC016186|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed
mm9_v1_chr10_+_59740373_59740429	0.0894413	bHLH_family.p2	NM_001146120|Psap|19156|prosaposin	NM_001146121|Psap|19156|prosaposin	NM_001146122|Psap|19156|prosaposin	NM_001146123|Psap|19156|prosaposin	NM_011179|Psap|19156|prosaposin	AK167902|Psap|19156|prosaposin	AK151686|Psap|19156|prosaposin	AK152203|Psap|19156|prosaposin
mm9_v1_chr2_+_164388211_164388224	0.0893951	bHLH_family.p2	AK005519|Wfdc2|67701|WAP four-disulfide core domain 2	NM_026323|Wfdc2|67701|WAP four-disulfide core domain 2	AF334269|Wfdc2|67701|WAP four-disulfide core domain 2	BC099427|Wfdc2|67701|WAP four-disulfide core domain 2
mm9_v1_chr5_-_137974398_137974535	0.0893045	bHLH_family.p2	BC062178|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK002604|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK151628|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	NM_010312|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	Y11970|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK146941|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2
mm9_v1_chr12_+_113960530_113960572	0.0890155	bHLH_family.p2	BC050077|AW555464|217882|expressed sequence AW555464
mm9_v1_chr4_-_149072713_149072721	0.0887667	bHLH_family.p2	AK149935|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK150649|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK151482|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK152661|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr9_+_108472210_108472254	0.0885473	bHLH_family.p2	AK149963|Dalrd3|67789|DALR anticodon binding domain containing 3	NM_026378|Dalrd3|67789|DALR anticodon binding domain containing 3	AK002439|Dalrd3|67789|DALR anticodon binding domain containing 3	AK171818|Dalrd3|67789|DALR anticodon binding domain containing 3	AK169405|Dalrd3|67789|DALR anticodon binding domain containing 3	BC013483|Dalrd3|67789|DALR anticodon binding domain containing 3
mm9_v1_chr6_-_119338677_119338775	0.0884898	bHLH_family.p2	AK148295|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr19_-_4989865_4989972	0.0884668	bHLH_family.p2	AB049835|Npas4|225872|neuronal PAS domain protein 4	BC129861|Npas4|225872|neuronal PAS domain protein 4	AK032607|Npas4|225872|neuronal PAS domain protein 4	NM_153553|Npas4|225872|neuronal PAS domain protein 4
mm9_v1_chr5_-_46247789_46247790	0.0883795	bHLH_family.p2	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr18_-_35113995_35113999	0.0881246	bHLH_family.p2	AK030299|Hspa9|15526|heat shock protein 9	AK145965|Hspa9|15526|heat shock protein 9	AK167856|Hspa9|15526|heat shock protein 9
mm9_v1_chr6_-_52141697_52141712	0.0880129	bHLH_family.p2	AK076098|Hoxa4|15401|homeobox A4	BC107172|Hoxa4|15401|homeobox A4	NM_008265|Hoxa4|15401|homeobox A4
mm9_v1_chr17_+_45704145_45704512	0.0880123	bHLH_family.p2	AK211181|Slc35b2|73836|solute carrier family 35, member B2	AK212100|Slc35b2|73836|solute carrier family 35, member B2	AK207266|Slc35b2|73836|solute carrier family 35, member B2	AK212091|Slc35b2|73836|solute carrier family 35, member B2	AK214463|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chrX_-_132706705_132706789	0.0879819	bHLH_family.p2	AK137039|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK012030|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK027927|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK083347|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK156414|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK014459|Tceal8|66684|transcription elongation factor A (SII)-like 8	BC027269|Tceal8|66684|transcription elongation factor A (SII)-like 8	AK076203|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_001168578|Tceal8|66684|transcription elongation factor A (SII)-like 8	NM_025703|Tceal8|66684|transcription elongation factor A (SII)-like 8
mm9_v1_chr5_-_110715027_110715078	0.0875178	bHLH_family.p2	BC057975|Pxmp2|19301|peroxisomal membrane protein 2	AF309644|Pxmp2|19301|peroxisomal membrane protein 2	AK003118|Pxmp2|19301|peroxisomal membrane protein 2
mm9_v1_chr11_-_6428731_6428778	0.0871156	bHLH_family.p2	AK160548|Gm11974|100041286|predicted gene 11974
mm9_v1_chr14_-_122196838_122196921	0.0870102	bHLH_family.p2	BC158127|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr3_-_94386590_94386623	0.0869411	bHLH_family.p2	AK147452|Snx27|76742|sorting nexin family member 27	NM_001082484|Snx27|76742|sorting nexin family member 27	NM_029721|Snx27|76742|sorting nexin family member 27
mm9_v1_chrX_+_71032347_71032381	0.0867692	bHLH_family.p2	NM_001166480|Ssr4|20832|signal sequence receptor, delta
mm9_v1_chr2_-_65076471_65076554	0.0867362	bHLH_family.p2	AK173076|Cobll1|319876|Cobl-like 1
mm9_v1_chr12_+_81793587_81793638	0.0865166	bHLH_family.p2	NM_001177503|3830431G21Rik|217682|RIKEN cDNA 3830431G21 gene	AK028383|3830431G21Rik|217682|RIKEN cDNA 3830431G21 gene
mm9_v1_chr11_+_92960603_92960762	0.0864739	bHLH_family.p2	AK036003|Car10|72605|carbonic anhydrase 10	NM_028296|Car10|72605|carbonic anhydrase 10	AK132222|Car10|72605|carbonic anhydrase 10
mm9_v1_chr11_-_90250949_90250992	0.0863228	bHLH_family.p2	AK079308|Hlf|217082|hepatic leukemia factor	AK079068|Hlf|217082|hepatic leukemia factor
mm9_v1_chr16_+_93683426_93683502	0.0862808	bHLH_family.p2	AK003232|Cbr3|109857|carbonyl reductase 3	BC028763|Cbr3|109857|carbonyl reductase 3	NM_173047|Cbr3|109857|carbonyl reductase 3	AK028150|Cbr3|109857|carbonyl reductase 3	BC096658|Cbr3|109857|carbonyl reductase 3	BC087735|Cbr3|109857|carbonyl reductase 3
mm9_v1_chr6_-_90760116_90760132	0.0862799	bHLH_family.p2	NM_001134384|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr7_+_64845887_64845914	0.0862044	bHLH_family.p2	AK083107|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_001038701|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr8_+_123059756_123059756	0.0861289	bHLH_family.p2	AK033263|Gse1|382034|genetic suppressor element 1	NM_001145897|Gse1|382034|genetic suppressor element 1
mm9_v1_chr9_-_57006034_57006159	0.0859472	bHLH_family.p2	BC055798|Commd4|66199|COMM domain containing 4	AK172194|Commd4|66199|COMM domain containing 4	BC033438|Commd4|66199|COMM domain containing 4	BC037364|Commd4|66199|COMM domain containing 4	AK009802|Commd4|66199|COMM domain containing 4	BC049222|Commd4|66199|COMM domain containing 4	AK004174|Commd4|66199|COMM domain containing 4	NM_025417|Commd4|66199|COMM domain containing 4
mm9_v1_chrX_+_102275071_102275146	0.0858506	bHLH_family.p2	AK007655|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK030507|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK076889|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	NM_026312|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC035042|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK011610|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC061070|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC044719|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene
mm9_v1_chr17_-_47970167_47970209	0.0857968	bHLH_family.p2	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr4_+_45310018_45310039	0.0857311	bHLH_family.p2	AK011746|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	AK030465|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	NM_027266|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3
mm9_v1_chr6_-_70741991_70742200	0.0855305	bHLH_family.p2	BC053526|Rpia|19895|ribose 5-phosphate isomerase A	AK137235|Rpia|19895|ribose 5-phosphate isomerase A	L35034|Rpia|19895|ribose 5-phosphate isomerase A	NM_009075|Rpia|19895|ribose 5-phosphate isomerase A
mm9_v1_chr1_-_88567078_88567149	0.0852843	bHLH_family.p2	BC111834|Nppc|18159|natriuretic peptide type C	AK036176|Nppc|18159|natriuretic peptide type C	NM_010933|Nppc|18159|natriuretic peptide type C	AK020093|Nppc|18159|natriuretic peptide type C
mm9_v1_chr10_+_69388242_69388279	0.0851735	bHLH_family.p2	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr2_+_164793487_164793487	0.0847952	bHLH_family.p2	AK147262|Slc12a5|57138|solute carrier family 12, member 5	NM_020333|Slc12a5|57138|solute carrier family 12, member 5
mm9_v1_chr4_+_155215979_155216047	0.0847824	bHLH_family.p2	AK182996|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr17_-_24357560_24357795	0.0847639	bHLH_family.p2	BC063767|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	AK146539|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	BC072612|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	NM_028056|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene	AK005395|1600002H07Rik|72016|RIKEN cDNA 1600002H07 gene
mm9_v1_chr8_+_73222913_73223172	0.0847282	bHLH_family.p2	X15358|Jund|16478|Jun proto-oncogene related gene d
mm9_v1_chr1_-_82287990_82288082	0.0846242	bHLH_family.p2	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr10_+_82323313_82323353	0.0842327	bHLH_family.p2	BC020274|Txnrd1|50493|thioredoxin reductase 1	AK177272|Txnrd1|50493|thioredoxin reductase 1	AK180432|Txnrd1|50493|thioredoxin reductase 1	AK184063|Txnrd1|50493|thioredoxin reductase 1	AK185936|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr9_+_59504417_59504440	0.0841361	bHLH_family.p2	BC094663|Pkm2|18746|pyruvate kinase, muscle	D38379|Pkm2|18746|pyruvate kinase, muscle
mm9_v1_chr5_-_72950837_72950946	0.0840482	bHLH_family.p2	AK162215|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	AK164247|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	AK132320|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	NM_133921|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	AK145289|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1
mm9_v1_chr18_-_36838916_36838928	0.0840406	bHLH_family.p2	AK141878|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr4_-_107704544_107704694	0.0836043	bHLH_family.p2	BC052487|Podn|242608|podocan	AK034987|Podn|242608|podocan	AK161018|Podn|242608|podocan	AY313606|Podn|242608|podocan	NM_172874|Podn|242608|podocan
mm9_v1_chr15_-_89209682_89209731	0.0833685	bHLH_family.p2	BC087962|Odf3b|70113|outer dense fiber of sperm tails 3B	NM_001013022|Odf3b|70113|outer dense fiber of sperm tails 3B
mm9_v1_chr9_+_118515769_118515921	0.0827934	bHLH_family.p2	AJ344342|Itga9|104099|integrin alpha 9	NM_133721|Itga9|104099|integrin alpha 9	BC150824|Itga9|104099|integrin alpha 9
mm9_v1_chr8_-_69010394_69010447	0.0826554	bHLH_family.p2	BC016246|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	BC034844|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK007637|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	NM_025465|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK009167|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK011532|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK051835|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene	AK031875|1810029B16Rik|66282|RIKEN cDNA 1810029B16 gene
mm9_v1_chr17_-_51318632_51318637	0.0825816	bHLH_family.p2	AK154975|Tbc1d5|72238|TBC1 domain family, member 5
mm9_v1_chr10_-_77875707_77875787	0.0824517	bHLH_family.p2	BC065994|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	AK077540|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	BC022910|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	U79773|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	U79774|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	BC065993|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	NM_010925|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)
mm9_v1_chr15_-_102076706_102076930	0.0822224	bHLH_family.p2	M34475|Rarg|19411|retinoic acid receptor, gamma	AK155911|Rarg|19411|retinoic acid receptor, gamma	NM_001042727|Rarg|19411|retinoic acid receptor, gamma	M32069|Rarg|19411|retinoic acid receptor, gamma
mm9_v1_chr15_+_8918001_8918118	0.0820861	bHLH_family.p2	AK048152|Ranbp3l|223332|RAN binding protein 3-like	AK132406|Ranbp3l|223332|RAN binding protein 3-like	BC058706|Ranbp3l|223332|RAN binding protein 3-like	NM_198024|Ranbp3l|223332|RAN binding protein 3-like
mm9_v1_chr12_+_54349663_54349663	0.0820565	bHLH_family.p2	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr17_+_21520684_21520739	0.0818202	bHLH_family.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr7_+_133991066_133991211	0.0817306	bHLH_family.p2	BC055768|Doc2a|13446|double C2, alpha	NM_010069|Doc2a|13446|double C2, alpha
mm9_v1_chr4_+_128735446_128735514	0.0817129	bHLH_family.p2	NM_029219|Rnf19b|75234|ring finger protein 19B
mm9_v1_chr6_+_124662272_124662375	0.0815879	bHLH_family.p2	AK158423|Phb2|12034|prohibitin 2	NM_007531|Phb2|12034|prohibitin 2	AK151952|Phb2|12034|prohibitin 2	AK152375|Phb2|12034|prohibitin 2	AK153368|Phb2|12034|prohibitin 2	AK132058|Phb2|12034|prohibitin 2	AK002334|Phb2|12034|prohibitin 2	AK011107|Phb2|12034|prohibitin 2	AK132052|Phb2|12034|prohibitin 2	AY211613|Phb2|12034|prohibitin 2	X78683|Phb2|12034|prohibitin 2	AK090088|Phb2|12034|prohibitin 2	BC145875|Phb2|12034|prohibitin 2
mm9_v1_chr2_+_75542804_75542924	0.0812672	bHLH_family.p2	AK053216|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene	AK078602|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene
mm9_v1_chr11_+_96668506_96668525	0.0810645	bHLH_family.p2	AK080243|Cbx1|12412|chromobox homolog 1 (Drosophila HP1 beta)	AK088236|Cbx1|12412|chromobox homolog 1 (Drosophila HP1 beta)
mm9_v1_chr8_-_73121418_73121547	0.0810475	bHLH_family.p2	
mm9_v1_chr3_-_108525202_108525224	0.0808956	bHLH_family.p2	AK143552|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)	NM_029522|Gpsm2|76123|G-protein signalling modulator 2 (AGS3-like, C. elegans)
mm9_v1_chr11_-_33413715_33413767	0.0807776	bHLH_family.p2	NM_023146|Ranbp17|66011|RAN binding protein 17
mm9_v1_chrX_-_20539095_20539142	0.0806243	bHLH_family.p2	AK027917|Uxt|22294|ubiquitously expressed transcript	NM_013840|Uxt|22294|ubiquitously expressed transcript	AK086822|Uxt|22294|ubiquitously expressed transcript	AK163983|Uxt|22294|ubiquitously expressed transcript
mm9_v1_chr11_+_72261092_72261109	0.080465	bHLH_family.p2	AK204284|Mybbp1a|18432|MYB binding protein (P160) 1a	AK219784|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr6_-_95668770_95668830	0.0804098	bHLH_family.p2	BC080781|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK045176|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK042987|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK156263|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK167136|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172363|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172561|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172633|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	NM_011507|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit
mm9_v1_chr18_-_78006491_78006518	0.0803009	bHLH_family.p2	AK076912|Haus1|225745|HAUS augmin-like complex, subunit 1	AK146923|Haus1|225745|HAUS augmin-like complex, subunit 1	BC024400|Haus1|225745|HAUS augmin-like complex, subunit 1	NM_146089|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr11_-_77421308_77421363	0.080252	bHLH_family.p2	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr12_+_103521355_103521400	0.0800936	bHLH_family.p2	BC137907|Rin3|217835|Ras and Rab interactor 3	AK133988|Rin3|217835|Ras and Rab interactor 3	AK167187|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chrX_+_136014905_136015005	0.0799757	bHLH_family.p2	AK171459|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	NM_175326|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK155588|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK052376|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC112416|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC113128|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene
mm9_v1_chr3_+_94778652_94778663	0.079968	bHLH_family.p2	BC079846|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	NM_175356|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	AK053614|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	AK172074|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm9_v1_chr13_+_22036962_22036998	0.0798963	bHLH_family.p2	BC053084|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	NM_183014|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	AK036164|Zfp184|193452|zinc finger protein 184 (Kruppel-like)
mm9_v1_chr6_-_52590325_52590367	0.0797207	bHLH_family.p2	AB051067|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase
mm9_v1_chr4_-_147412872_147412910	0.0796235	bHLH_family.p2	NM_011929|Clcn6|26372|chloride channel 6
mm9_v1_chr5_-_23218477_23218493	0.0796033	bHLH_family.p2	AK089743|AI506816|433855|expressed sequence AI506816	AK157274|AI506816|433855|expressed sequence AI506816	AK161191|AI506816|433855|expressed sequence AI506816	AK088877|AI506816|433855|expressed sequence AI506816	AK151523|AI506816|433855|expressed sequence AI506816
mm9_v1_chr15_-_75921924_75921982	0.0795896	bHLH_family.p2	BC068117|Nrbp2|223649|nuclear receptor binding protein 2
mm9_v1_chr11_-_20641455_20641486	0.079456	bHLH_family.p2	AK029681|Aftph|216549|aftiphilin	AK138793|Aftph|216549|aftiphilin	BC052036|Aftph|216549|aftiphilin	NM_181411|Aftph|216549|aftiphilin
mm9_v1_chr6_-_134742342_134742495	0.0791432	bHLH_family.p2	AB052157|Dusp16|70686|dual specificity phosphatase 16	BC059232|Dusp16|70686|dual specificity phosphatase 16	AF345951|Dusp16|70686|dual specificity phosphatase 16	AF345952|Dusp16|70686|dual specificity phosphatase 16	AF345953|Dusp16|70686|dual specificity phosphatase 16	AF345954|Dusp16|70686|dual specificity phosphatase 16	BC057321|Dusp16|70686|dual specificity phosphatase 16
mm9_v1_chr3_+_90035515_90035692	0.0791309	bHLH_family.p2	AK146337|Jtb|23922|jumping translocation breakpoint	NM_206924|Jtb|23922|jumping translocation breakpoint	BC008139|Jtb|23922|jumping translocation breakpoint	AB016490|Jtb|23922|jumping translocation breakpoint	AK004469|Jtb|23922|jumping translocation breakpoint	AK089048|Jtb|23922|jumping translocation breakpoint
mm9_v1_chr6_+_136756729_136756803	0.0790902	bHLH_family.p2	NM_177688|H2afj|232440|H2A histone family, member J	BC099606|H2afj|232440|H2A histone family, member J
mm9_v1_chr6_+_113102884_113103027	0.0790267	bHLH_family.p2	AK088328|Setd5|72895|SET domain containing 5
mm9_v1_chr19_+_34266716_34266793	0.0789756	bHLH_family.p2	AK020229|Stambpl1|76630|STAM binding protein like 1	AB066211|Stambpl1|76630|STAM binding protein like 1	NM_029682|Stambpl1|76630|STAM binding protein like 1	BC023097|Stambpl1|76630|STAM binding protein like 1
mm9_v1_chr9_-_96264765_96264786	0.0788125	bHLH_family.p2	AK148495|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr7_-_112717810_112717827	0.0786678	bHLH_family.p2	AK075730|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr2_-_25978296_25978309	0.0785378	bHLH_family.p2	BC022103|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	AK002651|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr18_-_72367655_72367683	0.0785178	bHLH_family.p2	
mm9_v1_chr7_-_56136405_56136410	0.0783157	bHLH_family.p2	AK084513|E2f8|108961|E2F transcription factor 8	NM_001013368|E2f8|108961|E2F transcription factor 8
mm9_v1_chr1_-_75503026_75503062	0.0782861	bHLH_family.p2	AK031074|Obsl1|98733|obscurin-like 1	NM_178884|Obsl1|98733|obscurin-like 1
mm9_v1_chr12_+_113858217_113858317	0.0780265	bHLH_family.p2	AK146907|Adssl1|11565|adenylosuccinate synthetase like 1	NM_007421|Adssl1|11565|adenylosuccinate synthetase like 1	AK089520|Adssl1|11565|adenylosuccinate synthetase like 1	AK149634|Adssl1|11565|adenylosuccinate synthetase like 1	AK150874|Adssl1|11565|adenylosuccinate synthetase like 1	M74495|Adssl1|11565|adenylosuccinate synthetase like 1	BC039943|Adssl1|11565|adenylosuccinate synthetase like 1
mm9_v1_chr12_+_88607836_88607853	0.0779708	bHLH_family.p2	AK201587|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)
mm9_v1_chr4_+_95633972_95633995	0.0779331	bHLH_family.p2	AF487912|Hook1|77963|hook homolog 1 (Drosophila)
mm9_v1_chr2_-_35835311_35835317	0.0778791	bHLH_family.p2	AK016881|Ttll11|74410|tubulin tyrosine ligase-like family, member 11
mm9_v1_chr2_-_148701203_148701269	0.0778373	bHLH_family.p2	AK002438|Cst3|13010|cystatin C	NM_009976|Cst3|13010|cystatin C	AK014368|Cst3|13010|cystatin C	AK131728|Cst3|13010|cystatin C	AK146333|Cst3|13010|cystatin C
mm9_v1_chr5_+_17080553_17080681	0.0777752	bHLH_family.p2	AK034239|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	AK078589|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	BC066852|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	NM_013657|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	X85994|Sema3c|20348|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
mm9_v1_chr1_-_57463278_57463380	0.0776141	bHLH_family.p2	BC099495|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC058590|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC132289|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC144765|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC144766|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	AK139666|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene
mm9_v1_chr16_-_11134587_11134761	0.0773958	bHLH_family.p2	AK157288|Txndc11|106200|thioredoxin domain containing 11	BC029643|Txndc11|106200|thioredoxin domain containing 11	NM_029582|Txndc11|106200|thioredoxin domain containing 11	AK156154|Txndc11|106200|thioredoxin domain containing 11	AK170352|Txndc11|106200|thioredoxin domain containing 11	AK013044|Txndc11|106200|thioredoxin domain containing 11	AK155844|Txndc11|106200|thioredoxin domain containing 11	AK159484|Txndc11|106200|thioredoxin domain containing 11	BC020363|Txndc11|106200|thioredoxin domain containing 11	AK139620|Txndc11|106200|thioredoxin domain containing 11	AK157948|Txndc11|106200|thioredoxin domain containing 11	AK156590|Txndc11|106200|thioredoxin domain containing 11	AK029166|Txndc11|106200|thioredoxin domain containing 11
mm9_v1_chr7_-_81699435_81699678	0.0772929	bHLH_family.p2	AK166266|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	BC094464|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK037938|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	BC025059|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK152488|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AF226324|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK151781|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK031280|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	NM_001038643|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	NM_023908|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1
mm9_v1_chr6_+_125081890_125081965	0.0772542	bHLH_family.p2	NM_138747|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	AK079914|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	AK154006|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	AK156568|Nop2|110109|NOP2 nucleolar protein homolog (yeast)	BC007151|Nop2|110109|NOP2 nucleolar protein homolog (yeast)
mm9_v1_chr4_-_88367207_88367304	0.0771406	bHLH_family.p2	
mm9_v1_chr11_-_95171521_95171560	0.077058	bHLH_family.p2	AK078483|Myst2|217127|MYST histone acetyltransferase 2	AK166915|Myst2|217127|MYST histone acetyltransferase 2	NM_001195003|Myst2|217127|MYST histone acetyltransferase 2	NM_001195004|Myst2|217127|MYST histone acetyltransferase 2	NM_177619|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr11_-_94103862_94104034	0.0759579	bHLH_family.p2	AY308804|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	BC113144|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	NM_181819|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	AY100450|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm9_v1_chr11_+_94072732_94072796	0.0758396	bHLH_family.p2	AK142667|Tob1|22057|transducer of ErbB-2.1	BC082588|Tob1|22057|transducer of ErbB-2.1	NM_009427|Tob1|22057|transducer of ErbB-2.1
mm9_v1_chr1_+_24685556_24685610	0.0757155	bHLH_family.p2	BC025579|Lmbrd1|68421|LMBR1 domain containing 1	BC031902|Lmbrd1|68421|LMBR1 domain containing 1	AK167080|Lmbrd1|68421|LMBR1 domain containing 1	AK152170|Lmbrd1|68421|LMBR1 domain containing 1	AK153237|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr7_+_98239230_98239295	0.0755627	bHLH_family.p2	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr15_-_53734033_53734098	0.0754873	bHLH_family.p2	AK032588|Samd12|320679|sterile alpha motif domain containing 12	AK080536|Samd12|320679|sterile alpha motif domain containing 12
mm9_v1_chr10_-_80363493_80363567	0.0753142	bHLH_family.p2	AK009041|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK013230|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK003054|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK009152|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK088984|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	BC011436|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr17_-_56323312_56323363	0.075313	bHLH_family.p2	AY038184|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008854|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK018016|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK133947|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008289|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK162834|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK004074|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK148083|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	NM_080837|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132127|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132129|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed
mm9_v1_chr10_-_128258639_128258702	0.0752948	bHLH_family.p2	AK002824|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK002583|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK013455|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	BC002146|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	NM_024180|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)
mm9_v1_chr9_+_50560862_50561082	0.0750973	bHLH_family.p2	NM_009964|Cryab|12955|crystallin, alpha B
mm9_v1_chrX_+_133276377_133276400	0.0750386	bHLH_family.p2	AK160692|BC065397|436230|cDNA sequence BC065397
mm9_v1_chr13_-_76081343_76081394	0.0748738	bHLH_family.p2	AK081381|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr10_-_128026556_128026720	0.0748603	bHLH_family.p2	AY686636|Erbb3|13867|v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)	NM_010153|Erbb3|13867|v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)	BC106091|Erbb3|13867|v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)
mm9_v1_chr7_-_133726668_133726903	0.0748539	bHLH_family.p2	U92811|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	U47106|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	BC060306|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	U68064|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	AK078976|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	NM_009907|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	BC080759|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	BC058753|Cln3|12752|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm9_v1_chr18_+_38409902_38409977	0.0746926	bHLH_family.p2	NM_024179|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK035876|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK002437|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK171837|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK079423|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	BC002117|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK141675|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene	AK172900|0610009O20Rik|66839|RIKEN cDNA 0610009O20 gene
mm9_v1_chr18_+_37968450_37968553	0.0745168	bHLH_family.p2	AK193109|Pcdhgc3|93706|protocadherin gamma subfamily C, 3
mm9_v1_chr7_-_25757430_25757522	0.0741192	bHLH_family.p2	AK046109|Rabac1|14470|Rab acceptor 1 (prenylated)
mm9_v1_chr11_-_116060026_116060114	0.0739653	bHLH_family.p2	BC054727|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK051539|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AB034914|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK040566|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK128941|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AF006688|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl
mm9_v1_chr13_-_93564652_93564772	0.0739484	bHLH_family.p2	BC139414|Thbs4|21828|thrombospondin 4	AF102887|Thbs4|21828|thrombospondin 4	NM_011582|Thbs4|21828|thrombospondin 4
mm9_v1_chr7_+_134944106_134944154	0.0737258	bHLH_family.p2	NM_001040684|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	NM_133943|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AK077476|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chrX_-_101396512_101396524	0.0737108	bHLH_family.p2	AK054513|C77370|245555|expressed sequence C77370
mm9_v1_chr16_-_78576898_78576912	0.0735167	bHLH_family.p2	AK009258|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	NM_025967|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr15_-_60656465_60656634	0.0735015	bHLH_family.p2	AK139928|Fam84b|399603|family with sequence similarity 84, member B	NM_001162926|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr8_-_88079169_88079179	0.0729978	bHLH_family.p2	NM_019794|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr5_+_137943876_137943900	0.0725971	bHLH_family.p2	AK020298|9130604C24Rik|77707|RIKEN cDNA 9130604C24 gene
mm9_v1_chr14_-_32454146_32454155	0.072363	bHLH_family.p2	AK041686|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AJ132139|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	AK050078|Hacl1|56794|2-hydroxyacyl-CoA lyase 1	NM_019975|Hacl1|56794|2-hydroxyacyl-CoA lyase 1
mm9_v1_chr19_+_9026569_9026592	0.0721945	bHLH_family.p2	
mm9_v1_chrX_+_63906333_63906333	0.0721675	bHLH_family.p2	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr5_+_140267449_140267530	0.0720598	bHLH_family.p2	AK143654|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	AK143717|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	NM_010757|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	D42124|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	AK153856|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	BC014295|Mafk|17135|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
mm9_v1_chr19_-_6067723_6067866	0.0718636	bHLH_family.p2	AF480070|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK039028|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK155475|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK014166|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK134512|Tm7sf2|73166|transmembrane 7 superfamily member 2	BC014769|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK037325|Tm7sf2|73166|transmembrane 7 superfamily member 2	NM_028454|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK040016|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK043687|Tm7sf2|73166|transmembrane 7 superfamily member 2
mm9_v1_chr3_-_55987612_55987634	0.0717018	bHLH_family.p2	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr11_-_101645629_101645660	0.0715803	bHLH_family.p2	AK144683|Etv4|18612|ets variant gene 4 (E1A enhancer binding protein, E1AF)
mm9_v1_chr11_-_53293580_53293677	0.0714821	bHLH_family.p2	AK043538|Ankrd43|237761|ankyrin repeat domain 43
mm9_v1_chr6_+_97757012_97757093	0.0712729	bHLH_family.p2	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr11_-_116713389_116713469	0.0710979	bHLH_family.p2	AF250132|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr8_+_116963601_116963632	0.0710913	bHLH_family.p2	AK046903|Wwox|80707|WW domain-containing oxidoreductase	AK050541|Wwox|80707|WW domain-containing oxidoreductase	AK083096|Wwox|80707|WW domain-containing oxidoreductase	AK018507|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr1_-_167124442_167124588	0.0708253	bHLH_family.p2	BC017549|Sft2d2|108735|SFT2 domain containing 2	AK036578|Sft2d2|108735|SFT2 domain containing 2	AK170590|Sft2d2|108735|SFT2 domain containing 2	AK156973|Sft2d2|108735|SFT2 domain containing 2	AK075812|Sft2d2|108735|SFT2 domain containing 2	NM_145512|Sft2d2|108735|SFT2 domain containing 2
mm9_v1_chr8_+_127387116_127387142	0.070665	bHLH_family.p2	AJ132012|Gnpat|14712|glyceronephosphate O-acyltransferase	AK183472|Gnpat|14712|glyceronephosphate O-acyltransferase
mm9_v1_chr11_-_43649708_43649999	0.0704208	bHLH_family.p2	BC138653|Adra1b|11548|adrenergic receptor, alpha 1b	BC138654|Adra1b|11548|adrenergic receptor, alpha 1b	AK043877|Adra1b|11548|adrenergic receptor, alpha 1b	NM_007416|Adra1b|11548|adrenergic receptor, alpha 1b	AK139448|Adra1b|11548|adrenergic receptor, alpha 1b
mm9_v1_chr17_-_66121883_66122091	0.0702765	bHLH_family.p2	AB232617|Rab31|106572|RAB31, member RAS oncogene family	AK159095|Rab31|106572|RAB31, member RAS oncogene family	AK166151|Rab31|106572|RAB31, member RAS oncogene family	AK051270|Rab31|106572|RAB31, member RAS oncogene family	BC013063|Rab31|106572|RAB31, member RAS oncogene family	AK156677|Rab31|106572|RAB31, member RAS oncogene family	NM_133685|Rab31|106572|RAB31, member RAS oncogene family
mm9_v1_chr2_-_122194653_122194653	0.070235	bHLH_family.p2	NM_001013829|Shf|435684|Src homology 2 domain containing F
mm9_v1_chr2_+_29475402_29475429	0.0701802	bHLH_family.p2	BC129881|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chrX_-_160465891_160465950	0.0697965	bHLH_family.p2	BC034413|Car5b|56078|carbonic anhydrase 5b, mitochondrial	AK046691|Car5b|56078|carbonic anhydrase 5b, mitochondrial	AK085670|Car5b|56078|carbonic anhydrase 5b, mitochondrial	NM_181315|Car5b|56078|carbonic anhydrase 5b, mitochondrial
mm9_v1_chr6_-_57641998_57642109	0.069704	bHLH_family.p2	AK011515|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK029193|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK032381|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK003713|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK008978|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	NM_025574|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y
mm9_v1_chr10_+_79460226_79460359	0.0696855	bHLH_family.p2	BC145120|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7	BC150708|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7	AF287141|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7	NM_013850|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7
mm9_v1_chr13_-_58228079_58228222	0.0696144	bHLH_family.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr14_+_14845004_14845173	0.069535	bHLH_family.p2	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr1_-_141273617_141273676	0.0694665	bHLH_family.p2	AF406641|Crb1|170788|crumbs homolog 1 (Drosophila)	AY450552|Crb1|170788|crumbs homolog 1 (Drosophila)	NM_133239|Crb1|170788|crumbs homolog 1 (Drosophila)	AF492496|Crb1|170788|crumbs homolog 1 (Drosophila)
mm9_v1_chr10_-_8238194_8238362	0.0693425	bHLH_family.p2	AK162950|Ust|338362|uronyl-2-sulfotransferase	BC138155|Ust|338362|uronyl-2-sulfotransferase
mm9_v1_chr14_-_73109722_73109912	0.0691213	bHLH_family.p2	AK089380|Fndc3a|319448|fibronectin type III domain containing 3A	AK032733|Fndc3a|319448|fibronectin type III domain containing 3A	AK164398|Fndc3a|319448|fibronectin type III domain containing 3A	AK048586|Fndc3a|319448|fibronectin type III domain containing 3A	DQ192036|Fndc3a|319448|fibronectin type III domain containing 3A	NM_207636|Fndc3a|319448|fibronectin type III domain containing 3A
mm9_v1_chr7_-_112781902_112782053	0.0690918	bHLH_family.p2	BC003347|Trim3|55992|tripartite motif-containing 3	AF220019|Trim3|55992|tripartite motif-containing 3	AK144674|Trim3|55992|tripartite motif-containing 3	NM_018880|Trim3|55992|tripartite motif-containing 3	AK170029|Trim3|55992|tripartite motif-containing 3	BC034263|Trim3|55992|tripartite motif-containing 3	AK019165|Trim3|55992|tripartite motif-containing 3
mm9_v1_chr14_-_65059694_65059876	0.0690013	bHLH_family.p2	AK002356|Msra|110265|methionine sulfoxide reductase A	AK009822|Msra|110265|methionine sulfoxide reductase A	AK030278|Msra|110265|methionine sulfoxide reductase A	BC014738|Msra|110265|methionine sulfoxide reductase A	AK049714|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chr17_+_32673502_32673573	0.0687989	bHLH_family.p2	AK146232|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	AK078557|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	AK083886|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	BC026539|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	AF233646|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	NM_024442|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16
mm9_v1_chr7_-_86275845_86275903	0.0687657	bHLH_family.p2	AY269788|Hapln3|67666|hyaluronan and proteoglycan link protein 3	BC110474|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK017865|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK136956|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AK016123|Hapln3|67666|hyaluronan and proteoglycan link protein 3	AY262757|Hapln3|67666|hyaluronan and proteoglycan link protein 3	NM_178255|Hapln3|67666|hyaluronan and proteoglycan link protein 3
mm9_v1_chr7_-_29123775_29123801	0.0686151	bHLH_family.p2	AK146650|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr19_+_6306456_6306644	0.0685799	bHLH_family.p2	NM_001033342|Cdc42bpg|240505|CDC42 binding protein kinase gamma (DMPK-like)
mm9_v1_chr11_-_100711785_100712037	0.0685708	bHLH_family.p2	Z48539|Stat5b|20851|signal transducer and activator of transcription 5B	BC024319|Stat5b|20851|signal transducer and activator of transcription 5B	AK154664|Stat5b|20851|signal transducer and activator of transcription 5B	AK150098|Stat5b|20851|signal transducer and activator of transcription 5B	NM_001113563|Stat5b|20851|signal transducer and activator of transcription 5B	AK045531|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr1_-_182413489_182413558	0.0685431	bHLH_family.p2	BC120654|6330403A02Rik|381310|RIKEN cDNA 6330403A02 gene	BC120656|6330403A02Rik|381310|RIKEN cDNA 6330403A02 gene
mm9_v1_chr7_-_86531587_86531645	0.0682462	bHLH_family.p2	BC016268|Rlbp1|19771|retinaldehyde binding protein 1	AK014227|Rlbp1|19771|retinaldehyde binding protein 1
mm9_v1_chr16_+_87455222_87455307	0.0681919	bHLH_family.p2	NM_024258|Usp16|74112|ubiquitin specific peptidase 16	AK162683|Usp16|74112|ubiquitin specific peptidase 16	AK013437|Usp16|74112|ubiquitin specific peptidase 16	AK004594|Usp16|74112|ubiquitin specific peptidase 16	AK160038|Usp16|74112|ubiquitin specific peptidase 16	AK043931|Usp16|74112|ubiquitin specific peptidase 16	AK018212|Usp16|74112|ubiquitin specific peptidase 16	BC003278|Usp16|74112|ubiquitin specific peptidase 16
mm9_v1_chr14_+_56097594_56097633	0.0681151	bHLH_family.p2	NM_001037938|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	NM_030686|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC054361|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr8_+_116963542_116963590	0.068098	bHLH_family.p2	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr6_-_48395691_48395823	0.0680854	bHLH_family.p2	AB076746|Zfp467|68910|zinc finger protein 467	NM_001085417|Zfp467|68910|zinc finger protein 467	NM_020589|Zfp467|68910|zinc finger protein 467
mm9_v1_chr9_-_118059257_118059259	0.068032	bHLH_family.p2	AK168728|Cmc1|67899|COX assembly mitochondrial protein homolog (S. cerevisiae)
mm9_v1_chr18_+_14864659_14864697	0.067913	bHLH_family.p2	AK010717|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	NM_001163609|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116990|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC116992|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144771|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8	BC144772|Psma8|73677|proteasome (prosome, macropain) subunit, alpha type, 8
mm9_v1_chr11_-_3831515_3831585	0.0678458	bHLH_family.p2	AK197212|Tcn2|21452|transcobalamin 2	AF090686|Tcn2|21452|transcobalamin 2
mm9_v1_chr10_+_59764681_59764775	0.0678067	bHLH_family.p2	AK177739|Psap|19156|prosaposin	AK184913|Psap|19156|prosaposin	AK186657|Psap|19156|prosaposin	AK200316|Psap|19156|prosaposin	AK200829|Psap|19156|prosaposin	AK206879|Psap|19156|prosaposin	AK209964|Psap|19156|prosaposin	AK212335|Psap|19156|prosaposin	AK218028|Psap|19156|prosaposin	AK193227|Psap|19156|prosaposin	AK194685|Psap|19156|prosaposin
mm9_v1_chr2_-_152655725_152655826	0.0676747	bHLH_family.p2	U10100|Bcl2l1|12048|BCL2-like 1	U10101|Bcl2l1|12048|BCL2-like 1	X83574|Bcl2l1|12048|BCL2-like 1	BC089017|Bcl2l1|12048|BCL2-like 1	U51278|Bcl2l1|12048|BCL2-like 1
mm9_v1_chr11_+_102291759_102291826	0.0676536	bHLH_family.p2	AK018744|Grn|14824|granulin	AK013678|Grn|14824|granulin	AK147932|Grn|14824|granulin	AK149570|Grn|14824|granulin	AK150205|Grn|14824|granulin	AK150746|Grn|14824|granulin	AK150881|Grn|14824|granulin	AK151007|Grn|14824|granulin	AK151162|Grn|14824|granulin	AK151343|Grn|14824|granulin	AK151713|Grn|14824|granulin	AK152048|Grn|14824|granulin	AK152087|Grn|14824|granulin	AK152705|Grn|14824|granulin	AK152765|Grn|14824|granulin	AK153269|Grn|14824|granulin	AK153289|Grn|14824|granulin	AK153418|Grn|14824|granulin	AK153470|Grn|14824|granulin	AK154492|Grn|14824|granulin	AK160033|Grn|14824|granulin	AK159809|Grn|14824|granulin	AK150125|Grn|14824|granulin	AK151756|Grn|14824|granulin	AK150717|Grn|14824|granulin	AK159557|Grn|14824|granulin
mm9_v1_chr5_-_72559220_72559438	0.0675274	bHLH_family.p2	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr3_+_51028796_51028896	0.067496	bHLH_family.p2	AK084516|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AK041713|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AF199491|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chr10_+_51953390_51953445	0.0673243	bHLH_family.p2	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr12_+_112776424_112776453	0.0673203	bHLH_family.p2	AK076403|Eif5|217869|eukaryotic translation initiation factor 5	AK159232|Eif5|217869|eukaryotic translation initiation factor 5	AK160879|Eif5|217869|eukaryotic translation initiation factor 5	AK172048|Eif5|217869|eukaryotic translation initiation factor 5	AK163368|Eif5|217869|eukaryotic translation initiation factor 5	BC029003|Eif5|217869|eukaryotic translation initiation factor 5	BC056633|Eif5|217869|eukaryotic translation initiation factor 5
mm9_v1_chr5_-_69983484_69983543	0.0672458	bHLH_family.p2	AK220275|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK171299|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK166601|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	BC004084|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	NM_001038015|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK014950|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK015527|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK017588|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK051596|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK141408|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK168516|Gnpda2|67980|glucosamine-6-phosphate deaminase 2
mm9_v1_chr8_-_8660610_8660772	0.0671959	bHLH_family.p2	U30244|Efnb2|13642|ephrin B2	CT010381|Efnb2|13642|ephrin B2	U16819|Efnb2|13642|ephrin B2	L38847|Efnb2|13642|ephrin B2	NM_010111|Efnb2|13642|ephrin B2
mm9_v1_chr17_+_15841889_15842002	0.0670835	bHLH_family.p2	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr12_-_86217386_86217481	0.0670657	bHLH_family.p2	BC119785|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AK052980|Ltbp2|16997|latent transforming growth factor beta binding protein 2	NM_013589|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AF004874|Ltbp2|16997|latent transforming growth factor beta binding protein 2
mm9_v1_chr9_+_77602337_77602341	0.0668906	bHLH_family.p2	AK143228|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	AK144339|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr11_+_96891270_96891328	0.0668362	bHLH_family.p2	AK075869|Scrn2|217140|secernin 2	BC021346|Scrn2|217140|secernin 2	BC010784|Scrn2|217140|secernin 2
mm9_v1_chrX_+_71549202_71549226	0.0667836	bHLH_family.p2	
mm9_v1_chr5_-_68238444_68238587	0.0667067	bHLH_family.p2	BC129872|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	U75321|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK220560|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr7_-_25757587_25757746	0.0665526	bHLH_family.p2	L40934|Rabac1|14470|Rab acceptor 1 (prenylated)	AK009726|Rabac1|14470|Rab acceptor 1 (prenylated)	AK150681|Rabac1|14470|Rab acceptor 1 (prenylated)	AK008559|Rabac1|14470|Rab acceptor 1 (prenylated)	AF252856|Rabac1|14470|Rab acceptor 1 (prenylated)	AF120162|Rabac1|14470|Rab acceptor 1 (prenylated)	BC008242|Rabac1|14470|Rab acceptor 1 (prenylated)	AK170289|Rabac1|14470|Rab acceptor 1 (prenylated)	NM_010261|Rabac1|14470|Rab acceptor 1 (prenylated)
mm9_v1_chr19_+_6497834_6497837	0.0664109	bHLH_family.p2	
mm9_v1_chr12_+_70473519_70473535	0.0663745	bHLH_family.p2	AK006366|Arf6|11845|ADP-ribosylation factor 6
mm9_v1_chr10_-_62255007_62255115	0.0662723	bHLH_family.p2	BC034174|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC051052|Ccar1|67500|cell division cycle and apoptosis regulator 1	NM_026201|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr3_+_51028368_51028391	0.0660819	bHLH_family.p2	AK087790|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	NM_009834|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AF183960|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)	AK149340|Ccrn4l|12457|CCR4 carbon catabolite repression 4-like (S. cerevisiae)
mm9_v1_chr14_+_27852148_27852279	0.0658929	bHLH_family.p2	AF494210|Il17rd|171463|interleukin 17 receptor D	NM_134437|Il17rd|171463|interleukin 17 receptor D	BC138629|Il17rd|171463|interleukin 17 receptor D	BC066804|Il17rd|171463|interleukin 17 receptor D	AF459444|Il17rd|171463|interleukin 17 receptor D
mm9_v1_chr5_+_144165615_144165640	0.0658284	bHLH_family.p2	CT010232|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm9_v1_chrX_+_98572571_98572682	0.0657304	bHLH_family.p2	BC026833|Gjb1|14618|gap junction protein, beta 1	NM_008124|Gjb1|14618|gap junction protein, beta 1
mm9_v1_chr10_-_79373177_79373432	0.0656708	bHLH_family.p2	AK206142|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK206739|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK212119|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK180841|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK179327|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK207391|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218659|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218931|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr8_+_67471046_67471202	0.0655804	bHLH_family.p2	AK013998|Tmem192|73067|transmembrane protein 192	NM_001163747|Tmem192|73067|transmembrane protein 192	NM_028427|Tmem192|73067|transmembrane protein 192	AK168146|Tmem192|73067|transmembrane protein 192	AK046181|Tmem192|73067|transmembrane protein 192	AK132619|Tmem192|73067|transmembrane protein 192	BC020157|Tmem192|73067|transmembrane protein 192
mm9_v1_chr5_+_150921233_150921280	0.0655772	bHLH_family.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr9_+_72286335_72286422	0.065504	bHLH_family.p2	NM_008613|Mns1|17427|meiosis-specific nuclear structural protein 1	AK132772|Mns1|17427|meiosis-specific nuclear structural protein 1	AK013048|Mns1|17427|meiosis-specific nuclear structural protein 1	BC046624|Mns1|17427|meiosis-specific nuclear structural protein 1
mm9_v1_chr8_+_125091889_125091914	0.0654658	bHLH_family.p2	AF477481|Cdt1|67177|chromatin licensing and DNA replication factor 1	BC048076|Cdt1|67177|chromatin licensing and DNA replication factor 1	NM_026014|Cdt1|67177|chromatin licensing and DNA replication factor 1
mm9_v1_chr2_+_177876858_177876930	0.0654173	bHLH_family.p2	BC059869|Phactr3|74189|phosphatase and actin regulator 3	AK032242|Phactr3|74189|phosphatase and actin regulator 3	AY501387|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr1_+_181476534_181476659	0.065301	bHLH_family.p2	AK146681|Cnst|226744|consortin, connexin sorting protein	AK089290|Cnst|226744|consortin, connexin sorting protein	AK036332|Cnst|226744|consortin, connexin sorting protein	AK040899|Cnst|226744|consortin, connexin sorting protein	AK040666|Cnst|226744|consortin, connexin sorting protein	AK087361|Cnst|226744|consortin, connexin sorting protein	BC054802|Cnst|226744|consortin, connexin sorting protein	NM_146105|Cnst|226744|consortin, connexin sorting protein
mm9_v1_chr4_-_153400020_153400152	0.0650286	bHLH_family.p2	AK158109|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	BC055944|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK165247|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK167398|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK028394|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	AK012228|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	NM_001163721|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene	NM_001163722|1190007F08Rik|68859|RIKEN cDNA 1190007F08 gene
mm9_v1_chr19_+_10969734_10969805	0.064802	bHLH_family.p2	AK088769|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)	AF251503|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)	BC004070|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)	NM_134129|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
mm9_v1_chr3_-_120966206_120966262	0.0647719	bHLH_family.p2	BC040365|Tmem56|99887|transmembrane protein 56	NM_178936|Tmem56|99887|transmembrane protein 56	AK149544|Tmem56|99887|transmembrane protein 56
mm9_v1_chr11_-_115971521_115971577	0.0646112	bHLH_family.p2	AK031572|Trim47|217333|tripartite motif-containing 47	BC100317|Trim47|217333|tripartite motif-containing 47
mm9_v1_chr9_-_50467571_50467680	0.0645016	bHLH_family.p2	AK043771|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	BC031495|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	BC026680|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	BC069862|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	AK166090|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm9_v1_chr1_+_182499091_182499136	0.0644379	bHLH_family.p2	AK030889|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK088679|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	BC012041|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	NM_007415|Parp1|11545|poly (ADP-ribose) polymerase family, member 1	AK167699|Parp1|11545|poly (ADP-ribose) polymerase family, member 1
mm9_v1_chr4_+_138908480_138908511	0.0640375	bHLH_family.p2	NM_001039200|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	NM_146157|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr11_+_70783966_70784013	0.0638667	bHLH_family.p2	AK010289|Rpain|69723|RPA interacting protein	DQ810267|Rpain|69723|RPA interacting protein	DQ810268|Rpain|69723|RPA interacting protein	DQ810269|Rpain|69723|RPA interacting protein	DQ810270|Rpain|69723|RPA interacting protein	DQ810271|Rpain|69723|RPA interacting protein	DQ810272|Rpain|69723|RPA interacting protein
mm9_v1_chrX_-_133275812_133275890	0.0637986	bHLH_family.p2	AK089963|Morf4l2|56397|mortality factor 4 like 2	AK153146|Morf4l2|56397|mortality factor 4 like 2	AK075946|Morf4l2|56397|mortality factor 4 like 2	AK131944|Morf4l2|56397|mortality factor 4 like 2	AK145686|Morf4l2|56397|mortality factor 4 like 2	AK150401|Morf4l2|56397|mortality factor 4 like 2	AK150670|Morf4l2|56397|mortality factor 4 like 2	AK151570|Morf4l2|56397|mortality factor 4 like 2	AK159179|Morf4l2|56397|mortality factor 4 like 2	AK160012|Morf4l2|56397|mortality factor 4 like 2	AK164433|Morf4l2|56397|mortality factor 4 like 2	AK165985|Morf4l2|56397|mortality factor 4 like 2	AK159145|Morf4l2|56397|mortality factor 4 like 2	NM_001168226|Morf4l2|56397|mortality factor 4 like 2	NM_001168229|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr5_-_111082269_111082383	0.0636644	bHLH_family.p2	AK184847|Noc4l|100608|nucleolar complex associated 4 homolog (S. cerevisiae)	AK172310|Noc4l|100608|nucleolar complex associated 4 homolog (S. cerevisiae)
mm9_v1_chr3_+_130320365_130320530	0.063573	bHLH_family.p2	AK049937|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	NM_001163587|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	AK030395|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	AK005060|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	NM_027907|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC043680|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC022644|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC058592|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1
mm9_v1_chr14_+_79249036_79249063	0.0632747	bHLH_family.p2	AK033642|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	AK004956|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	BC019143|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene
mm9_v1_chr5_-_137774755_137774840	0.0631966	bHLH_family.p2	AK154118|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9	NM_031406|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9	AK050658|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9
mm9_v1_chr1_+_192922288_192922292	0.0631906	bHLH_family.p2	AK020278|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117083|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117085|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	NM_030060|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3
mm9_v1_chr9_-_54407955_54407999	0.0631498	bHLH_family.p2	AK005347|Cib2|56506|calcium and integrin binding family member 2	AK013240|Cib2|56506|calcium and integrin binding family member 2
mm9_v1_chr4_-_129255652_129255823	0.0631444	bHLH_family.p2	AK134621|Fam167b|230766|family with sequence similarity 167, member B	BC030183|Fam167b|230766|family with sequence similarity 167, member B	AK143928|Fam167b|230766|family with sequence similarity 167, member B	NM_182783|Fam167b|230766|family with sequence similarity 167, member B
mm9_v1_chr15_+_98860321_98860321	0.0631178	bHLH_family.p2	BC094022|Tuba1c|22146|tubulin, alpha 1C	NM_009448|Tuba1c|22146|tubulin, alpha 1C
mm9_v1_chr15_+_38837818_38837834	0.063114	bHLH_family.p2	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr9_+_56978554_56978597	0.0630239	bHLH_family.p2	AK170642|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK049370|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK153935|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK171110|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK158387|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK163077|Man2c1|73744|mannosidase, alpha, class 2C, member 1	BC016253|Man2c1|73744|mannosidase, alpha, class 2C, member 1	NM_028636|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK171599|Man2c1|73744|mannosidase, alpha, class 2C, member 1
mm9_v1_chr2_-_154718506_154718641	0.06298	bHLH_family.p2	BC113766|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC003848|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK019156|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK143553|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166862|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145401|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK012338|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC100539|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK076056|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK011503|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK042004|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166866|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145434|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	NM_026030|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm9_v1_chr5_-_130363202_130363339	0.0628286	bHLH_family.p2	AK088374|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	NM_024166|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2
mm9_v1_chr18_-_24280308_24280378	0.0626902	bHLH_family.p2	BC056426|Ino80c|225280|INO80 complex subunit C	AK083718|Ino80c|225280|INO80 complex subunit C	NM_172625|Ino80c|225280|INO80 complex subunit C	AK077290|Ino80c|225280|INO80 complex subunit C	BC060961|Ino80c|225280|INO80 complex subunit C
mm9_v1_chr2_-_11423651_11423672	0.0626266	bHLH_family.p2	AF294617|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK154607|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	BC057320|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr16_+_35939047_35939179	0.0625294	bHLH_family.p2	BC010312|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	AK037903|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	AK050032|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	BC003281|Parp9|80285|poly (ADP-ribose) polymerase family, member 9
mm9_v1_chr4_+_115769086_115769178	0.0624199	bHLH_family.p2	AK217820|Lrrc41|230654|leucine rich repeat containing 41
mm9_v1_chr16_+_58670320_58670440	0.0623304	bHLH_family.p2	NM_007757|Cpox|12892|coproporphyrinogen oxidase	D16333|Cpox|12892|coproporphyrinogen oxidase	AK157277|Cpox|12892|coproporphyrinogen oxidase
mm9_v1_chr5_+_92566909_92567009	0.0623197	bHLH_family.p2	AK166587|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	BC016069|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	NM_019490|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK156070|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK144638|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK172425|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK168433|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)
mm9_v1_chr4_+_111105832_111105976	0.0622784	bHLH_family.p2	BC051512|Bend5|67621|BEN domain containing 5
mm9_v1_chr12_+_75028976_75029036	0.0616951	bHLH_family.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr16_+_95924069_95924179	0.0615144	bHLH_family.p2	AK150175|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK014602|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	BC005486|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	J04103|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	BC005504|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK145852|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr6_+_54766562_54766917	0.0614647	bHLH_family.p2	AF513708|Znrf2|387524|zinc and ring finger 2	NM_199143|Znrf2|387524|zinc and ring finger 2	BC104316|Znrf2|387524|zinc and ring finger 2	BC104317|Znrf2|387524|zinc and ring finger 2	BC125242|Znrf2|387524|zinc and ring finger 2
mm9_v1_chr4_+_138908513_138908551	0.0614507	bHLH_family.p2	BC129804|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	BC139366|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK044277|Ubr4|69116|ubiquitin protein ligase E3 component n-recognin 4	AK089289|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK170739|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK138637|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK161677|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene	AK129052|C230096C10Rik|230866|RIKEN cDNA C230096C10 gene
mm9_v1_chr1_+_99666744_99666792	0.0613997	bHLH_family.p2	AK014287|Gin1|252876|gypsy retrotransposon integrase 1	AK018404|Gin1|252876|gypsy retrotransposon integrase 1	NM_026250|Gin1|252876|gypsy retrotransposon integrase 1	AK090002|Gin1|252876|gypsy retrotransposon integrase 1	AK015243|Gin1|252876|gypsy retrotransposon integrase 1	AK169361|Gin1|252876|gypsy retrotransposon integrase 1
mm9_v1_chr14_+_65885454_65885579	0.0613986	bHLH_family.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr14_+_21522300_21522310	0.0613935	bHLH_family.p2	AK010311|Chchd1|66121|coiled-coil-helix-coiled-coil-helix domain containing 1
mm9_v1_chr17_-_25252640_25252735	0.0612745	bHLH_family.p2	AK050773|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	AK028658|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	BC011077|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	AK084830|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	AK146963|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	AK004582|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	AK154727|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)
mm9_v1_chr4_-_96220294_96220351	0.0609892	bHLH_family.p2	AK045421|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	BC050832|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK033614|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	NM_010008|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK084025|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6
mm9_v1_chr1_+_122017763_122017771	0.060932	bHLH_family.p2	AK014026|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene	NM_001172074|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene	NM_028439|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene	BC028767|3110009E18Rik|73103|RIKEN cDNA 3110009E18 gene
mm9_v1_chr5_-_34856561_34856665	0.0608559	bHLH_family.p2	AK160165|Tnip2|231130|TNFAIP3 interacting protein 2	BC052083|Tnip2|231130|TNFAIP3 interacting protein 2	AJ304865|Tnip2|231130|TNFAIP3 interacting protein 2	NM_139064|Tnip2|231130|TNFAIP3 interacting protein 2
mm9_v1_chr8_+_24249481_24249576	0.0607184	bHLH_family.p2	U73972|Ank1|11733|ankyrin 1, erythroid	BC061219|Ank1|11733|ankyrin 1, erythroid	AK134267|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr4_-_131604821_131605088	0.0605933	bHLH_family.p2	BC079875|Epb4.1|269587|erythrocyte protein band 4.1	AK220462|Epb4.1|269587|erythrocyte protein band 4.1	NM_001128606|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chrX_+_45461901_45462257	0.0605057	bHLH_family.p2	AK172086|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	NM_133213|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF428102|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK164538|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK078835|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK087627|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK085520|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF367247|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	BC140977|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
mm9_v1_chr8_-_114154217_114154279	0.0604638	bHLH_family.p2	BC039155|Ldhd|52815|lactate dehydrogenase D	AY092768|Ldhd|52815|lactate dehydrogenase D	BC055443|Ldhd|52815|lactate dehydrogenase D	NM_027570|Ldhd|52815|lactate dehydrogenase D	AK029820|Ldhd|52815|lactate dehydrogenase D	AK014649|Ldhd|52815|lactate dehydrogenase D
mm9_v1_chr10_-_80317936_80317966	0.0604063	bHLH_family.p2	BC081444|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK003062|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK009317|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC027511|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK007462|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK012446|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK013355|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_025349|Lsm7|66094|LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr5_-_115750913_115750938	0.0601793	bHLH_family.p2	BC008106|Dynll1|56455|dynein light chain LC8-type 1	BC034258|Dynll1|56455|dynein light chain LC8-type 1	AF020185|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr5_-_135825744_135825913	0.0599414	bHLH_family.p2	AY029192|Fkbp6|94244|FK506 binding protein 6	AF367710|Fkbp6|94244|FK506 binding protein 6	AF367711|Fkbp6|94244|FK506 binding protein 6	NM_033571|Fkbp6|94244|FK506 binding protein 6	AF367709|Fkbp6|94244|FK506 binding protein 6	AK090036|Fkbp6|94244|FK506 binding protein 6	BC139092|Fkbp6|94244|FK506 binding protein 6	BC139097|Fkbp6|94244|FK506 binding protein 6
mm9_v1_chr7_+_147323460_147323573	0.0599194	bHLH_family.p2	NM_199301|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144625|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144453|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK140018|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	BC027306|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)
mm9_v1_chr11_+_70027581_70027626	0.0597987	bHLH_family.p2	AB041591|Slc16a11|216867|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm9_v1_chr7_-_52632087_52632104	0.0595889	bHLH_family.p2	AK180798|Snrnp70|20637|small nuclear ribonucleoprotein 70 (U1)
mm9_v1_chr7_-_4116102_4116147	0.059566	bHLH_family.p2	AF102773|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5	AF164119|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5	BC006758|Cdc42ep5|58804|CDC42 effector protein (Rho GTPase binding) 5
mm9_v1_chr8_-_37676995_37677010	0.0595149	bHLH_family.p2	AK162413|Dlc1|50768|deleted in liver cancer 1	NM_015802|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr7_-_86611065_86611158	0.0592801	bHLH_family.p2	BC080291|Polg|18975|polymerase (DNA directed), gamma	BC061472|Polg|18975|polymerase (DNA directed), gamma	AK135341|Polg|18975|polymerase (DNA directed), gamma	U53584|Polg|18975|polymerase (DNA directed), gamma	AK133584|Polg|18975|polymerase (DNA directed), gamma	BC053024|Polg|18975|polymerase (DNA directed), gamma	AK148091|Polg|18975|polymerase (DNA directed), gamma	NM_017462|Polg|18975|polymerase (DNA directed), gamma
mm9_v1_chr16_-_4213389_4213406	0.059261	bHLH_family.p2	BC072594|Crebbp|12914|CREB binding protein	NM_001025432|Crebbp|12914|CREB binding protein	BC010297|Crebbp|12914|CREB binding protein
mm9_v1_chr11_-_72029093_72029093	0.0592607	bHLH_family.p2	BC051929|Med31|67279|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)	NM_026068|Med31|67279|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm9_v1_chr5_-_3596298_3596546	0.0587746	bHLH_family.p2	BC029549|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene	NM_172991|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene
mm9_v1_chr14_-_55710878_55710884	0.0584211	bHLH_family.p2	AB190186|Zfhx2|239102|zinc finger homeobox 2	NM_001039198|Zfhx2|239102|zinc finger homeobox 2
mm9_v1_chr4_-_140609574_140609606	0.0583512	bHLH_family.p2	AF527975|Crocc|230872|ciliary rootlet coiled-coil, rootletin	NM_172122|Crocc|230872|ciliary rootlet coiled-coil, rootletin
mm9_v1_chr17_-_51972514_51972614	0.058096	bHLH_family.p2	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr10_+_66648458_66648510	0.0580194	bHLH_family.p2	AK087621|Jmjd1c|108829|jumonji domain containing 1C	AK170460|Jmjd1c|108829|jumonji domain containing 1C	AK135461|Jmjd1c|108829|jumonji domain containing 1C	AK085500|Jmjd1c|108829|jumonji domain containing 1C	AK133016|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr3_+_87710417_87710583	0.0580002	bHLH_family.p2	AK076021|Hdgf|15191|hepatoma-derived growth factor	AK005359|Hdgf|15191|hepatoma-derived growth factor	D63707|Hdgf|15191|hepatoma-derived growth factor	AK029475|Hdgf|15191|hepatoma-derived growth factor
mm9_v1_chr8_-_127275549_127275749	0.0579357	bHLH_family.p2	BC023460|Fam89a|69627|family with sequence similarity 89, member A	BC115734|Fam89a|69627|family with sequence similarity 89, member A	BC115819|Fam89a|69627|family with sequence similarity 89, member A	NM_001081120|Fam89a|69627|family with sequence similarity 89, member A
mm9_v1_chr17_+_36016712_36016724	0.0578984	bHLH_family.p2	NM_026987|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm9_v1_chr6_+_83745021_83745052	0.0574318	bHLH_family.p2	AK007240|Nagk|56174|N-acetylglucosamine kinase	AK084646|Nagk|56174|N-acetylglucosamine kinase	AJ242909|Nagk|56174|N-acetylglucosamine kinase	NM_019542|Nagk|56174|N-acetylglucosamine kinase	AK089238|Nagk|56174|N-acetylglucosamine kinase
mm9_v1_chr11_-_75346554_75346608	0.0573301	bHLH_family.p2	
mm9_v1_chr19_-_6932673_6932702	0.0572186	bHLH_family.p2	BC151001|Ccdc88b|78317|coiled-coil domain containing 88B	BC151009|Ccdc88b|78317|coiled-coil domain containing 88B	BC157946|Ccdc88b|78317|coiled-coil domain containing 88B	NM_001081291|Ccdc88b|78317|coiled-coil domain containing 88B
mm9_v1_chr17_+_44325518_44325614	0.0572038	bHLH_family.p2	NM_172621|Clic5|224796|chloride intracellular channel 5	AK046522|Clic5|224796|chloride intracellular channel 5	BC064037|Clic5|224796|chloride intracellular channel 5	AK017800|Clic5|224796|chloride intracellular channel 5
mm9_v1_chr14_+_57506630_57506655	0.0569244	bHLH_family.p2	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr2_+_37631768_37631768	0.0565418	bHLH_family.p2	NM_001163566|Crb2|241324|crumbs homolog 2 (Drosophila)
mm9_v1_chr3_+_115711207_115711327	0.0565337	bHLH_family.p2	NM_001163514|Extl2|58193|exostoses (multiple)-like 2	AF200973|Extl2|58193|exostoses (multiple)-like 2	AK019370|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr17_+_5343877_5344040	0.0564801	bHLH_family.p2	AK049919|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK021005|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK048918|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr18_-_5334425_5334436	0.0564334	bHLH_family.p2	AK020518|Zfp438|240186|zinc finger protein 438	AK046812|Zfp438|240186|zinc finger protein 438	AK034745|Zfp438|240186|zinc finger protein 438	BC096460|Zfp438|240186|zinc finger protein 438	NM_178722|Zfp438|240186|zinc finger protein 438
mm9_v1_chr15_-_36723995_36724005	0.056091	bHLH_family.p2	BC050891|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr8_-_33028674_33028862	0.0559645	bHLH_family.p2	AY648975|Nrg1|211323|neuregulin 1	NM_178591|Nrg1|211323|neuregulin 1	BC151113|Nrg1|211323|neuregulin 1	AK164499|Nrg1|211323|neuregulin 1	AK048708|Nrg1|211323|neuregulin 1	AK141037|Nrg1|211323|neuregulin 1
mm9_v1_chr14_+_69789858_69790075	0.0558565	bHLH_family.p2	AF045150|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	BC132558|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	BC139035|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	AK006401|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	BC100425|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	AF030113|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	AK007304|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)	NM_010920|Nkx2-6|18092|NK2 transcription factor related, locus 6 (Drosophila)
mm9_v1_chr3_-_89716963_89717124	0.0558457	bHLH_family.p2	X51976|Il6ra|16194|interleukin 6 receptor, alpha	X51975|Il6ra|16194|interleukin 6 receptor, alpha	BC019388|Il6ra|16194|interleukin 6 receptor, alpha	X53802|Il6ra|16194|interleukin 6 receptor, alpha	AK046337|Il6ra|16194|interleukin 6 receptor, alpha	AK082270|Il6ra|16194|interleukin 6 receptor, alpha	NM_010559|Il6ra|16194|interleukin 6 receptor, alpha	AK141197|Il6ra|16194|interleukin 6 receptor, alpha
mm9_v1_chr9_-_107516538_107516684	0.0556246	bHLH_family.p2	
mm9_v1_chr2_-_101489613_101489698	0.0556045	bHLH_family.p2	BC138342|Rag1|19373|recombination activating gene 1	M29475|Rag1|19373|recombination activating gene 1	AK088725|Rag1|19373|recombination activating gene 1	AK162974|Rag1|19373|recombination activating gene 1	DQ112091|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	DQ112092|B230118H07Rik|68170|RIKEN cDNA B230118H07 gene	NM_009019|Rag1|19373|recombination activating gene 1
mm9_v1_chr19_-_12870612_12870615	0.0555329	bHLH_family.p2	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr10_+_80720062_80720086	0.0554909	bHLH_family.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr13_-_96661704_96661910	0.0554738	bHLH_family.p2	BC094939|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC052916|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK080384|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK147360|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC150958|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK142813|Iqgap2|544963|IQ motif containing GTPase activating protein 2	NM_027711|Iqgap2|544963|IQ motif containing GTPase activating protein 2
mm9_v1_chr2_+_163051189_163051200	0.0553661	bHLH_family.p2	NM_001098799|Tox2|269389|TOX high mobility group box family member 2
mm9_v1_chr18_-_15471207_15471211	0.055357	bHLH_family.p2	AK088053|E430002N23Rik|319440|RIKEN cDNA E430002N23 gene
mm9_v1_chr11_+_94491207_94491351	0.0553083	bHLH_family.p2	AK183165|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr15_+_10882086_10882145	0.055246	bHLH_family.p2	AK128898|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AF246265|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK029352|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK075867|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	AK081704|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	NM_030888|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC055047|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC019636|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3	BC055859|C1qtnf3|81799|C1q and tumor necrosis factor related protein 3
mm9_v1_chr17_-_45704908_45704999	0.0551189	bHLH_family.p2	
mm9_v1_chr5_+_140981603_140981636	0.0548035	bHLH_family.p2	AK170209|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr18_+_42671147_42671160	0.0545879	bHLH_family.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr13_+_35833181_35833351	0.0545734	bHLH_family.p2	BC062123|Cdyl|12593|chromodomain protein, Y chromosome-like	AK156509|Cdyl|12593|chromodomain protein, Y chromosome-like	NM_001123386|Cdyl|12593|chromodomain protein, Y chromosome-like
mm9_v1_chr14_-_69902859_69902968	0.0544982	bHLH_family.p2	AK015770|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr6_+_21899614_21899692	0.0544477	bHLH_family.p2	NM_023626|Ing3|71777|inhibitor of growth family, member 3	AY007791|Ing3|71777|inhibitor of growth family, member 3	AK080787|Ing3|71777|inhibitor of growth family, member 3	AK131993|Ing3|71777|inhibitor of growth family, member 3	BC018342|Ing3|71777|inhibitor of growth family, member 3
mm9_v1_chr2_-_32115484_32115630	0.0543052	bHLH_family.p2	L31783|Uck1|22245|uridine-cytidine kinase 1	BC025146|Uck1|22245|uridine-cytidine kinase 1	NM_011675|Uck1|22245|uridine-cytidine kinase 1
mm9_v1_chr17_+_48499240_48499243	0.0539124	bHLH_family.p2	AK017256|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	AK079428|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	AY078502|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	AY286071|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	NM_027763|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	BC138399|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	BC145263|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	DQ087181|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	DQ087182|Treml1|71326|triggering receptor expressed on myeloid cells-like 1	DQ087183|Treml1|71326|triggering receptor expressed on myeloid cells-like 1
mm9_v1_chr15_+_76175485_76175500	0.0537937	bHLH_family.p2	
mm9_v1_chr9_+_14589080_14589119	0.0535381	bHLH_family.p2	U58987|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	U60318|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168208|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146234|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146370|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168180|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)
mm9_v1_chr17_-_56256668_56256720	0.0534591	bHLH_family.p2	AY919875|Plin5|66968|perilipin 5	NM_001077348|Plin5|66968|perilipin 5
mm9_v1_chr15_-_82996562_82996627	0.0533992	bHLH_family.p2	AK202011|Cyb5r3|109754|cytochrome b5 reductase 3	AK208840|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr4_-_40895112_40895202	0.0531778	bHLH_family.p2	AF019889|Bag1|12017|BCL2-associated athanogene 1	AK195259|Bag1|12017|BCL2-associated athanogene 1
mm9_v1_chr6_-_24614975_24615061	0.0530833	bHLH_family.p2	AK143969|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK014104|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC058642|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_001167745|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_028459|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr9_+_108847401_108847459	0.0529575	bHLH_family.p2	AK189558|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK190382|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK214419|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK218783|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK188076|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr9_-_89599660_89599893	0.0529097	bHLH_family.p2	BC023338|Tmed3|66111|transmembrane emp24 domain containing 3	AK007544|Tmed3|66111|transmembrane emp24 domain containing 3	AK002698|Tmed3|66111|transmembrane emp24 domain containing 3	AK004545|Tmed3|66111|transmembrane emp24 domain containing 3	NM_025360|Tmed3|66111|transmembrane emp24 domain containing 3
mm9_v1_chr10_+_34018323_34018472	0.0528021	bHLH_family.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chr2_+_129024496_129024619	0.0527372	bHLH_family.p2	NM_001159593|Slc20a1|20515|solute carrier family 20, member 1	NM_015747|Slc20a1|20515|solute carrier family 20, member 1	AK084159|Slc20a1|20515|solute carrier family 20, member 1	AK155506|Slc20a1|20515|solute carrier family 20, member 1	AK035898|Slc20a1|20515|solute carrier family 20, member 1	AK089184|Slc20a1|20515|solute carrier family 20, member 1	AK003059|Slc20a1|20515|solute carrier family 20, member 1	BC015085|Slc20a1|20515|solute carrier family 20, member 1
mm9_v1_chr17_-_13185043_13185130	0.052634	bHLH_family.p2	BC046416|Wtap|60532|Wilms' tumour 1-associating protein	BC047338|Wtap|60532|Wilms' tumour 1-associating protein	BC093504|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113532|Wtap|60532|Wilms' tumour 1-associating protein	NM_001113533|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr17_-_85189899_85189902	0.052501	bHLH_family.p2	AK039751|Lrpprc|72416|leucine-rich PPR-motif containing
mm9_v1_chr7_-_26601526_26601576	0.0521407	bHLH_family.p2	AK087069|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	AK004699|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	NM_028775|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	BC064733|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1	AK054324|Cyp2s1|74134|cytochrome P450, family 2, subfamily s, polypeptide 1
mm9_v1_chr8_-_87542451_87542752	0.0517283	bHLH_family.p2	AK212827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK183718|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK193379|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK180403|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK205686|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK216431|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr2_-_148701126_148701154	0.051701	bHLH_family.p2	M59470|Cst3|13010|cystatin C	BC002072|Cst3|13010|cystatin C
mm9_v1_chr7_-_109248742_109248742	0.0516859	bHLH_family.p2	AK132854|Art5|11875|ADP-ribosyltransferase 5	NM_007491|Art5|11875|ADP-ribosyltransferase 5
mm9_v1_chr11_-_121380601_121380655	0.0516555	bHLH_family.p2	AK037240|Zfp750|319530|zinc finger protein 750	AK028879|Zfp750|319530|zinc finger protein 750	AK030690|Zfp750|319530|zinc finger protein 750	BC080834|Zfp750|319530|zinc finger protein 750	AK037185|Zfp750|319530|zinc finger protein 750	AK076268|Zfp750|319530|zinc finger protein 750	AK140792|Zfp750|319530|zinc finger protein 750	NM_178763|Zfp750|319530|zinc finger protein 750
mm9_v1_chrX_-_35988178_35988234	0.0515144	bHLH_family.p2	AB030184|C1galt1c1|59048|C1GALT1-specific chaperone 1	AY159320|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr4_+_135699733_135699741	0.0514413	bHLH_family.p2	BC145871|Id3|15903|inhibitor of DNA binding 3	BC145873|Id3|15903|inhibitor of DNA binding 3	M60523|Id3|15903|inhibitor of DNA binding 3	NM_008321|Id3|15903|inhibitor of DNA binding 3	AK002820|Id3|15903|inhibitor of DNA binding 3	AK031499|Id3|15903|inhibitor of DNA binding 3
mm9_v1_chr11_-_60590750_60590788	0.0513841	bHLH_family.p2	AK164443|Top3a|21975|topoisomerase (DNA) III alpha	AK037640|Top3a|21975|topoisomerase (DNA) III alpha	AK170291|Top3a|21975|topoisomerase (DNA) III alpha	AK171286|Top3a|21975|topoisomerase (DNA) III alpha
mm9_v1_chr13_-_58228748_58228812	0.0510128	bHLH_family.p2	BC023150|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr10_+_79144868_79145048	0.0506959	bHLH_family.p2	BC039160|Cdc34|216150|cell division cycle 34 homolog (S. cerevisiae)	NM_177613|Cdc34|216150|cell division cycle 34 homolog (S. cerevisiae)	BC094502|Cdc34|216150|cell division cycle 34 homolog (S. cerevisiae)
mm9_v1_chr3_+_145541951_145541971	0.0506135	bHLH_family.p2	
mm9_v1_chr9_-_53475519_53475552	0.050599	bHLH_family.p2	BC075710|Cul5|75717|cullin 5
mm9_v1_chr12_+_112088488_112088532	0.0504831	bHLH_family.p2	BC150732|Zfp839|72805|zinc finger protein 839	NM_028365|Zfp839|72805|zinc finger protein 839	AK013356|Zfp839|72805|zinc finger protein 839
mm9_v1_chr11_-_63735652_63735808	0.050165	bHLH_family.p2	BC116733|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	BC116743|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AF168992|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK171996|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172015|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172271|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	NM_018805|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK085242|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
mm9_v1_chr14_-_70605828_70605932	0.0501566	bHLH_family.p2	AB190911|Sorbs3|20410|sorbin and SH3 domain containing 3
mm9_v1_chr8_+_37520601_37520649	0.0498713	bHLH_family.p2	AK032504|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene	AK038497|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene	AK089162|6430573F11Rik|319582|RIKEN cDNA 6430573F11 gene
mm9_v1_chr5_+_31252402_31252480	0.0498583	bHLH_family.p2	AF189764|Abhd1|57742|abhydrolase domain containing 1	AK156413|Abhd1|57742|abhydrolase domain containing 1	AK162873|Abhd1|57742|abhydrolase domain containing 1	BC013505|Abhd1|57742|abhydrolase domain containing 1	NM_021304|Abhd1|57742|abhydrolase domain containing 1
mm9_v1_chr10_+_85484857_85484907	0.0498566	bHLH_family.p2	AK219779|Fbxo7|69754|F-box protein 7
mm9_v1_chr10_+_79635688_79635690	0.0498007	bHLH_family.p2	AK005397|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	AK168176|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	NM_027207|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	AK050606|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	BC146018|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene	BC146020|1600002K03Rik|69770|RIKEN cDNA 1600002K03 gene
mm9_v1_chr18_+_35278585_35278617	0.0497881	bHLH_family.p2	BC105576|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK004623|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr8_-_63462080_63462110	0.0496461	bHLH_family.p2	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr14_-_79880743_79880916	0.0495396	bHLH_family.p2	AK161496|Wbp4|22380|WW domain binding protein 4	BC034851|Wbp4|22380|WW domain binding protein 4	AK019160|Wbp4|22380|WW domain binding protein 4	AK160559|Wbp4|22380|WW domain binding protein 4	AK162009|Wbp4|22380|WW domain binding protein 4	AF071184|Wbp4|22380|WW domain binding protein 4
mm9_v1_chr11_+_60230781_60230944	0.0493943	bHLH_family.p2	AK164644|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC052418|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK012042|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC046821|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK142753|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	BC044901|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr15_+_99239082_99239188	0.0493421	bHLH_family.p2	AK039762|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK003483|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr7_+_148662315_148662353	0.0492347	bHLH_family.p2	BC003482|Tspan4|64540|tetraspanin 4
mm9_v1_chr18_-_60783946_60784004	0.049206	bHLH_family.p2	AK154958|Synpo|104027|synaptopodin	NM_177340|Synpo|104027|synaptopodin
mm9_v1_chr5_-_36071698_36071756	0.049167	bHLH_family.p2	AK150064|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK159089|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK170396|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK170383|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1
mm9_v1_chr2_+_125072955_125073018	0.0491373	bHLH_family.p2	AK135438|Dut|110074|deoxyuridine triphosphatase	NM_001159646|Dut|110074|deoxyuridine triphosphatase	AK017216|Dut|110074|deoxyuridine triphosphatase	BC019979|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr10_-_86164623_86164759	0.0490643	bHLH_family.p2	AK031918|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160827|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215377|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215142|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210698|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210697|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK205935|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK216702|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK218021|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK186620|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chrX_-_71481072_71481146	0.0488397	bHLH_family.p2	BC039208|Flna|192176|filamin, alpha
mm9_v1_chr4_-_108311676_108311740	0.0485408	bHLH_family.p2	
mm9_v1_chr13_+_30428224_30428325	0.0484605	bHLH_family.p2	NM_177322|Agtr1a|11607|angiotensin II receptor, type 1a	AK007990|Agtr1a|11607|angiotensin II receptor, type 1a	BC036175|Agtr1a|11607|angiotensin II receptor, type 1a
mm9_v1_chr5_+_67652034_67652135	0.0484185	bHLH_family.p2	BC016570|Tmem33|67878|transmembrane protein 33	BC023966|Tmem33|67878|transmembrane protein 33	AK019127|Tmem33|67878|transmembrane protein 33
mm9_v1_chr10_-_58684199_58684290	0.0482154	bHLH_family.p2	BC053752|Sept10|103080|septin 10
mm9_v1_chr6_+_31170394_31170443	0.048057	bHLH_family.p2	BC099512|2210408F21Rik|73652|RIKEN cDNA 2210408F21 gene	AK008857|2210408F21Rik|73652|RIKEN cDNA 2210408F21 gene	BC021953|2210408F21Rik|73652|RIKEN cDNA 2210408F21 gene
mm9_v1_chr9_+_21875410_21875475	0.0479703	bHLH_family.p2	AK154427|LOC100503652|100503652|hypothetical LOC100503652
mm9_v1_chr15_-_55738264_55738503	0.0479505	bHLH_family.p2	BC003748|Sntb1|20649|syntrophin, basic 1	U89997|Sntb1|20649|syntrophin, basic 1	NM_016667|Sntb1|20649|syntrophin, basic 1
mm9_v1_chr6_+_124654080_124654110	0.0477173	bHLH_family.p2	AK194975|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3
mm9_v1_chr2_-_155648591_155648734	0.0476381	bHLH_family.p2	AK198737|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr19_-_45080871_45080957	0.0476128	bHLH_family.p2	BC027676|Mrpl43|94067|mitochondrial ribosomal protein L43	BC065812|Mrpl43|94067|mitochondrial ribosomal protein L43	AK076204|Mrpl43|94067|mitochondrial ribosomal protein L43	AB049657|Mrpl43|94067|mitochondrial ribosomal protein L43	AK015357|Mrpl43|94067|mitochondrial ribosomal protein L43	BC048733|Mrpl43|94067|mitochondrial ribosomal protein L43	NM_053164|Mrpl43|94067|mitochondrial ribosomal protein L43
mm9_v1_chr7_+_134944168_134944205	0.0475877	bHLH_family.p2	BC006822|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC018525|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC132605|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	BC138589|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AF277718|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr14_-_122196929_122196955	0.0475692	bHLH_family.p2	NM_134074|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr2_-_151458256_151458277	0.0475035	bHLH_family.p2	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr6_-_124662063_124662115	0.0474655	bHLH_family.p2	BC002004|Emg1|14791|EMG1 nucleolar protein homolog (S. cerevisiae)
mm9_v1_chr13_-_67461473_67461507	0.0473746	bHLH_family.p2	BC141233|Zfp953|629016|zinc finger protein 953	AK143165|Zfp953|629016|zinc finger protein 953	NM_001038651|Zfp953|629016|zinc finger protein 953
mm9_v1_chr5_+_67137106_67137134	0.047355	bHLH_family.p2	
mm9_v1_chr6_-_116532961_116533048	0.0471767	bHLH_family.p2	NM_146446|Olfr215|258438|olfactory receptor 215	BC125561|Olfr215|258438|olfactory receptor 215	BC125563|Olfr215|258438|olfactory receptor 215
mm9_v1_chr2_+_12845713_12845788	0.0470452	bHLH_family.p2	AK012076|Pter|19212|phosphotriesterase related	AK135948|Pter|19212|phosphotriesterase related	AK075604|Pter|19212|phosphotriesterase related	U28016|Pter|19212|phosphotriesterase related	BC003793|Pter|19212|phosphotriesterase related	AK178461|Pter|19212|phosphotriesterase related	AK178809|Pter|19212|phosphotriesterase related	AK182714|Pter|19212|phosphotriesterase related	AK207887|Pter|19212|phosphotriesterase related	AK216138|Pter|19212|phosphotriesterase related
mm9_v1_chr4_+_129168433_129168515	0.0467937	bHLH_family.p2	NM_001085491|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK018987|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK006760|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK018964|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	AK018907|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene	BC048660|1700125D06Rik|68233|RIKEN cDNA 1700125D06 gene
mm9_v1_chr3_-_126701320_126701358	0.0467712	bHLH_family.p2	BC059251|Ank2|109676|ankyrin 2, brain	AK082352|Ank2|109676|ankyrin 2, brain
mm9_v1_chr4_+_155336386_155336439	0.0466548	bHLH_family.p2	AK004116|Fam132a|67389|family with sequence similarity 132, member A	NM_026125|Fam132a|67389|family with sequence similarity 132, member A	AK007335|Fam132a|67389|family with sequence similarity 132, member A	AK002876|Fam132a|67389|family with sequence similarity 132, member A
mm9_v1_chr9_-_96379093_96379128	0.0466326	bHLH_family.p2	AK006703|Rnf7|19823|ring finger protein 7
mm9_v1_chr2_+_130250035_130250123	0.0464922	bHLH_family.p2	NM_030559|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK169694|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK162984|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK049872|Vps16|80743|vacuolar protein sorting 16 (yeast)	AB056721|Vps16|80743|vacuolar protein sorting 16 (yeast)
mm9_v1_chr16_-_13903055_13903162	0.0462854	bHLH_family.p2	BC005541|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK165587|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK030613|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK033107|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK163696|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK004611|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1
mm9_v1_chr6_-_60778740_60778989	0.0460194	bHLH_family.p2	BC046764|Snca|20617|synuclein, alpha	AK156316|Snca|20617|synuclein, alpha	AK014472|Snca|20617|synuclein, alpha	AF033261|Snca|20617|synuclein, alpha	NM_001042451|Snca|20617|synuclein, alpha
mm9_v1_chr10_-_126467848_126467902	0.0459118	bHLH_family.p2	BC034286|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK020437|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK169164|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK018591|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK141183|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK012240|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK171656|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK172112|Tsfm|66399|Ts translation elongation factor, mitochondrial	BC057904|Tsfm|66399|Ts translation elongation factor, mitochondrial	NM_025537|Tsfm|66399|Ts translation elongation factor, mitochondrial
mm9_v1_chr11_+_105829364_105829480	0.0456124	bHLH_family.p2	BC083109|Ace|11421|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm9_v1_chr8_+_87604638_87604668	0.0454834	bHLH_family.p2	AK147129|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr2_-_35316760_35317051	0.0453664	bHLH_family.p2	BC006810|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK088605|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M26925|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M85153|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AF297615|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_001145821|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_010283|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK004753|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK159087|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3
mm9_v1_chr9_+_123276054_123276170	0.0453035	bHLH_family.p2	AK037012|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	AJ428066|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	NM_153168|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	AK053667|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC053916|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC138206|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC145982|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC111892|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC112412|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	AK045640|Lars2|102436|leucyl-tRNA synthetase, mitochondrial	BC080303|Lars2|102436|leucyl-tRNA synthetase, mitochondrial
mm9_v1_chr9_-_21889810_21889832	0.04528	bHLH_family.p2	BC016424|Ecsit|26940|ECSIT homolog (Drosophila)	AF182510|Ecsit|26940|ECSIT homolog (Drosophila)	NM_012029|Ecsit|26940|ECSIT homolog (Drosophila)
mm9_v1_chr13_-_34027874_34027951	0.0452043	bHLH_family.p2	NM_001164117|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	NM_001164118|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a	NM_009254|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm9_v1_chr15_+_58247016_58247063	0.0451212	bHLH_family.p2	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr2_+_36086008_36086055	0.0450137	bHLH_family.p2	AK138432|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK046457|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK142741|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK163609|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170664|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK160886|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC005573|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC023322|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	M34141|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170414|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr10_-_13588578_13588812	0.0448456	bHLH_family.p2	AK008210|Aig1|66253|androgen-induced 1	NM_025446|Aig1|66253|androgen-induced 1	AK162306|Aig1|66253|androgen-induced 1	AK005332|Aig1|66253|androgen-induced 1	AK084050|Aig1|66253|androgen-induced 1	BC035305|Aig1|66253|androgen-induced 1
mm9_v1_chr9_-_112137467_112137521	0.0448156	bHLH_family.p2	AK153892|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr4_+_108507258_108507370	0.044762	bHLH_family.p2	BC006857|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	NM_025334|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	AK002862|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	AK003481|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)	AY548113|Txndc12|66073|thioredoxin domain containing 12 (endoplasmic reticulum)
mm9_v1_chrX_+_20447291_20447426	0.0443552	bHLH_family.p2	NM_001044384|Timp1|21857|tissue inhibitor of metalloproteinase 1	NM_011593|Timp1|21857|tissue inhibitor of metalloproteinase 1	X04684|Timp1|21857|tissue inhibitor of metalloproteinase 1	BC008107|Timp1|21857|tissue inhibitor of metalloproteinase 1	BC034260|Timp1|21857|tissue inhibitor of metalloproteinase 1	BC051260|Timp1|21857|tissue inhibitor of metalloproteinase 1	M17243|Timp1|21857|tissue inhibitor of metalloproteinase 1
mm9_v1_chr14_-_71166340_71166465	0.0443418	bHLH_family.p2	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr6_+_48791481_48791563	0.0442868	bHLH_family.p2	NM_025326|Tmem176a|66058|transmembrane protein 176A	AK002546|Tmem176a|66058|transmembrane protein 176A	AK004315|Tmem176a|66058|transmembrane protein 176A	AK165660|Tmem176a|66058|transmembrane protein 176A	AK150576|Tmem176a|66058|transmembrane protein 176A	AK079378|Tmem176a|66058|transmembrane protein 176A	BC010831|Tmem176a|66058|transmembrane protein 176A	AK162991|Tmem176a|66058|transmembrane protein 176A
mm9_v1_chr13_-_104564553_104564699	0.0441628	bHLH_family.p2	AK039311|Srsf12|218543|serine/arginine-rich splicing factor 12	AK052265|Srsf12|218543|serine/arginine-rich splicing factor 12
mm9_v1_chr14_-_9005451_9005513	0.0437969	bHLH_family.p2	BC094468|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK153058|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK167798|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK014180|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK084507|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK011810|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK163596|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	BC019512|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK014918|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	AK166631|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta	NM_024221|Pdhb|68263|pyruvate dehydrogenase (lipoamide) beta
mm9_v1_chr3_+_90070455_90070469	0.043795	bHLH_family.p2	NM_201407|Dennd4b|229541|DENN/MADD domain containing 4B	AK155638|Dennd4b|229541|DENN/MADD domain containing 4B
mm9_v1_chr5_+_141180963_141181044	0.0437484	bHLH_family.p2	AK170269|AA881470|231841|EST AA881470	AK049321|AA881470|231841|EST AA881470	AK084987|AA881470|231841|EST AA881470	AK085091|AA881470|231841|EST AA881470	NM_172724|AA881470|231841|EST AA881470	NM_181066|AA881470|231841|EST AA881470	AK154448|AA881470|231841|EST AA881470	AK043212|AA881470|231841|EST AA881470	AK142387|AA881470|231841|EST AA881470
mm9_v1_chr7_-_52381569_52381578	0.0434133	bHLH_family.p2	BC034450|Rpl13a|22121|ribosomal protein L13A	BC042392|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr15_+_12134782_12134813	0.0433999	bHLH_family.p2	AK030139|Mtmr12|268783|myotubularin related protein 12	AK122539|Mtmr12|268783|myotubularin related protein 12
mm9_v1_chr15_+_76175584_76175587	0.0432337	bHLH_family.p2	AK177843|Cyc1|66445|cytochrome c-1	AK187999|Cyc1|66445|cytochrome c-1
mm9_v1_chr11_-_6174799_6174821	0.0431363	bHLH_family.p2	AK182125|Tmed4|103694|transmembrane emp24 protein transport domain containing 4
mm9_v1_chr5_-_114723758_114723815	0.0431091	bHLH_family.p2	BC092242|Foxn4|116810|forkhead box N4	AF323488|Foxn4|116810|forkhead box N4	BC130222|Foxn4|116810|forkhead box N4	NM_148935|Foxn4|116810|forkhead box N4	AY039039|Foxn4|116810|forkhead box N4
mm9_v1_chr10_+_82092582_82092692	0.0430832	bHLH_family.p2	NM_011561|Tdg|21665|thymine DNA glycosylase	NM_172552|Tdg|21665|thymine DNA glycosylase	AK089915|Gm9855|624784|thymine DNA glycosylase pseudogene	BC085471|Tdg|21665|thymine DNA glycosylase	AK164643|Tdg|21665|thymine DNA glycosylase	AK166357|Tdg|21665|thymine DNA glycosylase	AK164090|Tdg|21665|thymine DNA glycosylase	AF069519|Gm9855|624784|thymine DNA glycosylase pseudogene	BC085470|Tdg|21665|thymine DNA glycosylase	AK053870|Tdg|21665|thymine DNA glycosylase	AK169768|Tdg|21665|thymine DNA glycosylase	BC010315|Tdg|21665|thymine DNA glycosylase
mm9_v1_chr5_+_116010796_116010949	0.0428512	bHLH_family.p2	BC030189|Rplp0|11837|ribosomal protein, large, P0	AK193996|Rplp0|11837|ribosomal protein, large, P0	AK205179|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr4_+_41707315_41707331	0.0426997	bHLH_family.p2	NM_001163401|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	NM_001172054|Il11ra1|16157|interleukin 11 receptor, alpha chain 1
mm9_v1_chr19_+_42245160_42245205	0.0426453	bHLH_family.p2	AK048822|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr9_-_54407862_54407915	0.0423947	bHLH_family.p2	AB016080|Cib2|56506|calcium and integrin binding family member 2	NM_019686|Cib2|56506|calcium and integrin binding family member 2	BC005739|Cib2|56506|calcium and integrin binding family member 2
mm9_v1_chr7_+_104629465_104629553	0.0423589	bHLH_family.p2	NM_027256|Ints4|101861|integrator complex subunit 4	AK163383|Ints4|101861|integrator complex subunit 4	AK088635|Ints4|101861|integrator complex subunit 4	BC013710|Ints4|101861|integrator complex subunit 4
mm9_v1_chr12_+_112776539_112776573	0.0423543	bHLH_family.p2	BC019769|Eif5|217869|eukaryotic translation initiation factor 5	BC012220|Eif5|217869|eukaryotic translation initiation factor 5	BC023074|Eif5|217869|eukaryotic translation initiation factor 5
mm9_v1_chr6_-_5143755_5143945	0.042262	bHLH_family.p2	BC012706|Pon1|18979|paraoxonase 1	U72636|Pon1|18979|paraoxonase 1	U32684|Pon1|18979|paraoxonase 1	NM_011134|Pon1|18979|paraoxonase 1
mm9_v1_chrX_+_166123130_166123181	0.0421318	bHLH_family.p2	AK160120|Mid1|17318|midline 1	NM_010797|Mid1|17318|midline 1	Y14848|Mid1|17318|midline 1
mm9_v1_chr7_+_128061257_128061281	0.0421255	bHLH_family.p2	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr11_-_60717472_60717561	0.0420682	bHLH_family.p2	
mm9_v1_chr6_+_48986501_48986620	0.0419278	bHLH_family.p2	NM_053110|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK171517|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK149740|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK154617|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159270|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK159165|Gpnmb|93695|glycoprotein (transmembrane) nmb	AK170506|Gpnmb|93695|glycoprotein (transmembrane) nmb
mm9_v1_chr18_+_34932278_34932429	0.0412781	bHLH_family.p2	AK012724|Fam53c|66306|family with sequence similarity 53, member C	AK205811|Fam53c|66306|family with sequence similarity 53, member C
mm9_v1_chr1_+_166205728_166205836	0.0411759	bHLH_family.p2	BC060044|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	NM_029115|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK076640|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK149168|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK015464|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	BC048086|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene
mm9_v1_chr18_+_80666460_80666475	0.0411032	bHLH_family.p2	AK085185|Gm9456|669389|predicted gene 9456
mm9_v1_chr5_-_31999977_32000001	0.0409575	bHLH_family.p2	BC023339|Rbks|71336|ribokinase	NM_153196|Rbks|71336|ribokinase	AK017229|Rbks|71336|ribokinase	AK138939|Rbks|71336|ribokinase
mm9_v1_chr4_+_43576357_43576371	0.0408922	bHLH_family.p2	AK007665|Creb3|12913|cAMP responsive element binding protein 3
mm9_v1_chr6_-_52590285_52590317	0.040708	bHLH_family.p2	BC003914|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase	NM_145567|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase
mm9_v1_chr19_+_43764161_43764183	0.0406516	bHLH_family.p2	AK170546|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	NM_053103|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr2_+_92215395_92215518	0.040633	bHLH_family.p2	AK143073|Pex16|18633|peroxisomal biogenesis factor 16	NM_145122|Pex16|18633|peroxisomal biogenesis factor 16
mm9_v1_chr8_+_11728104_11728202	0.0403248	bHLH_family.p2	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr14_+_31528800_31528932	0.0402724	bHLH_family.p2	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr14_-_73725546_73725555	0.0399596	bHLH_family.p2	M26391|Rb1|19645|retinoblastoma 1
mm9_v1_chr2_-_9970235_9970261	0.039953	bHLH_family.p2	NM_027748|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK154372|Taf3|209361|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr4_+_154441131_154441172	0.0399472	bHLH_family.p2	NM_001042407|Pex10|668173|peroxisomal biogenesis factor 10	BC147304|Pex10|668173|peroxisomal biogenesis factor 10	BC147305|Pex10|668173|peroxisomal biogenesis factor 10	AK043682|Pex10|668173|peroxisomal biogenesis factor 10
mm9_v1_chr3_+_65761643_65761679	0.0398825	bHLH_family.p2	
mm9_v1_chr11_-_120012603_120012679	0.0397762	bHLH_family.p2	AK159948|Slc38a10|72055|solute carrier family 38, member 10	AK165672|Slc38a10|72055|solute carrier family 38, member 10	BC082300|Slc38a10|72055|solute carrier family 38, member 10	AK090050|Slc38a10|72055|solute carrier family 38, member 10	NM_001164798|Slc38a10|72055|solute carrier family 38, member 10	NM_001164799|Slc38a10|72055|solute carrier family 38, member 10	NM_001164800|Slc38a10|72055|solute carrier family 38, member 10	NM_001164801|Slc38a10|72055|solute carrier family 38, member 10	NM_001164802|Slc38a10|72055|solute carrier family 38, member 10	NM_024249|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr19_+_28909559_28909655	0.0397182	bHLH_family.p2	AK018188|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK045632|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK051428|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK083097|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC065099|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC064797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	D43797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	NM_009199|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	U73521|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm9_v1_chr11_+_70265405_70265432	0.0396988	bHLH_family.p2	AK008153|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)	BC025057|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)	NM_025397|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)
mm9_v1_chr5_+_53132801_53132856	0.0396796	bHLH_family.p2	NM_025951|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	NM_028744|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK035523|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK170730|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK016754|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AY148879|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK011751|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta
mm9_v1_chr1_+_159436875_159436945	0.0396483	bHLH_family.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr7_+_63023547_63023630	0.0396479	bHLH_family.p2	AK139362|Siglech|233274|sialic acid binding Ig-like lectin H	NM_178706|Siglech|233274|sialic acid binding Ig-like lectin H	AK080658|Siglech|233274|sialic acid binding Ig-like lectin H	AK032377|Siglech|233274|sialic acid binding Ig-like lectin H	DQ208935|Siglech|233274|sialic acid binding Ig-like lectin H	BC120501|Siglech|233274|sialic acid binding Ig-like lectin H	BC144741|Siglech|233274|sialic acid binding Ig-like lectin H	BC144742|Siglech|233274|sialic acid binding Ig-like lectin H	BC144743|Siglech|233274|sialic acid binding Ig-like lectin H	BC098229|Siglech|233274|sialic acid binding Ig-like lectin H	AK045719|Siglech|233274|sialic acid binding Ig-like lectin H	AK047813|Siglech|233274|sialic acid binding Ig-like lectin H	DQ157764|Siglech|233274|sialic acid binding Ig-like lectin H
mm9_v1_chr15_+_76157816_76157892	0.0395835	bHLH_family.p2	AK089890|Exosc4|109075|exosome component 4	NM_175399|Exosc4|109075|exosome component 4	AK167629|Exosc4|109075|exosome component 4	AK083308|Exosc4|109075|exosome component 4	BC012277|Exosc4|109075|exosome component 4
mm9_v1_chr12_+_87165889_87165903	0.0394577	bHLH_family.p2	NM_001081423|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr1_-_75216367_75216424	0.0393771	bHLH_family.p2	K03466|Tuba4a|22145|tubulin, alpha 4A
mm9_v1_chr9_-_114843103_114843123	0.039328	bHLH_family.p2	NM_175380|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr5_-_116102983_116102996	0.0393197	bHLH_family.p2	AK170295|Ccdc64|75665|coiled-coil domain containing 64
mm9_v1_chrX_-_47150892_47150921	0.0392759	bHLH_family.p2	AK030452|Igsf1|209268|immunoglobulin superfamily, member 1	BC089474|Igsf1|209268|immunoglobulin superfamily, member 1	AY227771|Igsf1|209268|immunoglobulin superfamily, member 1	AY227772|Igsf1|209268|immunoglobulin superfamily, member 1	BC100420|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177591|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177915|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chr8_+_86671936_86672150	0.03915	bHLH_family.p2	NM_001163752|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	NM_029045|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	AK172075|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	BC075658|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene	AK015293|4930432K21Rik|74666|RIKEN cDNA 4930432K21 gene
mm9_v1_chr2_-_6244125_6244167	0.0389938	bHLH_family.p2	AK005972|1700014B07Rik|72248|RIKEN cDNA 1700014B07 gene
mm9_v1_chrX_+_70656434_70656441	0.0389734	bHLH_family.p2	U47104|Zfp92|22754|zinc finger protein 92	AK141522|Zfp92|22754|zinc finger protein 92	NM_009566|Zfp92|22754|zinc finger protein 92
mm9_v1_chr7_+_19589395_19589469	0.0388449	bHLH_family.p2	AK087457|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	AK031834|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	BC036162|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	NM_178757|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	AK032010|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1
mm9_v1_chr2_-_25978328_25978339	0.0388151	bHLH_family.p2	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr8_+_75285778_75285801	0.0384583	bHLH_family.p2	AK036427|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	AK156729|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	NM_007975|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	BC119461|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	AK153720|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	AF080215|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3
mm9_v1_chr8_+_59029896_59029998	0.0384178	bHLH_family.p2	AK077595|Fbxo8|50753|F-box protein 8	AK078111|Fbxo8|50753|F-box protein 8	AK012401|Fbxo8|50753|F-box protein 8	AK147748|Fbxo8|50753|F-box protein 8	AK162592|Fbxo8|50753|F-box protein 8	AK002538|Fbxo8|50753|F-box protein 8	BC011100|Fbxo8|50753|F-box protein 8	AF176527|Fbxo8|50753|F-box protein 8	AK029989|Fbxo8|50753|F-box protein 8	NM_015791|Fbxo8|50753|F-box protein 8	AK160145|Fbxo8|50753|F-box protein 8	BC034854|Fbxo8|50753|F-box protein 8
mm9_v1_chr7_+_107641853_107641862	0.0383232	bHLH_family.p2	NM_011671|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr7_+_134732211_134732297	0.038303	bHLH_family.p2	NM_172281|Rnf40|233900|ring finger protein 40	AK089805|Rnf40|233900|ring finger protein 40	AK154982|Rnf40|233900|ring finger protein 40	AK171462|Rnf40|233900|ring finger protein 40	AK129184|Rnf40|233900|ring finger protein 40	BC038348|Rnf40|233900|ring finger protein 40
mm9_v1_chr8_+_11556679_11556909	0.0382376	bHLH_family.p2	BC147770|Ing1|26356|inhibitor of growth family, member 1	BC147784|Ing1|26356|inhibitor of growth family, member 1	AB221554|Ing1|26356|inhibitor of growth family, member 1	AF149820|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr11_-_45768976_45768987	0.0381656	bHLH_family.p2	BC092541|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	AK017532|Thg1l|66628|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm9_v1_chr6_-_124761078_124761358	0.0380035	bHLH_family.p2	AK216486|Tpi1|21991|triosephosphate isomerase 1	AK201708|Tpi1|21991|triosephosphate isomerase 1	AK191907|Tpi1|21991|triosephosphate isomerase 1	AK191323|Tpi1|21991|triosephosphate isomerase 1	AK190112|Tpi1|21991|triosephosphate isomerase 1	AK204501|Tpi1|21991|triosephosphate isomerase 1
mm9_v1_chr15_+_75824198_75824279	0.037755	bHLH_family.p2	BC048082|Mapk15|332110|mitogen-activated protein kinase 15	NM_177922|Mapk15|332110|mitogen-activated protein kinase 15
mm9_v1_chr11_+_34934956_34934982	0.0377383	bHLH_family.p2	NM_011412|Slit3|20564|slit homolog 3 (Drosophila)	AK147292|Slit3|20564|slit homolog 3 (Drosophila)	BC150780|Slit3|20564|slit homolog 3 (Drosophila)
mm9_v1_chr16_-_91647216_91647232	0.0374549	bHLH_family.p2	NM_010256|Gart|14450|phosphoribosylglycinamide formyltransferase
mm9_v1_chr9_+_53619341_53619344	0.0374037	bHLH_family.p2	NM_028060|Slc35f2|72022|solute carrier family 35, member F2	BC055843|Slc35f2|72022|solute carrier family 35, member F2
mm9_v1_chr1_-_36200401_36200606	0.0373192	bHLH_family.p2	AK044321|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1
mm9_v1_chr12_-_71328615_71328621	0.0372687	bHLH_family.p2	AK041189|Pygl|110095|liver glycogen phosphorylase	AK140321|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr11_+_68505416_68505481	0.0371478	bHLH_family.p2	NM_175260|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr8_+_28153013_28153055	0.0369321	bHLH_family.p2	NM_001039077|Prosc|114863|proline synthetase co-transcribed	NM_001039078|Prosc|114863|proline synthetase co-transcribed	NM_054057|Prosc|114863|proline synthetase co-transcribed	BC061045|Prosc|114863|proline synthetase co-transcribed	AK147670|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr15_-_36724292_36724292	0.0368066	bHLH_family.p2	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr5_-_115750649_115750671	0.0366858	bHLH_family.p2	BC085492|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr2_+_18594027_18594125	0.0366417	bHLH_family.p2	AK145999|Commd3|12238|COMM domain containing 3	AK145955|Commd3|12238|COMM domain containing 3	BC038077|Commd3|12238|COMM domain containing 3	BC048815|Commd3|12238|COMM domain containing 3	AK007318|Commd3|12238|COMM domain containing 3	AK041634|Commd3|12238|COMM domain containing 3	NM_147778|Commd3|12238|COMM domain containing 3
mm9_v1_chr11_-_5965544_5965554	0.0364044	bHLH_family.p2	BC080273|Camk2b|12323|calcium/calmodulin-dependent protein kinase II, beta
mm9_v1_chr11_+_114529837_114529938	0.0363619	bHLH_family.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr5_-_135539929_135539990	0.0362464	bHLH_family.p2	BC093484|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AF412035|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK003386|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK011005|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK151986|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	NM_025375|Wbscr22|66138|Williams Beuren syndrome chromosome region 22
mm9_v1_chr11_+_120645560_120645605	0.0360642	bHLH_family.p2	NM_001177874|Gps1|209318|G protein pathway suppressor 1	AK088490|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr10_-_62041134_62041209	0.0359989	bHLH_family.p2	AK149629|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK003009|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK158730|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC055307|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC090974|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC046485|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK161007|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK129320|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK035659|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK141324|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	NM_028197|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene
mm9_v1_chr2_-_142727172_142727216	0.0359771	bHLH_family.p2	NM_001081133|Kif16b|16558|kinesin family member 16B
mm9_v1_chr16_-_8425201_8425228	0.0358651	bHLH_family.p2	BC027071|Tmem114|74720|transmembrane protein 114	AK015757|Tmem114|74720|transmembrane protein 114	NM_029070|Tmem114|74720|transmembrane protein 114
mm9_v1_chr2_+_132089069_132089080	0.0358413	bHLH_family.p2	BC059776|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm9_v1_chr4_-_153674160_153674163	0.0356	bHLH_family.p2	AK153708|Arhgef16|230972|Rho guanine nucleotide exchange factor (GEF) 16
mm9_v1_chr6_+_66986592_66986609	0.0354914	bHLH_family.p2	AK029473|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr17_+_47641999_47642189	0.0353741	bHLH_family.p2	NM_001081635|Ccnd3|12445|cyclin D3	NM_001081636|Ccnd3|12445|cyclin D3	AK161758|Ccnd3|12445|cyclin D3	AK083384|Ccnd3|12445|cyclin D3	AK020317|Ccnd3|12445|cyclin D3
mm9_v1_chr2_+_162759398_162759483	0.035361	bHLH_family.p2	AK185344|Srsf6|67996|serine/arginine-rich splicing factor 6	AK208133|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr5_-_149771253_149771279	0.0353259	bHLH_family.p2	AK144510|1810059H22Rik|69820|RIKEN cDNA 1810059H22 gene	AK007907|1810059H22Rik|69820|RIKEN cDNA 1810059H22 gene
mm9_v1_chr17_-_26338106_26338229	0.0351998	bHLH_family.p2	L42463|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	U73198|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	AK144321|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	BC158003|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr11_+_32105414_32105503	0.0351904	bHLH_family.p2	AK019452|Snrnp25|78372|small nuclear ribonucleoprotein 25 (U11/U12)	NM_030093|Snrnp25|78372|small nuclear ribonucleoprotein 25 (U11/U12)	BC028766|Snrnp25|78372|small nuclear ribonucleoprotein 25 (U11/U12)
mm9_v1_chr18_+_21119972_21120137	0.0351379	bHLH_family.p2	AK016103|Rnf125|67664|ring finger protein 125	AB259692|Rnf125|67664|ring finger protein 125
mm9_v1_chr15_+_99236350_99236367	0.0350681	bHLH_family.p2	AK206236|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr16_+_44724394_44724433	0.0350512	bHLH_family.p2	NM_145972|BC027231|212547|cDNA sequence BC027231	BC027231|BC027231|212547|cDNA sequence BC027231	AK144612|BC027231|212547|cDNA sequence BC027231
mm9_v1_chr4_-_149072755_149072816	0.035033	bHLH_family.p2	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr18_-_38410131_38410218	0.0350261	bHLH_family.p2	AK039796|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene
mm9_v1_chr2_+_132088957_132088969	0.0349884	bHLH_family.p2	AY159802|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm9_v1_chr17_-_24670527_24670832	0.0349156	bHLH_family.p2	AB232621|Rab26|328778|RAB26, member RAS oncogene family	BC094931|Rab26|328778|RAB26, member RAS oncogene family	AK043912|Rab26|328778|RAB26, member RAS oncogene family	AK080607|Rab26|328778|RAB26, member RAS oncogene family	NM_177375|Rab26|328778|RAB26, member RAS oncogene family	BC118018|Rab26|328778|RAB26, member RAS oncogene family
mm9_v1_chr1_+_172949069_172949110	0.0348074	bHLH_family.p2	BC027310|Fcgr4|246256|Fc receptor, IgG, low affinity IV	AK170920|Fcgr4|246256|Fc receptor, IgG, low affinity IV	AF499613|Fcgr4|246256|Fc receptor, IgG, low affinity IV	EU050648|Fcgr4|246256|Fc receptor, IgG, low affinity IV
mm9_v1_chrX_+_70961935_70962047	0.0347796	bHLH_family.p2	NM_007435|Abcd1|11666|ATP-binding cassette, sub-family D (ALD), member 1	Z33637|Abcd1|11666|ATP-binding cassette, sub-family D (ALD), member 1	BC079840|Abcd1|11666|ATP-binding cassette, sub-family D (ALD), member 1
mm9_v1_chr10_-_77647837_77647908	0.0344707	bHLH_family.p2	AB041855|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	BC112325|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	BC117903|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	BC128480|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	AK088254|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	AK088983|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)	NM_029546|Pwp2|110816|PWP2 periodic tryptophan protein homolog (yeast)
mm9_v1_chr17_-_34880784_34880841	0.0344343	bHLH_family.p2	BC158005|C4b|12268|complement component 4B (Childo blood group)	BC150743|C4b|12268|complement component 4B (Childo blood group)	BC039141|C4b|12268|complement component 4B (Childo blood group)	BC067394|C4b|12268|complement component 4B (Childo blood group)	BC067409|C4b|12268|complement component 4B (Childo blood group)	BC055297|C4b|12268|complement component 4B (Childo blood group)	AK172637|C4b|12268|complement component 4B (Childo blood group)	AK157954|C4b|12268|complement component 4B (Childo blood group)	AK158256|C4b|12268|complement component 4B (Childo blood group)	AK158475|C4b|12268|complement component 4B (Childo blood group)	AK171644|C4b|12268|complement component 4B (Childo blood group)	M11729|C4b|12268|complement component 4B (Childo blood group)	NM_009780|C4b|12268|complement component 4B (Childo blood group)
mm9_v1_chr15_+_55139304_55139473	0.0343946	bHLH_family.p2	AK017553|Col14a1|12818|collagen, type XIV, alpha 1	NM_181277|Col14a1|12818|collagen, type XIV, alpha 1	AY221110|Col14a1|12818|collagen, type XIV, alpha 1	BC138345|Col14a1|12818|collagen, type XIV, alpha 1	BC145244|Col14a1|12818|collagen, type XIV, alpha 1
mm9_v1_chr19_+_5425119_5425264	0.0343845	bHLH_family.p2	NM_134149|AI837181|107242|expressed sequence AI837181	BC024516|AI837181|107242|expressed sequence AI837181	BC017542|AI837181|107242|expressed sequence AI837181	U64690|AI837181|107242|expressed sequence AI837181
mm9_v1_chr7_+_148153974_148154146	0.0343801	bHLH_family.p2	NM_001112715|Ifitm1|68713|interferon induced transmembrane protein 1	BC090972|Ifitm1|68713|interferon induced transmembrane protein 1	AK004121|Ifitm1|68713|interferon induced transmembrane protein 1	AK169960|Ifitm1|68713|interferon induced transmembrane protein 1	BC090258|Ifitm1|68713|interferon induced transmembrane protein 1
mm9_v1_chr6_-_128309288_128309372	0.0343108	bHLH_family.p2	
mm9_v1_chr18_+_11998043_11998097	0.034266	bHLH_family.p2	AK158396|Cables1|63955|CDK5 and Abl enzyme substrate 1	AF328140|Cables1|63955|CDK5 and Abl enzyme substrate 1
mm9_v1_chr13_-_114453813_114453883	0.033987	bHLH_family.p2	BC092376|Hspb3|56534|heat shock protein 3	AF203375|Hspb3|56534|heat shock protein 3	BC065388|Hspb3|56534|heat shock protein 3	AK009633|Hspb3|56534|heat shock protein 3	NM_019960|Hspb3|56534|heat shock protein 3
mm9_v1_chr9_-_55983967_55984081	0.033949	bHLH_family.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr1_-_78440233_78440311	0.0339209	bHLH_family.p2	AK185465|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit
mm9_v1_chr7_+_58877199_58877199	0.0336027	bHLH_family.p2	NM_080853|Slc17a6|140919|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm9_v1_chr14_-_49686341_49686379	0.0335408	bHLH_family.p2	NM_207214|Exoc5|105504|exocyst complex component 5
mm9_v1_chr15_-_102501463_102501513	0.0335195	bHLH_family.p2	BC081437|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK002311|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK012279|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK007747|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK075793|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	NM_026468|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
mm9_v1_chr18_-_36838775_36838784	0.0335096	bHLH_family.p2	BC024136|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr10_-_83989221_83989289	0.0334981	bHLH_family.p2	AK205593|Ckap4|216197|cytoskeleton-associated protein 4	AK212843|Ckap4|216197|cytoskeleton-associated protein 4	AK217343|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr16_-_8738377_8738512	0.0334394	bHLH_family.p2	AF548565|Usp7|252870|ubiquitin specific peptidase 7	NM_001003918|Usp7|252870|ubiquitin specific peptidase 7	BC046963|Usp7|252870|ubiquitin specific peptidase 7
mm9_v1_chr16_+_22009551_22009592	0.0333241	bHLH_family.p2	NM_029457|Senp2|75826|SUMO/sentrin specific peptidase 2	AK031030|Senp2|75826|SUMO/sentrin specific peptidase 2	AK015987|Senp2|75826|SUMO/sentrin specific peptidase 2	BC031652|Senp2|75826|SUMO/sentrin specific peptidase 2	AF368904|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr5_+_125935187_125935312	0.0331279	bHLH_family.p2	
mm9_v1_chr12_+_111976198_111976210	0.0330435	bHLH_family.p2	AK136417|Wdr20a|69641|WD repeat domain 20A	BC064773|Wdr20a|69641|WD repeat domain 20A
mm9_v1_chr12_-_4483975_4484031	0.0330109	bHLH_family.p2	U64828|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr19_-_5488150_5488373	0.0329294	bHLH_family.p2	AF425647|Mus81|71711|MUS81 endonuclease homolog (yeast)	AK145858|Mus81|71711|MUS81 endonuclease homolog (yeast)	AK168514|Mus81|71711|MUS81 endonuclease homolog (yeast)	NM_027877|Mus81|71711|MUS81 endonuclease homolog (yeast)	BC026560|Mus81|71711|MUS81 endonuclease homolog (yeast)
mm9_v1_chr7_+_56214442_56214485	0.0328321	bHLH_family.p2	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr11_+_6315729_6315787	0.0327093	bHLH_family.p2	AK151583|Ppia|268373|peptidylprolyl isomerase A
mm9_v1_chr11_-_100259048_100259060	0.0326704	bHLH_family.p2	BC040757|Jup|16480|junction plakoglobin	NM_010593|Jup|16480|junction plakoglobin	BC094461|Jup|16480|junction plakoglobin
mm9_v1_chrX_+_68303282_68303430	0.0325605	bHLH_family.p2	AK090190|Mamld1|333639|mastermind-like domain containing 1	NM_001081354|Mamld1|333639|mastermind-like domain containing 1
mm9_v1_chr13_+_21271760_21271827	0.0325258	bHLH_family.p2	AK049314|Trim27|19720|tripartite motif-containing 27	NM_009054|Trim27|19720|tripartite motif-containing 27
mm9_v1_chr18_-_25637786_25637794	0.0325057	bHLH_family.p2	AK078071|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr4_+_32744074_32744093	0.0319495	bHLH_family.p2	AK144722|Mdn1|100019|midasin homolog (yeast)	NM_001081392|Mdn1|100019|midasin homolog (yeast)
mm9_v1_chr7_+_52151432_52151509	0.0319335	bHLH_family.p2	NM_027376|Fuz|70300|fuzzy homolog (Drosophila)	AK134650|Fuz|70300|fuzzy homolog (Drosophila)	AK168939|Fuz|70300|fuzzy homolog (Drosophila)	AK045745|Fuz|70300|fuzzy homolog (Drosophila)	AK033247|Fuz|70300|fuzzy homolog (Drosophila)	BC045601|Fuz|70300|fuzzy homolog (Drosophila)	AK011195|Fuz|70300|fuzzy homolog (Drosophila)
mm9_v1_chr19_+_8913817_8913862	0.031906	bHLH_family.p2	AK158901|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	NM_008144|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	BC060048|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr17_+_11033219_11033335	0.0318946	bHLH_family.p2	AF250293|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	AF250294|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	AF250295|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	NM_016694|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	AK137478|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	BC113204|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	AB019558|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	FJ555555|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	FJ555556|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	FJ555557|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	GU272056|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin	FJ555554|Park2|50873|Parkinson disease (autosomal recessive, juvenile) 2, parkin
mm9_v1_chr11_-_96691261_96691289	0.0318329	bHLH_family.p2	AK152040|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK153529|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_008686|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr1_+_87804881_87804999	0.0318063	bHLH_family.p2	AK195066|Itm2c|64294|integral membrane protein 2C	AK181068|Itm2c|64294|integral membrane protein 2C	AK184077|Itm2c|64294|integral membrane protein 2C	AK184543|Itm2c|64294|integral membrane protein 2C	AK184789|Itm2c|64294|integral membrane protein 2C	AK185815|Itm2c|64294|integral membrane protein 2C	AK187837|Itm2c|64294|integral membrane protein 2C	AK202316|Itm2c|64294|integral membrane protein 2C	AK208625|Itm2c|64294|integral membrane protein 2C	AK210908|Itm2c|64294|integral membrane protein 2C	AK214441|Itm2c|64294|integral membrane protein 2C	AK214627|Itm2c|64294|integral membrane protein 2C	AK188840|Itm2c|64294|integral membrane protein 2C	AK215527|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr2_+_26442112_26442158	0.0317432	bHLH_family.p2	NM_001164564|Egfl7|353156|EGF-like domain 7	AK139377|Egfl7|353156|EGF-like domain 7
mm9_v1_chr6_-_6167113_6167172	0.0316503	bHLH_family.p2	AK151180|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK152237|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AF164632|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK150496|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_001177572|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_015829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr9_+_85739048_85739158	0.0316205	bHLH_family.p2	AK050794|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr4_+_155336456_155336496	0.0315574	bHLH_family.p2	BC026939|Fam132a|67389|family with sequence similarity 132, member A
mm9_v1_chr10_+_83185609_83185706	0.0314574	bHLH_family.p2	BC048550|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	NM_001145198|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK012407|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK005183|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene
mm9_v1_chr11_-_50244605_50244617	0.0314132	bHLH_family.p2	AK046633|Rufy1|216724|RUN and FYVE domain containing 1	NM_172557|Rufy1|216724|RUN and FYVE domain containing 1	AK051178|Rufy1|216724|RUN and FYVE domain containing 1
mm9_v1_chr17_+_34176412_34176421	0.0313976	bHLH_family.p2	D38412|Col11a2|12815|collagen, type XI, alpha 2
mm9_v1_chr3_-_108236057_108236062	0.0313677	bHLH_family.p2	AK181805|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK190309|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK217331|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK219731|Sars|20226|seryl-aminoacyl-tRNA synthetase
mm9_v1_chr1_-_95518831_95518886	0.0312916	bHLH_family.p2	AK211456|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr11_-_97011324_97011437	0.0312528	bHLH_family.p2	AK014173|Tbkbp1|73174|TBK1 binding protein 1
mm9_v1_chr2_+_118214394_118214397	0.0311918	bHLH_family.p2	AK013758|Eif2ak4|27103|eukaryotic translation initiation factor 2 alpha kinase 4
mm9_v1_chr5_-_124545776_124545806	0.0311317	bHLH_family.p2	AK044140|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AB093298|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	BC026455|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AF216495|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	NM_019875|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr4_+_148178500_148178594	0.0308144	bHLH_family.p2	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr2_-_6051177_6051230	0.0306079	bHLH_family.p2	AK132370|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	BC025867|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	BC029968|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	AK077380|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	NM_001159657|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene	NM_144883|5430407P10Rik|227545|RIKEN cDNA 5430407P10 gene
mm9_v1_chr9_-_107996781_107996821	0.0305512	bHLH_family.p2	BC025494|Apeh|235606|acylpeptide hydrolase	BC005716|Apeh|235606|acylpeptide hydrolase	AK041271|Apeh|235606|acylpeptide hydrolase	AK149671|Apeh|235606|acylpeptide hydrolase	AK149713|Apeh|235606|acylpeptide hydrolase	NM_146226|Apeh|235606|acylpeptide hydrolase
mm9_v1_chr8_+_34807688_34807718	0.0304967	bHLH_family.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr17_-_56416148_56416230	0.0303964	bHLH_family.p2	AK054219|Ticam1|106759|toll-like receptor adaptor molecule 1	AK089679|Ticam1|106759|toll-like receptor adaptor molecule 1	AK083836|Ticam1|106759|toll-like receptor adaptor molecule 1	AK086237|Ticam1|106759|toll-like receptor adaptor molecule 1	BC037048|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155906|Ticam1|106759|toll-like receptor adaptor molecule 1	AK171578|Ticam1|106759|toll-like receptor adaptor molecule 1	AK143766|Ticam1|106759|toll-like receptor adaptor molecule 1	AK150150|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155245|Ticam1|106759|toll-like receptor adaptor molecule 1	NM_174989|Ticam1|106759|toll-like receptor adaptor molecule 1
mm9_v1_chr5_-_143656888_143656920	0.0301859	bHLH_family.p2	BC115599|Fbxl18|231863|F-box and leucine-rich repeat protein 18	BC139739|Fbxl18|231863|F-box and leucine-rich repeat protein 18	AK154354|Fbxl18|231863|F-box and leucine-rich repeat protein 18	AK144757|Fbxl18|231863|F-box and leucine-rich repeat protein 18	NM_001033312|Fbxl18|231863|F-box and leucine-rich repeat protein 18
mm9_v1_chr16_+_22009607_22009725	0.0298888	bHLH_family.p2	AY188288|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr14_-_11285927_11285966	0.0297961	bHLH_family.p2	BC012662|Fhit|14198|fragile histidine triad gene
mm9_v1_chr9_-_106794158_106794229	0.0296653	bHLH_family.p2	AK176996|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr19_-_11893333_11893421	0.0295296	bHLH_family.p2	D29799|Stx3|20908|syntaxin 3	NM_011502|Stx3|20908|syntaxin 3	AK038415|Stx3|20908|syntaxin 3	AK133830|Stx3|20908|syntaxin 3
mm9_v1_chr2_+_24831548_24831624	0.029522	bHLH_family.p2	NM_146251|Pnpla7|241274|patatin-like phospholipase domain containing 7	AK148380|Pnpla7|241274|patatin-like phospholipase domain containing 7	AK088362|Pnpla7|241274|patatin-like phospholipase domain containing 7	AK170417|Pnpla7|241274|patatin-like phospholipase domain containing 7	BC021312|Pnpla7|241274|patatin-like phospholipase domain containing 7
mm9_v1_chr9_+_122930421_122930484	0.0293322	bHLH_family.p2	BC049583|Tmem42|66079|transmembrane protein 42	NM_001164823|Tmem42|66079|transmembrane protein 42	NM_025339|Tmem42|66079|transmembrane protein 42	AK002688|Tmem42|66079|transmembrane protein 42	AK012820|Tmem42|66079|transmembrane protein 42
mm9_v1_chr11_-_68635236_68635451	0.0293284	bHLH_family.p2	AK194070|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr13_+_100894802_100894858	0.0292207	bHLH_family.p2	NM_011420|Smn1|20595|survival motor neuron 1	AK144778|Smn1|20595|survival motor neuron 1	AK167832|Smn1|20595|survival motor neuron 1	Y12835|Smn1|20595|survival motor neuron 1	U63294|Smn1|20595|survival motor neuron 1	AK152495|Smn1|20595|survival motor neuron 1	AK012698|Smn1|20595|survival motor neuron 1	BC045158|Smn1|20595|survival motor neuron 1	AY821785|Smn1|20595|survival motor neuron 1	AY821786|Smn1|20595|survival motor neuron 1	AY821787|Smn1|20595|survival motor neuron 1	U77714|Smn1|20595|survival motor neuron 1
mm9_v1_chr18_-_61371010_61371141	0.0288843	bHLH_family.p2	AK007212|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2	BC028345|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2	D42049|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2	AK163974|Slc26a2|13521|solute carrier family 26 (sulfate transporter), member 2
mm9_v1_chr11_+_110260435_110260577	0.0287057	bHLH_family.p2	AK043482|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK086722|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK138757|Map2k6|26399|mitogen-activated protein kinase kinase 6	NM_011943|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK077712|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK140289|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK141708|Map2k6|26399|mitogen-activated protein kinase kinase 6	BC075652|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK162671|Map2k6|26399|mitogen-activated protein kinase kinase 6	X97052|Map2k6|26399|mitogen-activated protein kinase kinase 6
mm9_v1_chr10_-_13194201_13194201	0.0284696	bHLH_family.p2	BC012871|Phactr2|215789|phosphatase and actin regulator 2	NM_001195065|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr4_+_129784799_129784867	0.0283522	bHLH_family.p2	AK075978|Pef1|67898|penta-EF hand domain containing 1	NM_026441|Pef1|67898|penta-EF hand domain containing 1	AK007394|Pef1|67898|penta-EF hand domain containing 1	AK013238|Pef1|67898|penta-EF hand domain containing 1	AK046247|Pef1|67898|penta-EF hand domain containing 1	BC019191|Pef1|67898|penta-EF hand domain containing 1
mm9_v1_chr1_+_196802566_196802578	0.0282909	bHLH_family.p2	AK039326|A330023F24Rik|320977|RIKEN cDNA A330023F24 gene	AK171382|A330023F24Rik|320977|RIKEN cDNA A330023F24 gene
mm9_v1_chr11_-_102266342_102266375	0.0282669	bHLH_family.p2	AK211485|Slc25a39|68066|solute carrier family 25, member 39
mm9_v1_chr11_+_106649938_106649986	0.0280205	bHLH_family.p2	AK089185|Ccdc45|320162|coiled-coil domain containing 45	AK084665|Ccdc45|320162|coiled-coil domain containing 45
mm9_v1_chr15_-_97923632_97923835	0.0279774	bHLH_family.p2	AK028565|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK088597|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK138013|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK035581|Senp1|223870|SUMO1/sentrin specific peptidase 1	NM_144851|Senp1|223870|SUMO1/sentrin specific peptidase 1
mm9_v1_chr5_+_96803224_96803224	0.027948	bHLH_family.p2	AK043422|Fras1|231470|Fraser syndrome 1 homolog (human)
mm9_v1_chr6_-_99470989_99471155	0.0278892	bHLH_family.p2	
mm9_v1_chr5_+_125956283_125956442	0.0278514	bHLH_family.p2	AB054122|Aacs|78894|acetoacetyl-CoA synthetase	AK034184|Aacs|78894|acetoacetyl-CoA synthetase	AB056114|Aacs|78894|acetoacetyl-CoA synthetase	AK206715|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr10_+_78037712_78037795	0.0278272	bHLH_family.p2	AK133553|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK146075|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK169899|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK143918|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like	AK087956|Ilvbl|216136|ilvB (bacterial acetolactate synthase)-like
mm9_v1_chr1_-_72747112_72747152	0.0276554	bHLH_family.p2	BC132415|Ankar|319695|ankyrin and armadillo repeat containing	BC145253|Ankar|319695|ankyrin and armadillo repeat containing	AK030065|Ankar|319695|ankyrin and armadillo repeat containing	NM_176980|Ankar|319695|ankyrin and armadillo repeat containing	AK077036|Ankar|319695|ankyrin and armadillo repeat containing
mm9_v1_chr14_-_22668093_22668141	0.0276399	bHLH_family.p2	CT010388|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC019467|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC049670|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK007659|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK054334|Comtd1|69156|catechol-O-methyltransferase domain containing 1	NM_026965|Comtd1|69156|catechol-O-methyltransferase domain containing 1
mm9_v1_chr7_+_134890288_134890288	0.0274406	bHLH_family.p2	BC059812|Fbxl19|233902|F-box and leucine-rich repeat protein 19	NM_172748|Fbxl19|233902|F-box and leucine-rich repeat protein 19
mm9_v1_chr6_+_17257720_17257722	0.0274158	bHLH_family.p2	AB029930|Cav1|12389|caveolin 1, caveolae protein	AK090074|Cav1|12389|caveolin 1, caveolae protein
mm9_v1_chr5_-_115722812_115722858	0.027402	bHLH_family.p2	
mm9_v1_chr11_+_67466072_67466088	0.0273982	bHLH_family.p2	AF133184|Gas7|14457|growth arrest specific 7
mm9_v1_chr5_-_135096716_135096886	0.0272781	bHLH_family.p2	BC023337|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr9_+_51021793_51021824	0.0269852	bHLH_family.p2	Z54283|Pou2af1|18985|POU domain, class 2, associating factor 1	NM_011136|Pou2af1|18985|POU domain, class 2, associating factor 1	U43788|Pou2af1|18985|POU domain, class 2, associating factor 1	AK088587|Pou2af1|18985|POU domain, class 2, associating factor 1	AK135080|Pou2af1|18985|POU domain, class 2, associating factor 1	BC058611|Pou2af1|18985|POU domain, class 2, associating factor 1
mm9_v1_chr11_-_102080155_102080242	0.0267774	bHLH_family.p2	AK156008|Hdac5|15184|histone deacetylase 5	AK157159|Hdac5|15184|histone deacetylase 5
mm9_v1_chr11_-_65083442_65083498	0.0267577	bHLH_family.p2	AF384055|Myocd|214384|myocardin	AY303755|Myocd|214384|myocardin	NM_145136|Myocd|214384|myocardin	NM_146386|Myocd|214384|myocardin	AK142216|Myocd|214384|myocardin
mm9_v1_chr2_-_117168409_117168515	0.026638	bHLH_family.p2	AF106070|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr6_-_48791369_48791407	0.0266083	bHLH_family.p2	AK156042|Tmem176b|65963|transmembrane protein 176B	NM_001164207|Tmem176b|65963|transmembrane protein 176B	NM_001164208|Tmem176b|65963|transmembrane protein 176B
mm9_v1_chr7_+_13615892_13615926	0.0265088	bHLH_family.p2	AK193916|Trim28|21849|tripartite motif-containing 28	AK194102|Trim28|21849|tripartite motif-containing 28	AK190398|Trim28|21849|tripartite motif-containing 28	AK177374|Trim28|21849|tripartite motif-containing 28	AK189444|Trim28|21849|tripartite motif-containing 28	AK190056|Trim28|21849|tripartite motif-containing 28	AK190280|Trim28|21849|tripartite motif-containing 28	AK192048|Trim28|21849|tripartite motif-containing 28	AK196455|Trim28|21849|tripartite motif-containing 28	AK196856|Trim28|21849|tripartite motif-containing 28
mm9_v1_chr19_-_60019266_60019313	0.026416	bHLH_family.p2	AK154916|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001033172|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr15_-_82624638_82624663	0.0262616	bHLH_family.p2	BC023241|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr15_+_99239412_99239454	0.0260931	bHLH_family.p2	
mm9_v1_chr12_-_35213738_35213753	0.0259342	bHLH_family.p2	BC098187|Hdac9|79221|histone deacetylase 9	NM_024124|Hdac9|79221|histone deacetylase 9
mm9_v1_chr1_-_80210403_80210518	0.0258004	bHLH_family.p2	BC150872|Fam124b|241128|family with sequence similarity 124, member B	AK043867|Fam124b|241128|family with sequence similarity 124, member B	NM_173425|Fam124b|241128|family with sequence similarity 124, member B
mm9_v1_chr19_+_43764329_43764366	0.0257077	bHLH_family.p2	AK166220|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr1_-_55084269_55084299	0.0255472	bHLH_family.p2	AK012632|Sf3b1|81898|splicing factor 3b, subunit 1	BC037098|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr1_-_121545442_121545576	0.0253349	bHLH_family.p2	AK034676|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK047523|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK173198|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	BC011476|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044959|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044996|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK079301|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK161141|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK027983|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK037024|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK136125|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK040354|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK167449|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_001113416|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_145506|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5
mm9_v1_chr4_+_94405963_94405990	0.0252987	bHLH_family.p2	BC050824|Tek|21687|endothelial-specific receptor tyrosine kinase	D13738|Tek|21687|endothelial-specific receptor tyrosine kinase	NM_013690|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr11_+_8948594_8948715	0.0252699	bHLH_family.p2	NM_001037928|Gm11992|626870|predicted gene 11992	AK154909|Gm11992|626870|predicted gene 11992	AK160996|Gm11992|626870|predicted gene 11992	BC147253|Gm11992|626870|predicted gene 11992	BC147254|Gm11992|626870|predicted gene 11992
mm9_v1_chr16_-_84955488_84955582	0.025264	bHLH_family.p2	AK190067|App|11820|amyloid beta (A4) precursor protein	AK194558|App|11820|amyloid beta (A4) precursor protein	AK213784|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr18_-_38409826_38409853	0.0251126	bHLH_family.p2	AK050707|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene	AK078369|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene	AK007023|1700086O06Rik|73516|RIKEN cDNA 1700086O06 gene
mm9_v1_chr12_+_107022903_107023027	0.0250918	bHLH_family.p2	NM_011112|Papola|18789|poly (A) polymerase alpha	AK028940|Papola|18789|poly (A) polymerase alpha	AK090096|Papola|18789|poly (A) polymerase alpha	AK132704|Papola|18789|poly (A) polymerase alpha	AK134552|Papola|18789|poly (A) polymerase alpha	BC060128|Papola|18789|poly (A) polymerase alpha	U58134|Papola|18789|poly (A) polymerase alpha	U52197|Papola|18789|poly (A) polymerase alpha
mm9_v1_chr19_+_43764248_43764298	0.0250726	bHLH_family.p2	AK045130|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr7_-_52147628_52147748	0.0250001	bHLH_family.p2	AK209813|Med25|75613|mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)	AK089940|Med25|75613|mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)	NM_029365|Med25|75613|mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)
mm9_v1_chr1_-_64167574_64167617	0.0247825	bHLH_family.p2	AB221646|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr10_-_80464109_80464109	0.0247314	bHLH_family.p2	AK158963|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7	NM_001038655|Gng7|14708|guanine nucleotide binding protein (G protein), gamma 7
mm9_v1_chr11_-_60016324_60016387	0.0246939	bHLH_family.p2	
mm9_v1_chr11_+_102137867_102137884	0.024337	bHLH_family.p2	AK038411|Asb16|217217|ankyrin repeat and SOCS box-containing 16
mm9_v1_chr10_+_26492282_26492396	0.0243264	bHLH_family.p2	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr9_-_101101334_101101402	0.0241803	bHLH_family.p2	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr8_+_73890746_73890840	0.0241089	bHLH_family.p2	NM_001145780|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)	BC075695|Use1|67023|unconventional SNARE in the ER 1 homolog (S. cerevisiae)
mm9_v1_chr5_-_53604673_53604743	0.0239798	bHLH_family.p2	AK122362|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)	NM_172710|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr4_+_63219786_63219927	0.0239384	bHLH_family.p2	AK144990|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	AK030466|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	AK206525|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	AK161160|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene
mm9_v1_chr10_-_127325725_127325818	0.0238845	bHLH_family.p2	BC024603|Rdh7|54150|retinol dehydrogenase 7	AF056194|Rdh7|54150|retinol dehydrogenase 7	NM_017473|Rdh7|54150|retinol dehydrogenase 7	NM_001150749|Rdh7|54150|retinol dehydrogenase 7
mm9_v1_chrX_+_97969784_97969833	0.0236839	bHLH_family.p2	NM_001177779|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr9_-_24956142_24956144	0.0236725	bHLH_family.p2	AK043046|Herpud2|80517|HERPUD family member 2
mm9_v1_chr17_-_57074707_57074921	0.0235262	bHLH_family.p2	AF312858|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	BC053005|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	NM_022328|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	AK156820|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1	AK144605|Mllt1|64144|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm9_v1_chr2_-_91805686_91805756	0.0234932	bHLH_family.p2	AK170936|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr4_+_109079704_109079727	0.0234783	bHLH_family.p2	AK048659|Ttc39a|230603|tetratricopeptide repeat domain 39A	NM_153392|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK082733|Ttc39a|230603|tetratricopeptide repeat domain 39A	BC023883|Ttc39a|230603|tetratricopeptide repeat domain 39A
mm9_v1_chr7_-_28231535_28231646	0.0233836	bHLH_family.p2	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr1_-_145549758_145549813	0.0232863	bHLH_family.p2	BC031127|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	NM_145991|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr5_-_140302780_140302843	0.0232695	bHLH_family.p2	AK012616|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	BC058692|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	BC027410|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	NM_025604|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3	AK019558|Psmg3|66506|proteasome (prosome, macropain) assembly chaperone 3
mm9_v1_chr12_+_79849894_79849915	0.0230894	bHLH_family.p2	AK133187|Mpp5|56217|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	BC067404|Mpp5|56217|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm9_v1_chr2_+_25203630_25203665	0.0229515	bHLH_family.p2	BC025500|Man1b1|227619|mannosidase, alpha, class 1B, member 1
mm9_v1_chr2_-_102026486_102026616	0.0227895	bHLH_family.p2	AK032208|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	AK029683|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	NM_178886|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138178|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC145174|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138177|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3
mm9_v1_chr10_+_116387609_116387672	0.0227845	bHLH_family.p2	AK084517|4933412E12Rik|71086|RIKEN cDNA 4933412E12 gene	AK016788|4933412E12Rik|71086|RIKEN cDNA 4933412E12 gene
mm9_v1_chr7_+_51031646_51031698	0.0227671	bHLH_family.p2	AB016226|Klk11|56538|kallikrein related-peptidase 11	BC115518|Klk11|56538|kallikrein related-peptidase 11	BC148310|Klk11|56538|kallikrein related-peptidase 11	NM_019974|Klk11|56538|kallikrein related-peptidase 11
mm9_v1_chr3_+_135101248_135101271	0.0223764	bHLH_family.p2	AK167138|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK003163|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK009276|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK009936|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr3_+_52072251_52072295	0.022236	bHLH_family.p2	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr16_+_58670444_58670490	0.0220779	bHLH_family.p2	AK166512|Cpox|12892|coproporphyrinogen oxidase	BC017680|Cpox|12892|coproporphyrinogen oxidase
mm9_v1_chr15_+_12808445_12808493	0.0220481	bHLH_family.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr11_-_33893151_33893192	0.0218624	bHLH_family.p2	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr7_-_134417572_134417575	0.0218246	bHLH_family.p2	AK077573|Sephs2|20768|selenophosphate synthetase 2	AK168722|Sephs2|20768|selenophosphate synthetase 2	AK168965|Sephs2|20768|selenophosphate synthetase 2	NM_009266|Sephs2|20768|selenophosphate synthetase 2
mm9_v1_chr17_-_26005680_26005704	0.0216906	bHLH_family.p2	AK020614|Fam195a|68241|family with sequence similarity 195, member A	AK003564|Fam195a|68241|family with sequence similarity 195, member A	NM_026633|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr4_-_151851624_151851635	0.02169	bHLH_family.p2	AK143166|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr9_+_50561092_50561116	0.0216771	bHLH_family.p2	AK146556|Cryab|12955|crystallin, alpha B
mm9_v1_chr2_+_119177025_119177036	0.0215115	bHLH_family.p2	AK007378|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	BC025169|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr1_-_174563092_174563154	0.021503	bHLH_family.p2	AB183013|Dusp23|68440|dual specificity phosphatase 23	BC069187|Dusp23|68440|dual specificity phosphatase 23	NM_026725|Dusp23|68440|dual specificity phosphatase 23
mm9_v1_chr4_-_84320976_84320992	0.0214242	bHLH_family.p2	AK030323|Bnc2|242509|basonuclin 2	NM_172870|Bnc2|242509|basonuclin 2
mm9_v1_chrX_-_35988248_35988263	0.0213695	bHLH_family.p2	AK005118|C1galt1c1|59048|C1GALT1-specific chaperone 1	AK161729|C1galt1c1|59048|C1GALT1-specific chaperone 1	AK008040|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr7_-_150970404_150970404	0.0212822	bHLH_family.p2	AK133657|Mrgpre|244238|MAS-related GPR, member E	NM_175534|Mrgpre|244238|MAS-related GPR, member E
mm9_v1_chr1_-_34496516_34496516	0.021281	bHLH_family.p2	BC019430|Ccdc115|69668|coiled-coil domain containing 115	NM_027159|Ccdc115|69668|coiled-coil domain containing 115
mm9_v1_chr9_-_83003967_83004006	0.0212462	bHLH_family.p2	
mm9_v1_chr4_+_94406002_94406012	0.0211816	bHLH_family.p2	AK053336|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr6_-_122692407_122692520	0.0209026	bHLH_family.p2	CT010354|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	M75135|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	X61093|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	BC050095|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	AK155997|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	BC034122|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	BC058811|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr9_-_109986879_109987026	0.020873	bHLH_family.p2	AK193613|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr19_+_45101318_45101473	0.0208473	bHLH_family.p2	AK202462|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK203408|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK205448|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK210216|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK215584|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK215776|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK217660|Lzts2|226154|leucine zipper, putative tumor suppressor 2
mm9_v1_chr17_-_24647423_24647477	0.0207356	bHLH_family.p2	AK198829|Traf7|224619|TNF receptor-associated factor 7	AK200776|Traf7|224619|TNF receptor-associated factor 7
mm9_v1_chr2_+_35991917_35991917	0.0206862	bHLH_family.p2	NM_026422|Mrrf|67871|mitochondrial ribosome recycling factor
mm9_v1_chrX_-_101176600_101176631	0.0204996	bHLH_family.p2	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr2_-_164008333_164008477	0.0204051	bHLH_family.p2	AK075896|Wfdc5|209232|WAP four-disulfide core domain 5	AK131906|Wfdc5|209232|WAP four-disulfide core domain 5	AK131905|Wfdc5|209232|WAP four-disulfide core domain 5	AY669505|Wfdc5|209232|WAP four-disulfide core domain 5	BC019734|Wfdc5|209232|WAP four-disulfide core domain 5	NM_145369|Wfdc5|209232|WAP four-disulfide core domain 5
mm9_v1_chr2_+_36086059_36086082	0.0203298	bHLH_family.p2	AK134163|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AY547265|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	CT010314|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr3_+_107397948_107398023	0.0202855	bHLH_family.p2	NM_007441|Alx3|11694|aristaless-like homeobox 3	U96109|Alx3|11694|aristaless-like homeobox 3	AK142019|Alx3|11694|aristaless-like homeobox 3
mm9_v1_chr3_+_137286635_137286835	0.0202577	bHLH_family.p2	AK018944|Ddit4l|73284|DNA-damage-inducible transcript 4-like	NM_030143|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK006617|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AK053333|Ddit4l|73284|DNA-damage-inducible transcript 4-like	BC038131|Ddit4l|73284|DNA-damage-inducible transcript 4-like	AF335325|Ddit4l|73284|DNA-damage-inducible transcript 4-like
mm9_v1_chrX_-_43809499_43809524	0.0201964	bHLH_family.p2	NM_001085510|Gm4987|245405|predicted gene 4987
mm9_v1_chr10_+_59740430_59740512	0.0201047	bHLH_family.p2	AK159108|Psap|19156|prosaposin	AK148152|Psap|19156|prosaposin	S71616|Psap|19156|prosaposin	AK161313|Psap|19156|prosaposin	AK159457|Psap|19156|prosaposin	AK152819|Psap|19156|prosaposin	AK217017|Psap|19156|prosaposin	AK148150|Psap|19156|prosaposin	AK152319|Psap|19156|prosaposin	AK159221|Psap|19156|prosaposin	AK152408|Psap|19156|prosaposin	AK167198|Psap|19156|prosaposin	AK145607|Psap|19156|prosaposin	AK148545|Psap|19156|prosaposin	AK150331|Psap|19156|prosaposin	AK151234|Psap|19156|prosaposin	AK151525|Psap|19156|prosaposin	AK151529|Psap|19156|prosaposin	AK151852|Psap|19156|prosaposin	AK151907|Psap|19156|prosaposin	AK151943|Psap|19156|prosaposin	AK152134|Psap|19156|prosaposin	AK152505|Psap|19156|prosaposin	AK152557|Psap|19156|prosaposin	AK152605|Psap|19156|prosaposin	AK159414|Psap|19156|prosaposin	AK159589|Psap|19156|prosaposin	AK159728|Psap|19156|prosaposin	AK159862|Psap|19156|prosaposin	AK159936|Psap|19156|prosaposin	AK160019|Psap|19156|prosaposin	AK160049|Psap|19156|prosaposin	AK160877|Psap|19156|prosaposin	AK166879|Psap|19156|prosaposin	AK167099|Psap|19156|prosaposin	AK167252|Psap|19156|prosaposin	AK093881|Psap|19156|prosaposin	AK152355|Psap|19156|prosaposin	AK159333|Psap|19156|prosaposin	AK167418|Psap|19156|prosaposin	AK088369|Psap|19156|prosaposin	AK135637|Psap|19156|prosaposin	AK145802|Psap|19156|prosaposin	AK150645|Psap|19156|prosaposin	AK151034|Psap|19156|prosaposin	AK151230|Psap|19156|prosaposin	AK151251|Psap|19156|prosaposin	AK151875|Psap|19156|prosaposin	AK151891|Psap|19156|prosaposin	AK152126|Psap|19156|prosaposin	AK152280|Psap|19156|prosaposin	AK153404|Psap|19156|prosaposin	AK159164|Psap|19156|prosaposin	AK159167|Psap|19156|prosaposin	AK159198|Psap|19156|prosaposin	AK159244|Psap|19156|prosaposin	AK159266|Psap|19156|prosaposin	AK159341|Psap|19156|prosaposin	AK159384|Psap|19156|prosaposin	AK159451|Psap|19156|prosaposin	AK159487|Psap|19156|prosaposin	AK159492|Psap|19156|prosaposin	AK159510|Psap|19156|prosaposin	AK159528|Psap|19156|prosaposin	AK159530|Psap|19156|prosaposin	AK159604|Psap|19156|prosaposin	AK159634|Psap|19156|prosaposin	AK159638|Psap|19156|prosaposin	AK159657|Psap|19156|prosaposin	AK159664|Psap|19156|prosaposin	AK159685|Psap|19156|prosaposin	AK159692|Psap|19156|prosaposin	AK159709|Psap|19156|prosaposin	AK159720|Psap|19156|prosaposin	AK159840|Psap|19156|prosaposin	AK159861|Psap|19156|prosaposin	AK159877|Psap|19156|prosaposin	AK159910|Psap|19156|prosaposin	AK159915|Psap|19156|prosaposin	AK159982|Psap|19156|prosaposin	AK160015|Psap|19156|prosaposin	AK160021|Psap|19156|prosaposin	AK160024|Psap|19156|prosaposin	AK160046|Psap|19156|prosaposin	AK160073|Psap|19156|prosaposin	AK160108|Psap|19156|prosaposin	AK166700|Psap|19156|prosaposin	AK166707|Psap|19156|prosaposin	AK166811|Psap|19156|prosaposin	AK166849|Psap|19156|prosaposin	AK166909|Psap|19156|prosaposin	AK166920|Psap|19156|prosaposin	AK166946|Psap|19156|prosaposin	AK166959|Psap|19156|prosaposin	AK166984|Psap|19156|prosaposin	AK167014|Psap|19156|prosaposin	AK167025|Psap|19156|prosaposin	AK167073|Psap|19156|prosaposin	AK167108|Psap|19156|prosaposin	AK167111|Psap|19156|prosaposin	AK167147|Psap|19156|prosaposin	AK167213|Psap|19156|prosaposin	AK167237|Psap|19156|prosaposin	BC141089|Psap|19156|prosaposin	BC145359|Psap|19156|prosaposin	U27340|Psap|19156|prosaposin	AK089998|Psap|19156|prosaposin	AK151173|Psap|19156|prosaposin	AK152117|Psap|19156|prosaposin	AK159427|Psap|19156|prosaposin	AK159463|Psap|19156|prosaposin	AK159994|Psap|19156|prosaposin	AK166744|Psap|19156|prosaposin	AK167243|Psap|19156|prosaposin	AK167719|Psap|19156|prosaposin	AK170416|Psap|19156|prosaposin	AK159722|Psap|19156|prosaposin	S36200|Psap|19156|prosaposin
mm9_v1_chr1_-_135506760_135506767	0.0200754	bHLH_family.p2	X65704|Snrpe|20643|small nuclear ribonucleoprotein E
mm9_v1_chr14_+_121434765_121434823	0.0200115	bHLH_family.p2	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr1_-_82287067_82287145	0.0199599	bHLH_family.p2	L24563|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr1_-_23389950_23390192	0.0199087	bHLH_family.p2	NM_001081079|Ogfrl1|70155|opioid growth factor receptor-like 1
mm9_v1_chr11_-_64976408_64976473	0.0197655	bHLH_family.p2	BC056366|Arhgap44|216831|Rho GTPase activating protein 44	BC059911|Arhgap44|216831|Rho GTPase activating protein 44	NM_001099288|Arhgap44|216831|Rho GTPase activating protein 44	NM_175003|Arhgap44|216831|Rho GTPase activating protein 44
mm9_v1_chr2_-_26459777_26459815	0.0197143	bHLH_family.p2	BC125530|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	BC137840|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
mm9_v1_chr7_+_63097396_63097595	0.0197106	bHLH_family.p2	AK044651|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	NM_001164661|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	NM_001164662|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	NM_011370|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	BC052713|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr4_+_126850123_126850181	0.0197084	bHLH_family.p2	AK158868|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr4_-_125840501_125840584	0.0196905	bHLH_family.p2	BC019568|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	AK155132|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	NM_001162533|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene
mm9_v1_chr19_+_36484237_36484340	0.0196001	bHLH_family.p2	AK146133|Pcgf5|76073|polycomb group ring finger 5
mm9_v1_chr18_-_31476527_31476591	0.0195147	bHLH_family.p2	AK046484|Rit2|19762|Ras-like without CAAX 2	AK138206|Rit2|19762|Ras-like without CAAX 2
mm9_v1_chr9_+_58671214_58671318	0.0193034	bHLH_family.p2	BC158106|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4	BC158108|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4	NM_001081192|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4
mm9_v1_chr10_-_82085802_82085872	0.0192429	bHLH_family.p2	BC038652|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	BC065417|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	AK004515|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	AK045413|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene
mm9_v1_chr11_+_69867893_69867970	0.0191521	bHLH_family.p2	BC022106|Asgr1|11889|asialoglycoprotein receptor 1	U09362|Asgr1|11889|asialoglycoprotein receptor 1	BC014779|Asgr1|11889|asialoglycoprotein receptor 1
mm9_v1_chr12_+_103521406_103521481	0.0191142	bHLH_family.p2	AK166196|Rin3|217835|Ras and Rab interactor 3	AK171301|Rin3|217835|Ras and Rab interactor 3	AK154522|Rin3|217835|Ras and Rab interactor 3	AK171311|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr2_-_26459820_26459947	0.0190981	bHLH_family.p2	AK090271|Agpat2|67512|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)
mm9_v1_chrX_-_148776674_148776969	0.0190814	bHLH_family.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr2_+_25036524_25036678	0.0190451	bHLH_family.p2	BC069891|Nrarp|67122|Notch-regulated ankyrin repeat protein	AK012426|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr13_+_112599343_112599386	0.0188686	bHLH_family.p2	
mm9_v1_chrX_-_101017286_101017329	0.0187788	bHLH_family.p2	AF045692|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	NM_009197|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr8_+_87213209_87213224	0.0187599	bHLH_family.p2	AK032945|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chrX_+_68809092_68809096	0.0186152	bHLH_family.p2	AK141399|Hmgb3|15354|high mobility group box 3	AK146795|Hmgb3|15354|high mobility group box 3
mm9_v1_chr17_-_36408841_36408948	0.0185415	bHLH_family.p2	AB046382|Trim39|79263|tripartite motif-containing 39	NM_024468|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr3_+_121747377_121747377	0.0184418	bHLH_family.p2	AF000149|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	BC057853|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	NM_007378|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4
mm9_v1_chr12_-_111829789_111829814	0.0184243	bHLH_family.p2	AK020436|9430024F10Rik|77271|RIKEN cDNA 9430024F10 gene
mm9_v1_chr13_+_40955500_40955723	0.0183503	bHLH_family.p2	AK077598|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_023887|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK156328|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435148|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr15_+_12251250_12251389	0.0183475	bHLH_family.p2	AB271918|Golph3|66629|golgi phosphoprotein 3	BC051035|Golph3|66629|golgi phosphoprotein 3	NM_025673|Golph3|66629|golgi phosphoprotein 3	BC039909|Golph3|66629|golgi phosphoprotein 3	BC031445|Golph3|66629|golgi phosphoprotein 3
mm9_v1_chr16_-_45742890_45742979	0.018226	bHLH_family.p2	
mm9_v1_chr5_+_144861227_144861325	0.0181465	bHLH_family.p2	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr18_+_65183519_65183560	0.0181031	bHLH_family.p2	AF277232|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like	BC039746|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like	BC071210|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr6_-_116666759_116666930	0.0179753	bHLH_family.p2	BC116440|Tmem72|319776|transmembrane protein 72	BC116441|Tmem72|319776|transmembrane protein 72	AK085603|Tmem72|319776|transmembrane protein 72	NM_178768|Tmem72|319776|transmembrane protein 72	AK049938|Tmem72|319776|transmembrane protein 72	AK033856|Tmem72|319776|transmembrane protein 72	BC093486|Tmem72|319776|transmembrane protein 72	AK049048|Tmem72|319776|transmembrane protein 72	AK141578|Tmem72|319776|transmembrane protein 72
mm9_v1_chr9_-_78290953_78291043	0.0179422	bHLH_family.p2	BC052196|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	NM_173386|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK078662|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK054330|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK145268|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK154165|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145651|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145653|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK030292|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene
mm9_v1_chr9_-_96978102_96978110	0.0178791	bHLH_family.p2	AK087750|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr2_-_155755765_155755804	0.0175303	bHLH_family.p2	AK011953|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK054294|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK169413|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK077323|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AF253516|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK010376|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK011152|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK019425|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)
mm9_v1_chr17_+_24889931_24889960	0.0174042	bHLH_family.p2	AK146974|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	AY574375|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	NM_001012402|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	BC132520|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	BC138814|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6	BC145424|Hs3st6|328779|heparan sulfate (glucosamine) 3-O-sulfotransferase 6
mm9_v1_chr10_+_117578960_117579000	0.0172756	bHLH_family.p2	M20823|Mdm1|17245|transformed mouse 3T3 cell double minute 1	M20824|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490427|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490428|Mdm1|17245|transformed mouse 3T3 cell double minute 1
mm9_v1_chr2_-_136717103_136717141	0.0172612	bHLH_family.p2	BC080765|Mkks|59030|McKusick-Kaufman syndrome protein	BC058174|Mkks|59030|McKusick-Kaufman syndrome protein	NM_001141946|Mkks|59030|McKusick-Kaufman syndrome protein	NM_021527|Mkks|59030|McKusick-Kaufman syndrome protein
mm9_v1_chr3_+_105261699_105261733	0.0172565	bHLH_family.p2	BC141097|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	BC141098|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107781|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107782|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	NM_019931|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr11_-_65601657_65601750	0.017064	bHLH_family.p2	AK187893|Map2k4|26398|mitogen-activated protein kinase kinase 4	U18310|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr5_-_92511942_92511942	0.0169633	bHLH_family.p2	AK149427|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080797|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr17_+_36016728_36016783	0.0169368	bHLH_family.p2	BC009147|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16	BC046781|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16	BC138204|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16	BC138205|Dhx16|69192|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm9_v1_chr13_-_100972022_100972078	0.0169095	bHLH_family.p2	AF102871|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF135489|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF135490|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF381770|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AY147000|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AY147001|Naip2|17948|NLR family, apoptosis inhibitory protein 2	NM_001126182|Naip2|17948|NLR family, apoptosis inhibitory protein 2	NM_010872|Naip2|17948|NLR family, apoptosis inhibitory protein 2
mm9_v1_chr16_+_45224449_45224465	0.0168155	bHLH_family.p2	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr19_+_47654508_47654642	0.0167783	bHLH_family.p2	AF039574|Slk|20874|STE20-like kinase (yeast)	NM_001164639|Slk|20874|STE20-like kinase (yeast)	NM_009289|Slk|20874|STE20-like kinase (yeast)	BC131674|Slk|20874|STE20-like kinase (yeast)	BC131675|Slk|20874|STE20-like kinase (yeast)	AF112855|Slk|20874|STE20-like kinase (yeast)	AK029491|Slk|20874|STE20-like kinase (yeast)
mm9_v1_chr19_-_41068625_41068698	0.0166698	bHLH_family.p2	AJ222814|Blnk|17060|B-cell linker	AK172016|Blnk|17060|B-cell linker	BC059785|Blnk|17060|B-cell linker	AK089704|Blnk|17060|B-cell linker	AF068182|Blnk|17060|B-cell linker	AB015290|Blnk|17060|B-cell linker
mm9_v1_chr9_+_108241754_108241796	0.0166445	bHLH_family.p2	AK191208|Gpx1|14775|glutathione peroxidase 1	AK191913|Gpx1|14775|glutathione peroxidase 1	AK200043|Gpx1|14775|glutathione peroxidase 1	AK201721|Gpx1|14775|glutathione peroxidase 1	AK202661|Gpx1|14775|glutathione peroxidase 1	AK205185|Gpx1|14775|glutathione peroxidase 1
mm9_v1_chr16_-_35939001_35939021	0.0164935	bHLH_family.p2	AK090152|Dtx3l|209200|deltex 3-like (Drosophila)	BC085093|Dtx3l|209200|deltex 3-like (Drosophila)	AK146802|Dtx3l|209200|deltex 3-like (Drosophila)
mm9_v1_chr11_+_77845840_77845855	0.0164721	bHLH_family.p2	AK011939|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	BC115881|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	AK046465|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr2_+_51928350_51928369	0.0163849	bHLH_family.p2	AY428571|Rif1|51869|Rap1 interacting factor 1 homolog (yeast)	NM_175238|Rif1|51869|Rap1 interacting factor 1 homolog (yeast)	AY585206|Rif1|51869|Rap1 interacting factor 1 homolog (yeast)
mm9_v1_chr4_-_63156984_63157036	0.0163562	bHLH_family.p2	AY739114|Whrn|73750|whirlin	AY739115|Whrn|73750|whirlin	AY739116|Whrn|73750|whirlin	AY739117|Whrn|73750|whirlin	AY739118|Whrn|73750|whirlin	AY739119|Whrn|73750|whirlin	AY739120|Whrn|73750|whirlin	NM_001008791|Whrn|73750|whirlin	NM_001008792|Whrn|73750|whirlin	NM_001008793|Whrn|73750|whirlin	NM_001008794|Whrn|73750|whirlin	NM_001008795|Whrn|73750|whirlin	NM_001008796|Whrn|73750|whirlin	NM_028640|Whrn|73750|whirlin	AK157955|Whrn|73750|whirlin
mm9_v1_chr6_-_24614965_24614972	0.0162917	bHLH_family.p2	AK144789|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC055045|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr2_+_29933228_29933262	0.0162661	bHLH_family.p2	AK154801|Pkn3|263803|protein kinase N3
mm9_v1_chr3_+_114606995_114607339	0.0162649	bHLH_family.p2	AK049612|Olfm3|229759|olfactomedin 3	AK044605|Olfm3|229759|olfactomedin 3	AK045482|Olfm3|229759|olfactomedin 3	AK038569|Olfm3|229759|olfactomedin 3	AK079315|Olfm3|229759|olfactomedin 3	AK044325|Olfm3|229759|olfactomedin 3	AK137414|Olfm3|229759|olfactomedin 3	AF442825|Olfm3|229759|olfactomedin 3	NM_153458|Olfm3|229759|olfactomedin 3	BC112422|Olfm3|229759|olfactomedin 3	BC113129|Olfm3|229759|olfactomedin 3
mm9_v1_chr9_-_123022207_123022342	0.016261	bHLH_family.p2	BC052464|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK169197|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC018334|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK018755|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK080541|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK007355|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC005531|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC025126|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK046166|Zdhhc3|69035|zinc finger, DHHC domain containing 3	NM_026917|Zdhhc3|69035|zinc finger, DHHC domain containing 3
mm9_v1_chr7_-_17641980_17642027	0.0162442	bHLH_family.p2	BC120587|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	AF060194|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	NM_016868|Hif3a|53417|hypoxia inducible factor 3, alpha subunit
mm9_v1_chr12_+_37835132_37835270	0.0162148	bHLH_family.p2	AK028352|Meox2|17286|mesenchyme homeobox 2	NM_008584|Meox2|17286|mesenchyme homeobox 2	AK031152|Meox2|17286|mesenchyme homeobox 2	BC002076|Meox2|17286|mesenchyme homeobox 2	AK142690|Meox2|17286|mesenchyme homeobox 2	Z16406|Meox2|17286|mesenchyme homeobox 2
mm9_v1_chr17_+_25325344_25325353	0.0161953	bHLH_family.p2	NM_001197024|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chrX_-_47141382_47141419	0.0161048	bHLH_family.p2	BC119264|Igsf1|209268|immunoglobulin superfamily, member 1	BC119266|Igsf1|209268|immunoglobulin superfamily, member 1	BC144762|Igsf1|209268|immunoglobulin superfamily, member 1	AK076427|Igsf1|209268|immunoglobulin superfamily, member 1	AY227774|Igsf1|209268|immunoglobulin superfamily, member 1	AK030701|Igsf1|209268|immunoglobulin superfamily, member 1	NM_183336|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chr1_-_121545158_121545240	0.0160815	bHLH_family.p2	BC003937|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5
mm9_v1_chr11_-_3831963_3832085	0.0157852	bHLH_family.p2	AK143761|Tcn2|21452|transcobalamin 2	NM_001130459|Tcn2|21452|transcobalamin 2	AK161618|Tcn2|21452|transcobalamin 2	AK147176|Tcn2|21452|transcobalamin 2	AK133707|Tcn2|21452|transcobalamin 2	NM_015749|Tcn2|21452|transcobalamin 2	AK170401|Tcn2|21452|transcobalamin 2	NM_001130458|Tcn2|21452|transcobalamin 2
mm9_v1_chr3_-_51200423_51200468	0.0157798	bHLH_family.p2	BC022740|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AK006339|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	BC049556|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AK016342|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AF228502|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	AK151401|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	BC012511|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene	NM_026358|4930583H14Rik|67749|RIKEN cDNA 4930583H14 gene
mm9_v1_chr4_+_155265932_155266005	0.0157718	bHLH_family.p2	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr13_-_95992994_95993009	0.0156184	bHLH_family.p2	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr17_-_35342157_35342435	0.0155619	bHLH_family.p2	AK080308|Lta|16992|lymphotoxin A	AK153694|Lta|16992|lymphotoxin A	BC099464|Lta|16992|lymphotoxin A	NM_010735|Lta|16992|lymphotoxin A	AK156659|Lta|16992|lymphotoxin A
mm9_v1_chr18_+_65183180_65183324	0.0155165	bHLH_family.p2	NM_031881|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chr2_-_118982714_118982769	0.0154775	bHLH_family.p2	BC061186|Fam82a2|67809|family with sequence similarity 82, member A2	AK171770|Fam82a2|67809|family with sequence similarity 82, member A2	NM_001033136|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr5_+_32913539_32913707	0.0153891	bHLH_family.p2	AK035612|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK031316|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK052478|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	NM_009535|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	X67677|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	BC010594|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm9_v1_chr6_-_82889694_82889743	0.0153259	bHLH_family.p2	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr10_+_126703317_126703496	0.0152869	bHLH_family.p2	NM_001190453|Dctn2|69654|dynactin 2	NM_001190454|Dctn2|69654|dynactin 2	NM_027151|Dctn2|69654|dynactin 2	AK081785|Dctn2|69654|dynactin 2	AK054390|Dctn2|69654|dynactin 2	AK164021|Dctn2|69654|dynactin 2	AK144464|Dctn2|69654|dynactin 2	AK144505|Dctn2|69654|dynactin 2	BC004613|Dctn2|69654|dynactin 2
mm9_v1_chr9_+_107948285_107948372	0.0152747	bHLH_family.p2	AK208685|Ip6k1|27399|inositol hexaphosphate kinase 1	AK211834|Ip6k1|27399|inositol hexaphosphate kinase 1	AK191619|Ip6k1|27399|inositol hexaphosphate kinase 1	AK215657|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr1_+_9538119_9538173	0.0152653	bHLH_family.p2	NM_175236|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	AK018241|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	AK038853|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	AK050178|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	BC026584|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1
mm9_v1_chr8_+_75103478_75103489	0.0151997	bHLH_family.p2	AK186226|Tmem38a|74166|transmembrane protein 38A	AK210010|Tmem38a|74166|transmembrane protein 38A	AK210187|Tmem38a|74166|transmembrane protein 38A	AK215082|Tmem38a|74166|transmembrane protein 38A
mm9_v1_chr7_+_111054855_111054855	0.015172	bHLH_family.p2	BC137766|Olfr65|18365|olfactory receptor 65	NM_013616|Olfr65|18365|olfactory receptor 65
mm9_v1_chr17_-_26338254_26338295	0.0151057	bHLH_family.p2	BC002032|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	NM_008113|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr16_+_36875173_36875328	0.0150697	bHLH_family.p2	AK155420|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1	AK155415|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1	AK020091|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1	BC061204|Golgb1|224139|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm9_v1_chr9_-_45762863_45762870	0.0150649	bHLH_family.p2	AK196459|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr1_-_137268058_137268336	0.015023	bHLH_family.p2	AK199485|Shisa4|77552|shisa homolog 4 (Xenopus laevis)	AK212908|Shisa4|77552|shisa homolog 4 (Xenopus laevis)
mm9_v1_chr4_-_154735351_154735519	0.01491	bHLH_family.p2	BC139761|Prkcz|18762|protein kinase C, zeta	M94632|Prkcz|18762|protein kinase C, zeta	AK165750|Prkcz|18762|protein kinase C, zeta	NM_008860|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr15_+_89259892_89260019	0.0148078	bHLH_family.p2	AK083297|C730034F03Rik|319362|RIKEN cDNA C730034F03 gene	AK053866|C730034F03Rik|319362|RIKEN cDNA C730034F03 gene
mm9_v1_chr14_+_21748602_21748628	0.0147984	bHLH_family.p2	AK077850|Vcl|22330|vinculin	AK135530|Vcl|22330|vinculin
mm9_v1_chr3_+_94778716_94778752	0.0146342	bHLH_family.p2	BC138457|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	BC138458|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide	BC113781|Pi4kb|107650|phosphatidylinositol 4-kinase, catalytic, beta polypeptide
mm9_v1_chr9_+_108849434_108849501	0.0144862	bHLH_family.p2	BC018405|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr5_+_33369240_33369358	0.0144568	bHLH_family.p2	AK217599|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr9_-_108476927_108477095	0.0142596	bHLH_family.p2	AK194255|Wdr6|83669|WD repeat domain 6
mm9_v1_chr9_+_50561381_50561415	0.0142529	bHLH_family.p2	CT010341|Cryab|12955|crystallin, alpha B	M63170|Cryab|12955|crystallin, alpha B
mm9_v1_chr11_+_102291828_102291840	0.0139069	bHLH_family.p2	AK152944|Grn|14824|granulin	AK153183|Grn|14824|granulin	AK159397|Grn|14824|granulin	AK159428|Grn|14824|granulin	AK160074|Grn|14824|granulin	AK152118|Grn|14824|granulin	AK160022|Grn|14824|granulin	AK150420|Grn|14824|granulin	BC049943|Grn|14824|granulin	AK152213|Grn|14824|granulin	BC129849|Grn|14824|granulin	BC129850|Grn|14824|granulin	AK150338|Grn|14824|granulin	M86736|Grn|14824|granulin
mm9_v1_chr11_+_115836022_115836269	0.013894	bHLH_family.p2	L04678|Itgb4|192897|integrin beta 4	AK147424|Itgb4|192897|integrin beta 4	NM_001005608|Itgb4|192897|integrin beta 4	NM_133663|Itgb4|192897|integrin beta 4	AK048888|Itgb4|192897|integrin beta 4
mm9_v1_chr10_+_96079634_96079769	0.0138684	bHLH_family.p2	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr1_-_164478628_164478690	0.0138639	bHLH_family.p2	AK173044|Mettl13|71449|methyltransferase like 13	AK084750|Mettl13|71449|methyltransferase like 13	AK048636|Mettl13|71449|methyltransferase like 13	AK017470|Mettl13|71449|methyltransferase like 13	AK162843|Mettl13|71449|methyltransferase like 13	AK050492|Mettl13|71449|methyltransferase like 13	AK146751|Mettl13|71449|methyltransferase like 13	AK169319|Mettl13|71449|methyltransferase like 13	AK168959|Mettl13|71449|methyltransferase like 13
mm9_v1_chr15_+_33012913_33012952	0.0137326	bHLH_family.p2	AF107835|Pgcp|54381|plasma glutamate carboxypeptidase	AK011656|Pgcp|54381|plasma glutamate carboxypeptidase	AK075686|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr1_-_181476342_181476404	0.0136366	bHLH_family.p2	BC138836|Tfb2m|15278|transcription factor B2, mitochondrial	BC138837|Tfb2m|15278|transcription factor B2, mitochondrial	AK167930|Tfb2m|15278|transcription factor B2, mitochondrial	M74555|Tfb2m|15278|transcription factor B2, mitochondrial	AK090106|Tfb2m|15278|transcription factor B2, mitochondrial	AK168970|Tfb2m|15278|transcription factor B2, mitochondrial	AK169138|Tfb2m|15278|transcription factor B2, mitochondrial	AK166717|Tfb2m|15278|transcription factor B2, mitochondrial	AK146563|Tfb2m|15278|transcription factor B2, mitochondrial	NM_008249|Tfb2m|15278|transcription factor B2, mitochondrial
mm9_v1_chr12_+_4133370_4133572	0.0134837	bHLH_family.p2	NM_001159536|Adcy3|104111|adenylate cyclase 3	NM_001159537|Adcy3|104111|adenylate cyclase 3	AK122298|Adcy3|104111|adenylate cyclase 3	BC057113|Adcy3|104111|adenylate cyclase 3	BC057316|Adcy3|104111|adenylate cyclase 3
mm9_v1_chr17_-_56556337_56556420	0.0134738	bHLH_family.p2	S59186|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr8_+_86239094_86239097	0.0134263	bHLH_family.p2	NM_197982|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr10_+_77079550_77079583	0.0132587	bHLH_family.p2	
mm9_v1_chr5_-_122017937_122018000	0.013242	bHLH_family.p2	
mm9_v1_chr3_+_86028140_86028161	0.0131589	bHLH_family.p2	AK052148|Lrba|80877|LPS-responsive beige-like anchor
mm9_v1_chrX_+_33652066_33652189	0.013145	bHLH_family.p2	AK154675|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK089984|Il13ra1|16164|interleukin 13 receptor, alpha 1	BC052425|Il13ra1|16164|interleukin 13 receptor, alpha 1	NM_133990|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK080147|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK143292|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK082889|Il13ra1|16164|interleukin 13 receptor, alpha 1	BC059939|Il13ra1|16164|interleukin 13 receptor, alpha 1
mm9_v1_chr14_+_32481114_32481230	0.0131205	bHLH_family.p2	AK189055|Btd|26363|biotinidase
mm9_v1_chr7_+_4071171_4071355	0.0130589	bHLH_family.p2	AF190699|Ttyh1|57776|tweety homolog 1 (Drosophila)	AF190991|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK081981|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK048413|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC065694|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK018148|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC046310|Ttyh1|57776|tweety homolog 1 (Drosophila)	AB162929|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK042758|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr11_-_82684653_82684724	0.0130306	bHLH_family.p2	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr2_-_153355706_153355706	0.0130154	bHLH_family.p2	AK147524|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001134300|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr11_+_100721765_100721860	0.0130091	bHLH_family.p2	NM_001164062|Stat5a|20850|signal transducer and activator of transcription 5A	AK090254|Stat5a|20850|signal transducer and activator of transcription 5A	BC056647|Stat5a|20850|signal transducer and activator of transcription 5A	Z48538|Stat5a|20850|signal transducer and activator of transcription 5A	AY299491|Stat5a|20850|signal transducer and activator of transcription 5A	AY299492|Stat5a|20850|signal transducer and activator of transcription 5A	EU249543|Stat5a|20850|signal transducer and activator of transcription 5A	AK154070|Stat5a|20850|signal transducer and activator of transcription 5A	BC008998|Stat5a|20850|signal transducer and activator of transcription 5A
mm9_v1_chr3_-_54611663_54611730	0.0129914	bHLH_family.p2	BC019935|Rfxap|170767|regulatory factor X-associated protein	BC047123|Rfxap|170767|regulatory factor X-associated protein	AF335512|Rfxap|170767|regulatory factor X-associated protein	AK144633|Rfxap|170767|regulatory factor X-associated protein	AB030193|Rfxap|170767|regulatory factor X-associated protein	AK077640|Rfxap|170767|regulatory factor X-associated protein	AK087489|Rfxap|170767|regulatory factor X-associated protein	NM_133231|Rfxap|170767|regulatory factor X-associated protein
mm9_v1_chr8_+_73051651_73051898	0.012856	bHLH_family.p2	AK167663|Fkbp8|14232|FK506 binding protein 8	AK158155|Fkbp8|14232|FK506 binding protein 8	AY278608|Fkbp8|14232|FK506 binding protein 8	BC027808|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr10_+_79482419_79482458	0.0126684	bHLH_family.p2	BC053750|Hmha1|70719|histocompatibility (minor) HA-1	NM_027521|Hmha1|70719|histocompatibility (minor) HA-1	AK044860|Hmha1|70719|histocompatibility (minor) HA-1
mm9_v1_chr11_+_103053625_103053722	0.0126345	bHLH_family.p2	AK158820|Fmnl1|57778|formin-like 1
mm9_v1_chr9_+_44206431_44206438	0.0125337	bHLH_family.p2	AK003620|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AF080469|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chrX_-_54579777_54579845	0.012403	bHLH_family.p2	AK028642|Arhgef6|73341|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm9_v1_chr9_-_24956188_24956257	0.0123933	bHLH_family.p2	AK164769|Herpud2|80517|HERPUD family member 2	AK019862|Herpud2|80517|HERPUD family member 2
mm9_v1_chr19_+_11844839_11844928	0.0123592	bHLH_family.p2	AK165616|Mrpl16|94063|mitochondrial ribosomal protein L16	BC044721|Mrpl16|94063|mitochondrial ribosomal protein L16	AK011971|Mrpl16|94063|mitochondrial ribosomal protein L16	BC029009|Mrpl16|94063|mitochondrial ribosomal protein L16	AB049643|Mrpl16|94063|mitochondrial ribosomal protein L16	NM_025606|Mrpl16|94063|mitochondrial ribosomal protein L16	AK004034|Mrpl16|94063|mitochondrial ribosomal protein L16	AK009687|Mrpl16|94063|mitochondrial ribosomal protein L16
mm9_v1_chrX_+_162608411_162608448	0.0122765	bHLH_family.p2	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr14_+_55059217_55059253	0.0122411	bHLH_family.p2	AY622974|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr2_+_31325818_31325829	0.0121459	bHLH_family.p2	AK149489|Ass1|11898|argininosuccinate synthetase 1	AK146635|Ass1|11898|argininosuccinate synthetase 1
mm9_v1_chr9_+_53345160_53345178	0.0119671	bHLH_family.p2	AK033012|Npat|244879|nuclear protein in the AT region
mm9_v1_chr11_+_59021811_59021915	0.0119233	bHLH_family.p2	AK012628|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	NM_024210|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	BC002181|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	AK009601|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene
mm9_v1_chr16_-_78576914_78576958	0.0118682	bHLH_family.p2	AK044670|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr17_+_34729396_34729495	0.0118587	bHLH_family.p2	AF020198|Pbx2|18515|pre B-cell leukemia transcription factor 2	NM_017463|Pbx2|18515|pre B-cell leukemia transcription factor 2	BC087615|Pbx2|18515|pre B-cell leukemia transcription factor 2	AK134357|Pbx2|18515|pre B-cell leukemia transcription factor 2
mm9_v1_chr6_-_128493413_128493444	0.0118158	bHLH_family.p2	BC048546|BC048546|232400|cDNA sequence BC048546
mm9_v1_chr8_-_91159932_91160026	0.0117562	bHLH_family.p2	BC039809|Snx20|71607|sorting nexin 20	AK157032|Snx20|71607|sorting nexin 20	AK157884|Snx20|71607|sorting nexin 20	AK170109|Snx20|71607|sorting nexin 20	AK042068|Snx20|71607|sorting nexin 20	AK018632|Snx20|71607|sorting nexin 20	NM_027840|Snx20|71607|sorting nexin 20
mm9_v1_chr1_-_95646769_95646865	0.011754	bHLH_family.p2	AK213476|Thap4|67026|THAP domain containing 4	BC013538|Thap4|67026|THAP domain containing 4	AK216112|Thap4|67026|THAP domain containing 4
mm9_v1_chr15_-_9678531_9678622	0.0117228	bHLH_family.p2	AK041992|Spef2|320277|sperm flagellar 2	BC132098|Spef2|320277|sperm flagellar 2	BC132288|Spef2|320277|sperm flagellar 2	NM_177123|Spef2|320277|sperm flagellar 2	AK048961|Spef2|320277|sperm flagellar 2
mm9_v1_chr10_-_61693914_61693931	0.0117207	bHLH_family.p2	BC003872|Tspan15|70423|tetraspanin 15
mm9_v1_chr17_+_34729498_34729688	0.0116539	bHLH_family.p2	CT010391|Pbx2|18515|pre B-cell leukemia transcription factor 2
mm9_v1_chr14_-_51766415_51766443	0.0116263	bHLH_family.p2	M27814|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	BC030036|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	AK075775|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)	NM_011271|Rnase1|19752|ribonuclease, RNase A family, 1 (pancreatic)
mm9_v1_chr14_+_65568881_65568881	0.011464	bHLH_family.p2	AK077634|Ints9|210925|integrator complex subunit 9	NM_153414|Ints9|210925|integrator complex subunit 9
mm9_v1_chr16_+_16983772_16983783	0.0113736	bHLH_family.p2	AK216848|Mapk1|26413|mitogen-activated protein kinase 1	AK205643|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr15_-_96472600_96472827	0.0113683	bHLH_family.p2	AK040250|Slc38a1|105727|solute carrier family 38, member 1	AK029189|Slc38a1|105727|solute carrier family 38, member 1	BC066815|Slc38a1|105727|solute carrier family 38, member 1	BC030378|Slc38a1|105727|solute carrier family 38, member 1	AK049173|Slc38a1|105727|solute carrier family 38, member 1	AK050914|Slc38a1|105727|solute carrier family 38, member 1	AK082683|Slc38a1|105727|solute carrier family 38, member 1	NM_001166456|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr9_+_21760196_21760229	0.0112669	bHLH_family.p2	NM_025870|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC150493|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK009864|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC019749|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK043948|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene
mm9_v1_chr9_+_107444539_107444545	0.0112544	bHLH_family.p2	NM_018879|Nprl2|56032|nitrogen permease regulator-like 2 (S. cerevisiae)
mm9_v1_chr4_+_120527397_120527477	0.0110487	bHLH_family.p2	AK047745|Rims3|242662|regulating synaptic membrane exocytosis 3	AK043152|Rims3|242662|regulating synaptic membrane exocytosis 3
mm9_v1_chr5_+_31167731_31167889	0.0109983	bHLH_family.p2	AK210919|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr3_-_68848657_68848670	0.0109915	bHLH_family.p2	AK012269|Trim59|66949|tripartite motif-containing 59	NM_025863|Trim59|66949|tripartite motif-containing 59
mm9_v1_chr1_-_64125352_64125397	0.0109634	bHLH_family.p2	AK086122|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK036514|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chrX_-_67730213_67730252	0.0108193	bHLH_family.p2	BC138670|BC023829|236848|cDNA sequence BC023829	BC145368|BC023829|236848|cDNA sequence BC023829	AK158294|BC023829|236848|cDNA sequence BC023829	NM_001033328|BC023829|236848|cDNA sequence BC023829
mm9_v1_chr13_+_36209279_36209279	0.0108132	bHLH_family.p2	NM_001039189|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	NM_024274|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr8_+_58773321_58773362	0.0107182	bHLH_family.p2	NM_008278|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm9_v1_chr19_-_5098486_5098495	0.0105283	bHLH_family.p2	BC103797|Cnih2|12794|cornichon homolog 2 (Drosophila)
mm9_v1_chr1_-_121318824_121318824	0.010521	bHLH_family.p2	AK132352|Inhbb|16324|inhibin beta-B	NM_008381|Inhbb|16324|inhibin beta-B
mm9_v1_chr4_-_46548933_46549015	0.0105187	bHLH_family.p2	AK133220|Trim14|74735|tripartite motif-containing 14	AK148837|Trim14|74735|tripartite motif-containing 14	AK017887|Trim14|74735|tripartite motif-containing 14	AK172895|Trim14|74735|tripartite motif-containing 14	AK076277|Trim14|74735|tripartite motif-containing 14	BC116738|Trim14|74735|tripartite motif-containing 14	BC119130|Trim14|74735|tripartite motif-containing 14	AB117644|Trim14|74735|tripartite motif-containing 14	NM_029077|Trim14|74735|tripartite motif-containing 14
mm9_v1_chr10_+_127526038_127526102	0.0105142	bHLH_family.p2	BC018392|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK183981|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK198015|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK198554|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK200200|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK205830|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK212143|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK178407|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK182340|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK189215|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK190147|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK191197|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK192149|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK198620|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK202885|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK215685|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK216714|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK217489|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK195031|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK196936|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK198338|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr17_-_45722206_45722315	0.0102427	bHLH_family.p2	AK214128|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK215659|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK216350|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK220067|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr3_+_89006938_89006939	0.0101981	bHLH_family.p2	M24119|Gba|14466|glucosidase, beta, acid
mm9_v1_chr4_+_104438905_104438999	0.0101853	bHLH_family.p2	AK050313|C8b|110382|complement component 8, beta polypeptide	NM_133882|C8b|110382|complement component 8, beta polypeptide	BC096382|C8b|110382|complement component 8, beta polypeptide	AB077304|C8b|110382|complement component 8, beta polypeptide	AB077305|C8b|110382|complement component 8, beta polypeptide	AB077306|C8b|110382|complement component 8, beta polypeptide
mm9_v1_chr7_-_137663474_137663533	0.0101151	bHLH_family.p2	DQ093639|Ate1|11907|arginyltransferase 1	DQ093640|Ate1|11907|arginyltransferase 1	NM_001029895|Ate1|11907|arginyltransferase 1	AK138277|Ate1|11907|arginyltransferase 1
mm9_v1_chr15_-_36700634_36700638	0.0100593	bHLH_family.p2	AK003664|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr5_+_138188092_138188197	0.0100467	bHLH_family.p2	BC018544|Tsc22d4|78829|TSC22 domain family, member 4	AK144806|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr10_+_61111331_61111422	0.00992779	bHLH_family.p2	AK020291|Ppa1|67895|pyrophosphatase (inorganic) 1	AK008575|Ppa1|67895|pyrophosphatase (inorganic) 1	AK033434|Ppa1|67895|pyrophosphatase (inorganic) 1	AK088397|Ppa1|67895|pyrophosphatase (inorganic) 1	NM_026438|Ppa1|67895|pyrophosphatase (inorganic) 1	AK151512|Ppa1|67895|pyrophosphatase (inorganic) 1	AK146300|Ppa1|67895|pyrophosphatase (inorganic) 1
mm9_v1_chr9_-_44226119_44226149	0.00954563	bHLH_family.p2	AK162606|Ccdc84|382073|coiled-coil domain containing 84
mm9_v1_chr17_-_47748405_47748448	0.00946324	bHLH_family.p2	AK083033|Bysl|53414|bystin-like	AK051704|Bysl|53414|bystin-like	AK049195|Bysl|53414|bystin-like	AK143027|Bysl|53414|bystin-like	NM_016859|Bysl|53414|bystin-like
mm9_v1_chr19_-_43827386_43827505	0.00925986	bHLH_family.p2	AK051792|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC021498|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK141631|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC011509|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK048099|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	NM_144874|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)
mm9_v1_chr10_+_59747208_59747231	0.00924001	bHLH_family.p2	AK149785|Psap|19156|prosaposin	NM_001146124|Psap|19156|prosaposin
mm9_v1_chr4_+_140703843_140703846	0.00923017	bHLH_family.p2	AK170202|Fbxo42|213499|F-box protein 42	AK171215|Fbxo42|213499|F-box protein 42	BC058667|Fbxo42|213499|F-box protein 42	AK150804|Fbxo42|213499|F-box protein 42
mm9_v1_chr7_-_148452299_148452324	0.00920926	bHLH_family.p2	NM_016850|Irf7|54123|interferon regulatory factor 7	U73037|Irf7|54123|interferon regulatory factor 7	AK004349|Irf7|54123|interferon regulatory factor 7	AK150608|Irf7|54123|interferon regulatory factor 7	AK158378|Irf7|54123|interferon regulatory factor 7	AK158403|Irf7|54123|interferon regulatory factor 7	AK089869|Irf7|54123|interferon regulatory factor 7	AK002830|Irf7|54123|interferon regulatory factor 7	AK079685|Irf7|54123|interferon regulatory factor 7	AK150403|Irf7|54123|interferon regulatory factor 7	AK151470|Irf7|54123|interferon regulatory factor 7	AK152401|Irf7|54123|interferon regulatory factor 7	AK152403|Irf7|54123|interferon regulatory factor 7	AK153054|Irf7|54123|interferon regulatory factor 7	AK155950|Irf7|54123|interferon regulatory factor 7	AK159142|Irf7|54123|interferon regulatory factor 7	AK159883|Irf7|54123|interferon regulatory factor 7
mm9_v1_chr17_+_72119030_72119041	0.00920156	bHLH_family.p2	AK029962|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	NM_175378|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK018895|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK075758|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK161301|Clip4|78785|CAP-GLY domain containing linker protein family, member 4
mm9_v1_chr7_-_133636378_133636456	0.00915583	bHLH_family.p2	AK219263|Atxn2l|233871|ataxin 2-like
mm9_v1_chr19_+_4745119_4745306	0.00915035	bHLH_family.p2	BC079628|Spnb3|20743|spectrin beta 3	BC048851|Spnb3|20743|spectrin beta 3
mm9_v1_chr11_+_75281563_75281593	0.0089306	bHLH_family.p2	BC021945|Tlcd2|380712|TLC domain containing 2	NM_027249|Tlcd2|380712|TLC domain containing 2	AK008522|Tlcd2|380712|TLC domain containing 2
mm9_v1_chr6_+_83067649_83067918	0.00893031	bHLH_family.p2	AK007528|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr5_+_117827904_117828056	0.0088838	bHLH_family.p2	AK195234|Wsb2|59043|WD repeat and SOCS box-containing 2	AK198504|Wsb2|59043|WD repeat and SOCS box-containing 2	AK206996|Wsb2|59043|WD repeat and SOCS box-containing 2	AK210681|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr16_+_35541447_35541447	0.00886289	bHLH_family.p2	BC052397|Sema5b|20357|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	NM_013661|Sema5b|20357|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
mm9_v1_chr19_+_13439119_13439119	0.00884399	bHLH_family.p2	NM_146691|Olfr1467|258686|olfactory receptor 1467
mm9_v1_chr17_+_5941279_5941541	0.00866961	bHLH_family.p2	AF041857|Synj2|20975|synaptojanin 2	NM_001113352|Synj2|20975|synaptojanin 2	NM_001113353|Synj2|20975|synaptojanin 2	AK142919|Synj2|20975|synaptojanin 2	BC058749|Synj2|20975|synaptojanin 2	AK148053|Synj2|20975|synaptojanin 2
mm9_v1_chr8_+_87607167_87607182	0.0086505	bHLH_family.p2	NM_010764|Man2b1|17159|mannosidase 2, alpha B1	AK169830|Man2b1|17159|mannosidase 2, alpha B1
mm9_v1_chr7_-_106987766_106987861	0.00861066	bHLH_family.p2	AK180141|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr9_-_57531452_57531467	0.00855812	bHLH_family.p2	BC054827|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	K02589|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	NM_009993|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	X00479|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr9_+_109735261_109735329	0.0084668	bHLH_family.p2	AK004201|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	AF051942|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	BC002007|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	NM_018757|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr12_-_70473320_70473513	0.00843665	bHLH_family.p2	AK017126|Gm9887|100036526|predicted gene 9887	AK015077|Gm9887|100036526|predicted gene 9887	AK016848|Gm9887|100036526|predicted gene 9887
mm9_v1_chr8_-_3625510_3625544	0.00838693	bHLH_family.p2	BC014694|Pcp2|18545|Purkinje cell protein 2 (L7)	BC028982|Pcp2|18545|Purkinje cell protein 2 (L7)	BC024853|Pcp2|18545|Purkinje cell protein 2 (L7)	EU164759|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129803|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr3_-_157689714_157689821	0.00838403	bHLH_family.p2	AK218604|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183815|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183987|Srsf11|69207|serine/arginine-rich splicing factor 11	AK212592|Srsf11|69207|serine/arginine-rich splicing factor 11	AK215844|Srsf11|69207|serine/arginine-rich splicing factor 11	AK216204|Srsf11|69207|serine/arginine-rich splicing factor 11	AK218039|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr15_+_65703468_65703625	0.00829088	bHLH_family.p2	AK039483|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chr10_+_105278511_105278556	0.00826142	bHLH_family.p2	AK135550|Ccdc59|52713|coiled-coil domain containing 59	AK019970|Ccdc59|52713|coiled-coil domain containing 59	NM_025602|Ccdc59|52713|coiled-coil domain containing 59	BC027401|Ccdc59|52713|coiled-coil domain containing 59	AK012917|Ccdc59|52713|coiled-coil domain containing 59
mm9_v1_chr9_-_103595136_103595138	0.00815335	bHLH_family.p2	AK132350|Tmem108|81907|transmembrane protein 108
mm9_v1_chr4_-_141161882_141162024	0.00811332	bHLH_family.p2	AK170440|Fblim1|74202|filamin binding LIM protein 1	AK154680|Fblim1|74202|filamin binding LIM protein 1	AK163587|Fblim1|74202|filamin binding LIM protein 1	AK170151|Fblim1|74202|filamin binding LIM protein 1	NM_133754|Fblim1|74202|filamin binding LIM protein 1
mm9_v1_chr5_-_122915995_122916040	0.00810201	bHLH_family.p2	AK210339|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr2_-_91773029_91773128	0.00806805	bHLH_family.p2	
mm9_v1_chr15_+_9001154_9001214	0.00806049	bHLH_family.p2	BC115776|1110020G09Rik|68646|RIKEN cDNA 1110020G09 gene
mm9_v1_chr7_+_52955153_52955456	0.00802814	bHLH_family.p2	AK140073|Car11|12348|carbonic anhydrase 11	AK013465|Car11|12348|carbonic anhydrase 11	AY075026|Car11|12348|carbonic anhydrase 11	NM_009800|Car11|12348|carbonic anhydrase 11	BC019393|Car11|12348|carbonic anhydrase 11
mm9_v1_chr16_+_4937622_4937664	0.00793747	bHLH_family.p2	AK189949|Mgrn1|17237|mahogunin, ring finger 1	AK194956|Mgrn1|17237|mahogunin, ring finger 1	AK218167|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr9_-_54509658_54509691	0.00792007	bHLH_family.p2	AB050554|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	NM_053178|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr4_-_148500769_148500849	0.00790205	bHLH_family.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr6_-_127076410_127076426	0.00789222	bHLH_family.p2	AK011225|Ccnd2|12444|cyclin D2
mm9_v1_chr17_-_47748155_47748220	0.00784037	bHLH_family.p2	BC017530|Bysl|53414|bystin-like	AK032993|Bysl|53414|bystin-like	AK019239|Bysl|53414|bystin-like	AK168301|Bysl|53414|bystin-like
mm9_v1_chr8_+_90661746_90661852	0.00783348	bHLH_family.p2	AK047782|Heatr3|234549|HEAT repeat containing 3	AK052635|Heatr3|234549|HEAT repeat containing 3	AK165541|Heatr3|234549|HEAT repeat containing 3	AK140522|Heatr3|234549|HEAT repeat containing 3	AK136424|Heatr3|234549|HEAT repeat containing 3	AK134510|Heatr3|234549|HEAT repeat containing 3	BC065060|Heatr3|234549|HEAT repeat containing 3	NM_172757|Heatr3|234549|HEAT repeat containing 3	AK163715|Heatr3|234549|HEAT repeat containing 3
mm9_v1_chr1_+_74421706_74421882	0.00775199	bHLH_family.p2	AK090303|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	NM_013612|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	AK171393|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	AK144237|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	AK171343|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	L13732|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	X75355|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	BC109137|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	BC109138|Slc11a1|18173|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1
mm9_v1_chr6_+_106719113_106719221	0.00766097	bHLH_family.p2	AK135791|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK010662|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AB063106|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK152739|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	BC031764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	NM_027296|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK011764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK166804|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK139764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1
mm9_v1_chr7_+_123587067_123587088	0.00757543	bHLH_family.p2	
mm9_v1_chr12_-_85489188_85489438	0.00744095	bHLH_family.p2	BC116688|Pnma1|70481|paraneoplastic antigen MA1	BC116687|Pnma1|70481|paraneoplastic antigen MA1	AK017476|Pnma1|70481|paraneoplastic antigen MA1	AK028331|Pnma1|70481|paraneoplastic antigen MA1	AK136933|Pnma1|70481|paraneoplastic antigen MA1	NM_027438|Pnma1|70481|paraneoplastic antigen MA1
mm9_v1_chr3_-_92289795_92289819	0.00741195	bHLH_family.p2	X91824|Sprr1a|20753|small proline-rich protein 1A	BC027534|Sprr1a|20753|small proline-rich protein 1A	NM_009264|Sprr1a|20753|small proline-rich protein 1A	AK144782|Sprr1a|20753|small proline-rich protein 1A
mm9_v1_chr7_+_50469408_50469408	0.0073758	bHLH_family.p2	EU599041|EU599041|100170401|expressed sequence EU599041	EU599042|EU599041|100170401|expressed sequence EU599041	NM_001177525|EU599041|100170401|expressed sequence EU599041
mm9_v1_chr17_+_79451501_79451601	0.00721424	bHLH_family.p2	BC151027|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	BC151029|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	BC020023|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK148394|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK017598|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK037197|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
mm9_v1_chr5_+_125483816_125483844	0.00719546	bHLH_family.p2	AK014112|Fam101a|73121|family with sequence similarity 101, member A	BC053444|Fam101a|73121|family with sequence similarity 101, member A	NM_028443|Fam101a|73121|family with sequence similarity 101, member A
mm9_v1_chr11_+_61318701_61318705	0.0071898	bHLH_family.p2	BC008113|B9d1|27078|B9 protein domain 1
mm9_v1_chr11_+_119134231_119134236	0.00708365	bHLH_family.p2	AK192147|Gaa|14387|glucosidase, alpha, acid	AK197764|Gaa|14387|glucosidase, alpha, acid	AK210560|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr9_-_106378901_106379002	0.00692575	bHLH_family.p2	BC062204|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK044223|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK088125|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AF368233|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	NM_145619|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK145259|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr3_-_85946524_85946612	0.00686479	bHLH_family.p2	AK150796|Rps3a|20091|ribosomal protein S3A	AK151982|Rps3a|20091|ribosomal protein S3A	NM_016959|Rps3a|20091|ribosomal protein S3A
mm9_v1_chrX_+_133584130_133584209	0.00684996	bHLH_family.p2	AK154624|Fam199x|245622|family with sequence similarity 199, X-linked	NM_146261|Fam199x|245622|family with sequence similarity 199, X-linked	BC031748|Fam199x|245622|family with sequence similarity 199, X-linked	AK039695|Fam199x|245622|family with sequence similarity 199, X-linked
mm9_v1_chr1_+_174405490_174405627	0.00674786	bHLH_family.p2	NM_029612|Slamf9|98365|SLAM family member 9	AK090041|Slamf9|98365|SLAM family member 9	AK009505|Slamf9|98365|SLAM family member 9	BC019477|Slamf9|98365|SLAM family member 9	AB196824|Slamf9|98365|SLAM family member 9	AB196825|Slamf9|98365|SLAM family member 9	AB196826|Slamf9|98365|SLAM family member 9	AB196827|Slamf9|98365|SLAM family member 9
mm9_v1_chr7_+_151009071_151009071	0.0066864	bHLH_family.p2	AJ307059|Dhcr7|13360|7-dehydrocholesterol reductase	NM_007856|Dhcr7|13360|7-dehydrocholesterol reductase
mm9_v1_chr15_-_10415578_10415691	0.00666641	bHLH_family.p2	AK002985|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	BC014832|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	AK168325|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	AK088313|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)	NM_026396|Brix1|67832|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)
mm9_v1_chr6_-_124688630_124688780	0.00662223	bHLH_family.p2	AK150509|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6	AK132509|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6	NM_001077705|Ptpn6|15170|protein tyrosine phosphatase, non-receptor type 6
mm9_v1_chr8_-_87368790_87368860	0.00659917	bHLH_family.p2	
mm9_v1_chr18_+_50287848_50287993	0.00656411	bHLH_family.p2	AK004866|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK088381|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK147182|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK167060|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK166801|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK169077|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK152532|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK161655|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	BC022175|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	NM_008292|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	X89998|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4
mm9_v1_chr17_-_56857074_56857131	0.00653935	bHLH_family.p2	BC039944|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	BC058424|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	NM_001166474|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein
mm9_v1_chr3_+_97462134_97462247	0.00653134	bHLH_family.p2	BC060228|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit	NM_182997|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm9_v1_chr3_+_89324085_89324085	0.00643491	bHLH_family.p2	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr16_+_31428882_31428885	0.00640893	bHLH_family.p2	AK009575|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr8_-_127421561_127421610	0.00631781	bHLH_family.p2	BC057052|Exoc8|102058|exocyst complex component 8	NM_198103|Exoc8|102058|exocyst complex component 8
mm9_v1_chr11_-_69648350_69648356	0.00631318	bHLH_family.p2	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chr14_+_76510684_76510739	0.00625865	bHLH_family.p2	AK032324|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	NM_013745|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AK156205|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AK009260|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	BC020364|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	BC056192|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1	AF159549|Nufip1|27275|nuclear fragile X mental retardation protein interacting protein 1
mm9_v1_chr11_-_115209705_115209756	0.00615476	bHLH_family.p2	
mm9_v1_chr14_+_55087412_55087483	0.00604245	bHLH_family.p2	BC011058|Lrp10|65107|low-density lipoprotein receptor-related protein 10
mm9_v1_chr16_+_96689322_96689354	0.00603858	bHLH_family.p2	
mm9_v1_chr11_-_79067893_79067979	0.00602226	bHLH_family.p2	AF033186|Wsb1|78889|WD repeat and SOCS box-containing 1	BC053391|Wsb1|78889|WD repeat and SOCS box-containing 1
mm9_v1_chr4_+_137150067_137150162	0.00590495	bHLH_family.p2	AK166158|Usp48|170707|ubiquitin specific peptidase 48	NM_130879|Usp48|170707|ubiquitin specific peptidase 48	AK220190|Usp48|170707|ubiquitin specific peptidase 48	BC021769|Usp48|170707|ubiquitin specific peptidase 48	AK052297|Usp48|170707|ubiquitin specific peptidase 48
mm9_v1_chr4_-_132849266_132849290	0.00579361	bHLH_family.p2	AK195571|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr6_-_38204008_38204008	0.0057863	bHLH_family.p2	NM_194061|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr9_+_100978450_100978485	0.00556665	bHLH_family.p2	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr13_-_64471562_64471599	0.00550672	bHLH_family.p2	AF121837|Ctsl|13039|cathepsin L	AF121838|Ctsl|13039|cathepsin L	AF121839|Ctsl|13039|cathepsin L	J02583|Ctsl|13039|cathepsin L	BC068163|Ctsl|13039|cathepsin L	X06086|Ctsl|13039|cathepsin L
mm9_v1_chr9_+_56266618_56266679	0.00548099	bHLH_family.p2	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr17_+_25716140_25716151	0.00548002	bHLH_family.p2	AK172374|Lmf1|76483|lipase maturation factor 1	AK053241|Lmf1|76483|lipase maturation factor 1	AK142235|Lmf1|76483|lipase maturation factor 1	AK010312|Lmf1|76483|lipase maturation factor 1
mm9_v1_chr5_-_124545759_124545774	0.00537502	bHLH_family.p2	BC053014|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr11_+_67466129_67466154	0.005343	bHLH_family.p2	AK172943|Gas7|14457|growth arrest specific 7
mm9_v1_chr16_-_98072833_98072833	0.00533854	bHLH_family.p2	NM_144789|Prdm15|114604|PR domain containing 15
mm9_v1_chr10_+_41530379_41530379	0.00527789	bHLH_family.p2	BC100403|Sesn1|140742|sestrin 1	NM_001162908|Sesn1|140742|sestrin 1
mm9_v1_chr1_+_135260280_135260396	0.00526877	bHLH_family.p2	AK031665|Etnk2|214253|ethanolamine kinase 2	BC145351|Etnk2|214253|ethanolamine kinase 2
mm9_v1_chr12_+_118997623_118997625	0.00518744	bHLH_family.p2	AK134824|Rapgef5|217944|Rap guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr16_-_35490849_35490973	0.00516953	bHLH_family.p2	BC009151|Pdia5|72599|protein disulfide isomerase associated 5	NM_028295|Pdia5|72599|protein disulfide isomerase associated 5
mm9_v1_chr5_-_139606339_139606437	0.0050625	bHLH_family.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr2_+_58607580_58607600	0.00501011	bHLH_family.p2	AY152393|Upp2|76654|uridine phosphorylase 2	NM_029692|Upp2|76654|uridine phosphorylase 2	AK149444|Upp2|76654|uridine phosphorylase 2
mm9_v1_chr18_-_58369579_58369752	0.00500162	bHLH_family.p2	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chr7_-_4636519_4636597	0.00495489	bHLH_family.p2	AK088469|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	AK013263|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	BC014758|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	NM_024172|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm9_v1_chr4_-_43038575_43038674	0.00489369	bHLH_family.p2	AK220315|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC141058|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	AB038560|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	NM_020035|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC092394|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC036977|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	AK050819|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O
mm9_v1_chr11_+_102296557_102296682	0.0048898	bHLH_family.p2	AK212296|Grn|14824|granulin	AK181447|Grn|14824|granulin	AK184964|Grn|14824|granulin	AK187351|Grn|14824|granulin	AK190913|Grn|14824|granulin
mm9_v1_chr9_-_48719069_48719203	0.004869	bHLH_family.p2	AY605711|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	AF513221|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	X72395|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC144799|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC145743|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	M74425|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_001099644|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_013561|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A
mm9_v1_chr2_-_155463821_155463911	0.00478348	bHLH_family.p2	AK179051|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK190008|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK191521|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK192276|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK196821|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK197309|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK197593|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK197729|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK197922|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK198111|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK200382|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK201002|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK201068|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK201803|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK202669|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr15_-_76476688_76476767	0.00459478	bHLH_family.p2	AK028994|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chr8_+_112229987_112229987	0.00458789	bHLH_family.p2	BC059014|Zfp821|75871|zinc finger protein 821	NM_029468|Zfp821|75871|zinc finger protein 821
mm9_v1_chr2_-_11475504_11475547	0.00455339	bHLH_family.p2	AK143330|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr19_+_11986887_11986895	0.00448834	bHLH_family.p2	AK150301|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170918|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	NM_172635|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154102|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr9_-_75246118_75246213	0.00447789	bHLH_family.p2	BC048779|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr12_-_27100017_27100080	0.00442754	bHLH_family.p2	AK038586|Rnf144a|108089|ring finger protein 144A	BC030187|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr8_-_73046985_73047078	0.00440038	bHLH_family.p2	AK155003|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK013135|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK002695|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC048938|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC053944|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	NM_029366|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene
mm9_v1_chr17_-_46782935_46782980	0.00431093	bHLH_family.p2	BC005746|Klc4|74764|kinesin light chain 4	AK170793|Klc4|74764|kinesin light chain 4
mm9_v1_chr9_-_121701480_121701624	0.00426771	bHLH_family.p2	BC024464|Hhatl|74770|hedgehog acyltransferase-like	AK003605|Hhatl|74770|hedgehog acyltransferase-like	NM_029095|Hhatl|74770|hedgehog acyltransferase-like
mm9_v1_chr7_+_25155455_25155523	0.00421426	bHLH_family.p2	AB128930|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	AF072884|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	AK085752|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm9_v1_chr1_-_88479034_88479140	0.00421167	bHLH_family.p2	AF039216|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	BC005636|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	NM_008801|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	AK141209|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta	AK170067|Pde6d|18582|phosphodiesterase 6D, cGMP-specific, rod, delta
mm9_v1_chr6_+_35202672_35202740	0.00407836	bHLH_family.p2	AK171831|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK007895|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK155176|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK158055|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene	AK004512|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene
mm9_v1_chr2_-_17970075_17970075	0.00406824	bHLH_family.p2	BC050860|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene	NM_028317|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene
mm9_v1_chr6_-_88577424_88577443	0.00395997	bHLH_family.p2	AK014702|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_001142724|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_029013|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	AK016973|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12
mm9_v1_chr3_-_103545641_103545788	0.00387386	bHLH_family.p2	AK159746|Hipk1|15257|homeodomain interacting protein kinase 1	AK076611|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr11_+_83560497_83560515	0.00382586	bHLH_family.p2	AK003352|1100001G20Rik|66107|RIKEN cDNA 1100001G20 gene	AK003164|1100001G20Rik|66107|RIKEN cDNA 1100001G20 gene	BC096415|1100001G20Rik|66107|RIKEN cDNA 1100001G20 gene
mm9_v1_chr9_-_24956074_24956135	0.00373516	bHLH_family.p2	AB041580|Herpud2|80517|HERPUD family member 2
mm9_v1_chr5_+_123093892_123094082	0.00371467	bHLH_family.p2	AK144585|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_001038839|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_001038845|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_001038887|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	NM_011027|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AK171132|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC062808|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC141120|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AK145211|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AK145050|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AJ009823|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AJ489296|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	AJ489297|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC128303|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7	BC128304|P2rx7|18439|purinergic receptor P2X, ligand-gated ion channel, 7
mm9_v1_chr17_-_75951137_75951285	0.00348954	bHLH_family.p2	AK167224|Fam98a|72722|family with sequence similarity 98, member A	BC004626|Fam98a|72722|family with sequence similarity 98, member A	AK146955|Fam98a|72722|family with sequence similarity 98, member A	AK046481|Fam98a|72722|family with sequence similarity 98, member A	AK012997|Fam98a|72722|family with sequence similarity 98, member A	AK146215|Fam98a|72722|family with sequence similarity 98, member A	AK146761|Fam98a|72722|family with sequence similarity 98, member A	NM_133747|Fam98a|72722|family with sequence similarity 98, member A
mm9_v1_chr19_+_46764392_46764432	0.0034819	bHLH_family.p2	AK046524|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	NM_025563|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	AK008215|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	AK007626|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	BC027506|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene
mm9_v1_chr4_+_124707260_124707362	0.00347501	bHLH_family.p2	AK146404|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	BC003262|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	AK077532|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	AK037796|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)	U69600|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)
mm9_v1_chr8_+_73058795_73058894	0.00328836	bHLH_family.p2	AK189244|Fkbp8|14232|FK506 binding protein 8	AK188492|Fkbp8|14232|FK506 binding protein 8	AK190969|Fkbp8|14232|FK506 binding protein 8	AK205574|Fkbp8|14232|FK506 binding protein 8	AK212129|Fkbp8|14232|FK506 binding protein 8	AK207414|Fkbp8|14232|FK506 binding protein 8	AK192821|Fkbp8|14232|FK506 binding protein 8	AK208969|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr4_-_131481251_131481396	0.00325119	bHLH_family.p2	AK010038|Epb4.1|269587|erythrocyte protein band 4.1	AK213490|Epb4.1|269587|erythrocyte protein band 4.1	AK214122|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr18_-_35064624_35064726	0.00322813	bHLH_family.p2	AK195141|Etf1|225363|eukaryotic translation termination factor 1	AK218551|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr1_-_164790057_164790069	0.00321585	bHLH_family.p2	AK143940|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr14_-_32898727_32898850	0.00319479	bHLH_family.p2	AK048097|Dph3|105638|DPH3 homolog (KTI11, S. cerevisiae)	BC029910|Dph3|105638|DPH3 homolog (KTI11, S. cerevisiae)	BC039954|Dph3|105638|DPH3 homolog (KTI11, S. cerevisiae)	AK011448|Dph3|105638|DPH3 homolog (KTI11, S. cerevisiae)	AK017764|Dph3|105638|DPH3 homolog (KTI11, S. cerevisiae)	NM_001047433|Dph3|105638|DPH3 homolog (KTI11, S. cerevisiae)	NM_172254|Dph3|105638|DPH3 homolog (KTI11, S. cerevisiae)
mm9_v1_chr18_+_65183497_65183507	0.00311568	bHLH_family.p2	AK031842|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm9_v1_chrX_+_72627673_72627773	0.0030638	bHLH_family.p2	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr8_-_122159431_122159579	0.00306052	bHLH_family.p2	BC043936|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4	NM_025734|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4
mm9_v1_chr10_+_75994327_75994402	0.00299981	bHLH_family.p2	AK054393|Lss|16987|lanosterol synthase	AK141216|Lss|16987|lanosterol synthase	AK147680|Lss|16987|lanosterol synthase	AK154520|Lss|16987|lanosterol synthase	AK031271|Lss|16987|lanosterol synthase	AK044016|Lss|16987|lanosterol synthase	AK078023|Lss|16987|lanosterol synthase	BC029082|Lss|16987|lanosterol synthase	NM_146006|Lss|16987|lanosterol synthase
mm9_v1_chr19_+_47253657_47253740	0.00297527	bHLH_family.p2	AF400063|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr6_-_48790978_48791029	0.00279778	bHLH_family.p2	BC022166|Tmem176b|65963|transmembrane protein 176B	NM_023056|Tmem176b|65963|transmembrane protein 176B	AK007408|Tmem176b|65963|transmembrane protein 176B
mm9_v1_chr1_+_174012909_174013066	0.00265932	bHLH_family.p2	AK171625|Copa|12847|coatomer protein complex subunit alpha	AK043479|Copa|12847|coatomer protein complex subunit alpha	AK164910|Copa|12847|coatomer protein complex subunit alpha	BC047429|Copa|12847|coatomer protein complex subunit alpha	BC024070|Copa|12847|coatomer protein complex subunit alpha	AF248032|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr9_-_44187378_44187532	0.00265672	bHLH_family.p2	AK020500|9430081H08Rik|77430|RIKEN cDNA 9430081H08 gene	AK040656|9430081H08Rik|77430|RIKEN cDNA 9430081H08 gene
mm9_v1_chr6_-_99470949_99470986	0.00265085	bHLH_family.p2	AB594192|Foxp1|108655|forkhead box P1
mm9_v1_chr7_+_50817739_50817739	0.0026494	bHLH_family.p2	AK155078|Zfp658|210104|zinc finger protein 658	NM_001008549|Zfp658|210104|zinc finger protein 658
mm9_v1_chr5_+_135462204_135462439	0.00253713	bHLH_family.p2	AF095905|Cldn3|12739|claudin 3	BC012650|Cldn3|12739|claudin 3	AF087821|Cldn3|12739|claudin 3	BC023269|Cldn3|12739|claudin 3	AK165808|Cldn3|12739|claudin 3
mm9_v1_chr3_+_137940628_137940681	0.00240942	bHLH_family.p2	BC054467|Adh1|11522|alcohol dehydrogenase 1 (class I)
mm9_v1_chr7_-_140913846_140914017	0.00234011	bHLH_family.p2	BC024885|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm9_v1_chr12_-_88225200_88225353	0.00231197	bHLH_family.p2	BC057128|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	BC063253|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene
mm9_v1_chr6_+_29476655_29476748	0.00230916	bHLH_family.p2	AK150598|Irf5|27056|interferon regulatory factor 5	AK152042|Irf5|27056|interferon regulatory factor 5	AK171356|Irf5|27056|interferon regulatory factor 5	AK151019|Irf5|27056|interferon regulatory factor 5	AF028725|Irf5|27056|interferon regulatory factor 5	NM_012057|Irf5|27056|interferon regulatory factor 5
mm9_v1_chr2_+_35413977_35414092	0.00228368	bHLH_family.p2	NM_001114125|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	DQ473307|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr4_-_41586992_41587010	0.00225497	bHLH_family.p2	BC021944|Enho|69638|energy homeostasis associated
mm9_v1_chr11_-_98636689_98636697	0.0021265	bHLH_family.p2	AK154931|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK155597|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr14_-_119105434_119105469	0.00210263	bHLH_family.p2	NM_001033336|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	NM_001163676|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr6_+_4484651_4484672	0.00207759	bHLH_family.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr8_+_91045333_91045405	0.0020291	bHLH_family.p2	AF358134|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AF343352|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr11_-_86399926_86400010	0.00201357	bHLH_family.p2	AK217200|Tmem49|75909|transmembrane protein 49
mm9_v1_chr11_+_53583927_53584130	0.00199424	bHLH_family.p2	NM_001159396|Irf1|16362|interferon regulatory factor 1	BC003821|Irf1|16362|interferon regulatory factor 1
mm9_v1_chr4_+_139179011_139179044	0.00197794	bHLH_family.p2	AK044712|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1	BC039281|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr7_-_149276174_149276174	0.00195941	bHLH_family.p2	NM_008748|Dusp8|18218|dual specificity phosphatase 8	X95518|Dusp8|18218|dual specificity phosphatase 8
mm9_v1_chr5_+_111082466_111082502	0.00192962	bHLH_family.p2	NM_027156|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	AK141361|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	BC060646|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	AK152599|Ddx51|69663|DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
mm9_v1_chr2_-_92241282_92241326	0.00186269	bHLH_family.p2	AB221603|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF332075|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF332076|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109768|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr11_-_101755622_101755677	0.00181386	bHLH_family.p2	Z15103|Meox1|17285|mesenchyme homeobox 1	BC011082|Meox1|17285|mesenchyme homeobox 1	NM_010791|Meox1|17285|mesenchyme homeobox 1	AK052370|Meox1|17285|mesenchyme homeobox 1
mm9_v1_chr1_-_164790079_164790095	0.00181322	bHLH_family.p2	AK042457|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr9_+_114624257_114624316	0.0017829	bHLH_family.p2	AK205150|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK217382|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chr2_-_110203138_110203154	0.00175536	bHLH_family.p2	BC027250|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK003790|Fibin|67606|fin bud initiation factor homolog (zebrafish)	NM_026271|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr4_+_8533630_8533662	0.00175099	bHLH_family.p2	AK213817|Rab2a|59021|RAB2A, member RAS oncogene family	AK218701|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr2_+_119456102_119456195	0.00168062	bHLH_family.p2	BC009096|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr2_-_156138199_156138439	0.0016439	bHLH_family.p2	AK220179|Scand1|19018|SCAN domain-containing 1	BC010724|Scand1|19018|SCAN domain-containing 1	AF220501|Scand1|19018|SCAN domain-containing 1	AF106473|Scand1|19018|SCAN domain-containing 1	AK088253|Scand1|19018|SCAN domain-containing 1	AK009115|Scand1|19018|SCAN domain-containing 1	NM_020255|Scand1|19018|SCAN domain-containing 1
mm9_v1_chrX_-_143988623_143988623	0.00158452	bHLH_family.p2	NM_001081173|Lrch2|210297|leucine-rich repeats and calponin homology (CH) domain containing 2
mm9_v1_chr2_+_12845664_12845700	0.00155585	bHLH_family.p2	NM_008961|Pter|19212|phosphotriesterase related
mm9_v1_chr11_+_48615302_48615310	0.00141751	bHLH_family.p2	AK166889|Gnb2l1|14694|guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1
mm9_v1_chr9_+_81757308_81757350	0.00140835	bHLH_family.p2	BC096613|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK082395|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK166209|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	AK043929|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)	NM_175213|Mei4|75033|meiosis-specific, MEI4 homolog (S. cerevisiae)
mm9_v1_chr8_-_59029657_59029687	0.00139461	bHLH_family.p2	
mm9_v1_chrX_-_35988279_35988319	0.00136669	bHLH_family.p2	BC029909|C1galt1c1|59048|C1GALT1-specific chaperone 1	NM_021550|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr5_-_120935430_120935472	0.00132076	bHLH_family.p2	AK179951|Plbd2|71772|phospholipase B domain containing 2	AK214336|Plbd2|71772|phospholipase B domain containing 2	AK215411|Plbd2|71772|phospholipase B domain containing 2	AK216450|Plbd2|71772|phospholipase B domain containing 2	AK218751|Plbd2|71772|phospholipase B domain containing 2	AK219038|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr5_-_100812885_100812885	0.00129517	bHLH_family.p2	BC054358|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chr10_+_28749890_28749938	0.00124264	bHLH_family.p2	
mm9_v1_chr7_+_4094529_4094584	0.00119214	bHLH_family.p2	
mm9_v1_chr19_+_10059060_10059150	0.00118812	bHLH_family.p2	AK180886|Fth1|14319|ferritin heavy chain 1
mm9_v1_chr17_+_64950988_64951003	0.00111934	bHLH_family.p2	NM_008549|Man2a1|17158|mannosidase 2, alpha 1	X61172|Man2a1|17158|mannosidase 2, alpha 1	BC138371|Man2a1|17158|mannosidase 2, alpha 1	BC138372|Man2a1|17158|mannosidase 2, alpha 1
mm9_v1_chr17_+_26852700_26852741	0.0010716	bHLH_family.p2	BC113191|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	BC113192|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chrX_-_71032164_71032270	0.00107046	bHLH_family.p2	AK193262|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	AJ748655|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	AK166925|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	AK167131|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	BC085179|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	BC119170|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	BC119172|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	AK156309|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	AK168526|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	NM_008323|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma	U68564|Idh3g|15929|isocitrate dehydrogenase 3 (NAD+), gamma
mm9_v1_chr11_+_78640059_78640096	0.00105764	bHLH_family.p2	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr12_+_73885063_73885417	0.00104369	bHLH_family.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr12_-_76770488_76770523	0.00102569	bHLH_family.p2	BC111903|Wdr89|72338|WD repeat domain 89	BC112430|Wdr89|72338|WD repeat domain 89	AK011125|Wdr89|72338|WD repeat domain 89	NM_028203|Wdr89|72338|WD repeat domain 89
mm9_v1_chr9_+_91263809_91263809	0.000968534	bHLH_family.p2	AK046913|Zic4|22774|zinc finger protein of the cerebellum 4	NM_009576|Zic4|22774|zinc finger protein of the cerebellum 4
mm9_v1_chr8_-_67171481_67171562	0.000930478	bHLH_family.p2	AK002935|Cpe|12876|carboxypeptidase E	AK013509|Cpe|12876|carboxypeptidase E
mm9_v1_chr11_-_3429909_3429923	0.000923611	bHLH_family.p2	AK160492|Smtn|29856|smoothelin
mm9_v1_chr5_+_124990703_124991022	0.000906759	bHLH_family.p2	BC131977|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC138294|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC083140|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	NM_019770|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK089965|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AB025218|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK179651|Tmed2|56334|transmembrane emp24 domain trafficking protein 2
mm9_v1_chr16_+_49699314_49699432	0.000904839	bHLH_family.p2	DQ266091|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AF274590|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AK047217|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	NM_028680|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	AK014731|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	BC138143|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)	BC138144|Ift57|73916|intraflagellar transport 57 homolog (Chlamydomonas)
mm9_v1_chr3_+_41368846_41368849	0.000891051	bHLH_family.p2	AK129445|Phf17|269424|PHD finger protein 17
mm9_v1_chr15_-_44946368_44946387	0.00087781	bHLH_family.p2	BC117819|Kcnv1|67498|potassium channel, subfamily V, member 1	BC128477|Kcnv1|67498|potassium channel, subfamily V, member 1	BC128478|Kcnv1|67498|potassium channel, subfamily V, member 1	AK034091|Kcnv1|67498|potassium channel, subfamily V, member 1
mm9_v1_chr6_-_146450399_146450533	0.000816697	bHLH_family.p2	AB012393|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2	GU980658|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2	AB182288|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2	AB182290|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2	NM_010586|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2	NM_019923|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2
mm9_v1_chr1_+_75435521_75435559	0.000793055	bHLH_family.p2	AK189243|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr6_-_85819035_85819112	0.000760963	bHLH_family.p2	AK050449|Cml2|93673|camello-like 2	AF163315|Cml2|93673|camello-like 2
mm9_v1_chr6_+_28373521_28373688	0.000726154	bHLH_family.p2	BC132452|Arf5|11844|ADP-ribosylation factor 5	BC138756|Arf5|11844|ADP-ribosylation factor 5	D87902|Arf5|11844|ADP-ribosylation factor 5	NM_007480|Arf5|11844|ADP-ribosylation factor 5
mm9_v1_chr19_-_11893210_11893323	0.000663501	bHLH_family.p2	D38375|Stx3|20908|syntaxin 3	D29800|Stx3|20908|syntaxin 3	AK170105|Stx3|20908|syntaxin 3	BC024844|Stx3|20908|syntaxin 3	D29797|Stx3|20908|syntaxin 3	D29798|Stx3|20908|syntaxin 3
mm9_v1_chr15_-_79656745_79656946	0.000645594	bHLH_family.p2	AK162544|Cbx6|494448|chromobox homolog 6	AK202886|Cbx6|494448|chromobox homolog 6	AK207037|Cbx6|494448|chromobox homolog 6	AK218930|Cbx6|494448|chromobox homolog 6
mm9_v1_chr19_-_44144175_44144240	0.000635672	bHLH_family.p2	NM_145502|Erlin1|226144|ER lipid raft associated 1	BC021793|Erlin1|226144|ER lipid raft associated 1	BC011220|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr10_-_33816255_33816324	0.000540121	bHLH_family.p2	AK161070|Fam26e|103511|family with sequence similarity 26, member E	AK052861|Fam26e|103511|family with sequence similarity 26, member E	AK078850|Fam26e|103511|family with sequence similarity 26, member E	BC025893|Fam26e|103511|family with sequence similarity 26, member E	AK085925|Fam26e|103511|family with sequence similarity 26, member E	NM_178908|Fam26e|103511|family with sequence similarity 26, member E
mm9_v1_chr2_+_164716626_164716724	0.000532416	bHLH_family.p2	
mm9_v1_chr11_-_100334035_100334069	0.000454721	bHLH_family.p2	AK169910|Klhl11|217194|kelch-like 11 (Drosophila)
mm9_v1_chr5_+_35384213_35384292	0.000372229	bHLH_family.p2	AK165433|Hgfac|54426|hepatocyte growth factor activator	AK144554|Hgfac|54426|hepatocyte growth factor activator	BC019376|Hgfac|54426|hepatocyte growth factor activator	AK149522|Hgfac|54426|hepatocyte growth factor activator	AF099017|Hgfac|54426|hepatocyte growth factor activator	AF224724|Hgfac|54426|hepatocyte growth factor activator	AK075718|Hgfac|54426|hepatocyte growth factor activator
mm9_v1_chr10_+_59754384_59754499	0.000361031	bHLH_family.p2	AK159622|Psap|19156|prosaposin	AK210181|Psap|19156|prosaposin	BC036266|Psap|19156|prosaposin	AK180106|Psap|19156|prosaposin	AK194829|Psap|19156|prosaposin	AK197804|Psap|19156|prosaposin	AK201095|Psap|19156|prosaposin	AK203509|Psap|19156|prosaposin
mm9_v1_chr18_-_38158371_38158561	0.000354296	bHLH_family.p2	AK036638|Arap3|106952|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	AF469622|Arap3|106952|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
mm9_v1_chr2_+_167340686_167340879	0.000337005	bHLH_family.p2	BC019989|Rnf114|81018|ring finger protein 114	AK216194|Rnf114|81018|ring finger protein 114	AK003584|Rnf114|81018|ring finger protein 114
mm9_v1_chr6_-_124729735_124729744	0.000331417	bHLH_family.p2	NM_013588|Lrrc23|16977|leucine rich repeat containing 23	AK015011|Lrrc23|16977|leucine rich repeat containing 23	BC049601|Lrrc23|16977|leucine rich repeat containing 23
mm9_v1_chr5_-_123183255_123183351	0.000308711	bHLH_family.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr11_-_115569734_115569779	0.000267781	bHLH_family.p2	AK196759|Grb2|14784|growth factor receptor bound protein 2	BC085254|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr2_-_148269170_148269322	0.000244985	bHLH_family.p2	AK155060|Cd93|17064|CD93 antigen	AK079060|Cd93|17064|CD93 antigen	NM_010740|Cd93|17064|CD93 antigen	AF081789|Cd93|17064|CD93 antigen	AK028485|Cd93|17064|CD93 antigen
mm9_v1_chr9_+_27106856_27107004	0.000237539	bHLH_family.p2	BC150882|Igsf9b|235086|immunoglobulin superfamily, member 9B	BC150887|Igsf9b|235086|immunoglobulin superfamily, member 9B
mm9_v1_chr11_+_81859212_81859265	0.000195558	bHLH_family.p2	NM_013654|Ccl7|20306|chemokine (C-C motif) ligand 7	AK078827|Ccl7|20306|chemokine (C-C motif) ligand 7	BC061126|Ccl7|20306|chemokine (C-C motif) ligand 7	S71251|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128193|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128194|Ccl7|20306|chemokine (C-C motif) ligand 7	L04694|Ccl7|20306|chemokine (C-C motif) ligand 7	S50588|Ccl7|20306|chemokine (C-C motif) ligand 7	Z12297|Ccl7|20306|chemokine (C-C motif) ligand 7
mm9_v1_chr13_+_49600158_49600323	0.000147851	bHLH_family.p2	AK040995|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC089559|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	NM_001012324|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK134746|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK163501|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC056468|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	BC065151|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific	AK038812|Ecm2|407800|extracellular matrix protein 2, female organ and adipocyte specific
mm9_v1_chr7_+_148656076_148656334	9.6762e-05	bHLH_family.p2	AK179527|Cd151|12476|CD151 antigen	AK210628|Cd151|12476|CD151 antigen
mm9_v1_chr18_+_54113094_54113152	9.2669e-05	bHLH_family.p2	AJ279839|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr7_+_28390872_28390878	9.20591e-05	bHLH_family.p2	BC026151|Akt2|11652|thymoma viral proto-oncogene 2	NM_007434|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr9_-_44226073_44226112	7.97346e-05	bHLH_family.p2	BC096560|Ccdc84|382073|coiled-coil domain containing 84	BC055929|Ccdc84|382073|coiled-coil domain containing 84	NM_201372|Ccdc84|382073|coiled-coil domain containing 84	AK171754|Ccdc84|382073|coiled-coil domain containing 84	AK052757|Ccdc84|382073|coiled-coil domain containing 84	BC116877|Ccdc84|382073|coiled-coil domain containing 84	BC116879|Ccdc84|382073|coiled-coil domain containing 84	BC144712|Ccdc84|382073|coiled-coil domain containing 84	BC144713|Ccdc84|382073|coiled-coil domain containing 84
mm9_v1_chr15_+_82005685_82005731	7.22763e-05	bHLH_family.p2	AK197179|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr8_-_72433344_72433376	2.12329e-06	bHLH_family.p2	AK004386|Gatad2a|234366|GATA zinc finger domain containing 2A
