mm9_v1_chr9_-_70269326_70269397	1.19791	FOXP3.p2	AK013312|Ccnb2|12442|cyclin B2	X66032|Ccnb2|12442|cyclin B2	AK076122|Ccnb2|12442|cyclin B2	NM_007630|Ccnb2|12442|cyclin B2
mm9_v1_chr11_+_29618696_29618843	1.13385	FOXP3.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr4_-_49562319_49562386	1.00428	FOXP3.p2	BC026577|Aldob|230163|aldolase B, fructose-bisphosphate	BC034172|Aldob|230163|aldolase B, fructose-bisphosphate	BC034173|Aldob|230163|aldolase B, fructose-bisphosphate	BC022113|Aldob|230163|aldolase B, fructose-bisphosphate	BC034171|Aldob|230163|aldolase B, fructose-bisphosphate	BC036130|Aldob|230163|aldolase B, fructose-bisphosphate	BC016435|Aldob|230163|aldolase B, fructose-bisphosphate	BC036131|Aldob|230163|aldolase B, fructose-bisphosphate	BC036132|Aldob|230163|aldolase B, fructose-bisphosphate	BC036133|Aldob|230163|aldolase B, fructose-bisphosphate	NM_144903|Aldob|230163|aldolase B, fructose-bisphosphate	BC030724|Aldob|230163|aldolase B, fructose-bisphosphate	BC024112|Aldob|230163|aldolase B, fructose-bisphosphate	BC024056|Aldob|230163|aldolase B, fructose-bisphosphate	BC030725|Aldob|230163|aldolase B, fructose-bisphosphate	BC034169|Aldob|230163|aldolase B, fructose-bisphosphate	AK149598|Aldob|230163|aldolase B, fructose-bisphosphate	AK167566|Aldob|230163|aldolase B, fructose-bisphosphate	AK168600|Aldob|230163|aldolase B, fructose-bisphosphate	AK149395|Aldob|230163|aldolase B, fructose-bisphosphate	AK167334|Aldob|230163|aldolase B, fructose-bisphosphate	AK135385|Aldob|230163|aldolase B, fructose-bisphosphate
mm9_v1_chrX_+_133357268_133357438	0.717476	FOXP3.p2	AK160872|Plp1|18823|proteolipid protein (myelin) 1	AK134554|Plp1|18823|proteolipid protein (myelin) 1	M15442|Plp1|18823|proteolipid protein (myelin) 1	AK077564|Plp1|18823|proteolipid protein (myelin) 1	BC027010|Plp1|18823|proteolipid protein (myelin) 1	NM_011123|Plp1|18823|proteolipid protein (myelin) 1	AK192772|Plp1|18823|proteolipid protein (myelin) 1	AK203421|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr9_-_70269246_70269297	0.696138	FOXP3.p2	CT010286|Ccnb2|12442|cyclin B2	BC008247|Ccnb2|12442|cyclin B2
mm9_v1_chr1_-_152840432_152840584	0.673453	FOXP3.p2	BC147549|Hmcn1|545370|hemicentin 1	BC147568|Hmcn1|545370|hemicentin 1	AK052713|Hmcn1|545370|hemicentin 1	NM_001024720|Hmcn1|545370|hemicentin 1
mm9_v1_chr7_-_111001598_111001720	0.592244	FOXP3.p2	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr8_-_54724277_54724418	0.533188	FOXP3.p2	BC024921|Neil3|234258|nei like 3 (E. coli)	AB072931|Neil3|234258|nei like 3 (E. coli)	AK031027|Neil3|234258|nei like 3 (E. coli)	BC034753|Neil3|234258|nei like 3 (E. coli)	NM_146208|Neil3|234258|nei like 3 (E. coli)
mm9_v1_chr10_-_6011993_6012000	0.511778	FOXP3.p2	
mm9_v1_chr1_+_162917586_162917638	0.422986	FOXP3.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr8_-_73316331_73316346	0.346235	FOXP3.p2	NM_199308|Mast3|546071|microtubule associated serine/threonine kinase 3	AK140821|Mast3|546071|microtubule associated serine/threonine kinase 3
mm9_v1_chr1_-_165243777_165243829	0.324638	FOXP3.p2	NM_001025570|Prrx1|18933|paired related homeobox 1	NM_011127|Prrx1|18933|paired related homeobox 1	NM_175686|Prrx1|18933|paired related homeobox 1	U03873|Prrx1|18933|paired related homeobox 1	AK084387|Prrx1|18933|paired related homeobox 1	AK029347|Prrx1|18933|paired related homeobox 1
mm9_v1_chr11_+_71855939_71856013	0.323353	FOXP3.p2	AK011345|Fam64a|109212|family with sequence similarity 64, member A	AK049710|Fam64a|109212|family with sequence similarity 64, member A	AK078429|Fam64a|109212|family with sequence similarity 64, member A	NM_144526|Fam64a|109212|family with sequence similarity 64, member A	BC020115|Fam64a|109212|family with sequence similarity 64, member A	BC029115|Fam64a|109212|family with sequence similarity 64, member A
mm9_v1_chr18_-_15562126_15562266	0.258992	FOXP3.p2	AK044074|Aqp4|11829|aquaporin 4	BC024526|Aqp4|11829|aquaporin 4	NM_009700|Aqp4|11829|aquaporin 4	AF469168|Aqp4|11829|aquaporin 4
mm9_v1_chr8_-_112102961_112102972	0.229176	FOXP3.p2	AK159676|Hp|15439|haptoglobin	S67972|Hp|15439|haptoglobin	AK150430|Hp|15439|haptoglobin	AK150830|Hp|15439|haptoglobin	AK152295|Hp|15439|haptoglobin	AK152698|Hp|15439|haptoglobin
mm9_v1_chr1_+_162917640_162917674	0.187485	FOXP3.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr10_-_94786634_94786766	0.158792	FOXP3.p2	AK052304|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK136561|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AJ224738|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	NM_009950|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK163112|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK144648|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain
mm9_v1_chr10_+_25079661_25079716	0.156045	FOXP3.p2	AK170275|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	AK167434|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	BC023768|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	AK052475|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2
mm9_v1_chr15_-_96861590_96861647	0.138405	FOXP3.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr7_-_52359079_52359191	0.13532	FOXP3.p2	BC003786|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	D37874|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK152879|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK146933|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008167|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008360|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	NM_010189|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter
mm9_v1_chr4_-_151665770_151665770	0.132372	FOXP3.p2	AK090218|Hes3|15207|hairy and enhancer of split 3 (Drosophila)	NM_008237|Hes3|15207|hairy and enhancer of split 3 (Drosophila)
mm9_v1_chr16_-_11909420_11909546	0.126037	FOXP3.p2	BC025476|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029379|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK032288|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK041329|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	BC034347|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK133977|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK080876|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK049721|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK134718|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	NM_146067|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1	AK029442|Cpped1|223978|calcineurin-like phosphoesterase domain containing 1
mm9_v1_chr19_+_4711220_4711230	0.125831	FOXP3.p2	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr19_+_20676453_20676504	0.119693	FOXP3.p2	M74570|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC044729|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC054386|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	NM_013467|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC035322|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	S75713|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1
mm9_v1_chr19_+_30307417_30307431	0.112718	FOXP3.p2	AK149484|Mbl2|17195|mannose-binding lectin (protein C) 2	S42294|Mbl2|17195|mannose-binding lectin (protein C) 2	BC010760|Mbl2|17195|mannose-binding lectin (protein C) 2
mm9_v1_chr19_+_8913817_8913862	0.111897	FOXP3.p2	AK158901|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	NM_008144|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	BC060048|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr16_+_17331463_17331501	0.0996025	FOXP3.p2	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr15_-_88808967_88808984	0.0961799	FOXP3.p2	AK030396|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	AK043757|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	BC024719|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	NM_133241|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm9_v1_chr1_-_175810248_175810365	0.0916679	FOXP3.p2	AK136391|Mndal|100040462|myeloid nuclear differentiation antigen like	NM_001170853|Mndal|100040462|myeloid nuclear differentiation antigen like
mm9_v1_chr16_+_49913305_49913369	0.0863454	FOXP3.p2	AK050387|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr11_+_29618531_29618569	0.0857972	FOXP3.p2	NM_024226|Rtn4|68585|reticulon 4	AY102283|Rtn4|68585|reticulon 4
mm9_v1_chr8_+_12984287_12984308	0.0843258	FOXP3.p2	AK147252|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr16_+_17331507_17331521	0.0833913	FOXP3.p2	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr8_-_94879643_94879671	0.0829031	FOXP3.p2	AK181465|4933436C20Rik|71296|RIKEN cDNA 4933436C20 gene
mm9_v1_chr4_-_136448748_136448871	0.077291	FOXP3.p2	X66295|C1qc|12262|complement component 1, q subcomponent, C chain	BC069926|C1qc|12262|complement component 1, q subcomponent, C chain	BC054443|C1qc|12262|complement component 1, q subcomponent, C chain	BC075724|C1qc|12262|complement component 1, q subcomponent, C chain	BC043945|C1qc|12262|complement component 1, q subcomponent, C chain	AK138974|C1qc|12262|complement component 1, q subcomponent, C chain	NM_007574|C1qc|12262|complement component 1, q subcomponent, C chain
mm9_v1_chr5_-_138362822_138362852	0.0705176	FOXP3.p2	X63023|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	BC046592|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136494|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136529|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK149572|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	NM_007819|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13
mm9_v1_chr3_-_126701367_126701380	0.0694947	FOXP3.p2	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chrX_+_155897056_155897081	0.067796	FOXP3.p2	AK019929|Mtap7d2|78283|MAP7 domain containing 2	AK031868|Mtap7d2|78283|MAP7 domain containing 2	AK043342|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr19_+_8667671_8667730	0.0661089	FOXP3.p2	NM_001164635|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK157891|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	BC014762|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK044336|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AF078869|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8
mm9_v1_chr11_+_115891591_115891668	0.0574347	FOXP3.p2	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr15_-_98568883_98568907	0.0555332	FOXP3.p2	
mm9_v1_chr17_-_46841851_46841924	0.0549115	FOXP3.p2	BC010716|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AY338234|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AK160587|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AB053464|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr7_+_148021503_148021519	0.0541345	FOXP3.p2	DQ225768|1190003J15Rik|76974|RIKEN cDNA 1190003J15 gene
mm9_v1_chr7_-_108112785_108112972	0.0529451	FOXP3.p2	AX775901|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	BC064095|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	BC027331|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK008436|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK008496|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	NM_183168|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK142680|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm9_v1_chr11_-_86399926_86400010	0.0521902	FOXP3.p2	AK217200|Tmem49|75909|transmembrane protein 49
mm9_v1_chr14_+_56223001_56223063	0.0509763	FOXP3.p2	U51992|Irf9|16391|interferon regulatory factor 9	BC005435|Irf9|16391|interferon regulatory factor 9
mm9_v1_chr1_+_173180542_173180557	0.0483701	FOXP3.p2	AK028364|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK083534|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	NM_172845|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK157287|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK164900|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm9_v1_chr5_+_125365789_125365870	0.0474485	FOXP3.p2	BC096550|Zfp664|269704|zinc finger protein 664
mm9_v1_chr4_-_46416895_46416973	0.0467216	FOXP3.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr6_-_108135548_108135588	0.0442857	FOXP3.p2	BC026981|Sumf1|58911|sulfatase modifying factor 1	AK160917|Sumf1|58911|sulfatase modifying factor 1	AK159192|Sumf1|58911|sulfatase modifying factor 1	AK161203|Sumf1|58911|sulfatase modifying factor 1	AK151874|Sumf1|58911|sulfatase modifying factor 1	NM_145937|Sumf1|58911|sulfatase modifying factor 1
mm9_v1_chr15_+_58770843_58770951	0.0411924	FOXP3.p2	AJ300739|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm9_v1_chr6_-_129422702_129422806	0.0402341	FOXP3.p2	AY534909|Clec7a|56644|C-type lectin domain family 7, member a	BC027742|Clec7a|56644|C-type lectin domain family 7, member a	AF262985|Clec7a|56644|C-type lectin domain family 7, member a	NM_020008|Clec7a|56644|C-type lectin domain family 7, member a
mm9_v1_chr6_+_48626133_48626222	0.0399546	FOXP3.p2	NM_174960|Gimap9|317758|GTPase, IMAP family member 9	AK041336|Gimap9|317758|GTPase, IMAP family member 9	BC096680|Gimap9|317758|GTPase, IMAP family member 9	BC038043|Gimap9|317758|GTPase, IMAP family member 9
mm9_v1_chr14_-_66696533_66696571	0.0395624	FOXP3.p2	AK161261|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK161266|Adam2|11495|a disintegrin and metallopeptidase domain 2	U16242|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK016550|Adam2|11495|a disintegrin and metallopeptidase domain 2	NM_009618|Adam2|11495|a disintegrin and metallopeptidase domain 2	U38806|Adam2|11495|a disintegrin and metallopeptidase domain 2
mm9_v1_chr5_-_92378648_92378678	0.0384953	FOXP3.p2	AK007543|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr11_+_54683866_54683920	0.0380781	FOXP3.p2	
mm9_v1_chr15_-_71864639_71864656	0.0371497	FOXP3.p2	NM_027174|Col22a1|69700|collagen, type XXII, alpha 1
mm9_v1_chr3_+_134944239_134944255	0.0369252	FOXP3.p2	BC036998|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr7_-_112292815_112292822	0.036794	FOXP3.p2	BC111830|Olfr683|259047|olfactory receptor 683	BC148203|Olfr683|259047|olfactory receptor 683	NM_147045|Olfr683|259047|olfactory receptor 683
mm9_v1_chr7_-_148068161_148068207	0.0360411	FOXP3.p2	AF299338|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)	NM_022433|Sirt3|64384|sirtuin 3 (silent mating type information regulation 2, homolog) 3 (S. cerevisiae)
mm9_v1_chr15_+_66723067_66723074	0.0358894	FOXP3.p2	AF100777|Wisp1|22402|WNT1 inducible signaling pathway protein 1
mm9_v1_chr16_-_23029154_23029175	0.0353976	FOXP3.p2	NM_001102409|Kng2|385643|kininogen 2	NM_001102410|Kng2|385643|kininogen 2	NM_201375|Kng2|385643|kininogen 2
mm9_v1_chr12_+_17284028_17284034	0.0343466	FOXP3.p2	AK180230|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr11_+_115891682_115891695	0.0334838	FOXP3.p2	BC054452|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr1_-_65169708_65169766	0.0313927	FOXP3.p2	AK164708|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	BC137870|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	AK085417|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	NM_175293|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene
mm9_v1_chr9_+_106724228_106724306	0.0310911	FOXP3.p2	BC065119|Vprbp|321006|Vpr (HIV-1) binding protein	NM_001015507|Vprbp|321006|Vpr (HIV-1) binding protein
mm9_v1_chrX_-_16488889_16488889	0.0308092	FOXP3.p2	BC090623|Ndp|17986|Norrie disease (pseudoglioma) (human)	NM_010883|Ndp|17986|Norrie disease (pseudoglioma) (human)
mm9_v1_chr17_-_32351597_32351614	0.0301095	FOXP3.p2	
mm9_v1_chrM_+_3913_4410	0.0300306	FOXP3.p2	
mm9_v1_chr19_+_47806216_47806291	0.0294573	FOXP3.p2	AK011531|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	NM_026377|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK078147|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK004073|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK146810|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	BC024403|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AB597963|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK016079|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK014266|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK077875|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK168427|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK167406|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK168068|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK217479|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene
mm9_v1_chr1_-_179178874_179178897	0.029346	FOXP3.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr4_+_57907032_57907040	0.028849	FOXP3.p2	AK086796|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr14_-_122364309_122364416	0.0283762	FOXP3.p2	BC052868|Gpr183|321019|G protein-coupled receptor 183	AK141593|Gpr183|321019|G protein-coupled receptor 183	AK153216|Gpr183|321019|G protein-coupled receptor 183	AK087951|Gpr183|321019|G protein-coupled receptor 183	AK156005|Gpr183|321019|G protein-coupled receptor 183	AK156289|Gpr183|321019|G protein-coupled receptor 183	NM_183031|Gpr183|321019|G protein-coupled receptor 183	AK138693|Gpr183|321019|G protein-coupled receptor 183
mm9_v1_chr1_+_140860285_140860402	0.0281852	FOXP3.p2	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr10_-_88996314_88996370	0.0279212	FOXP3.p2	U09417|Nr1h4|20186|nuclear receptor subfamily 1, group H, member 4	NM_001163504|Nr1h4|20186|nuclear receptor subfamily 1, group H, member 4
mm9_v1_chrM_-_13886_13905	0.0275009	FOXP3.p2	
mm9_v1_chr4_-_57929087_57929168	0.0251185	FOXP3.p2	BC030929|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	AK085537|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	BC095953|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	NM_178727|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	AK035369|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene
mm9_v1_chr10_-_80179273_80179305	0.0235247	FOXP3.p2	AK186188|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr19_+_23240506_23240595	0.0215941	FOXP3.p2	AK187278|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr8_+_89240252_89240401	0.0213652	FOXP3.p2	AK197630|Lonp2|66887|lon peptidase 2, peroxisomal
mm9_v1_chr19_-_39537540_39537568	0.0205294	FOXP3.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr16_-_52268571_52268603	0.0202347	FOXP3.p2	AK161090|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr2_+_92061718_92061757	0.0193118	FOXP3.p2	NM_001109690|Phf21a|192285|PHD finger protein 21A	AK137085|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr16_-_89488129_89488198	0.0184524	FOXP3.p2	D86423|Krtap8-1|16703|keratin associated protein 8-1	AK133727|Krtap8-1|16703|keratin associated protein 8-1	NM_010675|Krtap8-1|16703|keratin associated protein 8-1
mm9_v1_chr11_-_78564918_78565234	0.0182451	FOXP3.p2	AY445047|Fam58b|69109|family with sequence similarity 58, member B	AK007413|Fam58b|69109|family with sequence similarity 58, member B	AK032408|Fam58b|69109|family with sequence similarity 58, member B	BC027022|Fam58b|69109|family with sequence similarity 58, member B	NM_197989|Fam58b|69109|family with sequence similarity 58, member B
mm9_v1_chr10_+_97028456_97028463	0.0178077	FOXP3.p2	BC005550|Lum|17022|lumican	S79461|Lum|17022|lumican
mm9_v1_chr10_+_23614493_23614678	0.0175786	FOXP3.p2	NM_011704|Vnn1|22361|vanin 1	AK145984|Vnn1|22361|vanin 1	AK002773|Vnn1|22361|vanin 1	AK167427|Vnn1|22361|vanin 1	AJ132098|Vnn1|22361|vanin 1	BC019203|Vnn1|22361|vanin 1
mm9_v1_chr16_-_59027730_59027752	0.0172325	FOXP3.p2	NM_146321|Olfr186|258318|olfactory receptor 186	BC150713|Olfr186|258318|olfactory receptor 186
mm9_v1_chr2_-_65201979_65202090	0.0160781	FOXP3.p2	AK041015|Slc38a11|320106|solute carrier family 38, member 11	AK139966|Slc38a11|320106|solute carrier family 38, member 11	NM_177074|Slc38a11|320106|solute carrier family 38, member 11	AK034126|Slc38a11|320106|solute carrier family 38, member 11	AK043610|Slc38a11|320106|solute carrier family 38, member 11
mm9_v1_chr4_-_14548903_14548926	0.015946	FOXP3.p2	BC026928|Slc26a7|208890|solute carrier family 26, member 7	AK054327|Slc26a7|208890|solute carrier family 26, member 7	NM_145947|Slc26a7|208890|solute carrier family 26, member 7
mm9_v1_chr17_+_24078962_24078969	0.0154155	FOXP3.p2	BC049605|Sbp|20234|spermine binding protein	NM_011321|Sbp|20234|spermine binding protein	X06246|Sbp|20234|spermine binding protein
mm9_v1_chr5_+_34974750_34974884	0.0153847	FOXP3.p2	
mm9_v1_chr10_+_98478207_98478246	0.0142462	FOXP3.p2	BC025199|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr11_-_101755622_101755677	0.0133923	FOXP3.p2	Z15103|Meox1|17285|mesenchyme homeobox 1	BC011082|Meox1|17285|mesenchyme homeobox 1	NM_010791|Meox1|17285|mesenchyme homeobox 1	AK052370|Meox1|17285|mesenchyme homeobox 1
mm9_v1_chr3_-_15332301_15332301	0.0128593	FOXP3.p2	DQ055452|Gm9733|751864|predicted gene 9733	NM_001076679|Gm9733|751864|predicted gene 9733
mm9_v1_chr3_-_141645214_141645214	0.0128209	FOXP3.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr14_-_31981750_31981759	0.0127233	FOXP3.p2	AF290914|Stab1|192187|stabilin 1	BC058607|Stab1|192187|stabilin 1
mm9_v1_chr10_+_25079603_25079644	0.0126144	FOXP3.p2	AK144088|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2
mm9_v1_chr15_-_66392539_66392625	0.0125262	FOXP3.p2	BC117823|Tmem71|213068|transmembrane protein 71	BC117824|Tmem71|213068|transmembrane protein 71	AK170268|Tmem71|213068|transmembrane protein 71	AK088711|Tmem71|213068|transmembrane protein 71	NM_172514|Tmem71|213068|transmembrane protein 71
mm9_v1_chr8_-_55606109_55606134	0.0122211	FOXP3.p2	AK051731|Spcs3|76687|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm9_v1_chr18_-_12978106_12978267	0.0118943	FOXP3.p2	BC057194|Osbpl1a|64291|oxysterol binding protein-like 1A	AF394063|Osbpl1a|64291|oxysterol binding protein-like 1A	AK133806|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr2_-_28321788_28321851	0.0118871	FOXP3.p2	AY927869|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	BC048581|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	BC099566|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	NM_027040|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene	AK005731|1700007K13Rik|69327|RIKEN cDNA 1700007K13 gene
mm9_v1_chr2_-_72931338_72931457	0.0118855	FOXP3.p2	
mm9_v1_chr6_-_5248235_5248333	0.01133	FOXP3.p2	BC037140|Pon2|330260|paraoxonase 2	L48514|Pon2|330260|paraoxonase 2	AK152351|Pon2|330260|paraoxonase 2	AK171926|Pon2|330260|paraoxonase 2	BC021887|Pon2|330260|paraoxonase 2
mm9_v1_chr4_+_155384040_155384070	0.0112257	FOXP3.p2	AK198663|Sdf4|20318|stromal cell derived factor 4
mm9_v1_chr3_-_57105840_57105943	0.0108467	FOXP3.p2	BC083073|Tm4sf1|17112|transmembrane 4 superfamily member 1	NM_008536|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK134603|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr1_-_39608846_39608882	0.0102864	FOXP3.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr16_-_44114803_44114836	0.00934183	FOXP3.p2	AK181657|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr4_-_134081867_134082196	0.00929535	FOXP3.p2	AK196748|Fam54b|76824|family with sequence similarity 54, member B	AK205711|Fam54b|76824|family with sequence similarity 54, member B	AK194688|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr3_-_37024751_37024880	0.00902943	FOXP3.p2	U41504|Il2|16183|interleukin 2	DQ836354|Il2|16183|interleukin 2	U41494|Il2|16183|interleukin 2	U41505|Il2|16183|interleukin 2	U41506|Il2|16183|interleukin 2	AY147902|Il2|16183|interleukin 2	X66058|Il2|16183|interleukin 2	AF065914|Il2|16183|interleukin 2	AF065915|Il2|16183|interleukin 2	AF065916|Il2|16183|interleukin 2	BC116845|Il2|16183|interleukin 2	BC116873|Il2|16183|interleukin 2	X01772|Il2|16183|interleukin 2	X73040|Il2|16183|interleukin 2	K02292|Il2|16183|interleukin 2	NM_008366|Il2|16183|interleukin 2	AF538059|Il2|16183|interleukin 2	AF542383|Il2|16183|interleukin 2	AF542384|Il2|16183|interleukin 2	AF542385|Il2|16183|interleukin 2
mm9_v1_chr1_-_99024782_99024879	0.00886248	FOXP3.p2	BC139066|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	BC139067|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK132668|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK161249|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK016647|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK029505|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	NM_028942|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1
mm9_v1_chr6_-_38077491_38077509	0.00878239	FOXP3.p2	BC059853|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene	BC042666|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr3_-_89824973_89824990	0.00854967	FOXP3.p2	AK208727|Ubap2l|74383|ubiquitin associated protein 2-like	AK218166|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr11_-_69208847_69208875	0.00807045	FOXP3.p2	BC099556|Cyb5d1|327951|cytochrome b5 domain containing 1	NM_001045525|Cyb5d1|327951|cytochrome b5 domain containing 1
mm9_v1_chr2_+_24935818_24936028	0.00761646	FOXP3.p2	BC031143|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	NM_028093|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AY364442|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AK008590|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8
mm9_v1_chr2_-_155479292_155479385	0.00721959	FOXP3.p2	BC003931|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chrX_-_75336699_75336712	0.00721768	FOXP3.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr1_-_95698465_95698512	0.00692821	FOXP3.p2	AK088416|Dtymk|21915|deoxythymidylate kinase	AK019445|Dtymk|21915|deoxythymidylate kinase	AK160747|Dtymk|21915|deoxythymidylate kinase	BC069902|Dtymk|21915|deoxythymidylate kinase	AK009220|Dtymk|21915|deoxythymidylate kinase	AK019288|Dtymk|21915|deoxythymidylate kinase	NM_001105667|Dtymk|21915|deoxythymidylate kinase	NM_023136|Dtymk|21915|deoxythymidylate kinase
mm9_v1_chr11_-_4987973_4988127	0.00690431	FOXP3.p2	AK178351|Ewsr1|14030|Ewing sarcoma breakpoint region 1
mm9_v1_chr11_+_51926650_51926652	0.00685993	FOXP3.p2	AK199825|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm9_v1_chr19_-_7877136_7877156	0.00673375	FOXP3.p2	BC014805|BC014805|236149|cDNA sequence BC014805	NM_146232|BC014805|236149|cDNA sequence BC014805
mm9_v1_chr19_-_36763823_36763968	0.00668805	FOXP3.p2	AK142254|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chr4_+_125701902_125702025	0.00659202	FOXP3.p2	AK144318|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	NM_007782|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	AK089305|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	M58288|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	BC115865|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)	BC116635|Csf3r|12986|colony stimulating factor 3 receptor (granulocyte)
mm9_v1_chr1_+_87804349_87804399	0.00651269	FOXP3.p2	AK206485|Itm2c|64294|integral membrane protein 2C	AK207473|Itm2c|64294|integral membrane protein 2C	AK218160|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr4_+_57906588_57906598	0.00649387	FOXP3.p2	AK081365|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr3_+_67406958_67407063	0.00630138	FOXP3.p2	AK171855|Mfsd1|66868|major facilitator superfamily domain containing 1
mm9_v1_chr2_+_59192308_59192366	0.00563319	FOXP3.p2	AK021168|Pkp4|227937|plakophilin 4
mm9_v1_chr2_+_88798624_88798624	0.00554642	FOXP3.p2	NM_207140|Olfr1212|258241|olfactory receptor 1212
mm9_v1_chr11_-_19977305_19977316	0.00507168	FOXP3.p2	BC023864|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr16_+_45224449_45224465	0.00505959	FOXP3.p2	AK041334|Btla|208154|B and T lymphocyte associated	BC108963|Btla|208154|B and T lymphocyte associated	BC108964|Btla|208154|B and T lymphocyte associated	NM_001037719|Btla|208154|B and T lymphocyte associated	NM_177584|Btla|208154|B and T lymphocyte associated	AY293285|Btla|208154|B and T lymphocyte associated
mm9_v1_chr11_+_85322997_85323115	0.00481229	FOXP3.p2	AK192083|Bcas3|192197|breast carcinoma amplified sequence 3
mm9_v1_chr5_-_44152043_44152071	0.00399955	FOXP3.p2	AK210775|Fbxl5|242960|F-box and leucine-rich repeat protein 5
mm9_v1_chr16_-_31314534_31314685	0.00383545	FOXP3.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chr11_+_119338502_119338601	0.00371489	FOXP3.p2	BC038025|Rnf213|672511|ring finger protein 213
mm9_v1_chr12_+_75028976_75029036	0.0036175	FOXP3.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr5_-_20930494_20930494	0.0036022	FOXP3.p2	AK015926|Ccdc146|75172|coiled-coil domain containing 146	NM_029195|Ccdc146|75172|coiled-coil domain containing 146
mm9_v1_chr2_-_87475901_87475901	0.00322247	FOXP3.p2	NM_146836|Olfr1132|258833|olfactory receptor 1132
mm9_v1_chr10_-_12581443_12581532	0.00315175	FOXP3.p2	Y12229|Utrn|22288|utrophin	NM_011682|Utrn|22288|utrophin
mm9_v1_chr6_-_40535762_40535819	0.00295831	FOXP3.p2	BC104364|Clec5a|23845|C-type lectin domain family 5, member a	BC104365|Clec5a|23845|C-type lectin domain family 5, member a	AK036697|Clec5a|23845|C-type lectin domain family 5, member a	AF139769|Clec5a|23845|C-type lectin domain family 5, member a	AK046600|Clec5a|23845|C-type lectin domain family 5, member a	AK137482|Clec5a|23845|C-type lectin domain family 5, member a	NM_001038604|Clec5a|23845|C-type lectin domain family 5, member a	NM_021364|Clec5a|23845|C-type lectin domain family 5, member a	AK155409|Clec5a|23845|C-type lectin domain family 5, member a
mm9_v1_chr15_+_92174789_92174819	0.00227915	FOXP3.p2	
mm9_v1_chr2_-_88842442_88842446	0.00154804	FOXP3.p2	BC127970|Olfr1215|258451|olfactory receptor 1215	NM_146459|Olfr1215|258451|olfactory receptor 1215
mm9_v1_chr10_-_77734341_77734501	0.00140149	FOXP3.p2	
mm9_v1_chr15_+_75771484_75771517	0.00114939	FOXP3.p2	AK019163|Zfp623|78834|zinc finger protein 623	BC086767|Zfp623|78834|zinc finger protein 623
mm9_v1_chr13_-_27530465_27530556	0.00104928	FOXP3.p2	AF090140|Prl8a6|19112|prolactin family 8, subfamily a, member 6	NM_011167|Prl8a6|19112|prolactin family 8, subfamily a, member 6	BC099469|Prl8a6|19112|prolactin family 8, subfamily a, member 6	AK005435|Prl8a6|19112|prolactin family 8, subfamily a, member 6	AK005478|Prl8a6|19112|prolactin family 8, subfamily a, member 6
mm9_v1_chr7_+_111054855_111054855	0.000969853	FOXP3.p2	BC137766|Olfr65|18365|olfactory receptor 65	NM_013616|Olfr65|18365|olfactory receptor 65
mm9_v1_chr3_-_153574996_153575274	0.000790827	FOXP3.p2	AK160162|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC003948|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC021335|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	AF231926|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	U12922|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC132473|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC138547|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145323|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145324|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145325|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC145326|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	NM_011231|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit	BC057661|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit
mm9_v1_chrX_+_98877684_98877720	0.000745989	FOXP3.p2	AK041765|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm9_v1_chr3_+_84668066_84668066	0.000693888	FOXP3.p2	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr3_+_51299153_51299205	0.000657276	FOXP3.p2	
mm9_v1_chr6_+_18816317_18816373	0.000643921	FOXP3.p2	BC049731|Ankrd7|75196|ankyrin repeat domain 7	NM_001167757|Ankrd7|75196|ankyrin repeat domain 7	NM_029202|Ankrd7|75196|ankyrin repeat domain 7	AK077080|Ankrd7|75196|ankyrin repeat domain 7	AK015948|Ankrd7|75196|ankyrin repeat domain 7
mm9_v1_chr12_+_109926485_109926622	0.000522252	FOXP3.p2	
mm9_v1_chr6_-_54543121_54543160	0.000432657	FOXP3.p2	BC029109|Fkbp14|231997|FK506 binding protein 14	NM_153573|Fkbp14|231997|FK506 binding protein 14	BC034313|Fkbp14|231997|FK506 binding protein 14	AK081692|Fkbp14|231997|FK506 binding protein 14	AK044876|Fkbp14|231997|FK506 binding protein 14
