mm9_v1_chr7_-_111001598_111001720	20.5905	NKX6-1,2.p2	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr5_+_90889913_90889929	11.1539	NKX6-1,2.p2	NM_009654|Alb|11657|albumin	AK131891|Alb|11657|albumin	AK160487|Alb|11657|albumin	AK010025|Alb|11657|albumin	AK050248|Alb|11657|albumin	AJ011413|Alb|11657|albumin
mm9_v1_chrX_+_108009728_108009803	9.53803	NKX6-1,2.p2	BC138657|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC145919|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC052012|Pou3f4|18994|POU domain, class 3, transcription factor 4	X66603|Pou3f4|18994|POU domain, class 3, transcription factor 4	AK158302|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC086670|Pou3f4|18994|POU domain, class 3, transcription factor 4	NM_008901|Pou3f4|18994|POU domain, class 3, transcription factor 4
mm9_v1_chr6_-_127075853_127076093	7.56928	NKX6-1,2.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr9_+_96159123_96159160	5.812	NKX6-1,2.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr19_-_14672472_14672537	4.96756	NKX6-1,2.p2	AK017548|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	NM_011600|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr9_+_96159666_96159703	4.65001	NKX6-1,2.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr19_-_14672540_14672588	4.63079	NKX6-1,2.p2	AK134989|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	BC086631|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr1_-_42749940_42749978	4.29208	NKX6-1,2.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr5_+_90889937_90889973	4.17456	NKX6-1,2.p2	BC024643|Alb|11657|albumin	BC049971|Alb|11657|albumin	AJ457860|Alb|11657|albumin
mm9_v1_chr14_+_73637697_73637874	3.56888	NKX6-1,2.p2	NM_175116|Lpar6|67168|lysophosphatidic acid receptor 6	AK032901|Lpar6|67168|lysophosphatidic acid receptor 6	AK011967|Lpar6|67168|lysophosphatidic acid receptor 6	AK169602|Lpar6|67168|lysophosphatidic acid receptor 6	BC047931|Lpar6|67168|lysophosphatidic acid receptor 6	AK008952|Lpar6|67168|lysophosphatidic acid receptor 6	BC057175|Lpar6|67168|lysophosphatidic acid receptor 6	BC069991|Lpar6|67168|lysophosphatidic acid receptor 6
mm9_v1_chr1_-_180259336_180259529	2.83828	NKX6-1,2.p2	AK049375|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK080656|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr11_+_75565381_75565439	2.55048	NKX6-1,2.p2	AX775993|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK192964|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK202856|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr1_+_66368409_66368422	2.50422	NKX6-1,2.p2	AK079618|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr14_+_67254087_67254180	2.50135	NKX6-1,2.p2	AK085653|Adra1a|11549|adrenergic receptor, alpha 1a	AK079597|Adra1a|11549|adrenergic receptor, alpha 1a	NM_013461|Adra1a|11549|adrenergic receptor, alpha 1a	AK050183|Adra1a|11549|adrenergic receptor, alpha 1a	AK042759|Adra1a|11549|adrenergic receptor, alpha 1a	AK138919|Adra1a|11549|adrenergic receptor, alpha 1a
mm9_v1_chr15_-_13103346_13103429	2.39741	NKX6-1,2.p2	NM_007666|Cdh6|12563|cadherin 6	AK134611|Cdh6|12563|cadherin 6
mm9_v1_chr7_-_69609363_69609425	2.39295	NKX6-1,2.p2	BC138242|Peg12|27412|paternally expressed 12	BC138243|Peg12|27412|paternally expressed 12	AF148857|Peg12|27412|paternally expressed 12	NM_013788|Peg12|27412|paternally expressed 12
mm9_v1_chr4_-_116855158_116855228	2.32091	NKX6-1,2.p2	AK150222|Kif2c|73804|kinesin family member 2C	AK088047|Kif2c|73804|kinesin family member 2C	BC006841|Kif2c|73804|kinesin family member 2C	AK015046|Kif2c|73804|kinesin family member 2C	NM_134471|Kif2c|73804|kinesin family member 2C
mm9_v1_chr3_+_96405063_96405082	2.30479	NKX6-1,2.p2	AK051276|Lix1l|280411|Lix1-like
mm9_v1_chr2_+_79547936_79548278	2.27684	NKX6-1,2.p2	AK051670|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	NM_172420|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC120706|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC132149|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK051449|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK157871|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK083940|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm9_v1_chr3_-_49561168_49561243	2.18367	NKX6-1,2.p2	AF416735|Pcdh18|73173|protocadherin 18	AK173204|Pcdh18|73173|protocadherin 18	BC052198|Pcdh18|73173|protocadherin 18	AK036560|Pcdh18|73173|protocadherin 18	AK032820|Pcdh18|73173|protocadherin 18	NM_130448|Pcdh18|73173|protocadherin 18
mm9_v1_chr3_+_40439675_40439741	2.17931	NKX6-1,2.p2	NM_175515|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	AK035092|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC125523|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC132387|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)
mm9_v1_chr3_+_66023808_66023844	2.12921	NKX6-1,2.p2	NM_008987|Ptx3|19288|pentraxin related gene	BC022176|Ptx3|19288|pentraxin related gene
mm9_v1_chr5_+_123592177_123592311	2.12699	NKX6-1,2.p2	AK141316|Setd1b|208043|SET domain containing 1B
mm9_v1_chr11_-_101828286_101828333	2.12254	NKX6-1,2.p2	AF326740|Sost|74499|sclerostin	BC137832|Sost|74499|sclerostin	BC137833|Sost|74499|sclerostin	AK017295|Sost|74499|sclerostin	AK041382|Sost|74499|sclerostin	NM_024449|Sost|74499|sclerostin
mm9_v1_chr6_+_137703029_137703138	2.11236	NKX6-1,2.p2	AK145820|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK168204|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK012558|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK008033|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK030961|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK075963|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK150273|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK169418|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK152462|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK034347|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	BC016218|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK083298|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	NM_172733|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK150712|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)
mm9_v1_chr1_-_176851918_176851937	2.11042	NKX6-1,2.p2	AK161827|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	BC079905|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr1_-_173957407_173957430	2.10584	NKX6-1,2.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr15_-_103045710_103045798	2.05731	NKX6-1,2.p2	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr11_-_86517662_86517713	2.05381	NKX6-1,2.p2	AK167527|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr5_+_93238413_93238466	1.97844	NKX6-1,2.p2	NM_001077595|Shroom3|27428|shroom family member 3	AK164918|Shroom3|27428|shroom family member 3	AF199422|Shroom3|27428|shroom family member 3
mm9_v1_chr12_-_81861527_81861701	1.86424	NKX6-1,2.p2	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr1_-_176851949_176851953	1.84155	NKX6-1,2.p2	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr19_-_58529766_58529841	1.82114	NKX6-1,2.p2	BC044783|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AK076171|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr3_+_66023884_66023904	1.74589	NKX6-1,2.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr5_-_23536487_23536520	1.73393	NKX6-1,2.p2	BC060692|Fam126a|84652|family with sequence similarity 126, member A	AK155209|Fam126a|84652|family with sequence similarity 126, member A	NM_053090|Fam126a|84652|family with sequence similarity 126, member A
mm9_v1_chr5_-_52576002_52576142	1.73306	NKX6-1,2.p2	
mm9_v1_chr4_+_140257340_140257464	1.66382	NKX6-1,2.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr7_-_106987766_106987861	1.63713	NKX6-1,2.p2	AK180141|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr2_-_84490827_84490896	1.62275	NKX6-1,2.p2	BC054544|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC043108|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK161790|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK164485|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK168453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085448|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085449|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085450|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_007615|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr3_+_135101248_135101271	1.61208	NKX6-1,2.p2	AK167138|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK003163|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK009276|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK009936|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chrX_+_34142137_34142199	1.56015	NKX6-1,2.p2	
mm9_v1_chrX_-_48371127_48371236	1.5423	NKX6-1,2.p2	AK087971|Rap2c|72065|RAP2C, member of RAS oncogene family	BC050056|Rap2c|72065|RAP2C, member of RAS oncogene family	BC027363|Rap2c|72065|RAP2C, member of RAS oncogene family	AK146057|Rap2c|72065|RAP2C, member of RAS oncogene family	BC064814|Rap2c|72065|RAP2C, member of RAS oncogene family	BC094890|Rap2c|72065|RAP2C, member of RAS oncogene family	NM_172413|Rap2c|72065|RAP2C, member of RAS oncogene family	AK146956|Rap2c|72065|RAP2C, member of RAS oncogene family	AK147015|Rap2c|72065|RAP2C, member of RAS oncogene family
mm9_v1_chr2_+_90858663_90858815	1.47595	NKX6-1,2.p2	AK080832|Celf1|13046|CUGBP, Elav-like family member 1	AK160135|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr11_-_17853850_17853896	1.42728	NKX6-1,2.p2	BC028916|Etaa1|68145|Ewing's tumor-associated antigen 1	AK034138|Etaa1|68145|Ewing's tumor-associated antigen 1	AK019965|Etaa1|68145|Ewing's tumor-associated antigen 1	NM_026576|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr8_+_116657473_116657573	1.39976	NKX6-1,2.p2	AK088191|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024437|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024446|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AF338424|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK004924|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC069843|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK011172|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC033046|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK008824|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm9_v1_chr4_-_154010868_154010981	1.376	NKX6-1,2.p2	AB078338|Prdm16|70673|PR domain containing 16	AK083829|Prdm16|70673|PR domain containing 16	BC053082|Prdm16|70673|PR domain containing 16	BC059838|Prdm16|70673|PR domain containing 16	NM_001177995|Prdm16|70673|PR domain containing 16	NM_027504|Prdm16|70673|PR domain containing 16
mm9_v1_chr12_-_74147698_74147707	1.33835	NKX6-1,2.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr7_-_25873560_25873562	1.32416	NKX6-1,2.p2	
mm9_v1_chr2_+_13501725_13501846	1.29685	NKX6-1,2.p2	AK205443|Vim|22352|vimentin
mm9_v1_chr12_+_82049290_82049329	1.24611	NKX6-1,2.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr3_+_145541951_145541971	1.20355	NKX6-1,2.p2	
mm9_v1_chr15_-_96861590_96861647	1.19689	NKX6-1,2.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr7_+_16633755_16633793	1.17752	NKX6-1,2.p2	AK008102|2010004M13Rik|76511|RIKEN cDNA 2010004M13 gene
mm9_v1_chr1_-_93295259_93295297	1.17082	NKX6-1,2.p2	BC027439|Ilkap|67444|integrin-linked kinase-associated serine/threonine phosphatase 2C
mm9_v1_chr3_+_123149830_123150053	1.15444	NKX6-1,2.p2	D89871|Prss12|19142|protease, serine, 12 neurotrypsin (motopsin)	NM_008939|Prss12|19142|protease, serine, 12 neurotrypsin (motopsin)	BC031429|Prss12|19142|protease, serine, 12 neurotrypsin (motopsin)	AK132633|Prss12|19142|protease, serine, 12 neurotrypsin (motopsin)	Y13192|Prss12|19142|protease, serine, 12 neurotrypsin (motopsin)
mm9_v1_chr4_-_3865501_3865606	1.13425	NKX6-1,2.p2	BC139283|Plag1|56711|pleiomorphic adenoma gene 1	BC139285|Plag1|56711|pleiomorphic adenoma gene 1	AY574219|Plag1|56711|pleiomorphic adenoma gene 1	AK044405|Plag1|56711|pleiomorphic adenoma gene 1	NM_019969|Plag1|56711|pleiomorphic adenoma gene 1
mm9_v1_chr2_+_174171943_174171964	1.13351	NKX6-1,2.p2	
mm9_v1_chr1_-_179178874_179178897	1.13166	NKX6-1,2.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr18_-_89063689_89063737	1.13009	NKX6-1,2.p2	AK142069|Socs6|54607|suppressor of cytokine signaling 6	AK053803|Socs6|54607|suppressor of cytokine signaling 6	AK156591|Socs6|54607|suppressor of cytokine signaling 6
mm9_v1_chr2_+_69699618_69699738	1.12811	NKX6-1,2.p2	NM_001110145|Ssb|20823|Sjogren syndrome antigen B	NM_009278|Ssb|20823|Sjogren syndrome antigen B	AK088650|Ssb|20823|Sjogren syndrome antigen B	AK134864|Ssb|20823|Sjogren syndrome antigen B	AK168828|Ssb|20823|Sjogren syndrome antigen B	AK032940|Ssb|20823|Sjogren syndrome antigen B	AK017822|Ssb|20823|Sjogren syndrome antigen B	AK088370|Ssb|20823|Sjogren syndrome antigen B	AK088677|Ssb|20823|Sjogren syndrome antigen B	L00993|Ssb|20823|Sjogren syndrome antigen B	Y07951|Ssb|20823|Sjogren syndrome antigen B	AK141487|Ssb|20823|Sjogren syndrome antigen B	BC003820|Ssb|20823|Sjogren syndrome antigen B	BC106150|Ssb|20823|Sjogren syndrome antigen B
mm9_v1_chr15_+_80629020_80629144	1.11554	NKX6-1,2.p2	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr12_+_119082333_119082371	1.10609	NKX6-1,2.p2	BC006933|Cdca7l|217946|cell division cycle associated 7 like	NM_146040|Cdca7l|217946|cell division cycle associated 7 like	AK149673|Cdca7l|217946|cell division cycle associated 7 like	BC071198|Cdca7l|217946|cell division cycle associated 7 like
mm9_v1_chr8_-_88077181_88077304	1.1021	NKX6-1,2.p2	AK212721|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr1_-_140743779_140743951	1.09892	NKX6-1,2.p2	AB221560|Lhx9|16876|LIM homeobox protein 9	AK013209|Lhx9|16876|LIM homeobox protein 9
mm9_v1_chr5_+_53225253_53225293	1.09535	NKX6-1,2.p2	AK166061|Anapc4|52206|anaphase promoting complex subunit 4
mm9_v1_chr2_-_125450836_125450859	1.07169	NKX6-1,2.p2	AK041913|Cep152|99100|centrosomal protein 152	AK173060|Cep152|99100|centrosomal protein 152	NM_001081091|Cep152|99100|centrosomal protein 152
mm9_v1_chr9_-_71743854_71743929	1.04375	NKX6-1,2.p2	AK135376|Tcf12|21406|transcription factor 12	AK132002|Tcf12|21406|transcription factor 12	AK133958|Tcf12|21406|transcription factor 12	AK078415|Tcf12|21406|transcription factor 12
mm9_v1_chr3_+_82859422_82859482	1.03707	NKX6-1,2.p2	AK080068|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK077197|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	NM_016784|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK075993|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK076007|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr10_+_87663839_87663973	1.02026	NKX6-1,2.p2	AK013835|Ccdc53|67282|coiled-coil domain containing 53	AK158822|Ccdc53|67282|coiled-coil domain containing 53	NM_001122960|Ccdc53|67282|coiled-coil domain containing 53	NM_026070|Ccdc53|67282|coiled-coil domain containing 53	NM_027487|Ccdc53|67282|coiled-coil domain containing 53	AK017732|Ccdc53|67282|coiled-coil domain containing 53	AK004206|Ccdc53|67282|coiled-coil domain containing 53	AK028599|Ccdc53|67282|coiled-coil domain containing 53	AK009358|Ccdc53|67282|coiled-coil domain containing 53	BC029256|Ccdc53|67282|coiled-coil domain containing 53
mm9_v1_chr2_-_91771882_91771894	1.01695	NKX6-1,2.p2	M34327|Mdk|17242|midkine	M35833|Mdk|17242|midkine
mm9_v1_chr10_+_68996455_68996596	1.01505	NKX6-1,2.p2	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr19_-_44181897_44181978	0.998975	NKX6-1,2.p2	AK035326|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	U12473|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK150039|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK165275|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK018671|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155328|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	BC018243|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155393|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK164236|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_001162410|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_007700|Chuk|12675|conserved helix-loop-helix ubiquitous kinase
mm9_v1_chr9_+_78039786_78039851	0.991278	NKX6-1,2.p2	AK008400|Gsta4|14860|glutathione S-transferase, alpha 4	AK008189|Gsta4|14860|glutathione S-transferase, alpha 4	AK011841|Gsta4|14860|glutathione S-transferase, alpha 4	AK019271|Gsta4|14860|glutathione S-transferase, alpha 4	AK009668|Gsta4|14860|glutathione S-transferase, alpha 4	AK010098|Gsta4|14860|glutathione S-transferase, alpha 4	AK008193|Gsta4|14860|glutathione S-transferase, alpha 4	AK008490|Gsta4|14860|glutathione S-transferase, alpha 4	AK011177|Gsta4|14860|glutathione S-transferase, alpha 4	BC012639|Gsta4|14860|glutathione S-transferase, alpha 4	L06047|Gsta4|14860|glutathione S-transferase, alpha 4
mm9_v1_chr10_-_126748678_126748747	0.987376	NKX6-1,2.p2	BC052042|Mars|216443|methionine-tRNA synthetase	BC079643|Mars|216443|methionine-tRNA synthetase	BC058968|Mars|216443|methionine-tRNA synthetase
mm9_v1_chr9_+_72584532_72584702	0.976329	NKX6-1,2.p2	BC007184|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr6_-_51413182_51413233	0.962366	NKX6-1,2.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr6_-_82724366_82724447	0.955721	NKX6-1,2.p2	BC054472|Hk2|15277|hexokinase 2	AJ238540|Hk2|15277|hexokinase 2	AK019092|Hk2|15277|hexokinase 2	AK145936|Hk2|15277|hexokinase 2	AK009328|Hk2|15277|hexokinase 2	NM_013820|Hk2|15277|hexokinase 2
mm9_v1_chr16_-_52268571_52268603	0.950771	NKX6-1,2.p2	AK161090|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr11_-_116711807_116712035	0.947523	NKX6-1,2.p2	AK211203|Srsf2|20382|serine/arginine-rich splicing factor 2	AK207032|Srsf2|20382|serine/arginine-rich splicing factor 2	AK212169|Srsf2|20382|serine/arginine-rich splicing factor 2	AK220014|Srsf2|20382|serine/arginine-rich splicing factor 2	AF250134|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr11_+_93905557_93905590	0.939365	NKX6-1,2.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr11_-_119971500_119971623	0.922085	NKX6-1,2.p2	AK195379|Slc38a10|72055|solute carrier family 38, member 10	AK176940|Slc38a10|72055|solute carrier family 38, member 10	AK182790|Slc38a10|72055|solute carrier family 38, member 10	BC055017|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr16_-_30267577_30267656	0.91708	NKX6-1,2.p2	BC025836|Cpn2|71756|carboxypeptidase N, polypeptide 2	AK005049|Cpn2|71756|carboxypeptidase N, polypeptide 2	NM_027904|Cpn2|71756|carboxypeptidase N, polypeptide 2
mm9_v1_chr16_-_16560240_16560303	0.898713	NKX6-1,2.p2	BC145523|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402611|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139232|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AF402613|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139234|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK034504|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	AK134961|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr11_+_62692976_62693095	0.890137	NKX6-1,2.p2	AK077277|Fam18b|67510|family with sequence similarity 18, member B	NM_026210|Fam18b|67510|family with sequence similarity 18, member B	AK150936|Fam18b|67510|family with sequence similarity 18, member B	BC115504|Fam18b|67510|family with sequence similarity 18, member B	BC115505|Fam18b|67510|family with sequence similarity 18, member B	AK007707|Fam18b|67510|family with sequence similarity 18, member B	AK017572|Fam18b|67510|family with sequence similarity 18, member B
mm9_v1_chr17_-_48572043_48572062	0.889168	NKX6-1,2.p2	AF161699|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	NM_009694|Apobec2|11811|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm9_v1_chr18_+_32996878_32997001	0.887741	NKX6-1,2.p2	AK156822|Wdr36|225348|WD repeat domain 36	NM_001110015|Wdr36|225348|WD repeat domain 36	NM_001110016|Wdr36|225348|WD repeat domain 36	NM_144863|Wdr36|225348|WD repeat domain 36	AK045396|Wdr36|225348|WD repeat domain 36	BC022132|Wdr36|225348|WD repeat domain 36	BC094453|Wdr36|225348|WD repeat domain 36	AK171683|Wdr36|225348|WD repeat domain 36	AK077545|Wdr36|225348|WD repeat domain 36	AK172377|Wdr36|225348|WD repeat domain 36	AK140019|Wdr36|225348|WD repeat domain 36	AK172054|Wdr36|225348|WD repeat domain 36	AK041763|Wdr36|225348|WD repeat domain 36	BC025809|Wdr36|225348|WD repeat domain 36	AK155965|Wdr36|225348|WD repeat domain 36
mm9_v1_chr2_-_37502738_37502804	0.884289	NKX6-1,2.p2	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr13_+_23830944_23831229	0.85628	NKX6-1,2.p2	AK135614|Hist1h1c|50708|histone cluster 1, H1c	AK209931|Hist1h1c|50708|histone cluster 1, H1c	AK211271|Hist1h1c|50708|histone cluster 1, H1c	AK210230|Hist1h1c|50708|histone cluster 1, H1c
mm9_v1_chr2_-_65405546_65405588	0.855525	NKX6-1,2.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr7_+_74792295_74792398	0.85376	NKX6-1,2.p2	AK086049|Ttc23|67009|tetratricopeptide repeat domain 23	AK165626|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168475|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168476|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168477|Ttc23|67009|tetratricopeptide repeat domain 23	NM_025905|Ttc23|67009|tetratricopeptide repeat domain 23	AK141754|Ttc23|67009|tetratricopeptide repeat domain 23	BC038179|Ttc23|67009|tetratricopeptide repeat domain 23	AK005431|Ttc23|67009|tetratricopeptide repeat domain 23	AK084269|Ttc23|67009|tetratricopeptide repeat domain 23	AK166555|Ttc23|67009|tetratricopeptide repeat domain 23	AK166613|Ttc23|67009|tetratricopeptide repeat domain 23
mm9_v1_chr11_+_115794942_115794982	0.846485	NKX6-1,2.p2	AK147869|Sap30bp|57230|SAP30 binding protein	AK012245|Sap30bp|57230|SAP30 binding protein	BC021757|Sap30bp|57230|SAP30 binding protein	NM_020483|Sap30bp|57230|SAP30 binding protein	X68061|Sap30bp|57230|SAP30 binding protein
mm9_v1_chr4_-_21694265_21694282	0.843537	NKX6-1,2.p2	AK011611|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr14_-_104921839_104921882	0.834509	NKX6-1,2.p2	BC029231|Rnf219|72486|ring finger protein 219	AK020974|Rnf219|72486|ring finger protein 219	AK013314|Rnf219|72486|ring finger protein 219	NM_026047|Rnf219|72486|ring finger protein 219
mm9_v1_chr19_+_8876985_8877044	0.834143	NKX6-1,2.p2	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr10_-_79373177_79373432	0.833046	NKX6-1,2.p2	AK206142|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK206739|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK212119|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK180841|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK179327|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK207391|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218659|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218931|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr18_-_74367400_74367471	0.810864	NKX6-1,2.p2	AK007138|Ska1|66468|spindle and kinetochore associated complex subunit 1	DQ926863|Ska1|66468|spindle and kinetochore associated complex subunit 1	DQ926864|Ska1|66468|spindle and kinetochore associated complex subunit 1	AK006442|Ska1|66468|spindle and kinetochore associated complex subunit 1	AK013233|Ska1|66468|spindle and kinetochore associated complex subunit 1	AK021226|Ska1|66468|spindle and kinetochore associated complex subunit 1	NM_001164355|Ska1|66468|spindle and kinetochore associated complex subunit 1	NM_025581|Ska1|66468|spindle and kinetochore associated complex subunit 1
mm9_v1_chr1_-_84741605_84741713	0.809205	NKX6-1,2.p2	BC004085|Trip12|14897|thyroid hormone receptor interactor 12
mm9_v1_chr14_+_65885454_65885579	0.807543	NKX6-1,2.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr4_-_34754469_34754554	0.799225	NKX6-1,2.p2	AB221605|Zfp292|30046|zinc finger protein 292
mm9_v1_chr5_-_84846348_84846408	0.798063	NKX6-1,2.p2	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr5_-_136384495_136384514	0.785907	NKX6-1,2.p2	
mm9_v1_chr10_+_24315247_24315401	0.776928	NKX6-1,2.p2	NM_010217|Ctgf|14219|connective tissue growth factor	BC006783|Ctgf|14219|connective tissue growth factor	M80263|Ctgf|14219|connective tissue growth factor	M70642|Ctgf|14219|connective tissue growth factor
mm9_v1_chr6_+_51494591_51494699	0.770393	NKX6-1,2.p2	AK152004|Snx10|71982|sorting nexin 10
mm9_v1_chr15_-_81222718_81222746	0.767944	NKX6-1,2.p2	AK205921|St13|70356|suppression of tumorigenicity 13
mm9_v1_chr11_+_93905443_93905464	0.766928	NKX6-1,2.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chrM_+_1550_2087	0.751277	NKX6-1,2.p2	
mm9_v1_chr8_+_131256428_131256477	0.749207	NKX6-1,2.p2	AK008343|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chrY_-_582062_582201	0.748421	NKX6-1,2.p2	AK162410|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK220463|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK155922|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AF057367|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	BC053061|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK043154|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	NM_009484|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142344|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142512|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm9_v1_chr2_-_131005549_131005768	0.743428	NKX6-1,2.p2	BC075733|Cenpb|12616|centromere protein B	BC006628|Cenpb|12616|centromere protein B	BC053333|Cenpb|12616|centromere protein B	NM_007682|Cenpb|12616|centromere protein B
mm9_v1_chr2_-_79969095_79969127	0.737671	NKX6-1,2.p2	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr11_-_53097625_53097670	0.73604	NKX6-1,2.p2	AK179174|Hspa4|15525|heat shock protein 4
mm9_v1_chr1_+_174249713_174249834	0.735474	NKX6-1,2.p2	
mm9_v1_chr18_+_25224729_25224737	0.735242	NKX6-1,2.p2	BC060607|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr1_+_174628164_174628196	0.733121	NKX6-1,2.p2	AK050392|Crp|12944|C-reactive protein, pentraxin-related	NM_007768|Crp|12944|C-reactive protein, pentraxin-related	X17496|Crp|12944|C-reactive protein, pentraxin-related	AK088477|Crp|12944|C-reactive protein, pentraxin-related	BC011124|Crp|12944|C-reactive protein, pentraxin-related
mm9_v1_chr7_+_58877199_58877199	0.725952	NKX6-1,2.p2	NM_080853|Slc17a6|140919|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm9_v1_chr1_+_63223689_63223722	0.722402	NKX6-1,2.p2	BC039635|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2	AK027911|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2	AK168191|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2	BC023139|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2	AK012756|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2	BC003899|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2
mm9_v1_chr1_-_12980994_12981257	0.722269	NKX6-1,2.p2	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr1_-_128727208_128727208	0.721442	NKX6-1,2.p2	NM_001081756|Nckap5|210356|NCK-associated protein 5	NM_176957|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr5_+_90890764_90890776	0.72012	NKX6-1,2.p2	AK050644|Alb|11657|albumin
mm9_v1_chr9_-_55983967_55984081	0.709835	NKX6-1,2.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr4_+_32504409_32504501	0.709224	NKX6-1,2.p2	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr3_+_89586320_89586446	0.708877	NKX6-1,2.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr1_+_19202046_19202134	0.708068	NKX6-1,2.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr11_+_102254949_102254989	0.70083	NKX6-1,2.p2	U73941|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr12_-_85262786_85262867	0.695006	NKX6-1,2.p2	AK004553|Numb|18222|numb gene homolog (Drosophila)	BC050108|Numb|18222|numb gene homolog (Drosophila)	BC033459|Numb|18222|numb gene homolog (Drosophila)
mm9_v1_chrM_-_13886_13905	0.693121	NKX6-1,2.p2	
mm9_v1_chr12_-_56087322_56087322	0.687893	NKX6-1,2.p2	AK135668|Baz1a|217578|bromodomain adjacent to zinc finger domain 1A	NM_013815|Baz1a|217578|bromodomain adjacent to zinc finger domain 1A
mm9_v1_chr6_+_51494521_51494550	0.687287	NKX6-1,2.p2	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr14_+_66424675_66424787	0.678693	NKX6-1,2.p2	AK076121|Pbk|52033|PDZ binding kinase	BC020099|Pbk|52033|PDZ binding kinase	AB041882|Pbk|52033|PDZ binding kinase	NM_023209|Pbk|52033|PDZ binding kinase	AK003838|Pbk|52033|PDZ binding kinase
mm9_v1_chr15_-_76476688_76476767	0.675885	NKX6-1,2.p2	AK028994|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chr1_+_43502537_43502605	0.673277	NKX6-1,2.p2	AK051665|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	NM_010879|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	AK014949|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chrX_-_147248815_147248863	0.665658	NKX6-1,2.p2	AJ277114|Maged2|80884|melanoma antigen, family D, 2	NM_030700|Maged2|80884|melanoma antigen, family D, 2	AK169006|Maged2|80884|melanoma antigen, family D, 2
mm9_v1_chr3_+_90097269_90097314	0.654895	NKX6-1,2.p2	AK041594|Gatad2b|229542|GATA zinc finger domain containing 2B
mm9_v1_chr10_-_84590718_84590771	0.653443	NKX6-1,2.p2	BC046619|Mterfd3|74238|MTERF domain containing 3	AK047778|Mterfd3|74238|MTERF domain containing 3	AK039816|Mterfd3|74238|MTERF domain containing 3	NM_028832|Mterfd3|74238|MTERF domain containing 3
mm9_v1_chr5_+_149114763_149114791	0.65335	NKX6-1,2.p2	AK019985|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr2_-_114001033_114001080	0.649869	NKX6-1,2.p2	AK151716|Aqr|11834|aquarius	BC042479|Aqr|11834|aquarius	AK145547|Aqr|11834|aquarius	AK077886|Aqr|11834|aquarius	AK122310|Aqr|11834|aquarius	AK016322|Aqr|11834|aquarius	AK020468|Aqr|11834|aquarius	NM_009702|Aqr|11834|aquarius
mm9_v1_chr16_-_84955086_84955166	0.645446	NKX6-1,2.p2	AK190928|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr17_+_40948047_40948124	0.644758	NKX6-1,2.p2	AK157847|Rhag|19743|Rhesus blood group-associated A glycoprotein	AF057526|Rhag|19743|Rhesus blood group-associated A glycoprotein	AK143851|Rhag|19743|Rhesus blood group-associated A glycoprotein	NM_011269|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC101941|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC101942|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC103512|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC103662|Rhag|19743|Rhesus blood group-associated A glycoprotein	AB015192|Rhag|19743|Rhesus blood group-associated A glycoprotein	AF065395|Rhag|19743|Rhesus blood group-associated A glycoprotein
mm9_v1_chr7_+_25055436_25055599	0.640585	NKX6-1,2.p2	AK132229|Zfp93|22755|zinc finger protein 93	NM_009567|Zfp93|22755|zinc finger protein 93	U46186|Zfp93|22755|zinc finger protein 93	AK146095|Zfp93|22755|zinc finger protein 93	AK165630|Zfp93|22755|zinc finger protein 93	AK040325|Zfp93|22755|zinc finger protein 93	AK028905|Zfp93|22755|zinc finger protein 93
mm9_v1_chr3_-_41546402_41546435	0.635171	NKX6-1,2.p2	BC043136|Sclt1|67161|sodium channel and clathrin linker 1	BC060271|Sclt1|67161|sodium channel and clathrin linker 1	AK083894|Sclt1|67161|sodium channel and clathrin linker 1	AK016469|Sclt1|67161|sodium channel and clathrin linker 1	NM_001081411|Sclt1|67161|sodium channel and clathrin linker 1
mm9_v1_chr13_-_64376186_64376295	0.62887	NKX6-1,2.p2	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr11_+_26287083_26287211	0.628264	NKX6-1,2.p2	AF513619|Fancl|67030|Fanconi anemia, complementation group L	NM_025923|Fancl|67030|Fanconi anemia, complementation group L	AK011520|Fancl|67030|Fanconi anemia, complementation group L	AK168538|Fancl|67030|Fanconi anemia, complementation group L	AK008605|Fancl|67030|Fanconi anemia, complementation group L	AK011903|Fancl|67030|Fanconi anemia, complementation group L	AK017431|Fancl|67030|Fanconi anemia, complementation group L	AK020981|Fancl|67030|Fanconi anemia, complementation group L	AK076017|Fancl|67030|Fanconi anemia, complementation group L	AK018018|Fancl|67030|Fanconi anemia, complementation group L	AK011752|Fancl|67030|Fanconi anemia, complementation group L	BC032876|Fancl|67030|Fanconi anemia, complementation group L
mm9_v1_chr13_-_99660903_99660996	0.626744	NKX6-1,2.p2	BC055372|Tnpo1|238799|transportin 1	AK167049|Tnpo1|238799|transportin 1	AK045132|Tnpo1|238799|transportin 1	NM_001048267|Tnpo1|238799|transportin 1
mm9_v1_chr12_-_47919695_47919761	0.62658	NKX6-1,2.p2	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr7_+_46773116_46773135	0.620125	NKX6-1,2.p2	BC080693|Zfp619|70227|zinc finger protein 619	NM_001004139|Zfp619|70227|zinc finger protein 619
mm9_v1_chr9_+_107790457_107790481	0.618935	NKX6-1,2.p2	NM_028369|Mon1a|72825|MON1 homolog A (yeast)	BC058717|Mon1a|72825|MON1 homolog A (yeast)
mm9_v1_chr5_-_123270999_123271190	0.616746	NKX6-1,2.p2	AK203216|Anapc5|59008|anaphase-promoting complex subunit 5	AK194108|Anapc5|59008|anaphase-promoting complex subunit 5	AK180837|Anapc5|59008|anaphase-promoting complex subunit 5	AK182300|Anapc5|59008|anaphase-promoting complex subunit 5	AK186196|Anapc5|59008|anaphase-promoting complex subunit 5	AK215079|Anapc5|59008|anaphase-promoting complex subunit 5	AK197886|Anapc5|59008|anaphase-promoting complex subunit 5	AK217317|Anapc5|59008|anaphase-promoting complex subunit 5	AK192754|Anapc5|59008|anaphase-promoting complex subunit 5
mm9_v1_chr11_+_75578120_75578179	0.607785	NKX6-1,2.p2	AK218111|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK180909|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr6_-_115626589_115626679	0.607436	NKX6-1,2.p2	AK141745|Raf1|110157|v-raf-leukemia viral oncogene 1	NM_029780|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr4_-_147183894_147183948	0.606176	NKX6-1,2.p2	NM_001127189|Gm13157|100041677|predicted gene 13157	AK011687|2610036A22Rik|70190|RIKEN cDNA 2610036A22 gene
mm9_v1_chr2_+_37307786_37307807	0.604636	NKX6-1,2.p2	AK029667|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr5_-_123271283_123271353	0.603738	NKX6-1,2.p2	AK147951|Anapc5|59008|anaphase-promoting complex subunit 5	BC046804|Anapc5|59008|anaphase-promoting complex subunit 5	AK075969|Anapc5|59008|anaphase-promoting complex subunit 5	AK159713|Anapc5|59008|anaphase-promoting complex subunit 5	AK159916|Anapc5|59008|anaphase-promoting complex subunit 5	AK167561|Anapc5|59008|anaphase-promoting complex subunit 5	AK168737|Anapc5|59008|anaphase-promoting complex subunit 5	AK168814|Anapc5|59008|anaphase-promoting complex subunit 5	AB041593|Anapc5|59008|anaphase-promoting complex subunit 5	AK151314|Anapc5|59008|anaphase-promoting complex subunit 5	AK151905|Anapc5|59008|anaphase-promoting complex subunit 5	AK152981|Anapc5|59008|anaphase-promoting complex subunit 5	AK153373|Anapc5|59008|anaphase-promoting complex subunit 5	AK153422|Anapc5|59008|anaphase-promoting complex subunit 5	AK159204|Anapc5|59008|anaphase-promoting complex subunit 5	AK148679|Anapc5|59008|anaphase-promoting complex subunit 5	AK049719|Anapc5|59008|anaphase-promoting complex subunit 5	AK169196|Anapc5|59008|anaphase-promoting complex subunit 5	AK088327|Anapc5|59008|anaphase-promoting complex subunit 5	NM_001042491|Anapc5|59008|anaphase-promoting complex subunit 5	NM_021505|Anapc5|59008|anaphase-promoting complex subunit 5
mm9_v1_chr14_-_67627598_67627723	0.595626	NKX6-1,2.p2	AK220143|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC049081|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK139950|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK004667|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC085237|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK018668|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK155040|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AY057069|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK013467|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK007920|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AF067395|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK168482|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK169391|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	NM_009761|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like
mm9_v1_chrX_+_130593867_130593899	0.594703	NKX6-1,2.p2	AK147438|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	AK088260|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	NM_133196|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2
mm9_v1_chr17_+_12571455_12571482	0.590776	NKX6-1,2.p2	BC014773|Plg|18815|plasminogen	NM_008877|Plg|18815|plasminogen
mm9_v1_chr9_+_35024031_35024058	0.582597	NKX6-1,2.p2	AK219602|Srpr|67398|signal recognition particle receptor ('docking protein')
mm9_v1_chr13_-_76081244_76081314	0.575953	NKX6-1,2.p2	BC005664|Rhobtb3|73296|Rho-related BTB domain containing 3	BC050836|Rhobtb3|73296|Rho-related BTB domain containing 3	NM_028493|Rhobtb3|73296|Rho-related BTB domain containing 3	AK129234|Rhobtb3|73296|Rho-related BTB domain containing 3
mm9_v1_chr6_-_48036471_48036546	0.575539	NKX6-1,2.p2	
mm9_v1_chr4_+_140258090_140258179	0.573812	NKX6-1,2.p2	AK186216|Rcc2|108911|regulator of chromosome condensation 2	AK129370|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr3_-_86352170_86352368	0.567616	NKX6-1,2.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr2_+_69627711_69627793	0.563513	NKX6-1,2.p2	BC025612|Phospho2|73373|phosphatase, orphan 2	AK159551|Phospho2|73373|phosphatase, orphan 2	AK010147|Phospho2|73373|phosphatase, orphan 2	AK006724|Phospho2|73373|phosphatase, orphan 2	NM_028521|Phospho2|73373|phosphatase, orphan 2
mm9_v1_chr14_-_111154292_111154370	0.561625	NKX6-1,2.p2	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr18_+_23910833_23910892	0.560595	NKX6-1,2.p2	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr2_+_174167321_174167402	0.558551	NKX6-1,2.p2	
mm9_v1_chr7_-_30945790_30945794	0.556234	NKX6-1,2.p2	AK033366|8430406M14Rik|399592|RIKEN cDNA 8430406M14 gene
mm9_v1_chr2_-_9800211_9800245	0.555484	NKX6-1,2.p2	AK156634|Gata3|14462|GATA binding protein 3	AK053728|Gata3|14462|GATA binding protein 3	AK090089|Gata3|14462|GATA binding protein 3	AK155549|Gata3|14462|GATA binding protein 3	NM_008091|Gata3|14462|GATA binding protein 3
mm9_v1_chr1_-_141456740_141456821	0.545811	NKX6-1,2.p2	BC111870|Cfhr1|50702|complement factor H-related 1	M29008|Cfhr1|50702|complement factor H-related 1	NM_015780|Cfhr1|50702|complement factor H-related 1
mm9_v1_chr7_-_150835497_150835570	0.544343	NKX6-1,2.p2	AJ278265|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AY046551|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AK012838|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	NM_023680|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	BC076592|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AY165626|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22	AY165627|Tnfrsf22|79202|tumor necrosis factor receptor superfamily, member 22
mm9_v1_chr6_+_17699145_17699592	0.54412	NKX6-1,2.p2	AK079107|St7|64213|suppression of tumorigenicity 7	AK132103|St7|64213|suppression of tumorigenicity 7	AK151550|St7|64213|suppression of tumorigenicity 7	NM_001083315|St7|64213|suppression of tumorigenicity 7	NM_022332|St7|64213|suppression of tumorigenicity 7	BC108418|St7|64213|suppression of tumorigenicity 7	AF234884|St7|64213|suppression of tumorigenicity 7	AF234885|St7|64213|suppression of tumorigenicity 7	AY007794|St7|64213|suppression of tumorigenicity 7	AY007795|St7|64213|suppression of tumorigenicity 7	AK036248|St7|64213|suppression of tumorigenicity 7	BC060630|St7|64213|suppression of tumorigenicity 7	BC051429|St7|64213|suppression of tumorigenicity 7	AY551821|St7|64213|suppression of tumorigenicity 7	AY551822|St7|64213|suppression of tumorigenicity 7	CT010245|St7|64213|suppression of tumorigenicity 7
mm9_v1_chr5_+_130292873_130292891	0.543132	NKX6-1,2.p2	AK149757|Cct6a|12466|chaperonin containing Tcp1, subunit 6a (zeta)
mm9_v1_chr11_-_86400309_86400486	0.539637	NKX6-1,2.p2	AK154616|Tmem49|75909|transmembrane protein 49
mm9_v1_chr1_+_88024759_88024856	0.534559	NKX6-1,2.p2	BC002203|Psmd1|70247|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
mm9_v1_chr2_-_74497475_74497613	0.532012	NKX6-1,2.p2	M93128|Evx2|14029|even skipped homeotic gene 2 homolog	NM_007967|Evx2|14029|even skipped homeotic gene 2 homolog	BC061467|Evx2|14029|even skipped homeotic gene 2 homolog
mm9_v1_chr2_+_13504271_13504305	0.529499	NKX6-1,2.p2	
mm9_v1_chr10_-_128397928_128398043	0.519043	NKX6-1,2.p2	BC024898|Mettl7b|71664|methyltransferase like 7B	AK002239|Mettl7b|71664|methyltransferase like 7B	NM_027853|Mettl7b|71664|methyltransferase like 7B
mm9_v1_chr13_-_4608352_4608430	0.51781	NKX6-1,2.p2	U68535|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK002507|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK007924|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK028605|Akr1e1|56043|aldo-keto reductase family 1, member E1	BC012692|Akr1e1|56043|aldo-keto reductase family 1, member E1	NM_018859|Akr1e1|56043|aldo-keto reductase family 1, member E1
mm9_v1_chr6_+_5340417_5340708	0.517064	NKX6-1,2.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr5_-_123271207_123271281	0.511105	NKX6-1,2.p2	AK152528|Anapc5|59008|anaphase-promoting complex subunit 5	BC010339|Anapc5|59008|anaphase-promoting complex subunit 5	AK013978|Anapc5|59008|anaphase-promoting complex subunit 5	AK031432|Anapc5|59008|anaphase-promoting complex subunit 5	AK168135|Anapc5|59008|anaphase-promoting complex subunit 5
mm9_v1_chr5_+_151325197_151325232	0.509696	NKX6-1,2.p2	AK148272|Brca2|12190|breast cancer 2	NM_009765|Brca2|12190|breast cancer 2	AK087379|Brca2|12190|breast cancer 2	NM_001081001|Brca2|12190|breast cancer 2	AK164598|Brca2|12190|breast cancer 2	U65594|Brca2|12190|breast cancer 2	AK145017|Brca2|12190|breast cancer 2
mm9_v1_chr15_-_56526052_56526100	0.506192	NKX6-1,2.p2	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr13_+_4433567_4433656	0.506084	NKX6-1,2.p2	AK149458|Akr1c6|83702|aldo-keto reductase family 1, member C6	NM_030611|Akr1c6|83702|aldo-keto reductase family 1, member C6	BC056643|Akr1c6|83702|aldo-keto reductase family 1, member C6	D45850|Akr1c6|83702|aldo-keto reductase family 1, member C6
mm9_v1_chr11_-_94515034_94515062	0.503111	NKX6-1,2.p2	BC089459|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr3_-_113277601_113277686	0.502941	NKX6-1,2.p2	AK029642|Amy1|11722|amylase 1, salivary	NM_007446|Amy1|11722|amylase 1, salivary	V00719|Amy1|11722|amylase 1, salivary
mm9_v1_chr14_-_109313298_109313300	0.494615	NKX6-1,2.p2	AK144290|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr10_-_126719287_126719357	0.492011	NKX6-1,2.p2	AK034474|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr9_-_115152895_115153139	0.491866	NKX6-1,2.p2	AK213927|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr14_+_57287083_57287181	0.486394	NKX6-1,2.p2	AB041598|Mphosph8|75339|M-phase phosphoprotein 8	NM_023773|Mphosph8|75339|M-phase phosphoprotein 8	AK018784|Mphosph8|75339|M-phase phosphoprotein 8	AK158773|Mphosph8|75339|M-phase phosphoprotein 8	AK159495|Mphosph8|75339|M-phase phosphoprotein 8	AK145432|Mphosph8|75339|M-phase phosphoprotein 8	AK145518|Mphosph8|75339|M-phase phosphoprotein 8	AK135958|Mphosph8|75339|M-phase phosphoprotein 8	BC079558|Mphosph8|75339|M-phase phosphoprotein 8	BC145164|Mphosph8|75339|M-phase phosphoprotein 8	BC145700|Mphosph8|75339|M-phase phosphoprotein 8
mm9_v1_chr14_-_34195326_34195332	0.482696	NKX6-1,2.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr4_-_138469861_138469885	0.480301	NKX6-1,2.p2	NM_028453|Otud3|73162|OTU domain containing 3
mm9_v1_chr7_+_24960063_24960104	0.479856	NKX6-1,2.p2	NM_001029933|Zfp114|232966|zinc finger protein 114	AK147817|Zfp114|232966|zinc finger protein 114	AF167317|Zfp114|232966|zinc finger protein 114	AK139475|Zfp114|232966|zinc finger protein 114
mm9_v1_chr10_+_97028409_97028443	0.479529	NKX6-1,2.p2	AK075737|Lum|17022|lumican	AK085240|Lum|17022|lumican	AK164774|Lum|17022|lumican
mm9_v1_chr8_+_73053287_73053425	0.47952	NKX6-1,2.p2	BC003739|Fkbp8|14232|FK506 binding protein 8	AY225340|Fkbp8|14232|FK506 binding protein 8	AK216136|Fkbp8|14232|FK506 binding protein 8	AF030635|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr1_-_134439500_134439516	0.477635	NKX6-1,2.p2	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr4_+_15211137_15211173	0.475916	NKX6-1,2.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr17_+_30272123_30272409	0.475065	NKX6-1,2.p2	BC027161|Zfand3|21769|zinc finger, AN1-type domain 3	EF437371|Zfand3|21769|zinc finger, AN1-type domain 3	BC024483|Zfand3|21769|zinc finger, AN1-type domain 3
mm9_v1_chr4_-_88368313_88368424	0.473587	NKX6-1,2.p2	AK129338|Klhl9|242521|kelch-like 9 (Drosophila)	BC094556|Klhl9|242521|kelch-like 9 (Drosophila)	AK049803|Klhl9|242521|kelch-like 9 (Drosophila)	AK033231|Klhl9|242521|kelch-like 9 (Drosophila)	NM_172871|Klhl9|242521|kelch-like 9 (Drosophila)
mm9_v1_chr2_-_84490666_84490763	0.470934	NKX6-1,2.p2	NM_001085453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC046589|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr7_-_110962416_110962439	0.469818	NKX6-1,2.p2	BC027434|Hbb-b2|15130|hemoglobin, beta adult minor chain	BC032264|Hbb-b2|15130|hemoglobin, beta adult minor chain	NM_016956|Hbb-b2|15130|hemoglobin, beta adult minor chain	AK168412|Hbb-b1|15129|hemoglobin, beta adult major chain	AK002394|Hbb-b1|15129|hemoglobin, beta adult major chain	AK005496|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011033|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011050|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011052|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011057|Hbb-b1|15129|hemoglobin, beta adult major chain	AK012551|Hbb-b1|15129|hemoglobin, beta adult major chain	AK167615|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168477|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168584|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168819|Hbb-b1|15129|hemoglobin, beta adult major chain	AK028067|Hbb-b1|15129|hemoglobin, beta adult major chain	NM_008220|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr8_-_96496001_96496082	0.458019	NKX6-1,2.p2	AK197102|Amfr|23802|autocrine motility factor receptor
mm9_v1_chr3_+_14641726_14641789	0.457616	NKX6-1,2.p2	AK162621|Car13|71934|carbonic anhydrase 13	NM_024495|Car13|71934|carbonic anhydrase 13	AK153080|Car13|71934|carbonic anhydrase 13	AK153353|Car13|71934|carbonic anhydrase 13	AK010166|Car13|71934|carbonic anhydrase 13	AK150871|Car13|71934|carbonic anhydrase 13	AK150897|Car13|71934|carbonic anhydrase 13	AK151978|Car13|71934|carbonic anhydrase 13	BC064050|Car13|71934|carbonic anhydrase 13	AF231123|Car13|71934|carbonic anhydrase 13	AK152124|Car13|71934|carbonic anhydrase 13	AK153258|Car13|71934|carbonic anhydrase 13	AK151519|Car13|71934|carbonic anhydrase 13
mm9_v1_chr3_+_66789621_66789657	0.456757	NKX6-1,2.p2	AK168539|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC038303|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK004742|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK169340|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC027501|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC083123|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr6_+_37820779_37820898	0.456247	NKX6-1,2.p2	AK080890|Trim24|21848|tripartite motif-containing 24	NM_145076|Trim24|21848|tripartite motif-containing 24	S78219|Trim24|21848|tripartite motif-containing 24	S78221|Trim24|21848|tripartite motif-containing 24	AK084870|Trim24|21848|tripartite motif-containing 24	BC056959|Trim24|21848|tripartite motif-containing 24
mm9_v1_chr8_+_87621368_87621429	0.455367	NKX6-1,2.p2	AK211157|Man2b1|17159|mannosidase 2, alpha B1
mm9_v1_chr11_+_75300330_75300364	0.454685	NKX6-1,2.p2	BC093481|Prpf8|192159|pre-mRNA processing factor 8	AK144232|Prpf8|192159|pre-mRNA processing factor 8
mm9_v1_chr2_-_72931338_72931457	0.448297	NKX6-1,2.p2	
mm9_v1_chr18_+_9707674_9707679	0.44828	NKX6-1,2.p2	AB038519|Colec12|140792|collectin sub-family member 12
mm9_v1_chr2_+_174171525_174171529	0.44509	NKX6-1,2.p2	AK187312|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK215851|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr15_+_102236709_102236810	0.444385	NKX6-1,2.p2	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr15_-_75751888_75752008	0.443579	NKX6-1,2.p2	BC026536|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK013214|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK002912|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK012519|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK019237|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK004291|Pycrl|66194|pyrroline-5-carboxylate reductase-like	NM_025412|Pycrl|66194|pyrroline-5-carboxylate reductase-like
mm9_v1_chr2_-_35892046_35892111	0.44246	NKX6-1,2.p2	
mm9_v1_chrX_-_102265380_102265463	0.441988	NKX6-1,2.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chrX_-_92853721_92853847	0.439918	NKX6-1,2.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr5_-_37087209_37087249	0.436772	NKX6-1,2.p2	AK134363|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr3_+_63780058_63780135	0.433073	NKX6-1,2.p2	AK143197|Gmps|229363|guanine monophosphate synthetase	NM_001033300|Gmps|229363|guanine monophosphate synthetase	AK169701|Gmps|229363|guanine monophosphate synthetase	AK169043|Gmps|229363|guanine monophosphate synthetase	AK167857|Gmps|229363|guanine monophosphate synthetase	AK049755|Gmps|229363|guanine monophosphate synthetase	BC138411|Gmps|229363|guanine monophosphate synthetase	BC138412|Gmps|229363|guanine monophosphate synthetase	AK168239|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr7_+_111367306_111367377	0.432728	NKX6-1,2.p2	AK040000|Trim6|94088|tripartite motif-containing 6	NM_001013616|Trim6|94088|tripartite motif-containing 6	AK021253|Trim6|94088|tripartite motif-containing 6	AK033396|Trim6|94088|tripartite motif-containing 6	AK049238|Trim6|94088|tripartite motif-containing 6	BC138965|Trim6|94088|tripartite motif-containing 6
mm9_v1_chr10_+_41249215_41249327	0.429979	NKX6-1,2.p2	
mm9_v1_chr19_-_58528838_58529066	0.427426	NKX6-1,2.p2	AB000800|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC040251|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC054378|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	NM_010279|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC011532|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AF015172|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr18_+_59222034_59222186	0.426259	NKX6-1,2.p2	NM_001167925|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	NM_173759|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	AK080452|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	AK048493|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene	BC075669|A730017C20Rik|225583|RIKEN cDNA A730017C20 gene
mm9_v1_chr4_-_62180914_62181170	0.424318	NKX6-1,2.p2	BC018236|Alad|17025|aminolevulinate, delta-, dehydratase	AK167673|Alad|17025|aminolevulinate, delta-, dehydratase	AK002300|Alad|17025|aminolevulinate, delta-, dehydratase	AK032908|Alad|17025|aminolevulinate, delta-, dehydratase	AK168119|Alad|17025|aminolevulinate, delta-, dehydratase	AK168132|Alad|17025|aminolevulinate, delta-, dehydratase	BC055930|Alad|17025|aminolevulinate, delta-, dehydratase	NM_008525|Alad|17025|aminolevulinate, delta-, dehydratase
mm9_v1_chr11_+_101303558_101303776	0.423983	NKX6-1,2.p2	NM_011289|Rpl27|19942|ribosomal protein L27	AF214527|Rpl27|19942|ribosomal protein L27	AK132027|Rpl27|19942|ribosomal protein L27	AK146291|Rpl27|19942|ribosomal protein L27	AK008120|Rpl27|19942|ribosomal protein L27	AK012566|Rpl27|19942|ribosomal protein L27	AK010627|Rpl27|19942|ribosomal protein L27	AK002945|Rpl27|19942|ribosomal protein L27	BC024366|Rpl27|19942|ribosomal protein L27	BC082284|Rpl27|19942|ribosomal protein L27	AK088211|Rpl27|19942|ribosomal protein L27	BC090395|Rpl27|19942|ribosomal protein L27
mm9_v1_chr1_+_191552133_191552202	0.422465	NKX6-1,2.p2	AK037646|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	NM_008976|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK086524|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK028783|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14
mm9_v1_chr1_+_166205728_166205836	0.422009	NKX6-1,2.p2	BC060044|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	NM_029115|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK076640|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK149168|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK015464|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	BC048086|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene
mm9_v1_chr7_+_116084192_116084237	0.421575	NKX6-1,2.p2	
mm9_v1_chr5_-_137748860_137748870	0.420917	NKX6-1,2.p2	BC066831|Srrt|83701|serrate RNA effector molecule homolog (Arabidopsis)
mm9_v1_chr11_+_114529837_114529938	0.420777	NKX6-1,2.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr3_-_81779636_81779675	0.420747	NKX6-1,2.p2	U24493|Tdo2|56720|tryptophan 2,3-dioxygenase	BC018390|Tdo2|56720|tryptophan 2,3-dioxygenase	NM_019911|Tdo2|56720|tryptophan 2,3-dioxygenase	AK132271|Tdo2|56720|tryptophan 2,3-dioxygenase
mm9_v1_chr19_+_32694494_32694583	0.418422	NKX6-1,2.p2	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr12_-_103807640_103807779	0.417405	NKX6-1,2.p2	AK194177|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr3_+_133902563_133902608	0.417375	NKX6-1,2.p2	BC082332|Cxxc4|319478|CXXC finger 4
mm9_v1_chr4_+_43460181_43460289	0.414258	NKX6-1,2.p2	
mm9_v1_chr6_-_71561919_71561988	0.408556	NKX6-1,2.p2	AK049243|Kdm3a|104263|lysine (K)-specific demethylase 3A
mm9_v1_chr7_-_29678773_29678890	0.407359	NKX6-1,2.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chrM_-_14069_14070	0.405615	NKX6-1,2.p2	AK138272|ND6|17722|NADH dehydrogenase subunit 6	AK140300|ND6|17722|NADH dehydrogenase subunit 6
mm9_v1_chr5_-_87335956_87335985	0.404768	NKX6-1,2.p2	BC028826|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	NM_153598|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	AK145951|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34
mm9_v1_chr2_+_150735306_150735352	0.402554	NKX6-1,2.p2	NM_001163476|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	NM_027014|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	AK013116|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)	BC027537|Gins1|69270|GINS complex subunit 1 (Psf1 homolog)
mm9_v1_chr13_+_23855536_23855563	0.40241	NKX6-1,2.p2	NM_030609|Hist1h1a|80838|histone cluster 1, H1a	BC116820|Hist1h1a|80838|histone cluster 1, H1a	BC116850|Hist1h1a|80838|histone cluster 1, H1a
mm9_v1_chr7_+_13615892_13615926	0.399803	NKX6-1,2.p2	AK193916|Trim28|21849|tripartite motif-containing 28	AK194102|Trim28|21849|tripartite motif-containing 28	AK190398|Trim28|21849|tripartite motif-containing 28	AK177374|Trim28|21849|tripartite motif-containing 28	AK189444|Trim28|21849|tripartite motif-containing 28	AK190056|Trim28|21849|tripartite motif-containing 28	AK190280|Trim28|21849|tripartite motif-containing 28	AK192048|Trim28|21849|tripartite motif-containing 28	AK196455|Trim28|21849|tripartite motif-containing 28	AK196856|Trim28|21849|tripartite motif-containing 28
mm9_v1_chr10_-_117252126_117252166	0.398713	NKX6-1,2.p2	
mm9_v1_chr13_+_21454688_21454753	0.398104	NKX6-1,2.p2	AK129138|Zscan12|22758|zinc finger and SCAN domain containing 12	NM_016684|Zscan12|22758|zinc finger and SCAN domain containing 12	AK075886|Zscan12|22758|zinc finger and SCAN domain containing 12	AK139837|Zscan12|22758|zinc finger and SCAN domain containing 12	AK142005|Zscan12|22758|zinc finger and SCAN domain containing 12	BC027041|Zscan12|22758|zinc finger and SCAN domain containing 12
mm9_v1_chr6_+_136467388_136467391	0.397475	NKX6-1,2.p2	BC060246|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr8_+_94190341_94190551	0.396259	NKX6-1,2.p2	
mm9_v1_chr18_+_35750406_35750586	0.396218	NKX6-1,2.p2	AK139050|Matr3|17184|matrin 3	AK084822|Matr3|17184|matrin 3	AK148059|Matr3|17184|matrin 3
mm9_v1_chr5_+_147656646_147656733	0.39491	NKX6-1,2.p2	NM_026864|Rasl11a|68895|RAS-like, family 11, member A	AK004371|Rasl11a|68895|RAS-like, family 11, member A
mm9_v1_chr8_+_73054891_73055139	0.394621	NKX6-1,2.p2	AK177460|Fkbp8|14232|FK506 binding protein 8	AK184741|Fkbp8|14232|FK506 binding protein 8	AK182349|Fkbp8|14232|FK506 binding protein 8	AK197324|Fkbp8|14232|FK506 binding protein 8	AK209719|Fkbp8|14232|FK506 binding protein 8	AK212094|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr9_-_21921573_21921635	0.392659	NKX6-1,2.p2	BC019870|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	BC024488|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK014116|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK089052|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK002505|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)	AK003614|Elof1|66126|elongation factor 1 homolog (ELF1, S. cerevisiae)
mm9_v1_chr5_-_17355533_17355611	0.392549	NKX6-1,2.p2	AK172162|Cd36|12491|CD36 antigen	BC010262|Cd36|12491|CD36 antigen	AK150648|Cd36|12491|CD36 antigen	NM_001159556|Cd36|12491|CD36 antigen	NM_001159557|Cd36|12491|CD36 antigen
mm9_v1_chr5_-_122906470_122906515	0.38589	NKX6-1,2.p2	AK081191|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr1_+_42908077_42908173	0.382156	NKX6-1,2.p2	NM_023514|Mrps9|69527|mitochondrial ribosomal protein S9	AK049465|Mrps9|69527|mitochondrial ribosomal protein S9	AK144656|Mrps9|69527|mitochondrial ribosomal protein S9	AK150985|Mrps9|69527|mitochondrial ribosomal protein S9	AK031497|Mrps9|69527|mitochondrial ribosomal protein S9	AK009082|Mrps9|69527|mitochondrial ribosomal protein S9	BC116437|Mrps9|69527|mitochondrial ribosomal protein S9
mm9_v1_chr11_-_30000031_30000152	0.379234	NKX6-1,2.p2	AK079934|Spnb2|20742|spectrin beta 2
mm9_v1_chr2_+_163519756_163519774	0.378335	NKX6-1,2.p2	NM_011106|Pkig|18769|protein kinase inhibitor, gamma	U97170|Pkig|18769|protein kinase inhibitor, gamma
mm9_v1_chr9_+_35366065_35366179	0.37732	NKX6-1,2.p2	AK030639|Pus3|67049|pseudouridine synthase 3
mm9_v1_chr11_+_87032504_87032509	0.377311	NKX6-1,2.p2	AK004018|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr11_-_98862163_98862321	0.377022	NKX6-1,2.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr1_-_151808361_151808434	0.375246	NKX6-1,2.p2	M72394|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK144750|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK172121|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	BC003816|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	NM_008869|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)
mm9_v1_chr5_-_100465086_100465197	0.372022	NKX6-1,2.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr6_+_134961629_134961652	0.371454	NKX6-1,2.p2	NM_026360|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK010310|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132242|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132244|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK076982|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC060168|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC095944|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
mm9_v1_chr9_-_115152261_115152330	0.365775	NKX6-1,2.p2	
mm9_v1_chr18_-_67712374_67712430	0.364626	NKX6-1,2.p2	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chrY_+_234230_234474	0.363142	NKX6-1,2.p2	AK047790|Kdm5d|20592|lysine (K)-specific demethylase 5D	NM_011419|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK141096|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK140971|Kdm5d|20592|lysine (K)-specific demethylase 5D	BC060077|Kdm5d|20592|lysine (K)-specific demethylase 5D	AF127244|Kdm5d|20592|lysine (K)-specific demethylase 5D	AB221607|Kdm5d|20592|lysine (K)-specific demethylase 5D	Z29652|Kdm5d|20592|lysine (K)-specific demethylase 5D
mm9_v1_chr7_+_52965052_52965376	0.362965	NKX6-1,2.p2	AK192990|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr3_+_94641479_94641499	0.362278	NKX6-1,2.p2	NM_001165948|Pogz|229584|pogo transposable element with ZNF domain	NM_172683|Pogz|229584|pogo transposable element with ZNF domain	BC065134|Pogz|229584|pogo transposable element with ZNF domain	BC066108|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr17_+_35998262_35998322	0.362196	NKX6-1,2.p2	BC021750|Nrm|106582|nurim (nuclear envelope membrane protein)	NM_134122|Nrm|106582|nurim (nuclear envelope membrane protein)	BC026576|Nrm|106582|nurim (nuclear envelope membrane protein)
mm9_v1_chr2_+_151398367_151398403	0.356263	NKX6-1,2.p2	BC005556|Sdcbp2|228765|syndecan binding protein (syntenin) 2	NM_145535|Sdcbp2|228765|syndecan binding protein (syntenin) 2	AK144452|Sdcbp2|228765|syndecan binding protein (syntenin) 2	AK160483|Sdcbp2|228765|syndecan binding protein (syntenin) 2	AK136572|Sdcbp2|228765|syndecan binding protein (syntenin) 2
mm9_v1_chr8_+_15011024_15011024	0.354884	NKX6-1,2.p2	AK013531|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	NM_029116|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr1_-_93295351_93295371	0.353347	NKX6-1,2.p2	BC011427|Ilkap|67444|integrin-linked kinase-associated serine/threonine phosphatase 2C	BC026953|Ilkap|67444|integrin-linked kinase-associated serine/threonine phosphatase 2C	NM_023343|Ilkap|67444|integrin-linked kinase-associated serine/threonine phosphatase 2C
mm9_v1_chr9_+_54758322_54758381	0.352251	NKX6-1,2.p2	AK038058|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr10_-_116782524_116782604	0.349714	NKX6-1,2.p2	AK086495|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr5_+_145965427_145965536	0.344015	NKX6-1,2.p2	NM_001167944|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	NM_016683|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	AK173086|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	AK019484|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	BC060248|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5
mm9_v1_chr7_+_7124063_7124102	0.343487	NKX6-1,2.p2	NM_146179|Zfp418|232854|zinc finger protein 418	AK054428|Zfp418|232854|zinc finger protein 418	BC024761|Zfp418|232854|zinc finger protein 418	BC026490|Zfp418|232854|zinc finger protein 418	AK039147|Zfp418|232854|zinc finger protein 418
mm9_v1_chr9_-_49311823_49311910	0.342198	NKX6-1,2.p2	X07233|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr15_-_82979687_82979804	0.340709	NKX6-1,2.p2	BC046505|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK167552|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK081139|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	BC037652|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK150130|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK052722|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	BC058225|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK083924|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	NM_178627|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK087446|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK220221|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK152060|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3
mm9_v1_chr6_-_99216494_99216530	0.338512	NKX6-1,2.p2	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr1_-_53353810_53353878	0.338241	NKX6-1,2.p2	AK045010|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	BC028939|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	NM_153556|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	AK140689|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)
mm9_v1_chr6_+_89593981_89593999	0.337009	NKX6-1,2.p2	AK041046|Txnrd3|232223|thioredoxin reductase 3	NM_001178058|Txnrd3|232223|thioredoxin reductase 3	NM_001178059|Txnrd3|232223|thioredoxin reductase 3	NM_001178060|Txnrd3|232223|thioredoxin reductase 3	NM_153162|Txnrd3|232223|thioredoxin reductase 3	AK012699|Txnrd3|232223|thioredoxin reductase 3	AK080362|Txnrd3|232223|thioredoxin reductase 3	AK134987|Txnrd3|232223|thioredoxin reductase 3
mm9_v1_chr11_-_29447830_29448039	0.335913	NKX6-1,2.p2	BC002108|Rps27a|78294|ribosomal protein S27A	AK018706|Rps27a|78294|ribosomal protein S27A	NM_001033865|Rps27a|78294|ribosomal protein S27A	NM_024277|Rps27a|78294|ribosomal protein S27A
mm9_v1_chr9_-_119932620_119932715	0.333236	NKX6-1,2.p2	BC117959|Xirp1|22437|xin actin-binding repeat containing 1	BC117960|Xirp1|22437|xin actin-binding repeat containing 1	AF051945|Xirp1|22437|xin actin-binding repeat containing 1	NM_011724|Xirp1|22437|xin actin-binding repeat containing 1
mm9_v1_chr2_-_181333786_181333936	0.332365	NKX6-1,2.p2	AK053884|Samd10|229011|sterile alpha motif domain containing 10	AK053048|Samd10|229011|sterile alpha motif domain containing 10	BC052921|Samd10|229011|sterile alpha motif domain containing 10	NM_172676|Samd10|229011|sterile alpha motif domain containing 10	AK171151|Samd10|229011|sterile alpha motif domain containing 10	BC019475|Samd10|229011|sterile alpha motif domain containing 10	AK164204|Samd10|229011|sterile alpha motif domain containing 10
mm9_v1_chr5_-_100392845_100392900	0.321407	NKX6-1,2.p2	AK053251|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr6_+_125072851_125072907	0.318393	NKX6-1,2.p2	AK148402|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr9_+_120868808_120869094	0.316299	NKX6-1,2.p2	AK208830|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209437|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK209047|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr18_-_72367655_72367683	0.314891	NKX6-1,2.p2	
mm9_v1_chr10_-_12912880_12912990	0.313683	NKX6-1,2.p2	AK011491|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC069962|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC067062|Ltv1|353258|LTV1 homolog (S. cerevisiae)	NM_181470|Ltv1|353258|LTV1 homolog (S. cerevisiae)
mm9_v1_chr9_-_44728745_44728785	0.313514	NKX6-1,2.p2	BC094407|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	Y17223|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK008002|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK011842|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK019343|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	BC086880|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK011038|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK011046|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK005175|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK008087|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	AK009612|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g	BC031384|Atp5l|27425|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g
mm9_v1_chr11_-_102046532_102046628	0.313449	NKX6-1,2.p2	AK081685|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK011126|Lsm12|268490|LSM12 homolog (S. cerevisiae)	BC027784|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK132889|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK075668|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK151118|Lsm12|268490|LSM12 homolog (S. cerevisiae)	NM_172947|Lsm12|268490|LSM12 homolog (S. cerevisiae)
mm9_v1_chr17_-_46168654_46168719	0.312827	NKX6-1,2.p2	AY707864|Vegfa|22339|vascular endothelial growth factor A	AY750956|Vegfa|22339|vascular endothelial growth factor A	AY750957|Vegfa|22339|vascular endothelial growth factor A	EF028705|Vegfa|22339|vascular endothelial growth factor A	BC061468|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr13_+_49678115_49678143	0.311782	NKX6-1,2.p2	AB007848|Omd|27047|osteomodulin	NM_012050|Omd|27047|osteomodulin	BC095997|Omd|27047|osteomodulin
mm9_v1_chr15_+_80782753_80782915	0.30958	NKX6-1,2.p2	AK201011|Adsl|11564|adenylosuccinate lyase
mm9_v1_chr14_+_67852128_67852128	0.307725	NKX6-1,2.p2	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr5_-_134790277_134790348	0.307088	NKX6-1,2.p2	BC047387|Gtf2i|14886|general transcription factor II I
mm9_v1_chr19_+_9026569_9026592	0.306247	NKX6-1,2.p2	
mm9_v1_chr2_-_79969429_79969614	0.305565	NKX6-1,2.p2	AK050004|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001159582|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK021279|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr18_+_35776026_35776084	0.302074	NKX6-1,2.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr15_-_78893275_78893359	0.300742	NKX6-1,2.p2	BC014743|Ankrd54|223690|ankyrin repeat domain 54	NM_144849|Ankrd54|223690|ankyrin repeat domain 54	DQ884878|Ankrd54|223690|ankyrin repeat domain 54	AK133785|Ankrd54|223690|ankyrin repeat domain 54	AK050440|Ankrd54|223690|ankyrin repeat domain 54	AK143625|Ankrd54|223690|ankyrin repeat domain 54	AK084500|Ankrd54|223690|ankyrin repeat domain 54
mm9_v1_chr1_-_129998984_129999039	0.297685	NKX6-1,2.p2	BC066035|Zranb3|226409|zinc finger, RAN-binding domain containing 3	NM_027678|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK042139|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK083641|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK084943|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK085488|Zranb3|226409|zinc finger, RAN-binding domain containing 3
mm9_v1_chr8_+_108424267_108424373	0.294016	NKX6-1,2.p2	AK153861|Pskh1|244631|protein serine kinase H1	AK053397|Pskh1|244631|protein serine kinase H1	AK154570|Pskh1|244631|protein serine kinase H1	AK166338|Pskh1|244631|protein serine kinase H1	BC050128|Pskh1|244631|protein serine kinase H1	NM_173432|Pskh1|244631|protein serine kinase H1
mm9_v1_chr15_+_96199877_96199934	0.291697	NKX6-1,2.p2	AK014481|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr3_+_90346956_90347018	0.29168	NKX6-1,2.p2	AK002991|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr14_-_20796199_20796254	0.291636	NKX6-1,2.p2	AK075698|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK160396|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK012405|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr8_+_26707480_26707573	0.291055	NKX6-1,2.p2	AK054186|D830025C05Rik|100042416|RIKEN cDNA D830025C05 gene	AK085892|D830025C05Rik|100042416|RIKEN cDNA D830025C05 gene
mm9_v1_chr4_-_136891931_136891995	0.289028	NKX6-1,2.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chrX_+_135751704_135751704	0.288105	NKX6-1,2.p2	NM_001164631|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164632|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164633|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr2_+_80159376_80159440	0.285933	NKX6-1,2.p2	AK179556|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10
mm9_v1_chr10_+_45297632_45297737	0.285832	NKX6-1,2.p2	NM_172473|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	AK156958|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	AK042879|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	BC120695|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	BC120697|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
mm9_v1_chr6_+_136467315_136467378	0.283035	NKX6-1,2.p2	AK082697|Atf7ip|54343|activating transcription factor 7 interacting protein	AK167542|Atf7ip|54343|activating transcription factor 7 interacting protein	BC048827|Atf7ip|54343|activating transcription factor 7 interacting protein	AK134252|Atf7ip|54343|activating transcription factor 7 interacting protein	BC052460|Atf7ip|54343|activating transcription factor 7 interacting protein	NM_019426|Atf7ip|54343|activating transcription factor 7 interacting protein	AJ132702|Atf7ip|54343|activating transcription factor 7 interacting protein	BC022714|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr10_-_36858426_36858478	0.282402	NKX6-1,2.p2	
mm9_v1_chr11_-_5703677_5703735	0.281954	NKX6-1,2.p2	BC010750|Pgam2|56012|phosphoglycerate mutase 2	AK146703|Pgam2|56012|phosphoglycerate mutase 2	AK169019|Pgam2|56012|phosphoglycerate mutase 2	AF029843|Pgam2|56012|phosphoglycerate mutase 2
mm9_v1_chrM_-_622_663	0.281483	NKX6-1,2.p2	
mm9_v1_chr12_-_16746933_16747013	0.280981	NKX6-1,2.p2	AK045057|Greb1|268527|gene regulated by estrogen in breast cancer protein
mm9_v1_chr1_+_53370483_53370609	0.280957	NKX6-1,2.p2	BC030671|Osgepl1|72085|O-sialoglycoprotein endopeptidase-like 1	BC058172|Osgepl1|72085|O-sialoglycoprotein endopeptidase-like 1	AK045669|Osgepl1|72085|O-sialoglycoprotein endopeptidase-like 1	NM_028091|Osgepl1|72085|O-sialoglycoprotein endopeptidase-like 1	AK137332|Osgepl1|72085|O-sialoglycoprotein endopeptidase-like 1	AK011265|Osgepl1|72085|O-sialoglycoprotein endopeptidase-like 1	AK137402|Osgepl1|72085|O-sialoglycoprotein endopeptidase-like 1
mm9_v1_chr17_-_26232411_26232456	0.280095	NKX6-1,2.p2	AF153451|Nme4|56520|non-metastatic cells 4, protein expressed in	NM_019731|Nme4|56520|non-metastatic cells 4, protein expressed in	AK011573|Nme4|56520|non-metastatic cells 4, protein expressed in	AK017724|Nme4|56520|non-metastatic cells 4, protein expressed in	AF288690|Nme4|56520|non-metastatic cells 4, protein expressed in	BC027277|Nme4|56520|non-metastatic cells 4, protein expressed in	AK012805|Nme4|56520|non-metastatic cells 4, protein expressed in
mm9_v1_chr11_-_86900256_86900280	0.279375	NKX6-1,2.p2	AK004714|1200011M11Rik|74133|RIKEN cDNA 1200011M11 gene	BC020005|1200011M11Rik|74133|RIKEN cDNA 1200011M11 gene	NM_024262|1200011M11Rik|74133|RIKEN cDNA 1200011M11 gene
mm9_v1_chr2_+_37307751_37307773	0.278516	NKX6-1,2.p2	AK044346|Rabgap1|227800|RAB GTPase activating protein 1	NM_001033960|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr2_-_172195998_172196037	0.277738	NKX6-1,2.p2	U69106|Aurka|20878|aurora kinase A	BC014711|Aurka|20878|aurora kinase A	NM_011497|Aurka|20878|aurora kinase A	BC005425|Aurka|20878|aurora kinase A	U80932|Aurka|20878|aurora kinase A	AK085861|Aurka|20878|aurora kinase A	AK169363|Aurka|20878|aurora kinase A	AK077513|Aurka|20878|aurora kinase A	AK145968|Aurka|20878|aurora kinase A
mm9_v1_chr5_+_87233239_87233314	0.277535	NKX6-1,2.p2	AK135309|Ythdc1|231386|YTH domain containing 1
mm9_v1_chr11_+_98725073_98725122	0.277412	NKX6-1,2.p2	BC057854|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr8_+_4238780_4238837	0.276826	NKX6-1,2.p2	AK165184|Map2k7|26400|mitogen-activated protein kinase kinase 7	BC070467|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060945|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060946|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060947|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK031137|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chrX_-_162948399_162948409	0.276117	NKX6-1,2.p2	AK140929|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	BC067008|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	NM_001007577|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing
mm9_v1_chr8_+_58773380_58773394	0.276093	NKX6-1,2.p2	AK002472|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)	AK146038|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)	BC021157|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)	U44389|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm9_v1_chr9_+_46081146_46081375	0.27563	NKX6-1,2.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr9_+_64026089_64026214	0.275491	NKX6-1,2.p2	
mm9_v1_chr4_+_126698629_126698705	0.275466	NKX6-1,2.p2	AY034062|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr9_+_14305110_14305173	0.275404	NKX6-1,2.p2	AK003834|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK002864|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK145249|Cwc15|66070|CWC15 homolog (S. cerevisiae)	BC004726|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK013670|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK167776|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK168365|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK003202|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AJ250394|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr12_-_74147683_74147691	0.274236	NKX6-1,2.p2	BC023304|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr6_+_89594017_89594072	0.271893	NKX6-1,2.p2	BC076605|Txnrd3|232223|thioredoxin reductase 3	AK135794|Txnrd3|232223|thioredoxin reductase 3	AF349659|Txnrd3|232223|thioredoxin reductase 3
mm9_v1_chr9_+_120019521_120019545	0.271656	NKX6-1,2.p2	AK167737|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr10_-_117229719_117229775	0.270609	NKX6-1,2.p2	AK133938|Nup107|103468|nucleoporin 107	BC057591|Nup107|103468|nucleoporin 107	AK088625|Nup107|103468|nucleoporin 107	AK088303|Nup107|103468|nucleoporin 107	BC092261|Nup107|103468|nucleoporin 107	AK043454|Nup107|103468|nucleoporin 107	AK161665|Nup107|103468|nucleoporin 107	AK088069|Nup107|103468|nucleoporin 107	NM_134010|Nup107|103468|nucleoporin 107
mm9_v1_chrM_+_9458_9465	0.270378	NKX6-1,2.p2	AK139029|ND3|17718|NADH dehydrogenase subunit 3
mm9_v1_chr15_+_80453912_80453951	0.268969	NKX6-1,2.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr7_-_149571459_149571512	0.268922	NKX6-1,2.p2	AK197320|Ctsd|13033|cathepsin D	AK216050|Ctsd|13033|cathepsin D
mm9_v1_chr15_-_73015227_73015327	0.267267	NKX6-1,2.p2	BC128379|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2	BC129922|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2	AB081472|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2	BC096465|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr1_-_145624074_145624149	0.266389	NKX6-1,2.p2	U66843|Trove2|20822|TROVE domain family, member 2	AK167379|Trove2|20822|TROVE domain family, member 2	AK167555|Trove2|20822|TROVE domain family, member 2	AK167645|Trove2|20822|TROVE domain family, member 2
mm9_v1_chr8_-_72440219_72440255	0.264355	NKX6-1,2.p2	BC031407|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr1_-_99666564_99666675	0.263695	NKX6-1,2.p2	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr8_+_42416046_42416071	0.263321	NKX6-1,2.p2	AK040482|Pcm1|18536|pericentriolar material 1
mm9_v1_chr6_-_128380651_128380781	0.262523	NKX6-1,2.p2	
mm9_v1_chrX_+_103778524_103778524	0.261913	NKX6-1,2.p2	AK044840|Gm5127|331493|predicted gene 5127	AK142438|Gm5127|331493|predicted gene 5127	NM_001033541|Gm5127|331493|predicted gene 5127
mm9_v1_chr10_+_42580317_42580598	0.261683	NKX6-1,2.p2	NM_172938|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AF397911|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK034171|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	BC043310|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK047972|Scml4|268297|sex comb on midleg-like 4 (Drosophila)
mm9_v1_chr3_-_89832276_89832298	0.26095	NKX6-1,2.p2	AK082804|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr11_+_96668506_96668525	0.258761	NKX6-1,2.p2	AK080243|Cbx1|12412|chromobox homolog 1 (Drosophila HP1 beta)	AK088236|Cbx1|12412|chromobox homolog 1 (Drosophila HP1 beta)
mm9_v1_chr8_-_24301206_24301672	0.258487	NKX6-1,2.p2	AK178773|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK182757|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK204634|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AY489184|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK188390|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	BC031767|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm9_v1_chr2_-_68309996_68310080	0.256233	NKX6-1,2.p2	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr5_-_72559220_72559438	0.255948	NKX6-1,2.p2	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr11_+_115106897_115107042	0.253435	NKX6-1,2.p2	
mm9_v1_chr18_+_35966147_35966251	0.250852	NKX6-1,2.p2	AK075844|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr17_+_47736273_47736367	0.25002	NKX6-1,2.p2	AK191156|Ccnd3|12445|cyclin D3	AK196525|Ccnd3|12445|cyclin D3	AK196937|Ccnd3|12445|cyclin D3	AK201151|Ccnd3|12445|cyclin D3	AK208250|Ccnd3|12445|cyclin D3	AK209470|Ccnd3|12445|cyclin D3
mm9_v1_chr8_-_108462291_108462291	0.250012	NKX6-1,2.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr7_+_77510266_77510283	0.250009	NKX6-1,2.p2	AK045070|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr13_+_94444337_94444432	0.249144	NKX6-1,2.p2	BC089599|Dmgdh|74129|dimethylglycine dehydrogenase precursor	NM_028772|Dmgdh|74129|dimethylglycine dehydrogenase precursor	AK004755|Dmgdh|74129|dimethylglycine dehydrogenase precursor
mm9_v1_chr8_+_74066795_74066869	0.247509	NKX6-1,2.p2	BC020119|Fam125a|73711|family with sequence similarity 125, member A	NM_028617|Fam125a|73711|family with sequence similarity 125, member A	BC087734|Fam125a|73711|family with sequence similarity 125, member A	AK003644|Fam125a|73711|family with sequence similarity 125, member A	BC027419|Fam125a|73711|family with sequence similarity 125, member A
mm9_v1_chr6_+_17616617_17616660	0.247344	NKX6-1,2.p2	AK004237|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr11_+_108811065_108811123	0.246882	NKX6-1,2.p2	
mm9_v1_chr5_+_7960430_7960493	0.24568	NKX6-1,2.p2	AK040760|Steap4|117167|STEAP family member 4	AJ319746|Steap4|117167|STEAP family member 4	BC006651|Steap4|117167|STEAP family member 4	NM_054098|Steap4|117167|STEAP family member 4	AY029778|Steap4|117167|STEAP family member 4
mm9_v1_chrM_+_9875_9905	0.244872	NKX6-1,2.p2	AK140187|ND4L|17720|NADH dehydrogenase subunit 4L	AK157367|ND4L|17720|NADH dehydrogenase subunit 4L	AK144853|ND4L|17720|NADH dehydrogenase subunit 4L	AK153747|ND4L|17720|NADH dehydrogenase subunit 4L
mm9_v1_chr1_-_39608846_39608882	0.244448	NKX6-1,2.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr6_-_3444484_3444497	0.244121	NKX6-1,2.p2	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr18_-_12914177_12914270	0.243377	NKX6-1,2.p2	AK209493|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr3_-_10208575_10208582	0.240309	NKX6-1,2.p2	AK003143|Fabp4|11770|fatty acid binding protein 4, adipocyte	AK088535|Fabp4|11770|fatty acid binding protein 4, adipocyte	NM_024406|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr10_+_89280918_89280988	0.239818	NKX6-1,2.p2	AK079985|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK046432|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK008586|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr1_+_137732961_137733002	0.239775	NKX6-1,2.p2	NM_001130174|Tnnt2|21956|troponin T2, cardiac	NM_001130175|Tnnt2|21956|troponin T2, cardiac	NM_001130177|Tnnt2|21956|troponin T2, cardiac	NM_001130178|Tnnt2|21956|troponin T2, cardiac	NM_001130179|Tnnt2|21956|troponin T2, cardiac	NM_001130180|Tnnt2|21956|troponin T2, cardiac	NM_001130181|Tnnt2|21956|troponin T2, cardiac	NM_011619|Tnnt2|21956|troponin T2, cardiac	AK086260|Tnnt2|21956|troponin T2, cardiac	AK146945|Tnnt2|21956|troponin T2, cardiac	AK163786|Tnnt2|21956|troponin T2, cardiac	AK164592|Tnnt2|21956|troponin T2, cardiac	AK168393|Tnnt2|21956|troponin T2, cardiac	AK169061|Tnnt2|21956|troponin T2, cardiac	L47600|Tnnt2|21956|troponin T2, cardiac	L47599|Tnnt2|21956|troponin T2, cardiac	L47552|Tnnt2|21956|troponin T2, cardiac	L47551|Tnnt2|21956|troponin T2, cardiac	L47549|Tnnt2|21956|troponin T2, cardiac	NM_001136083|Tnnt2|21956|troponin T2, cardiac	L47550|Tnnt2|21956|troponin T2, cardiac
mm9_v1_chr5_-_92497375_92497432	0.238661	NKX6-1,2.p2	AK200302|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr17_-_51951378_51951378	0.236154	NKX6-1,2.p2	AK158518|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163630|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr5_-_20457608_20457646	0.236106	NKX6-1,2.p2	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chr17_-_27889845_27889920	0.235293	NKX6-1,2.p2	AK081219|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK082788|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed
mm9_v1_chr1_-_135557925_135557932	0.233437	NKX6-1,2.p2	BC066163|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr19_+_38470458_38470592	0.232565	NKX6-1,2.p2	BC137663|Tmem20|240660|transmembrane protein 20	BC137664|Tmem20|240660|transmembrane protein 20	AK041618|Tmem20|240660|transmembrane protein 20	NM_175507|Tmem20|240660|transmembrane protein 20	AK030517|Tmem20|240660|transmembrane protein 20	AK171987|Tmem20|240660|transmembrane protein 20	AK052365|Tmem20|240660|transmembrane protein 20
mm9_v1_chr14_+_62218348_62218392	0.231266	NKX6-1,2.p2	NM_023233|Trim13|66597|tripartite motif-containing 13	AK013959|Trim13|66597|tripartite motif-containing 13	AK017850|Trim13|66597|tripartite motif-containing 13
mm9_v1_chrX_+_106290703_106290922	0.22971	NKX6-1,2.p2	BC043055|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	NM_019989|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK218315|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	BC034161|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151871|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK165995|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK146588|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK150604|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151095|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK049929|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151501|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AJ272504|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like
mm9_v1_chr13_-_55201578_55201611	0.229579	NKX6-1,2.p2	BC051659|Uimc1|20184|ubiquitin interaction motif containing 1	BC066220|Uimc1|20184|ubiquitin interaction motif containing 1	AK083342|Uimc1|20184|ubiquitin interaction motif containing 1	BC037092|Uimc1|20184|ubiquitin interaction motif containing 1	BC040808|Uimc1|20184|ubiquitin interaction motif containing 1
mm9_v1_chr8_-_39724524_39724561	0.227703	NKX6-1,2.p2	AK048960|Sgcz|244431|sarcoglycan zeta	AK136779|Sgcz|244431|sarcoglycan zeta	NM_145841|Sgcz|244431|sarcoglycan zeta
mm9_v1_chr2_+_152106052_152106158	0.227531	NKX6-1,2.p2	AK042898|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr14_-_71107810_71107841	0.227147	NKX6-1,2.p2	AY550930|Xpo7|65246|exportin 7	AK143729|Xpo7|65246|exportin 7
mm9_v1_chr11_+_20443168_20443285	0.226588	NKX6-1,2.p2	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chrX_+_20276404_20276539	0.225855	NKX6-1,2.p2	AK177013|Cdk16|18555|cyclin-dependent kinase 16	AK212751|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr2_+_174167172_174167173	0.225675	NKX6-1,2.p2	BC048834|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr4_+_55093796_55093934	0.224804	NKX6-1,2.p2	AK035041|Zfp462|242466|zinc finger protein 462
mm9_v1_chr6_-_148719426_148719561	0.224426	NKX6-1,2.p2	X67534|Ipo8|320727|importin 8
mm9_v1_chr3_-_88258754_88258795	0.221142	NKX6-1,2.p2	AK035918|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr11_+_54679881_54679983	0.220192	NKX6-1,2.p2	BC070415|Hint1|15254|histidine triad nucleotide binding protein 1	AK012433|Hint1|15254|histidine triad nucleotide binding protein 1	AK002965|Hint1|15254|histidine triad nucleotide binding protein 1	NM_008248|Hint1|15254|histidine triad nucleotide binding protein 1	BC080296|Hint1|15254|histidine triad nucleotide binding protein 1	U60001|Hint1|15254|histidine triad nucleotide binding protein 1
mm9_v1_chr4_-_87452140_87452217	0.217233	NKX6-1,2.p2	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr10_+_51246145_51246210	0.215821	NKX6-1,2.p2	
mm9_v1_chr10_+_62849310_62849422	0.215287	NKX6-1,2.p2	NM_013888|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AK032207|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AF132906|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC013501|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC071211|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12
mm9_v1_chr8_-_73421276_73421316	0.215105	NKX6-1,2.p2	BC024609|Rpl18a|76808|ribosomal protein L18A	AK150820|Rpl18a|76808|ribosomal protein L18A	AK152611|Rpl18a|76808|ribosomal protein L18A	AK168258|Rpl18a|76808|ribosomal protein L18A	AK010983|Rpl18a|76808|ribosomal protein L18A	AK146543|Rpl18a|76808|ribosomal protein L18A	AK161942|Rpl18a|76808|ribosomal protein L18A	AK162047|Rpl18a|76808|ribosomal protein L18A	NM_001111116|Gm15427|100041686|predicted pseudogene 15427
mm9_v1_chr5_+_111717505_111717674	0.214565	NKX6-1,2.p2	AK132014|Ttc28|209683|tetratricopeptide repeat domain 28	AK172165|Ttc28|209683|tetratricopeptide repeat domain 28
mm9_v1_chrM_+_12383_12506	0.213776	NKX6-1,2.p2	
mm9_v1_chr15_-_72891441_72891633	0.212016	NKX6-1,2.p2	AK156739|Trappc9|76510|trafficking protein particle complex 9	AK013485|Trappc9|76510|trafficking protein particle complex 9	AK028504|Trappc9|76510|trafficking protein particle complex 9	AK029106|Trappc9|76510|trafficking protein particle complex 9	AK031788|Trappc9|76510|trafficking protein particle complex 9	AK138682|Trappc9|76510|trafficking protein particle complex 9	BC070463|Trappc9|76510|trafficking protein particle complex 9	NM_001164641|Trappc9|76510|trafficking protein particle complex 9	NM_001164642|Trappc9|76510|trafficking protein particle complex 9	NM_001164643|Trappc9|76510|trafficking protein particle complex 9	NM_180662|Trappc9|76510|trafficking protein particle complex 9
mm9_v1_chr9_-_103125934_103125973	0.211009	NKX6-1,2.p2	BC018573|Trf|22041|transferrin
mm9_v1_chr4_-_122817165_122817212	0.21048	NKX6-1,2.p2	AF182825|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	BC045154|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	AK008177|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	NM_019489|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	AK042165|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)
mm9_v1_chr11_+_43495499_43495538	0.210387	NKX6-1,2.p2	NM_001164231|Pwwp2a|70802|PWWP domain containing 2A	NM_027557|Pwwp2a|70802|PWWP domain containing 2A	AK173305|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr1_-_185857753_185857876	0.20941	NKX6-1,2.p2	NM_028516|1700056E22Rik|73363|RIKEN cDNA 1700056E22 gene
mm9_v1_chr2_-_156960826_156961007	0.20866	NKX6-1,2.p2	AK128954|Samhd1|56045|SAM domain and HD domain, 1	AK149865|Samhd1|56045|SAM domain and HD domain, 1	AK151335|Samhd1|56045|SAM domain and HD domain, 1	AK153390|Samhd1|56045|SAM domain and HD domain, 1	AK054490|Samhd1|56045|SAM domain and HD domain, 1	AK170688|Samhd1|56045|SAM domain and HD domain, 1	AK171565|Samhd1|56045|SAM domain and HD domain, 1	BC067198|Samhd1|56045|SAM domain and HD domain, 1	U15635|Samhd1|56045|SAM domain and HD domain, 1	BC012721|Samhd1|56045|SAM domain and HD domain, 1	AK078936|Samhd1|56045|SAM domain and HD domain, 1	NM_001139520|Samhd1|56045|SAM domain and HD domain, 1	NM_018851|Samhd1|56045|SAM domain and HD domain, 1
mm9_v1_chr5_+_31543235_31543349	0.208649	NKX6-1,2.p2	AK077440|Nrbp1|192292|nuclear receptor binding protein 1	AK170501|Nrbp1|192292|nuclear receptor binding protein 1	AF302138|Nrbp1|192292|nuclear receptor binding protein 1	NM_147201|Nrbp1|192292|nuclear receptor binding protein 1	AK046142|Nrbp1|192292|nuclear receptor binding protein 1	BC018463|Nrbp1|192292|nuclear receptor binding protein 1	BC004756|Nrbp1|192292|nuclear receptor binding protein 1	AK191367|Nrbp1|192292|nuclear receptor binding protein 1
mm9_v1_chr6_-_148937854_148937926	0.20727	NKX6-1,2.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr10_+_128143313_128143342	0.205739	NKX6-1,2.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chrM_+_14143_14189	0.204802	NKX6-1,2.p2	
mm9_v1_chr17_+_56752805_56752873	0.203567	NKX6-1,2.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chrX_+_72661966_72662056	0.200235	NKX6-1,2.p2	NM_001166457|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_001166459|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	NM_145956|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	S68022|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK149844|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK028483|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK030736|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC021313|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK038919|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	AK011876|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3	BC048179|Brcc3|210766|BRCA1/BRCA2-containing complex, subunit 3
mm9_v1_chr12_-_36883307_36883421	0.199114	NKX6-1,2.p2	BC058796|Bzw2|66912|basic leucine zipper and W2 domains 2	AB244988|Bzw2|66912|basic leucine zipper and W2 domains 2	BC013060|Bzw2|66912|basic leucine zipper and W2 domains 2	AK088108|Bzw2|66912|basic leucine zipper and W2 domains 2	AK132595|Bzw2|66912|basic leucine zipper and W2 domains 2	AK162647|Bzw2|66912|basic leucine zipper and W2 domains 2	AK011253|Bzw2|66912|basic leucine zipper and W2 domains 2	AK160544|Bzw2|66912|basic leucine zipper and W2 domains 2	AK003229|Bzw2|66912|basic leucine zipper and W2 domains 2	NM_025840|Bzw2|66912|basic leucine zipper and W2 domains 2
mm9_v1_chr13_-_93564652_93564772	0.198928	NKX6-1,2.p2	BC139414|Thbs4|21828|thrombospondin 4	AF102887|Thbs4|21828|thrombospondin 4	NM_011582|Thbs4|21828|thrombospondin 4
mm9_v1_chr9_+_95758015_95758123	0.19787	NKX6-1,2.p2	AK157757|Atr|245000|ataxia telangiectasia and Rad3 related	NM_019864|Atr|245000|ataxia telangiectasia and Rad3 related	AK139834|Atr|245000|ataxia telangiectasia and Rad3 related	AK142244|Atr|245000|ataxia telangiectasia and Rad3 related	AK162661|Atr|245000|ataxia telangiectasia and Rad3 related	AK157754|Atr|245000|ataxia telangiectasia and Rad3 related	AK030118|1700065D16Rik|73410|RIKEN cDNA 1700065D16 gene	AK171072|Atr|245000|ataxia telangiectasia and Rad3 related	AK170039|Atr|245000|ataxia telangiectasia and Rad3 related	AK135538|Atr|245000|ataxia telangiectasia and Rad3 related
mm9_v1_chr5_+_16059312_16059745	0.197555	NKX6-1,2.p2	AK052289|Hgf|15234|hepatocyte growth factor	AK042121|Hgf|15234|hepatocyte growth factor	NM_010427|Hgf|15234|hepatocyte growth factor	AK142159|Hgf|15234|hepatocyte growth factor	BC119228|Hgf|15234|hepatocyte growth factor	BC144764|Hgf|15234|hepatocyte growth factor	AK082461|Hgf|15234|hepatocyte growth factor	X72307|Hgf|15234|hepatocyte growth factor	X84046|Hgf|15234|hepatocyte growth factor	AF042856|Hgf|15234|hepatocyte growth factor	D10212|Hgf|15234|hepatocyte growth factor	D10213|Hgf|15234|hepatocyte growth factor	S71816|Hgf|15234|hepatocyte growth factor
mm9_v1_chr10_+_87323855_87324094	0.197169	NKX6-1,2.p2	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr17_-_57183232_57183299	0.197063	NKX6-1,2.p2	AK198167|Slc25a23|66972|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm9_v1_chr3_+_51299153_51299205	0.195346	NKX6-1,2.p2	
mm9_v1_chr7_-_20147745_20147782	0.194478	NKX6-1,2.p2	AK160935|Lrrc68|232947|leucine rich repeat containing 68	AK050946|Lrrc68|232947|leucine rich repeat containing 68	NM_199149|Lrrc68|232947|leucine rich repeat containing 68
mm9_v1_chr2_-_136717103_136717141	0.194441	NKX6-1,2.p2	BC080765|Mkks|59030|McKusick-Kaufman syndrome protein	BC058174|Mkks|59030|McKusick-Kaufman syndrome protein	NM_001141946|Mkks|59030|McKusick-Kaufman syndrome protein	NM_021527|Mkks|59030|McKusick-Kaufman syndrome protein
mm9_v1_chr1_-_184271729_184271762	0.194325	NKX6-1,2.p2	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chrX_+_132758579_132758588	0.194146	NKX6-1,2.p2	NM_001127169|Tceal7|100040972|transcription elongation factor A (SII)-like 7	AK003800|Tceal7|100040972|transcription elongation factor A (SII)-like 7
mm9_v1_chr13_+_113657736_113657889	0.193632	NKX6-1,2.p2	
mm9_v1_chr11_+_87895626_87895848	0.192983	NKX6-1,2.p2	AK079148|Vezf1|22344|vascular endothelial zinc finger 1	AK018086|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr2_-_38080023_38080025	0.192137	NKX6-1,2.p2	AK033323|8030493G06Rik|320880|RIKEN cDNA 8030493G06 gene
mm9_v1_chr8_-_27056759_27056953	0.189724	NKX6-1,2.p2	BC019450|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK189846|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK020410|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase
mm9_v1_chr17_+_3482314_3482460	0.18918	NKX6-1,2.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr12_+_45412878_45412942	0.188851	NKX6-1,2.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr14_+_27473359_27473404	0.187312	NKX6-1,2.p2	AK206427|Arf4|11843|ADP-ribosylation factor 4	AK210624|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr12_+_101348348_101348406	0.184782	NKX6-1,2.p2	AK161641|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK161723|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK133926|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK088411|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK148906|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	BC003860|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK166783|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK169015|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1
mm9_v1_chr1_+_70772288_70772496	0.184267	NKX6-1,2.p2	BC094541|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	NM_177164|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK083856|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	BC064448|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK080585|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like
mm9_v1_chrX_-_104035877_104035981	0.184012	NKX6-1,2.p2	AK084983|Zcchc5|213436|zinc finger, CCHC domain containing 5	BC064821|Zcchc5|213436|zinc finger, CCHC domain containing 5	NM_199468|Zcchc5|213436|zinc finger, CCHC domain containing 5
mm9_v1_chr11_+_20125239_20125296	0.183962	NKX6-1,2.p2	AK078671|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr9_-_78226334_78226394	0.183958	NKX6-1,2.p2	AB283026|Ooep|67968|oocyte expressed protein homolog (dog)	BC062245|Ooep|67968|oocyte expressed protein homolog (dog)	AK133554|Ooep|67968|oocyte expressed protein homolog (dog)	AK135950|Ooep|67968|oocyte expressed protein homolog (dog)	AK136199|Ooep|67968|oocyte expressed protein homolog (dog)	AK145510|Ooep|67968|oocyte expressed protein homolog (dog)	AK010266|Ooep|67968|oocyte expressed protein homolog (dog)	AK010809|Ooep|67968|oocyte expressed protein homolog (dog)	DQ238107|Ooep|67968|oocyte expressed protein homolog (dog)	NM_026480|Ooep|67968|oocyte expressed protein homolog (dog)
mm9_v1_chr13_+_76718869_76718988	0.182844	NKX6-1,2.p2	AK154322|Mctp1|78771|multiple C2 domains, transmembrane 1	AK144765|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr11_+_85322997_85323115	0.181517	NKX6-1,2.p2	AK192083|Bcas3|192197|breast carcinoma amplified sequence 3
mm9_v1_chr3_-_15332301_15332301	0.17968	NKX6-1,2.p2	DQ055452|Gm9733|751864|predicted gene 9733	NM_001076679|Gm9733|751864|predicted gene 9733
mm9_v1_chr2_+_163484132_163484240	0.179535	NKX6-1,2.p2	AK164716|Pkig|18769|protein kinase inhibitor, gamma	AK168614|Pkig|18769|protein kinase inhibitor, gamma	NM_001164053|Pkig|18769|protein kinase inhibitor, gamma	AK184424|Pkig|18769|protein kinase inhibitor, gamma	AK186035|Pkig|18769|protein kinase inhibitor, gamma	AK186927|Pkig|18769|protein kinase inhibitor, gamma
mm9_v1_chr9_-_15084310_15084404	0.179296	NKX6-1,2.p2	BC020185|Med17|234959|mediator complex subunit 17	NM_144933|Med17|234959|mediator complex subunit 17	AK033151|Med17|234959|mediator complex subunit 17	AK142033|Med17|234959|mediator complex subunit 17	AK038451|Med17|234959|mediator complex subunit 17	AK049112|Med17|234959|mediator complex subunit 17	AK151377|Med17|234959|mediator complex subunit 17
mm9_v1_chr4_-_137923869_137923874	0.177776	NKX6-1,2.p2	BC050114|Cda|72269|cytidine deaminase	NM_028176|Cda|72269|cytidine deaminase	AK008793|Cda|72269|cytidine deaminase
mm9_v1_chr16_-_16869309_16869347	0.177729	NKX6-1,2.p2	BC117051|Vpreb1|22362|pre-B lymphocyte gene 1	BC119175|Vpreb1|22362|pre-B lymphocyte gene 1	BC144850|Vpreb1|22362|pre-B lymphocyte gene 1	AK010843|Vpreb1|22362|pre-B lymphocyte gene 1	AK010879|Vpreb1|22362|pre-B lymphocyte gene 1	X05556|Vpreb1|22362|pre-B lymphocyte gene 1	NM_016982|Vpreb1|22362|pre-B lymphocyte gene 1
mm9_v1_chr10_+_101621712_101621712	0.176932	NKX6-1,2.p2	AK032009|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	NM_001162369|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm9_v1_chr3_+_60432922_60432975	0.176038	NKX6-1,2.p2	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr1_+_137695997_137696087	0.175466	NKX6-1,2.p2	AJ242874|Tnni1|21952|troponin I, skeletal, slow 1	NM_021467|Tnni1|21952|troponin I, skeletal, slow 1	AK012258|Tnni1|21952|troponin I, skeletal, slow 1	NM_001112702|Tnni1|21952|troponin I, skeletal, slow 1
mm9_v1_chr11_-_63892874_63892978	0.175436	NKX6-1,2.p2	AK213695|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC038046|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC018301|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK149999|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK171661|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK010385|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK154668|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK156865|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK172718|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	NM_178379|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)
mm9_v1_chr11_-_17847399_17847495	0.175017	NKX6-1,2.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr10_-_4707228_4707322	0.174732	NKX6-1,2.p2	BC089511|Vip|22353|vasoactive intestinal polypeptide	AK018599|Vip|22353|vasoactive intestinal polypeptide	NM_011702|Vip|22353|vasoactive intestinal polypeptide
mm9_v1_chr13_-_115078961_115078988	0.17236	NKX6-1,2.p2	AK035175|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr9_+_108417075_108417146	0.172355	NKX6-1,2.p2	BC018274|Qars|97541|glutaminyl-tRNA synthetase	AK189247|Qars|97541|glutaminyl-tRNA synthetase
mm9_v1_chr2_-_7317824_7317824	0.171684	NKX6-1,2.p2	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr4_-_6202747_6202782	0.171339	NKX6-1,2.p2	BC130261|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050020|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050220|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050260|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	NM_007824|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050210|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1
mm9_v1_chr6_+_29325052_29325077	0.17104	NKX6-1,2.p2	AF177023|Calu|12321|calumenin
mm9_v1_chr6_-_3349470_3349570	0.171006	NKX6-1,2.p2	BC079894|Samd9l|209086|sterile alpha motif domain containing 9-like	AK052535|Samd9l|209086|sterile alpha motif domain containing 9-like	NM_010156|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr6_-_41264706_41264793	0.168985	NKX6-1,2.p2	AK007843|Try5|103964|trypsin 5	AK131898|Try5|103964|trypsin 5	AK160484|Try5|103964|trypsin 5	AB009661|Try5|103964|trypsin 5	NM_001003405|Try5|103964|trypsin 5	BC139220|Try5|103964|trypsin 5	BC139223|Try5|103964|trypsin 5
mm9_v1_chr10_+_34018323_34018472	0.168411	NKX6-1,2.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chr5_-_110537170_110537204	0.168326	NKX6-1,2.p2	AK159462|Gtpbp6|107999|GTP binding protein 6 (putative)
mm9_v1_chr10_+_87322774_87322795	0.168253	NKX6-1,2.p2	AK038119|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr11_-_106642357_106642481	0.168187	NKX6-1,2.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr12_-_85741801_85741813	0.167919	NKX6-1,2.p2	AK079267|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK002618|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr18_-_67020125_67020125	0.167643	NKX6-1,2.p2	AK136793|Mc4r|17202|melanocortin 4 receptor	NM_016977|Mc4r|17202|melanocortin 4 receptor
mm9_v1_chr1_-_145624156_145624181	0.167388	NKX6-1,2.p2	AK076167|Trove2|20822|TROVE domain family, member 2	NM_013835|Trove2|20822|TROVE domain family, member 2
mm9_v1_chr17_-_45708739_45708860	0.167223	NKX6-1,2.p2	AK177268|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK178129|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK179913|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK180968|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK190429|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK196204|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK218770|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr5_+_111269020_111269035	0.166847	NKX6-1,2.p2	BC056617|Chek2|50883|CHK2 checkpoint homolog (S. pombe)	AK044913|Chek2|50883|CHK2 checkpoint homolog (S. pombe)	NM_016681|Chek2|50883|CHK2 checkpoint homolog (S. pombe)
mm9_v1_chr9_+_92502908_92503003	0.165067	NKX6-1,2.p2	AK218100|Plod2|26432|procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
mm9_v1_chr2_+_152495196_152495240	0.164778	NKX6-1,2.p2	NM_001159551|H13|14950|histocompatibility 13	NM_001159552|H13|14950|histocompatibility 13	NM_001159553|H13|14950|histocompatibility 13	NM_010376|H13|14950|histocompatibility 13	AJ345032|H13|14950|histocompatibility 13	BC056977|H13|14950|histocompatibility 13	DQ168449|H13|14950|histocompatibility 13	AK012600|H13|14950|histocompatibility 13	AK007664|H13|14950|histocompatibility 13	AK004690|H13|14950|histocompatibility 13	AK019877|H13|14950|histocompatibility 13	AK039008|H13|14950|histocompatibility 13	AK049101|H13|14950|histocompatibility 13	AK159176|H13|14950|histocompatibility 13	AK028109|H13|14950|histocompatibility 13	AF483214|H13|14950|histocompatibility 13	AK080966|H13|14950|histocompatibility 13	AK169922|H13|14950|histocompatibility 13
mm9_v1_chr3_+_53267715_53267853	0.164554	NKX6-1,2.p2	AK087909|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK038404|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	NM_173382|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK012908|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK161440|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene
mm9_v1_chr5_+_140895245_140895309	0.164502	NKX6-1,2.p2	AK033722|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK170938|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	NM_133916|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK167618|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK089978|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC031704|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC023767|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC051065|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B
mm9_v1_chr11_-_78510874_78510941	0.164215	NKX6-1,2.p2	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr13_-_23654226_23654256	0.163125	NKX6-1,2.p2	BC127042|Hist1h3e|319151|histone cluster 1, H3e	NM_178205|Hist1h3e|319151|histone cluster 1, H3e
mm9_v1_chr17_-_24615972_24616025	0.162505	NKX6-1,2.p2	AF237676|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK002751|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK083731|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	BC015279|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK048102|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK038515|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK077680|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK088951|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK040100|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	NM_019988|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm9_v1_chr13_-_100972022_100972078	0.162368	NKX6-1,2.p2	AF102871|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF135489|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF135490|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AF381770|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AY147000|Naip2|17948|NLR family, apoptosis inhibitory protein 2	AY147001|Naip2|17948|NLR family, apoptosis inhibitory protein 2	NM_001126182|Naip2|17948|NLR family, apoptosis inhibitory protein 2	NM_010872|Naip2|17948|NLR family, apoptosis inhibitory protein 2
mm9_v1_chr12_-_52849709_52849723	0.162358	NKX6-1,2.p2	AK077185|Hectd1|207304|HECT domain containing 1
mm9_v1_chr4_-_74924159_74924210	0.162143	NKX6-1,2.p2	AK003640|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	BC022621|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	NM_025849|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	AK013937|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene
mm9_v1_chr4_+_150302107_150302108	0.161203	NKX6-1,2.p2	NM_001077509|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9	AK154625|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9
mm9_v1_chr5_+_136108487_136108731	0.161017	NKX6-1,2.p2	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr2_-_69627542_69627605	0.159847	NKX6-1,2.p2	BC125570|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	BC132491|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	BC145015|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	NM_001077684|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	AK015894|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	AK016309|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene	BC099565|4930578N16Rik|75051|RIKEN cDNA 4930578N16 gene
mm9_v1_chr4_-_91042997_91043190	0.159431	NKX6-1,2.p2	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr2_+_109739389_109739489	0.159394	NKX6-1,2.p2	AK078903|Lin7c|22343|lin-7 homolog C (C. elegans)	AK049807|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr1_+_92509306_92509321	0.158838	NKX6-1,2.p2	AK185916|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK207412|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK215258|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK212344|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK218596|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	AK214410|Cops8|108679|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm9_v1_chr3_+_142428186_142428231	0.15869	NKX6-1,2.p2	AK146223|Gtf2b|229906|general transcription factor IIB	AK131856|Gtf2b|229906|general transcription factor IIB	AK133097|Gtf2b|229906|general transcription factor IIB	AK133825|Gtf2b|229906|general transcription factor IIB	AK143935|Gtf2b|229906|general transcription factor IIB	AK145403|Gtf2b|229906|general transcription factor IIB	AK146666|Gtf2b|229906|general transcription factor IIB	AK146910|Gtf2b|229906|general transcription factor IIB	AK151577|Gtf2b|229906|general transcription factor IIB	BC016637|Gtf2b|229906|general transcription factor IIB	NM_145546|Gtf2b|229906|general transcription factor IIB
mm9_v1_chr12_+_74224693_74224793	0.157366	NKX6-1,2.p2	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr3_+_94641626_94641643	0.156781	NKX6-1,2.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr14_+_120830603_120830641	0.155901	NKX6-1,2.p2	AK003316|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr15_+_21041206_21041206	0.155496	NKX6-1,2.p2	BC086655|Cdh12|215654|cadherin 12	NM_001008420|Cdh12|215654|cadherin 12
mm9_v1_chr5_-_87355527_87355556	0.155019	NKX6-1,2.p2	BC027200|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	NM_152811|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK004971|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK050435|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1
mm9_v1_chr3_-_146432922_146432972	0.15327	NKX6-1,2.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr1_-_24012436_24012480	0.152681	NKX6-1,2.p2	AK003789|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	BC028981|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK004301|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK007909|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK015824|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	NM_026503|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene
mm9_v1_chr7_-_38804503_38804582	0.152363	NKX6-1,2.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr2_+_87366184_87366358	0.151584	NKX6-1,2.p2	BC090254|Srp9|27058|signal recognition particle 9
mm9_v1_chr7_-_15031917_15031936	0.151346	NKX6-1,2.p2	EU486167|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK041070|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	NM_175250|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	EU486166|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr1_-_187941133_187941207	0.150558	NKX6-1,2.p2	AK148533|Lyplal1|226791|lysophospholipase-like 1	BC027340|Lyplal1|226791|lysophospholipase-like 1	NM_146106|Lyplal1|226791|lysophospholipase-like 1
mm9_v1_chr1_-_58026858_58026927	0.149754	NKX6-1,2.p2	AK032658|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK132699|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK053098|Kctd18|51960|potassium channel tetramerisation domain containing 18	AK079700|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159864|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_001159865|Kctd18|51960|potassium channel tetramerisation domain containing 18	NM_030211|Kctd18|51960|potassium channel tetramerisation domain containing 18
mm9_v1_chr9_-_95390211_95390302	0.149176	NKX6-1,2.p2	AK179363|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene
mm9_v1_chr2_-_155984800_155984951	0.14778	NKX6-1,2.p2	AK134091|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr11_+_22902273_22902372	0.146791	NKX6-1,2.p2	
mm9_v1_chr4_-_116312481_116312553	0.145756	NKX6-1,2.p2	AK181349|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr16_-_62846777_62846879	0.145736	NKX6-1,2.p2	AK016794|Arl13b|68146|ADP-ribosylation factor-like 13B	AK020859|Arl13b|68146|ADP-ribosylation factor-like 13B	AK051159|Arl13b|68146|ADP-ribosylation factor-like 13B	AK021270|Arl13b|68146|ADP-ribosylation factor-like 13B	NM_026577|Arl13b|68146|ADP-ribosylation factor-like 13B
mm9_v1_chr11_+_57985140_57985189	0.145732	NKX6-1,2.p2	NM_175001|Mrpl22|216767|mitochondrial ribosomal protein L22	AK077615|Mrpl22|216767|mitochondrial ribosomal protein L22	BC061191|Mrpl22|216767|mitochondrial ribosomal protein L22	AK086913|Mrpl22|216767|mitochondrial ribosomal protein L22	AK164417|Mrpl22|216767|mitochondrial ribosomal protein L22
mm9_v1_chr2_-_118375365_118375421	0.145488	NKX6-1,2.p2	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr9_-_21038160_21038293	0.145163	NKX6-1,2.p2	
mm9_v1_chr10_-_90616085_90616118	0.144889	NKX6-1,2.p2	AK186132|Tmpo|21917|thymopoietin	AK199505|Tmpo|21917|thymopoietin
mm9_v1_chr5_+_136592559_136592606	0.144637	NKX6-1,2.p2	AK158610|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	NM_011293|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	AK158644|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	BC042939|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	D85818|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J
mm9_v1_chr8_+_73053432_73053453	0.14455	NKX6-1,2.p2	AB154247|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr3_-_92289795_92289819	0.144469	NKX6-1,2.p2	X91824|Sprr1a|20753|small proline-rich protein 1A	BC027534|Sprr1a|20753|small proline-rich protein 1A	NM_009264|Sprr1a|20753|small proline-rich protein 1A	AK144782|Sprr1a|20753|small proline-rich protein 1A
mm9_v1_chr6_+_18816317_18816373	0.143678	NKX6-1,2.p2	BC049731|Ankrd7|75196|ankyrin repeat domain 7	NM_001167757|Ankrd7|75196|ankyrin repeat domain 7	NM_029202|Ankrd7|75196|ankyrin repeat domain 7	AK077080|Ankrd7|75196|ankyrin repeat domain 7	AK015948|Ankrd7|75196|ankyrin repeat domain 7
mm9_v1_chr1_+_74438139_74438172	0.143113	NKX6-1,2.p2	AY028804|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr2_+_119456102_119456195	0.142073	NKX6-1,2.p2	BC009096|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chrX_-_96665980_96666083	0.141714	NKX6-1,2.p2	AK005373|Pja1|18744|praja1, RING-H2 motif containing	BC037616|Pja1|18744|praja1, RING-H2 motif containing	AK181060|Pja1|18744|praja1, RING-H2 motif containing	AK181628|Pja1|18744|praja1, RING-H2 motif containing	AK188149|Pja1|18744|praja1, RING-H2 motif containing	BC025975|Pja1|18744|praja1, RING-H2 motif containing	AK145943|Pja1|18744|praja1, RING-H2 motif containing	AF335250|Pja1|18744|praja1, RING-H2 motif containing	AF335251|Pja1|18744|praja1, RING-H2 motif containing	AF335252|Pja1|18744|praja1, RING-H2 motif containing	AK135382|Pja1|18744|praja1, RING-H2 motif containing	NM_001083110|Pja1|18744|praja1, RING-H2 motif containing	NM_008853|Pja1|18744|praja1, RING-H2 motif containing
mm9_v1_chr2_-_136716832_136716934	0.141277	NKX6-1,2.p2	AK008160|Mkks|59030|McKusick-Kaufman syndrome protein	AK008406|Mkks|59030|McKusick-Kaufman syndrome protein	BC024359|Mkks|59030|McKusick-Kaufman syndrome protein	AK004987|Mkks|59030|McKusick-Kaufman syndrome protein	BC100336|Mkks|59030|McKusick-Kaufman syndrome protein	AK032528|Mkks|59030|McKusick-Kaufman syndrome protein	AK032554|Mkks|59030|McKusick-Kaufman syndrome protein	AF254074|Mkks|59030|McKusick-Kaufman syndrome protein
mm9_v1_chr10_+_79606611_79606693	0.139998	NKX6-1,2.p2	AK186963|Atp5d|66043|ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
mm9_v1_chr1_-_134539434_134539434	0.139028	NKX6-1,2.p2	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr13_-_67433435_67433495	0.138999	NKX6-1,2.p2	BC141018|Zfp595|218314|zinc finger protein 595	AK134150|Zfp595|218314|zinc finger protein 595	AK154058|Zfp595|218314|zinc finger protein 595	AK136304|Zfp595|218314|zinc finger protein 595	AK038563|Zfp595|218314|zinc finger protein 595	NM_177622|Zfp595|218314|zinc finger protein 595
mm9_v1_chr1_-_90102270_90102322	0.138737	NKX6-1,2.p2	AK005690|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	AK005688|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	BC048490|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	NM_008299|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3	U95607|Dnajb3|15504|DnaJ (Hsp40) homolog, subfamily B, member 3
mm9_v1_chr10_-_116494883_116494953	0.138717	NKX6-1,2.p2	AK205966|Cct2|12461|chaperonin containing Tcp1, subunit 2 (beta)
mm9_v1_chr9_-_26815760_26815835	0.138479	NKX6-1,2.p2	AK210283|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr6_-_87793898_87794088	0.138051	NKX6-1,2.p2	AK207643|Cnbp|12785|cellular nucleic acid binding protein	AK188144|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr8_+_125914690_125914738	0.137455	NKX6-1,2.p2	AK177952|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK179328|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK186829|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr5_-_121822213_121822316	0.137298	NKX6-1,2.p2	AK211451|Trafd1|231712|TRAF type zinc finger domain containing 1	AK212088|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr6_-_113465872_113465930	0.137176	NKX6-1,2.p2	
mm9_v1_chr7_-_134351860_134352145	0.136472	NKX6-1,2.p2	AK047320|Tbc1d10b|68449|TBC1 domain family, member 10b	AK047327|Tbc1d10b|68449|TBC1 domain family, member 10b	NM_144522|Tbc1d10b|68449|TBC1 domain family, member 10b
mm9_v1_chr11_-_116332384_116332670	0.136437	NKX6-1,2.p2	AK217597|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1	AK217106|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1	AK193081|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1	AK182083|Prpsap1|67763|phosphoribosyl pyrophosphate synthetase-associated protein 1
mm9_v1_chrX_+_137909951_137910122	0.136237	NKX6-1,2.p2	AK133179|Col4a5|12830|collagen, type IV, alpha 5	NM_001163155|Col4a5|12830|collagen, type IV, alpha 5	NM_007736|Col4a5|12830|collagen, type IV, alpha 5	AB041350|Col4a5|12830|collagen, type IV, alpha 5	BC082788|Col4a5|12830|collagen, type IV, alpha 5
mm9_v1_chr1_-_180259089_180259120	0.13556	NKX6-1,2.p2	AK049600|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr8_+_97381349_97381467	0.135347	NKX6-1,2.p2	NM_009090|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	BC099548|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK160053|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK137796|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK146763|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK151270|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	D83999|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	BC002023|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C
mm9_v1_chr8_-_8667108_8667134	0.135289	NKX6-1,2.p2	AK034581|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr4_-_153532466_153532665	0.134388	NKX6-1,2.p2	AK182064|Tprgl|67808|transformation related protein 63 regulated like
mm9_v1_chr4_+_98697606_98697678	0.134347	NKX6-1,2.p2	AK149450|Angptl3|30924|angiopoietin-like 3	NM_013913|Angptl3|30924|angiopoietin-like 3	AK149555|Angptl3|30924|angiopoietin-like 3	BC019491|Angptl3|30924|angiopoietin-like 3	AF162224|Angptl3|30924|angiopoietin-like 3
mm9_v1_chr2_-_35972131_35972337	0.134258	NKX6-1,2.p2	AK220096|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chrX_-_20639111_20639168	0.133864	NKX6-1,2.p2	AK155039|Zfp182|319535|zinc finger protein 182	BC063066|Zfp182|319535|zinc finger protein 182	AK045698|Zfp182|319535|zinc finger protein 182	NM_001013387|Zfp182|319535|zinc finger protein 182	NM_001111076|Zfp182|319535|zinc finger protein 182	AK043973|Zfp182|319535|zinc finger protein 182
mm9_v1_chr9_-_15105965_15105999	0.133465	NKX6-1,2.p2	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr6_-_56654667_56654692	0.132904	NKX6-1,2.p2	BC048459|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK008480|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK011218|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC061085|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK009617|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132626|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132628|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_025520|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chrX_+_100688896_100688955	0.131046	NKX6-1,2.p2	AK148110|Enox|70252|expressed neighbor of Xist	AK137473|Enox|70252|expressed neighbor of Xist	AK007997|Enox|70252|expressed neighbor of Xist
mm9_v1_chr7_+_86040793_86040943	0.130702	NKX6-1,2.p2	AK031972|Aen|68048|apoptosis enhancing nuclease	NM_001162939|Aen|68048|apoptosis enhancing nuclease	NM_026531|Aen|68048|apoptosis enhancing nuclease	AK165708|Aen|68048|apoptosis enhancing nuclease	AK012555|Aen|68048|apoptosis enhancing nuclease	AK090056|Aen|68048|apoptosis enhancing nuclease	AK166806|Aen|68048|apoptosis enhancing nuclease	AK167042|Aen|68048|apoptosis enhancing nuclease	AK076421|Aen|68048|apoptosis enhancing nuclease	AK167658|Aen|68048|apoptosis enhancing nuclease	AK017644|Aen|68048|apoptosis enhancing nuclease	AK089090|Aen|68048|apoptosis enhancing nuclease	BC022614|Aen|68048|apoptosis enhancing nuclease
mm9_v1_chr1_-_180264067_180264092	0.130319	NKX6-1,2.p2	AK190289|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr6_-_136765642_136765708	0.129687	NKX6-1,2.p2	BC104145|Wbp11|60321|WW domain binding protein 11
mm9_v1_chr19_+_9026020_9026327	0.129225	NKX6-1,2.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr14_-_103482076_103482219	0.129192	NKX6-1,2.p2	AK083561|Fbxl3|50789|F-box and leucine-rich repeat protein 3
mm9_v1_chr3_-_86803173_86803261	0.129142	NKX6-1,2.p2	FJ594117|Cd1d1|12479|CD1d1 antigen	AK002582|Cd1d1|12479|CD1d1 antigen	BC055902|Cd1d1|12479|CD1d1 antigen	M63695|Cd1d1|12479|CD1d1 antigen	NM_007639|Cd1d1|12479|CD1d1 antigen
mm9_v1_chr12_+_80398268_80398337	0.129043	NKX6-1,2.p2	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chr9_-_85637765_85637765	0.126967	NKX6-1,2.p2	NM_001081282|Ibtk|108837|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm9_v1_chr11_+_62692956_62692968	0.126956	NKX6-1,2.p2	AK050027|Fam18b|67510|family with sequence similarity 18, member B
mm9_v1_chr13_-_67601323_67601457	0.125082	NKX6-1,2.p2	BC139150|Zfp58|238693|zinc finger protein 58	BC139151|Zfp58|238693|zinc finger protein 58	AK041250|Zfp58|238693|zinc finger protein 58	AK162259|Zfp58|238693|zinc finger protein 58	AK167399|Zfp58|238693|zinc finger protein 58	NM_001007575|Zfp58|238693|zinc finger protein 58
mm9_v1_chr13_+_67964262_67964324	0.124668	NKX6-1,2.p2	AK133011|BC048507|408058|cDNA sequence BC048507	BC048507|BC048507|408058|cDNA sequence BC048507	NM_001001185|BC048507|408058|cDNA sequence BC048507
mm9_v1_chr3_+_102975621_102975695	0.124623	NKX6-1,2.p2	NM_026602|Bcas2|68183|breast carcinoma amplified sequence 2	BC013627|Bcas2|68183|breast carcinoma amplified sequence 2	BC037062|Bcas2|68183|breast carcinoma amplified sequence 2	AK018786|Bcas2|68183|breast carcinoma amplified sequence 2	AK005825|Bcas2|68183|breast carcinoma amplified sequence 2	AK020098|Bcas2|68183|breast carcinoma amplified sequence 2	AK153513|Bcas2|68183|breast carcinoma amplified sequence 2	AK166967|Bcas2|68183|breast carcinoma amplified sequence 2	AY043239|Bcas2|68183|breast carcinoma amplified sequence 2	BC023382|Bcas2|68183|breast carcinoma amplified sequence 2
mm9_v1_chr3_+_130320365_130320530	0.124572	NKX6-1,2.p2	AK049937|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	NM_001163587|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	AK030395|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	AK005060|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	NM_027907|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC043680|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC022644|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1	BC058592|Agxt2l1|71760|alanine-glyoxylate aminotransferase 2-like 1
mm9_v1_chr8_+_116941901_116941985	0.124058	NKX6-1,2.p2	BC147139|Clec3a|403395|C-type lectin domain family 3, member a	BC147140|Clec3a|403395|C-type lectin domain family 3, member a	NM_001007223|Clec3a|403395|C-type lectin domain family 3, member a
mm9_v1_chr10_-_24555898_24556005	0.123414	NKX6-1,2.p2	AY630402|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	BC117533|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	BC118512|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	BC006944|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	NM_134005|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	AK132256|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3
mm9_v1_chr8_+_71626352_71626466	0.122512	NKX6-1,2.p2	AK187885|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK196120|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205248|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207339|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207413|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209086|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK210829|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr1_+_174051459_174051484	0.122289	NKX6-1,2.p2	AK189379|Copa|12847|coatomer protein complex subunit alpha	AK191029|Copa|12847|coatomer protein complex subunit alpha	AK193412|Copa|12847|coatomer protein complex subunit alpha	AK199738|Copa|12847|coatomer protein complex subunit alpha	AK194620|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr9_+_119354040_119354104	0.121657	NKX6-1,2.p2	NM_001172136|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	NM_172456|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK148426|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK028887|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK051300|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK162566|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK163555|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC119024|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC144729|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	AK034654|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC094589|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC052171|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC059920|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like	BC064730|Exog|208194|endo/exonuclease (5'-3'), endonuclease G-like
mm9_v1_chr14_+_30806158_30806226	0.121345	NKX6-1,2.p2	AK179069|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)
mm9_v1_chr15_-_72929166_72929248	0.121281	NKX6-1,2.p2	AK148725|2310051F07Rik|108745|RIKEN cDNA 2310051F07 gene
mm9_v1_chr17_+_39979957_39979965	0.120704	NKX6-1,2.p2	
mm9_v1_chr4_+_154932761_154932805	0.120688	NKX6-1,2.p2	AK194739|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK203879|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK205062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr4_-_120624286_120624305	0.12062	NKX6-1,2.p2	NM_001005788|Zfp69|381549|zinc finger protein 69
mm9_v1_chr9_-_64101429_64101455	0.120146	NKX6-1,2.p2	AK154793|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr1_+_174051888_174051985	0.119841	NKX6-1,2.p2	
mm9_v1_chr2_-_163450863_163450871	0.119275	NKX6-1,2.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr4_-_126540249_126540348	0.1172	NKX6-1,2.p2	AK018207|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr11_+_23156482_23156531	0.11701	NKX6-1,2.p2	BC034710|Xpo1|103573|exportin 1, CRM1 homolog (yeast)
mm9_v1_chr10_+_20059547_20059574	0.116928	NKX6-1,2.p2	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr13_-_38615229_38615324	0.116314	NKX6-1,2.p2	BC036155|Txndc5|105245|thioredoxin domain containing 5	AK224911|Txndc5|105245|thioredoxin domain containing 5
mm9_v1_chr9_-_105372402_105372478	0.115627	NKX6-1,2.p2	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr4_-_86873866_86873867	0.115034	NKX6-1,2.p2	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr2_+_59192308_59192366	0.114057	NKX6-1,2.p2	AK021168|Pkp4|227937|plakophilin 4
mm9_v1_chr8_+_87213209_87213224	0.114009	NKX6-1,2.p2	AK032945|Trmt1|212528|TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae)
mm9_v1_chr11_+_79845841_79845980	0.113049	NKX6-1,2.p2	AK076010|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr19_+_46227016_46227019	0.112472	NKX6-1,2.p2	AK041959|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr11_-_94154354_94154488	0.112125	NKX6-1,2.p2	BC055921|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr8_+_112465553_112465555	0.112053	NKX6-1,2.p2	AK146878|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2
mm9_v1_chr10_-_126626878_126627109	0.112032	NKX6-1,2.p2	AK158684|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_001166413|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AF487515|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AK010452|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	BC041113|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_028027|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25
mm9_v1_chr2_+_69588414_69588564	0.111759	NKX6-1,2.p2	AK079931|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK045812|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr13_-_4522566_4522580	0.111655	NKX6-1,2.p2	AB097220|Akr1c20|116852|aldo-keto reductase family 1, member C20	BC021607|Akr1c20|116852|aldo-keto reductase family 1, member C20	AK012162|Akr1c20|116852|aldo-keto reductase family 1, member C20	NM_054080|Akr1c20|116852|aldo-keto reductase family 1, member C20
mm9_v1_chr15_-_77591830_77592015	0.110553	NKX6-1,2.p2	M88754|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK087164|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC026521|Myh9|17886|myosin, heavy polypeptide 9, non-muscle
mm9_v1_chr17_+_24546733_24546845	0.11015	NKX6-1,2.p2	BC038271|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chr6_+_4490515_4490528	0.110016	NKX6-1,2.p2	AK003150|Col1a2|12843|collagen, type I, alpha 2	BC023203|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr2_+_37056762_37056762	0.109789	NKX6-1,2.p2	NM_146662|Olfr365|258656|olfactory receptor 365
mm9_v1_chr12_+_73885063_73885417	0.109603	NKX6-1,2.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr17_+_35259896_35259930	0.109573	NKX6-1,2.p2	BC120637|Gpank1|81845|G patch domain and ankyrin repeats 1	BC120639|Gpank1|81845|G patch domain and ankyrin repeats 1	NM_032460|Gpank1|81845|G patch domain and ankyrin repeats 1	AB221568|Gpank1|81845|G patch domain and ankyrin repeats 1
mm9_v1_chr19_-_5468482_5468500	0.109549	NKX6-1,2.p2	AF014941|Ctsw|13041|cathepsin W	BC019136|Ctsw|13041|cathepsin W	AK088375|Ctsw|13041|cathepsin W	NM_009985|Ctsw|13041|cathepsin W	AK163626|Ctsw|13041|cathepsin W
mm9_v1_chrX_+_90900201_90900217	0.109394	NKX6-1,2.p2	AK149304|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189950|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	NM_177546|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK053577|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr9_+_91263809_91263809	0.108622	NKX6-1,2.p2	AK046913|Zic4|22774|zinc finger protein of the cerebellum 4	NM_009576|Zic4|22774|zinc finger protein of the cerebellum 4
mm9_v1_chr1_-_140071818_140071883	0.108576	NKX6-1,2.p2	BC131655|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK088215|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	BC028512|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	M14342|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK154893|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK171802|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK054056|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_001111316|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_011210|Ptprc|19264|protein tyrosine phosphatase, receptor type, C
mm9_v1_chr9_-_119066057_119066210	0.108298	NKX6-1,2.p2	AK160568|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	BC019882|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	AK145953|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	AY273812|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B	NM_146230|Acaa1b|235674|acetyl-Coenzyme A acyltransferase 1B
mm9_v1_chr14_+_37881214_37881259	0.108205	NKX6-1,2.p2	BC037728|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044611|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044383|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	NM_173418|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	BC057628|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
mm9_v1_chr18_+_9707574_9707671	0.107824	NKX6-1,2.p2	AK158366|Colec12|140792|collectin sub-family member 12	AK042772|Colec12|140792|collectin sub-family member 12	NM_130449|Colec12|140792|collectin sub-family member 12	BC009162|Colec12|140792|collectin sub-family member 12	BC057936|Colec12|140792|collectin sub-family member 12	AB078434|Colec12|140792|collectin sub-family member 12	AK141928|Colec12|140792|collectin sub-family member 12	BC060657|Colec12|140792|collectin sub-family member 12
mm9_v1_chr6_-_34126949_34127110	0.107602	NKX6-1,2.p2	AK042150|Slc35b4|58246|solute carrier family 35, member B4	AK029046|Slc35b4|58246|solute carrier family 35, member B4	BC033512|Slc35b4|58246|solute carrier family 35, member B4	AK033913|Slc35b4|58246|solute carrier family 35, member B4	BC016275|Slc35b4|58246|solute carrier family 35, member B4	AK045791|Slc35b4|58246|solute carrier family 35, member B4	AK138591|Slc35b4|58246|solute carrier family 35, member B4	AB041549|Slc35b4|58246|solute carrier family 35, member B4	NM_021435|Slc35b4|58246|solute carrier family 35, member B4	AK029969|Slc35b4|58246|solute carrier family 35, member B4
mm9_v1_chr8_-_72149357_72149431	0.106534	NKX6-1,2.p2	AK083009|Zfp868|234362|zinc finger protein 868
mm9_v1_chr3_-_107135939_107136206	0.106382	NKX6-1,2.p2	BC080828|Rbm15|229700|RNA binding motif protein 15	AK048987|Rbm15|229700|RNA binding motif protein 15	BC051409|Rbm15|229700|RNA binding motif protein 15	AK168242|Rbm15|229700|RNA binding motif protein 15	AK166271|Rbm15|229700|RNA binding motif protein 15	BC057038|Rbm15|229700|RNA binding motif protein 15	AK220162|Rbm15|229700|RNA binding motif protein 15	AK168936|Rbm15|229700|RNA binding motif protein 15	BC120590|Rbm15|229700|RNA binding motif protein 15	BC137741|Rbm15|229700|RNA binding motif protein 15	NM_001045807|Rbm15|229700|RNA binding motif protein 15
mm9_v1_chr1_+_87804881_87804999	0.106361	NKX6-1,2.p2	AK195066|Itm2c|64294|integral membrane protein 2C	AK181068|Itm2c|64294|integral membrane protein 2C	AK184077|Itm2c|64294|integral membrane protein 2C	AK184543|Itm2c|64294|integral membrane protein 2C	AK184789|Itm2c|64294|integral membrane protein 2C	AK185815|Itm2c|64294|integral membrane protein 2C	AK187837|Itm2c|64294|integral membrane protein 2C	AK202316|Itm2c|64294|integral membrane protein 2C	AK208625|Itm2c|64294|integral membrane protein 2C	AK210908|Itm2c|64294|integral membrane protein 2C	AK214441|Itm2c|64294|integral membrane protein 2C	AK214627|Itm2c|64294|integral membrane protein 2C	AK188840|Itm2c|64294|integral membrane protein 2C	AK215527|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr15_+_9001154_9001214	0.106158	NKX6-1,2.p2	BC115776|1110020G09Rik|68646|RIKEN cDNA 1110020G09 gene
mm9_v1_chr2_-_34916915_34916960	0.10591	NKX6-1,2.p2	M35525|Hc|15139|hemolytic complement	M35526|Hc|15139|hemolytic complement	AK080166|Hc|15139|hemolytic complement	NM_010406|Hc|15139|hemolytic complement
mm9_v1_chr2_-_44972914_44972969	0.105674	NKX6-1,2.p2	AJ535778|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr3_+_63780020_63780051	0.105559	NKX6-1,2.p2	AK146654|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr5_+_53174293_53174344	0.104971	NKX6-1,2.p2	AK138997|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK049511|Zcchc4|78796|zinc finger, CCHC domain containing 4	NM_030185|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK019621|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK143805|Zcchc4|78796|zinc finger, CCHC domain containing 4
mm9_v1_chr15_+_102236573_102236691	0.103292	NKX6-1,2.p2	
mm9_v1_chr15_+_31154178_31154275	0.103054	NKX6-1,2.p2	BC024876|Dap|223453|death-associated protein	BC010828|Dap|223453|death-associated protein	AK169162|Dap|223453|death-associated protein	BC057669|Dap|223453|death-associated protein	AK167579|Dap|223453|death-associated protein	AK014991|Dap|223453|death-associated protein	AK167688|Dap|223453|death-associated protein
mm9_v1_chr3_+_94926272_94926508	0.102725	NKX6-1,2.p2	
mm9_v1_chrX_+_34414293_34414386	0.102366	NKX6-1,2.p2	AK163966|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AF089812|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AF383148|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK133723|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK160538|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK164074|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK160545|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	NM_019668|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK160527|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	BC026053|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK150417|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK153327|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)
mm9_v1_chr1_-_65119965_65120107	0.101928	NKX6-1,2.p2	M64544|Crygc|12966|crystallin, gamma C	NM_007775|Crygc|12966|crystallin, gamma C	BC056454|Crygc|12966|crystallin, gamma C	EF426301|Crygc|12966|crystallin, gamma C	EF426302|Crygc|12966|crystallin, gamma C	NM_001082573|Crygc|12966|crystallin, gamma C
mm9_v1_chr15_+_81742665_81742704	0.101746	NKX6-1,2.p2	AK182718|Aco2|11429|aconitase 2, mitochondrial	AK220091|Aco2|11429|aconitase 2, mitochondrial
mm9_v1_chr7_-_20118330_20118330	0.101423	NKX6-1,2.p2	BC024868|Lrrc68|232947|leucine rich repeat containing 68
mm9_v1_chr16_+_23058322_23058435	0.100566	NKX6-1,2.p2	NM_001102411|Kng1|16644|kininogen 1	NM_001102412|Kng1|16644|kininogen 1	NM_023125|Kng1|16644|kininogen 1	AK005547|Kng1|16644|kininogen 1	BC108936|Kng1|16644|kininogen 1	BC018158|Kng1|16644|kininogen 1
mm9_v1_chr8_-_23016871_23016903	0.100086	NKX6-1,2.p2	BC099849|Defb11|246081|defensin beta 11	AJ437646|Defb11|246081|defensin beta 11	NM_139221|Defb11|246081|defensin beta 11
mm9_v1_chr19_+_46227029_46227030	0.0992186	NKX6-1,2.p2	AK039570|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr11_-_82804594_82804643	0.09894	NKX6-1,2.p2	AK050355|Slfn9|237886|schlafen 9
mm9_v1_chr11_+_97564712_97564785	0.0986764	NKX6-1,2.p2	AK153162|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK002331|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	NM_011971|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK050108|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK080755|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AK010488|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	BC014783|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3	AF060092|Psmb3|26446|proteasome (prosome, macropain) subunit, beta type 3
mm9_v1_chr18_-_39572137_39572180	0.0985337	NKX6-1,2.p2	AK171439|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK163857|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr4_-_11003327_11003375	0.0981921	NKX6-1,2.p2	AK009547|2310030N02Rik|76947|RIKEN cDNA 2310030N02 gene	AK041507|2310030N02Rik|76947|RIKEN cDNA 2310030N02 gene	NM_001085493|2310030N02Rik|76947|RIKEN cDNA 2310030N02 gene
mm9_v1_chr7_-_11242322_11242322	0.0974771	NKX6-1,2.p2	NM_001110020|Gm6900|628596|predicted gene 6900
mm9_v1_chr13_+_55827167_55827225	0.0968348	NKX6-1,2.p2	AK209800|Txndc15|69672|thioredoxin domain containing 15	AK213704|Txndc15|69672|thioredoxin domain containing 15	AK206830|Txndc15|69672|thioredoxin domain containing 15
mm9_v1_chr2_+_142904128_142904227	0.0960974	NKX6-1,2.p2	BC139152|Otor|57329|otoraplin	BC139153|Otor|57329|otoraplin	AK047965|Otor|57329|otoraplin	AJ243939|Otor|57329|otoraplin	AF243504|Otor|57329|otoraplin	NM_020595|Otor|57329|otoraplin
mm9_v1_chr13_+_97408920_97408964	0.0958601	NKX6-1,2.p2	AK020301|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm9_v1_chr13_-_108516475_108516490	0.0951251	NKX6-1,2.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr1_+_159436875_159436945	0.0950053	NKX6-1,2.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr11_+_98724908_98724950	0.094363	NKX6-1,2.p2	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr13_-_60278447_60278547	0.094273	NKX6-1,2.p2	BC055747|Gas1|14451|growth arrest specific 1
mm9_v1_chr15_+_76157816_76157892	0.0942075	NKX6-1,2.p2	AK089890|Exosc4|109075|exosome component 4	NM_175399|Exosc4|109075|exosome component 4	AK167629|Exosc4|109075|exosome component 4	AK083308|Exosc4|109075|exosome component 4	BC012277|Exosc4|109075|exosome component 4
mm9_v1_chr3_+_102847115_102847128	0.0937666	NKX6-1,2.p2	BC029058|Csde1|229663|cold shock domain containing E1, RNA binding
mm9_v1_chr14_-_118450875_118451546	0.0932569	NKX6-1,2.p2	EU554632|Dct|13190|dopachrome tautomerase	AK214181|Dct|13190|dopachrome tautomerase	AK214448|Dct|13190|dopachrome tautomerase	AK217087|Dct|13190|dopachrome tautomerase	AK212164|Dct|13190|dopachrome tautomerase	AK219002|Dct|13190|dopachrome tautomerase	BC082330|Dct|13190|dopachrome tautomerase	AK209892|Dct|13190|dopachrome tautomerase	AK191654|Dct|13190|dopachrome tautomerase	BC067064|Dct|13190|dopachrome tautomerase	X63349|Dct|13190|dopachrome tautomerase	AK033040|Dct|13190|dopachrome tautomerase	NM_010024|Dct|13190|dopachrome tautomerase	AK202452|Dct|13190|dopachrome tautomerase
mm9_v1_chr14_+_120724380_120724561	0.0929586	NKX6-1,2.p2	BC020406|Mbnl2|105559|muscleblind-like 2	BC026711|Mbnl2|105559|muscleblind-like 2	GQ906534|Mbnl2|105559|muscleblind-like 2	AK216404|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr19_-_44266763_44266931	0.092603	NKX6-1,2.p2	AB290927|Pkd2l1|329064|polycystic kidney disease 2-like 1	BC116297|Pkd2l1|329064|polycystic kidney disease 2-like 1	BC116323|Pkd2l1|329064|polycystic kidney disease 2-like 1	AF271381|Pkd2l1|329064|polycystic kidney disease 2-like 1	AK046772|Pkd2l1|329064|polycystic kidney disease 2-like 1	NM_181422|Pkd2l1|329064|polycystic kidney disease 2-like 1
mm9_v1_chrX_-_46641408_46641425	0.092525	NKX6-1,2.p2	AK028343|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK034058|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK041822|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	NM_145951|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2
mm9_v1_chr7_+_148127289_148127427	0.091563	NKX6-1,2.p2	AK171694|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)
mm9_v1_chr2_-_87475901_87475901	0.0909692	NKX6-1,2.p2	NM_146836|Olfr1132|258833|olfactory receptor 1132
mm9_v1_chr12_+_75028976_75029036	0.090429	NKX6-1,2.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr8_-_22995888_22995905	0.090336	NKX6-1,2.p2	BC109177|Defb9|246079|defensin beta 9	AJ437647|Defb9|246079|defensin beta 9	NM_139219|Defb9|246079|defensin beta 9
mm9_v1_chr3_-_88214554_88214644	0.0879407	NKX6-1,2.p2	
mm9_v1_chr11_-_86900220_86900252	0.0877807	NKX6-1,2.p2	AK031106|1200011M11Rik|74133|RIKEN cDNA 1200011M11 gene
mm9_v1_chr19_-_40525876_40525887	0.0872707	NKX6-1,2.p2	AF078666|Sorbs1|20411|sorbin and SH3 domain containing 1	AF078667|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034962|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034963|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr4_+_132686585_132686596	0.0867763	NKX6-1,2.p2	AK183500|Wasf2|242687|WAS protein family, member 2
mm9_v1_chr18_-_46471470_46471581	0.0866877	NKX6-1,2.p2	NM_001160399|Ccdc112|240261|coiled-coil domain containing 112
mm9_v1_chr19_+_54003803_54003809	0.0858087	NKX6-1,2.p2	AK050175|Pdcd4|18569|programmed cell death 4
mm9_v1_chr5_-_147395979_147395979	0.0852299	NKX6-1,2.p2	BC055746|Gpr12|14738|G-protein coupled receptor 12	NM_008151|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr17_+_86577946_86578063	0.0835411	NKX6-1,2.p2	
mm9_v1_chr16_-_33967064_33967149	0.0832012	NKX6-1,2.p2	BC003887|Umps|22247|uridine monophosphate synthetase	BC095981|Umps|22247|uridine monophosphate synthetase	AK159808|Umps|22247|uridine monophosphate synthetase	AK159955|Umps|22247|uridine monophosphate synthetase	AK035821|Umps|22247|uridine monophosphate synthetase	AK035997|Umps|22247|uridine monophosphate synthetase	AK090102|Umps|22247|uridine monophosphate synthetase	AK135187|Umps|22247|uridine monophosphate synthetase	NM_009471|Umps|22247|uridine monophosphate synthetase
mm9_v1_chr8_+_109674517_109674597	0.0831411	NKX6-1,2.p2	BC054749|Cyb5b|66427|cytochrome b5 type B	BC062980|Cyb5b|66427|cytochrome b5 type B	AK003333|Cyb5b|66427|cytochrome b5 type B	AK088970|Cyb5b|66427|cytochrome b5 type B	AK165543|Cyb5b|66427|cytochrome b5 type B	AK052810|Cyb5b|66427|cytochrome b5 type B	NM_025558|Cyb5b|66427|cytochrome b5 type B	AK019263|Cyb5b|66427|cytochrome b5 type B	BC048147|Cyb5b|66427|cytochrome b5 type B	AK003815|Cyb5b|66427|cytochrome b5 type B	AK168422|Cyb5b|66427|cytochrome b5 type B	AK166544|Cyb5b|66427|cytochrome b5 type B	BC046810|Cyb5b|66427|cytochrome b5 type B	BC046479|Cyb5b|66427|cytochrome b5 type B	BC058812|Cyb5b|66427|cytochrome b5 type B
mm9_v1_chr9_-_36540210_36540345	0.0830322	NKX6-1,2.p2	AK017358|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr7_+_117161821_117161836	0.0824945	NKX6-1,2.p2	AK079903|Ipo7|233726|importin 7	AK148820|Ipo7|233726|importin 7	AK169981|Ipo7|233726|importin 7
mm9_v1_chr1_+_40082070_40082114	0.0817969	NKX6-1,2.p2	AK159799|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr7_+_134380580_134380598	0.0817948	NKX6-1,2.p2	AK218462|Zfp553|233887|zinc finger protein 553
mm9_v1_chr8_+_13869640_13869740	0.0814012	NKX6-1,2.p2	NM_181854|Zfp828|101994|zinc finger protein 828	AK132164|Zfp828|101994|zinc finger protein 828	AK170835|Zfp828|101994|zinc finger protein 828	AK139963|Zfp828|101994|zinc finger protein 828	AK133990|Zfp828|101994|zinc finger protein 828	BC028991|Zfp828|101994|zinc finger protein 828	AK129444|Zfp828|101994|zinc finger protein 828
mm9_v1_chr1_-_183111470_183111575	0.0811883	NKX6-1,2.p2	AK211036|Wdr26|226757|WD repeat domain 26
mm9_v1_chr7_+_29573191_29573292	0.0811724	NKX6-1,2.p2	AK200274|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)
mm9_v1_chr5_-_37087261_37087293	0.0810157	NKX6-1,2.p2	AK037038|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr4_+_102262447_102262471	0.0806232	NKX6-1,2.p2	AK051102|Pde4b|18578|phosphodiesterase 4B, cAMP specific	NM_001177981|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC071259|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr15_-_74686747_74686747	0.0805682	NKX6-1,2.p2	BC116908|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2	BC119321|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2	NM_009991|Cyp11b2|13072|cytochrome P450, family 11, subfamily b, polypeptide 2
mm9_v1_chr7_+_140175699_140175731	0.0799939	NKX6-1,2.p2	AJ250693|Zranb1|360216|zinc finger, RAN-binding domain containing 1
mm9_v1_chr2_-_121890678_121890752	0.079097	NKX6-1,2.p2	BC019404|Spg11|214585|spastic paraplegia 11
mm9_v1_chr4_+_43576357_43576371	0.0780588	NKX6-1,2.p2	AK007665|Creb3|12913|cAMP responsive element binding protein 3
mm9_v1_chr2_+_80184132_80184149	0.0778711	NKX6-1,2.p2	
mm9_v1_chr1_-_34496128_34496223	0.0778427	NKX6-1,2.p2	AK162237|Ccdc115|69668|coiled-coil domain containing 115	AK154179|Ccdc115|69668|coiled-coil domain containing 115
mm9_v1_chr13_+_34056507_34056641	0.0777329	NKX6-1,2.p2	NM_001163239|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	NM_001163241|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	NM_020282|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK008138|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK008465|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK010842|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK049781|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	BC027629|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2
mm9_v1_chr6_-_38077491_38077509	0.0774607	NKX6-1,2.p2	BC059853|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene	BC042666|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr15_+_96117952_96118007	0.0768538	NKX6-1,2.p2	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr5_+_141717417_141717443	0.076842	NKX6-1,2.p2	AK147578|Sdk1|330222|sidekick homolog 1 (chicken)
mm9_v1_chr11_-_120588536_120588599	0.0764625	NKX6-1,2.p2	D89656|Dcxr|67880|dicarbonyl L-xylulose reductase	AK161732|Dcxr|67880|dicarbonyl L-xylulose reductase	AK002803|Dcxr|67880|dicarbonyl L-xylulose reductase	AK153521|Dcxr|67880|dicarbonyl L-xylulose reductase	AK004023|Dcxr|67880|dicarbonyl L-xylulose reductase	AK007627|Dcxr|67880|dicarbonyl L-xylulose reductase	NM_026428|Dcxr|67880|dicarbonyl L-xylulose reductase
mm9_v1_chr11_-_55223449_55223485	0.0762382	NKX6-1,2.p2	CT010306|Sparc|20692|secreted acidic cysteine rich glycoprotein
mm9_v1_chr18_-_74367362_74367371	0.0757151	NKX6-1,2.p2	AK172500|Ska1|66468|spindle and kinetochore associated complex subunit 1
mm9_v1_chr10_-_61441817_61441832	0.0757038	NKX6-1,2.p2	BC034164|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr13_+_23848805_23848889	0.075546	NKX6-1,2.p2	BC132186|Hist1h4b|326620|histone cluster 1, H4b	BC132212|Hist1h4b|326620|histone cluster 1, H4b	NM_178193|Hist1h4b|326620|histone cluster 1, H4b
mm9_v1_chr1_-_162281701_162281701	0.075546	NKX6-1,2.p2	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr8_+_107828491_107828506	0.0748269	NKX6-1,2.p2	AK212171|E2f4|104394|E2F transcription factor 4
mm9_v1_chr3_-_142456600_142456910	0.0732274	NKX6-1,2.p2	AK140746|Pkn2|109333|protein kinase N2	AK084887|Pkn2|109333|protein kinase N2	AK082921|Pkn2|109333|protein kinase N2
mm9_v1_chr3_+_102800607_102800650	0.0730517	NKX6-1,2.p2	
mm9_v1_chr8_+_73282270_73282383	0.0727843	NKX6-1,2.p2	
mm9_v1_chr7_-_52965801_52965838	0.0725655	NKX6-1,2.p2	AK198375|Sphk2|56632|sphingosine kinase 2	AK202851|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr12_+_118997623_118997625	0.0723709	NKX6-1,2.p2	AK134824|Rapgef5|217944|Rap guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr10_-_60561635_60561667	0.071781	NKX6-1,2.p2	
mm9_v1_chr6_-_113690657_113690706	0.0714633	NKX6-1,2.p2	AK003354|Sec13|110379|SEC13 homolog (S. cerevisiae)	NM_024206|Sec13|110379|SEC13 homolog (S. cerevisiae)	BC002128|Sec13|110379|SEC13 homolog (S. cerevisiae)
mm9_v1_chr8_-_28524173_28524415	0.0711192	NKX6-1,2.p2	AY574265|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AJ245706|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AK149262|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	BC031985|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	NM_021369|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6
mm9_v1_chr12_+_29334537_29334550	0.0710423	NKX6-1,2.p2	BC019411|Rnaseh1|19819|ribonuclease H1
mm9_v1_chr12_+_114312268_114312351	0.0698826	NKX6-1,2.p2	AK216671|Pacs2|217893|phosphofurin acidic cluster sorting protein 2
mm9_v1_chr16_-_17531176_17531234	0.0694745	NKX6-1,2.p2	AK154641|Thap7|69009|THAP domain containing 7
mm9_v1_chr10_-_17635007_17635085	0.0694502	NKX6-1,2.p2	BC094026|Heca|380629|headcase homolog (Drosophila)	AK134782|Heca|380629|headcase homolog (Drosophila)
mm9_v1_chr2_-_62411970_62412077	0.0689426	NKX6-1,2.p2	BC019190|Fap|14089|fibroblast activation protein	AK051959|Fap|14089|fibroblast activation protein	NM_007986|Fap|14089|fibroblast activation protein	Y10007|Fap|14089|fibroblast activation protein
mm9_v1_chr15_-_79158357_79158407	0.0686964	NKX6-1,2.p2	BC057209|Pla2g6|53357|phospholipase A2, group VI	AK183678|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr3_-_37024751_37024880	0.0685317	NKX6-1,2.p2	U41504|Il2|16183|interleukin 2	DQ836354|Il2|16183|interleukin 2	U41494|Il2|16183|interleukin 2	U41505|Il2|16183|interleukin 2	U41506|Il2|16183|interleukin 2	AY147902|Il2|16183|interleukin 2	X66058|Il2|16183|interleukin 2	AF065914|Il2|16183|interleukin 2	AF065915|Il2|16183|interleukin 2	AF065916|Il2|16183|interleukin 2	BC116845|Il2|16183|interleukin 2	BC116873|Il2|16183|interleukin 2	X01772|Il2|16183|interleukin 2	X73040|Il2|16183|interleukin 2	K02292|Il2|16183|interleukin 2	NM_008366|Il2|16183|interleukin 2	AF538059|Il2|16183|interleukin 2	AF542383|Il2|16183|interleukin 2	AF542384|Il2|16183|interleukin 2	AF542385|Il2|16183|interleukin 2
mm9_v1_chr3_-_94846454_94846515	0.0682699	NKX6-1,2.p2	AB029146|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	BC009005|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029144|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AK010969|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029142|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029143|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029145|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AF013099|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AF175574|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	NM_008951|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	BC016433|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AK145524|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
mm9_v1_chr13_+_3553690_3553705	0.0679676	NKX6-1,2.p2	AK207166|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2	AK213780|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr14_-_50940507_50940542	0.0673306	NKX6-1,2.p2	NM_146664|Olfr734|258658|olfactory receptor 734	BC141029|Olfr734|258658|olfactory receptor 734
mm9_v1_chr17_+_34077595_34077668	0.0668827	NKX6-1,2.p2	AK145068|Wdr46|57315|WD repeat domain 46	BC013527|Wdr46|57315|WD repeat domain 46	BC046977|Wdr46|57315|WD repeat domain 46	NM_020603|Wdr46|57315|WD repeat domain 46
mm9_v1_chr11_-_62190182_62190262	0.0662274	NKX6-1,2.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr6_+_134590957_134591017	0.0651858	NKX6-1,2.p2	NM_026371|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	BC023059|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr4_+_126698578_126698591	0.0647417	NKX6-1,2.p2	BC080848|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	BC089305|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr8_-_87784612_87784676	0.0647178	NKX6-1,2.p2	AK219106|Vps35|65114|vacuolar protein sorting 35
mm9_v1_chr10_-_40602908_40602950	0.0645463	NKX6-1,2.p2	AK004569|Cdc40|71713|cell division cycle 40 homolog (yeast)	AK135411|Cdc40|71713|cell division cycle 40 homolog (yeast)	BC061220|Cdc40|71713|cell division cycle 40 homolog (yeast)	AK084140|Cdc40|71713|cell division cycle 40 homolog (yeast)	BC147503|Cdc40|71713|cell division cycle 40 homolog (yeast)	BC158078|Cdc40|71713|cell division cycle 40 homolog (yeast)	NM_027879|Cdc40|71713|cell division cycle 40 homolog (yeast)
mm9_v1_chr2_+_35154311_35154429	0.0641715	NKX6-1,2.p2	AK188287|Gsn|227753|gelsolin	AK188608|Gsn|227753|gelsolin
mm9_v1_chr18_+_56899574_56899584	0.0639665	NKX6-1,2.p2	
mm9_v1_chr6_-_118361541_118361556	0.0637507	NKX6-1,2.p2	BC030906|Bms1|213895|BMS1 homolog, ribosome assembly protein (yeast)
mm9_v1_chr17_+_72119030_72119041	0.0633259	NKX6-1,2.p2	AK029962|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	NM_175378|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK018895|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK075758|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK161301|Clip4|78785|CAP-GLY domain containing linker protein family, member 4
mm9_v1_chr16_+_16870904_16870931	0.0630893	NKX6-1,2.p2	AB045324|Top3b|21976|topoisomerase (DNA) III beta
mm9_v1_chr16_-_96413824_96413863	0.0628594	NKX6-1,2.p2	AK031481|Lca5l|385668|Leber congenital amaurosis 5-like	AK029554|Lca5l|385668|Leber congenital amaurosis 5-like	AK133316|Lca5l|385668|Leber congenital amaurosis 5-like	NM_001001492|Lca5l|385668|Leber congenital amaurosis 5-like
mm9_v1_chr8_-_27109536_27109553	0.0627692	NKX6-1,2.p2	
mm9_v1_chr6_-_85894613_85894649	0.0626875	NKX6-1,2.p2	AK089506|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
mm9_v1_chr7_+_110368156_110368233	0.0624545	NKX6-1,2.p2	BC141016|Olfr594|258246|olfactory receptor 594	NM_207143|Olfr594|258246|olfactory receptor 594
mm9_v1_chr17_+_21625914_21625965	0.0621249	NKX6-1,2.p2	BC023798|Zfp53|24132|zinc finger protein 53	BC046328|Zfp53|24132|zinc finger protein 53	AK148857|Zfp53|24132|zinc finger protein 53	NM_013843|Zfp53|24132|zinc finger protein 53	AK147827|Zfp53|24132|zinc finger protein 53	AK030965|Zfp53|24132|zinc finger protein 53
mm9_v1_chr13_+_54203236_54203344	0.0617453	NKX6-1,2.p2	AK048238|Sfxn1|14057|sideroflexin 1
mm9_v1_chr2_-_7317513_7317626	0.06163	NKX6-1,2.p2	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr18_+_38611212_38611226	0.0615772	NKX6-1,2.p2	
mm9_v1_chr7_-_125629996_125630002	0.0611624	NKX6-1,2.p2	AK164927|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK081844|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr9_-_96233411_96233654	0.0610504	NKX6-1,2.p2	AK217555|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK213033|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK205378|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK217181|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK178890|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK181142|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK185963|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK212665|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK214140|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK216038|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218295|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218384|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr1_-_163061538_163061643	0.0609244	NKX6-1,2.p2	BC060183|Klhl20|226541|kelch-like 20 (Drosophila)	AK053102|Klhl20|226541|kelch-like 20 (Drosophila)	AK053371|Klhl20|226541|kelch-like 20 (Drosophila)	AK054169|Klhl20|226541|kelch-like 20 (Drosophila)	BC019571|Klhl20|226541|kelch-like 20 (Drosophila)	AK220547|Klhl20|226541|kelch-like 20 (Drosophila)	NM_001039482|Klhl20|226541|kelch-like 20 (Drosophila)
mm9_v1_chr7_-_139758954_139758967	0.0606706	NKX6-1,2.p2	AK187824|Oat|18242|ornithine aminotransferase
mm9_v1_chr11_+_29641691_29641734	0.0606398	NKX6-1,2.p2	AK003859|Rtn4|68585|reticulon 4
mm9_v1_chr15_-_103070291_103070312	0.0599254	NKX6-1,2.p2	
mm9_v1_chr9_+_119266498_119266759	0.0597689	NKX6-1,2.p2	AK143476|Xylb|102448|xylulokinase homolog (H. influenzae)	NM_001033209|Xylb|102448|xylulokinase homolog (H. influenzae)	BC138244|Xylb|102448|xylulokinase homolog (H. influenzae)	BC138247|Xylb|102448|xylulokinase homolog (H. influenzae)	AK170197|Xylb|102448|xylulokinase homolog (H. influenzae)	AK165440|Xylb|102448|xylulokinase homolog (H. influenzae)	AK165518|Xylb|102448|xylulokinase homolog (H. influenzae)	AK165759|Xylb|102448|xylulokinase homolog (H. influenzae)	AK164186|Xylb|102448|xylulokinase homolog (H. influenzae)	BC080743|Xylb|102448|xylulokinase homolog (H. influenzae)	BC025442|Xylb|102448|xylulokinase homolog (H. influenzae)
mm9_v1_chr1_+_93194900_93195016	0.0597336	NKX6-1,2.p2	AK036750|Scly|50880|selenocysteine lyase	NM_016717|Scly|50880|selenocysteine lyase	BC021389|Scly|50880|selenocysteine lyase	AK036533|Scly|50880|selenocysteine lyase	BC019879|Scly|50880|selenocysteine lyase	AF175407|Scly|50880|selenocysteine lyase	AK020864|Scly|50880|selenocysteine lyase	AK178608|Scly|50880|selenocysteine lyase	AK179665|Scly|50880|selenocysteine lyase	AK183254|Scly|50880|selenocysteine lyase	AK188684|Scly|50880|selenocysteine lyase
mm9_v1_chr17_+_13208071_13208135	0.0580118	NKX6-1,2.p2	AK206580|Sod2|20656|superoxide dismutase 2, mitochondrial
mm9_v1_chr8_+_58773321_58773362	0.0557159	NKX6-1,2.p2	NM_008278|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm9_v1_chr13_-_23853025_23853117	0.0553581	NKX6-1,2.p2	NM_178192|Hist1h4a|326619|histone cluster 1, H4a	AK016310|Hist1h4a|326619|histone cluster 1, H4a	BC119241|Hist1h4a|326619|histone cluster 1, H4a	BC119243|Hist1h4a|326619|histone cluster 1, H4a
mm9_v1_chr7_+_117161839_117161861	0.0552918	NKX6-1,2.p2	AK187705|Ipo7|233726|importin 7
mm9_v1_chr11_-_77893846_77893871	0.0547387	NKX6-1,2.p2	AF190730|Eral1|57837|Era (G-protein)-like 1 (E. coli)	AF190731|Eral1|57837|Era (G-protein)-like 1 (E. coli)	BC037603|Eral1|57837|Era (G-protein)-like 1 (E. coli)	AB049389|Eral1|57837|Era (G-protein)-like 1 (E. coli)	BC068271|Eral1|57837|Era (G-protein)-like 1 (E. coli)	AK018664|Eral1|57837|Era (G-protein)-like 1 (E. coli)
mm9_v1_chr2_-_84314191_84314337	0.0538012	NKX6-1,2.p2	AK167522|Tfpi|21788|tissue factor pathway inhibitor	AK028356|Tfpi|21788|tissue factor pathway inhibitor	NM_011576|Tfpi|21788|tissue factor pathway inhibitor
mm9_v1_chr15_+_84770146_84770307	0.053707	NKX6-1,2.p2	AK197009|Nup50|18141|nucleoporin 50
mm9_v1_chr3_-_62310907_62310910	0.0530646	NKX6-1,2.p2	AF448804|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	BC006615|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	NM_028136|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm9_v1_chr5_-_110537215_110537219	0.0527664	NKX6-1,2.p2	AK144812|Gtpbp6|107999|GTP binding protein 6 (putative)	AK152225|Gtpbp6|107999|GTP binding protein 6 (putative)	AK152972|Gtpbp6|107999|GTP binding protein 6 (putative)	NM_145147|Gtpbp6|107999|GTP binding protein 6 (putative)
mm9_v1_chr11_+_6446883_6447007	0.0506908	NKX6-1,2.p2	NM_001190343|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	NM_146014|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	AK155145|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	BC029157|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	AY442689|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)
mm9_v1_chr13_+_95558851_95558906	0.0505467	NKX6-1,2.p2	AK140276|Tbca|21371|tubulin cofactor A	BC087931|Tbca|21371|tubulin cofactor A	AK010859|Tbca|21371|tubulin cofactor A	BC055749|Tbca|21371|tubulin cofactor A	AK151218|Tbca|21371|tubulin cofactor A	AK168296|Tbca|21371|tubulin cofactor A	NM_009321|Tbca|21371|tubulin cofactor A	U05333|Tbca|21371|tubulin cofactor A	BC051475|Tbca|21371|tubulin cofactor A	BC034267|Tbca|21371|tubulin cofactor A
mm9_v1_chr19_+_34658016_34658052	0.0505052	NKX6-1,2.p2	AK153226|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	NM_010501|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	AK077459|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	AK151032|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	BC089563|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	L32974|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	BC003804|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3
mm9_v1_chr8_-_73421336_73421350	0.0502375	NKX6-1,2.p2	NM_029751|Rpl18a|76808|ribosomal protein L18A
mm9_v1_chr17_-_12888210_12888210	0.0499487	NKX6-1,2.p2	AK053045|Igf2r|16004|insulin-like growth factor 2 receptor
mm9_v1_chr15_+_12808445_12808493	0.0496831	NKX6-1,2.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr4_+_128365981_128366038	0.0493774	NKX6-1,2.p2	NM_018774|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC057571|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr8_+_94192087_94192089	0.0490323	NKX6-1,2.p2	
mm9_v1_chr19_+_46227031_46227037	0.0488693	NKX6-1,2.p2	AK143358|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr14_-_73762324_73762328	0.0485431	NKX6-1,2.p2	AK010248|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr2_-_167469448_167469594	0.04817	NKX6-1,2.p2	AK188596|Tmem189|407243|transmembrane protein 189	AK197639|Tmem189|407243|transmembrane protein 189
mm9_v1_chr3_-_58984006_58984035	0.0476414	NKX6-1,2.p2	AF295366|Gpr87|84111|G protein-coupled receptor 87	NM_032399|Gpr87|84111|G protein-coupled receptor 87	BC125653|Gpr87|84111|G protein-coupled receptor 87	BC125655|Gpr87|84111|G protein-coupled receptor 87
mm9_v1_chrX_-_75336699_75336712	0.0473987	NKX6-1,2.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr2_+_25264823_25264862	0.0462721	NKX6-1,2.p2	
mm9_v1_chr4_+_94406002_94406012	0.0462007	NKX6-1,2.p2	AK053336|Tek|21687|endothelial-specific receptor tyrosine kinase
mm9_v1_chr17_+_75578120_75578285	0.0451464	NKX6-1,2.p2	AK036047|Ltbp1|268977|latent transforming growth factor beta binding protein 1	NM_206958|Ltbp1|268977|latent transforming growth factor beta binding protein 1	AF280604|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr18_+_63158808_63158850	0.0448803	NKX6-1,2.p2	AK217399|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr4_+_21801372_21801440	0.0440142	NKX6-1,2.p2	AK035634|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr12_+_80309899_80309933	0.0434958	NKX6-1,2.p2	AK164157|Rdh12|77974|retinol dehydrogenase 12	AK039233|Rdh12|77974|retinol dehydrogenase 12	NM_030017|Rdh12|77974|retinol dehydrogenase 12	AK020927|Rdh12|77974|retinol dehydrogenase 12	BC016204|Rdh12|77974|retinol dehydrogenase 12	BC067213|Rdh12|77974|retinol dehydrogenase 12
mm9_v1_chr18_+_4375599_4375605	0.0433488	NKX6-1,2.p2	AK002680|Mtpap|67440|mitochondrial poly(A) polymerase	AK045203|Mtpap|67440|mitochondrial poly(A) polymerase	AK076565|Mtpap|67440|mitochondrial poly(A) polymerase	BC017535|Mtpap|67440|mitochondrial poly(A) polymerase	AK031070|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr9_-_103104394_103104479	0.0432029	NKX6-1,2.p2	AK030437|Srprb|20818|signal recognition particle receptor, B subunit	NM_009275|Srprb|20818|signal recognition particle receptor, B subunit	AK075583|Srprb|20818|signal recognition particle receptor, B subunit	AK007859|Srprb|20818|signal recognition particle receptor, B subunit	AK167039|Srprb|20818|signal recognition particle receptor, B subunit	U17343|Srprb|20818|signal recognition particle receptor, B subunit	BC003798|Srprb|20818|signal recognition particle receptor, B subunit	AK004854|Srprb|20818|signal recognition particle receptor, B subunit	AK008383|Srprb|20818|signal recognition particle receptor, B subunit	AK015469|Srprb|20818|signal recognition particle receptor, B subunit	AK160600|Srprb|20818|signal recognition particle receptor, B subunit
mm9_v1_chr7_+_73194834_73194897	0.0422244	NKX6-1,2.p2	AF008223|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6
mm9_v1_chr11_+_20443315_20443422	0.0415695	NKX6-1,2.p2	AB041541|Sertad2|58172|SERTA domain containing 2	BC014726|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr7_+_107789414_107789679	0.0415331	NKX6-1,2.p2	AK191812|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr16_-_23029154_23029175	0.0415036	NKX6-1,2.p2	NM_001102409|Kng2|385643|kininogen 2	NM_001102410|Kng2|385643|kininogen 2	NM_201375|Kng2|385643|kininogen 2
mm9_v1_chr11_-_51799215_51799347	0.0413096	NKX6-1,2.p2	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr8_-_124468764_124468811	0.0405888	NKX6-1,2.p2	BC030174|Car5a|12352|carbonic anhydrase 5a, mitochondrial	X51971|Car5a|12352|carbonic anhydrase 5a, mitochondrial	NM_007608|Car5a|12352|carbonic anhydrase 5a, mitochondrial
mm9_v1_chr7_+_30023324_30023364	0.0394369	NKX6-1,2.p2	NM_001110201|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	NM_029887|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	BC109331|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	AK135529|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr10_-_40602888_40602905	0.0393632	NKX6-1,2.p2	AK040680|Cdc40|71713|cell division cycle 40 homolog (yeast)
mm9_v1_chr9_+_32031833_32031859	0.0386984	NKX6-1,2.p2	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr5_-_139606339_139606437	0.0385546	NKX6-1,2.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr17_-_53985142_53985282	0.0384976	NKX6-1,2.p2	AK007384|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	AK144336|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	BC022665|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	AY005469|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	NM_026935|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2
mm9_v1_chr2_+_121282819_121282836	0.0382243	NKX6-1,2.p2	NM_026318|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	AK003580|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	BC038469|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	AK009109|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene
mm9_v1_chr4_+_126800830_126800906	0.038167	NKX6-1,2.p2	BC060297|Zmym6|100177|zinc finger, MYM-type 6
mm9_v1_chr9_+_65283563_65283648	0.0380843	NKX6-1,2.p2	AK009430|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	NM_027134|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	AK133492|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	BC019509|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase
mm9_v1_chr4_+_8533630_8533662	0.0377686	NKX6-1,2.p2	AK213817|Rab2a|59021|RAB2A, member RAS oncogene family	AK218701|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr8_+_4238862_4238907	0.0360305	NKX6-1,2.p2	AB005654|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK028772|Map2k7|26400|mitogen-activated protein kinase kinase 7	U74463|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr7_+_30023368_30023534	0.0359973	NKX6-1,2.p2	AK020444|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr14_-_37690597_37690679	0.0350847	NKX6-1,2.p2	AK084686|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr10_+_40199817_40199881	0.0338146	NKX6-1,2.p2	AK030146|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr17_-_37400606_37400693	0.0337072	NKX6-1,2.p2	NM_146510|Olfr98|258503|olfactory receptor 98	BC134363|Olfr97|258505|olfactory receptor 97	BC119060|Olfr98|258503|olfactory receptor 98	BC120744|Olfr98|258503|olfactory receptor 98
mm9_v1_chr10_-_90582332_90582452	0.0331349	NKX6-1,2.p2	AK195219|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK212727|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK216642|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK180258|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK188364|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr7_+_77509969_77510044	0.0330813	NKX6-1,2.p2	BC070425|B130024G19Rik|434198|RIKEN cDNA B130024G19 gene
mm9_v1_chr8_+_13171296_13171316	0.0328768	NKX6-1,2.p2	BC006785|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chrX_+_93435278_93435304	0.0326467	NKX6-1,2.p2	AK170206|F630028O10Rik|100038363|RIKEN cDNA F630028O10 gene	AK036748|F630028O10Rik|100038363|RIKEN cDNA F630028O10 gene
mm9_v1_chr18_+_37874471_37874595	0.030581	NKX6-1,2.p2	AK034910|Pcdhga7|93715|protocadherin gamma subfamily A, 7	BC077712|Pcdhga7|93715|protocadherin gamma subfamily A, 7	NM_033590|Pcdhga7|93715|protocadherin gamma subfamily A, 7	AY013801|Pcdhga7|93715|protocadherin gamma subfamily A, 7
mm9_v1_chr13_+_42776161_42776182	0.0305391	NKX6-1,2.p2	AK047654|Phactr1|218194|phosphatase and actin regulator 1	AY993932|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr5_-_144267802_144267897	0.0297978	NKX6-1,2.p2	AK211591|Rac1|19353|RAS-related C3 botulinum substrate 1	AK186906|Rac1|19353|RAS-related C3 botulinum substrate 1	AK190884|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr7_+_115133880_115133880	0.0281842	NKX6-1,2.p2	NM_146926|Olfr477|258928|olfactory receptor 477
mm9_v1_chr3_-_88576415_88576522	0.0281788	NKX6-1,2.p2	AK158745|Syt11|229521|synaptotagmin XI	AK144169|Syt11|229521|synaptotagmin XI	AK164082|Syt11|229521|synaptotagmin XI	BC054526|Syt11|229521|synaptotagmin XI	AK164368|Syt11|229521|synaptotagmin XI	NM_018804|Syt11|229521|synaptotagmin XI
mm9_v1_chr12_+_110884340_110884400	0.0274162	NKX6-1,2.p2	AF498294|Rian|75745|RNA imprinted and accumulated in nucleus	AB063319|Rian|75745|RNA imprinted and accumulated in nucleus	AK017440|Rian|75745|RNA imprinted and accumulated in nucleus
mm9_v1_chr15_+_79501284_79501317	0.0274151	NKX6-1,2.p2	AK008133|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK009868|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	NM_172609|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150787|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK013471|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK049442|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150360|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK152843|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK167803|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	BC056920|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)
mm9_v1_chr13_-_55201655_55201679	0.027375	NKX6-1,2.p2	AK052704|Uimc1|20184|ubiquitin interaction motif containing 1	NM_011307|Uimc1|20184|ubiquitin interaction motif containing 1	AK078206|Uimc1|20184|ubiquitin interaction motif containing 1	AK161177|Uimc1|20184|ubiquitin interaction motif containing 1	AK160926|Uimc1|20184|ubiquitin interaction motif containing 1
mm9_v1_chr5_+_104868321_104868417	0.0268552	NKX6-1,2.p2	BC014284|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr5_-_86539474_86539529	0.0264041	NKX6-1,2.p2	AK017687|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr9_-_101101334_101101402	0.0263794	NKX6-1,2.p2	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr15_-_103278889_103278900	0.0255619	NKX6-1,2.p2	BC048502|BC048502|223927|cDNA sequence BC048502	NM_177631|BC048502|223927|cDNA sequence BC048502	AK131692|BC048502|223927|cDNA sequence BC048502
mm9_v1_chr1_+_63223728_63223739	0.0255058	NKX6-1,2.p2	AF029844|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2
mm9_v1_chr2_+_177493957_177493997	0.025185	NKX6-1,2.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr1_-_53813191_53813277	0.0251792	NKX6-1,2.p2	
mm9_v1_chr6_-_122692754_122692762	0.0251759	NKX6-1,2.p2	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr4_-_131909543_131909559	0.0247788	NKX6-1,2.p2	AJ006837|Snhg3|399101|small nucleolar RNA host gene (non-protein coding) 3	AK076188|Snhg3|399101|small nucleolar RNA host gene (non-protein coding) 3
mm9_v1_chr6_-_56319574_56319627	0.0244655	NKX6-1,2.p2	AK077123|Pde1c|18575|phosphodiesterase 1C	AK015375|Pde1c|18575|phosphodiesterase 1C	AK014887|Pde1c|18575|phosphodiesterase 1C	AK133243|Pde1c|18575|phosphodiesterase 1C	AK029531|Pde1c|18575|phosphodiesterase 1C	NM_001159955|Pde1c|18575|phosphodiesterase 1C	NM_001159956|Pde1c|18575|phosphodiesterase 1C	NM_001159957|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chrX_-_110299092_110299131	0.0241171	NKX6-1,2.p2	BC047461|Chm|12662|choroidermia	AK035956|Chm|12662|choroidermia	AK141830|Chm|12662|choroidermia	AF218084|Chm|12662|choroidermia	NM_018818|Chm|12662|choroidermia	AK021238|Chm|12662|choroidermia
mm9_v1_chr5_+_116009475_116009502	0.0238715	NKX6-1,2.p2	NM_007475|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chrX_-_147531030_147531085	0.0234586	NKX6-1,2.p2	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chrX_+_71415963_71415984	0.0232059	NKX6-1,2.p2	
mm9_v1_chr3_-_38349112_38349206	0.0231219	NKX6-1,2.p2	BC051515|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr2_-_60589059_60589160	0.0210238	NKX6-1,2.p2	AK011205|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr5_-_122907269_122907331	0.020941	NKX6-1,2.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr2_+_181375295_181375333	0.0208742	NKX6-1,2.p2	AK182198|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK210126|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)
mm9_v1_chr10_+_120834189_120834223	0.0207658	NKX6-1,2.p2	
mm9_v1_chr16_+_87354429_87354497	0.0205646	NKX6-1,2.p2	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chr7_-_129245303_129245368	0.0192314	NKX6-1,2.p2	AK167447|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK089103|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC092379|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC060951|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018717|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK008788|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK009698|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK010307|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK011302|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018688|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK151719|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK152995|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	NM_028177|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr15_+_99543952_99544029	0.0191128	NKX6-1,2.p2	AK190322|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr1_+_171859069_171859069	0.0190268	NKX6-1,2.p2	AK141447|1700084C01Rik|78465|RIKEN cDNA 1700084C01 gene	NM_001033185|1700084C01Rik|78465|RIKEN cDNA 1700084C01 gene
mm9_v1_chr6_-_71773747_71773805	0.0180545	NKX6-1,2.p2	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr7_+_117161896_117161938	0.0179575	NKX6-1,2.p2	AY316153|Ipo7|233726|importin 7	NM_181517|Ipo7|233726|importin 7
mm9_v1_chr1_+_173612173_173612224	0.0173153	NKX6-1,2.p2	X17501|Cd48|12506|CD48 antigen	X53526|Cd48|12506|CD48 antigen	AK007741|Cd48|12506|CD48 antigen	NM_007649|Cd48|12506|CD48 antigen	AK151601|Cd48|12506|CD48 antigen	AB196820|Cd48|12506|CD48 antigen	AB196821|Cd48|12506|CD48 antigen	AB196822|Cd48|12506|CD48 antigen	AB196823|Cd48|12506|CD48 antigen
mm9_v1_chr2_+_74695081_74695176	0.0172752	NKX6-1,2.p2	
mm9_v1_chr8_+_36740640_36740782	0.0162514	NKX6-1,2.p2	AK010068|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr18_-_39646734_39646900	0.0161697	NKX6-1,2.p2	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr9_-_83003967_83004006	0.015882	NKX6-1,2.p2	
mm9_v1_chr2_+_17986187_17986431	0.0158401	NKX6-1,2.p2	AK154320|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	BC055298|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AK147388|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	BC069988|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AF010135|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AK220504|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AK045042|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr4_-_116358626_116358644	0.0146153	NKX6-1,2.p2	AK131819|AV051173|100502959|expressed sequence AV051173
mm9_v1_chr1_-_137482076_137482078	0.0144042	NKX6-1,2.p2	BC059840|Nav1|215690|neuron navigator 1
mm9_v1_chr3_-_144347983_144348061	0.0140854	NKX6-1,2.p2	
mm9_v1_chr11_-_116712559_116712636	0.0136922	NKX6-1,2.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr5_-_110225299_110225316	0.0136652	NKX6-1,2.p2	AK138792|A430073D23Rik|100310753|RIKEN cDNA A430073D23 gene
mm9_v1_chr15_+_4105188_4105206	0.0131205	NKX6-1,2.p2	
mm9_v1_chr13_-_55672471_55672500	0.0130615	NKX6-1,2.p2	AK155237|Fam193b|212483|family with sequence similarity 193, member B	NM_145382|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr9_+_120019498_120019516	0.0128828	NKX6-1,2.p2	AK078385|Slc25a38|208638|solute carrier family 25, member 38	BC010801|Slc25a38|208638|solute carrier family 25, member 38	NM_144793|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr7_+_147323460_147323573	0.0121936	NKX6-1,2.p2	NM_199301|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144625|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144453|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK140018|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	BC027306|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)
mm9_v1_chr17_+_25965977_25966025	0.0108995	NKX6-1,2.p2	AK155810|Jmjd8|72106|jumonji domain containing 8	NM_028101|Jmjd8|72106|jumonji domain containing 8	AK172073|Jmjd8|72106|jumonji domain containing 8	AK011308|Jmjd8|72106|jumonji domain containing 8	AK148079|Jmjd8|72106|jumonji domain containing 8	BC010800|Jmjd8|72106|jumonji domain containing 8
mm9_v1_chr12_-_32017267_32017279	0.0107109	NKX6-1,2.p2	AK209175|Dld|13382|dihydrolipoamide dehydrogenase
mm9_v1_chrX_+_20938001_20938025	0.0100036	NKX6-1,2.p2	BC137827|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr8_+_4238838_4238860	0.00939055	NKX6-1,2.p2	AK049267|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr3_+_113733590_113733642	0.009169	NKX6-1,2.p2	AK157734|Col11a1|12814|collagen, type XI, alpha 1	D38162|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr11_-_77538784_77538787	0.0091645	NKX6-1,2.p2	M21473|Cryba1|12957|crystallin, beta A1
mm9_v1_chr19_+_46227052_46227083	0.00868711	NKX6-1,2.p2	BC082336|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1	AK019933|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1	BC011335|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr3_+_113733457_113733508	0.00832434	NKX6-1,2.p2	AK140136|Col11a1|12814|collagen, type XI, alpha 1	NM_007729|Col11a1|12814|collagen, type XI, alpha 1	BC052161|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr4_+_106323673_106323718	0.00820331	NKX6-1,2.p2	NM_001083887|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)	NM_172272|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)	AK154150|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)	BC038817|Pars2|230577|prolyl-tRNA synthetase (mitochondrial)(putative)
mm9_v1_chr12_+_30213224_30213265	0.00779938	NKX6-1,2.p2	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr18_-_55149819_55149833	0.00764437	NKX6-1,2.p2	AK051334|Zfp608|269023|zinc finger protein 608	NM_175751|Zfp608|269023|zinc finger protein 608
mm9_v1_chr11_+_98547296_98547343	0.00745132	NKX6-1,2.p2	AK180273|Psmd3|22123|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
mm9_v1_chr5_+_144309573_144309659	0.00723068	NKX6-1,2.p2	NM_026050|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	NM_133703|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK075875|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK076127|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC012231|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK156614|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC100440|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK165304|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK014805|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK005298|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene
mm9_v1_chr12_-_32635061_32635121	0.00580476	NKX6-1,2.p2	AK028949|Hbp1|73389|high mobility group box transcription factor 1	AK132503|Hbp1|73389|high mobility group box transcription factor 1	AK139211|Hbp1|73389|high mobility group box transcription factor 1	AK142187|Hbp1|73389|high mobility group box transcription factor 1	AK053005|Hbp1|73389|high mobility group box transcription factor 1	AK028674|Hbp1|73389|high mobility group box transcription factor 1	BC026853|Hbp1|73389|high mobility group box transcription factor 1
mm9_v1_chr5_+_120120870_120121055	0.00575493	NKX6-1,2.p2	BC096551|Tbx3|21386|T-box 3	AK052453|Tbx3|21386|T-box 3
mm9_v1_chr3_-_62310885_62310902	0.00558462	NKX6-1,2.p2	BC064890|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	BC138061|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	AK129373|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm9_v1_chr19_-_61216675_61216742	0.00549513	NKX6-1,2.p2	BC055757|Zfp826|414758|zinc finger protein 826	AK045970|Zfp826|414758|zinc finger protein 826	AK029211|Zfp826|414758|zinc finger protein 826	AK164548|Zfp826|414758|zinc finger protein 826	BC086681|Zfp826|414758|zinc finger protein 826	AK139999|Zfp826|414758|zinc finger protein 826	AK039536|Zfp826|414758|zinc finger protein 826
mm9_v1_chr5_+_91456489_91456542	0.00451217	NKX6-1,2.p2	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chr4_+_126850123_126850181	0.00424563	NKX6-1,2.p2	AK158868|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr17_+_24563575_24563652	0.00340771	NKX6-1,2.p2	AK004838|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	AK029481|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	NM_010023|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	AK077386|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	BC054444|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	BC022712|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	Z14049|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)
mm9_v1_chr11_-_51807636_51807676	0.00312002	NKX6-1,2.p2	AK017280|5430406J06Rik|73848|RIKEN cDNA 5430406J06 gene
mm9_v1_chr9_-_45636638_45636736	0.00245193	NKX6-1,2.p2	AK158671|Cep164|214552|centrosomal protein 164	NM_001081373|Cep164|214552|centrosomal protein 164
mm9_v1_chr2_-_177691943_177692036	0.00225669	NKX6-1,2.p2	BC042711|Gm14326|665211|predicted gene 14326	BC079554|Gm14326|665211|predicted gene 14326	NM_001190302|Gm14326|665211|predicted gene 14326
mm9_v1_chr17_+_70774131_70774133	0.00224759	NKX6-1,2.p2	NM_027712|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	NM_177639|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	BC062120|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr17_+_8118823_8118919	0.002081	NKX6-1,2.p2	NM_145968|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC030886|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC039780|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC150728|Tagap|72536|T-cell activation Rho GTPase-activating protein
mm9_v1_chr1_+_53353995_53354002	0.00189453	NKX6-1,2.p2	BC023903|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr2_+_88231404_88231405	0.00157275	NKX6-1,2.p2	BC140109|Olfr1178|258203|olfactory receptor 1178	BC140153|Olfr1178|258203|olfactory receptor 1178	BC143174|Olfr1178|258203|olfactory receptor 1178	NM_001011868|Olfr1178|258203|olfactory receptor 1178
mm9_v1_chr15_-_83895778_83895778	0.00146591	NKX6-1,2.p2	BC065111|Efcab6|77627|EF-hand calcium binding domain 6	NM_029946|Efcab6|77627|EF-hand calcium binding domain 6
mm9_v1_chr4_+_19935558_19935623	0.0013209	NKX6-1,2.p2	AK050374|Ttpa|50500|tocopherol (alpha) transfer protein	BC099869|Ttpa|50500|tocopherol (alpha) transfer protein	BC099870|Ttpa|50500|tocopherol (alpha) transfer protein	BC099871|Ttpa|50500|tocopherol (alpha) transfer protein	NM_015767|Ttpa|50500|tocopherol (alpha) transfer protein	BC099868|Ttpa|50500|tocopherol (alpha) transfer protein	AF218416|Ttpa|50500|tocopherol (alpha) transfer protein	AK004882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr6_-_85854877_85854931	0.000995267	NKX6-1,2.p2	BC029200|1700019G17Rik|75541|RIKEN cDNA 1700019G17 gene	NM_029331|1700019G17Rik|75541|RIKEN cDNA 1700019G17 gene
