mm9_v1_chr12_+_3891743_3891823	5.23243	GUAACAG	AF480164|Dnmt3a|13435|DNA methyltransferase 3A	NM_153743|Dnmt3a|13435|DNA methyltransferase 3A	AK157792|Dnmt3a|13435|DNA methyltransferase 3A	AK077792|Dnmt3a|13435|DNA methyltransferase 3A	AK136170|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr3_+_5218545_5218658	2.7982	GUAACAG	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr7_+_119822831_119822885	2.20967	GUAACAG	S74227|Tead1|21676|TEA domain family member 1	AK140307|Tead1|21676|TEA domain family member 1	NM_001166584|Tead1|21676|TEA domain family member 1	NM_009346|Tead1|21676|TEA domain family member 1	AK148375|Tead1|21676|TEA domain family member 1
mm9_v1_chr17_+_15841889_15842002	2.17002	GUAACAG	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr2_+_29917543_29917687	2.01161	GUAACAG	BC018255|Set|56086|SET nuclear oncogene	NM_023871|Set|56086|SET nuclear oncogene	AB044937|Set|56086|SET nuclear oncogene	AK011630|Set|56086|SET nuclear oncogene	BC103791|Set|56086|SET nuclear oncogene
mm9_v1_chr1_-_153937364_153937449	1.91021	GUAACAG	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr2_+_4802609_4802674	1.8709	GUAACAG	BC066037|Sephs1|109079|selenophosphate synthetase 1	NM_175400|Sephs1|109079|selenophosphate synthetase 1	BC065165|Sephs1|109079|selenophosphate synthetase 1	AK044971|Sephs1|109079|selenophosphate synthetase 1
mm9_v1_chr5_+_34064372_34064491	1.86057	GUAACAG	NM_008010|Fgfr3|14184|fibroblast growth factor receptor 3	NM_001163215|Fgfr3|14184|fibroblast growth factor receptor 3	AK143592|Fgfr3|14184|fibroblast growth factor receptor 3	BC053056|Fgfr3|14184|fibroblast growth factor receptor 3	M81342|Fgfr3|14184|fibroblast growth factor receptor 3	X58255|Fgfr3|14184|fibroblast growth factor receptor 3
mm9_v1_chr2_+_92024338_92024494	1.81059	GUAACAG	NM_138755|Phf21a|192285|PHD finger protein 21A	AB105178|Phf21a|192285|PHD finger protein 21A	AK089411|Phf21a|192285|PHD finger protein 21A	BC019181|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr9_+_72655019_72655080	1.79068	GUAACAG	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr6_-_39156706_39156787	1.72972	GUAACAG	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr5_+_124889925_124890006	1.69183	GUAACAG	NM_030241|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK030904|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK088097|Setd8|67956|SET domain containing (lysine methyltransferase) 8	BC108333|Setd8|67956|SET domain containing (lysine methyltransferase) 8
mm9_v1_chr6_+_125045998_125046234	1.56212	GUAACAG	AK147695|Chd4|107932|chromodomain helicase DNA binding protein 4	AK040005|Chd4|107932|chromodomain helicase DNA binding protein 4	AK132004|Chd4|107932|chromodomain helicase DNA binding protein 4	BC058578|Chd4|107932|chromodomain helicase DNA binding protein 4	NM_145979|Chd4|107932|chromodomain helicase DNA binding protein 4	AK145532|Chd4|107932|chromodomain helicase DNA binding protein 4
mm9_v1_chr17_-_79420125_79420180	1.55932	GUAACAG	NM_001171004|Prkd3|75292|protein kinase D3	NM_029239|Prkd3|75292|protein kinase D3
mm9_v1_chr12_-_85559793_85559836	1.41683	GUAACAG	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr16_+_44139908_44140168	1.37124	GUAACAG	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr8_-_27229485_27229708	1.30709	GUAACAG	AY223806|Hook3|320191|hook homolog 3 (Drosophila)	BC090960|Hook3|320191|hook homolog 3 (Drosophila)	AK054263|Hook3|320191|hook homolog 3 (Drosophila)	AK170858|Hook3|320191|hook homolog 3 (Drosophila)	AK080377|Hook3|320191|hook homolog 3 (Drosophila)	AK145149|Hook3|320191|hook homolog 3 (Drosophila)	NM_207659|Hook3|320191|hook homolog 3 (Drosophila)
mm9_v1_chr13_+_109106530_109106573	1.27939	GUAACAG	NM_178683|Depdc1b|218581|DEP domain containing 1B	AK077676|Depdc1b|218581|DEP domain containing 1B	BC152330|Depdc1b|218581|DEP domain containing 1B	BC152331|Depdc1b|218581|DEP domain containing 1B	AK083480|Depdc1b|218581|DEP domain containing 1B	AK036550|Depdc1b|218581|DEP domain containing 1B	AK043283|Depdc1b|218581|DEP domain containing 1B
mm9_v1_chr2_+_155207581_155207616	1.23181	GUAACAG	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr3_+_61168428_61168660	1.14866	GUAACAG	NM_028712|Rap2b|74012|RAP2B, member of RAS oncogene family	AK045030|Rap2b|74012|RAP2B, member of RAS oncogene family	AK014462|Rap2b|74012|RAP2B, member of RAS oncogene family	AK042941|Rap2b|74012|RAP2B, member of RAS oncogene family	AK163186|Rap2b|74012|RAP2B, member of RAS oncogene family	AK150187|Rap2b|74012|RAP2B, member of RAS oncogene family	BC046528|Rap2b|74012|RAP2B, member of RAS oncogene family
mm9_v1_chr1_+_133807034_133807132	1.07682	GUAACAG	NM_001145804|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	NM_175294|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AB049825|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AK078816|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	BC039951|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm9_v1_chr7_+_75097142_75097267	1.00239	GUAACAG	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr18_+_83080270_83080270	0.985394	GUAACAG	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr15_-_64214427_64214520	0.972668	GUAACAG	BC094581|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	NM_010026|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr2_+_92025639_92025639	0.943429	GUAACAG	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr2_-_179711350_179711395	0.932323	GUAACAG	NM_001081092|Taf4a|228980|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr17_-_46419939_46419978	0.929327	GUAACAG	AK169889|Tjap1|74094|tight junction associated protein 1	AK164925|Tjap1|74094|tight junction associated protein 1	BC023316|Tjap1|74094|tight junction associated protein 1	AK002882|Tjap1|74094|tight junction associated protein 1	NM_028751|Tjap1|74094|tight junction associated protein 1
mm9_v1_chr15_+_96117952_96118007	0.865901	GUAACAG	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr17_-_71202829_71202871	0.842639	GUAACAG	AK160193|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164074|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr17_-_51971946_51971971	0.824987	GUAACAG	AK088563|Satb1|20230|special AT-rich sequence binding protein 1	AK134040|Satb1|20230|special AT-rich sequence binding protein 1	U05252|Satb1|20230|special AT-rich sequence binding protein 1	AK037740|Satb1|20230|special AT-rich sequence binding protein 1	NM_009122|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr16_-_32079317_32079415	0.814163	GUAACAG	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr9_-_114753191_114753285	0.808031	GUAACAG	BC027554|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK012262|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	NM_027294|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK137729|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8	AK161079|Cmtm8|70031|CKLF-like MARVEL transmembrane domain containing 8
mm9_v1_chr7_-_107007359_107007399	0.801957	GUAACAG	AK134578|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	NM_025668|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK017504|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK168173|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr1_-_84835871_84836168	0.801108	GUAACAG	AK158807|Trip12|14897|thyroid hormone receptor interactor 12	NM_133975|Trip12|14897|thyroid hormone receptor interactor 12
mm9_v1_chr11_-_82684653_82684724	0.775762	GUAACAG	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr2_+_112106470_112106612	0.767841	GUAACAG	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr6_+_113027481_113027632	0.758337	GUAACAG	AK149622|Setd5|72895|SET domain containing 5	AK150198|Setd5|72895|SET domain containing 5	AK167431|Setd5|72895|SET domain containing 5	BC056502|Setd5|72895|SET domain containing 5	BC056206|Setd5|72895|SET domain containing 5	AK122551|Setd5|72895|SET domain containing 5	NM_028385|Setd5|72895|SET domain containing 5
mm9_v1_chr11_-_77421308_77421363	0.709007	GUAACAG	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr18_+_5591869_5591894	0.686656	GUAACAG	AK014114|Zeb1|21417|zinc finger E-box binding homeobox 1	U26259|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139768|Zeb1|21417|zinc finger E-box binding homeobox 1	BC139769|Zeb1|21417|zinc finger E-box binding homeobox 1	D76432|Zeb1|21417|zinc finger E-box binding homeobox 1	NM_011546|Zeb1|21417|zinc finger E-box binding homeobox 1	BC090987|Zeb1|21417|zinc finger E-box binding homeobox 1	AK135371|Zeb1|21417|zinc finger E-box binding homeobox 1
mm9_v1_chr8_-_36558514_36558598	0.679609	GUAACAG	AK165026|Eri1|67276|exoribonuclease 1	BC046412|Eri1|67276|exoribonuclease 1	AK172005|Eri1|67276|exoribonuclease 1	AK144223|Eri1|67276|exoribonuclease 1	AK014041|Eri1|67276|exoribonuclease 1	AK014410|Eri1|67276|exoribonuclease 1	NM_026067|Eri1|67276|exoribonuclease 1
mm9_v1_chr1_+_168931547_168931719	0.67574	GUAACAG	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chr12_-_28027541_28027588	0.66512	GUAACAG	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chrX_-_6765768_6765839	0.659976	GUAACAG	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr8_+_130882920_130882997	0.659813	GUAACAG	AK082992|Nrp1|18186|neuropilin 1	AK083052|Nrp1|18186|neuropilin 1	AK164378|Nrp1|18186|neuropilin 1	NM_008737|Nrp1|18186|neuropilin 1	BC026730|Nrp1|18186|neuropilin 1	BC032048|Nrp1|18186|neuropilin 1	AK148372|Nrp1|18186|neuropilin 1
mm9_v1_chr19_+_55816299_55816310	0.642228	GUAACAG	NM_001142918|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142919|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142920|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142921|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142922|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142923|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_009333|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	BC011397|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chr4_-_129012546_129012617	0.635468	GUAACAG	U35141|Rbbp4|19646|retinoblastoma binding protein 4	AK166437|Rbbp4|19646|retinoblastoma binding protein 4	AK082419|Rbbp4|19646|retinoblastoma binding protein 4	BC138568|Rbbp4|19646|retinoblastoma binding protein 4	BC138570|Rbbp4|19646|retinoblastoma binding protein 4	NM_009030|Rbbp4|19646|retinoblastoma binding protein 4
mm9_v1_chr14_+_47502637_47502773	0.633368	GUAACAG	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr5_-_25004598_25004626	0.631038	GUAACAG	AK044828|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	NM_001081383|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	AK087368|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr14_-_98568744_98568810	0.62442	GUAACAG	AF129510|Dach1|13134|dachshund 1 (Drosophila)	BC052005|Dach1|13134|dachshund 1 (Drosophila)	BC059934|Dach1|13134|dachshund 1 (Drosophila)	NM_001038610|Dach1|13134|dachshund 1 (Drosophila)	NM_007826|Dach1|13134|dachshund 1 (Drosophila)
mm9_v1_chr17_-_71199129_71199153	0.617395	GUAACAG	NM_001164076|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr5_-_20561610_20561764	0.615779	GUAACAG	X63440|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12	BC051980|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12	NM_011203|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12	AK154107|Ptpn12|19248|protein tyrosine phosphatase, non-receptor type 12
mm9_v1_chr18_+_35758269_35758376	0.613431	GUAACAG	AK146327|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK167545|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169207|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169411|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK154453|Paip2|67869|polyadenylate-binding protein-interacting protein 2	BC010190|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK150957|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK005462|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK009909|Paip2|67869|polyadenylate-binding protein-interacting protein 2	NM_026420|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr7_-_107128967_107128967	0.60941	GUAACAG	NM_175388|Rnf169|108937|ring finger protein 169
mm9_v1_chr6_-_72849854_72850037	0.601982	GUAACAG	NM_019715|Kcmf1|74287|potassium channel modulatory factor 1
mm9_v1_chrX_-_50723622_50723678	0.595355	GUAACAG	BC100442|Mospd1|70380|motile sperm domain containing 1	BC018329|Mospd1|70380|motile sperm domain containing 1	BC085100|Mospd1|70380|motile sperm domain containing 1	AK007533|Mospd1|70380|motile sperm domain containing 1	NM_027409|Mospd1|70380|motile sperm domain containing 1	AK088275|Mospd1|70380|motile sperm domain containing 1	AK139795|Mospd1|70380|motile sperm domain containing 1
mm9_v1_chr1_+_191552133_191552202	0.594174	GUAACAG	AK037646|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	NM_008976|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK086524|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK028783|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14
mm9_v1_chr10_+_127176590_127176697	0.593123	GUAACAG	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr2_-_115890747_115890848	0.579881	GUAACAG	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr15_-_50721552_50721725	0.576767	GUAACAG	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr6_-_13627853_13628000	0.572885	GUAACAG	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr6_+_83276009_83276097	0.547409	GUAACAG	AK028416|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK163300|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK172205|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	NM_145571|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK167515|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK170691|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	BC009149|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK158228|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	AK028695|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)	BC033463|Mobkl1b|232157|MOB1, Mps One Binder kinase activator-like 1B (yeast)
mm9_v1_chr17_-_51951378_51951378	0.537289	GUAACAG	AK158518|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163630|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr5_+_137960107_137960139	0.528893	GUAACAG	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr1_-_163181251_163181302	0.528061	GUAACAG	BC013489|Prdx6|11758|peroxiredoxin 6	AK172888|Prdx6|11758|peroxiredoxin 6	AF004670|Prdx6|11758|peroxiredoxin 6	AK168223|Prdx6|11758|peroxiredoxin 6	AK076191|Prdx6|11758|peroxiredoxin 6	AK035097|Prdx6|11758|peroxiredoxin 6	AK081980|Prdx6|11758|peroxiredoxin 6	AF093852|Prdx6|11758|peroxiredoxin 6	AK030413|Prdx6|11758|peroxiredoxin 6	AK161710|Prdx6|11758|peroxiredoxin 6	BC061181|Prdx6|11758|peroxiredoxin 6	NM_007453|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr3_-_66100663_66100758	0.527868	GUAACAG	AK164725|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AB085187|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_145820|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	BC075649|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chr17_-_71200462_71200609	0.526948	GUAACAG	BC005724|Tgif1|21815|TGFB-induced factor homeobox 1	AK008909|Tgif1|21815|TGFB-induced factor homeobox 1	NM_009372|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chrX_+_10294490_10294637	0.51805	GUAACAG	NM_001166635|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	NM_026524|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK160062|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK090003|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK159166|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK172143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC004014|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC052899|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK151153|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr17_-_51972514_51972614	0.517296	GUAACAG	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr7_+_134628622_134628734	0.505277	GUAACAG	NM_010183|Fbrs|14123|fibrosin
mm9_v1_chr15_+_38837839_38837957	0.475298	GUAACAG	NM_008056|Fzd6|14368|frizzled homolog 6 (Drosophila)	BC026150|Fzd6|14368|frizzled homolog 6 (Drosophila)	AK088399|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr9_-_86465373_86465470	0.471527	GUAACAG	BC138700|Pgm3|109785|phosphoglucomutase 3	AK051706|Pgm3|109785|phosphoglucomutase 3	AK032776|Pgm3|109785|phosphoglucomutase 3	AK049337|Pgm3|109785|phosphoglucomutase 3	AK169141|Pgm3|109785|phosphoglucomutase 3	AK169082|Pgm3|109785|phosphoglucomutase 3	AK169787|Pgm3|109785|phosphoglucomutase 3	AK165513|Pgm3|109785|phosphoglucomutase 3	AK013402|Pgm3|109785|phosphoglucomutase 3	AK036561|Pgm3|109785|phosphoglucomutase 3	AK049758|Pgm3|109785|phosphoglucomutase 3	AK028066|Pgm3|109785|phosphoglucomutase 3	AK160913|Pgm3|109785|phosphoglucomutase 3	AK043547|Pgm3|109785|phosphoglucomutase 3	NM_001163746|Pgm3|109785|phosphoglucomutase 3	NM_028352|Pgm3|109785|phosphoglucomutase 3
mm9_v1_chr12_+_72116953_72117066	0.459292	GUAACAG	NM_001081195|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC025436|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK050594|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AK087354|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC080780|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	BC058209|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)	AY116674|Arid4a|238247|AT rich interactive domain 4A (RBP1-like)
mm9_v1_chr8_-_8660610_8660772	0.458231	GUAACAG	U30244|Efnb2|13642|ephrin B2	CT010381|Efnb2|13642|ephrin B2	U16819|Efnb2|13642|ephrin B2	L38847|Efnb2|13642|ephrin B2	NM_010111|Efnb2|13642|ephrin B2
mm9_v1_chr6_+_146837012_146837178	0.454261	GUAACAG	NM_001170433|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	NM_026221|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	AK146575|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	BC072603|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	AK154482|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	AK173133|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	BC035209|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)
mm9_v1_chr11_+_59953583_59953674	0.447149	GUAACAG	NM_001037764|Rai1|19377|retinoic acid induced 1	AY548172|Rai1|19377|retinoic acid induced 1	D29801|Rai1|19377|retinoic acid induced 1
mm9_v1_chr2_+_49307005_49307084	0.445953	GUAACAG	NM_172663|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)	AK031025|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)
mm9_v1_chr7_-_72516109_72516162	0.443582	GUAACAG	D14340|Tjp1|21872|tight junction protein 1	NM_001163574|Tjp1|21872|tight junction protein 1	NM_009386|Tjp1|21872|tight junction protein 1
mm9_v1_chr8_-_91568060_91568092	0.442412	GUAACAG	BC062937|Sall1|58198|sal-like 1 (Drosophila)	NM_021390|Sall1|58198|sal-like 1 (Drosophila)
mm9_v1_chr8_+_81033220_81033473	0.441851	GUAACAG	NM_029736|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK160402|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK079901|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152752|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152849|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK010834|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK165983|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK040517|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116666|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116717|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825926|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825927|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825928|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm9_v1_chrX_+_162782484_162782852	0.436664	GUAACAG	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr3_+_88336316_88336316	0.436205	GUAACAG	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr1_-_64784316_64784324	0.423827	GUAACAG	AK039402|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_001042659|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_022721|Fzd5|14367|frizzled homolog 5 (Drosophila)	AK030111|Fzd5|14367|frizzled homolog 5 (Drosophila)
mm9_v1_chr4_-_135129534_135129534	0.423808	GUAACAG	BC089372|Grhl3|230824|grainyhead-like 3 (Drosophila)	NM_001013756|Grhl3|230824|grainyhead-like 3 (Drosophila)
mm9_v1_chr1_+_140860285_140860402	0.423795	GUAACAG	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr9_-_65972570_65972698	0.419339	GUAACAG	AK155746|Snx1|56440|sorting nexin 1	AK167993|Snx1|56440|sorting nexin 1	BC066189|Snx1|56440|sorting nexin 1	AK154079|Snx1|56440|sorting nexin 1	AK149850|Snx1|56440|sorting nexin 1	AB019214|Snx1|56440|sorting nexin 1	AK167177|Snx1|56440|sorting nexin 1	BC066044|Snx1|56440|sorting nexin 1	AK161241|Snx1|56440|sorting nexin 1	AK168742|Snx1|56440|sorting nexin 1	AF154120|Snx1|56440|sorting nexin 1	NM_019727|Snx1|56440|sorting nexin 1
mm9_v1_chr15_-_38008565_38008625	0.416108	GUAACAG	NM_001081359|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5	NM_001112721|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chr13_+_48356795_48356817	0.412499	GUAACAG	NM_031166|Id4|15904|inhibitor of DNA binding 4	X75018|Id4|15904|inhibitor of DNA binding 4	BC145367|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr10_-_117283020_117283117	0.406977	GUAACAG	BC052480|Rap1b|215449|RAS related protein 1b	NM_024457|Rap1b|215449|RAS related protein 1b	AK163242|Rap1b|215449|RAS related protein 1b
mm9_v1_chr5_-_64360058_64360140	0.406467	GUAACAG	AK133845|Rell1|100532|RELT-like 1	AK159944|Rell1|100532|RELT-like 1	AK161061|Rell1|100532|RELT-like 1	BC031198|Rell1|100532|RELT-like 1	BC066137|Rell1|100532|RELT-like 1	BC066160|Rell1|100532|RELT-like 1	AK140108|Rell1|100532|RELT-like 1	NM_145923|Rell1|100532|RELT-like 1
mm9_v1_chr18_+_83084023_83084023	0.395286	GUAACAG	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr2_-_164268672_164268690	0.394882	GUAACAG	BC005679|Sdc4|20971|syndecan 4	AK134326|Sdc4|20971|syndecan 4	AK153445|Sdc4|20971|syndecan 4	AK145805|Sdc4|20971|syndecan 4	AK159215|Sdc4|20971|syndecan 4	AK164952|Sdc4|20971|syndecan 4	D89571|Sdc4|20971|syndecan 4	NM_011521|Sdc4|20971|syndecan 4
mm9_v1_chr5_-_108561512_108561635	0.391084	GUAACAG	AK033463|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014065|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK140979|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK159813|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK170036|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC020076|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC132023|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC138226|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK151650|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK078317|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK042931|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014490|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	NM_028876|Tmed5|73130|transmembrane emp24 protein transport domain containing 5
mm9_v1_chr12_+_4924157_4924219	0.384549	GUAACAG	AK161170|Atad2b|320817|ATPase family, AAA domain containing 2B	NM_001099628|Atad2b|320817|ATPase family, AAA domain containing 2B	AK080580|Atad2b|320817|ATPase family, AAA domain containing 2B	AK085232|Atad2b|320817|ATPase family, AAA domain containing 2B
mm9_v1_chr5_-_52581705_52581765	0.380696	GUAACAG	BC003745|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	BC100343|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK146441|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK145983|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151015|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151757|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK149869|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168323|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168835|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK169174|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_001042620|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_007839|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr11_+_75492764_75492890	0.369612	GUAACAG	AK154987|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028179|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK163291|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK152549|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK088519|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK052795|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK139089|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK036905|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028488|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	NM_133656|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161356|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161761|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC012216|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC031149|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	S72408|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AF239673|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm9_v1_chr2_-_37278415_37278506	0.354921	GUAACAG	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr2_-_115890247_115890356	0.352307	GUAACAG	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr7_-_54263783_54263783	0.349062	GUAACAG	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr12_-_40763924_40763965	0.348049	GUAACAG	BC029234|Arl4a|11861|ADP-ribosylation factor-like 4A	BC003725|Arl4a|11861|ADP-ribosylation factor-like 4A	AK168618|Arl4a|11861|ADP-ribosylation factor-like 4A	AK048606|Arl4a|11861|ADP-ribosylation factor-like 4A	AK137751|Arl4a|11861|ADP-ribosylation factor-like 4A	NM_007487|Arl4a|11861|ADP-ribosylation factor-like 4A
mm9_v1_chr2_-_173102033_173102038	0.336802	GUAACAG	AK008976|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	AK136450|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	NM_022995|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr19_-_28085534_28085655	0.327411	GUAACAG	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chrX_+_70884742_70884779	0.32574	GUAACAG	AK141667|Dusp9|75590|dual specificity phosphatase 9	AY316312|Dusp9|75590|dual specificity phosphatase 9	BC100309|Dusp9|75590|dual specificity phosphatase 9	NM_029352|Dusp9|75590|dual specificity phosphatase 9
mm9_v1_chr6_+_38383918_38383949	0.323933	GUAACAG	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr17_-_26206121_26206180	0.321762	GUAACAG	NM_001162868|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)	NM_001162869|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)
mm9_v1_chr14_-_70919994_70920083	0.321315	GUAACAG	BC066062|Bmp1|12153|bone morphogenetic protein 1	AK220295|Bmp1|12153|bone morphogenetic protein 1	AK158218|Bmp1|12153|bone morphogenetic protein 1	AK154239|Bmp1|12153|bone morphogenetic protein 1	NM_009755|Bmp1|12153|bone morphogenetic protein 1
mm9_v1_chr5_-_20457608_20457646	0.319567	GUAACAG	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chr1_-_183950050_183950110	0.312913	GUAACAG	NM_001083120|Enah|13800|enabled homolog (Drosophila)	NM_001083121|Enah|13800|enabled homolog (Drosophila)	NM_008680|Enah|13800|enabled homolog (Drosophila)	NM_010135|Enah|13800|enabled homolog (Drosophila)
mm9_v1_chr7_-_123182257_123182257	0.311918	GUAACAG	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr3_-_116126932_116126949	0.310487	GUAACAG	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr3_-_65940346_65940359	0.309357	GUAACAG	AB085189|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AK013398|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_028357|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chrX_-_138825032_138825081	0.30881	GUAACAG	AK054387|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_001033600|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_019477|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_207625|Acsl4|50790|acyl-CoA synthetase long-chain family member 4
mm9_v1_chr8_+_13869640_13869740	0.296864	GUAACAG	NM_181854|Zfp828|101994|zinc finger protein 828	AK132164|Zfp828|101994|zinc finger protein 828	AK170835|Zfp828|101994|zinc finger protein 828	AK139963|Zfp828|101994|zinc finger protein 828	AK133990|Zfp828|101994|zinc finger protein 828	BC028991|Zfp828|101994|zinc finger protein 828	AK129444|Zfp828|101994|zinc finger protein 828
mm9_v1_chr2_-_156005873_156005985	0.291172	GUAACAG	AY061882|Rbm39|170791|RNA binding motif protein 39	BC023205|Rbm39|170791|RNA binding motif protein 39	AK156737|Rbm39|170791|RNA binding motif protein 39	AK009719|Rbm39|170791|RNA binding motif protein 39	BC086645|Rbm39|170791|RNA binding motif protein 39	AK154989|Rbm39|170791|RNA binding motif protein 39	AK147076|Rbm39|170791|RNA binding motif protein 39	AK167355|Rbm39|170791|RNA binding motif protein 39	AK005227|Rbm39|170791|RNA binding motif protein 39	AK005234|Rbm39|170791|RNA binding motif protein 39	AK155976|Rbm39|170791|RNA binding motif protein 39	NM_133242|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr2_-_180655611_180655736	0.290745	GUAACAG	BC061479|Ythdf1|228994|YTH domain family 1	AK172582|Ythdf1|228994|YTH domain family 1	AK075846|Ythdf1|228994|YTH domain family 1	BC065050|Ythdf1|228994|YTH domain family 1	NM_173761|Ythdf1|228994|YTH domain family 1	AK033241|Ythdf1|228994|YTH domain family 1	AK046768|Ythdf1|228994|YTH domain family 1
mm9_v1_chr7_-_141416778_141416785	0.289187	GUAACAG	D50411|Adam12|11489|a disintegrin and metallopeptidase domain 12 (meltrin alpha)	NM_007400|Adam12|11489|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm9_v1_chr13_+_55694491_55694540	0.287552	GUAACAG	NM_026211|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK012474|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK152496|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK152581|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK153383|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK010259|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK169001|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	BC049282|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	BC058801|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	BC004691|Tmed9|67511|transmembrane emp24 protein transport domain containing 9
mm9_v1_chr11_+_87881747_87881842	0.286826	GUAACAG	AF104410|Vezf1|22344|vascular endothelial zinc finger 1	NM_016686|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr9_+_118515769_118515921	0.281486	GUAACAG	AJ344342|Itga9|104099|integrin alpha 9	NM_133721|Itga9|104099|integrin alpha 9	BC150824|Itga9|104099|integrin alpha 9
mm9_v1_chr17_-_10512217_10512250	0.281273	GUAACAG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr19_+_47654508_47654642	0.279439	GUAACAG	AF039574|Slk|20874|STE20-like kinase (yeast)	NM_001164639|Slk|20874|STE20-like kinase (yeast)	NM_009289|Slk|20874|STE20-like kinase (yeast)	BC131674|Slk|20874|STE20-like kinase (yeast)	BC131675|Slk|20874|STE20-like kinase (yeast)	AF112855|Slk|20874|STE20-like kinase (yeast)	AK029491|Slk|20874|STE20-like kinase (yeast)
mm9_v1_chr5_-_123439064_123439107	0.277109	GUAACAG	BC065090|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK043352|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_001003953|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK136625|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr9_-_71440061_71440201	0.275043	GUAACAG	AK132167|Gcom1|102371|GRINL1A complex locus	AK146889|Gcom1|102371|GRINL1A complex locus	BC139077|Gcom1|102371|GRINL1A complex locus	BC139078|Gcom1|102371|GRINL1A complex locus	NM_001033208|Gcom1|102371|GRINL1A complex locus
mm9_v1_chr10_-_120748244_120748244	0.274397	GUAACAG	NM_029057|Tbc1d30|74694|TBC1 domain family, member 30
mm9_v1_chr7_-_34953455_34953570	0.26943	GUAACAG	AK178317|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK184258|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK189465|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK192304|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK194855|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK204958|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK213601|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK219234|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK219985|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK169168|Uba2|50995|ubiquitin-like modifier activating enzyme 2	U35833|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK163451|Uba2|50995|ubiquitin-like modifier activating enzyme 2	NM_016682|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK151765|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK152977|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK168673|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK164826|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK165321|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK152415|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr4_-_41045132_41045217	0.263084	GUAACAG	AB019039|Aqp3|11828|aquaporin 3	BC027400|Aqp3|11828|aquaporin 3	AF104416|Aqp3|11828|aquaporin 3	AK145678|Aqp3|11828|aquaporin 3	AK160929|Aqp3|11828|aquaporin 3	NM_016689|Aqp3|11828|aquaporin 3
mm9_v1_chr9_+_103014374_103014418	0.262895	GUAACAG	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr2_-_72817311_72817337	0.25342	GUAACAG	AK088238|Sp3|20687|trans-acting transcription factor 3	NM_001098425|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr13_-_47025086_47025155	0.250774	GUAACAG	AB037923|Kif13a|16553|kinesin family member 13A	NM_010617|Kif13a|16553|kinesin family member 13A
mm9_v1_chr1_+_52176281_52176465	0.248859	GUAACAG	AK039458|Stat1|20846|signal transducer and activator of transcription 1	NM_009283|Stat1|20846|signal transducer and activator of transcription 1	AK159887|Stat1|20846|signal transducer and activator of transcription 1	AK082706|Stat1|20846|signal transducer and activator of transcription 1	AK018544|Stat1|20846|signal transducer and activator of transcription 1	AK041599|Stat1|20846|signal transducer and activator of transcription 1	AK041814|Stat1|20846|signal transducer and activator of transcription 1	AK084855|Stat1|20846|signal transducer and activator of transcription 1	BC004808|Stat1|20846|signal transducer and activator of transcription 1	AK088874|Stat1|20846|signal transducer and activator of transcription 1	AK157458|Stat1|20846|signal transducer and activator of transcription 1	AK157263|Stat1|20846|signal transducer and activator of transcription 1	AK046517|Stat1|20846|signal transducer and activator of transcription 1
mm9_v1_chr19_-_28754566_28754608	0.242669	GUAACAG	AK054020|Glis3|226075|GLIS family zinc finger 3	DQ871027|Glis3|226075|GLIS family zinc finger 3	NM_175459|Glis3|226075|GLIS family zinc finger 3
mm9_v1_chr12_-_53072250_53072307	0.241832	GUAACAG	AK047221|Heatr5a|320487|HEAT repeat containing 5A	AK080280|Heatr5a|320487|HEAT repeat containing 5A	AK053055|Heatr5a|320487|HEAT repeat containing 5A	NM_177171|Heatr5a|320487|HEAT repeat containing 5A
mm9_v1_chr5_-_51945054_51945159	0.23232	GUAACAG	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr10_-_121063321_121063512	0.231592	GUAACAG	NM_001081056|Xpot|73192|exportin, tRNA (nuclear export receptor for tRNAs)
mm9_v1_chr11_-_120852609_120852649	0.216479	GUAACAG	BC004604|Csnk1d|104318|casein kinase 1, delta	AK146600|Csnk1d|104318|casein kinase 1, delta	AK051052|Csnk1d|104318|casein kinase 1, delta	NM_027874|Csnk1d|104318|casein kinase 1, delta	NM_139059|Csnk1d|104318|casein kinase 1, delta
mm9_v1_chr1_+_193730645_193730708	0.215697	GUAACAG	AK145100|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	NM_009579|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	BC052166|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1
mm9_v1_chr5_+_135625533_135625593	0.213863	GUAACAG	AK088198|Tbl2|27368|transducin (beta)-like 2	AK132366|Tbl2|27368|transducin (beta)-like 2	BC039273|Tbl2|27368|transducin (beta)-like 2	AK010899|Tbl2|27368|transducin (beta)-like 2	AK165686|Tbl2|27368|transducin (beta)-like 2	BC048185|Tbl2|27368|transducin (beta)-like 2	NM_013763|Tbl2|27368|transducin (beta)-like 2	AF097523|Tbl2|27368|transducin (beta)-like 2
mm9_v1_chr5_-_123350242_123350397	0.210165	GUAACAG	AK031626|Kdm2b|30841|lysine (K)-specific demethylase 2B	BC057622|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_013910|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr6_-_71773747_71773805	0.208876	GUAACAG	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr16_+_32608981_32609106	0.208233	GUAACAG	NM_011638|Tfrc|22042|transferrin receptor	AK048228|Tfrc|22042|transferrin receptor	AK088961|Tfrc|22042|transferrin receptor	BC054522|Tfrc|22042|transferrin receptor
mm9_v1_chr1_+_92949986_92950162	0.206814	GUAACAG	AK077637|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_001111311|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_008515|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK134120|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK133661|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AF045573|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144955|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144956|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC145642|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr3_-_148617598_148617598	0.197896	GUAACAG	NM_001081298|Lphn2|99633|latrophilin 2
mm9_v1_chr1_-_140071818_140071883	0.192208	GUAACAG	BC131655|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK088215|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	BC028512|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	M14342|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK154893|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK171802|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	AK054056|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_001111316|Ptprc|19264|protein tyrosine phosphatase, receptor type, C	NM_011210|Ptprc|19264|protein tyrosine phosphatase, receptor type, C
mm9_v1_chr19_+_57435498_57435553	0.191123	GUAACAG	NM_145505|Fam160b1|226252|family with sequence similarity 160, member B1	AK046518|Fam160b1|226252|family with sequence similarity 160, member B1	AK147386|Fam160b1|226252|family with sequence similarity 160, member B1	AK172373|Fam160b1|226252|family with sequence similarity 160, member B1	AK054539|Fam160b1|226252|family with sequence similarity 160, member B1
mm9_v1_chr5_-_123438517_123438541	0.189445	GUAACAG	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr3_+_84668066_84668066	0.188555	GUAACAG	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr7_+_19679892_19679978	0.188375	GUAACAG	NM_011383|Six5|20475|sine oculis-related homeobox 5 homolog (Drosophila)
mm9_v1_chr15_+_80629020_80629144	0.187518	GUAACAG	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr14_-_100548982_100549014	0.186908	GUAACAG	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr16_+_33185137_33185252	0.180417	GUAACAG	BC035278|Osbpl11|106326|oxysterol binding protein-like 11	NM_176840|Osbpl11|106326|oxysterol binding protein-like 11	BC099400|Osbpl11|106326|oxysterol binding protein-like 11
mm9_v1_chrX_+_82819294_82819360	0.177039	GUAACAG	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr9_+_7184513_7184587	0.176085	GUAACAG	AK134862|Dcun1d5|76863|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	AK014737|Dcun1d5|76863|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	BC020048|Dcun1d5|76863|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	AK013933|Dcun1d5|76863|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	AK012764|Dcun1d5|76863|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	BC020089|Dcun1d5|76863|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	NM_029775|Dcun1d5|76863|DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)
mm9_v1_chrX_+_98572571_98572682	0.174501	GUAACAG	BC026833|Gjb1|14618|gap junction protein, beta 1	NM_008124|Gjb1|14618|gap junction protein, beta 1
mm9_v1_chr11_-_82704059_82704118	0.172551	GUAACAG	AK036272|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB007040|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052828|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052829|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052830|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052831|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052832|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052833|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052834|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	BC049136|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK147759|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AF034955|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627687|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627688|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	Y15570|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK017835|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK138553|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	NM_011235|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)
mm9_v1_chr15_+_38837818_38837834	0.170831	GUAACAG	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr13_+_49436905_49436989	0.164455	GUAACAG	NM_001039179|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	NM_001039180|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	NM_029791|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AK122348|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AK171300|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AK156407|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	AJ250106|Bicd2|76895|bicaudal D homolog 2 (Drosophila)	BC032198|Bicd2|76895|bicaudal D homolog 2 (Drosophila)
mm9_v1_chr9_+_35018704_35018857	0.149871	GUAACAG	AK007516|Srpr|67398|signal recognition particle receptor ('docking protein')	AK004967|Srpr|67398|signal recognition particle receptor ('docking protein')	NM_026130|Srpr|67398|signal recognition particle receptor ('docking protein')	AK038017|Srpr|67398|signal recognition particle receptor ('docking protein')	BC021839|Srpr|67398|signal recognition particle receptor ('docking protein')
mm9_v1_chr10_+_7400978_7401034	0.148325	GUAACAG	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chr14_+_65977510_65977519	0.145626	GUAACAG	AK155538|Zfp395|380912|zinc finger protein 395	NM_199029|Zfp395|380912|zinc finger protein 395
mm9_v1_chr4_-_45421590_45421646	0.144837	GUAACAG	AK150362|Mcart1|230125|mitochondrial carrier triple repeat 1	AK151688|Mcart1|230125|mitochondrial carrier triple repeat 1	AK152171|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156168|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156342|Mcart1|230125|mitochondrial carrier triple repeat 1	AK146788|Mcart1|230125|mitochondrial carrier triple repeat 1	AK020275|Mcart1|230125|mitochondrial carrier triple repeat 1	AK164726|Mcart1|230125|mitochondrial carrier triple repeat 1	AK172225|Mcart1|230125|mitochondrial carrier triple repeat 1	AK051139|Mcart1|230125|mitochondrial carrier triple repeat 1	AK165253|Mcart1|230125|mitochondrial carrier triple repeat 1	NM_001009949|Mcart1|230125|mitochondrial carrier triple repeat 1
mm9_v1_chr9_+_70390659_70390695	0.142002	GUAACAG	AK017715|Sltm|66660|SAFB-like, transcription modulator	AF462146|Sltm|66660|SAFB-like, transcription modulator	NM_025690|Sltm|66660|SAFB-like, transcription modulator	BC139202|Sltm|66660|SAFB-like, transcription modulator	BC145577|Sltm|66660|SAFB-like, transcription modulator
mm9_v1_chr18_+_10325174_10325177	0.141462	GUAACAG	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr7_-_117129702_117129846	0.132279	GUAACAG	AK038953|Tmem41b|233724|transmembrane protein 41B	AK165226|Tmem41b|233724|transmembrane protein 41B	AK075726|Tmem41b|233724|transmembrane protein 41B	AK029327|Tmem41b|233724|transmembrane protein 41B	AK053588|Tmem41b|233724|transmembrane protein 41B	AK078357|Tmem41b|233724|transmembrane protein 41B	AK090100|Tmem41b|233724|transmembrane protein 41B	AK139961|Tmem41b|233724|transmembrane protein 41B	AK166427|Tmem41b|233724|transmembrane protein 41B	AK166455|Tmem41b|233724|transmembrane protein 41B	NM_153525|Tmem41b|233724|transmembrane protein 41B	BC027103|Tmem41b|233724|transmembrane protein 41B	AK172876|Tmem41b|233724|transmembrane protein 41B	BC026515|Tmem41b|233724|transmembrane protein 41B	AK033997|Tmem41b|233724|transmembrane protein 41B	AK035266|Tmem41b|233724|transmembrane protein 41B	AK162557|Tmem41b|233724|transmembrane protein 41B	AK150353|Tmem41b|233724|transmembrane protein 41B	AK153048|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr2_+_173902521_173902654	0.122336	GUAACAG	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr11_+_59761707_59761771	0.119953	GUAACAG	NM_138675|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)	AK147123|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)	BC019367|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)	AF467888|Med9|192191|mediator of RNA polymerase II transcription, subunit 9 homolog (yeast)
mm9_v1_chr4_+_41296028_41296100	0.115314	GUAACAG	NM_023305|Ubap1|67123|ubiquitin-associated protein 1	AK009596|Ubap1|67123|ubiquitin-associated protein 1	AK076078|Ubap1|67123|ubiquitin-associated protein 1	AK028477|Ubap1|67123|ubiquitin-associated protein 1	AK163229|Ubap1|67123|ubiquitin-associated protein 1	AK033121|Ubap1|67123|ubiquitin-associated protein 1	AK028670|Ubap1|67123|ubiquitin-associated protein 1	BC065996|Ubap1|67123|ubiquitin-associated protein 1	AF275549|Ubap1|67123|ubiquitin-associated protein 1	AK030370|Ubap1|67123|ubiquitin-associated protein 1
mm9_v1_chr15_+_87455659_87455659	0.112148	GUAACAG	AY325124|Fam19a5|106014|family with sequence similarity 19, member A5	BC015306|Fam19a5|106014|family with sequence similarity 19, member A5	NM_134096|Fam19a5|106014|family with sequence similarity 19, member A5
mm9_v1_chr11_+_101177524_101177765	0.11141	GUAACAG	AK140597|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK150939|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK171348|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	NM_011192|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC015255|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK156079|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC139818|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	D87911|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK178475|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK179381|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK180194|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	CT010198|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	U60330|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3
mm9_v1_chr7_+_119902897_119902956	0.110851	GUAACAG	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chrX_-_71330931_71331012	0.109738	GUAACAG	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr4_+_63205780_63205910	0.104586	GUAACAG	NM_024173|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK081611|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK007596|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK010131|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK168972|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK169079|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK088712|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	BC003429|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK003563|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK152699|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AK159558|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	AB076406|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1	BC088836|Atp6v1g1|66290|ATPase, H+ transporting, lysosomal V1 subunit G1
mm9_v1_chr2_-_20889276_20889347	0.103511	GUAACAG	BC150741|Arhgap21|71435|Rho GTPase activating protein 21	BC076629|Arhgap21|71435|Rho GTPase activating protein 21	NM_001081364|Arhgap21|71435|Rho GTPase activating protein 21	NM_001128084|Arhgap21|71435|Rho GTPase activating protein 21
mm9_v1_chr3_-_141645214_141645214	0.103005	GUAACAG	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr1_-_163061538_163061643	0.101728	GUAACAG	BC060183|Klhl20|226541|kelch-like 20 (Drosophila)	AK053102|Klhl20|226541|kelch-like 20 (Drosophila)	AK053371|Klhl20|226541|kelch-like 20 (Drosophila)	AK054169|Klhl20|226541|kelch-like 20 (Drosophila)	BC019571|Klhl20|226541|kelch-like 20 (Drosophila)	AK220547|Klhl20|226541|kelch-like 20 (Drosophila)	NM_001039482|Klhl20|226541|kelch-like 20 (Drosophila)
mm9_v1_chr3_-_108365340_108365435	0.099574	GUAACAG	NM_026198|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr11_-_3309227_3309253	0.0995517	GUAACAG	NM_010718|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr5_+_3803163_3803177	0.0972998	GUAACAG	NM_001170552|Krit1|79264|KRIT1, ankyrin repeat containing	NM_030675|Krit1|79264|KRIT1, ankyrin repeat containing
mm9_v1_chr8_-_98412220_98412268	0.0948859	GUAACAG	U82470|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	J02622|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	NM_010325|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial
mm9_v1_chr5_+_108697913_108698008	0.0945051	GUAACAG	AK075713|Dr1|13486|down-regulator of transcription 1	NM_026106|Dr1|13486|down-regulator of transcription 1	AK144749|Dr1|13486|down-regulator of transcription 1	AK007230|Dr1|13486|down-regulator of transcription 1	AK090113|Dr1|13486|down-regulator of transcription 1	AK146573|Dr1|13486|down-regulator of transcription 1	AK031057|Dr1|13486|down-regulator of transcription 1	AK139866|Dr1|13486|down-regulator of transcription 1	AK018040|Dr1|13486|down-regulator of transcription 1
mm9_v1_chr6_+_120314116_120314182	0.0935721	GUAACAG	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr11_-_100711785_100712037	0.0835347	GUAACAG	Z48539|Stat5b|20851|signal transducer and activator of transcription 5B	BC024319|Stat5b|20851|signal transducer and activator of transcription 5B	AK154664|Stat5b|20851|signal transducer and activator of transcription 5B	AK150098|Stat5b|20851|signal transducer and activator of transcription 5B	NM_001113563|Stat5b|20851|signal transducer and activator of transcription 5B	AK045531|Stat5b|20851|signal transducer and activator of transcription 5B
mm9_v1_chr15_-_86016336_86016570	0.0784469	GUAACAG	AK052269|Cerk|223753|ceramide kinase	BC094253|Cerk|223753|ceramide kinase	NM_145475|Cerk|223753|ceramide kinase
mm9_v1_chr6_+_115803545_115803666	0.0780702	GUAACAG	NM_001167763|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	NM_031177|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK044456|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK167330|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK167412|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC060621|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK131115|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC066083|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	BC067415|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)	AK031308|Ift122|81896|intraflagellar transport 122 homolog (Chlamydomonas)
mm9_v1_chr1_+_78654399_78654472	0.0748157	GUAACAG	AK161708|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001001981|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)	NM_001033606|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_001136222|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	NM_028817|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK012088|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK160839|Acsl3|74205|acyl-CoA synthetase long-chain family member 3	AK166723|Acsl3|74205|acyl-CoA synthetase long-chain family member 3
mm9_v1_chr10_-_94878845_94878845	0.0674059	GUAACAG	NM_001168655|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr18_-_77952721_77952748	0.0669269	GUAACAG	AK046785|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK033209|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK163840|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_178670|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr3_-_51129908_51129958	0.0655829	GUAACAG	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr5_+_102910409_102910555	0.0618941	GUAACAG	AK080986|Arhgap24|231532|Rho GTPase activating protein 24	NM_029270|Arhgap24|231532|Rho GTPase activating protein 24	NM_146161|Arhgap24|231532|Rho GTPase activating protein 24	AK052395|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr13_-_58229884_58229966	0.0588513	GUAACAG	NM_029872|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr4_+_138748812_138748922	0.0501754	GUAACAG	AK159390|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK160082|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK156778|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_009798|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	BC002053|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153367|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153394|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK168738|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_001037761|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10406|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10407|Capzb|12345|capping protein (actin filament) muscle Z-line, beta
mm9_v1_chr6_+_8459595_8459595	0.0449978	GUAACAG	NM_133236|Glcci1|170772|glucocorticoid induced transcript 1
mm9_v1_chr10_+_20032269_20032343	0.0441185	GUAACAG	NM_001025392|Bclaf1|72567|BCL2-associated transcription factor 1	NM_001025393|Bclaf1|72567|BCL2-associated transcription factor 1	NM_153787|Bclaf1|72567|BCL2-associated transcription factor 1	AK161692|Bclaf1|72567|BCL2-associated transcription factor 1	BC086624|Bclaf1|72567|BCL2-associated transcription factor 1	AK162896|Bclaf1|72567|BCL2-associated transcription factor 1	AK141834|Bclaf1|72567|BCL2-associated transcription factor 1	AK149724|Bclaf1|72567|BCL2-associated transcription factor 1	AK150017|Bclaf1|72567|BCL2-associated transcription factor 1	AK088741|Bclaf1|72567|BCL2-associated transcription factor 1	AK011802|Bclaf1|72567|BCL2-associated transcription factor 1	BC028963|Bclaf1|72567|BCL2-associated transcription factor 1	BC034300|Bclaf1|72567|BCL2-associated transcription factor 1	BC029682|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr17_+_4995073_4995073	0.0334314	GUAACAG	NM_001085355|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr1_-_16609325_16609423	0.0317163	GUAACAG	AK077997|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	BC020124|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK082233|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	NM_025773|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK042870|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK044463|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050679|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK015348|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK046086|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050923|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)
mm9_v1_chr7_-_53355395_53355639	0.0261957	GUAACAG	D50581|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	U73626|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	BC052731|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	BC057006|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11	NM_010602|Kcnj11|16514|potassium inwardly rectifying channel, subfamily J, member 11
mm9_v1_chr12_+_60232417_60232447	0.0250531	GUAACAG	AK157358|Ctage5|217615|CTAGE family, member 5	NM_001165253|Ctage5|217615|CTAGE family, member 5
mm9_v1_chr6_+_91423694_91423779	0.0210329	GUAACAG	AK050173|Tmem43|74122|transmembrane protein 43	AK151766|Tmem43|74122|transmembrane protein 43	AK168559|Tmem43|74122|transmembrane protein 43	AK004778|Tmem43|74122|transmembrane protein 43	NM_028766|Tmem43|74122|transmembrane protein 43	AK151693|Tmem43|74122|transmembrane protein 43	AK152078|Tmem43|74122|transmembrane protein 43	BC024933|Tmem43|74122|transmembrane protein 43	AK037165|Tmem43|74122|transmembrane protein 43	BC005521|Tmem43|74122|transmembrane protein 43
mm9_v1_chr14_-_49686341_49686379	0.019657	GUAACAG	NM_207214|Exoc5|105504|exocyst complex component 5
mm9_v1_chr9_-_67407509_67407509	0.0180765	GUAACAG	NM_001081242|Tln2|70549|talin 2
mm9_v1_chr9_+_56266618_56266679	0.00976836	GUAACAG	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr1_+_185858324_185858355	0.00932155	GUAACAG	BC025066|Dusp10|63953|dual specificity phosphatase 10	AB037908|Dusp10|63953|dual specificity phosphatase 10	AK142568|Dusp10|63953|dual specificity phosphatase 10	AK088186|Dusp10|63953|dual specificity phosphatase 10	NM_022019|Dusp10|63953|dual specificity phosphatase 10	AK035293|Dusp10|63953|dual specificity phosphatase 10	AK050528|Dusp10|63953|dual specificity phosphatase 10	AK088357|Dusp10|63953|dual specificity phosphatase 10	AK088024|Dusp10|63953|dual specificity phosphatase 10	AK011995|Dusp10|63953|dual specificity phosphatase 10
