mm9_v1_chr12_+_3891743_3891823	6.96143	AACAGUC	AF480164|Dnmt3a|13435|DNA methyltransferase 3A	NM_153743|Dnmt3a|13435|DNA methyltransferase 3A	AK157792|Dnmt3a|13435|DNA methyltransferase 3A	AK077792|Dnmt3a|13435|DNA methyltransferase 3A	AK136170|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr18_-_72510670_72510722	3.06303	AACAGUC	AK157715|Dcc|13176|deleted in colorectal carcinoma	AK090377|Dcc|13176|deleted in colorectal carcinoma	NM_007831|Dcc|13176|deleted in colorectal carcinoma
mm9_v1_chr18_-_33623668_33623692	2.97163	AACAGUC	NM_001109988|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr12_-_28027541_28027588	2.95064	AACAGUC	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr1_-_135975681_135975731	2.39206	AACAGUC	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr2_-_65405546_65405588	2.15212	AACAGUC	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr2_-_44968728_44968798	2.09197	AACAGUC	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr19_+_21852816_21852904	2.09066	AACAGUC	NM_001033759|Tmem2|83921|transmembrane protein 2	NM_031997|Tmem2|83921|transmembrane protein 2	AK172599|Tmem2|83921|transmembrane protein 2	BC089353|Tmem2|83921|transmembrane protein 2	AK149667|Tmem2|83921|transmembrane protein 2	AK172691|Tmem2|83921|transmembrane protein 2	AK149803|Tmem2|83921|transmembrane protein 2	AK156343|Tmem2|83921|transmembrane protein 2
mm9_v1_chr17_+_15841889_15842002	1.7916	AACAGUC	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr1_-_12980994_12981257	1.78924	AACAGUC	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr5_+_130371592_130371637	1.63316	AACAGUC	AK010551|Scand3|71970|SCAN domain containing 3	NM_183088|Scand3|71970|SCAN domain containing 3	BC137610|Scand3|71970|SCAN domain containing 3
mm9_v1_chr6_-_112897259_112897274	1.5776	AACAGUC	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr2_-_51004604_51004631	1.57086	AACAGUC	BC009002|Rnd3|74194|Rho family GTPase 3	AK035195|Rnd3|74194|Rho family GTPase 3	AK048635|Rnd3|74194|Rho family GTPase 3	AK011442|Rnd3|74194|Rho family GTPase 3	NM_028810|Rnd3|74194|Rho family GTPase 3
mm9_v1_chr13_-_117099629_117099895	1.55567	AACAGUC	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr4_+_13670425_13670448	1.53523	AACAGUC	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr7_-_52384104_52384149	1.49282	AACAGUC	AK007609|Rpl13a|22121|ribosomal protein L13A	AK170030|Rpl13a|22121|ribosomal protein L13A	NM_009438|Rpl13a|22121|ribosomal protein L13A	AK077512|Rpl13a|22121|ribosomal protein L13A	AK146318|Rpl13a|22121|ribosomal protein L13A	AK156035|Rpl13a|22121|ribosomal protein L13A	AK159882|Rpl13a|22121|ribosomal protein L13A	AK168784|Rpl13a|22121|ribosomal protein L13A	AK168903|Rpl13a|22121|ribosomal protein L13A	BC086896|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr4_+_48598013_48598089	1.4913	AACAGUC	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr12_+_72932064_72932126	1.48157	AACAGUC	BC076585|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_026102|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_172464|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK129185|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK165335|Daam1|208846|dishevelled associated activator of morphogenesis 1	BC038403|Daam1|208846|dishevelled associated activator of morphogenesis 1
mm9_v1_chr18_+_83080270_83080270	1.45763	AACAGUC	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr6_+_15135505_15135508	1.45126	AACAGUC	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr6_-_98978185_98978383	1.44775	AACAGUC	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr3_-_119486305_119486325	1.40914	AACAGUC	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr6_-_92431385_92431385	1.32358	AACAGUC	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr3_+_37538808_37538883	1.31053	AACAGUC	BC053428|Spry1|24063|sprouty homolog 1 (Drosophila)	NM_011896|Spry1|24063|sprouty homolog 1 (Drosophila)	AK014578|Spry1|24063|sprouty homolog 1 (Drosophila)	AK140405|Spry1|24063|sprouty homolog 1 (Drosophila)	BC039139|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr13_+_89680240_89680277	1.27483	AACAGUC	AK032750|Hapln1|12950|hyaluronan and proteoglycan link protein 1	NM_013500|Hapln1|12950|hyaluronan and proteoglycan link protein 1
mm9_v1_chr13_+_98011057_98011069	1.25117	AACAGUC	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr6_+_30688050_30688066	1.24266	AACAGUC	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr19_-_28085534_28085655	1.23668	AACAGUC	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr13_-_108680257_108680267	1.23166	AACAGUC	NM_145456|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chrX_+_12648604_12648673	1.22269	AACAGUC	AK049283|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	NM_009481|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	AK028443|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	DQ086491|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	U67874|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome
mm9_v1_chr3_+_88336316_88336316	1.21952	AACAGUC	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr10_-_67741461_67741487	1.21653	AACAGUC	AK029818|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK031596|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK017396|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	NM_023598|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AF280065|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)
mm9_v1_chr12_-_85559793_85559836	1.21118	AACAGUC	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr2_-_153067043_153067211	1.19984	AACAGUC	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr2_-_131178551_131178627	1.18111	AACAGUC	BC096529|Rnf24|51902|ring finger protein 24	AK154093|Rnf24|51902|ring finger protein 24	AK048813|Rnf24|51902|ring finger protein 24	AK015699|Rnf24|51902|ring finger protein 24	AK089207|Rnf24|51902|ring finger protein 24	AK083665|Rnf24|51902|ring finger protein 24	NM_178607|Rnf24|51902|ring finger protein 24
mm9_v1_chr18_-_33623400_33623430	1.10105	AACAGUC	NM_001109989|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr18_+_73732352_73732560	1.09757	AACAGUC	NM_001039214|Mex3c|240396|mex3 homolog C (C. elegans)	AK133686|Mex3c|240396|mex3 homolog C (C. elegans)
mm9_v1_chr19_-_24936327_24936331	1.07991	AACAGUC	AK035507|Pgm5|226041|phosphoglucomutase 5	NM_175013|Pgm5|226041|phosphoglucomutase 5
mm9_v1_chr2_-_103637096_103637239	1.04606	AACAGUC	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr19_+_37000568_37000661	0.996225	AACAGUC	NM_001080706|Btaf1|107182|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm9_v1_chr19_-_19185685_19185685	0.963233	AACAGUC	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr17_-_46419939_46419978	0.959043	AACAGUC	AK169889|Tjap1|74094|tight junction associated protein 1	AK164925|Tjap1|74094|tight junction associated protein 1	BC023316|Tjap1|74094|tight junction associated protein 1	AK002882|Tjap1|74094|tight junction associated protein 1	NM_028751|Tjap1|74094|tight junction associated protein 1
mm9_v1_chr18_+_35758269_35758376	0.945106	AACAGUC	AK146327|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK167545|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169207|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169411|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK154453|Paip2|67869|polyadenylate-binding protein-interacting protein 2	BC010190|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK150957|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK005462|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK009909|Paip2|67869|polyadenylate-binding protein-interacting protein 2	NM_026420|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr1_+_136456754_136456771	0.935998	AACAGUC	NM_152895|Kdm5b|75605|lysine (K)-specific demethylase 5B	AK220451|Kdm5b|75605|lysine (K)-specific demethylase 5B	AY082429|Kdm5b|75605|lysine (K)-specific demethylase 5B	AY082430|Kdm5b|75605|lysine (K)-specific demethylase 5B	BC048180|Kdm5b|75605|lysine (K)-specific demethylase 5B	BC057318|Kdm5b|75605|lysine (K)-specific demethylase 5B
mm9_v1_chr2_+_154959216_154959300	0.924393	AACAGUC	NM_008395|Itch|16396|itchy, E3 ubiquitin protein ligase	AK082003|Itch|16396|itchy, E3 ubiquitin protein ligase	AK163006|Itch|16396|itchy, E3 ubiquitin protein ligase	AK141800|Itch|16396|itchy, E3 ubiquitin protein ligase	AK037940|Itch|16396|itchy, E3 ubiquitin protein ligase	BC062934|Itch|16396|itchy, E3 ubiquitin protein ligase	AK020167|Itch|16396|itchy, E3 ubiquitin protein ligase	AK220164|Itch|16396|itchy, E3 ubiquitin protein ligase	AK048303|Itch|16396|itchy, E3 ubiquitin protein ligase	BC064678|Itch|16396|itchy, E3 ubiquitin protein ligase	AF037454|Itch|16396|itchy, E3 ubiquitin protein ligase
mm9_v1_chr10_-_116813919_116814033	0.912665	AACAGUC	AK048615|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK046856|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK168764|Cpsf6|432508|cleavage and polyadenylation specific factor 6	BC068133|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK049749|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK077684|Cpsf6|432508|cleavage and polyadenylation specific factor 6	NM_001013391|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr1_-_180267913_180267920	0.909145	AACAGUC	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr11_-_115375672_115375704	0.893847	AACAGUC	BC003758|Hn1|15374|hematological and neurological expressed sequence 1	NM_008258|Hn1|15374|hematological and neurological expressed sequence 1	U90123|Hn1|15374|hematological and neurological expressed sequence 1	AK167961|Hn1|15374|hematological and neurological expressed sequence 1	AK013122|Hn1|15374|hematological and neurological expressed sequence 1	AK004909|Hn1|15374|hematological and neurological expressed sequence 1	AK010057|Hn1|15374|hematological and neurological expressed sequence 1	AK159784|Hn1|15374|hematological and neurological expressed sequence 1	AK167466|Hn1|15374|hematological and neurological expressed sequence 1	AK168632|Hn1|15374|hematological and neurological expressed sequence 1	AK014212|Hn1|15374|hematological and neurological expressed sequence 1	AK152560|Hn1|15374|hematological and neurological expressed sequence 1	AK150410|Hn1|15374|hematological and neurological expressed sequence 1
mm9_v1_chr2_+_57090045_57090088	0.887921	AACAGUC	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr18_+_35931207_35931276	0.880336	AACAGUC	NM_019912|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK146659|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK160567|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK005355|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK139623|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	U62483|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2	AK136197|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr4_+_13678443_13678575	0.877144	AACAGUC	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr2_+_154262114_154262265	0.87075	AACAGUC	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr14_-_98568744_98568810	0.812248	AACAGUC	AF129510|Dach1|13134|dachshund 1 (Drosophila)	BC052005|Dach1|13134|dachshund 1 (Drosophila)	BC059934|Dach1|13134|dachshund 1 (Drosophila)	NM_001038610|Dach1|13134|dachshund 1 (Drosophila)	NM_007826|Dach1|13134|dachshund 1 (Drosophila)
mm9_v1_chr5_-_135870365_135870452	0.799705	AACAGUC	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr4_-_109960078_109960115	0.798174	AACAGUC	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr12_-_15823590_15823683	0.769516	AACAGUC	NM_144551|Trib2|217410|tribbles homolog 2 (Drosophila)	AK144192|Trib2|217410|tribbles homolog 2 (Drosophila)
mm9_v1_chr5_+_145016060_145016213	0.768368	AACAGUC	AK049027|Bri3|55950|brain protein I3	NM_018772|Bri3|55950|brain protein I3	AK080467|Bri3|55950|brain protein I3	BC005677|Bri3|55950|brain protein I3	BC095955|Bri3|55950|brain protein I3	BC021149|Bri3|55950|brain protein I3	AF106967|Bri3|55950|brain protein I3
mm9_v1_chr1_+_174078145_174078245	0.741525	AACAGUC	NM_153555|Dcaf8|98193|DDB1 and CUL4 associated factor 8	BC023704|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK146825|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK164799|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK047316|Dcaf8|98193|DDB1 and CUL4 associated factor 8
mm9_v1_chr2_+_4802609_4802674	0.737353	AACAGUC	BC066037|Sephs1|109079|selenophosphate synthetase 1	NM_175400|Sephs1|109079|selenophosphate synthetase 1	BC065165|Sephs1|109079|selenophosphate synthetase 1	AK044971|Sephs1|109079|selenophosphate synthetase 1
mm9_v1_chr3_+_19088109_19088272	0.731828	AACAGUC	DQ369744|Mtfr1|67472|mitochondrial fission regulator 1	AK075992|Mtfr1|67472|mitochondrial fission regulator 1	AK018048|Mtfr1|67472|mitochondrial fission regulator 1	AK004846|Mtfr1|67472|mitochondrial fission regulator 1	NM_026182|Mtfr1|67472|mitochondrial fission regulator 1	AK075822|Mtfr1|67472|mitochondrial fission regulator 1	AK009195|Mtfr1|67472|mitochondrial fission regulator 1	AK134822|Mtfr1|67472|mitochondrial fission regulator 1	BC019971|Mtfr1|67472|mitochondrial fission regulator 1
mm9_v1_chr13_-_3917356_3917465	0.698758	AACAGUC	AF094520|Net1|56349|neuroepithelial cell transforming gene 1	AK077728|Net1|56349|neuroepithelial cell transforming gene 1	NM_019671|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr2_-_33286793_33286890	0.689142	AACAGUC	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr16_+_38089086_38089192	0.665969	AACAGUC	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr5_+_45911467_45911626	0.65529	AACAGUC	NM_025895|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK007855|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AF318060|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK154249|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	BC024941|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK003854|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK005681|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)	AK201969|Med28|66999|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)
mm9_v1_chr3_-_19211000_19211321	0.652124	AACAGUC	AY007702|Pde7a|18583|phosphodiesterase 7A	AK154521|Pde7a|18583|phosphodiesterase 7A	BC062909|Pde7a|18583|phosphodiesterase 7A	NM_001122759|Pde7a|18583|phosphodiesterase 7A
mm9_v1_chr9_+_120842517_120842608	0.609568	AACAGUC	NM_007614|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK132398|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AY751549|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	BC048153|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	BC053065|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK020013|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK035311|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK133656|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	AK018515|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr11_+_103635438_103635563	0.599789	AACAGUC	AK132516|Wnt3|22415|wingless-related MMTV integration site 3	NM_009521|Wnt3|22415|wingless-related MMTV integration site 3	M32502|Wnt3|22415|wingless-related MMTV integration site 3	BC152305|Wnt3|22415|wingless-related MMTV integration site 3	BC152537|Wnt3|22415|wingless-related MMTV integration site 3	BC152304|Wnt3|22415|wingless-related MMTV integration site 3	AK141154|Wnt3|22415|wingless-related MMTV integration site 3	BC141271|Wnt3|22415|wingless-related MMTV integration site 3	BC141274|Wnt3|22415|wingless-related MMTV integration site 3
mm9_v1_chr7_+_119822831_119822885	0.592369	AACAGUC	S74227|Tead1|21676|TEA domain family member 1	AK140307|Tead1|21676|TEA domain family member 1	NM_001166584|Tead1|21676|TEA domain family member 1	NM_009346|Tead1|21676|TEA domain family member 1	AK148375|Tead1|21676|TEA domain family member 1
mm9_v1_chr1_-_99992145_99992228	0.587648	AACAGUC	AK051649|Pam|18484|peptidylglycine alpha-amidating monooxygenase	NM_013626|Pam|18484|peptidylglycine alpha-amidating monooxygenase	AK141291|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr10_+_17443024_17443226	0.585845	AACAGUC	AK131664|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	AK133791|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	NM_010828|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	BC057126|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	U86445|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	Y15163|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm9_v1_chr19_-_29880498_29880498	0.576843	AACAGUC	AK051413|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene	NM_172836|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene
mm9_v1_chr8_+_77517536_77517607	0.568889	AACAGUC	AK156670|Hmgxb4|70823|HMG box domain containing 4	AK014640|Hmgxb4|70823|HMG box domain containing 4	BC048188|Hmgxb4|70823|HMG box domain containing 4	BC049800|Hmgxb4|70823|HMG box domain containing 4	NM_178017|Hmgxb4|70823|HMG box domain containing 4	BC023721|Hmgxb4|70823|HMG box domain containing 4
mm9_v1_chr17_+_4995073_4995073	0.56016	AACAGUC	NM_001085355|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr11_+_50191220_50191290	0.557067	AACAGUC	NM_021510|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC016459|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK052983|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK088169|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	Y14196|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC042187|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC056224|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1
mm9_v1_chr14_-_103746016_103746030	0.529062	AACAGUC	AK149225|Mycbp2|105689|MYC binding protein 2	NM_207215|Mycbp2|105689|MYC binding protein 2	AK048441|Mycbp2|105689|MYC binding protein 2	AK081652|Mycbp2|105689|MYC binding protein 2
mm9_v1_chr10_+_52410306_52410508	0.518365	AACAGUC	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr10_-_120416369_120416397	0.517194	AACAGUC	AF112300|Lemd3|380664|LEM domain containing 3	NM_001081193|Lemd3|380664|LEM domain containing 3
mm9_v1_chr12_+_107022903_107023027	0.517064	AACAGUC	NM_011112|Papola|18789|poly (A) polymerase alpha	AK028940|Papola|18789|poly (A) polymerase alpha	AK090096|Papola|18789|poly (A) polymerase alpha	AK132704|Papola|18789|poly (A) polymerase alpha	AK134552|Papola|18789|poly (A) polymerase alpha	BC060128|Papola|18789|poly (A) polymerase alpha	U58134|Papola|18789|poly (A) polymerase alpha	U52197|Papola|18789|poly (A) polymerase alpha
mm9_v1_chr2_-_52414072_52414117	0.514095	AACAGUC	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr17_+_78599556_78599594	0.506407	AACAGUC	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr8_-_106966899_106966946	0.497326	AACAGUC	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr11_+_80196766_80196898	0.488279	AACAGUC	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr12_-_85534964_85534979	0.481971	AACAGUC	AK155547|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK171272|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163502|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK081554|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr1_+_140860285_140860402	0.479342	AACAGUC	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr15_-_96529998_96530181	0.454778	AACAGUC	BC041108|Slc38a2|67760|solute carrier family 38, member 2	BC027259|Slc38a2|67760|solute carrier family 38, member 2	AK129342|Slc38a2|67760|solute carrier family 38, member 2	BC048178|Slc38a2|67760|solute carrier family 38, member 2	NM_175121|Slc38a2|67760|solute carrier family 38, member 2	AK017145|Slc38a2|67760|solute carrier family 38, member 2	AK030917|Slc38a2|67760|solute carrier family 38, member 2	AK031615|Slc38a2|67760|solute carrier family 38, member 2	AK047403|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr4_-_34830178_34830200	0.438804	AACAGUC	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr2_+_65683823_65683911	0.435215	AACAGUC	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr13_+_88961034_88961117	0.430593	AACAGUC	AF031525|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK046885|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_001037987|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	NM_010103|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK157810|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK141907|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK135220|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK139093|Edil3|13612|EGF-like repeats and discoidin I-like domains 3	AK036117|Edil3|13612|EGF-like repeats and discoidin I-like domains 3
mm9_v1_chr8_-_92872139_92872206	0.425445	AACAGUC	AK082602|Tox3|244579|TOX high mobility group box family member 3	NM_172913|Tox3|244579|TOX high mobility group box family member 3
mm9_v1_chr6_-_92656148_92656177	0.424398	AACAGUC	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr5_+_108494692_108494781	0.421307	AACAGUC	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chr5_-_143668398_143668402	0.418977	AACAGUC	AK075973|Actb|11461|actin, beta	AK088691|Actb|11461|actin, beta	AK147787|Actb|11461|actin, beta	AK150662|Actb|11461|actin, beta	AK150675|Actb|11461|actin, beta	AK151010|Actb|11461|actin, beta	AK151145|Actb|11461|actin, beta	AK151166|Actb|11461|actin, beta	AK151226|Actb|11461|actin, beta	AK151277|Actb|11461|actin, beta	AK151350|Actb|11461|actin, beta	AK151386|Actb|11461|actin, beta	AK151468|Actb|11461|actin, beta	AK151898|Actb|11461|actin, beta	AK151956|Actb|11461|actin, beta	AK152052|Actb|11461|actin, beta	AK152433|Actb|11461|actin, beta	AK152470|Actb|11461|actin, beta	AK152844|Actb|11461|actin, beta	AK153461|Actb|11461|actin, beta	AK159834|Actb|11461|actin, beta	AK160029|Actb|11461|actin, beta	X03672|Actb|11461|actin, beta	AK152043|Actb|11461|actin, beta	AK150854|Actb|11461|actin, beta	AK150866|Actb|11461|actin, beta	AK151712|Actb|11461|actin, beta	AK152591|Actb|11461|actin, beta	AK159759|Actb|11461|actin, beta	NM_007393|Actb|11461|actin, beta
mm9_v1_chr15_+_81416643_81416789	0.41598	AACAGUC	NM_177821|Ep300|328572|E1A binding protein p300	AK042627|Ep300|328572|E1A binding protein p300	BC144976|Ep300|328572|E1A binding protein p300	BC150681|Ep300|328572|E1A binding protein p300
mm9_v1_chrX_-_91368713_91368747	0.403475	AACAGUC	L19714|Zfx|22764|zinc finger protein X-linked	AK145115|Zfx|22764|zinc finger protein X-linked	NM_001044386|Zfx|22764|zinc finger protein X-linked	NM_011768|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr12_-_47919695_47919761	0.403123	AACAGUC	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr9_-_59598416_59598455	0.400245	AACAGUC	BC037443|Senp8|71599|SUMO/sentrin specific peptidase 8	AK018606|Senp8|71599|SUMO/sentrin specific peptidase 8	AK029856|Senp8|71599|SUMO/sentrin specific peptidase 8	AK049120|Senp8|71599|SUMO/sentrin specific peptidase 8	AK136214|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172068|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172069|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172070|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172071|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_027838|Senp8|71599|SUMO/sentrin specific peptidase 8
mm9_v1_chr11_+_53138176_53138190	0.398923	AACAGUC	AK010803|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK027985|Zcchc10|67966|zinc finger, CCHC domain containing 10	BC025078|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK020177|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK169856|Zcchc10|67966|zinc finger, CCHC domain containing 10	BC087902|Zcchc10|67966|zinc finger, CCHC domain containing 10	NM_026479|Zcchc10|67966|zinc finger, CCHC domain containing 10
mm9_v1_chr1_-_51972816_51972829	0.396839	AACAGUC	NM_001161817|Myo1b|17912|myosin IB	NM_010863|Myo1b|17912|myosin IB
mm9_v1_chr5_+_73882264_73882364	0.378129	AACAGUC	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chrX_+_70884742_70884779	0.3772	AACAGUC	AK141667|Dusp9|75590|dual specificity phosphatase 9	AY316312|Dusp9|75590|dual specificity phosphatase 9	BC100309|Dusp9|75590|dual specificity phosphatase 9	NM_029352|Dusp9|75590|dual specificity phosphatase 9
mm9_v1_chr3_+_132754791_132754924	0.375525	AACAGUC	AK012829|Ints12|71793|integrator complex subunit 12	AK003874|Ints12|71793|integrator complex subunit 12	AK155162|Ints12|71793|integrator complex subunit 12	AK038713|Ints12|71793|integrator complex subunit 12	BC046996|Ints12|71793|integrator complex subunit 12	BC023801|Ints12|71793|integrator complex subunit 12	NM_027927|Ints12|71793|integrator complex subunit 12
mm9_v1_chr6_+_88148657_88148753	0.373242	AACAGUC	AK154981|Gata2|14461|GATA binding protein 2	NM_008090|Gata2|14461|GATA binding protein 2	AK004551|Gata2|14461|GATA binding protein 2	AK154792|Gata2|14461|GATA binding protein 2	BC107009|Gata2|14461|GATA binding protein 2
mm9_v1_chr11_-_78510874_78510941	0.373055	AACAGUC	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr9_+_118415358_118415568	0.371385	AACAGUC	AK161568|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AK172292|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC037641|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AF051357|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC003268|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC096467|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	NM_018748|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC023102|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC057561|Golga4|54214|golgi autoantigen, golgin subfamily a, 4
mm9_v1_chr6_-_13627853_13628000	0.367942	AACAGUC	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr3_+_151873407_151873495	0.367882	AACAGUC	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr9_+_113650560_113650629	0.364422	AACAGUC	AJ276961|Clasp2|76499|CLIP associating protein 2	NM_001114347|Clasp2|76499|CLIP associating protein 2	AK034560|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr11_-_74710562_74710581	0.362837	AACAGUC	BC058414|Sgsm2|97761|small G protein signaling modulator 2	BC060163|Sgsm2|97761|small G protein signaling modulator 2	NM_197943|Sgsm2|97761|small G protein signaling modulator 2
mm9_v1_chr6_-_72849854_72850037	0.356335	AACAGUC	NM_019715|Kcmf1|74287|potassium channel modulatory factor 1
mm9_v1_chr17_-_48548973_48549148	0.356082	AACAGUC	AK156487|Nfya|18044|nuclear transcription factor-Y alpha	BC029695|Nfya|18044|nuclear transcription factor-Y alpha	X55315|Nfya|18044|nuclear transcription factor-Y alpha	BC057099|Nfya|18044|nuclear transcription factor-Y alpha	AK137561|Nfya|18044|nuclear transcription factor-Y alpha	AK004729|Nfya|18044|nuclear transcription factor-Y alpha	AK143723|Nfya|18044|nuclear transcription factor-Y alpha	NM_001110832|Nfya|18044|nuclear transcription factor-Y alpha	NM_010913|Nfya|18044|nuclear transcription factor-Y alpha
mm9_v1_chr4_+_154865439_154865649	0.349588	AACAGUC	NM_001160016|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_001160017|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_008142|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK156101|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	BC013058|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK163844|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr13_+_42147389_42147402	0.349168	AACAGUC	AK039808|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1	NM_007772|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1
mm9_v1_chr14_-_47407948_47408042	0.342884	AACAGUC	AK154479|Cnih|12793|cornichon homolog (Drosophila)	AK152432|Cnih|12793|cornichon homolog (Drosophila)	AK168154|Cnih|12793|cornichon homolog (Drosophila)	AK011200|Cnih|12793|cornichon homolog (Drosophila)	BC034868|Cnih|12793|cornichon homolog (Drosophila)	AK002293|Cnih|12793|cornichon homolog (Drosophila)	AF022811|Cnih|12793|cornichon homolog (Drosophila)	NM_009919|Cnih|12793|cornichon homolog (Drosophila)
mm9_v1_chrX_+_90531783_90531984	0.339656	AACAGUC	AB006103|Arx|11878|aristaless related homeobox	BC052033|Arx|11878|aristaless related homeobox	NM_007492|Arx|11878|aristaless related homeobox
mm9_v1_chr15_+_96117952_96118007	0.338965	AACAGUC	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr15_+_58247016_58247063	0.325219	AACAGUC	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr1_-_174136874_174136913	0.324885	AACAGUC	NM_011063|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr17_+_8994520_8994643	0.323016	AACAGUC	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr5_+_118426774_118426787	0.3166	AACAGUC	AK049723|Fbxo21|231670|F-box protein 21	NM_145564|Fbxo21|231670|F-box protein 21	AK076521|Fbxo21|231670|F-box protein 21
mm9_v1_chr3_+_34548916_34548976	0.313167	AACAGUC	NM_011443|Sox2|20674|SRY-box containing gene 2	U31967|Sox2|20674|SRY-box containing gene 2
mm9_v1_chr12_-_84938095_84938119	0.307184	AACAGUC	AK170954|Zfyve1|217695|zinc finger, FYVE domain containing 1	NM_183154|Zfyve1|217695|zinc finger, FYVE domain containing 1	AK139825|Zfyve1|217695|zinc finger, FYVE domain containing 1
mm9_v1_chr4_-_133309484_133309525	0.303382	AACAGUC	NM_001080819|Arid1a|93760|AT rich interactive domain 1A (SWI-like)
mm9_v1_chrX_-_138825032_138825081	0.296219	AACAGUC	AK054387|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_001033600|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_019477|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_207625|Acsl4|50790|acyl-CoA synthetase long-chain family member 4
mm9_v1_chr3_+_61168428_61168660	0.295047	AACAGUC	NM_028712|Rap2b|74012|RAP2B, member of RAS oncogene family	AK045030|Rap2b|74012|RAP2B, member of RAS oncogene family	AK014462|Rap2b|74012|RAP2B, member of RAS oncogene family	AK042941|Rap2b|74012|RAP2B, member of RAS oncogene family	AK163186|Rap2b|74012|RAP2B, member of RAS oncogene family	AK150187|Rap2b|74012|RAP2B, member of RAS oncogene family	BC046528|Rap2b|74012|RAP2B, member of RAS oncogene family
mm9_v1_chr5_-_92512683_92512782	0.280333	AACAGUC	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr11_+_86940545_86940631	0.276999	AACAGUC	AK140822|Trim37|68729|tripartite motif-containing 37	BC058678|Trim37|68729|tripartite motif-containing 37	NM_197987|Trim37|68729|tripartite motif-containing 37	BC078416|Trim37|68729|tripartite motif-containing 37	BC059070|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr1_-_120207674_120207826	0.276877	AACAGUC	AK181409|Tsn|22099|translin	AK183078|Tsn|22099|translin	AK184665|Tsn|22099|translin	AK189586|Tsn|22099|translin	AK198107|Tsn|22099|translin	AK199692|Tsn|22099|translin	AK202525|Tsn|22099|translin	AK010737|Tsn|22099|translin	AF234179|Tsn|22099|translin	NM_011650|Tsn|22099|translin	X81464|Tsn|22099|translin	BC004615|Tsn|22099|translin	AK165598|Tsn|22099|translin	AK011220|Tsn|22099|translin	AK150529|Tsn|22099|translin	AK151448|Tsn|22099|translin
mm9_v1_chr5_-_23349880_23349980	0.273077	AACAGUC	AK008581|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	AK003864|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	BC055352|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	NM_025394|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm9_v1_chr4_+_135866879_135866952	0.270097	AACAGUC	AK152039|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK147043|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	BC038051|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	NM_028871|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK144682|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK141145|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK145849|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK133840|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK011307|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK144992|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	BC004679|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R
mm9_v1_chrX_-_71330931_71331012	0.268979	AACAGUC	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr12_-_55963776_55963890	0.267904	AACAGUC	AK147174|Cfl2|12632|cofilin 2, muscle	BC007138|Cfl2|12632|cofilin 2, muscle	AK004659|Cfl2|12632|cofilin 2, muscle	L29468|Cfl2|12632|cofilin 2, muscle	NM_007688|Cfl2|12632|cofilin 2, muscle
mm9_v1_chr2_+_112106470_112106612	0.263616	AACAGUC	BC062099|Slc12a6|107723|solute carrier family 12, member 6	NM_133649|Slc12a6|107723|solute carrier family 12, member 6
mm9_v1_chr5_-_5380077_5380250	0.261826	AACAGUC	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr18_+_83084023_83084023	0.260787	AACAGUC	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr11_+_87861165_87861225	0.260501	AACAGUC	AK150535|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_001078167|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_173374|Srsf1|110809|serine/arginine-rich splicing factor 1	AK053674|Srsf1|110809|serine/arginine-rich splicing factor 1	AK018176|Srsf1|110809|serine/arginine-rich splicing factor 1	BC058627|Srsf1|110809|serine/arginine-rich splicing factor 1	AK078715|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169203|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169623|Srsf1|110809|serine/arginine-rich splicing factor 1	AK190745|Srsf1|110809|serine/arginine-rich splicing factor 1
mm9_v1_chr10_-_120748244_120748244	0.25906	AACAGUC	NM_029057|Tbc1d30|74694|TBC1 domain family, member 30
mm9_v1_chr1_+_75207403_75207474	0.257061	AACAGUC	NM_011494|Stk16|20872|serine/threonine kinase 16	AK032162|Stk16|20872|serine/threonine kinase 16	AK030404|Stk16|20872|serine/threonine kinase 16	AK149539|Stk16|20872|serine/threonine kinase 16	AF089869|Stk16|20872|serine/threonine kinase 16	BC005703|Stk16|20872|serine/threonine kinase 16	BC028999|Stk16|20872|serine/threonine kinase 16	AB022179|Stk16|20872|serine/threonine kinase 16	AK156554|Stk16|20872|serine/threonine kinase 16	AB017197|Stk16|20872|serine/threonine kinase 16	AJ005790|Stk16|20872|serine/threonine kinase 16
mm9_v1_chr6_+_140572056_140572226	0.24822	AACAGUC	NM_001005605|Aebp2|11569|AE binding protein 2
mm9_v1_chr11_-_98010872_98010958	0.2475	AACAGUC	AK220232|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK161566|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK144786|Fbxl20|72194|F-box and leucine-rich repeat protein 20	NM_028149|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK012109|Fbxl20|72194|F-box and leucine-rich repeat protein 20
mm9_v1_chr7_-_127039189_127039258	0.246054	AACAGUC	BC030335|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	AK155160|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	NM_001163703|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm9_v1_chr3_+_157699644_157699694	0.245199	AACAGUC	AK152244|Lrrc40|67144|leucine rich repeat containing 40	AK011726|Lrrc40|67144|leucine rich repeat containing 40	AK170052|Lrrc40|67144|leucine rich repeat containing 40	AK034978|Lrrc40|67144|leucine rich repeat containing 40	NM_024194|Lrrc40|67144|leucine rich repeat containing 40	AK017814|Lrrc40|67144|leucine rich repeat containing 40	AK163288|Lrrc40|67144|leucine rich repeat containing 40	AK148748|Lrrc40|67144|leucine rich repeat containing 40
mm9_v1_chr6_+_14851348_14851478	0.243216	AACAGUC	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr6_-_57641998_57642109	0.24317	AACAGUC	AK011515|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK029193|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK032381|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK003713|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	AK008978|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y	NM_025574|Pigy|66459|phosphatidylinositol glycan anchor biosynthesis, class Y
mm9_v1_chr17_-_33822327_33822413	0.2354	AACAGUC	BC035525|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK159848|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC017539|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC065172|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK168347|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK133911|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK166670|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK169101|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK171892|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK145343|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK011521|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK051976|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK220299|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_001109913|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_029804|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr11_-_88922061_88922089	0.229601	AACAGUC	AK147841|Dgke|56077|diacylglycerol kinase, epsilon	NM_019505|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr5_-_31522889_31523027	0.228878	AACAGUC	BC009004|Ppm1g|14208|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	NM_008014|Ppm1g|14208|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
mm9_v1_chrX_+_139115908_139116076	0.22781	AACAGUC	AK166488|Tmem164|209497|transmembrane protein 164	BC056470|Tmem164|209497|transmembrane protein 164	NM_177592|Tmem164|209497|transmembrane protein 164
mm9_v1_chr1_-_107253245_107253286	0.222507	AACAGUC	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr2_+_173902521_173902654	0.221958	AACAGUC	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr9_+_62189138_62189256	0.219807	AACAGUC	NM_009672|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	AK020753|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	BC062899|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	AF022957|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm9_v1_chr10_-_119913990_119913990	0.218892	AACAGUC	NM_010441|Hmga2|15364|high mobility group AT-hook 2
mm9_v1_chr4_-_84320976_84320992	0.218195	AACAGUC	AK030323|Bnc2|242509|basonuclin 2	NM_172870|Bnc2|242509|basonuclin 2
mm9_v1_chr5_-_33196860_33196908	0.21659	AACAGUC	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr9_+_32031833_32031859	0.215399	AACAGUC	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr15_-_96473193_96473343	0.215179	AACAGUC	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr6_+_4551065_4551157	0.214657	AACAGUC	AB091829|Casd1|213819|CAS1 domain containing 1	NM_145398|Casd1|213819|CAS1 domain containing 1	BC125377|Casd1|213819|CAS1 domain containing 1	BC125379|Casd1|213819|CAS1 domain containing 1
mm9_v1_chr4_+_104040160_104040194	0.21337	AACAGUC	NM_010014|Dab1|13131|disabled homolog 1 (Drosophila)	NM_177259|Dab1|13131|disabled homolog 1 (Drosophila)	Y08379|Dab1|13131|disabled homolog 1 (Drosophila)	Y08380|Dab1|13131|disabled homolog 1 (Drosophila)	Y08381|Dab1|13131|disabled homolog 1 (Drosophila)
mm9_v1_chr4_-_123427465_123427587	0.212239	AACAGUC	AK006378|Akirin1|68050|akirin 1	AK078055|Akirin1|68050|akirin 1	AB041594|Akirin1|68050|akirin 1	AK160087|Akirin1|68050|akirin 1	AK168201|Akirin1|68050|akirin 1	AK168214|Akirin1|68050|akirin 1	AK146017|Akirin1|68050|akirin 1	AK168530|Akirin1|68050|akirin 1	AK159632|Akirin1|68050|akirin 1	NM_023423|Akirin1|68050|akirin 1	BC003291|Akirin1|68050|akirin 1
mm9_v1_chr10_-_62801726_62801784	0.212198	AACAGUC	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr2_-_134380065_134380100	0.207221	AACAGUC	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr1_+_42753970_42753990	0.207189	AACAGUC	NM_008900|Pou3f3|18993|POU domain, class 3, transcription factor 3
mm9_v1_chr4_-_87452140_87452217	0.204877	AACAGUC	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr8_+_14911653_14911743	0.204858	AACAGUC	AK147669|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK051721|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_001037736|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	NM_172751|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK054038|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	AK220332|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10	BC066074|Arhgef10|234094|Rho guanine nucleotide exchange factor (GEF) 10
mm9_v1_chrX_-_137077639_137077729	0.202349	AACAGUC	BC028813|Tsc22d3|14605|TSC22 domain family, member 3	AF201288|Tsc22d3|14605|TSC22 domain family, member 3	AF024519|Tsc22d3|14605|TSC22 domain family, member 3	AK083389|Tsc22d3|14605|TSC22 domain family, member 3	NM_010286|Tsc22d3|14605|TSC22 domain family, member 3	AK144196|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr3_+_137527448_137527565	0.201038	AACAGUC	AK088704|H2afz|51788|H2A histone family, member Z	AK146181|H2afz|51788|H2A histone family, member Z	BC079903|H2afz|51788|H2A histone family, member Z	AK143572|H2afz|51788|H2A histone family, member Z	AK151052|H2afz|51788|H2A histone family, member Z	AK151509|H2afz|51788|H2A histone family, member Z	AK152848|H2afz|51788|H2A histone family, member Z	AK168178|H2afz|51788|H2A histone family, member Z	AK169003|H2afz|51788|H2A histone family, member Z	AY074806|H2afz|51788|H2A histone family, member Z	AK028176|H2afz|51788|H2A histone family, member Z	AK150454|H2afz|51788|H2A histone family, member Z	AK151462|H2afz|51788|H2A histone family, member Z	AK151868|H2afz|51788|H2A histone family, member Z	AK152398|H2afz|51788|H2A histone family, member Z	NM_016750|H2afz|51788|H2A histone family, member Z	U70494|H2afz|51788|H2A histone family, member Z	AK212062|H2afz|51788|H2A histone family, member Z
mm9_v1_chr11_+_75492764_75492890	0.196644	AACAGUC	AK154987|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028179|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK163291|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK152549|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK088519|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK052795|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK139089|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK036905|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028488|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	NM_133656|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161356|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161761|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC012216|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC031149|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	S72408|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AF239673|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm9_v1_chr15_-_73015345_73015397	0.196376	AACAGUC	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr2_-_105239368_105239475	0.191432	AACAGUC	BC049108|Rcn1|19672|reticulocalbin 1	AK159973|Rcn1|19672|reticulocalbin 1	AK017494|Rcn1|19672|reticulocalbin 1	D13003|Rcn1|19672|reticulocalbin 1	AK133971|Rcn1|19672|reticulocalbin 1	NM_009037|Rcn1|19672|reticulocalbin 1
mm9_v1_chr4_-_109959366_109959438	0.190447	AACAGUC	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr1_+_5073161_5073324	0.189016	AACAGUC	AK151659|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK034165|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK135137|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK152147|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK081492|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	BC009154|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK078767|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	NM_133826|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H
mm9_v1_chr1_-_57028171_57028177	0.18806	AACAGUC	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr16_-_50432421_50432504	0.187592	AACAGUC	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr4_-_87679175_87679310	0.186289	AACAGUC	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr13_-_46060325_46060353	0.178122	AACAGUC	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr11_-_100334076_100334121	0.176686	AACAGUC	BC111873|Klhl11|217194|kelch-like 11 (Drosophila)	AK029101|Klhl11|217194|kelch-like 11 (Drosophila)	NM_172565|Klhl11|217194|kelch-like 11 (Drosophila)
mm9_v1_chr11_-_87800799_87801034	0.175961	AACAGUC	AK028319|Dynll2|68097|dynein light chain LC8-type 2	BC011289|Dynll2|68097|dynein light chain LC8-type 2	BC058797|Dynll2|68097|dynein light chain LC8-type 2	BC040822|Dynll2|68097|dynein light chain LC8-type 2	AK011284|Dynll2|68097|dynein light chain LC8-type 2	AK160114|Dynll2|68097|dynein light chain LC8-type 2	AK049645|Dynll2|68097|dynein light chain LC8-type 2	AK078434|Dynll2|68097|dynein light chain LC8-type 2	AK169212|Dynll2|68097|dynein light chain LC8-type 2	NM_026556|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr16_+_64851768_64851933	0.17456	AACAGUC	AK086053|Cggbp1|106143|CGG triplet repeat binding protein 1	AK049631|Cggbp1|106143|CGG triplet repeat binding protein 1	AK052195|Cggbp1|106143|CGG triplet repeat binding protein 1	BC057053|Cggbp1|106143|CGG triplet repeat binding protein 1	AK083450|Cggbp1|106143|CGG triplet repeat binding protein 1	BC043097|Cggbp1|106143|CGG triplet repeat binding protein 1	NM_178647|Cggbp1|106143|CGG triplet repeat binding protein 1
mm9_v1_chr4_+_137150067_137150162	0.174275	AACAGUC	AK166158|Usp48|170707|ubiquitin specific peptidase 48	NM_130879|Usp48|170707|ubiquitin specific peptidase 48	AK220190|Usp48|170707|ubiquitin specific peptidase 48	BC021769|Usp48|170707|ubiquitin specific peptidase 48	AK052297|Usp48|170707|ubiquitin specific peptidase 48
mm9_v1_chr15_+_80629020_80629144	0.171174	AACAGUC	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr14_+_64055230_64055357	0.170708	AACAGUC	NM_177628|Fam167a|219148|family with sequence similarity 167, member A	BC065085|Fam167a|219148|family with sequence similarity 167, member A	BC094561|Fam167a|219148|family with sequence similarity 167, member A
mm9_v1_chr18_-_77952721_77952748	0.170529	AACAGUC	AK046785|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK033209|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK163840|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_178670|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr10_-_40021983_40022002	0.164692	AACAGUC	AK146840|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK166187|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK168165|Amd1|11702|S-adenosylmethionine decarboxylase 1	AK171238|Amd1|11702|S-adenosylmethionine decarboxylase 1	D12780|Amd1|11702|S-adenosylmethionine decarboxylase 1	NM_007444|Amd2|100041585|S-adenosylmethionine decarboxylase 2	NM_009665|Amd1|11702|S-adenosylmethionine decarboxylase 1
mm9_v1_chr15_+_84753817_84753857	0.152434	AACAGUC	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr14_-_35315715_35315752	0.149319	AACAGUC	NM_009758|Bmpr1a|12166|bone morphogenetic protein receptor, type 1A	AK132051|Bmpr1a|12166|bone morphogenetic protein receptor, type 1A
mm9_v1_chr8_+_127536825_127536928	0.147706	AACAGUC	AF187040|Tsnax|53424|translin-associated factor X	NM_016909|Tsnax|53424|translin-associated factor X	AK159223|Tsnax|53424|translin-associated factor X
mm9_v1_chr9_-_99469275_99469317	0.145191	AACAGUC	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr19_+_47654508_47654642	0.145024	AACAGUC	AF039574|Slk|20874|STE20-like kinase (yeast)	NM_001164639|Slk|20874|STE20-like kinase (yeast)	NM_009289|Slk|20874|STE20-like kinase (yeast)	BC131674|Slk|20874|STE20-like kinase (yeast)	BC131675|Slk|20874|STE20-like kinase (yeast)	AF112855|Slk|20874|STE20-like kinase (yeast)	AK029491|Slk|20874|STE20-like kinase (yeast)
mm9_v1_chr9_+_70390659_70390695	0.144867	AACAGUC	AK017715|Sltm|66660|SAFB-like, transcription modulator	AF462146|Sltm|66660|SAFB-like, transcription modulator	NM_025690|Sltm|66660|SAFB-like, transcription modulator	BC139202|Sltm|66660|SAFB-like, transcription modulator	BC145577|Sltm|66660|SAFB-like, transcription modulator
mm9_v1_chr16_+_33185137_33185252	0.141199	AACAGUC	BC035278|Osbpl11|106326|oxysterol binding protein-like 11	NM_176840|Osbpl11|106326|oxysterol binding protein-like 11	BC099400|Osbpl11|106326|oxysterol binding protein-like 11
mm9_v1_chr13_-_85428957_85429102	0.139376	AACAGUC	NM_145452|Rasa1|218397|RAS p21 protein activator 1	AK046620|Rasa1|218397|RAS p21 protein activator 1
mm9_v1_chr7_+_119902897_119902956	0.139012	AACAGUC	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chr2_-_73730605_73730700	0.137518	AACAGUC	AK139844|Atf2|11909|activating transcription factor 2	AK146839|Atf2|11909|activating transcription factor 2	AK139515|Atf2|11909|activating transcription factor 2	BC079883|Atf2|11909|activating transcription factor 2	BC085137|Atf2|11909|activating transcription factor 2	BC082596|Atf2|11909|activating transcription factor 2	AK035438|Atf2|11909|activating transcription factor 2	AK140855|Atf2|11909|activating transcription factor 2	AK144977|Atf2|11909|activating transcription factor 2	AK051591|Atf2|11909|activating transcription factor 2	AK087424|Atf2|11909|activating transcription factor 2	NM_001025093|Atf2|11909|activating transcription factor 2	NM_009715|Atf2|11909|activating transcription factor 2	AK145887|Atf2|11909|activating transcription factor 2
mm9_v1_chr9_+_69837253_69837421	0.134147	AACAGUC	AK169609|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK054288|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	NM_016787|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK159745|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK014659|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161116|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	BC012670|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AF035207|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr5_-_151468105_151468189	0.132992	AACAGUC	AK038740|N4bp2l2|381695|NEDD4 binding protein 2-like 2	BC037393|N4bp2l2|381695|NEDD4 binding protein 2-like 2	NM_201369|N4bp2l2|381695|NEDD4 binding protein 2-like 2
mm9_v1_chr1_+_162836541_162836569	0.131505	AACAGUC	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chr8_-_91568060_91568092	0.130969	AACAGUC	BC062937|Sall1|58198|sal-like 1 (Drosophila)	NM_021390|Sall1|58198|sal-like 1 (Drosophila)
mm9_v1_chr15_-_38448923_38449033	0.129182	AACAGUC	BC046814|Azin1|54375|antizyme inhibitor 1	BC021152|Azin1|54375|antizyme inhibitor 1	BC019412|Azin1|54375|antizyme inhibitor 1	AK088112|Azin1|54375|antizyme inhibitor 1	AK088671|Azin1|54375|antizyme inhibitor 1	AK133914|Azin1|54375|antizyme inhibitor 1	AK049680|Azin1|54375|antizyme inhibitor 1	NM_001102458|Azin1|54375|antizyme inhibitor 1	NM_018745|Azin1|54375|antizyme inhibitor 1
mm9_v1_chr3_-_108714578_108714667	0.127865	AACAGUC	BC050900|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	BC052077|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	NM_025845|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	AK015938|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	AK040788|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	AK159267|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	AK018126|Prpf38b|66921|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm9_v1_chr1_-_132994093_132994119	0.126617	AACAGUC	X76850|Mapkapk2|17164|MAP kinase-activated protein kinase 2	BC063064|Mapkapk2|17164|MAP kinase-activated protein kinase 2	NM_008551|Mapkapk2|17164|MAP kinase-activated protein kinase 2
mm9_v1_chr5_-_99466008_99466097	0.125967	AACAGUC	BC113205|Prkg2|19092|protein kinase, cGMP-dependent, type II	AK038739|Prkg2|19092|protein kinase, cGMP-dependent, type II	AK081422|Prkg2|19092|protein kinase, cGMP-dependent, type II	NM_008926|Prkg2|19092|protein kinase, cGMP-dependent, type II
mm9_v1_chr15_-_50721552_50721725	0.124985	AACAGUC	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr3_-_144233110_144233181	0.120364	AACAGUC	AK165112|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	AK088698|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1	NM_011828|Hs2st1|23908|heparan sulfate 2-O-sulfotransferase 1
mm9_v1_chr14_+_52604434_52604640	0.120329	AACAGUC	AK163945|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_001145921|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_001145922|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	NM_198249|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK134295|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK143527|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK131136|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK147761|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK053592|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	BC059018|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK202688|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40	AK155659|Arhgef40|268739|Rho guanine nucleotide exchange factor (GEF) 40
mm9_v1_chr3_-_33041993_33042007	0.119723	AACAGUC	AK042235|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK083141|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163516|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr15_-_96472600_96472827	0.11881	AACAGUC	AK040250|Slc38a1|105727|solute carrier family 38, member 1	AK029189|Slc38a1|105727|solute carrier family 38, member 1	BC066815|Slc38a1|105727|solute carrier family 38, member 1	BC030378|Slc38a1|105727|solute carrier family 38, member 1	AK049173|Slc38a1|105727|solute carrier family 38, member 1	AK050914|Slc38a1|105727|solute carrier family 38, member 1	AK082683|Slc38a1|105727|solute carrier family 38, member 1	NM_001166456|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr19_+_46130978_46131205	0.113097	AACAGUC	NM_001081214|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK147947|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK044522|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK122322|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	BC066048|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1	AK180476|Pprc1|226169|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm9_v1_chr1_+_180117547_180117811	0.112693	AACAGUC	AK029574|Pppde1|78825|PPPDE peptidase domain containing 1	NM_024282|Pppde1|78825|PPPDE peptidase domain containing 1	AK020014|Pppde1|78825|PPPDE peptidase domain containing 1	AK049579|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr3_-_29912113_29912128	0.112303	AACAGUC	AK085548|Mecom|14013|MDS1 and EVI1 complex locus	NM_007963|Mecom|14013|MDS1 and EVI1 complex locus
mm9_v1_chr16_+_7069927_7069947	0.109324	AACAGUC	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr19_-_58935470_58935484	0.108481	AACAGUC	AY196789|Hspa12a|73442|heat shock protein 12A	AK141925|Hspa12a|73442|heat shock protein 12A	NM_175199|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr14_-_73725576_73725603	0.107885	AACAGUC	AK011246|Rb1|19645|retinoblastoma 1	BC096525|Rb1|19645|retinoblastoma 1	NM_009029|Rb1|19645|retinoblastoma 1
mm9_v1_chr16_+_52031661_52031695	0.107056	AACAGUC	NM_001033238|Cblb|208650|Casitas B-lineage lymphoma b	AK147367|Cblb|208650|Casitas B-lineage lymphoma b
mm9_v1_chr9_+_78296012_78296019	0.102951	AACAGUC	NM_026658|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	AK019088|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	AK017573|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)
mm9_v1_chr11_-_96638811_96638880	0.101309	AACAGUC	AK020952|Snx11|74479|sorting nexin 11	BC014719|Snx11|74479|sorting nexin 11	AK037747|Snx11|74479|sorting nexin 11	AK042409|Snx11|74479|sorting nexin 11	AK076332|Snx11|74479|sorting nexin 11	NM_001163389|Snx11|74479|sorting nexin 11	NM_028965|Snx11|74479|sorting nexin 11
mm9_v1_chr2_-_179711350_179711395	0.0987226	AACAGUC	NM_001081092|Taf4a|228980|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr6_+_38383918_38383949	0.0964132	AACAGUC	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr5_+_137960107_137960139	0.0964041	AACAGUC	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr12_+_60167873_60167985	0.0929318	AACAGUC	NM_008891|Pnn|18949|pinin	AK051640|Pnn|18949|pinin	AK009055|Pnn|18949|pinin	AK085295|Pnn|18949|pinin	AK050669|Pnn|18949|pinin	AK157587|Pnn|18949|pinin	AK028219|Pnn|18949|pinin	AK161109|Pnn|18949|pinin	AK160616|Pnn|18949|pinin	BC132571|Pnn|18949|pinin	BC138014|Pnn|18949|pinin	Y08701|Pnn|18949|pinin	AK030978|Pnn|18949|pinin
mm9_v1_chr4_-_45024999_45025283	0.0898718	AACAGUC	AK160003|Zbtb5|230119|zinc finger and BTB domain containing 5	BC054551|Zbtb5|230119|zinc finger and BTB domain containing 5	AK031172|Zbtb5|230119|zinc finger and BTB domain containing 5	AY635051|Zbtb5|230119|zinc finger and BTB domain containing 5	BC057545|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163283|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163284|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_173399|Zbtb5|230119|zinc finger and BTB domain containing 5
mm9_v1_chrX_+_98469429_98469601	0.0879691	AACAGUC	BC090654|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)	NM_021521|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)
mm9_v1_chr2_-_7317513_7317626	0.0879407	AACAGUC	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr2_+_69561103_69561149	0.0851927	AACAGUC	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr2_-_126969008_126969192	0.0846176	AACAGUC	BC130218|Itpripl1|73338|inositol 1,4,5-triphosphate receptor interacting protein-like 1	AK028913|Itpripl1|73338|inositol 1,4,5-triphosphate receptor interacting protein-like 1	NM_001163527|Itpripl1|73338|inositol 1,4,5-triphosphate receptor interacting protein-like 1
mm9_v1_chr12_+_111723922_111723992	0.0839567	AACAGUC	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr6_-_92484838_92484854	0.0834085	AACAGUC	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr1_-_127331883_127332158	0.082464	AACAGUC	AK147931|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK160047|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168568|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150487|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153204|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159668|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167891|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150991|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167148|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	BC005557|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	NM_023735|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168771|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150589|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159135|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK152865|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153150|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159775|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK004554|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK083343|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK145536|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153079|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)
mm9_v1_chr1_+_55188086_55188145	0.0812539	AACAGUC	NM_025283|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK162327|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK147857|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK020446|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC028500|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC037499|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC058168|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC052475|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	U01138|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)
mm9_v1_chr9_+_98197001_98197080	0.0761938	AACAGUC	BC005737|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	NM_144533|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK040783|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041526|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041897|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3
mm9_v1_chr8_+_109817355_109817761	0.0754909	AACAGUC	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr13_-_3892788_3892823	0.0732693	AACAGUC	AJ010045|Net1|56349|neuroepithelial cell transforming gene 1	AK020636|Net1|56349|neuroepithelial cell transforming gene 1	AK088632|Net1|56349|neuroepithelial cell transforming gene 1	AK139921|Net1|56349|neuroepithelial cell transforming gene 1	BC004699|Net1|56349|neuroepithelial cell transforming gene 1	AK082128|Net1|56349|neuroepithelial cell transforming gene 1	NM_001047159|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr10_-_116585527_116585608	0.0724622	AACAGUC	BC043109|Frs2|327826|fibroblast growth factor receptor substrate 2	NM_177798|Frs2|327826|fibroblast growth factor receptor substrate 2	AK028813|Frs2|327826|fibroblast growth factor receptor substrate 2	AK163442|Frs2|327826|fibroblast growth factor receptor substrate 2	BC055334|Frs2|327826|fibroblast growth factor receptor substrate 2	AK138144|Frs2|327826|fibroblast growth factor receptor substrate 2
mm9_v1_chr12_+_33063653_33063723	0.0723714	AACAGUC	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr6_+_114347929_114347929	0.0722127	AACAGUC	AK046607|Hrh1|15465|histamine receptor H1	NM_008285|Hrh1|15465|histamine receptor H1
mm9_v1_chr4_+_123594654_123594675	0.0719053	AACAGUC	NM_017475|Rragc|54170|Ras-related GTP binding C
mm9_v1_chr14_+_14845004_14845173	0.0717983	AACAGUC	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr3_-_57379600_57379797	0.0695728	AACAGUC	AK213529|Wwtr1|97064|WW domain containing transcription regulator 1	BC004640|Wwtr1|97064|WW domain containing transcription regulator 1	AK142720|Wwtr1|97064|WW domain containing transcription regulator 1	AK009983|Wwtr1|97064|WW domain containing transcription regulator 1	AJ299430|Wwtr1|97064|WW domain containing transcription regulator 1	BC014727|Wwtr1|97064|WW domain containing transcription regulator 1	AK011504|Wwtr1|97064|WW domain containing transcription regulator 1	NM_133784|Wwtr1|97064|WW domain containing transcription regulator 1
mm9_v1_chr4_+_154338216_154338246	0.0654793	AACAGUC	AK050894|Pank4|269614|pantothenate kinase 4	BC050089|Pank4|269614|pantothenate kinase 4	NM_172990|Pank4|269614|pantothenate kinase 4
mm9_v1_chr1_-_44159187_44159306	0.0654776	AACAGUC	BC116881|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC119032|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	AK160565|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	NM_029368|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC099557|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene
mm9_v1_chr1_-_193007202_193007214	0.0610377	AACAGUC	BC019946|Atf3|11910|activating transcription factor 3	NM_007498|Atf3|11910|activating transcription factor 3	AK133965|Atf3|11910|activating transcription factor 3
mm9_v1_chr16_+_32430986_32431114	0.0603216	AACAGUC	AK044585|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	NM_009981|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	L28956|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	Z12302|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	AK076050|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	NM_001163159|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform
mm9_v1_chr18_+_46901515_46901706	0.0598766	AACAGUC	AK152100|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	AK137489|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	NM_009681|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC108327|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	AK002565|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC012656|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC131985|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	BC145234|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit	AF084575|Ap3s1|11777|adaptor-related protein complex 3, sigma 1 subunit
mm9_v1_chr4_+_124479785_124479853	0.0597726	AACAGUC	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr16_+_17233664_17233756	0.0565188	AACAGUC	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chr15_+_101054589_101054674	0.0557907	AACAGUC	NM_019518|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	AB041603|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	BC046307|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	AF236099|Grasp|56149|GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein
mm9_v1_chr13_-_102462584_102462601	0.0556398	AACAGUC	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr4_+_141000576_141000628	0.0548957	AACAGUC	NM_009541|Zbtb17|22642|zinc finger and BTB domain containing 17	U14556|Zbtb17|22642|zinc finger and BTB domain containing 17	AK051971|Zbtb17|22642|zinc finger and BTB domain containing 17	U22396|Zbtb17|22642|zinc finger and BTB domain containing 17	BC060055|Zbtb17|22642|zinc finger and BTB domain containing 17	AK134251|Zbtb17|22642|zinc finger and BTB domain containing 17
mm9_v1_chrX_-_54756877_54756933	0.0546242	AACAGUC	AK138185|Gpr101|245424|G protein-coupled receptor 101	DQ198079|Gpr101|245424|G protein-coupled receptor 101	AK138370|Gpr101|245424|G protein-coupled receptor 101	NM_001033360|Gpr101|245424|G protein-coupled receptor 101
mm9_v1_chr17_+_74794946_74794992	0.0518791	AACAGUC	BC068169|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK160903|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK082907|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	NM_144798|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK150342|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK151120|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	AK020581|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6	BC066162|Slc30a6|210148|solute carrier family 30 (zinc transporter), member 6
mm9_v1_chr3_-_95161071_95161127	0.0465011	AACAGUC	AK135833|Setdb1|84505|SET domain, bifurcated 1	BC079537|Setdb1|84505|SET domain, bifurcated 1	AF091628|Setdb1|84505|SET domain, bifurcated 1	AF546078|Setdb1|84505|SET domain, bifurcated 1	AY091600|Setdb1|84505|SET domain, bifurcated 1	BC060173|Setdb1|84505|SET domain, bifurcated 1	AK132202|Setdb1|84505|SET domain, bifurcated 1	NM_001163641|Setdb1|84505|SET domain, bifurcated 1	NM_001163642|Setdb1|84505|SET domain, bifurcated 1	NM_018877|Setdb1|84505|SET domain, bifurcated 1
mm9_v1_chr2_-_103637795_103637829	0.0437847	AACAGUC	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr9_+_100544034_100544056	0.0428663	AACAGUC	AK052003|Stag1|20842|stromal antigen 1	BC062954|Stag1|20842|stromal antigen 1	NM_009282|Stag1|20842|stromal antigen 1	AK017978|Stag1|20842|stromal antigen 1
mm9_v1_chr3_-_108365340_108365435	0.041436	AACAGUC	NM_026198|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr17_+_86020173_86020181	0.0413948	AACAGUC	NM_011381|Six3|20473|sine oculis-related homeobox 3 homolog (Drosophila)
mm9_v1_chr12_-_27100112_27100136	0.039948	AACAGUC	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr15_-_96472392_96472392	0.0398638	AACAGUC	AK034130|Slc38a1|105727|solute carrier family 38, member 1	NM_134086|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr3_-_32981940_32981960	0.0378984	AACAGUC	AB032591|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK039764|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_021483|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr2_-_7317824_7317824	0.0356262	AACAGUC	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr19_-_4989865_4989972	0.0324155	AACAGUC	AB049835|Npas4|225872|neuronal PAS domain protein 4	BC129861|Npas4|225872|neuronal PAS domain protein 4	AK032607|Npas4|225872|neuronal PAS domain protein 4	NM_153553|Npas4|225872|neuronal PAS domain protein 4
mm9_v1_chr5_-_138227888_138227970	0.0317521	AACAGUC	AK154415|Mepce|231803|methylphosphate capping enzyme	NM_144913|Mepce|231803|methylphosphate capping enzyme
mm9_v1_chr1_+_154802198_154802230	0.0313467	AACAGUC	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr15_+_38837818_38837834	0.0308992	AACAGUC	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr14_-_55482884_55482994	0.0285717	AACAGUC	AK129361|Homez|239099|homeodomain leucine zipper-encoding gene	AY258064|Homez|239099|homeodomain leucine zipper-encoding gene	NM_001177705|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr9_+_103014374_103014418	0.0278573	AACAGUC	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr1_-_45560001_45560126	0.0274224	AACAGUC	AK147328|Col5a2|12832|collagen, type V, alpha 2	NM_007737|Col5a2|12832|collagen, type V, alpha 2
mm9_v1_chr9_+_118515769_118515921	0.0273892	AACAGUC	AJ344342|Itga9|104099|integrin alpha 9	NM_133721|Itga9|104099|integrin alpha 9	BC150824|Itga9|104099|integrin alpha 9
mm9_v1_chr1_+_23768764_23768872	0.0261839	AACAGUC	AK052640|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	NM_172124|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AB055902|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK048146|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK220433|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC056368|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC058082|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm9_v1_chr5_-_36826896_36826947	0.0252968	AACAGUC	NM_001170454|Tada2b|231151|transcriptional adaptor 2B
mm9_v1_chr18_-_10029925_10030160	0.0229271	AACAGUC	AB034633|Usp14|59025|ubiquitin specific peptidase 14	BC050197|Usp14|59025|ubiquitin specific peptidase 14	AK045909|Usp14|59025|ubiquitin specific peptidase 14	BC005571|Usp14|59025|ubiquitin specific peptidase 14	AK029977|Usp14|59025|ubiquitin specific peptidase 14	AK160215|Usp14|59025|ubiquitin specific peptidase 14	AK011322|Usp14|59025|ubiquitin specific peptidase 14	AK172477|Usp14|59025|ubiquitin specific peptidase 14	AK170933|Usp14|59025|ubiquitin specific peptidase 14	NM_001038589|Usp14|59025|ubiquitin specific peptidase 14	NM_021522|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr4_-_110024513_110024515	0.022566	AACAGUC	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr17_+_36974084_36974137	0.0208351	AACAGUC	AK171019|Trim26|22670|tripartite motif-containing 26	NM_001025599|Trim26|22670|tripartite motif-containing 26	AK042252|Trim26|22670|tripartite motif-containing 26	BC037110|Trim26|22670|tripartite motif-containing 26
mm9_v1_chr2_-_26300698_26300744	0.0206786	AACAGUC	AK157671|Sec16a|227648|SEC16 homolog A (S. cerevisiae)	AK162931|Sec16a|227648|SEC16 homolog A (S. cerevisiae)	NM_153125|Sec16a|227648|SEC16 homolog A (S. cerevisiae)
mm9_v1_chr9_+_120842695_120842727	0.0205788	AACAGUC	M90364|Ctnnb1|12387|catenin (cadherin associated protein), beta 1	NM_001165902|Ctnnb1|12387|catenin (cadherin associated protein), beta 1
mm9_v1_chr4_+_13711928_13711928	0.0205591	AACAGUC	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr18_-_44821919_44821954	0.0166142	AACAGUC	AK054528|Mcc|328949|mutated in colorectal cancers	NM_001085374|Mcc|328949|mutated in colorectal cancers	AK086823|Mcc|328949|mutated in colorectal cancers
mm9_v1_chr1_-_184447549_184447745	0.015751	AACAGUC	AF015038|Capn2|12334|calpain 2	AK150695|Capn2|12334|calpain 2	AK152094|Capn2|12334|calpain 2	AK152790|Capn2|12334|calpain 2	AK152994|Capn2|12334|calpain 2	AK052141|Capn2|12334|calpain 2	BC054726|Capn2|12334|calpain 2	NM_009794|Capn2|12334|calpain 2	AK154855|Capn2|12334|calpain 2	D38117|Capn2|12334|calpain 2	AK053832|Capn2|12334|calpain 2
mm9_v1_chr11_+_29618531_29618569	0.0148362	AACAGUC	NM_024226|Rtn4|68585|reticulon 4	AY102283|Rtn4|68585|reticulon 4
mm9_v1_chr1_-_37776633_37776680	0.014266	AACAGUC	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr3_+_84668066_84668066	0.0132804	AACAGUC	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr3_+_90070455_90070469	0.0128822	AACAGUC	NM_201407|Dennd4b|229541|DENN/MADD domain containing 4B	AK155638|Dennd4b|229541|DENN/MADD domain containing 4B
mm9_v1_chr11_-_60034046_60034130	0.0127965	AACAGUC	AK154424|Srebf1|20787|sterol regulatory element binding transcription factor 1	BC056922|Srebf1|20787|sterol regulatory element binding transcription factor 1	AK150052|Srebf1|20787|sterol regulatory element binding transcription factor 1	AK052628|Srebf1|20787|sterol regulatory element binding transcription factor 1	AK169607|Srebf1|20787|sterol regulatory element binding transcription factor 1	NM_011480|Srebf1|20787|sterol regulatory element binding transcription factor 1
mm9_v1_chr2_-_20889276_20889347	0.0122304	AACAGUC	BC150741|Arhgap21|71435|Rho GTPase activating protein 21	BC076629|Arhgap21|71435|Rho GTPase activating protein 21	NM_001081364|Arhgap21|71435|Rho GTPase activating protein 21	NM_001128084|Arhgap21|71435|Rho GTPase activating protein 21
mm9_v1_chr11_+_57615080_57615164	0.0116537	AACAGUC	BC051686|Sap30l|50724|SAP30-like	NM_001081168|Sap30l|50724|SAP30-like	BC094930|Sap30l|50724|SAP30-like
mm9_v1_chrX_+_149672587_149672587	0.00687615	AACAGUC	AK044185|Klf8|245671|Kruppel-like factor 8	NM_173780|Klf8|245671|Kruppel-like factor 8
mm9_v1_chrX_-_92361778_92361824	0.00343125	AACAGUC	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr17_+_35998262_35998322	0.00310056	AACAGUC	BC021750|Nrm|106582|nurim (nuclear envelope membrane protein)	NM_134122|Nrm|106582|nurim (nuclear envelope membrane protein)	BC026576|Nrm|106582|nurim (nuclear envelope membrane protein)
mm9_v1_chr13_+_94077988_94077988	0.00305406	AACAGUC	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr15_-_44946441_44946479	0.00201265	AACAGUC	AK038450|Kcnv1|67498|potassium channel, subfamily V, member 1	NM_026200|Kcnv1|67498|potassium channel, subfamily V, member 1
mm9_v1_chr12_-_51750204_51750242	0.00117705	AACAGUC	NM_008858|Prkd1|18760|protein kinase D1
mm9_v1_chrX_-_137135022_137135060	0.00113053	AACAGUC	AF201289|Tsc22d3|14605|TSC22 domain family, member 3	EU818782|Tsc22d3|14605|TSC22 domain family, member 3	NM_001077364|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chrX_-_165015162_165015164	0.000761902	AACAGUC	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr8_-_75876420_75876517	0.000433884	AACAGUC	BC125487|Large|16795|like-glycosyltransferase	BC125489|Large|16795|like-glycosyltransferase	AJ006278|Large|16795|like-glycosyltransferase	NM_010687|Large|16795|like-glycosyltransferase	BC100399|Large|16795|like-glycosyltransferase
