mm9_v1_chrX_+_39503858_39503966	0.496229	AACCUGG	AK146718|Stag2|20843|stromal antigen 2	AK168899|Stag2|20843|stromal antigen 2	NM_021465|Stag2|20843|stromal antigen 2
mm9_v1_chr6_-_39156706_39156787	0.459791	AACCUGG	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr18_+_10325174_10325177	0.403284	AACCUGG	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr2_+_79095582_79095877	0.360582	AACCUGG	AK041096|Itga4|16401|integrin alpha 4	NM_010576|Itga4|16401|integrin alpha 4	AK051676|Itga4|16401|integrin alpha 4	X53176|Itga4|16401|integrin alpha 4	AK156015|Itga4|16401|integrin alpha 4	AK039959|Itga4|16401|integrin alpha 4	AF109136|Itga4|16401|integrin alpha 4	BC068313|Itga4|16401|integrin alpha 4	AK156517|Itga4|16401|integrin alpha 4	AK078842|Itga4|16401|integrin alpha 4
mm9_v1_chr2_+_27532692_27532866	0.328785	AACCUGG	AK144675|Rxra|20181|retinoid X receptor alpha	NM_011305|Rxra|20181|retinoid X receptor alpha	M84817|Rxra|20181|retinoid X receptor alpha	BC138800|Rxra|20181|retinoid X receptor alpha	BC138802|Rxra|20181|retinoid X receptor alpha	X66223|Rxra|20181|retinoid X receptor alpha	AK031034|Rxra|20181|retinoid X receptor alpha
mm9_v1_chr19_-_12576485_12576634	0.308626	AACCUGG	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr5_+_73305509_73305751	0.283885	AACCUGG	NM_001113423|Slain2|75991|SLAIN motif family, member 2	NM_153567|Slain2|75991|SLAIN motif family, member 2	AK146432|Slain2|75991|SLAIN motif family, member 2	AK129365|Slain2|75991|SLAIN motif family, member 2	BC010836|Slain2|75991|SLAIN motif family, member 2	AK033137|Slain2|75991|SLAIN motif family, member 2	AK039970|Slain2|75991|SLAIN motif family, member 2	BC076573|Slain2|75991|SLAIN motif family, member 2
mm9_v1_chr17_-_25570721_25570730	0.261239	AACCUGG	AB041801|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	AK147242|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	NM_001163691|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	NM_021415|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	AK043501|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm9_v1_chr9_-_36575157_36575263	0.22489	AACCUGG	AK153840|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK160607|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	NM_008408|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	BC085313|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK077877|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK169669|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK189214|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	BC037612|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK081427|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK087470|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK129027|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK160037|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AX799090|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	L34260|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK150640|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK152242|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK168505|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK168937|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK081547|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK151541|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK151791|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK030363|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK153886|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr2_-_94278303_94278325	0.222191	AACCUGG	AK137466|Api5|11800|apoptosis inhibitor 5	NM_007466|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr1_-_84835871_84836168	0.213886	AACCUGG	AK158807|Trip12|14897|thyroid hormone receptor interactor 12	NM_133975|Trip12|14897|thyroid hormone receptor interactor 12
mm9_v1_chr6_-_38249209_38249350	0.191908	AACCUGG	AK084475|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	AK045287|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	AK051064|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	NM_172467|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	BC138180|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like	BC138181|Zc3hav1l|209032|zinc finger CCCH-type, antiviral 1-like
mm9_v1_chr1_+_88483674_88483733	0.176027	AACCUGG	AK081309|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	NM_172974|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK053615|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK168740|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AK170140|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	AF071317|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)	BC012659|Cops7b|26895|COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)
mm9_v1_chr6_-_71390592_71390638	0.162574	AACCUGG	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr18_+_67550365_67550388	0.144247	AACCUGG	AK144815|Tubb6|67951|tubulin, beta 6	AK009958|Tubb6|67951|tubulin, beta 6	BC008225|Tubb6|67951|tubulin, beta 6	NM_026473|Tubb6|67951|tubulin, beta 6	AK151643|Tubb6|67951|tubulin, beta 6
mm9_v1_chr9_+_21528037_21528221	0.142576	AACCUGG	NM_010700|Ldlr|16835|low density lipoprotein receptor	AK076243|Ldlr|16835|low density lipoprotein receptor	AK151968|Ldlr|16835|low density lipoprotein receptor	BC053041|Ldlr|16835|low density lipoprotein receptor	AK170264|Ldlr|16835|low density lipoprotein receptor	AK149950|Ldlr|16835|low density lipoprotein receptor	AK160006|Ldlr|16835|low density lipoprotein receptor	AK161104|Ldlr|16835|low density lipoprotein receptor	AK166466|Ldlr|16835|low density lipoprotein receptor	AK018697|Ldlr|16835|low density lipoprotein receptor	AK152103|Ldlr|16835|low density lipoprotein receptor	X64414|Ldlr|16835|low density lipoprotein receptor	BC019207|Ldlr|16835|low density lipoprotein receptor	AK184620|Ldlr|16835|low density lipoprotein receptor	AF425607|Ldlr|16835|low density lipoprotein receptor	Z19521|Ldlr|16835|low density lipoprotein receptor
mm9_v1_chr7_-_81158546_81158567	0.137592	AACCUGG	X83562|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	BC096546|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	NM_009181|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm9_v1_chr1_-_137327006_137327084	0.137189	AACCUGG	AJ309238|Ipo9|226432|importin 9	AF273672|Ipo9|226432|importin 9	AF273673|Ipo9|226432|importin 9	AK036687|Ipo9|226432|importin 9	BC098508|Ipo9|226432|importin 9	BC056469|Ipo9|226432|importin 9	BC079546|Ipo9|226432|importin 9	NM_153774|Ipo9|226432|importin 9
mm9_v1_chr2_+_75497282_75497379	0.133539	AACCUGG	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr18_+_54021746_54021814	0.122413	AACCUGG	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chrX_+_35542969_35543017	0.114386	AACCUGG	NM_001079513|Zbtb33|56805|zinc finger and BTB domain containing 33	NM_020256|Zbtb33|56805|zinc finger and BTB domain containing 33	AK087417|Zbtb33|56805|zinc finger and BTB domain containing 33	AK089423|Zbtb33|56805|zinc finger and BTB domain containing 33	AF097416|Zbtb33|56805|zinc finger and BTB domain containing 33
mm9_v1_chr15_+_103070840_103070935	0.108632	AACCUGG	AK131999|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK136113|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146630|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_001039129|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_010447|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168531|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK135391|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK152684|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK161730|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166901|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167161|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167810|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167811|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168420|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168733|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK169216|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK007802|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK088308|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146126|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166989|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167820|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167913|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	M99167|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC052723|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC080675|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC092395|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC089340|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC083136|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86728|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86729|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1
mm9_v1_chr17_+_24551509_24551671	0.100343	AACCUGG	AK143213|Rnps1|19826|ribonucleic acid binding protein S1	AK011475|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080127|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080128|Rnps1|19826|ribonucleic acid binding protein S1	NM_009070|Rnps1|19826|ribonucleic acid binding protein S1	AK146443|Rnps1|19826|ribonucleic acid binding protein S1	AK151150|Rnps1|19826|ribonucleic acid binding protein S1	BC002061|Rnps1|19826|ribonucleic acid binding protein S1	AK165905|Rnps1|19826|ribonucleic acid binding protein S1	AK164151|Rnps1|19826|ribonucleic acid binding protein S1
mm9_v1_chr15_-_91022198_91022269	0.0990048	AACCUGG	AK082588|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	AK051445|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	Z48670|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	NM_011994|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2
mm9_v1_chr8_-_28285056_28285121	0.0942448	AACCUGG	AK014696|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK089792|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC125400|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC132094|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK166735|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK086797|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK151024|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK030769|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_001080813|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_029423|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)
mm9_v1_chr8_-_93837120_93837168	0.085805	AACCUGG	AK029911|Rpgrip1l|244585|Rpgrip1-like	NM_173431|Rpgrip1l|244585|Rpgrip1-like	AJ344253|Rpgrip1l|244585|Rpgrip1-like
mm9_v1_chr7_+_73834774_73834871	0.0846898	AACCUGG	NM_001191001|Lins|72635|lines homolog (Drosophila)	NM_152815|Lins|72635|lines homolog (Drosophila)	AK156066|Lins|72635|lines homolog (Drosophila)	AK044132|Lins|72635|lines homolog (Drosophila)	AK012554|Lins|72635|lines homolog (Drosophila)	AK171170|Lins|72635|lines homolog (Drosophila)	BC030943|Lins|72635|lines homolog (Drosophila)	BC058648|Lins|72635|lines homolog (Drosophila)
mm9_v1_chr11_+_76759157_76759353	0.0845471	AACCUGG	NM_178645|Blmh|104184|bleomycin hydrolase	AK029274|Blmh|104184|bleomycin hydrolase	AK049461|Blmh|104184|bleomycin hydrolase	AK051441|Blmh|104184|bleomycin hydrolase	AK150438|Blmh|104184|bleomycin hydrolase	BC027403|Blmh|104184|bleomycin hydrolase	AK040799|Blmh|104184|bleomycin hydrolase	BC027362|Blmh|104184|bleomycin hydrolase	BC024090|Blmh|104184|bleomycin hydrolase	AK053872|Blmh|104184|bleomycin hydrolase	AK150896|Blmh|104184|bleomycin hydrolase	AK167325|Blmh|104184|bleomycin hydrolase	AK035228|Blmh|104184|bleomycin hydrolase	BC027037|Blmh|104184|bleomycin hydrolase	AK197894|Blmh|104184|bleomycin hydrolase	AK199579|Blmh|104184|bleomycin hydrolase
mm9_v1_chr17_+_64950988_64951003	0.0807646	AACCUGG	NM_008549|Man2a1|17158|mannosidase 2, alpha 1	X61172|Man2a1|17158|mannosidase 2, alpha 1	BC138371|Man2a1|17158|mannosidase 2, alpha 1	BC138372|Man2a1|17158|mannosidase 2, alpha 1
mm9_v1_chr11_+_59120429_59120467	0.0797222	AACCUGG	AK087490|Wnt9a|216795|wingless-type MMTV integration site 9A	NM_139298|Wnt9a|216795|wingless-type MMTV integration site 9A	BC066165|Wnt9a|216795|wingless-type MMTV integration site 9A	AB072311|Wnt9a|216795|wingless-type MMTV integration site 9A
mm9_v1_chr18_+_42435006_42435038	0.079668	AACCUGG	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chrX_+_12648604_12648673	0.0758535	AACCUGG	AK049283|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	NM_009481|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	AK028443|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	DQ086491|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome	U67874|Usp9x|22284|ubiquitin specific peptidase 9, X chromosome
mm9_v1_chr9_+_54765084_54765153	0.0712649	AACCUGG	AK085527|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK162425|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	NM_177351|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK138851|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK083218|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK142509|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK163926|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK048771|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	BC038618|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1	AK087279|Agphd1|235386|aminoglycoside phosphotransferase domain containing 1
mm9_v1_chr16_-_50432421_50432504	0.0711364	AACCUGG	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr10_-_14264800_14264841	0.0702863	AACCUGG	AB183545|Gpr126|215798|G protein-coupled receptor 126	NM_001002268|Gpr126|215798|G protein-coupled receptor 126
mm9_v1_chr7_+_26067197_26067278	0.0646495	AACCUGG	AK147276|Cic|71722|capicua homolog (Drosophila)	NM_001110131|Cic|71722|capicua homolog (Drosophila)	NM_001110132|Cic|71722|capicua homolog (Drosophila)	NM_027882|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr4_+_32504409_32504501	0.0624722	AACCUGG	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr6_+_67216948_67217032	0.0612694	AACCUGG	AK004678|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113564|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113565|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113566|Serbp1|66870|serpine1 mRNA binding protein 1	NM_025814|Serbp1|66870|serpine1 mRNA binding protein 1	AK010860|Serbp1|66870|serpine1 mRNA binding protein 1	AK144764|Serbp1|66870|serpine1 mRNA binding protein 1	AK158095|Serbp1|66870|serpine1 mRNA binding protein 1	AK010851|Serbp1|66870|serpine1 mRNA binding protein 1	AK011051|Serbp1|66870|serpine1 mRNA binding protein 1	AK149505|Serbp1|66870|serpine1 mRNA binding protein 1	AK012390|Serbp1|66870|serpine1 mRNA binding protein 1	AK088278|Serbp1|66870|serpine1 mRNA binding protein 1	AK131990|Serbp1|66870|serpine1 mRNA binding protein 1	AK135473|Serbp1|66870|serpine1 mRNA binding protein 1	AK139670|Serbp1|66870|serpine1 mRNA binding protein 1	AK146418|Serbp1|66870|serpine1 mRNA binding protein 1	AK045190|Serbp1|66870|serpine1 mRNA binding protein 1	BC006030|Serbp1|66870|serpine1 mRNA binding protein 1	BC013665|Serbp1|66870|serpine1 mRNA binding protein 1	BC030502|Serbp1|66870|serpine1 mRNA binding protein 1
mm9_v1_chr5_+_16059312_16059745	0.0606622	AACCUGG	AK052289|Hgf|15234|hepatocyte growth factor	AK042121|Hgf|15234|hepatocyte growth factor	NM_010427|Hgf|15234|hepatocyte growth factor	AK142159|Hgf|15234|hepatocyte growth factor	BC119228|Hgf|15234|hepatocyte growth factor	BC144764|Hgf|15234|hepatocyte growth factor	AK082461|Hgf|15234|hepatocyte growth factor	X72307|Hgf|15234|hepatocyte growth factor	X84046|Hgf|15234|hepatocyte growth factor	AF042856|Hgf|15234|hepatocyte growth factor	D10212|Hgf|15234|hepatocyte growth factor	D10213|Hgf|15234|hepatocyte growth factor	S71816|Hgf|15234|hepatocyte growth factor
mm9_v1_chr10_-_90545483_90545514	0.0584664	AACCUGG	AK220340|Apaf1|11783|apoptotic peptidase activating factor 1	NM_001042558|Apaf1|11783|apoptotic peptidase activating factor 1	NM_009684|Apaf1|11783|apoptotic peptidase activating factor 1	BC045144|Apaf1|11783|apoptotic peptidase activating factor 1
mm9_v1_chr16_-_31274947_31275377	0.049098	AACCUGG	AK015349|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK053657|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069886|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK002671|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK032462|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK028603|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069885|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK150281|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	NM_025800|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm9_v1_chr15_-_79377170_79377216	0.0457227	AACCUGG	BC096036|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_001040187|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_199080|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr11_+_77328596_77328700	0.0453255	AACCUGG	AK046590|Abhd15|67477|abhydrolase domain containing 15	NM_026185|Abhd15|67477|abhydrolase domain containing 15	AK004929|Abhd15|67477|abhydrolase domain containing 15	AK153809|Abhd15|67477|abhydrolase domain containing 15	FJ154119|Abhd15|67477|abhydrolase domain containing 15
mm9_v1_chr18_-_36614140_36614187	0.0416968	AACCUGG	BC094627|Pfdn1|67199|prefoldin 1	AK002575|Pfdn1|67199|prefoldin 1	AK012575|Pfdn1|67199|prefoldin 1	NM_026027|Pfdn1|67199|prefoldin 1	AK028148|Pfdn1|67199|prefoldin 1	AK010532|Pfdn1|67199|prefoldin 1	AK003330|Pfdn1|67199|prefoldin 1	BC024693|Pfdn1|67199|prefoldin 1
mm9_v1_chr12_-_80397239_80397289	0.0415604	AACCUGG	AK220333|Zfyve26|211978|zinc finger, FYVE domain containing 26	BC141359|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK132344|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK041668|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK135518|Zfyve26|211978|zinc finger, FYVE domain containing 26	NM_001008550|Zfyve26|211978|zinc finger, FYVE domain containing 26
mm9_v1_chr5_-_138596915_138596971	0.0403249	AACCUGG	BC052453|Zfp113|56314|zinc finger protein 113	BC054525|Zfp113|56314|zinc finger protein 113	BC056991|Zfp113|56314|zinc finger protein 113	AF167320|Zfp113|56314|zinc finger protein 113	AK076349|Zfp113|56314|zinc finger protein 113	AK220556|Zfp113|56314|zinc finger protein 113	NM_019747|Zfp113|56314|zinc finger protein 113
mm9_v1_chrX_-_162948399_162948409	0.0382296	AACCUGG	AK140929|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	BC067008|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	NM_001007577|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing
mm9_v1_chr18_+_60685866_60685974	0.03738	AACCUGG	AK162552|Dctn4|67665|dynactin 4	AK168484|Dctn4|67665|dynactin 4	AK160813|Dctn4|67665|dynactin 4	AK050896|Dctn4|67665|dynactin 4	AK019382|Dctn4|67665|dynactin 4	BC034725|Dctn4|67665|dynactin 4	NM_026302|Dctn4|67665|dynactin 4	AK141855|Dctn4|67665|dynactin 4	AK003238|Dctn4|67665|dynactin 4	AK089264|Dctn4|67665|dynactin 4	BC006677|Dctn4|67665|dynactin 4	AK177969|Dctn4|67665|dynactin 4	AK197489|Dctn4|67665|dynactin 4
mm9_v1_chr8_-_3279545_3279616	0.032329	AACCUGG	AK052187|Insr|16337|insulin receptor	NM_010568|Insr|16337|insulin receptor
mm9_v1_chr6_-_51419881_51419892	0.0300584	AACCUGG	AK049771|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK137214|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_016806|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_182650|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr7_-_91558468_91558528	0.0286647	AACCUGG	BC054546|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2	NM_007488|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr3_+_95908422_95908559	0.0269313	AACCUGG	AK044701|Otud7b|229603|OTU domain containing 7B	NM_001025613|Otud7b|229603|OTU domain containing 7B	NM_001025614|Otud7b|229603|OTU domain containing 7B	AK078327|Otud7b|229603|OTU domain containing 7B	BC141397|Otud7b|229603|OTU domain containing 7B	BC141398|Otud7b|229603|OTU domain containing 7B
mm9_v1_chr7_-_24993103_24993167	0.0252097	AACCUGG	BC005456|Zfp111|56707|zinc finger protein 111	AK135436|Zfp111|56707|zinc finger protein 111	NM_019940|Zfp111|56707|zinc finger protein 111
mm9_v1_chr5_+_97426665_97426877	0.0235245	AACCUGG	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr7_-_141416778_141416785	0.0226732	AACCUGG	D50411|Adam12|11489|a disintegrin and metallopeptidase domain 12 (meltrin alpha)	NM_007400|Adam12|11489|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm9_v1_chr16_+_16896561_16896699	0.0197815	AACCUGG	AK016942|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	NM_176833|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK154192|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK164964|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)
mm9_v1_chr2_+_164630599_164630613	0.0189809	AACCUGG	AK014904|Zswim3|67538|zinc finger, SWIM domain containing 3	BC023287|Zswim3|67538|zinc finger, SWIM domain containing 3	NM_178375|Zswim3|67538|zinc finger, SWIM domain containing 3
mm9_v1_chr7_-_129245303_129245368	0.015975	AACCUGG	AK167447|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK089103|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC092379|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC060951|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018717|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK008788|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK009698|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK010307|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK011302|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018688|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK151719|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK152995|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	NM_028177|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr11_+_75546384_75546451	0.0147223	AACCUGG	NM_009536|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	BC058686|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK169812|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK075995|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr10_+_80599005_80599015	0.0115791	AACCUGG	BC024815|Zbtb7a|16969|zinc finger and BTB domain containing 7a	NM_010731|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr9_+_100978450_100978485	0.0107119	AACCUGG	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr9_+_74823917_74823980	0.00999098	AACCUGG	BC031353|BC031353|235493|cDNA sequence BC031353	NM_153584|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr3_-_107434441_107434654	0.00813368	AACCUGG	AK194900|Fam40a|229707|family with sequence similarity 40, member A	BC023952|Fam40a|229707|family with sequence similarity 40, member A	AK032065|Fam40a|229707|family with sequence similarity 40, member A	AK032642|Fam40a|229707|family with sequence similarity 40, member A	AK035833|Fam40a|229707|family with sequence similarity 40, member A	AK148011|Fam40a|229707|family with sequence similarity 40, member A	AK169644|Fam40a|229707|family with sequence similarity 40, member A	NM_153563|Fam40a|229707|family with sequence similarity 40, member A
mm9_v1_chr11_+_78640059_78640096	0.0065039	AACCUGG	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr17_-_30713158_30713239	0.0042669	AACCUGG	AK153973|Btbd9|224671|BTB (POZ) domain containing 9	NM_027060|Btbd9|224671|BTB (POZ) domain containing 9	NM_172618|Btbd9|224671|BTB (POZ) domain containing 9
mm9_v1_chr9_+_72380046_72380064	0.00369127	AACCUGG	AK090370|Rfx7|319758|regulatory factor X, 7	NM_001033536|Rfx7|319758|regulatory factor X, 7	AK144999|Rfx7|319758|regulatory factor X, 7
mm9_v1_chr7_-_106976715_106976926	0.00322048	AACCUGG	BC116892|Neu3|50877|neuraminidase 3	BC116924|Neu3|50877|neuraminidase 3	AK050428|Neu3|50877|neuraminidase 3	AK134405|Neu3|50877|neuraminidase 3	AB026842|Neu3|50877|neuraminidase 3	NM_016720|Neu3|50877|neuraminidase 3
mm9_v1_chr10_+_127529818_127529845	0.00251384	AACCUGG	AK133149|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC048415|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	NM_054078|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr6_-_83781704_83781750	0.000917786	AACCUGG	AK140686|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK159287|Paip2b|232164|poly(A) binding protein interacting protein 2B	NM_146169|Paip2b|232164|poly(A) binding protein interacting protein 2B
