mm9_v1_chr13_+_98011057_98011069	0.683016	AAGGUGC	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr5_-_84846348_84846408	0.602464	AAGGUGC	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr8_+_46593141_46593271	0.409563	AAGGUGC	AK171632|Sorbs2|234214|sorbin and SH3 domain containing 2	NM_172752|Sorbs2|234214|sorbin and SH3 domain containing 2	AK139388|Sorbs2|234214|sorbin and SH3 domain containing 2	BC151038|Sorbs2|234214|sorbin and SH3 domain containing 2	BC172140|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr6_-_134742645_134742743	0.249236	AAGGUGC	AK144800|Dusp16|70686|dual specificity phosphatase 16	NM_001048054|Dusp16|70686|dual specificity phosphatase 16	NM_130447|Dusp16|70686|dual specificity phosphatase 16
mm9_v1_chr7_+_108257288_108257396	0.231901	AAGGUGC	AK141949|Fchsd2|207278|FCH and double SH3 domains 2	NM_001146010|Fchsd2|207278|FCH and double SH3 domains 2	NM_199012|Fchsd2|207278|FCH and double SH3 domains 2	BC016532|Fchsd2|207278|FCH and double SH3 domains 2	AK140322|Fchsd2|207278|FCH and double SH3 domains 2	AK157054|Fchsd2|207278|FCH and double SH3 domains 2	AK156841|Fchsd2|207278|FCH and double SH3 domains 2	BC060647|Fchsd2|207278|FCH and double SH3 domains 2	AK165341|Fchsd2|207278|FCH and double SH3 domains 2	AK122368|Fchsd2|207278|FCH and double SH3 domains 2
mm9_v1_chr15_+_78813475_78813522	0.223581	AAGGUGC	NM_001024716|Triobp|110253|TRIO and F-actin binding protein	BC053329|Triobp|110253|TRIO and F-actin binding protein	AK085512|Triobp|110253|TRIO and F-actin binding protein
mm9_v1_chr16_-_52453104_52453136	0.216199	AAGGUGC	AK053201|Alcam|11658|activated leukocyte cell adhesion molecule	AK030851|Alcam|11658|activated leukocyte cell adhesion molecule	NM_009655|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr11_+_32355355_32355458	0.211065	AAGGUGC	AK076953|Ubtd2|327900|ubiquitin domain containing 2	BC057026|Ubtd2|327900|ubiquitin domain containing 2	NM_173784|Ubtd2|327900|ubiquitin domain containing 2
mm9_v1_chr5_-_73647856_73647874	0.195717	AAGGUGC	AK164590|Fryl|72313|furry homolog-like (Drosophila)	NM_028194|Fryl|72313|furry homolog-like (Drosophila)
mm9_v1_chr2_+_163899842_163899948	0.193013	AAGGUGC	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr6_+_133985717_133985901	0.190361	AAGGUGC	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr6_-_72849854_72850037	0.187539	AAGGUGC	NM_019715|Kcmf1|74287|potassium channel modulatory factor 1
mm9_v1_chr3_+_96500294_96500403	0.177491	AAGGUGC	NM_146135|Pias3|229615|protein inhibitor of activated STAT 3	AK040619|Pias3|229615|protein inhibitor of activated STAT 3	AK077551|Pias3|229615|protein inhibitor of activated STAT 3	AK085503|Pias3|229615|protein inhibitor of activated STAT 3	BC023128|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr16_+_24393435_24393655	0.176332	AAGGUGC	NM_178665|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK168431|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK085626|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051345|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045288|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045341|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051937|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK086307|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK169780|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr18_+_76401531_76401583	0.174297	AAGGUGC	BC021342|Smad2|17126|MAD homolog 2 (Drosophila)	AK007817|Smad2|17126|MAD homolog 2 (Drosophila)	NM_010754|Smad2|17126|MAD homolog 2 (Drosophila)
mm9_v1_chr17_+_78599556_78599594	0.155977	AAGGUGC	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr2_-_24775083_24775154	0.154576	AAGGUGC	AK054555|Ehmt1|77683|euchromatic histone methyltransferase 1	AK052174|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001012518|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109686|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109687|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_172545|Ehmt1|77683|euchromatic histone methyltransferase 1	AK084994|Ehmt1|77683|euchromatic histone methyltransferase 1	AK043898|Ehmt1|77683|euchromatic histone methyltransferase 1	AK082062|Ehmt1|77683|euchromatic histone methyltransferase 1	AB205007|Ehmt1|77683|euchromatic histone methyltransferase 1
mm9_v1_chr19_-_60019520_60019556	0.154573	AAGGUGC	AK015534|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001164367|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr12_-_15823590_15823683	0.150752	AAGGUGC	NM_144551|Trib2|217410|tribbles homolog 2 (Drosophila)	AK144192|Trib2|217410|tribbles homolog 2 (Drosophila)
mm9_v1_chr3_+_105255247_105255337	0.146393	AAGGUGC	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr11_+_77499638_77499656	0.141334	AAGGUGC	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr6_+_140572056_140572226	0.138605	AAGGUGC	NM_001005605|Aebp2|11569|AE binding protein 2
mm9_v1_chr3_-_84024766_84024812	0.13687	AAGGUGC	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr11_+_29273673_29273774	0.136212	AAGGUGC	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr3_-_146475652_146475990	0.127891	AAGGUGC	AK193506|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK204631|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK216103|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	J02626|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	BC054533|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK048319|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_011100|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK031441|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr13_-_48966240_48966272	0.127834	AAGGUGC	BC051633|Phf2|18676|PHD finger protein 2	AF043726|Phf2|18676|PHD finger protein 2	NM_011078|Phf2|18676|PHD finger protein 2
mm9_v1_chr8_-_36558514_36558598	0.124607	AAGGUGC	AK165026|Eri1|67276|exoribonuclease 1	BC046412|Eri1|67276|exoribonuclease 1	AK172005|Eri1|67276|exoribonuclease 1	AK144223|Eri1|67276|exoribonuclease 1	AK014041|Eri1|67276|exoribonuclease 1	AK014410|Eri1|67276|exoribonuclease 1	NM_026067|Eri1|67276|exoribonuclease 1
mm9_v1_chr9_+_121669121_121669172	0.124367	AAGGUGC	NM_001166644|Zfp651|270210|zinc finger protein 651
mm9_v1_chr12_+_3426883_3427022	0.122413	AAGGUGC	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr1_-_137481914_137481937	0.120316	AAGGUGC	NM_173437|Nav1|215690|neuron navigator 1
mm9_v1_chr8_+_109817355_109817761	0.113827	AAGGUGC	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr4_+_105988790_105988840	0.109931	AAGGUGC	NM_183225|Usp24|329908|ubiquitin specific peptidase 24	AK045043|Usp24|329908|ubiquitin specific peptidase 24
mm9_v1_chr1_-_163061538_163061643	0.109031	AAGGUGC	BC060183|Klhl20|226541|kelch-like 20 (Drosophila)	AK053102|Klhl20|226541|kelch-like 20 (Drosophila)	AK053371|Klhl20|226541|kelch-like 20 (Drosophila)	AK054169|Klhl20|226541|kelch-like 20 (Drosophila)	BC019571|Klhl20|226541|kelch-like 20 (Drosophila)	AK220547|Klhl20|226541|kelch-like 20 (Drosophila)	NM_001039482|Klhl20|226541|kelch-like 20 (Drosophila)
mm9_v1_chr7_-_81158546_81158567	0.106176	AAGGUGC	X83562|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	BC096546|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	NM_009181|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm9_v1_chr5_+_97426665_97426877	0.105955	AAGGUGC	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr3_-_30868320_30868353	0.0994618	AAGGUGC	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr3_-_9610062_9610137	0.0960999	AAGGUGC	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr3_-_38383688_38383798	0.0959847	AAGGUGC	AK129484|Ankrd50|99696|ankyrin repeat domain 50	NM_001167883|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr3_+_96500993_96501007	0.09404	AAGGUGC	NM_001165949|Pias3|229615|protein inhibitor of activated STAT 3	NM_018812|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr14_+_117324518_117324572	0.0883335	AAGGUGC	AK164668|Gpc6|23888|glypican 6	AK135442|Gpc6|23888|glypican 6	NM_001079844|Gpc6|23888|glypican 6	NM_011821|Gpc6|23888|glypican 6
mm9_v1_chr1_+_19198994_19199078	0.0882631	AAGGUGC	AK017373|Tcfap2b|21419|transcription factor AP-2 beta	NM_009334|Tcfap2b|21419|transcription factor AP-2 beta	AK005128|Tcfap2b|21419|transcription factor AP-2 beta	AK028906|Tcfap2b|21419|transcription factor AP-2 beta	X78197|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr13_+_9275741_9275783	0.0880394	AAGGUGC	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr2_+_65683823_65683911	0.0824643	AAGGUGC	NM_153409|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	NM_178634|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	EF210820|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK039150|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK082649|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK020730|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	AK080761|Csrnp3|77771|cysteine-serine-rich nuclear protein 3	BC055701|Csrnp3|77771|cysteine-serine-rich nuclear protein 3
mm9_v1_chr4_-_129349948_129350020	0.0802876	AAGGUGC	AK084212|Kpna6|16650|karyopherin (importin) alpha 6	AK046371|Kpna6|16650|karyopherin (importin) alpha 6	AK154882|Kpna6|16650|karyopherin (importin) alpha 6	NM_008468|Kpna6|16650|karyopherin (importin) alpha 6
mm9_v1_chr2_+_156246644_156246847	0.0761095	AAGGUGC	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr4_-_125933482_125933589	0.0726601	AAGGUGC	BC023677|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	BC023774|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	AK151613|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_001145970|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_144941|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1
mm9_v1_chr4_+_100449274_100449299	0.0692596	AAGGUGC	AK080923|Cachd1|320508|cache domain containing 1	BC058676|Cachd1|320508|cache domain containing 1	NM_198037|Cachd1|320508|cache domain containing 1
mm9_v1_chr13_-_41582649_41582707	0.0690179	AAGGUGC	BC053713|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK083374|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK030985|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AF009366|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_001111324|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr9_+_118387306_118387461	0.067941	AAGGUGC	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr9_-_53344748_53344787	0.0646168	AAGGUGC	AK031702|Atm|11920|ataxia telangiectasia mutated homolog (human)	NM_007499|Atm|11920|ataxia telangiectasia mutated homolog (human)	AK139863|Atm|11920|ataxia telangiectasia mutated homolog (human)
mm9_v1_chr7_-_51809255_51809350	0.0607701	AAGGUGC	AK134489|Nr1h2|22260|nuclear receptor subfamily 1, group H, member 2	BC066025|Nr1h2|22260|nuclear receptor subfamily 1, group H, member 2	NM_009473|Nr1h2|22260|nuclear receptor subfamily 1, group H, member 2	AK077620|Nr1h2|22260|nuclear receptor subfamily 1, group H, member 2	AK156777|Nr1h2|22260|nuclear receptor subfamily 1, group H, member 2	AK054508|Nr1h2|22260|nuclear receptor subfamily 1, group H, member 2
mm9_v1_chr13_-_41454358_41454379	0.0605476	AAGGUGC	AK054179|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK033729|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_017464|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr12_-_85559793_85559836	0.0597182	AAGGUGC	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr2_+_179759610_179759731	0.0529311	AAGGUGC	BC040823|Lsm14b|241846|LSM14 homolog B (SCD6, S. cerevisiae)	NM_177727|Lsm14b|241846|LSM14 homolog B (SCD6, S. cerevisiae)
mm9_v1_chr6_-_92431385_92431385	0.0522474	AAGGUGC	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr1_-_99992145_99992228	0.0521016	AAGGUGC	AK051649|Pam|18484|peptidylglycine alpha-amidating monooxygenase	NM_013626|Pam|18484|peptidylglycine alpha-amidating monooxygenase	AK141291|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr7_-_130643962_130644139	0.0506345	AAGGUGC	AK034954|Zkscan2|210162|zinc finger with KRAB and SCAN domains 2	NM_001081329|Zkscan2|210162|zinc finger with KRAB and SCAN domains 2	AK080486|Zkscan2|210162|zinc finger with KRAB and SCAN domains 2
mm9_v1_chr2_-_65405546_65405588	0.0506053	AAGGUGC	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr14_+_67530044_67530096	0.0475339	AAGGUGC	AK043910|Pnma2|239157|paraneoplastic antigen MA2	NM_175498|Pnma2|239157|paraneoplastic antigen MA2	AK220357|Pnma2|239157|paraneoplastic antigen MA2	AK043718|Pnma2|239157|paraneoplastic antigen MA2
mm9_v1_chr18_+_66618186_66618270	0.0473616	AAGGUGC	AK143990|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK169914|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK043856|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK088556|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AB041230|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	NM_021451|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	BC050821|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1
mm9_v1_chr4_-_119165183_119165252	0.0452454	AAGGUGC	BC057371|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK163360|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK047164|Rimkla|194237|ribosomal modification protein rimK-like family member A	NM_177572|Rimkla|194237|ribosomal modification protein rimK-like family member A
mm9_v1_chr5_+_98683202_98683430	0.0436874	AAGGUGC	AK028894|Fgf5|14176|fibroblast growth factor 5	NM_010203|Fgf5|14176|fibroblast growth factor 5	BC071227|Fgf5|14176|fibroblast growth factor 5	AK028694|Fgf5|14176|fibroblast growth factor 5	AB016516|Fgf5|14176|fibroblast growth factor 5	M30643|Fgf5|14176|fibroblast growth factor 5
mm9_v1_chr19_+_48280514_48280661	0.0430888	AAGGUGC	AF276314|Sorcs3|66673|sortilin-related VPS10 domain containing receptor 3	NM_025696|Sorcs3|66673|sortilin-related VPS10 domain containing receptor 3	AK158805|Sorcs3|66673|sortilin-related VPS10 domain containing receptor 3
mm9_v1_chrX_-_71211653_71211712	0.0420353	AAGGUGC	BC053742|Hcfc1|15161|host cell factor C1	NM_008224|Hcfc1|15161|host cell factor C1	AK140197|Hcfc1|15161|host cell factor C1	AK088827|Hcfc1|15161|host cell factor C1
mm9_v1_chr7_-_133646767_133646989	0.0418153	AAGGUGC	BC054483|Atxn2l|233871|ataxin 2-like	NM_183020|Atxn2l|233871|ataxin 2-like	AK155062|Atxn2l|233871|ataxin 2-like	AK084800|Atxn2l|233871|ataxin 2-like
mm9_v1_chr18_+_32227377_32227461	0.0411795	AAGGUGC	NM_173441|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK033013|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK041691|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK028247|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK163972|Iws1|73473|IWS1 homolog (S. cerevisiae)	BC068184|Iws1|73473|IWS1 homolog (S. cerevisiae)
mm9_v1_chr2_+_117937623_117937666	0.0407541	AAGGUGC	AK080686|Thbs1|21825|thrombospondin 1	AK145202|Thbs1|21825|thrombospondin 1	AK163092|Thbs1|21825|thrombospondin 1	M87276|Thbs1|21825|thrombospondin 1	BC050917|Thbs1|21825|thrombospondin 1	NM_011580|Thbs1|21825|thrombospondin 1	BC020435|Thbs1|21825|thrombospondin 1	BC042422|Thbs1|21825|thrombospondin 1
mm9_v1_chr5_+_143178045_143178121	0.0405444	AAGGUGC	NM_146257|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4	BC025599|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4
mm9_v1_chr8_+_47825098_47825208	0.0403409	AAGGUGC	NM_008391|Irf2|16363|interferon regulatory factor 2	AK087926|Irf2|16363|interferon regulatory factor 2	AK155025|Irf2|16363|interferon regulatory factor 2	BC110666|Irf2|16363|interferon regulatory factor 2	BC006577|Irf2|16363|interferon regulatory factor 2	AK036652|Irf2|16363|interferon regulatory factor 2	J03168|Irf2|16363|interferon regulatory factor 2
mm9_v1_chr9_-_45636638_45636736	0.0403201	AAGGUGC	AK158671|Cep164|214552|centrosomal protein 164	NM_001081373|Cep164|214552|centrosomal protein 164
mm9_v1_chr3_+_97817440_97817471	0.0390469	AAGGUGC	AK157200|Notch2|18129|Notch gene homolog 2 (Drosophila)	D32210|Notch2|18129|Notch gene homolog 2 (Drosophila)	NM_010928|Notch2|18129|Notch gene homolog 2 (Drosophila)
mm9_v1_chr2_+_37298785_37298902	0.0377755	AAGGUGC	NM_146121|Rabgap1|227800|RAB GTPase activating protein 1	AK031315|Rabgap1|227800|RAB GTPase activating protein 1	AK021286|Rabgap1|227800|RAB GTPase activating protein 1	BC138337|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chrX_+_69062091_69062188	0.0376135	AAGGUGC	NM_001081356|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049488|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK138582|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK011632|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK008848|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK045401|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK164163|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AJ748652|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC094639|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049296|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC028317|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
mm9_v1_chr7_+_56501558_56501558	0.0373153	AAGGUGC	AK039374|Nav2|78286|neuron navigator 2	NM_175272|Nav2|78286|neuron navigator 2
mm9_v1_chr10_+_87323855_87324094	0.036947	AAGGUGC	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr14_-_65568677_65568719	0.0365116	AAGGUGC	AK089782|Hmbox1|219150|homeobox containing 1	AK161592|Hmbox1|219150|homeobox containing 1	NM_177338|Hmbox1|219150|homeobox containing 1	BC051457|Hmbox1|219150|homeobox containing 1	AK052729|Hmbox1|219150|homeobox containing 1
mm9_v1_chr10_-_121063321_121063512	0.033693	AAGGUGC	NM_001081056|Xpot|73192|exportin, tRNA (nuclear export receptor for tRNAs)
mm9_v1_chr1_+_66221851_66221903	0.0332458	AAGGUGC	AK166380|Mtap2|17756|microtubule-associated protein 2	BC052446|Mtap2|17756|microtubule-associated protein 2	NM_001039934|Mtap2|17756|microtubule-associated protein 2	NM_008632|Mtap2|17756|microtubule-associated protein 2	BC150945|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr5_+_75971011_75971052	0.0328075	AAGGUGC	NM_001122733|Kit|16590|kit oncogene	NM_021099|Kit|16590|kit oncogene	AK046795|Kit|16590|kit oncogene	AK047010|Kit|16590|kit oncogene	BC026713|Kit|16590|kit oncogene	BC075716|Kit|16590|kit oncogene	BC052457|Kit|16590|kit oncogene	Y00864|Kit|16590|kit oncogene	AY536430|Kit|16590|kit oncogene	AY536431|Kit|16590|kit oncogene
mm9_v1_chr11_-_90499370_90499421	0.0325319	AAGGUGC	BC032881|Stxbp4|20913|syntaxin binding protein 4	AK012293|Stxbp4|20913|syntaxin binding protein 4	AK032998|Stxbp4|20913|syntaxin binding protein 4	AK049001|Stxbp4|20913|syntaxin binding protein 4	NM_011505|Stxbp4|20913|syntaxin binding protein 4
mm9_v1_chr7_+_56214442_56214485	0.032369	AAGGUGC	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr11_+_59120429_59120467	0.0321637	AAGGUGC	AK087490|Wnt9a|216795|wingless-type MMTV integration site 9A	NM_139298|Wnt9a|216795|wingless-type MMTV integration site 9A	BC066165|Wnt9a|216795|wingless-type MMTV integration site 9A	AB072311|Wnt9a|216795|wingless-type MMTV integration site 9A
mm9_v1_chr1_-_43155380_43155481	0.0318455	AAGGUGC	BC138866|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC138867|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	BC072608|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	NM_001013025|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1	AK051333|Tgfbrap1|73122|transforming growth factor, beta receptor associated protein 1
mm9_v1_chr5_-_29704889_29704943	0.0313723	AAGGUGC	NM_020295|Lmbr1|56873|limb region 1
mm9_v1_chr13_-_46060325_46060353	0.0298355	AAGGUGC	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr10_+_57206184_57206291	0.0293859	AAGGUGC	AK053976|Hsf2|15500|heat shock factor 2	NM_008297|Hsf2|15500|heat shock factor 2	BC018414|Hsf2|15500|heat shock factor 2	AK052270|Hsf2|15500|heat shock factor 2
mm9_v1_chr5_-_68238654_68238670	0.0293029	AAGGUGC	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr1_-_33726582_33726638	0.0283756	AAGGUGC	D17385|Prim2|19076|DNA primase, p58 subunit	AK153970|Prim2|19076|DNA primase, p58 subunit	BC019500|Prim2|19076|DNA primase, p58 subunit	D13545|Prim2|19076|DNA primase, p58 subunit	NM_008922|Prim2|19076|DNA primase, p58 subunit	AK076095|Prim2|19076|DNA primase, p58 subunit	AK077760|Prim2|19076|DNA primase, p58 subunit	AK168246|Prim2|19076|DNA primase, p58 subunit
mm9_v1_chr2_+_143371807_143372226	0.0278134	AAGGUGC	AK158598|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK133620|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	NM_008792|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC057348|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK158493|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK161585|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	BC052013|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AK039783|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	M55669|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483512|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2	AF483513|Pcsk2|18549|proprotein convertase subtilisin/kexin type 2
mm9_v1_chr2_-_34769479_34769559	0.0274789	AAGGUGC	BC027776|Phf19|74016|PHD finger protein 19	AK014380|Phf19|74016|PHD finger protein 19	NM_028716|Phf19|74016|PHD finger protein 19	AK014030|Phf19|74016|PHD finger protein 19
mm9_v1_chr14_+_34767188_34767245	0.0269953	AAGGUGC	BC083133|Rbp3|19661|retinol binding protein 3, interstitial	BC017610|Rbp3|19661|retinol binding protein 3, interstitial	NM_015745|Rbp3|19661|retinol binding protein 3, interstitial	BC040282|Rbp3|19661|retinol binding protein 3, interstitial	BC042480|Rbp3|19661|retinol binding protein 3, interstitial
mm9_v1_chr9_-_52487410_52487541	0.0265487	AAGGUGC	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr13_-_17896909_17896930	0.0264101	AAGGUGC	AK173265|Cdk13|69562|cyclin-dependent kinase 13	NM_001081058|Cdk13|69562|cyclin-dependent kinase 13	NM_027118|Cdk13|69562|cyclin-dependent kinase 13
mm9_v1_chr1_-_153937364_153937449	0.0262964	AAGGUGC	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr8_+_72315061_72315156	0.0261497	AAGGUGC	BC138721|Atp13a1|170759|ATPase type 13A1	BC138722|Atp13a1|170759|ATPase type 13A1	NM_133224|Atp13a1|170759|ATPase type 13A1	AB035381|Atp13a1|170759|ATPase type 13A1	AK052057|Atp13a1|170759|ATPase type 13A1	BC078635|Atp13a1|170759|ATPase type 13A1
mm9_v1_chr19_-_60866516_60866617	0.0256528	AAGGUGC	AK172899|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	U14172|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK149482|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK161634|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145629|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK082006|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK087340|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK167010|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK043609|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	NM_010123|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A	AK145132|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A
mm9_v1_chr6_-_92656148_92656177	0.0251977	AAGGUGC	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr1_+_74708306_74708411	0.0248973	AAGGUGC	BC085151|Ttll4|67534|tubulin tyrosine ligase-like family, member 4	NM_001014974|Ttll4|67534|tubulin tyrosine ligase-like family, member 4
mm9_v1_chr6_+_114081227_114081234	0.0248918	AAGGUGC	AK140423|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK053078|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	NM_172890|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr3_+_88489708_88489765	0.0245771	AAGGUGC	NM_028814|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK170490|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK038617|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	BC006621|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK012969|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK173057|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK083018|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK164337|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene	AK020778|2810403A07Rik|74200|RIKEN cDNA 2810403A07 gene
mm9_v1_chr1_-_55084321_55084327	0.0243851	AAGGUGC	NM_031179|Sf3b1|81898|splicing factor 3b, subunit 1	AB037890|Sf3b1|81898|splicing factor 3b, subunit 1	AK165992|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr6_+_51494521_51494550	0.0241247	AAGGUGC	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chrX_+_102275071_102275146	0.0241005	AAGGUGC	AK007655|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK030507|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK076889|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	NM_026312|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC035042|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	AK011610|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC061070|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene	BC044719|2610029G23Rik|67683|RIKEN cDNA 2610029G23 gene
mm9_v1_chr4_+_6118247_6118251	0.0239172	AAGGUGC	AK028268|Ubxn2b|68053|UBX domain protein 2B	AK018273|Ubxn2b|68053|UBX domain protein 2B	AK032332|Ubxn2b|68053|UBX domain protein 2B	BC076632|Ubxn2b|68053|UBX domain protein 2B	NM_026534|Ubxn2b|68053|UBX domain protein 2B
mm9_v1_chr7_+_132588189_132588205	0.0237515	AAGGUGC	AK014006|Jmjd5|77035|jumonji domain containing 5	NM_029842|Jmjd5|77035|jumonji domain containing 5	BC024807|Jmjd5|77035|jumonji domain containing 5
mm9_v1_chr5_-_129459236_129459360	0.0232921	AAGGUGC	NM_001081388|Rimbp2|231760|RIMS binding protein 2	AK044685|Rimbp2|231760|RIMS binding protein 2
mm9_v1_chr6_-_39675456_39675512	0.0232272	AAGGUGC	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr15_-_91022198_91022269	0.0231556	AAGGUGC	AK082588|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	AK051445|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	Z48670|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	NM_011994|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2
mm9_v1_chr16_-_22163264_22163371	0.0231461	AAGGUGC	NM_183029|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2
mm9_v1_chr1_+_81073778_81073898	0.022919	AAGGUGC	AK034747|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene	BC082310|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene	NM_172849|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene	AK137094|9430031J16Rik|241134|RIKEN cDNA 9430031J16 gene
mm9_v1_chr15_-_56526052_56526100	0.022714	AAGGUGC	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr10_+_61143056_61143106	0.0223786	AAGGUGC	AK157843|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK168175|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK159239|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	NM_009120|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	BC005549|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	L20294|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)
mm9_v1_chr7_+_31076771_31076772	0.0223125	AAGGUGC	NM_001081114|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr1_-_65225583_65225732	0.0216138	AAGGUGC	AK087063|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK151212|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK149019|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK159173|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK160896|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK167583|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK167158|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK168832|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	BC088986|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	NM_010497|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble
mm9_v1_chr6_-_54516326_54516404	0.0205282	AAGGUGC	BC023889|Scrn1|69938|secernin 1	AK089968|Scrn1|69938|secernin 1	AK129084|Scrn1|69938|secernin 1	AK082953|Scrn1|69938|secernin 1	NM_027268|Scrn1|69938|secernin 1	AK145904|Scrn1|69938|secernin 1	AK050481|Scrn1|69938|secernin 1	AK012765|Scrn1|69938|secernin 1	AK032573|Scrn1|69938|secernin 1
mm9_v1_chr1_-_3661578_3661628	0.0199674	AAGGUGC	AY534250|Xkr4|497097|X Kell blood group precursor related family member 4	NM_001011874|Xkr4|497097|X Kell blood group precursor related family member 4
mm9_v1_chr11_+_49016828_49017024	0.0195286	AAGGUGC	AK088060|Zfp62|22720|zinc finger protein 62	AK157730|Zfp62|22720|zinc finger protein 62	AK167091|Zfp62|22720|zinc finger protein 62	AK028351|Zfp62|22720|zinc finger protein 62	AK048619|Zfp62|22720|zinc finger protein 62	NM_001024846|Zfp62|22720|zinc finger protein 62	NM_009562|Zfp62|22720|zinc finger protein 62	AK154767|Zfp62|22720|zinc finger protein 62	AK079774|Zfp62|22720|zinc finger protein 62	AK165654|Zfp62|22720|zinc finger protein 62
mm9_v1_chr9_+_80012837_80012863	0.0192453	AAGGUGC	NM_001039546|Myo6|17920|myosin VI	AK053882|Myo6|17920|myosin VI
mm9_v1_chr11_+_106650565_106650638	0.0190635	AAGGUGC	NM_001166685|Ccdc45|320162|coiled-coil domain containing 45	NM_177088|Ccdc45|320162|coiled-coil domain containing 45	AK076400|Ccdc45|320162|coiled-coil domain containing 45	AK165351|Ccdc45|320162|coiled-coil domain containing 45	BC116308|Ccdc45|320162|coiled-coil domain containing 45	BC116309|Ccdc45|320162|coiled-coil domain containing 45	BC090675|Ccdc45|320162|coiled-coil domain containing 45	AK052705|Ccdc45|320162|coiled-coil domain containing 45
mm9_v1_chr4_-_43441988_43442007	0.0186848	AAGGUGC	BC172030|Fam166b|329831|family with sequence similarity 166, member B	AK029435|Fam166b|329831|family with sequence similarity 166, member B	AK053208|Fam166b|329831|family with sequence similarity 166, member B	NM_001162381|Fam166b|329831|family with sequence similarity 166, member B	NM_177377|Fam166b|329831|family with sequence similarity 166, member B
mm9_v1_chr4_-_115612507_115612530	0.0179023	AAGGUGC	BC050912|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AB037698|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AF448118|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	AK141654|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_001025567|Dmbx1|140477|diencephalon/mesencephalon homeobox 1	NM_130865|Dmbx1|140477|diencephalon/mesencephalon homeobox 1
mm9_v1_chr10_-_77707385_77707420	0.0173762	AAGGUGC	AK166500|Trappc10|216131|trafficking protein particle complex 10	NM_001081055|Trappc10|216131|trafficking protein particle complex 10
mm9_v1_chr12_-_4484059_4484074	0.0169499	AAGGUGC	NM_010881|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr3_-_35899453_35899599	0.0165218	AAGGUGC	AK178493|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK168589|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AF310338|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK032203|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK007782|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	BC021382|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	AK031072|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	NM_023644|Mccc1|72039|methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
mm9_v1_chr11_-_106474237_106474312	0.0161429	AAGGUGC	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chrX_+_70587906_70588053	0.0158453	AAGGUGC	NM_031494|Zfp275|27081|zinc finger protein 275	AK142957|Zfp275|27081|zinc finger protein 275	NM_001160229|Zfp275|27081|zinc finger protein 275	BC138002|Zfp275|27081|zinc finger protein 275	BC138003|Zfp275|27081|zinc finger protein 275
mm9_v1_chr9_-_65732843_65732979	0.0156582	AAGGUGC	AK078393|Trip4|56404|thyroid hormone receptor interactor 4	AK150752|Trip4|56404|thyroid hormone receptor interactor 4	BC021316|Trip4|56404|thyroid hormone receptor interactor 4	AK039024|Trip4|56404|thyroid hormone receptor interactor 4	AK146298|Trip4|56404|thyroid hormone receptor interactor 4	NM_001170907|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr9_-_65756482_65756602	0.015319	AAGGUGC	AF539614|Trip4|56404|thyroid hormone receptor interactor 4	AK016170|Trip4|56404|thyroid hormone receptor interactor 4	AK139423|Trip4|56404|thyroid hormone receptor interactor 4	AK166192|Trip4|56404|thyroid hormone receptor interactor 4	NM_019797|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr16_-_92697567_92697590	0.0152644	AAGGUGC	AK155262|Runx1|12394|runt related transcription factor 1	D26532|Runx1|12394|runt related transcription factor 1	NM_001111023|Runx1|12394|runt related transcription factor 1	NM_009821|Runx1|12394|runt related transcription factor 1
mm9_v1_chr11_-_100956699_100956725	0.014933	AAGGUGC	FJ937967|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	AB000121|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	BC030169|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	NM_008949|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	AK133462|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	FJ937966|Psmc3ip|19183|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm9_v1_chr10_+_43198945_43198945	0.0146337	AAGGUGC	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr1_-_191167231_191167231	0.014187	AAGGUGC	NM_001159850|Kcnk2|16526|potassium channel, subfamily K, member 2
mm9_v1_chr17_+_26339883_26339926	0.0138998	AAGGUGC	AK080707|Rgs11|50782|regulator of G-protein signaling 11	NM_001081069|Rgs11|50782|regulator of G-protein signaling 11	BC049910|Rgs11|50782|regulator of G-protein signaling 11
mm9_v1_chr2_+_153067186_153067388	0.0138617	AAGGUGC	NM_080463|Pofut1|140484|protein O-fucosyltransferase 1	BC046295|Pofut1|140484|protein O-fucosyltransferase 1	AK135635|Pofut1|140484|protein O-fucosyltransferase 1	AK044629|Pofut1|140484|protein O-fucosyltransferase 1	AF375885|Pofut1|140484|protein O-fucosyltransferase 1	AK037857|Pofut1|140484|protein O-fucosyltransferase 1	AK081059|Pofut1|140484|protein O-fucosyltransferase 1	AK132301|Pofut1|140484|protein O-fucosyltransferase 1	AK170038|Pofut1|140484|protein O-fucosyltransferase 1
mm9_v1_chr6_-_119988624_119988681	0.013805	AAGGUGC	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr4_-_15940946_15941025	0.0137372	AAGGUGC	AK053737|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	AK169678|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	AK148243|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	AK048731|Osgin2|209212|oxidative stress induced growth inhibitor family member 2	NM_145950|Osgin2|209212|oxidative stress induced growth inhibitor family member 2
mm9_v1_chr2_-_153067043_153067211	0.0132568	AAGGUGC	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr3_+_88140181_88140184	0.013039	AAGGUGC	AK143911|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_178246|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr9_-_56265833_56265857	0.0127141	AAGGUGC	AK035440|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	AK048912|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	NM_172924|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene
mm9_v1_chr12_+_74224693_74224793	0.0122612	AAGGUGC	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr5_+_77403725_77403746	0.0118207	AAGGUGC	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr18_+_9957913_9958236	0.0114446	AAGGUGC	AK168619|Thoc1|225160|THO complex 1	BC024951|Thoc1|225160|THO complex 1	AK167374|Thoc1|225160|THO complex 1	AK042867|Thoc1|225160|THO complex 1	AK139307|Thoc1|225160|THO complex 1	AK013983|Thoc1|225160|THO complex 1	AK031785|Thoc1|225160|THO complex 1	AK032200|Thoc1|225160|THO complex 1	NM_153552|Thoc1|225160|THO complex 1	AK052835|Thoc1|225160|THO complex 1	AK082591|Thoc1|225160|THO complex 1
mm9_v1_chr5_+_137443701_137443749	0.0113774	AAGGUGC	AK008683|Cldn15|60363|claudin 15	NM_021719|Cldn15|60363|claudin 15	BC023428|Cldn15|60363|claudin 15
mm9_v1_chr15_-_83555335_83555492	0.0110564	AAGGUGC	AF276425|Scube1|64706|signal peptide, CUB domain, EGF-like 1	BC066066|Scube1|64706|signal peptide, CUB domain, EGF-like 1	BC080278|Scube1|64706|signal peptide, CUB domain, EGF-like 1	AK041590|Scube1|64706|signal peptide, CUB domain, EGF-like 1	NM_022723|Scube1|64706|signal peptide, CUB domain, EGF-like 1
mm9_v1_chr4_-_139388882_139388882	0.0108812	AAGGUGC	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr18_-_14841294_14841422	0.0106423	AAGGUGC	AK083887|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161369|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161370|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161371|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_009280|Ss18|268996|synovial sarcoma translocation, Chromosome 18	X93357|Ss18|268996|synovial sarcoma translocation, Chromosome 18
mm9_v1_chr2_+_154959216_154959300	0.0104396	AAGGUGC	NM_008395|Itch|16396|itchy, E3 ubiquitin protein ligase	AK082003|Itch|16396|itchy, E3 ubiquitin protein ligase	AK163006|Itch|16396|itchy, E3 ubiquitin protein ligase	AK141800|Itch|16396|itchy, E3 ubiquitin protein ligase	AK037940|Itch|16396|itchy, E3 ubiquitin protein ligase	BC062934|Itch|16396|itchy, E3 ubiquitin protein ligase	AK020167|Itch|16396|itchy, E3 ubiquitin protein ligase	AK220164|Itch|16396|itchy, E3 ubiquitin protein ligase	AK048303|Itch|16396|itchy, E3 ubiquitin protein ligase	BC064678|Itch|16396|itchy, E3 ubiquitin protein ligase	AF037454|Itch|16396|itchy, E3 ubiquitin protein ligase
mm9_v1_chr3_+_7503409_7503519	0.0101962	AAGGUGC	NM_173181|Fam164a|67306|family with sequence similarity 164, member A	BC087731|Fam164a|67306|family with sequence similarity 164, member A	AK083941|Fam164a|67306|family with sequence similarity 164, member A	AK170609|Fam164a|67306|family with sequence similarity 164, member A	AK085187|Fam164a|67306|family with sequence similarity 164, member A	AK014202|Fam164a|67306|family with sequence similarity 164, member A	BC044809|Fam164a|67306|family with sequence similarity 164, member A
mm9_v1_chr11_+_84693721_84693889	0.0100872	AAGGUGC	BC060115|Myo19|66196|myosin XIX	NM_025414|Myo19|66196|myosin XIX	AK080117|Myo19|66196|myosin XIX	AK053237|Myo19|66196|myosin XIX	AK053033|Myo19|66196|myosin XIX
mm9_v1_chr1_+_70772288_70772496	0.009899	AAGGUGC	BC094541|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	NM_177164|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK083856|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	BC064448|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK080585|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like
mm9_v1_chr2_+_75497282_75497379	0.00973749	AAGGUGC	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr6_-_119280616_119280791	0.00966114	AAGGUGC	AK039006|Lrtm2|211187|leucine-rich repeats and transmembrane domains 2	AK045494|Lrtm2|211187|leucine-rich repeats and transmembrane domains 2	BC058944|Lrtm2|211187|leucine-rich repeats and transmembrane domains 2	NM_172492|Lrtm2|211187|leucine-rich repeats and transmembrane domains 2
mm9_v1_chr1_-_132994093_132994119	0.00943498	AAGGUGC	X76850|Mapkapk2|17164|MAP kinase-activated protein kinase 2	BC063064|Mapkapk2|17164|MAP kinase-activated protein kinase 2	NM_008551|Mapkapk2|17164|MAP kinase-activated protein kinase 2
mm9_v1_chr7_-_148615247_148615354	0.00903088	AAGGUGC	AF243130|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK005092|Cend1|57754|cell cycle exit and neuronal differentiation 1	BC023032|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK079045|Cend1|57754|cell cycle exit and neuronal differentiation 1	NM_021316|Cend1|57754|cell cycle exit and neuronal differentiation 1
mm9_v1_chr7_-_13404178_13404219	0.00839045	AAGGUGC	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr6_+_86992796_86992906	0.00837439	AAGGUGC	AK087173|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	NM_013528|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK019852|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK039792|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC050762|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AF334736|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC010516|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr15_+_8059306_8059370	0.00781004	AAGGUGC	NM_133227|Nup155|170762|nucleoporin 155	AK044109|Nup155|170762|nucleoporin 155	AF322375|Nup155|170762|nucleoporin 155	AK045334|Nup155|170762|nucleoporin 155	AK145717|Nup155|170762|nucleoporin 155	AK086426|Nup155|170762|nucleoporin 155	AK036575|Nup155|170762|nucleoporin 155	AK129217|Nup155|170762|nucleoporin 155	BC050919|Nup155|170762|nucleoporin 155
mm9_v1_chr9_-_113935832_113935880	0.00736701	AAGGUGC	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chrX_+_109714134_109714134	0.00722982	AAGGUGC	AK038956|Zfp711|245595|zinc finger protein 711	NM_177747|Zfp711|245595|zinc finger protein 711
mm9_v1_chr9_-_35007458_35007549	0.00722621	AAGGUGC	AF378130|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK168494|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK036431|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	AK151117|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_001177847|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_001177846|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	NM_054096|Tirap|117149|toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
mm9_v1_chrX_-_141921588_141921636	0.00716576	AAGGUGC	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr18_-_46901117_46901234	0.00676987	AAGGUGC	BC070470|Atg12|67526|autophagy-related 12 (yeast)	AB066216|Atg12|67526|autophagy-related 12 (yeast)	AK167027|Atg12|67526|autophagy-related 12 (yeast)	AK008698|Atg12|67526|autophagy-related 12 (yeast)	AK016474|Atg12|67526|autophagy-related 12 (yeast)	AK039278|Atg12|67526|autophagy-related 12 (yeast)	AK039546|Atg12|67526|autophagy-related 12 (yeast)	AK005405|Atg12|67526|autophagy-related 12 (yeast)	NM_026217|Atg12|67526|autophagy-related 12 (yeast)
mm9_v1_chr5_+_31191349_31191378	0.00675261	AAGGUGC	BC057349|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867034|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867035|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867036|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867037|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867038|Agbl5|231093|ATP/GTP binding protein-like 5	NM_001048192|Agbl5|231093|ATP/GTP binding protein-like 5
mm9_v1_chr8_+_91045232_91045286	0.00668708	AAGGUGC	AK166564|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	NM_027280|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK076164|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK082367|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	BC034838|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr6_+_86354212_86354404	0.0065607	AAGGUGC	NM_001164078|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_001164079|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_011585|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK144222|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK088486|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC023813|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC046812|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC027826|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	U55862|Tia1|21841|cytotoxic granule-associated RNA binding protein 1
mm9_v1_chr16_+_32332294_32332380	0.00653515	AAGGUGC	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr3_+_107989221_107989318	0.00636564	AAGGUGC	AK173118|Amigo1|229715|adhesion molecule with Ig like domain 1	NM_001004293|Amigo1|229715|adhesion molecule with Ig like domain 1	NM_146137|Amigo1|229715|adhesion molecule with Ig like domain 1	BC022907|Amigo1|229715|adhesion molecule with Ig like domain 1	AK035960|Amigo1|229715|adhesion molecule with Ig like domain 1	BC010598|Amigo1|229715|adhesion molecule with Ig like domain 1
mm9_v1_chr5_+_73039034_73039056	0.00621355	AAGGUGC	AK075654|Nipal1|70701|NIPA-like domain containing 1	NM_001081205|Nipal1|70701|NIPA-like domain containing 1
mm9_v1_chr10_+_68675404_68675423	0.00588916	AAGGUGC	AK034826|Rhobtb1|69288|Rho-related BTB domain containing 1	NM_001081347|Rhobtb1|69288|Rho-related BTB domain containing 1	BC099973|Rhobtb1|69288|Rho-related BTB domain containing 1
mm9_v1_chr15_+_86044834_86044934	0.0058099	AAGGUGC	AK155770|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154602|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154226|Tbc1d22a|223754|TBC1 domain family, member 22a	AK039627|Tbc1d22a|223754|TBC1 domain family, member 22a	AK155459|Tbc1d22a|223754|TBC1 domain family, member 22a	AK146872|Tbc1d22a|223754|TBC1 domain family, member 22a	BC066009|Tbc1d22a|223754|TBC1 domain family, member 22a	NM_145476|Tbc1d22a|223754|TBC1 domain family, member 22a
mm9_v1_chr17_+_87506971_87507037	0.00550493	AAGGUGC	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr10_-_18735154_18735215	0.00530116	AAGGUGC	AK153238|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK088297|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK151921|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC050259|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC054806|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC060221|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_009397|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr4_-_134989653_134989790	0.00518326	AAGGUGC	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr16_-_85901362_85901374	0.00511729	AAGGUGC	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr6_-_121423682_121423717	0.00483212	AAGGUGC	AK122446|Iqsec3|243621|IQ motif and Sec7 domain 3	AK147268|Iqsec3|243621|IQ motif and Sec7 domain 3	AK169437|Iqsec3|243621|IQ motif and Sec7 domain 3	NM_001033354|Iqsec3|243621|IQ motif and Sec7 domain 3
mm9_v1_chr11_-_46125777_46125868	0.00472408	AAGGUGC	AK018280|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AF334144|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK030397|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147971|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	BC056974|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147586|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	NM_133769|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2
mm9_v1_chr16_+_4886183_4886360	0.00465621	AAGGUGC	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr6_+_51473868_51474033	0.00440827	AAGGUGC	AK150704|Snx10|71982|sorting nexin 10	AK150999|Snx10|71982|sorting nexin 10	AK151320|Snx10|71982|sorting nexin 10	AK151520|Snx10|71982|sorting nexin 10	AK153127|Snx10|71982|sorting nexin 10	NM_001127349|Snx10|71982|sorting nexin 10	AK152949|Snx10|71982|sorting nexin 10	AK152825|Snx10|71982|sorting nexin 10	AK153356|Snx10|71982|sorting nexin 10	AK010399|Snx10|71982|sorting nexin 10	AK169110|Snx10|71982|sorting nexin 10	BC010334|Snx10|71982|sorting nexin 10	AK042505|Snx10|71982|sorting nexin 10	AK150878|Snx10|71982|sorting nexin 10
mm9_v1_chr1_+_52176281_52176465	0.00424418	AAGGUGC	AK039458|Stat1|20846|signal transducer and activator of transcription 1	NM_009283|Stat1|20846|signal transducer and activator of transcription 1	AK159887|Stat1|20846|signal transducer and activator of transcription 1	AK082706|Stat1|20846|signal transducer and activator of transcription 1	AK018544|Stat1|20846|signal transducer and activator of transcription 1	AK041599|Stat1|20846|signal transducer and activator of transcription 1	AK041814|Stat1|20846|signal transducer and activator of transcription 1	AK084855|Stat1|20846|signal transducer and activator of transcription 1	BC004808|Stat1|20846|signal transducer and activator of transcription 1	AK088874|Stat1|20846|signal transducer and activator of transcription 1	AK157458|Stat1|20846|signal transducer and activator of transcription 1	AK157263|Stat1|20846|signal transducer and activator of transcription 1	AK046517|Stat1|20846|signal transducer and activator of transcription 1
mm9_v1_chr5_+_33721199_33721420	0.00417783	AAGGUGC	AK028507|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK040506|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	NM_001081101|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK156117|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	BC137803|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	BC144920|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr9_+_75862772_75862821	0.00382713	AAGGUGC	BC037381|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	NM_173731|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK141622|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK164164|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm9_v1_chr11_+_51398258_51398322	0.00379163	AAGGUGC	AK156866|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	NM_028398|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK160557|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	BC024461|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK013489|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK085984|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2	AK133235|Agxt2l2|72947|alanine-glyoxylate aminotransferase 2-like 2
mm9_v1_chr13_-_93914519_93914678	0.0037562	AAGGUGC	AK010195|Cmya5|76469|cardiomyopathy associated 5	AJ575748|Cmya5|76469|cardiomyopathy associated 5	NM_023821|Cmya5|76469|cardiomyopathy associated 5
mm9_v1_chr10_-_128082881_128083048	0.00293722	AAGGUGC	AK089522|Ikzf4|22781|IKAROS family zinc finger 4	AK170453|Ikzf4|22781|IKAROS family zinc finger 4	NM_011772|Ikzf4|22781|IKAROS family zinc finger 4
mm9_v1_chr17_+_8994520_8994643	0.00284194	AAGGUGC	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr15_+_30102306_30102347	0.00265349	AAGGUGC	NM_008729|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	U90331|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chr13_-_64254466_64254592	0.00262462	AAGGUGC	BC119531|Zfp367|238673|zinc finger protein 367	BC119532|Zfp367|238673|zinc finger protein 367	AK033288|Zfp367|238673|zinc finger protein 367	NM_175494|Zfp367|238673|zinc finger protein 367	AK041331|Zfp367|238673|zinc finger protein 367	AK041361|Zfp367|238673|zinc finger protein 367	AK077686|Zfp367|238673|zinc finger protein 367
mm9_v1_chr19_-_5388655_5388722	0.00240517	AAGGUGC	AB014721|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	AK088341|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	BC028823|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	BC051394|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	AF129931|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1	NM_016882|Sart1|20227|squamous cell carcinoma antigen recognized by T-cells 1
mm9_v1_chr15_+_99548019_99548062	0.00224635	AAGGUGC	AK004565|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	BC019391|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	NM_010271|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	AK220445|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	J02655|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)	BC005756|Gpd1|14555|glycerol-3-phosphate dehydrogenase 1 (soluble)
mm9_v1_chr2_-_52601140_52601264	0.00194676	AAGGUGC	AK214650|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK004604|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	NM_019667|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AB012611|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK044230|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK159699|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK017668|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK078244|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK168729|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	BC013818|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	DQ141211|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK035789|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm9_v1_chr9_+_111174321_111174442	0.001901	AAGGUGC	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr15_+_80453912_80453951	0.00155239	AAGGUGC	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr6_+_108778633_108778716	0.00139995	AAGGUGC	AK030943|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	NM_138677|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AB042828|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK151668|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK152724|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK129090|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK152979|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK082920|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	BC023237|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1
mm9_v1_chr16_+_5050149_5050235	0.00139654	AAGGUGC	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chrX_-_20194689_20194694	0.00130121	AAGGUGC	NM_019435|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr1_-_99558490_99558623	0.000897883	AAGGUGC	AK162223|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK135656|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	BC019375|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	BC023951|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK152370|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK168549|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	NM_133825|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed
mm9_v1_chr3_+_14641726_14641789	0.000845533	AAGGUGC	AK162621|Car13|71934|carbonic anhydrase 13	NM_024495|Car13|71934|carbonic anhydrase 13	AK153080|Car13|71934|carbonic anhydrase 13	AK153353|Car13|71934|carbonic anhydrase 13	AK010166|Car13|71934|carbonic anhydrase 13	AK150871|Car13|71934|carbonic anhydrase 13	AK150897|Car13|71934|carbonic anhydrase 13	AK151978|Car13|71934|carbonic anhydrase 13	BC064050|Car13|71934|carbonic anhydrase 13	AF231123|Car13|71934|carbonic anhydrase 13	AK152124|Car13|71934|carbonic anhydrase 13	AK153258|Car13|71934|carbonic anhydrase 13	AK151519|Car13|71934|carbonic anhydrase 13
mm9_v1_chr1_-_59176583_59176664	0.000827881	AAGGUGC	AK170118|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	AK167733|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4	NM_001037812|Als2cr4|381259|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4
mm9_v1_chr1_+_88199795_88199833	0.000524548	AAGGUGC	NM_145222|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	AK080081|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	AF502429|B3gnt7|227327|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
mm9_v1_chr11_-_87217940_87218007	1.53815e-05	AAGGUGC	BC090648|Rad51c|114714|RAD51 homolog c (S. cerevisiae)	BC141034|Rad51c|114714|RAD51 homolog c (S. cerevisiae)	NM_053269|Rad51c|114714|RAD51 homolog c (S. cerevisiae)	AK136204|Rad51c|114714|RAD51 homolog c (S. cerevisiae)
