mm9_v1_chr3_+_127336055_127336062	0.419886	AAUCUCA	AK143190|Neurog2|11924|neurogenin 2	BC055743|Neurog2|11924|neurogenin 2	NM_009718|Neurog2|11924|neurogenin 2
mm9_v1_chr6_-_89312545_89312689	0.214844	AAUCUCA	D86948|Plxna1|18844|plexin A1	NM_008881|Plxna1|18844|plexin A1
mm9_v1_chr10_+_84218792_84218938	0.182974	AAUCUCA	NM_001024918|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK034131|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK090309|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY102010|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY342003|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AB086957|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)
mm9_v1_chrX_+_133584130_133584209	0.160891	AAUCUCA	AK154624|Fam199x|245622|family with sequence similarity 199, X-linked	NM_146261|Fam199x|245622|family with sequence similarity 199, X-linked	BC031748|Fam199x|245622|family with sequence similarity 199, X-linked	AK039695|Fam199x|245622|family with sequence similarity 199, X-linked
mm9_v1_chr2_+_29917543_29917687	0.14836	AAUCUCA	BC018255|Set|56086|SET nuclear oncogene	NM_023871|Set|56086|SET nuclear oncogene	AB044937|Set|56086|SET nuclear oncogene	AK011630|Set|56086|SET nuclear oncogene	BC103791|Set|56086|SET nuclear oncogene
mm9_v1_chr6_-_39156706_39156787	0.142598	AAUCUCA	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr4_+_57858096_57858154	0.113406	AAUCUCA	NM_001035532|Akap2|11641|A kinase (PRKA) anchor protein 2	NM_009649|Akap2|11641|A kinase (PRKA) anchor protein 2	AK041873|Akap2|11641|A kinase (PRKA) anchor protein 2	AK147420|Akap2|11641|A kinase (PRKA) anchor protein 2	BC003735|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr11_+_80196766_80196898	0.112622	AAUCUCA	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr19_-_24936327_24936331	0.090694	AAUCUCA	AK035507|Pgm5|226041|phosphoglucomutase 5	NM_175013|Pgm5|226041|phosphoglucomutase 5
mm9_v1_chr6_-_31513817_31513936	0.0881819	AAUCUCA	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr1_-_95375372_95375387	0.0857891	AAUCUCA	BC027779|Hdlbp|110611|high density lipoprotein (HDL) binding protein	BC027788|Hdlbp|110611|high density lipoprotein (HDL) binding protein	NM_133808|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr2_-_44968728_44968798	0.0856515	AAUCUCA	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr19_-_28085534_28085655	0.0830306	AAUCUCA	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr9_+_25060152_25060278	0.0822658	AAUCUCA	NM_009859|Sept7|235072|septin 7	BC058587|Sept7|235072|septin 7	AK141572|Sept7|235072|septin 7	AK147986|Sept7|235072|septin 7	AK088997|Sept7|235072|septin 7	AK144127|Sept7|235072|septin 7	AK220447|Sept7|235072|septin 7
mm9_v1_chr5_+_73882264_73882364	0.0795979	AAUCUCA	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr3_-_138152336_138152369	0.0737666	AAUCUCA	BC096469|Metap1|75624|methionyl aminopeptidase 1	AK077694|Metap1|75624|methionyl aminopeptidase 1	NM_175224|Metap1|75624|methionyl aminopeptidase 1	AK153944|Metap1|75624|methionyl aminopeptidase 1	AK165034|Metap1|75624|methionyl aminopeptidase 1	AK152138|Metap1|75624|methionyl aminopeptidase 1	AK153231|Metap1|75624|methionyl aminopeptidase 1
mm9_v1_chr19_+_40905768_40905801	0.0711138	AAUCUCA	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr15_-_38008565_38008625	0.0707245	AAUCUCA	NM_001081359|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5	NM_001112721|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chr7_-_138553991_138554026	0.0706423	AAUCUCA	BC048183|Ikzf5|67143|IKAROS family zinc finger 5	BC058537|Ikzf5|67143|IKAROS family zinc finger 5	NM_175115|Ikzf5|67143|IKAROS family zinc finger 5	AK153883|Ikzf5|67143|IKAROS family zinc finger 5	AK033716|Ikzf5|67143|IKAROS family zinc finger 5	BC089455|Ikzf5|67143|IKAROS family zinc finger 5	AK169384|Ikzf5|67143|IKAROS family zinc finger 5
mm9_v1_chr17_+_15841889_15842002	0.0688476	AAUCUCA	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr4_-_87679175_87679310	0.067398	AAUCUCA	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr9_-_95412264_95412414	0.0647683	AAUCUCA	BC031497|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC080699|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011588|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC059732|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011796|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK029898|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC068265|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_001114977|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_026476|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene
mm9_v1_chr8_-_90483392_90483493	0.0601918	AAUCUCA	AY256893|Zfp423|94187|zinc finger protein 423	AK122365|Zfp423|94187|zinc finger protein 423	NM_033327|Zfp423|94187|zinc finger protein 423
mm9_v1_chr4_-_87452140_87452217	0.0575555	AAUCUCA	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr5_+_67651890_67652024	0.0564087	AAUCUCA	AK012413|Tmem33|67878|transmembrane protein 33	NM_028975|Tmem33|67878|transmembrane protein 33	NM_030108|Tmem33|67878|transmembrane protein 33	AK032555|Tmem33|67878|transmembrane protein 33	AK005493|Tmem33|67878|transmembrane protein 33	AK007750|Tmem33|67878|transmembrane protein 33	AK017281|Tmem33|67878|transmembrane protein 33	AK153441|Tmem33|67878|transmembrane protein 33	AK007607|Tmem33|67878|transmembrane protein 33	BC005562|Tmem33|67878|transmembrane protein 33	AK165369|Tmem33|67878|transmembrane protein 33
mm9_v1_chr16_+_32914183_32914232	0.0471854	AAUCUCA	AK155550|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	NM_001081255|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK076529|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC151058|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC157924|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC172144|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK133482|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3
mm9_v1_chr17_-_71824652_71824682	0.0457052	AAUCUCA	AK078494|Smchd1|74355|SMC hinge domain containing 1	NM_028887|Smchd1|74355|SMC hinge domain containing 1
mm9_v1_chr10_+_98569715_98569826	0.0444806	AAUCUCA	BC144819|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC145801|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC099926|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK050233|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK090075|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	NM_027740|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK045302|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)
mm9_v1_chr3_+_133903056_133903111	0.0442289	AAUCUCA	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chr2_-_127410404_127410441	0.0427601	AAUCUCA	BC052876|Zfp661|72180|zinc finger protein 661	AK033122|Zfp661|72180|zinc finger protein 661	NM_001111029|Zfp661|72180|zinc finger protein 661	NM_028141|Zfp661|72180|zinc finger protein 661
mm9_v1_chr6_-_13557981_13558062	0.0415499	AAUCUCA	BC024911|Tmem168|101118|transmembrane protein 168	BC007160|Tmem168|101118|transmembrane protein 168	AK054353|Tmem168|101118|transmembrane protein 168	AK152957|Tmem168|101118|transmembrane protein 168	AK034589|Tmem168|101118|transmembrane protein 168	AK170302|Tmem168|101118|transmembrane protein 168	AK018471|Tmem168|101118|transmembrane protein 168	AK051532|Tmem168|101118|transmembrane protein 168	NM_028990|Tmem168|101118|transmembrane protein 168
mm9_v1_chr12_-_55963776_55963890	0.0415003	AAUCUCA	AK147174|Cfl2|12632|cofilin 2, muscle	BC007138|Cfl2|12632|cofilin 2, muscle	AK004659|Cfl2|12632|cofilin 2, muscle	L29468|Cfl2|12632|cofilin 2, muscle	NM_007688|Cfl2|12632|cofilin 2, muscle
mm9_v1_chr3_+_21975544_21975859	0.0412638	AAUCUCA	AK036064|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	NM_030732|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	AK033347|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1
mm9_v1_chr6_-_134837738_134837876	0.0412547	AAUCUCA	U46923|Gpr19|14760|G protein-coupled receptor 19	BC050187|Gpr19|14760|G protein-coupled receptor 19	NM_001167697|Gpr19|14760|G protein-coupled receptor 19	NM_001167699|Gpr19|14760|G protein-coupled receptor 19	NM_008157|Gpr19|14760|G protein-coupled receptor 19
mm9_v1_chr9_-_66767436_66767566	0.0411297	AAUCUCA	AB232601|Rab8b|235442|RAB8B, member RAS oncogene family	AK031251|Rab8b|235442|RAB8B, member RAS oncogene family	BC157974|Rab8b|235442|RAB8B, member RAS oncogene family	AK051218|Rab8b|235442|RAB8B, member RAS oncogene family	AK084650|Rab8b|235442|RAB8B, member RAS oncogene family	AK155621|Rab8b|235442|RAB8B, member RAS oncogene family	BC059208|Rab8b|235442|RAB8B, member RAS oncogene family	NM_173413|Rab8b|235442|RAB8B, member RAS oncogene family
mm9_v1_chr1_-_64784316_64784324	0.0364925	AAUCUCA	AK039402|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_001042659|Fzd5|14367|frizzled homolog 5 (Drosophila)	NM_022721|Fzd5|14367|frizzled homolog 5 (Drosophila)	AK030111|Fzd5|14367|frizzled homolog 5 (Drosophila)
mm9_v1_chr6_-_134847832_134848056	0.0358312	AAUCUCA	NM_001167695|Gpr19|14760|G protein-coupled receptor 19	NM_001167696|Gpr19|14760|G protein-coupled receptor 19	BC021648|Gpr19|14760|G protein-coupled receptor 19	AK132917|Gpr19|14760|G protein-coupled receptor 19	AK140770|Gpr19|14760|G protein-coupled receptor 19	AK160688|Gpr19|14760|G protein-coupled receptor 19	NM_001167693|Gpr19|14760|G protein-coupled receptor 19	NM_001167694|Gpr19|14760|G protein-coupled receptor 19	NM_001167700|Gpr19|14760|G protein-coupled receptor 19
mm9_v1_chr2_-_71384748_71384810	0.0357792	AAUCUCA	M80540|Dlx2|13392|distal-less homeobox 2	AK144652|Dlx2|13392|distal-less homeobox 2	NM_010054|Dlx2|13392|distal-less homeobox 2
mm9_v1_chr6_+_17587046_17587119	0.0357745	AAUCUCA	AK150587|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	BC082589|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	NM_007604|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK007550|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AY544984|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK008204|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr14_+_47502637_47502773	0.0339968	AAUCUCA	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr8_-_97362140_97362260	0.0317729	AAUCUCA	AK088757|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	BC021864|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK146282|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK168252|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK076116|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK079615|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK163705|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK136821|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	NM_134141|Ciapin1|109006|cytokine induced apoptosis inhibitor 1
mm9_v1_chrX_-_101609169_101609195	0.031561	AAUCUCA	AK151967|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152535|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152816|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152946|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK084853|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK040069|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC151037|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	NM_009592|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC080769|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm9_v1_chr3_-_142544883_142544984	0.0306354	AAUCUCA	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr2_+_75670230_75670233	0.0299223	AAUCUCA	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr3_-_95622554_95622875	0.0295426	AAUCUCA	AK129150|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK154692|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	BC067054|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK083674|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK087157|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK012860|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK015972|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	NM_001081293|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2
mm9_v1_chr15_-_34424979_34425004	0.0279404	AAUCUCA	NM_008287|Hrsp12|15473|heat-responsive protein 12
mm9_v1_chr1_+_168931547_168931719	0.0271997	AAUCUCA	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chr4_+_47366162_47366183	0.0266134	AAUCUCA	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr7_+_75097142_75097267	0.0263129	AAUCUCA	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr5_+_92566909_92567009	0.025101	AAUCUCA	AK166587|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	BC016069|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	NM_019490|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK156070|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK144638|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK172425|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK168433|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)
mm9_v1_chr5_+_35104373_35104397	0.0244912	AAUCUCA	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr11_+_64248779_64248833	0.0228487	AAUCUCA	BC094320|Hs3st3a1|15478|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	AK051284|Hs3st3a1|15478|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	NM_178870|Hs3st3a1|15478|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
mm9_v1_chr1_+_138521477_138521641	0.0224606	AAUCUCA	NM_001160251|Zfp281|226442|zinc finger protein 281	NM_177643|Zfp281|226442|zinc finger protein 281	BC003243|Zfp281|226442|zinc finger protein 281	BC062153|Zfp281|226442|zinc finger protein 281	AK157189|Zfp281|226442|zinc finger protein 281	AK142218|Zfp281|226442|zinc finger protein 281
mm9_v1_chr14_+_29831283_29831689	0.0222367	AAUCUCA	NM_176920|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK044492|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK138618|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC099587|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC132594|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC145990|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1
mm9_v1_chr6_+_133985717_133985901	0.0219746	AAUCUCA	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr11_-_30854081_30854140	0.0203123	AAUCUCA	AK002471|Erlec1|66753|endoplasmic reticulum lectin 1	AK077120|Erlec1|66753|endoplasmic reticulum lectin 1	AK133874|Erlec1|66753|endoplasmic reticulum lectin 1	NM_025745|Erlec1|66753|endoplasmic reticulum lectin 1	BC018468|Erlec1|66753|endoplasmic reticulum lectin 1
mm9_v1_chr2_-_7317824_7317824	0.0198619	AAUCUCA	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr19_-_3575695_3575758	0.0184713	AAUCUCA	AK129392|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK088526|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	BC008529|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK035236|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK015925|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK018652|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_001164159|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_028999|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_029456|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3
mm9_v1_chr11_+_120094240_120094260	0.0178321	AAUCUCA	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr5_-_144288812_144288864	0.0150331	AAUCUCA	BC051053|Rac1|19353|RAS-related C3 botulinum substrate 1	BC003828|Rac1|19353|RAS-related C3 botulinum substrate 1	AK008435|Rac1|19353|RAS-related C3 botulinum substrate 1	AK009017|Rac1|19353|RAS-related C3 botulinum substrate 1	AK011072|Rac1|19353|RAS-related C3 botulinum substrate 1	AK034601|Rac1|19353|RAS-related C3 botulinum substrate 1	AK166383|Rac1|19353|RAS-related C3 botulinum substrate 1	NM_009007|Rac1|19353|RAS-related C3 botulinum substrate 1	AK047969|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr11_-_115569814_115569935	0.0138266	AAUCUCA	AK155800|Grb2|14784|growth factor receptor bound protein 2	AK166142|Grb2|14784|growth factor receptor bound protein 2	AK148148|Grb2|14784|growth factor receptor bound protein 2	AK172002|Grb2|14784|growth factor receptor bound protein 2	BC052377|Grb2|14784|growth factor receptor bound protein 2	NM_008163|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr8_-_87364463_87364577	0.0131302	AAUCUCA	X92410|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC138684|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC145372|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK009733|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK038300|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK161875|Rad23a|19358|RAD23a homolog (S. cerevisiae)	NM_009010|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK045224|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK165467|Rad23a|19358|RAD23a homolog (S. cerevisiae)
mm9_v1_chr16_-_78576898_78576912	0.0121688	AAUCUCA	AK009258|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	NM_025967|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr2_-_7317513_7317626	0.0115228	AAUCUCA	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr18_-_70301202_70301243	0.0114202	AAUCUCA	AK045312|Rab27b|80718|RAB27b, member RAS oncogene family	AK086987|Rab27b|80718|RAB27b, member RAS oncogene family	AK049854|Rab27b|80718|RAB27b, member RAS oncogene family	NM_001082553|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr18_-_70212948_70213022	0.0113395	AAUCUCA	BC032928|Rab27b|80718|RAB27b, member RAS oncogene family	AB067775|Rab27b|80718|RAB27b, member RAS oncogene family	AF328893|Rab27b|80718|RAB27b, member RAS oncogene family	BC018443|Rab27b|80718|RAB27b, member RAS oncogene family	NM_030554|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr1_+_107677241_107677394	0.00905097	AAUCUCA	AK138990|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	NM_009399|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	AF019046|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	BC019185|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a	AK020374|Tnfrsf11a|21934|tumor necrosis factor receptor superfamily, member 11a
mm9_v1_chr11_+_95275392_95275501	0.00895961	AAUCUCA	NM_025287|Spop|20747|speckle-type POZ protein	AK168546|Spop|20747|speckle-type POZ protein	AK030746|Spop|20747|speckle-type POZ protein	AK132383|Spop|20747|speckle-type POZ protein	BC045205|Spop|20747|speckle-type POZ protein	AK004669|Spop|20747|speckle-type POZ protein	AK159482|Spop|20747|speckle-type POZ protein	AK028201|Spop|20747|speckle-type POZ protein	BC064809|Spop|20747|speckle-type POZ protein	AK168185|Spop|20747|speckle-type POZ protein	AK166581|Spop|20747|speckle-type POZ protein	AK160858|Spop|20747|speckle-type POZ protein
mm9_v1_chr2_-_6805937_6806041	0.00704581	AAUCUCA	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chrX_-_49034778_49034778	0.00670866	AAUCUCA	NM_001077202|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr7_-_36539369_36539472	0.00628627	AAUCUCA	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr10_+_106708886_106708980	0.0048698	AAUCUCA	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr12_+_86629540_86629669	0.00485622	AAUCUCA	NM_172414|Fam164c|72350|family with sequence similarity 164, member C	AK036602|Fam164c|72350|family with sequence similarity 164, member C	BC049940|Fam164c|72350|family with sequence similarity 164, member C	AK032455|Fam164c|72350|family with sequence similarity 164, member C	AK033213|Fam164c|72350|family with sequence similarity 164, member C	AK012642|Fam164c|72350|family with sequence similarity 164, member C
mm9_v1_chr8_+_116963542_116963590	0.00265531	AAUCUCA	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr6_-_97155541_97155640	0.00238336	AAUCUCA	BC002002|Uba3|22200|ubiquitin-like modifier activating enzyme 3	BC080776|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK048148|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK032514|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK166655|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK168859|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK043801|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK014433|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_001111106|Uba3|22200|ubiquitin-like modifier activating enzyme 3	NM_011666|Uba3|22200|ubiquitin-like modifier activating enzyme 3	AK159381|Uba3|22200|ubiquitin-like modifier activating enzyme 3
mm9_v1_chr9_+_124036265_124036352	0.00212012	AAUCUCA	AK154595|Ccr5|12774|chemokine (C-C motif) receptor 5	NM_009917|Ccr5|12774|chemokine (C-C motif) receptor 5	AK141906|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155632|Ccr5|12774|chemokine (C-C motif) receptor 5	AK170303|Ccr5|12774|chemokine (C-C motif) receptor 5	D83648|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155628|Ccr5|12774|chemokine (C-C motif) receptor 5	AK155867|Ccr5|12774|chemokine (C-C motif) receptor 5	X94151|Ccr5|12774|chemokine (C-C motif) receptor 5	BC105643|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103574|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103586|Ccr5|12774|chemokine (C-C motif) receptor 5	BC103587|Ccr5|12774|chemokine (C-C motif) receptor 5	U47036|Ccr5|12774|chemokine (C-C motif) receptor 5
mm9_v1_chr4_+_151671441_151671540	0.00113377	AAUCUCA	NM_133788|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AF209926|Icmt|57295|isoprenylcysteine carboxyl methyltransferase
mm9_v1_chr15_+_99556048_99556119	0.000393163	AAUCUCA	NM_183256|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	AK009401|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene	BC059905|2310016M24Rik|66379|RIKEN cDNA 2310016M24 gene
mm9_v1_chr9_-_85220730_85220905	6.69826e-05	AAUCUCA	NM_001160378|Fam46a|212943|family with sequence similarity 46, member A	AK135132|Fam46a|212943|family with sequence similarity 46, member A	NM_001160379|Fam46a|212943|family with sequence similarity 46, member A
