mm9_v1_chr19_-_19185685_19185685	8.06387	ACAUUCA	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr14_-_20796411_20796481	4.71789	ACAUUCA	AK158697|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_001038637|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_010315|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr6_-_98978185_98978383	3.51728	ACAUUCA	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr18_+_10325174_10325177	3.47523	ACAUUCA	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr2_+_107130745_107130810	3.44837	ACAUUCA	NM_021275|Kcna4|16492|potassium voltage-gated channel, shaker-related subfamily, member 4	AK036112|Kcna4|16492|potassium voltage-gated channel, shaker-related subfamily, member 4
mm9_v1_chr11_+_104092749_104092776	3.32607	ACAUUCA	M18775|Mapt|17762|microtubule-associated protein tau	M18776|Mapt|17762|microtubule-associated protein tau	NM_001038609|Mapt|17762|microtubule-associated protein tau	NM_010838|Mapt|17762|microtubule-associated protein tau	AK078167|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr7_-_91558468_91558528	3.09093	ACAUUCA	BC054546|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2	NM_007488|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr1_-_77511653_77511664	2.79685	ACAUUCA	AK028509|Epha4|13838|Eph receptor A4	AK147698|Epha4|13838|Eph receptor A4	AK132203|Epha4|13838|Eph receptor A4	NM_007936|Epha4|13838|Eph receptor A4	S57168|Epha4|13838|Eph receptor A4	X65138|Epha4|13838|Eph receptor A4
mm9_v1_chr2_+_179777187_179777250	2.71474	ACAUUCA	NM_178750|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	BC054730|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK133944|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr18_+_37098858_37098971	2.55046	ACAUUCA	BC030897|Pcdha2|353234|protocadherin alpha 2	NM_198117|Pcdha2|353234|protocadherin alpha 2	BC141390|Pcdha2|353234|protocadherin alpha 2	AY013760|Pcdha2|353234|protocadherin alpha 2
mm9_v1_chr1_-_97564139_97564174	2.52864	ACAUUCA	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr13_+_42804911_42805054	2.40552	ACAUUCA	BC048407|Phactr1|218194|phosphatase and actin regulator 1	BC061691|Phactr1|218194|phosphatase and actin regulator 1	NM_001005740|Phactr1|218194|phosphatase and actin regulator 1	AK048208|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr10_-_88067758_88067896	2.34832	ACAUUCA	BC062158|Mybpc1|109272|myosin binding protein C, slow-type	AK132188|Mybpc1|109272|myosin binding protein C, slow-type	NM_175418|Mybpc1|109272|myosin binding protein C, slow-type
mm9_v1_chr8_-_30330079_30330107	2.34122	ACAUUCA	AJ487854|Unc5d|210801|unc-5 homolog D (C. elegans)	NM_153135|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr11_-_11937330_11937512	2.14321	ACAUUCA	AK030727|Grb10|14783|growth factor receptor bound protein 10	BC053842|Grb10|14783|growth factor receptor bound protein 10	AF022072|Grb10|14783|growth factor receptor bound protein 10	AK012646|Grb10|14783|growth factor receptor bound protein 10	AK163841|Grb10|14783|growth factor receptor bound protein 10	AK032927|Grb10|14783|growth factor receptor bound protein 10	NM_010345|Grb10|14783|growth factor receptor bound protein 10	FJ425892|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr1_+_169619688_169619905	2.13711	ACAUUCA	AK044944|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	NM_033652|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	BC109167|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	BC109168|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	AF226662|Lmx1a|110648|LIM homeobox transcription factor 1 alpha
mm9_v1_chr17_+_78599556_78599594	2.0764	ACAUUCA	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr3_+_5218545_5218658	2.04256	ACAUUCA	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr18_+_37127284_37127409	1.98836	ACAUUCA	D86917|Pcdha6|12937|protocadherin alpha 6	BC150815|Pcdha6|12937|protocadherin alpha 6	BC150816|Pcdha6|12937|protocadherin alpha 6	BC054813|Pcdha6|12937|protocadherin alpha 6	AY013764|Pcdha6|12937|protocadherin alpha 6	NM_007767|Pcdha6|12937|protocadherin alpha 6
mm9_v1_chr8_-_25549415_25549421	1.9821	ACAUUCA	AK007441|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene	NM_026931|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene
mm9_v1_chrX_+_130939318_130939458	1.95321	ACAUUCA	AK038488|Drp2|13497|dystrophin related protein 2	NM_010078|Drp2|13497|dystrophin related protein 2	AK081426|Drp2|13497|dystrophin related protein 2	AK034383|Drp2|13497|dystrophin related protein 2	BC125345|Drp2|13497|dystrophin related protein 2	BC125347|Drp2|13497|dystrophin related protein 2
mm9_v1_chr1_-_99666564_99666675	1.91576	ACAUUCA	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr13_-_100286521_100286556	1.86827	ACAUUCA	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr2_-_63936044_63936094	1.80969	ACAUUCA	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr3_-_84024766_84024812	1.78363	ACAUUCA	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr6_+_86992796_86992906	1.77338	ACAUUCA	AK087173|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	NM_013528|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK019852|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK039792|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC050762|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AF334736|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC010516|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr10_-_121484248_121484370	1.7026	ACAUUCA	NM_001081037|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120892|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120893|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	AK138257|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1
mm9_v1_chr12_-_36769054_36769127	1.69879	ACAUUCA	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr4_-_133843139_133843188	1.67993	ACAUUCA	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr14_-_21613162_21613325	1.67264	ACAUUCA	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr13_+_40982534_40982735	1.66211	ACAUUCA	NM_008105|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK080061|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK054226|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AB037597|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435149|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr9_+_86360760_86360843	1.65949	ACAUUCA	NM_177208|Dopey1|320615|dopey family member 1	AK054511|Dopey1|320615|dopey family member 1	AK082462|Dopey1|320615|dopey family member 1	AK044820|Dopey1|320615|dopey family member 1	AK052544|Dopey1|320615|dopey family member 1	AK045873|Dopey1|320615|dopey family member 1
mm9_v1_chrX_+_55283804_55283819	1.61883	ACAUUCA	AK139364|Zic3|22773|zinc finger protein of the cerebellum 3	NM_009575|Zic3|22773|zinc finger protein of the cerebellum 3
mm9_v1_chr18_+_23962468_23962588	1.58588	ACAUUCA	NM_153058|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK038562|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK140595|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK040767|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045904|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148954|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046221|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC027056|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC035254|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC025804|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK050527|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148480|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046095|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK088734|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC028987|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045493|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr4_+_85699818_85699939	1.57349	ACAUUCA	NM_029967|Adamtsl1|77739|ADAMTS-like 1	AK020115|Adamtsl1|77739|ADAMTS-like 1	BC062814|Adamtsl1|77739|ADAMTS-like 1	AK045085|Adamtsl1|77739|ADAMTS-like 1	BC139339|Adamtsl1|77739|ADAMTS-like 1	BC139367|Adamtsl1|77739|ADAMTS-like 1
mm9_v1_chr18_+_37133455_37133703	1.5531	ACAUUCA	BC080863|Pcdha7|12939|protocadherin alpha 7	AY013765|Pcdha7|12939|protocadherin alpha 7	NM_009957|Pcdha7|12939|protocadherin alpha 7	AB008179|Pcdha7|12939|protocadherin alpha 7	EU854476|Pcdha7|12939|protocadherin alpha 7
mm9_v1_chr3_+_55046447_55046542	1.54346	ACAUUCA	AK147831|Dclk1|13175|doublecortin-like kinase 1	NM_001111053|Dclk1|13175|doublecortin-like kinase 1	NM_001195538|Dclk1|13175|doublecortin-like kinase 1	NM_019978|Dclk1|13175|doublecortin-like kinase 1	AB093234|Dclk1|13175|doublecortin-like kinase 1	AK164993|Dclk1|13175|doublecortin-like kinase 1	AF155820|Dclk1|13175|doublecortin-like kinase 1	BC064783|Dclk1|13175|doublecortin-like kinase 1	BC021354|Dclk1|13175|doublecortin-like kinase 1	AK043874|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr14_-_67487226_67487503	1.52253	ACAUUCA	Y10339|Dpysl2|12934|dihydropyrimidinase-like 2	X87242|Dpysl2|12934|dihydropyrimidinase-like 2	BC062955|Dpysl2|12934|dihydropyrimidinase-like 2	NM_009955|Dpysl2|12934|dihydropyrimidinase-like 2
mm9_v1_chrX_-_71126088_71126172	1.50946	ACAUUCA	BC056988|L1cam|16728|L1 cell adhesion molecule	AK139407|L1cam|16728|L1 cell adhesion molecule	NM_008478|L1cam|16728|L1 cell adhesion molecule
mm9_v1_chr4_-_91042997_91043190	1.49231	ACAUUCA	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr16_+_11066390_11066492	1.49101	ACAUUCA	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chr7_-_148008029_148008088	1.48299	ACAUUCA	BC068250|Zfp941|407812|zinc finger protein 941	BC066028|Zfp941|407812|zinc finger protein 941	AK045889|Zfp941|407812|zinc finger protein 941	AK141045|Zfp941|407812|zinc finger protein 941	NM_001001180|Zfp941|407812|zinc finger protein 941
mm9_v1_chr13_+_55050729_55050861	1.43371	ACAUUCA	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr18_+_37105758_37105860	1.41695	ACAUUCA	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr12_-_46175433_46175475	1.40895	ACAUUCA	NM_144552|Stxbp6|217517|syntaxin binding protein 6 (amisyn)
mm9_v1_chr13_+_9275741_9275783	1.40656	ACAUUCA	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr17_-_91492065_91492142	1.40585	ACAUUCA	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr17_+_74927634_74927745	1.39855	ACAUUCA	NM_007566|Birc6|12211|baculoviral IAP repeat-containing 6	Y17267|Birc6|12211|baculoviral IAP repeat-containing 6
mm9_v1_chr2_+_134611879_134611910	1.36587	ACAUUCA	AK143153|Plcb1|18795|phospholipase C, beta 1	NM_001145830|Plcb1|18795|phospholipase C, beta 1	NM_019677|Plcb1|18795|phospholipase C, beta 1	AK040911|Plcb1|18795|phospholipase C, beta 1
mm9_v1_chr1_-_140739020_140739033	1.32713	ACAUUCA	AK031478|Lhx9|16876|LIM homeobox protein 9	NM_001025565|Lhx9|16876|LIM homeobox protein 9	NM_001042577|Lhx9|16876|LIM homeobox protein 9	BC072623|Lhx9|16876|LIM homeobox protein 9
mm9_v1_chr2_-_25838722_25838801	1.32192	ACAUUCA	AK137097|Camsap1|227634|calmodulin regulated spectrin-associated protein 1	NM_001115076|Camsap1|227634|calmodulin regulated spectrin-associated protein 1
mm9_v1_chr4_-_109960078_109960115	1.26858	ACAUUCA	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr9_-_56265833_56265857	1.21119	ACAUUCA	AK035440|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	AK048912|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	NM_172924|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene
mm9_v1_chr2_+_119722957_119723040	1.18639	ACAUUCA	AK046252|Mga|29808|MAX gene associated	NM_001164274|Mga|29808|MAX gene associated	NM_013720|Mga|29808|MAX gene associated	AK162302|Mga|29808|MAX gene associated	AK032570|Mga|29808|MAX gene associated	AK012050|Mga|29808|MAX gene associated	AK139919|Mga|29808|MAX gene associated	AK172962|Mga|29808|MAX gene associated
mm9_v1_chr12_-_93087514_93087619	1.18404	ACAUUCA	AF063095|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160936|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	BC026816|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005023|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK146022|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK161546|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160420|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005544|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK220502|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_001039089|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_011344|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)
mm9_v1_chr5_-_24414236_24414326	1.18047	ACAUUCA	AY348864|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	AK165834|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	AK010703|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_001170555|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_001170556|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr5_-_92512683_92512782	1.17158	ACAUUCA	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr5_+_30559138_30559249	1.17114	ACAUUCA	NM_027652|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040494|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK079325|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK083973|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK140416|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC106097|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK048011|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK014530|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC115783|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	BC117551|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK122544|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)	AK040745|Ept1|28042|ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)
mm9_v1_chr16_+_78301923_78302076	1.16087	ACAUUCA	NM_001025192|Cxadr|13052|coxsackie virus and adenovirus receptor	NM_009988|Cxadr|13052|coxsackie virus and adenovirus receptor	AK004908|Cxadr|13052|coxsackie virus and adenovirus receptor	AK145569|Cxadr|13052|coxsackie virus and adenovirus receptor	AK160457|Cxadr|13052|coxsackie virus and adenovirus receptor	BC016457|Cxadr|13052|coxsackie virus and adenovirus receptor	BC004680|Cxadr|13052|coxsackie virus and adenovirus receptor	U90715|Cxadr|13052|coxsackie virus and adenovirus receptor	Y10320|Cxadr|13052|coxsackie virus and adenovirus receptor
mm9_v1_chr18_+_37170365_37170627	1.13619	ACAUUCA	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr9_+_56842653_56842808	1.1194	ACAUUCA	BC053017|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	NM_019651|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chr10_+_122701051_122701245	1.11333	ACAUUCA	AK139403|Fam19a2|268354|family with sequence similarity 19, member A2	NM_182807|Fam19a2|268354|family with sequence similarity 19, member A2	AK140763|Fam19a2|268354|family with sequence similarity 19, member A2	BC027082|Fam19a2|268354|family with sequence similarity 19, member A2
mm9_v1_chr10_+_105907394_105907408	1.10971	ACAUUCA	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chrX_+_53862956_53863040	1.10508	ACAUUCA	NM_172780|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	AK032326|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	BC130221|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	AK122232|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm9_v1_chr19_+_45063750_45063833	1.10089	ACAUUCA	AK039355|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	BC054532|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AK173219|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AF134918|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	NM_011976|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm9_v1_chr12_+_85455277_85455306	1.09919	ACAUUCA	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr6_-_31513817_31513936	1.08892	ACAUUCA	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr13_-_46060325_46060353	1.08837	ACAUUCA	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr19_+_22522646_22522721	1.08522	ACAUUCA	AK044454|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_177341|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	BC141400|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	BC141412|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr16_-_22163264_22163371	1.06083	ACAUUCA	NM_183029|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2
mm9_v1_chr18_-_44821919_44821954	1.05437	ACAUUCA	AK054528|Mcc|328949|mutated in colorectal cancers	NM_001085374|Mcc|328949|mutated in colorectal cancers	AK086823|Mcc|328949|mutated in colorectal cancers
mm9_v1_chr11_-_28484265_28484323	1.04971	ACAUUCA	AK087049|Ccdc85a|216613|coiled-coil domain containing 85A	AK087070|Ccdc85a|216613|coiled-coil domain containing 85A	AK045568|Ccdc85a|216613|coiled-coil domain containing 85A	NM_001166661|Ccdc85a|216613|coiled-coil domain containing 85A	NM_001166662|Ccdc85a|216613|coiled-coil domain containing 85A	NM_181577|Ccdc85a|216613|coiled-coil domain containing 85A	AK173298|Ccdc85a|216613|coiled-coil domain containing 85A
mm9_v1_chr15_-_37389073_37389150	1.02223	ACAUUCA	BC026979|Ncald|52589|neurocalcin delta	AK167313|Ncald|52589|neurocalcin delta	AK034031|Ncald|52589|neurocalcin delta	NM_001170867|Ncald|52589|neurocalcin delta	NM_001170868|Ncald|52589|neurocalcin delta
mm9_v1_chr2_-_73730605_73730700	1.02127	ACAUUCA	AK139844|Atf2|11909|activating transcription factor 2	AK146839|Atf2|11909|activating transcription factor 2	AK139515|Atf2|11909|activating transcription factor 2	BC079883|Atf2|11909|activating transcription factor 2	BC085137|Atf2|11909|activating transcription factor 2	BC082596|Atf2|11909|activating transcription factor 2	AK035438|Atf2|11909|activating transcription factor 2	AK140855|Atf2|11909|activating transcription factor 2	AK144977|Atf2|11909|activating transcription factor 2	AK051591|Atf2|11909|activating transcription factor 2	AK087424|Atf2|11909|activating transcription factor 2	NM_001025093|Atf2|11909|activating transcription factor 2	NM_009715|Atf2|11909|activating transcription factor 2	AK145887|Atf2|11909|activating transcription factor 2
mm9_v1_chr11_+_93905501_93905545	1.01477	ACAUUCA	AK014060|Spag9|70834|sperm associated antigen 9	AK079365|Spag9|70834|sperm associated antigen 9	NM_001025428|Spag9|70834|sperm associated antigen 9	NM_001025429|Spag9|70834|sperm associated antigen 9	NM_001025430|Spag9|70834|sperm associated antigen 9	AK172961|Spag9|70834|sperm associated antigen 9
mm9_v1_chr1_-_99992145_99992228	1.00689	ACAUUCA	AK051649|Pam|18484|peptidylglycine alpha-amidating monooxygenase	NM_013626|Pam|18484|peptidylglycine alpha-amidating monooxygenase	AK141291|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr12_-_81213930_81214002	0.996075	ACAUUCA	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr10_+_5151833_5151833	0.987271	ACAUUCA	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr6_-_122436294_122436344	0.973802	ACAUUCA	BC052078|Rimklb|108653|ribosomal modification protein rimK-like family member B	NM_027664|Rimklb|108653|ribosomal modification protein rimK-like family member B	AK173135|Rimklb|108653|ribosomal modification protein rimK-like family member B
mm9_v1_chr19_+_45005608_45005655	0.971079	ACAUUCA	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr14_+_73542316_73542336	0.949714	ACAUUCA	NM_001170694|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	NM_134083|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr15_-_96529998_96530181	0.926565	ACAUUCA	BC041108|Slc38a2|67760|solute carrier family 38, member 2	BC027259|Slc38a2|67760|solute carrier family 38, member 2	AK129342|Slc38a2|67760|solute carrier family 38, member 2	BC048178|Slc38a2|67760|solute carrier family 38, member 2	NM_175121|Slc38a2|67760|solute carrier family 38, member 2	AK017145|Slc38a2|67760|solute carrier family 38, member 2	AK030917|Slc38a2|67760|solute carrier family 38, member 2	AK031615|Slc38a2|67760|solute carrier family 38, member 2	AK047403|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr2_+_109731003_109731053	0.910187	ACAUUCA	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr6_+_71657791_71657963	0.907234	ACAUUCA	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr5_-_68238654_68238670	0.906208	ACAUUCA	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr1_-_52290058_52290076	0.902	ACAUUCA	AK173039|Gls|14660|glutaminase	NM_001081081|Gls|14660|glutaminase	NM_001113383|Gls|14660|glutaminase
mm9_v1_chr10_-_116813919_116814033	0.893224	ACAUUCA	AK048615|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK046856|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK168764|Cpsf6|432508|cleavage and polyadenylation specific factor 6	BC068133|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK049749|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK077684|Cpsf6|432508|cleavage and polyadenylation specific factor 6	NM_001013391|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr5_-_136410488_136410547	0.888275	ACAUUCA	NM_018871|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr2_-_39046224_39046253	0.875528	ACAUUCA	BC132485|Scai|320271|suppressor of cancer cell invasion	BC144986|Scai|320271|suppressor of cancer cell invasion	BC144987|Scai|320271|suppressor of cancer cell invasion	BC144989|Scai|320271|suppressor of cancer cell invasion	AK044772|Scai|320271|suppressor of cancer cell invasion	AK082408|Scai|320271|suppressor of cancer cell invasion	AK083280|Scai|320271|suppressor of cancer cell invasion	NM_178778|Scai|320271|suppressor of cancer cell invasion	AK163712|Scai|320271|suppressor of cancer cell invasion
mm9_v1_chr3_-_104315778_104315782	0.8741	ACAUUCA	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr12_+_101437735_101437896	0.871978	ACAUUCA	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr18_+_37112301_37112419	0.866343	ACAUUCA	AK149282|Pcdha4|12936|protocadherin alpha 4	AK048980|Pcdha4|12936|protocadherin alpha 4	BC060211|Pcdha4|12936|protocadherin alpha 4	D86916|Pcdha4|12936|protocadherin alpha 4	NM_007766|Pcdha4|12936|protocadherin alpha 4	AF464180|Pcdha4-g|100384868|protocadherin alpha 4-gamma	NM_001174154|Pcdha4-g|100384868|protocadherin alpha 4-gamma	AY013762|Pcdha4|12936|protocadherin alpha 4
mm9_v1_chr2_-_136213509_136213702	0.85523	ACAUUCA	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chr6_+_90412566_90412633	0.854703	ACAUUCA	AK138824|Klf15|66277|Kruppel-like factor 15	AK142618|Klf15|66277|Kruppel-like factor 15	AK009739|Klf15|66277|Kruppel-like factor 15	NM_023184|Klf15|66277|Kruppel-like factor 15
mm9_v1_chr4_+_34011567_34011625	0.851539	ACAUUCA	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chr7_+_98239230_98239295	0.837593	ACAUUCA	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr4_+_53644336_53644426	0.830637	ACAUUCA	NM_001195284|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	NM_176966|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	AK140020|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	AK038893|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	BC130265|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like
mm9_v1_chr3_-_80606704_80606756	0.8204	ACAUUCA	AK163941|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK046861|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001039195|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001083806|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_013540|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK014389|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr9_+_121275947_121276133	0.819967	ACAUUCA	NM_175114|Trak1|67095|trafficking protein, kinesin binding 1	BC046285|Trak1|67095|trafficking protein, kinesin binding 1	BC058971|Trak1|67095|trafficking protein, kinesin binding 1
mm9_v1_chr4_-_98787525_98787622	0.818726	ACAUUCA	NM_026082|Dock7|67299|dedicator of cytokinesis 7
mm9_v1_chr9_+_113840051_113840064	0.815332	ACAUUCA	AK143282|Ubp1|22221|upstream binding protein 1	NM_001083319|Ubp1|22221|upstream binding protein 1	NM_013699|Ubp1|22221|upstream binding protein 1
mm9_v1_chr6_-_143048580_143048646	0.805773	ACAUUCA	AK029825|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK021056|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	BC027763|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK143732|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_001109688|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029081|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029897|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene
mm9_v1_chrX_+_98835386_98835624	0.797587	ACAUUCA	AK076418|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	NM_139144|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AK163296|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC025097|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC057319|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC037194|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC055851|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AF363030|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm9_v1_chr13_+_81850415_81850532	0.796667	ACAUUCA	AK046032|Mblac2|72852|metallo-beta-lactamase domain containing 2	NM_028372|Mblac2|72852|metallo-beta-lactamase domain containing 2	AK013594|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107207|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC114401|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107206|Mblac2|72852|metallo-beta-lactamase domain containing 2
mm9_v1_chr11_-_86887549_86887638	0.781399	ACAUUCA	BC016541|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK011487|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK013864|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK016023|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK167812|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	NM_025638|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1
mm9_v1_chr1_-_164670534_164670687	0.77552	ACAUUCA	AK013732|Prrc2c|226562|proline-rich coiled-coil 2C	AK077748|Prrc2c|226562|proline-rich coiled-coil 2C	BC053406|Prrc2c|226562|proline-rich coiled-coil 2C	BC064009|Prrc2c|226562|proline-rich coiled-coil 2C	BC021412|Prrc2c|226562|proline-rich coiled-coil 2C	BC037745|Prrc2c|226562|proline-rich coiled-coil 2C	BC080672|Prrc2c|226562|proline-rich coiled-coil 2C	AK030766|Prrc2c|226562|proline-rich coiled-coil 2C	AK135245|Prrc2c|226562|proline-rich coiled-coil 2C	BC006723|Prrc2c|226562|proline-rich coiled-coil 2C	AK007762|Prrc2c|226562|proline-rich coiled-coil 2C	AK167018|Prrc2c|226562|proline-rich coiled-coil 2C	AK082487|Prrc2c|226562|proline-rich coiled-coil 2C	AK166509|Prrc2c|226562|proline-rich coiled-coil 2C	NM_001081290|Prrc2c|226562|proline-rich coiled-coil 2C
mm9_v1_chr7_-_91827857_91827907	0.772586	ACAUUCA	AK002775|Zfand6|65098|zinc finger, AN1-type domain 6	NM_022985|Zfand6|65098|zinc finger, AN1-type domain 6	AK144902|Zfand6|65098|zinc finger, AN1-type domain 6	AK009403|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chrX_+_71550301_71550377	0.772449	ACAUUCA	NM_010273|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr6_+_54631644_54631765	0.724766	ACAUUCA	BC042507|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	BC052467|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019120|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019128|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK043452|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	NM_026629|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene
mm9_v1_chr3_+_95462640_95462703	0.722056	ACAUUCA	NM_008562|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr8_-_49075884_49075954	0.721444	ACAUUCA	AK147648|Wwc2|52357|WW, C2 and coiled-coil domain containing 2	BC067050|Wwc2|52357|WW, C2 and coiled-coil domain containing 2	NM_133791|Wwc2|52357|WW, C2 and coiled-coil domain containing 2	AB045323|Wwc2|52357|WW, C2 and coiled-coil domain containing 2
mm9_v1_chr11_-_79068138_79068204	0.711877	ACAUUCA	AK150600|Wsb1|78889|WD repeat and SOCS box-containing 1	AK159905|Wsb1|78889|WD repeat and SOCS box-containing 1	AK146752|Wsb1|78889|WD repeat and SOCS box-containing 1	AK150394|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167942|Wsb1|78889|WD repeat and SOCS box-containing 1	AK169058|Wsb1|78889|WD repeat and SOCS box-containing 1	AK019206|Wsb1|78889|WD repeat and SOCS box-containing 1	AK152545|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167174|Wsb1|78889|WD repeat and SOCS box-containing 1	AK145974|Wsb1|78889|WD repeat and SOCS box-containing 1	AK167394|Wsb1|78889|WD repeat and SOCS box-containing 1	AK168468|Wsb1|78889|WD repeat and SOCS box-containing 1	AK168565|Wsb1|78889|WD repeat and SOCS box-containing 1	NM_019653|Wsb1|78889|WD repeat and SOCS box-containing 1
mm9_v1_chr9_-_66643210_66643296	0.710032	ACAUUCA	AK162585|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	AK049828|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	NM_177583|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	AK028521|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	BC079659|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)	AK154847|Aph1b|208117|anterior pharynx defective 1b homolog (C. elegans)
mm9_v1_chr5_-_73647856_73647874	0.694123	ACAUUCA	AK164590|Fryl|72313|furry homolog-like (Drosophila)	NM_028194|Fryl|72313|furry homolog-like (Drosophila)
mm9_v1_chr12_+_53800369_53800393	0.693599	ACAUUCA	AK147248|Akap6|238161|A kinase (PRKA) anchor protein 6	AK147371|Akap6|238161|A kinase (PRKA) anchor protein 6	NM_198111|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr5_+_29895742_29895846	0.693491	ACAUUCA	AK046056|Ube3c|100763|ubiquitin protein ligase E3C	NM_133907|Ube3c|100763|ubiquitin protein ligase E3C	AK122187|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr5_-_36873134_36873271	0.684914	ACAUUCA	AB064521|Tbc1d14|100855|TBC1 domain family, member 14	BC011420|Tbc1d14|100855|TBC1 domain family, member 14	AK013092|Tbc1d14|100855|TBC1 domain family, member 14	NM_001113364|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr9_-_36954842_36954852	0.67645	ACAUUCA	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr9_-_54349409_54349432	0.675957	ACAUUCA	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr4_-_6917628_6917956	0.670859	ACAUUCA	AK161718|Tox|252838|thymocyte selection-associated high mobility group box	AK161578|Tox|252838|thymocyte selection-associated high mobility group box	AF472514|Tox|252838|thymocyte selection-associated high mobility group box	AK029694|Tox|252838|thymocyte selection-associated high mobility group box	AK133397|Tox|252838|thymocyte selection-associated high mobility group box	BC080732|Tox|252838|thymocyte selection-associated high mobility group box	AK038671|Tox|252838|thymocyte selection-associated high mobility group box	NM_145711|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr2_+_138082301_138082378	0.669192	ACAUUCA	NM_001025431|Btbd3|228662|BTB (POZ) domain containing 3	AK052530|Btbd3|228662|BTB (POZ) domain containing 3	AK161924|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr8_+_75247184_75247186	0.660365	ACAUUCA	AK146847|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK159076|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK169433|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_001113248|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_009188|Sin3b|20467|transcriptional regulator, SIN3B (yeast)
mm9_v1_chr14_+_21493519_21493615	0.659984	ACAUUCA	AK036519|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_001168273|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_172596|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK011880|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK122199|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	BC040370|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)
mm9_v1_chr12_+_25516433_25516564	0.658378	ACAUUCA	NM_001083341|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	NM_026037|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK076045|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK012931|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031682|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031824|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK033106|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK034873|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	BC025020|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK215458|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB297383|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB305046|Mboat2|67216|membrane bound O-acyltransferase domain containing 2
mm9_v1_chr6_-_92431385_92431385	0.653533	ACAUUCA	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr3_+_156224757_156225137	0.651764	ACAUUCA	AK147253|Negr1|320840|neuronal growth regulator 1	NM_001039094|Negr1|320840|neuronal growth regulator 1	AK035218|Negr1|320840|neuronal growth regulator 1	NM_177274|Negr1|320840|neuronal growth regulator 1	AK030503|Negr1|320840|neuronal growth regulator 1	BC146005|Negr1|320840|neuronal growth regulator 1	BC146007|Negr1|320840|neuronal growth regulator 1	AK142298|Negr1|320840|neuronal growth regulator 1	AJ487032|Negr1|320840|neuronal growth regulator 1
mm9_v1_chr17_-_80606644_80606647	0.648397	ACAUUCA	AK034952|Srsf7|225027|serine/arginine-rich splicing factor 7	AK137795|Srsf7|225027|serine/arginine-rich splicing factor 7	AK168355|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_001195485|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_001195486|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_001195487|Srsf7|225027|serine/arginine-rich splicing factor 7	NM_146083|Srsf7|225027|serine/arginine-rich splicing factor 7
mm9_v1_chr2_-_32286633_32286688	0.643783	ACAUUCA	BC066998|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164358|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr1_+_62749850_62750115	0.640891	ACAUUCA	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr10_-_85379640_85379767	0.635547	ACAUUCA	AK028414|Prdm4|72843|PR domain containing 4	NM_181650|Prdm4|72843|PR domain containing 4
mm9_v1_chr3_-_104855832_104856063	0.634886	ACAUUCA	BC003236|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK145085|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK051259|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK030438|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK129359|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163332|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163333|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK029901|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_030249|Cttnbp2nl|80281|CTTNBP2 N-terminal like
mm9_v1_chr13_-_89881946_89882116	0.634015	ACAUUCA	BC021652|Vcan|13003|versican	AK163927|Vcan|13003|versican	AK135324|Vcan|13003|versican	AK032794|Vcan|13003|versican	NM_001081249|Vcan|13003|versican	NM_001134474|Vcan|13003|versican	NM_001134475|Vcan|13003|versican	NM_019389|Vcan|13003|versican	NM_172955|Vcan|13003|versican
mm9_v1_chr2_-_44968728_44968798	0.631012	ACAUUCA	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr6_+_149257918_149258112	0.616527	ACAUUCA	NM_026054|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK013408|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK017376|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK220403|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK031989|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK031797|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	BC139435|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	BC139436|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK031526|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene	AK079405|2810474O19Rik|67246|RIKEN cDNA 2810474O19 gene
mm9_v1_chr3_+_152058937_152059038	0.614418	ACAUUCA	NM_001080755|Zzz3|108946|zinc finger, ZZ domain containing 3	AK131150|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chr4_+_48598013_48598089	0.611842	ACAUUCA	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr9_-_69608633_69608746	0.61075	ACAUUCA	X92592|Foxb1|64290|forkhead box B1	U04198|Foxb1|64290|forkhead box B1	U90538|Foxb1|64290|forkhead box B1	NM_022378|Foxb1|64290|forkhead box B1
mm9_v1_chr3_+_98186380_98186408	0.609083	ACAUUCA	AK034880|Zfp697|242109|zinc finger protein 697	AK086791|Zfp697|242109|zinc finger protein 697	NM_172863|Zfp697|242109|zinc finger protein 697
mm9_v1_chr15_+_9070294_9070420	0.604535	ACAUUCA	AK036527|Lmbrd2|320506|LMBR1 domain containing 2	AK079450|Lmbrd2|320506|LMBR1 domain containing 2	NM_177178|Lmbrd2|320506|LMBR1 domain containing 2	BC120727|Lmbrd2|320506|LMBR1 domain containing 2	BC125421|Lmbrd2|320506|LMBR1 domain containing 2	AK153728|Lmbrd2|320506|LMBR1 domain containing 2	BC095971|Lmbrd2|320506|LMBR1 domain containing 2
mm9_v1_chr2_+_76513326_76513402	0.603469	ACAUUCA	BC031110|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	NM_031256|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm9_v1_chr14_-_103746016_103746030	0.60271	ACAUUCA	AK149225|Mycbp2|105689|MYC binding protein 2	NM_207215|Mycbp2|105689|MYC binding protein 2	AK048441|Mycbp2|105689|MYC binding protein 2	AK081652|Mycbp2|105689|MYC binding protein 2
mm9_v1_chr10_+_7400978_7401034	0.601878	ACAUUCA	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chr10_+_110601745_110601988	0.600298	ACAUUCA	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr16_+_35983402_35983472	0.597644	ACAUUCA	AK169464|Kpna1|16646|karyopherin (importin) alpha 1	AK169311|Kpna1|16646|karyopherin (importin) alpha 1	AK169348|Kpna1|16646|karyopherin (importin) alpha 1	AK028307|Kpna1|16646|karyopherin (importin) alpha 1	AK154800|Kpna1|16646|karyopherin (importin) alpha 1	AK028259|Kpna1|16646|karyopherin (importin) alpha 1	NM_008465|Kpna1|16646|karyopherin (importin) alpha 1	U20619|Kpna1|16646|karyopherin (importin) alpha 1	BC006771|Kpna1|16646|karyopherin (importin) alpha 1
mm9_v1_chr3_-_30868320_30868353	0.59244	ACAUUCA	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr9_+_57408729_57408820	0.591696	ACAUUCA	AK003080|Scamp2|24044|secretory carrier membrane protein 2	AK161002|Scamp2|24044|secretory carrier membrane protein 2	NM_022813|Scamp2|24044|secretory carrier membrane protein 2	AF295402|Scamp2|24044|secretory carrier membrane protein 2	AK171766|Scamp2|24044|secretory carrier membrane protein 2	BC003452|Scamp2|24044|secretory carrier membrane protein 2	BC014751|Scamp2|24044|secretory carrier membrane protein 2
mm9_v1_chr2_+_153117135_153117203	0.586703	ACAUUCA	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr17_-_80879792_80879792	0.583985	ACAUUCA	AK140310|Sos1|20662|son of sevenless homolog 1 (Drosophila)	NM_009231|Sos1|20662|son of sevenless homolog 1 (Drosophila)
mm9_v1_chr2_-_38781939_38781980	0.582505	ACAUUCA	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr17_+_73457324_73457400	0.580388	ACAUUCA	NM_001081071|Lclat1|225010|lysocardiolipin acyltransferase 1	NM_001177967|Lclat1|225010|lysocardiolipin acyltransferase 1	NM_001177968|Lclat1|225010|lysocardiolipin acyltransferase 1	AK144580|Lclat1|225010|lysocardiolipin acyltransferase 1	BC147499|Lclat1|225010|lysocardiolipin acyltransferase 1	BC150884|Lclat1|225010|lysocardiolipin acyltransferase 1	BC158076|Lclat1|225010|lysocardiolipin acyltransferase 1	BC158079|Lclat1|225010|lysocardiolipin acyltransferase 1
mm9_v1_chr7_+_117771170_117771184	0.580239	ACAUUCA	AK144181|Adm|11535|adrenomedullin	AK144649|Adm|11535|adrenomedullin	AK144600|Adm|11535|adrenomedullin	AK171066|Adm|11535|adrenomedullin	NM_009627|Adm|11535|adrenomedullin	U77630|Adm|11535|adrenomedullin	BC052665|Adm|11535|adrenomedullin
mm9_v1_chr8_+_63111621_63111675	0.578371	ACAUUCA	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr11_-_78510874_78510941	0.576906	ACAUUCA	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr7_-_30836383_30836414	0.576213	ACAUUCA	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr3_-_79371600_79371778	0.572742	ACAUUCA	NM_001162999|Fnip2|329679|folliculin interacting protein 2
mm9_v1_chr14_-_105576480_105576547	0.566452	ACAUUCA	BC066051|Rbm26|74213|RNA binding motif protein 26	AK051686|Rbm26|74213|RNA binding motif protein 26	BC049360|Rbm26|74213|RNA binding motif protein 26	AK172039|Rbm26|74213|RNA binding motif protein 26	AK139077|Rbm26|74213|RNA binding motif protein 26	NM_134077|Rbm26|74213|RNA binding motif protein 26
mm9_v1_chr7_+_80520360_80520429	0.564375	ACAUUCA	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chrX_+_148613496_148613589	0.561265	ACAUUCA	AK155453|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001005475|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr12_+_81619976_81620155	0.558396	ACAUUCA	NM_001081421|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB045325|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AK138883|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB175683|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
mm9_v1_chr2_+_3035629_3035684	0.548935	ACAUUCA	NM_001081161|Fam171a1|269233|family with sequence similarity 171, member A1	AK032237|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr11_-_20731016_20731238	0.548897	ACAUUCA	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr7_+_104728398_104728430	0.547672	ACAUUCA	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr8_+_109817355_109817761	0.544779	ACAUUCA	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr19_+_23833310_23833547	0.542907	ACAUUCA	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr5_+_108494692_108494781	0.53963	ACAUUCA	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chr12_-_85534964_85534979	0.539013	ACAUUCA	AK155547|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK171272|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163502|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK081554|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr2_+_48669628_48669670	0.52722	ACAUUCA	NM_007396|Acvr2a|11480|activin receptor IIA	AK081022|Acvr2a|11480|activin receptor IIA
mm9_v1_chr2_+_91297678_91297857	0.521903	ACAUUCA	NM_001145857|Lrp4|228357|low density lipoprotein receptor-related protein 4	NM_172668|Lrp4|228357|low density lipoprotein receptor-related protein 4	BC132240|Lrp4|228357|low density lipoprotein receptor-related protein 4	AF247637|Lrp4|228357|low density lipoprotein receptor-related protein 4
mm9_v1_chr12_+_109417947_109418052	0.521638	ACAUUCA	NM_009832|Ccnk|12454|cyclin K	AK089386|Ccnk|12454|cyclin K	AK146711|Ccnk|12454|cyclin K	AK154765|Ccnk|12454|cyclin K	AK154679|Ccnk|12454|cyclin K	BC027297|Ccnk|12454|cyclin K
mm9_v1_chr19_+_22213516_22213606	0.520865	ACAUUCA	AK173218|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544532|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544533|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544534|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544535|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544536|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035239|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035240|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035241|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035242|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035243|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr9_-_45792865_45792953	0.51735	ACAUUCA	AK164573|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK012116|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	U57747|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK012164|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC003771|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	BC002037|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	BC056211|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	AK011326|2610005M20Rik|70308|RIKEN cDNA 2610005M20 gene	AK153424|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	NM_008775|Pafah1b2|18475|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm9_v1_chr6_-_149050201_149050210	0.516218	ACAUUCA	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr3_-_119486305_119486325	0.511962	ACAUUCA	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr2_+_128891655_128891754	0.511218	ACAUUCA	NM_027192|Ttl|69737|tubulin tyrosine ligase	BC024414|Ttl|69737|tubulin tyrosine ligase	AK084377|Ttl|69737|tubulin tyrosine ligase
mm9_v1_chr10_-_49508472_49508559	0.507102	ACAUUCA	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr2_-_26264694_26264752	0.498429	ACAUUCA	AK170786|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AF226683|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC057566|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC080295|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC052717|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	NM_033134|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK170812|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK080075|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK047245|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK158135|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK154097|Inpp5e|64436|inositol polyphosphate-5-phosphatase E
mm9_v1_chr10_+_52137324_52137453	0.496832	ACAUUCA	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr3_-_127540408_127540409	0.492533	ACAUUCA	NM_145964|Ap1ar|211556|adaptor-related protein complex 1 associated regulatory protein
mm9_v1_chr2_+_138104219_138104260	0.491237	ACAUUCA	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr11_+_17059297_17059300	0.489842	ACAUUCA	NM_024459|Ppp3r1|19058|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm9_v1_chr5_+_33678157_33678258	0.484991	ACAUUCA	AK145800|Maea|59003|macrophage erythroblast attacher	AK168788|Maea|59003|macrophage erythroblast attacher	AK049424|Maea|59003|macrophage erythroblast attacher	AK088854|Maea|59003|macrophage erythroblast attacher	AK152523|Maea|59003|macrophage erythroblast attacher	AK169149|Maea|59003|macrophage erythroblast attacher	NM_021500|Maea|59003|macrophage erythroblast attacher	AK034859|Maea|59003|macrophage erythroblast attacher	BC058687|Maea|59003|macrophage erythroblast attacher	BC039054|Maea|59003|macrophage erythroblast attacher	AK191436|Maea|59003|macrophage erythroblast attacher	AK218361|Maea|59003|macrophage erythroblast attacher	AK007307|Maea|59003|macrophage erythroblast attacher	AF263247|Maea|59003|macrophage erythroblast attacher
mm9_v1_chr5_-_46248719_46248778	0.481067	ACAUUCA	BC066151|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK041987|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043498|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK154398|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK155421|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK083689|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043845|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	BC138563|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_001163073|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_178142|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chrX_+_100551808_100551914	0.480483	ACAUUCA	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr18_-_6516073_6516084	0.472659	ACAUUCA	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr4_+_109015660_109015680	0.469419	ACAUUCA	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr6_+_110595586_110595619	0.457867	ACAUUCA	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr2_-_103637795_103637829	0.456689	ACAUUCA	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr15_-_39775173_39775370	0.455426	ACAUUCA	AK050512|Lrp12|239393|low density lipoprotein-related protein 12	NM_172814|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr2_+_76244578_76244594	0.453596	ACAUUCA	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr2_+_150574777_150574886	0.45098	ACAUUCA	AK030789|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	NM_172117|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	BC038126|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	BC028318|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	AK156685|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6
mm9_v1_chr11_-_97141747_97141925	0.449545	ACAUUCA	BC009653|Npepps|19155|aminopeptidase puromycin sensitive	AK138772|Npepps|19155|aminopeptidase puromycin sensitive	U35646|Npepps|19155|aminopeptidase puromycin sensitive	BC086798|Npepps|19155|aminopeptidase puromycin sensitive	BC098212|Npepps|19155|aminopeptidase puromycin sensitive	NM_008942|Npepps|19155|aminopeptidase puromycin sensitive
mm9_v1_chr9_-_104165221_104165274	0.446838	ACAUUCA	AK165345|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13	NM_001163026|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13	AK083408|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13	AK147911|Dnajc13|235567|DnaJ (Hsp40) homolog, subfamily C, member 13
mm9_v1_chr11_+_29273673_29273774	0.445805	ACAUUCA	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr13_+_43711165_43711165	0.445259	ACAUUCA	NM_183204|Rnf182|328234|ring finger protein 182
mm9_v1_chr14_-_96918064_96918252	0.443368	ACAUUCA	AK031932|Klhl1|93688|kelch-like 1 (Drosophila)	AF252281|Klhl1|93688|kelch-like 1 (Drosophila)	BC094584|Klhl1|93688|kelch-like 1 (Drosophila)	NM_053105|Klhl1|93688|kelch-like 1 (Drosophila)
mm9_v1_chr11_+_72503487_72503520	0.441865	ACAUUCA	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr5_+_36235967_36236084	0.438247	ACAUUCA	BC050814|Afap1|70292|actin filament associated protein 1	NM_027373|Afap1|70292|actin filament associated protein 1	AK161385|Afap1|70292|actin filament associated protein 1	AK080756|Afap1|70292|actin filament associated protein 1	AK129483|Afap1|70292|actin filament associated protein 1	AK147706|Afap1|70292|actin filament associated protein 1
mm9_v1_chr5_+_130647678_130647743	0.431042	ACAUUCA	NM_001199059|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	AF093590|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1	AK146734|Rabgef1|56715|RAB guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr14_-_109313447_109313461	0.428499	ACAUUCA	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr15_-_43002356_43002397	0.427392	ACAUUCA	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr11_-_74537877_74537918	0.425745	ACAUUCA	NM_013625|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr6_+_143115732_143115821	0.424705	ACAUUCA	AK051039|Etnk1|75320|ethanolamine kinase 1	AK044502|Etnk1|75320|ethanolamine kinase 1	NM_029250|Etnk1|75320|ethanolamine kinase 1	AK016135|Etnk1|75320|ethanolamine kinase 1	AK031560|Etnk1|75320|ethanolamine kinase 1	AK033268|Etnk1|75320|ethanolamine kinase 1	AK164928|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr11_-_97560943_97560996	0.42463	ACAUUCA	NM_001163308|Pcgf2|22658|polycomb group ring finger 2
mm9_v1_chr10_+_94977721_94977835	0.423351	ACAUUCA	AK005302|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK161968|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK005788|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC067069|Ube2n|93765|ubiquitin-conjugating enzyme E2N	NM_080560|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AY039837|Ube2n|93765|ubiquitin-conjugating enzyme E2N	Y09873|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC034898|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC052203|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC132630|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC138211|Ube2n|93765|ubiquitin-conjugating enzyme E2N
mm9_v1_chr7_+_90015842_90015842	0.418093	ACAUUCA	NM_175366|Mex3b|108797|mex3 homolog B (C. elegans)
mm9_v1_chr1_-_13364092_13364163	0.413096	ACAUUCA	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr19_-_60019520_60019556	0.410899	ACAUUCA	AK015534|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001164367|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr1_+_64579358_64579513	0.406867	ACAUUCA	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr1_-_138242666_138242682	0.406636	ACAUUCA	AK016014|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1	AK028542|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1	AK053092|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1	NM_001081360|Camsap1l1|67886|calmodulin regulated spectrin-associated protein 1-like 1
mm9_v1_chr2_+_158235580_158235588	0.401245	ACAUUCA	NM_177658|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr9_-_44689356_44689381	0.399347	ACAUUCA	NM_001081049|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1
mm9_v1_chrX_-_39265047_39265129	0.398419	ACAUUCA	AK140950|Thoc2|331401|THO complex 2	AK138023|Thoc2|331401|THO complex 2	NM_001033422|Thoc2|331401|THO complex 2	AK137966|Thoc2|331401|THO complex 2
mm9_v1_chr10_+_20032269_20032343	0.393039	ACAUUCA	NM_001025392|Bclaf1|72567|BCL2-associated transcription factor 1	NM_001025393|Bclaf1|72567|BCL2-associated transcription factor 1	NM_153787|Bclaf1|72567|BCL2-associated transcription factor 1	AK161692|Bclaf1|72567|BCL2-associated transcription factor 1	BC086624|Bclaf1|72567|BCL2-associated transcription factor 1	AK162896|Bclaf1|72567|BCL2-associated transcription factor 1	AK141834|Bclaf1|72567|BCL2-associated transcription factor 1	AK149724|Bclaf1|72567|BCL2-associated transcription factor 1	AK150017|Bclaf1|72567|BCL2-associated transcription factor 1	AK088741|Bclaf1|72567|BCL2-associated transcription factor 1	AK011802|Bclaf1|72567|BCL2-associated transcription factor 1	BC028963|Bclaf1|72567|BCL2-associated transcription factor 1	BC034300|Bclaf1|72567|BCL2-associated transcription factor 1	BC029682|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr19_-_28085534_28085655	0.390753	ACAUUCA	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr2_+_57090045_57090088	0.390117	ACAUUCA	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr2_-_59963796_59963833	0.388216	ACAUUCA	NM_001001182|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK147737|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr16_-_85803359_85803359	0.387632	ACAUUCA	NM_009621|Adamts1|11504|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm9_v1_chr9_-_65756482_65756602	0.385915	ACAUUCA	AF539614|Trip4|56404|thyroid hormone receptor interactor 4	AK016170|Trip4|56404|thyroid hormone receptor interactor 4	AK139423|Trip4|56404|thyroid hormone receptor interactor 4	AK166192|Trip4|56404|thyroid hormone receptor interactor 4	NM_019797|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr15_-_79664645_79664773	0.383552	ACAUUCA	BC011199|Cbx6|494448|chromobox homolog 6	BC048240|Cbx6|494448|chromobox homolog 6	AK004679|Cbx6|494448|chromobox homolog 6	AK090253|Cbx6|494448|chromobox homolog 6	AK146048|Cbx6|494448|chromobox homolog 6	AK146103|Cbx6|494448|chromobox homolog 6	AY394488|Npcd|504193|neuronal pentraxin chromo domain	AY394489|Npcd|504193|neuronal pentraxin chromo domain	AY395907|Npcd|504193|neuronal pentraxin chromo domain	AK035250|Cbx6|494448|chromobox homolog 6	NM_001013360|Npcd|504193|neuronal pentraxin chromo domain	NM_001013362|Npcd|504193|neuronal pentraxin chromo domain	NM_028763|Cbx6|494448|chromobox homolog 6
mm9_v1_chr2_-_104334610_104334646	0.382613	ACAUUCA	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr3_+_67696141_67696177	0.373233	ACAUUCA	AK052136|Iqcj|208426|IQ motif containing J	NM_001113419|Iqcj-schip1|100505386|IQ motif containing J-schwannomin interacting protein 1 read-through transcript	NM_177585|Iqcj|208426|IQ motif containing J	BC107305|Iqcj|208426|IQ motif containing J	BC107306|Iqcj|208426|IQ motif containing J
mm9_v1_chr17_+_26852581_26852657	0.372276	ACAUUCA	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr13_-_18035913_18036071	0.372057	ACAUUCA	AK013881|Rala|56044|v-ral simian leukemia viral oncogene homolog A (ras related)	BC031741|Rala|56044|v-ral simian leukemia viral oncogene homolog A (ras related)	NM_019491|Rala|56044|v-ral simian leukemia viral oncogene homolog A (ras related)
mm9_v1_chr11_+_44332426_44332513	0.369718	ACAUUCA	AK014408|Rnf145|74315|ring finger protein 145	NM_028862|Rnf145|74315|ring finger protein 145	AK043002|Rnf145|74315|ring finger protein 145
mm9_v1_chr3_-_9610062_9610137	0.362413	ACAUUCA	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr11_-_118947424_118947559	0.362228	ACAUUCA	BC117801|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC117802|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	U63387|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC045162|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC018304|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	NM_007625|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)
mm9_v1_chr13_-_99696254_99696340	0.360551	ACAUUCA	AK030580|Tnpo1|238799|transportin 1	AK087194|Tnpo1|238799|transportin 1	AK037001|Tnpo1|238799|transportin 1	AK029953|Tnpo1|238799|transportin 1	NM_178716|Tnpo1|238799|transportin 1
mm9_v1_chr9_+_106073255_106073259	0.359783	ACAUUCA	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr11_-_97561808_97561839	0.359713	ACAUUCA	NM_009545|Pcgf2|22658|polycomb group ring finger 2
mm9_v1_chr5_+_64040341_64040341	0.359376	ACAUUCA	AK033855|3110047P20Rik|319807|RIKEN cDNA 3110047P20 gene	NM_177006|3110047P20Rik|319807|RIKEN cDNA 3110047P20 gene
mm9_v1_chr8_+_96334452_96334737	0.359196	ACAUUCA	AK160434|Gnao1|14681|guanine nucleotide binding protein, alpha O	AK035907|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_001113384|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_010308|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr1_-_52784161_52784228	0.356797	ACAUUCA	AK035995|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_133829|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_178081|Mfsd6|98682|major facilitator superfamily domain containing 6	AK171946|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr6_-_113145321_113145377	0.35436	ACAUUCA	AK220449|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	BC085130|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	AK046437|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4	NM_177763|Lhfpl4|269788|lipoma HMGIC fusion partner-like protein 4
mm9_v1_chr5_+_142877419_142877473	0.352632	ACAUUCA	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr9_-_53475610_53475616	0.351879	ACAUUCA	AK031955|Cul5|75717|cullin 5	NM_001161618|Cul5|75717|cullin 5	NM_027807|Cul5|75717|cullin 5
mm9_v1_chr5_+_123844794_123844938	0.350207	ACAUUCA	AK047475|Mlxip|208104|MLX interacting protein	NM_133917|Mlxip|208104|MLX interacting protein	NM_177582|Mlxip|208104|MLX interacting protein	BC137770|Mlxip|208104|MLX interacting protein	AY968204|Mlxip|208104|MLX interacting protein
mm9_v1_chr19_-_12576485_12576634	0.347482	ACAUUCA	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr1_-_108610861_108610866	0.345704	ACAUUCA	AK049473|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_009741|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_177410|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr1_-_186823350_186823427	0.344878	ACAUUCA	AB185282|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	BC112400|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	AF453686|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	NM_145515|Mark1|226778|MAP/microtubule affinity-regulating kinase 1
mm9_v1_chr16_-_17201556_17201596	0.339593	ACAUUCA	AK165620|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC106149|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC093503|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK167847|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC049075|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AJ130961|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	NM_009456|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	X97042|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK152522|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK007265|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3
mm9_v1_chr16_-_32868355_32868453	0.335524	ACAUUCA	BC057307|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK042428|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170223|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK122221|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK030368|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC060601|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	NM_172615|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170002|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK171583|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC067390|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene
mm9_v1_chr7_+_97278722_97279067	0.334883	ACAUUCA	AK170373|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC025566|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	NM_146194|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC057683|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC021491|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK144960|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC023843|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK220291|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC011470|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK162360|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AY206701|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr6_-_39327637_39327722	0.334403	ACAUUCA	BC099673|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK076213|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK077836|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK167716|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	BC005744|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK145242|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	NM_028123|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm9_v1_chr10_-_122633922_122634056	0.330774	ACAUUCA	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr16_-_28929698_28929810	0.326596	ACAUUCA	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr13_-_48966240_48966272	0.321553	ACAUUCA	BC051633|Phf2|18676|PHD finger protein 2	AF043726|Phf2|18676|PHD finger protein 2	NM_011078|Phf2|18676|PHD finger protein 2
mm9_v1_chr10_+_70810540_70810588	0.318073	ACAUUCA	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr5_+_139676589_139676634	0.315856	ACAUUCA	AK014585|Sun1|77053|Sad1 and UNC84 domain containing 1	AK036187|Sun1|77053|Sad1 and UNC84 domain containing 1	AK161959|Sun1|77053|Sad1 and UNC84 domain containing 1	AK162533|Sun1|77053|Sad1 and UNC84 domain containing 1	AK167686|Sun1|77053|Sad1 and UNC84 domain containing 1	BC048156|Sun1|77053|Sad1 and UNC84 domain containing 1	BC047928|Sun1|77053|Sad1 and UNC84 domain containing 1	NM_024451|Sun1|77053|Sad1 and UNC84 domain containing 1	AK160281|Sun1|77053|Sad1 and UNC84 domain containing 1
mm9_v1_chr4_-_91066674_91066674	0.314359	ACAUUCA	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr15_-_79635138_79635146	0.308332	ACAUUCA	BC058962|Nptxr|73340|neuronal pentraxin receptor	BC098199|Nptxr|73340|neuronal pentraxin receptor	NM_030689|Nptxr|73340|neuronal pentraxin receptor	AK147605|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr1_+_132613903_132614127	0.301799	ACAUUCA	AK036938|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK036991|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	NM_178691|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC139034|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK044678|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC099948|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK053730|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm9_v1_chr12_+_84973146_84973375	0.300833	ACAUUCA	NM_027349|Rbm25|67039|RNA binding motif protein 25	AK011403|Rbm25|67039|RNA binding motif protein 25	AK164367|Rbm25|67039|RNA binding motif protein 25	AK151910|Rbm25|67039|RNA binding motif protein 25	AK144341|AA645497|100499479|expressed sequence AA645497
mm9_v1_chr16_+_22009551_22009592	0.299815	ACAUUCA	NM_029457|Senp2|75826|SUMO/sentrin specific peptidase 2	AK031030|Senp2|75826|SUMO/sentrin specific peptidase 2	AK015987|Senp2|75826|SUMO/sentrin specific peptidase 2	BC031652|Senp2|75826|SUMO/sentrin specific peptidase 2	AF368904|Senp2|75826|SUMO/sentrin specific peptidase 2
mm9_v1_chr15_+_5093855_5093914	0.298471	ACAUUCA	NM_001013367|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	AK160612|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	AK147811|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	BC086695|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	AY885266|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit
mm9_v1_chr1_+_141318927_141318961	0.296365	ACAUUCA	NM_172643|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog	AK036544|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog
mm9_v1_chr11_-_89163840_89163872	0.293871	ACAUUCA	AK146488|Nog|18121|noggin	NM_008711|Nog|18121|noggin
mm9_v1_chr9_+_104472090_104472120	0.293842	ACAUUCA	AK043692|Cpne4|74020|copine IV	AK014396|Cpne4|74020|copine IV	BC043087|Cpne4|74020|copine IV	BC063081|Cpne4|74020|copine IV	NM_028719|Cpne4|74020|copine IV
mm9_v1_chr4_+_132194931_132195032	0.293239	ACAUUCA	AK164591|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_210071|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_211357|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK144653|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_010166|Eya3|14050|eyes absent 3 homolog (Drosophila)	BC052860|Eya3|14050|eyes absent 3 homolog (Drosophila)	U81604|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK017913|5830409B07Rik|76020|RIKEN cDNA 5830409B07 gene	BC063259|Eya3|14050|eyes absent 3 homolog (Drosophila)
mm9_v1_chr4_+_59202363_59202463	0.292639	ACAUUCA	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr9_+_21351307_21351499	0.292221	ACAUUCA	NM_021531|Carm1|59035|coactivator-associated arginine methyltransferase 1	NM_153141|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC036974|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158242|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC071267|Carm1|59035|coactivator-associated arginine methyltransferase 1	AF117887|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158757|Carm1|59035|coactivator-associated arginine methyltransferase 1
mm9_v1_chr11_+_77499638_77499656	0.289996	ACAUUCA	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr13_-_104124527_104124573	0.287821	ACAUUCA	AK081750|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK040801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK044801|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK090136|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK046702|Mast4|328329|microtubule associated serine/threonine kinase family member 4	AK077719|Mast4|328329|microtubule associated serine/threonine kinase family member 4	NM_175171|Mast4|328329|microtubule associated serine/threonine kinase family member 4
mm9_v1_chr13_+_112476313_112476385	0.286094	ACAUUCA	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr3_+_114606995_114607339	0.283906	ACAUUCA	AK049612|Olfm3|229759|olfactomedin 3	AK044605|Olfm3|229759|olfactomedin 3	AK045482|Olfm3|229759|olfactomedin 3	AK038569|Olfm3|229759|olfactomedin 3	AK079315|Olfm3|229759|olfactomedin 3	AK044325|Olfm3|229759|olfactomedin 3	AK137414|Olfm3|229759|olfactomedin 3	AF442825|Olfm3|229759|olfactomedin 3	NM_153458|Olfm3|229759|olfactomedin 3	BC112422|Olfm3|229759|olfactomedin 3	BC113129|Olfm3|229759|olfactomedin 3
mm9_v1_chr12_-_47919695_47919761	0.282824	ACAUUCA	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr13_+_49748707_49748855	0.276698	ACAUUCA	AK147172|Nol8|70930|nucleolar protein 8	NM_001081350|Nol8|70930|nucleolar protein 8	BC125575|Nol8|70930|nucleolar protein 8	BC125579|Nol8|70930|nucleolar protein 8	AK029961|Nol8|70930|nucleolar protein 8	BC049166|Nol8|70930|nucleolar protein 8
mm9_v1_chr15_-_37722161_37722182	0.27419	ACAUUCA	AK048440|Ncald|52589|neurocalcin delta	NM_134094|Ncald|52589|neurocalcin delta
mm9_v1_chr6_-_85452851_85452987	0.272313	ACAUUCA	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr4_+_123582074_123582311	0.264683	ACAUUCA	BC048478|Mycbp|56309|c-myc binding protein	AK033289|Mycbp|56309|c-myc binding protein	AK077633|Mycbp|56309|c-myc binding protein	AK037661|Mycbp|56309|c-myc binding protein	AK077762|Mycbp|56309|c-myc binding protein	AK077995|Mycbp|56309|c-myc binding protein	AK145773|Mycbp|56309|c-myc binding protein	NM_019660|Mycbp|56309|c-myc binding protein	BC028344|Mycbp|56309|c-myc binding protein	AB015858|Mycbp|56309|c-myc binding protein
mm9_v1_chr3_+_88336316_88336316	0.263906	ACAUUCA	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr1_-_63160764_63160840	0.263265	ACAUUCA	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr15_-_79762947_79763095	0.262731	ACAUUCA	AB221539|Cbx7|52609|chromobox homolog 7	AK045714|Cbx7|52609|chromobox homolog 7	NM_144811|Cbx7|52609|chromobox homolog 7
mm9_v1_chr6_-_92656148_92656177	0.259965	ACAUUCA	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr2_+_154262114_154262265	0.256874	ACAUUCA	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr18_+_42671130_42671146	0.255482	ACAUUCA	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr5_-_36925021_36925045	0.254572	ACAUUCA	BC042515|Tbc1d14|100855|TBC1 domain family, member 14	NM_133910|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr11_-_59285954_59285975	0.252289	ACAUUCA	BC050078|Zfp867|237775|zinc finger protein 867	AK132062|Zfp867|237775|zinc finger protein 867	NM_178417|Zfp867|237775|zinc finger protein 867
mm9_v1_chr13_+_5860701_5860744	0.247588	ACAUUCA	NM_011803|Klf6|23849|Kruppel-like factor 6	AY027436|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr4_-_59562054_59562263	0.244734	ACAUUCA	BC057641|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	BC006638|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	AK033732|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	AK088560|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	NM_144904|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)	NM_178164|Rod1|230257|ROD1 regulator of differentiation 1 (S. pombe)
mm9_v1_chr10_+_92623587_92623703	0.243528	ACAUUCA	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr3_+_97817440_97817471	0.243107	ACAUUCA	AK157200|Notch2|18129|Notch gene homolog 2 (Drosophila)	D32210|Notch2|18129|Notch gene homolog 2 (Drosophila)	NM_010928|Notch2|18129|Notch gene homolog 2 (Drosophila)
mm9_v1_chr2_+_128644032_128644119	0.242119	ACAUUCA	NM_028248|Tmem87b|72477|transmembrane protein 87B	AK050203|Tmem87b|72477|transmembrane protein 87B	AK166991|Tmem87b|72477|transmembrane protein 87B	AK164504|Tmem87b|72477|transmembrane protein 87B	AK171811|Tmem87b|72477|transmembrane protein 87B	AK172611|Tmem87b|72477|transmembrane protein 87B	BC031488|Tmem87b|72477|transmembrane protein 87B	AK011959|Tmem87b|72477|transmembrane protein 87B
mm9_v1_chr12_+_71926429_71926675	0.241937	ACAUUCA	BC053929|Frmd6|319710|FERM domain containing 6	NM_028127|Frmd6|319710|FERM domain containing 6	AK054457|Frmd6|319710|FERM domain containing 6
mm9_v1_chr18_+_37089837_37089938	0.238769	ACAUUCA	BC082326|Pcdha1|116731|protocadherin alpha 1	AY013756|Pcdha1|116731|protocadherin alpha 1	NM_054072|Pcdha1|116731|protocadherin alpha 1
mm9_v1_chrX_-_34442878_34442893	0.236744	ACAUUCA	AK042690|Nkrf|77286|NF-kappaB repressing factor	NM_029891|Nkrf|77286|NF-kappaB repressing factor
mm9_v1_chr10_-_32609590_32609720	0.235786	ACAUUCA	BC141063|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	DQ065606|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	DQ065607|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	EF058049|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	NM_001013411|Nkain2|432450|Na+/K+ transporting ATPase interacting 2	NM_001025286|Nkain2|432450|Na+/K+ transporting ATPase interacting 2
mm9_v1_chr19_+_32832002_32832163	0.234576	ACAUUCA	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr10_+_18189773_18189786	0.228568	ACAUUCA	BC030842|Nhsl1|215819|NHS-like 1	NM_001163592|Nhsl1|215819|NHS-like 1
mm9_v1_chr1_+_82836029_82836087	0.227755	ACAUUCA	AK048326|Agfg1|15463|ArfGAP with FG repeats 1	NM_010472|Agfg1|15463|ArfGAP with FG repeats 1	AK049400|Agfg1|15463|ArfGAP with FG repeats 1	BC031154|Agfg1|15463|ArfGAP with FG repeats 1
mm9_v1_chr19_+_54019308_54019391	0.223684	ACAUUCA	NM_019658|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)	AK146447|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)
mm9_v1_chr2_-_33323966_33324113	0.22342	ACAUUCA	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chrX_+_133527693_133527841	0.223102	ACAUUCA	NM_001035509|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_001035510|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_025893|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK005317|Zcchc18|66995|zinc finger, CCHC domain containing 18	BC017627|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK134856|Zcchc18|66995|zinc finger, CCHC domain containing 18
mm9_v1_chr10_-_86168115_86168230	0.222889	ACAUUCA	BC010445|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	M16370|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	J03297|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	NM_011631|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	BC011439|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK151413|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK150811|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK153550|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160093|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK165975|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK168952|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK169090|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK159974|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chr5_-_145900957_145900965	0.221727	ACAUUCA	AK147170|Pdap1|231887|PDGFA associated protein 1	NM_001033313|Pdap1|231887|PDGFA associated protein 1
mm9_v1_chr11_+_59120429_59120467	0.221052	ACAUUCA	AK087490|Wnt9a|216795|wingless-type MMTV integration site 9A	NM_139298|Wnt9a|216795|wingless-type MMTV integration site 9A	BC066165|Wnt9a|216795|wingless-type MMTV integration site 9A	AB072311|Wnt9a|216795|wingless-type MMTV integration site 9A
mm9_v1_chr2_+_152987036_152987075	0.219537	ACAUUCA	NM_133847|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK083541|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC116320|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK035622|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr19_-_21547072_21547150	0.217413	ACAUUCA	AF174583|Gda|14544|guanine deaminase	AK044078|Gda|14544|guanine deaminase	AK173138|Gda|14544|guanine deaminase	AK041056|Gda|14544|guanine deaminase	AK079459|Gda|14544|guanine deaminase	AK157014|Gda|14544|guanine deaminase	NM_010266|Gda|14544|guanine deaminase
mm9_v1_chr5_-_23122181_23122418	0.216937	ACAUUCA	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr1_+_9538119_9538173	0.213066	ACAUUCA	NM_175236|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	AK018241|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	AK038853|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	AK050178|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1	BC026584|Adhfe1|76187|alcohol dehydrogenase, iron containing, 1
mm9_v1_chr10_+_74523633_74523640	0.212687	ACAUUCA	NM_001081412|Bcr|110279|breakpoint cluster region
mm9_v1_chr4_-_109959366_109959438	0.211825	ACAUUCA	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr19_+_54018795_54018795	0.211747	ACAUUCA	BC083060|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)	NM_001168505|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)
mm9_v1_chr13_-_41315751_41315817	0.210543	ACAUUCA	AK029855|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	BC098215|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AF170908|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	NM_019423|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK044770|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK050397|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm9_v1_chr17_+_83614611_83614641	0.206357	ACAUUCA	NM_134117|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB381893|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB436780|Pkdcc|106522|protein kinase domain containing, cytoplasmic	BC086639|Pkdcc|106522|protein kinase domain containing, cytoplasmic
mm9_v1_chr9_+_65756816_65756864	0.203185	ACAUUCA	AK090262|Csnk1g1|214897|casein kinase 1, gamma 1	NM_173185|Csnk1g1|214897|casein kinase 1, gamma 1	AK050473|Csnk1g1|214897|casein kinase 1, gamma 1	AK149310|Csnk1g1|214897|casein kinase 1, gamma 1
mm9_v1_chr11_-_23795215_23795279	0.197736	ACAUUCA	BC049163|Papolg|216578|poly(A) polymerase gamma	AK042629|Papolg|216578|poly(A) polymerase gamma	AK139065|Papolg|216578|poly(A) polymerase gamma	AK035810|Papolg|216578|poly(A) polymerase gamma	BC059271|Papolg|216578|poly(A) polymerase gamma	NM_172555|Papolg|216578|poly(A) polymerase gamma
mm9_v1_chr10_-_94877824_94877916	0.195644	ACAUUCA	U88327|Socs2|216233|suppressor of cytokine signaling 2	NM_001168657|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr11_+_59918407_59918514	0.195053	ACAUUCA	BC049785|Rai1|19377|retinoic acid induced 1	NM_009021|Rai1|19377|retinoic acid induced 1
mm9_v1_chrX_+_82819294_82819360	0.193012	ACAUUCA	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr1_+_39957733_39957796	0.190997	ACAUUCA	NM_008696|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr8_-_98012679_98012750	0.190847	ACAUUCA	AK076042|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	AJ001420|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	BC047143|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	NM_009974|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	AK002927|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide
mm9_v1_chr2_-_84490827_84490896	0.188435	ACAUUCA	BC054544|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC043108|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK161790|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK164485|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK168453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085448|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085449|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085450|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_007615|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr5_-_144493077_144493148	0.188229	ACAUUCA	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr6_-_22306070_22306242	0.182158	ACAUUCA	AY424275|Fam3c|27999|family with sequence similarity 3, member C	BC009086|Fam3c|27999|family with sequence similarity 3, member C	NM_138587|Fam3c|27999|family with sequence similarity 3, member C	BC055853|Fam3c|27999|family with sequence similarity 3, member C	AK154498|Fam3c|27999|family with sequence similarity 3, member C	AK170887|Fam3c|27999|family with sequence similarity 3, member C	BC069880|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr12_-_32398730_32398790	0.177495	ACAUUCA	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr7_+_28474358_28474458	0.1769	ACAUUCA	NM_001112731|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK140966|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK141645|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene
mm9_v1_chr3_+_28162135_28162218	0.176782	ACAUUCA	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr5_-_137548123_137548145	0.176581	ACAUUCA	BC054091|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	M33960|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	AK040662|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	NM_008871|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm9_v1_chr9_-_123022207_123022342	0.174646	ACAUUCA	BC052464|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK169197|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC018334|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK018755|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK080541|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK007355|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC005531|Zdhhc3|69035|zinc finger, DHHC domain containing 3	BC025126|Zdhhc3|69035|zinc finger, DHHC domain containing 3	AK046166|Zdhhc3|69035|zinc finger, DHHC domain containing 3	NM_026917|Zdhhc3|69035|zinc finger, DHHC domain containing 3
mm9_v1_chr14_-_73109722_73109912	0.174563	ACAUUCA	AK089380|Fndc3a|319448|fibronectin type III domain containing 3A	AK032733|Fndc3a|319448|fibronectin type III domain containing 3A	AK164398|Fndc3a|319448|fibronectin type III domain containing 3A	AK048586|Fndc3a|319448|fibronectin type III domain containing 3A	DQ192036|Fndc3a|319448|fibronectin type III domain containing 3A	NM_207636|Fndc3a|319448|fibronectin type III domain containing 3A
mm9_v1_chr15_-_66392539_66392625	0.17149	ACAUUCA	BC117823|Tmem71|213068|transmembrane protein 71	BC117824|Tmem71|213068|transmembrane protein 71	AK170268|Tmem71|213068|transmembrane protein 71	AK088711|Tmem71|213068|transmembrane protein 71	NM_172514|Tmem71|213068|transmembrane protein 71
mm9_v1_chr2_-_38920925_38921012	0.171402	ACAUUCA	BC043090|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	NM_029793|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK028516|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC024637|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC053068|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK002954|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK008972|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK044987|Golga1|76899|golgi autoantigen, golgin subfamily a, 1
mm9_v1_chr7_-_151924382_151924447	0.170224	ACAUUCA	BC062959|Ano1|101772|anoctamin 1, calcium activated chloride channel	NM_178642|Ano1|101772|anoctamin 1, calcium activated chloride channel	AK052589|Ano1|101772|anoctamin 1, calcium activated chloride channel
mm9_v1_chr2_-_125684720_125684819	0.169819	ACAUUCA	AF071312|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	BC023096|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AF087688|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK145225|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK146153|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK132207|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK084421|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK010383|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK037757|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK132776|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	NM_009939|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm9_v1_chr14_-_71166340_71166465	0.168616	ACAUUCA	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr2_-_103637096_103637239	0.16575	ACAUUCA	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr6_-_13627853_13628000	0.165266	ACAUUCA	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr1_-_30920095_30920100	0.163823	ACAUUCA	BC011226|Phf3|213109|PHD finger protein 3	BC032205|Phf3|213109|PHD finger protein 3	BC137913|Phf3|213109|PHD finger protein 3	NM_001081080|Phf3|213109|PHD finger protein 3
mm9_v1_chr9_+_44187572_44187715	0.162554	ACAUUCA	NM_021395|Hyou1|12282|hypoxia up-regulated 1	AK128937|Hyou1|12282|hypoxia up-regulated 1	AK155721|Hyou1|12282|hypoxia up-regulated 1	AK145857|Hyou1|12282|hypoxia up-regulated 1	AK171769|Hyou1|12282|hypoxia up-regulated 1	BC058255|Hyou1|12282|hypoxia up-regulated 1	AK157949|Hyou1|12282|hypoxia up-regulated 1	BC019785|Hyou1|12282|hypoxia up-regulated 1	BC050107|Hyou1|12282|hypoxia up-regulated 1
mm9_v1_chr17_-_21982590_21982733	0.16159	ACAUUCA	AK148228|Zfp820|75424|zinc finger protein 820	AK011694|Zfp820|75424|zinc finger protein 820	NM_029281|Zfp820|75424|zinc finger protein 820	BC019219|Zfp820|75424|zinc finger protein 820
mm9_v1_chr2_+_132088974_132089064	0.161208	ACAUUCA	AK050589|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	BC003852|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK147541|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	NM_138651|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK170888|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK036328|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK166001|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm9_v1_chr15_-_103045710_103045798	0.159996	ACAUUCA	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr2_-_131855722_131855755	0.159898	ACAUUCA	NM_175445|Rassf2|215653|Ras association (RalGDS/AF-6) domain family member 2
mm9_v1_chr10_-_75807976_75808035	0.15988	ACAUUCA	AK052899|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	NM_001081419|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	AK050040|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm9_v1_chr1_-_58642994_58643176	0.158381	ACAUUCA	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr19_+_53977788_53977896	0.157031	ACAUUCA	NM_001168491|Pdcd4|18569|programmed cell death 4	NM_001168492|Pdcd4|18569|programmed cell death 4	AK172654|Pdcd4|18569|programmed cell death 4
mm9_v1_chr13_+_67880629_67880739	0.152337	ACAUUCA	NM_028402|Zfp493|72958|zinc finger protein 493	AK013687|Zfp493|72958|zinc finger protein 493	AK140336|Zfp493|72958|zinc finger protein 493
mm9_v1_chr8_+_112302530_112302620	0.151791	ACAUUCA	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr4_-_148681792_148681843	0.149599	ACAUUCA	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
mm9_v1_chr16_+_38742365_38742408	0.149499	ACAUUCA	AK050005|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	NM_019804|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK052013|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK053603|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK085368|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	BC031115|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AF142672|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AF158746|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK045602|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK018658|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	BC013492|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm9_v1_chr2_+_126533042_126533178	0.148441	ACAUUCA	AK166540|Usp8|84092|ubiquitin specific peptidase 8	BC038123|Usp8|84092|ubiquitin specific peptidase 8	AK129003|Usp8|84092|ubiquitin specific peptidase 8	BC050947|Usp8|84092|ubiquitin specific peptidase 8	BC061465|Usp8|84092|ubiquitin specific peptidase 8	NM_019729|Usp8|84092|ubiquitin specific peptidase 8	BC066126|Usp8|84092|ubiquitin specific peptidase 8	AK134058|Usp8|84092|ubiquitin specific peptidase 8	AK040791|Usp8|84092|ubiquitin specific peptidase 8	AK163469|Usp8|84092|ubiquitin specific peptidase 8	AK122195|Usp8|84092|ubiquitin specific peptidase 8	AK153015|Usp8|84092|ubiquitin specific peptidase 8
mm9_v1_chr14_+_121310342_121310481	0.146938	ACAUUCA	AK161668|Ipo5|70572|importin 5	NM_023579|Ipo5|70572|importin 5	AK079134|Ipo5|70572|importin 5	AK049422|Ipo5|70572|importin 5	AK169664|Ipo5|70572|importin 5	AK053681|Ipo5|70572|importin 5	AK017701|Ipo5|70572|importin 5	AK167303|Ipo5|70572|importin 5	AF294327|Ipo5|70572|importin 5	BC052392|Ipo5|70572|importin 5
mm9_v1_chr11_+_105451296_105451348	0.145797	ACAUUCA	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr1_+_154802198_154802230	0.145319	ACAUUCA	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr1_-_135557934_135557977	0.14488	ACAUUCA	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr11_-_87800799_87801034	0.144496	ACAUUCA	AK028319|Dynll2|68097|dynein light chain LC8-type 2	BC011289|Dynll2|68097|dynein light chain LC8-type 2	BC058797|Dynll2|68097|dynein light chain LC8-type 2	BC040822|Dynll2|68097|dynein light chain LC8-type 2	AK011284|Dynll2|68097|dynein light chain LC8-type 2	AK160114|Dynll2|68097|dynein light chain LC8-type 2	AK049645|Dynll2|68097|dynein light chain LC8-type 2	AK078434|Dynll2|68097|dynein light chain LC8-type 2	AK169212|Dynll2|68097|dynein light chain LC8-type 2	NM_026556|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr5_-_141124884_141125029	0.144421	ACAUUCA	AK052340|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC059083|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC062917|Ttyh3|78339|tweety homolog 3 (Drosophila)	NM_175274|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr1_-_93355893_93355916	0.140032	ACAUUCA	AK159847|Per2|18627|period homolog 2 (Drosophila)	AK165556|Per2|18627|period homolog 2 (Drosophila)	NM_011066|Per2|18627|period homolog 2 (Drosophila)
mm9_v1_chr2_-_34610751_34610751	0.139667	ACAUUCA	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr7_+_30954893_30954940	0.138681	ACAUUCA	AK046598|Gm5113|330503|predicted gene 5113	AK147880|Gm5113|330503|predicted gene 5113	NM_001033540|Gm5113|330503|predicted gene 5113
mm9_v1_chr13_-_9764376_9764487	0.137461	ACAUUCA	BC022945|Zmynd11|66505|zinc finger, MYND domain containing 11	AK077732|Zmynd11|66505|zinc finger, MYND domain containing 11	NM_144516|Zmynd11|66505|zinc finger, MYND domain containing 11
mm9_v1_chr17_+_50648736_50648932	0.137207	ACAUUCA	AB033615|Plcl2|224860|phospholipase C-like 2	NM_013880|Plcl2|224860|phospholipase C-like 2	AK165548|Plcl2|224860|phospholipase C-like 2	AK154288|Plcl2|224860|phospholipase C-like 2
mm9_v1_chr14_+_69647294_69647485	0.135077	ACAUUCA	AF099098|Stc1|20855|stanniocalcin 1	BC021425|Stc1|20855|stanniocalcin 1	AK134260|Stc1|20855|stanniocalcin 1	NM_009285|Stc1|20855|stanniocalcin 1	AK142220|Stc1|20855|stanniocalcin 1	AK149293|Stc1|20855|stanniocalcin 1	AK149351|Stc1|20855|stanniocalcin 1	AK161960|Stc1|20855|stanniocalcin 1
mm9_v1_chr10_-_94879435_94879509	0.13373	ACAUUCA	AK160537|Socs2|216233|suppressor of cytokine signaling 2	AK162591|Socs2|216233|suppressor of cytokine signaling 2	BC106153|Socs2|216233|suppressor of cytokine signaling 2	NM_007706|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr1_+_120285634_120285634	0.132995	ACAUUCA	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr12_-_85559793_85559836	0.131386	ACAUUCA	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr13_+_62231249_62231259	0.129522	ACAUUCA	BC061203|Zfp808|630579|zinc finger protein 80	NM_001039239|Zfp808|630579|zinc finger protein 80	AK013043|2810408B13Rik|76371|RIKEN cDNA 2810408B13 gene
mm9_v1_chr10_-_94878117_94878117	0.126113	ACAUUCA	NM_001168656|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chrX_+_96133099_96133119	0.124372	ACAUUCA	AK030473|Yipf6|77929|Yip1 domain family, member 6	AK053562|Yipf6|77929|Yip1 domain family, member 6	NM_207633|Yipf6|77929|Yip1 domain family, member 6
mm9_v1_chr9_+_111174321_111174442	0.123222	ACAUUCA	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr7_-_49948087_49948135	0.119355	ACAUUCA	BC068175|Gm5595|434179|predicted gene 5595	NM_001008427|Gm5595|434179|predicted gene 5595
mm9_v1_chr7_+_119902897_119902956	0.117567	ACAUUCA	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chrX_+_34666757_34666828	0.116223	ACAUUCA	NM_025937|Nkap|67050|NFKB activating protein	BC026774|Nkap|67050|NFKB activating protein	AK011492|Nkap|67050|NFKB activating protein	AY388959|Nkap|67050|NFKB activating protein	AK038344|Nkap|67050|NFKB activating protein	AK076125|Nkap|67050|NFKB activating protein	AK012826|Nkap|67050|NFKB activating protein	AK089943|Nkap|67050|NFKB activating protein
mm9_v1_chr16_+_16983461_16983497	0.116211	ACAUUCA	AK048127|Mapk1|26413|mitogen-activated protein kinase 1	NM_001038663|Mapk1|26413|mitogen-activated protein kinase 1	NM_011949|Mapk1|26413|mitogen-activated protein kinase 1	AK132241|Mapk1|26413|mitogen-activated protein kinase 1	AK148853|Mapk1|26413|mitogen-activated protein kinase 1	AK087925|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr11_+_50191220_50191290	0.11618	ACAUUCA	NM_021510|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC016459|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK052983|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK088169|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	Y14196|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC042187|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC056224|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1
mm9_v1_chr2_+_145611851_145611951	0.114334	ACAUUCA	NM_028724|Rin2|74030|Ras and Rab interactor 2	BC040390|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr18_+_42435006_42435038	0.110185	ACAUUCA	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr4_-_6381414_6381433	0.109683	ACAUUCA	AK164305|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	AK172560|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	NM_010945|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor
mm9_v1_chr1_-_165333739_165333824	0.1093	ACAUUCA	AK165909|Gorab|98376|golgin, RAB6-interacting	BC119132|Gorab|98376|golgin, RAB6-interacting	BC119134|Gorab|98376|golgin, RAB6-interacting	AK169151|Gorab|98376|golgin, RAB6-interacting	AK043953|Gorab|98376|golgin, RAB6-interacting	NM_178883|Gorab|98376|golgin, RAB6-interacting	AK039170|Gorab|98376|golgin, RAB6-interacting	AK170455|Gorab|98376|golgin, RAB6-interacting
mm9_v1_chr15_+_12134833_12134872	0.10926	ACAUUCA	AK076161|Mtmr12|268783|myotubularin related protein 12	BC054352|Mtmr12|268783|myotubularin related protein 12	NM_172958|Mtmr12|268783|myotubularin related protein 12	AK050099|Mtmr12|268783|myotubularin related protein 12	AK050236|Mtmr12|268783|myotubularin related protein 12	BC042573|Mtmr12|268783|myotubularin related protein 12
mm9_v1_chr3_-_88576415_88576522	0.106417	ACAUUCA	AK158745|Syt11|229521|synaptotagmin XI	AK144169|Syt11|229521|synaptotagmin XI	AK164082|Syt11|229521|synaptotagmin XI	BC054526|Syt11|229521|synaptotagmin XI	AK164368|Syt11|229521|synaptotagmin XI	NM_018804|Syt11|229521|synaptotagmin XI
mm9_v1_chr17_-_88464582_88464624	0.106104	ACAUUCA	BC117884|Fbxo11|225055|F-box protein 11	BC117885|Fbxo11|225055|F-box protein 11	BC128479|Fbxo11|225055|F-box protein 11	NM_001081034|Fbxo11|225055|F-box protein 11
mm9_v1_chr11_-_20641455_20641486	0.105296	ACAUUCA	AK029681|Aftph|216549|aftiphilin	AK138793|Aftph|216549|aftiphilin	BC052036|Aftph|216549|aftiphilin	NM_181411|Aftph|216549|aftiphilin
mm9_v1_chrX_+_53599573_53599586	0.103458	ACAUUCA	AK142888|Zfp449|78619|zinc finger protein 449	AK036596|Zfp449|78619|zinc finger protein 449	NM_030139|Zfp449|78619|zinc finger protein 449	AK020600|Zfp449|78619|zinc finger protein 449
mm9_v1_chr2_-_105744649_105744720	0.102649	ACAUUCA	AJ276004|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK039758|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	NM_023876|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK034040|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK020742|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK034529|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK039447|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK079069|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK037104|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)	AK168964|Elp4|77766|elongation protein 4 homolog (S. cerevisiae)
mm9_v1_chr8_+_12757011_12757296	0.10153	ACAUUCA	AK147497|Atp11a|50770|ATPase, class VI, type 11A	NM_015804|Atp11a|50770|ATPase, class VI, type 11A	AF156551|Atp11a|50770|ATPase, class VI, type 11A	BC145399|Atp11a|50770|ATPase, class VI, type 11A	BC145400|Atp11a|50770|ATPase, class VI, type 11A	BC138715|Atp11a|50770|ATPase, class VI, type 11A
mm9_v1_chr8_+_93352723_93352742	0.101262	ACAUUCA	AK034446|Chd9|109151|chromodomain helicase DNA binding protein 9	NM_177224|Chd9|109151|chromodomain helicase DNA binding protein 9	AK039562|Chd9|109151|chromodomain helicase DNA binding protein 9	DQ127229|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr3_-_19062922_19063101	0.100633	ACAUUCA	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chr5_+_145992583_145992654	0.100342	ACAUUCA	AK161949|Zfp655|72611|zinc finger protein 655	NM_001083958|Zfp655|72611|zinc finger protein 655	BC060660|Zfp655|72611|zinc finger protein 655	AK018500|Zfp655|72611|zinc finger protein 655	BC061032|Zfp655|72611|zinc finger protein 655	AK220552|Zfp655|72611|zinc finger protein 655	BC062945|Zfp655|72611|zinc finger protein 655	NM_028298|Zfp655|72611|zinc finger protein 655	AK012336|Zfp655|72611|zinc finger protein 655	BC019153|Zfp655|72611|zinc finger protein 655	BC034731|Zfp655|72611|zinc finger protein 655
mm9_v1_chr19_+_10763197_10763304	0.100121	ACAUUCA	AK158833|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK159309|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK165826|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK150606|Vps37c|107305|vacuolar protein sorting 37C (yeast)	BC025865|Vps37c|107305|vacuolar protein sorting 37C (yeast)	NM_181403|Vps37c|107305|vacuolar protein sorting 37C (yeast)
mm9_v1_chr4_-_131767968_131768170	0.0999131	ACAUUCA	AK083882|Ythdf2|213541|YTH domain family 2	BC028994|Ythdf2|213541|YTH domain family 2	BC014797|Ythdf2|213541|YTH domain family 2	AK150350|Ythdf2|213541|YTH domain family 2	AK150669|Ythdf2|213541|YTH domain family 2	AK151392|Ythdf2|213541|YTH domain family 2	AK151862|Ythdf2|213541|YTH domain family 2	AK159548|Ythdf2|213541|YTH domain family 2	AK031616|Ythdf2|213541|YTH domain family 2	AK144209|Ythdf2|213541|YTH domain family 2	AK034655|Ythdf2|213541|YTH domain family 2	NM_145393|Ythdf2|213541|YTH domain family 2
mm9_v1_chr16_+_44347501_44347594	0.0994962	ACAUUCA	NM_144550|Spice1|212514|spindle and centriole associated protein 1	AK165031|Spice1|212514|spindle and centriole associated protein 1	BC052381|Spice1|212514|spindle and centriole associated protein 1	BC056960|Spice1|212514|spindle and centriole associated protein 1	AK048789|Spice1|212514|spindle and centriole associated protein 1
mm9_v1_chr13_-_96661704_96661910	0.0941791	ACAUUCA	BC094939|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC052916|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK080384|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK147360|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC150958|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK142813|Iqgap2|544963|IQ motif containing GTPase activating protein 2	NM_027711|Iqgap2|544963|IQ motif containing GTPase activating protein 2
mm9_v1_chr3_-_27609279_27609407	0.0906731	ACAUUCA	AB098596|Fndc3b|72007|fibronectin type III domain containing 3B	AK147346|Fndc3b|72007|fibronectin type III domain containing 3B	AK220297|Fndc3b|72007|fibronectin type III domain containing 3B	NM_173182|Fndc3b|72007|fibronectin type III domain containing 3B	BC067389|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr15_+_35301285_35301305	0.0906682	ACAUUCA	AK053274|Vps13b|666173|vacuolar protein sorting 13B (yeast)	NM_177151|Vps13b|666173|vacuolar protein sorting 13B (yeast)	AK049111|Vps13b|666173|vacuolar protein sorting 13B (yeast)
mm9_v1_chr9_-_58884114_58884258	0.0888009	ACAUUCA	Y09535|Neo1|18007|neogenin	BC054540|Neo1|18007|neogenin	AK084609|Neo1|18007|neogenin	NM_001042752|Neo1|18007|neogenin	NM_008684|Neo1|18007|neogenin
mm9_v1_chr9_+_21172314_21172446	0.0879609	ACAUUCA	AK150276|Ilf3|16201|interleukin enhancer binding factor 3	AK128936|Ilf3|16201|interleukin enhancer binding factor 3	AK048096|Ilf3|16201|interleukin enhancer binding factor 3	AK077560|Ilf3|16201|interleukin enhancer binding factor 3	BC047272|Ilf3|16201|interleukin enhancer binding factor 3	AF497751|Ilf3|16201|interleukin enhancer binding factor 3	AF497752|Ilf3|16201|interleukin enhancer binding factor 3	DQ104405|Ilf3|16201|interleukin enhancer binding factor 3	DQ104406|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042707|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042708|Ilf3|16201|interleukin enhancer binding factor 3	NM_001042709|Ilf3|16201|interleukin enhancer binding factor 3	NM_010561|Ilf3|16201|interleukin enhancer binding factor 3
mm9_v1_chr19_+_47806216_47806291	0.0869112	ACAUUCA	AK011531|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	NM_026377|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK078147|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK004073|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK146810|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	BC024403|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AB597963|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK016079|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK014266|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK077875|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK168427|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK167406|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK168068|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene	AK217479|6330577E15Rik|67788|RIKEN cDNA 6330577E15 gene
mm9_v1_chr11_-_88579517_88579542	0.0860338	ACAUUCA	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr5_+_76612903_76613006	0.0856215	ACAUUCA	NM_011626|Tmem165|21982|transmembrane protein 165	BC037638|Tmem165|21982|transmembrane protein 165	AK004829|Tmem165|21982|transmembrane protein 165	M23568|Tmem165|21982|transmembrane protein 165
mm9_v1_chr14_-_47441795_47441916	0.0838346	ACAUUCA	AB001732|Gmfb|63985|glia maturation factor, beta	BC040233|Gmfb|63985|glia maturation factor, beta	AB050013|Gmfb|63985|glia maturation factor, beta	BC049134|Gmfb|63985|glia maturation factor, beta	AK013970|Gmfb|63985|glia maturation factor, beta	AK013947|Gmfb|63985|glia maturation factor, beta	AF297220|Gmfb|63985|glia maturation factor, beta	AK142014|Gmfb|63985|glia maturation factor, beta	NM_022023|Gmfb|63985|glia maturation factor, beta
mm9_v1_chr8_+_128822478_128822500	0.0811667	ACAUUCA	NM_175434|Slc35f3|210027|solute carrier family 35, member F3	AK046359|Slc35f3|210027|solute carrier family 35, member F3
mm9_v1_chrX_-_50723622_50723678	0.0801492	ACAUUCA	BC100442|Mospd1|70380|motile sperm domain containing 1	BC018329|Mospd1|70380|motile sperm domain containing 1	BC085100|Mospd1|70380|motile sperm domain containing 1	AK007533|Mospd1|70380|motile sperm domain containing 1	NM_027409|Mospd1|70380|motile sperm domain containing 1	AK088275|Mospd1|70380|motile sperm domain containing 1	AK139795|Mospd1|70380|motile sperm domain containing 1
mm9_v1_chr11_+_20443168_20443285	0.0791955	ACAUUCA	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr4_+_21774729_21774865	0.0785868	ACAUUCA	NM_025669|Sfrs18|66625|serine/arginine-rich splicing factor 18	BC141031|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr12_+_33638809_33638809	0.0766723	ACAUUCA	BC060971|Sypl|19027|synaptophysin-like protein	NM_013635|Sypl|19027|synaptophysin-like protein
mm9_v1_chr17_+_85357297_85357373	0.0765117	ACAUUCA	AK050170|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	AK136077|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	NM_001159496|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	NM_011151|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	AK160653|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	AK167176|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	AK163283|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	AJ271836|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform	AJ271833|Ppm1b|19043|protein phosphatase 1B, magnesium dependent, beta isoform
mm9_v1_chr5_-_147606370_147606581	0.0763814	ACAUUCA	AK035629|Usp12|22217|ubiquitin specific peptidase 12	AK167153|Usp12|22217|ubiquitin specific peptidase 12	BC068136|Usp12|22217|ubiquitin specific peptidase 12	NM_011669|Usp12|22217|ubiquitin specific peptidase 12	AK006739|Usp12|22217|ubiquitin specific peptidase 12
mm9_v1_chr2_-_104656852_104656885	0.074483	ACAUUCA	NM_001123327|Qser1|99003|glutamine and serine rich 1
mm9_v1_chr4_+_43888373_43888471	0.074119	ACAUUCA	BC132197|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC138065|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC145133|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK042266|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	NM_016678|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK157885|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK143657|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC053025|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AB006960|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs
mm9_v1_chr18_-_67712374_67712430	0.074071	ACAUUCA	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr12_+_83271002_83271165	0.0726282	ACAUUCA	NM_001167983|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC058681|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK171876|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr1_+_57434454_57434500	0.0725358	ACAUUCA	NM_028546|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr10_-_62255007_62255115	0.0723791	ACAUUCA	BC034174|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC051052|Ccar1|67500|cell division cycle and apoptosis regulator 1	NM_026201|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr10_-_94878845_94878845	0.0705142	ACAUUCA	NM_001168655|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr15_+_82105322_82105458	0.069742	ACAUUCA	AF104411|Sept3|24050|septin 3	NM_011889|Sept3|24050|septin 3	BC055738|Sept3|24050|septin 3
mm9_v1_chr8_+_24085309_24085353	0.0679257	ACAUUCA	AK158131|Ank1|11733|ankyrin 1, erythroid	AK147278|Ank1|11733|ankyrin 1, erythroid	NM_001110783|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr6_-_53018566_53018625	0.0665244	ACAUUCA	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr5_+_28492235_28492251	0.066471	ACAUUCA	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr1_-_54983211_54983245	0.0649172	ACAUUCA	AK038343|Ankrd44|329154|ankyrin repeat domain 44	NM_001081433|Ankrd44|329154|ankyrin repeat domain 44
mm9_v1_chr12_+_33063653_33063723	0.0643077	ACAUUCA	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr11_-_106993235_106993235	0.0635205	ACAUUCA	NM_176850|Bptf|207165|bromodomain PHD finger transcription factor
mm9_v1_chr15_+_25914120_25914196	0.0611998	ACAUUCA	AK031232|Zfp622|52521|zinc finger protein 622	AK170489|Zfp622|52521|zinc finger protein 622	NM_144523|Zfp622|52521|zinc finger protein 622	AK149106|Zfp622|52521|zinc finger protein 622	AK154951|Zfp622|52521|zinc finger protein 622
mm9_v1_chr6_-_30254273_30254567	0.0607213	ACAUUCA	U19854|Ube2h|22214|ubiquitin-conjugating enzyme E2H	BC008517|Ube2h|22214|ubiquitin-conjugating enzyme E2H	AK131688|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001170345|Gm2058|100039133|predicted gene 2058	AK161414|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001169576|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_009459|Ube2h|22214|ubiquitin-conjugating enzyme E2H
mm9_v1_chr8_+_59799779_59799785	0.0559239	ACAUUCA	AK035160|Hand2|15111|heart and neural crest derivatives expressed transcript 2	NM_010402|Hand2|15111|heart and neural crest derivatives expressed transcript 2
mm9_v1_chr14_-_52533114_52533162	0.0556578	ACAUUCA	NM_001145959|Ndrg2|29811|N-myc downstream regulated gene 2	NM_013864|Ndrg2|29811|N-myc downstream regulated gene 2
mm9_v1_chr7_+_146132386_146132432	0.0534459	ACAUUCA	AK018189|Jakmip3|74004|janus kinase and microtubule interacting protein 3	AK220482|Jakmip3|74004|janus kinase and microtubule interacting protein 3	NM_028708|Jakmip3|74004|janus kinase and microtubule interacting protein 3
mm9_v1_chr13_+_81022644_81022695	0.0529706	ACAUUCA	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr3_+_152009436_152009469	0.0509072	ACAUUCA	AK087467|Usp33|170822|ubiquitin specific peptidase 33	NM_001076676|Usp33|170822|ubiquitin specific peptidase 33	NM_133247|Usp33|170822|ubiquitin specific peptidase 33	AF383174|Usp33|170822|ubiquitin specific peptidase 33	AK082251|Usp33|170822|ubiquitin specific peptidase 33	AK082943|Usp33|170822|ubiquitin specific peptidase 33
mm9_v1_chr7_-_116895708_116895795	0.0508231	ACAUUCA	AK009147|Tmem9b|56786|TMEM9 domain family, member B	AK077253|Tmem9b|56786|TMEM9 domain family, member B	AK007430|Tmem9b|56786|TMEM9 domain family, member B	BC002208|Tmem9b|56786|TMEM9 domain family, member B	NM_020050|Tmem9b|56786|TMEM9 domain family, member B	AK147127|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chr3_+_108374611_108374644	0.0503693	ACAUUCA	AK007227|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK007339|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_025444|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK076595|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK160171|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC021447|Taf13|99730|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr17_-_46693110_46693149	0.0502727	ACAUUCA	NM_020493|Srf|20807|serum response factor	BC051950|Srf|20807|serum response factor
mm9_v1_chr17_+_6106829_6106853	0.0498179	ACAUUCA	NM_001103181|Tulp4|68842|tubby like protein 4
mm9_v1_chr10_+_69559860_69560052	0.0496096	ACAUUCA	NM_001111121|Ccdc6|76551|coiled-coil domain containing 6
mm9_v1_chr6_-_122692754_122692762	0.0479266	ACAUUCA	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr4_+_109349189_109349242	0.0454472	ACAUUCA	BC065098|Faf1|14084|Fas-associated factor 1	NM_007983|Faf1|14084|Fas-associated factor 1
mm9_v1_chr15_+_102236709_102236810	0.0450263	ACAUUCA	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr7_-_28459566_28459642	0.0427435	ACAUUCA	AK053830|Map3k10|269881|mitogen-activated protein kinase kinase kinase 10	NM_001081292|Map3k10|269881|mitogen-activated protein kinase kinase kinase 10
mm9_v1_chr2_-_33286793_33286890	0.0422155	ACAUUCA	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr16_-_85901362_85901374	0.0417603	ACAUUCA	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr3_-_19935292_19935325	0.041076	ACAUUCA	AK157953|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK149359|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK166194|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK155497|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK171997|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK086167|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AF393747|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK079896|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AF393780|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK049204|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	NM_001146323|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	NM_001146324|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	NM_080634|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)	AK036663|Hps3|12807|Hermansky-Pudlak syndrome 3 homolog (human)
mm9_v1_chr12_+_27154043_27154079	0.0406951	ACAUUCA	BC048910|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	NM_020557|Cmpk2|22169|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
mm9_v1_chr8_-_37676995_37677010	0.0399688	ACAUUCA	AK162413|Dlc1|50768|deleted in liver cancer 1	NM_015802|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr18_+_58996320_58996417	0.0399509	ACAUUCA	BC150736|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	AY135183|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	NM_175506|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm9_v1_chr1_-_25886551_25886551	0.0399217	ACAUUCA	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr5_+_65522325_65522469	0.0349599	ACAUUCA	BC057606|Klhl5|71778|kelch-like 5 (Drosophila)	NM_175174|Klhl5|71778|kelch-like 5 (Drosophila)
mm9_v1_chr3_+_19088109_19088272	0.0326623	ACAUUCA	DQ369744|Mtfr1|67472|mitochondrial fission regulator 1	AK075992|Mtfr1|67472|mitochondrial fission regulator 1	AK018048|Mtfr1|67472|mitochondrial fission regulator 1	AK004846|Mtfr1|67472|mitochondrial fission regulator 1	NM_026182|Mtfr1|67472|mitochondrial fission regulator 1	AK075822|Mtfr1|67472|mitochondrial fission regulator 1	AK009195|Mtfr1|67472|mitochondrial fission regulator 1	AK134822|Mtfr1|67472|mitochondrial fission regulator 1	BC019971|Mtfr1|67472|mitochondrial fission regulator 1
mm9_v1_chr13_-_101556356_101556493	0.0323706	ACAUUCA	FJ931532|Ccnb1|268697|cyclin B1	AK143597|Ccnb1|268697|cyclin B1	BC080202|Ccnb1|268697|cyclin B1	X64713|Ccnb1|268697|cyclin B1	BC085238|Ccnb1|268697|cyclin B1	BC011478|Ccnb1|268697|cyclin B1	NM_172301|Ccnb1|268697|cyclin B1	X58708|Ccnb1|268697|cyclin B1	AK163259|Ccnb1|268697|cyclin B1	AK168993|Ccnb1|268697|cyclin B1	AK136259|Ccnb1|268697|cyclin B1	AK166686|Ccnb1|268697|cyclin B1	AK167950|Ccnb1|268697|cyclin B1	AK168441|Ccnb1|268697|cyclin B1	AK168502|Ccnb1|268697|cyclin B1	S43105|Ccnb1|268697|cyclin B1
mm9_v1_chr15_-_57723937_57723989	0.032164	ACAUUCA	AK152901|Derl1|67819|Der1-like domain family, member 1	AK148018|Derl1|67819|Der1-like domain family, member 1	AK152197|Derl1|67819|Der1-like domain family, member 1	AK043420|Derl1|67819|Der1-like domain family, member 1	NM_024207|Derl1|67819|Der1-like domain family, member 1	AK007435|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr9_+_98197001_98197080	0.0315389	ACAUUCA	BC005737|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	NM_144533|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK040783|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041526|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041897|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3
mm9_v1_chr9_+_111214242_111214242	0.0303602	ACAUUCA	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr4_+_125168074_125168079	0.0298784	ACAUUCA	NM_001081097|Grik3|14807|glutamate receptor, ionotropic, kainate 3	BC118004|Grik3|14807|glutamate receptor, ionotropic, kainate 3
mm9_v1_chr5_+_93112460_93112460	0.0296656	ACAUUCA	AF199421|Shroom3|27428|shroom family member 3	NM_015756|Shroom3|27428|shroom family member 3
mm9_v1_chr16_+_58408609_58408667	0.0282047	ACAUUCA	BC066097|Dcbld2|73379|discoidin, CUB and LCCL domain containing 2	NM_028523|Dcbld2|73379|discoidin, CUB and LCCL domain containing 2
mm9_v1_chrX_-_101176600_101176631	0.0267491	ACAUUCA	AK013207|Rlim|19820|ring finger protein, LIM domain interacting	AK029295|Rlim|19820|ring finger protein, LIM domain interacting	AK163276|Rlim|19820|ring finger protein, LIM domain interacting	NM_011276|Rlim|19820|ring finger protein, LIM domain interacting
mm9_v1_chr2_+_163428044_163428072	0.026536	ACAUUCA	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr5_+_144578646_144578690	0.0244792	ACAUUCA	NM_013557|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	AY033898|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	AK155206|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	BC028923|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1
mm9_v1_chr3_+_53267715_53267853	0.0185965	ACAUUCA	AK087909|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK038404|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	NM_173382|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK012908|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene	AK161440|2810046L04Rik|212127|RIKEN cDNA 2810046L04 gene
mm9_v1_chr3_-_142544883_142544984	0.0185474	ACAUUCA	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr5_+_87233514_87233581	0.0169371	ACAUUCA	NM_177680|Ythdc1|231386|YTH domain containing 1
mm9_v1_chr11_-_97049185_97049278	0.0168012	ACAUUCA	BC055115|Kpnb1|16211|karyopherin (importin) beta 1	AK077709|Kpnb1|16211|karyopherin (importin) beta 1	NM_008379|Kpnb1|16211|karyopherin (importin) beta 1	AK147175|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr17_-_36408313_36408377	0.0137328	ACAUUCA	AK220298|Trim39|79263|tripartite motif-containing 39	AK145861|Trim39|79263|tripartite motif-containing 39	AK053507|Trim39|79263|tripartite motif-containing 39	NM_178281|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr7_+_52151432_52151509	0.0116068	ACAUUCA	NM_027376|Fuz|70300|fuzzy homolog (Drosophila)	AK134650|Fuz|70300|fuzzy homolog (Drosophila)	AK168939|Fuz|70300|fuzzy homolog (Drosophila)	AK045745|Fuz|70300|fuzzy homolog (Drosophila)	AK033247|Fuz|70300|fuzzy homolog (Drosophila)	BC045601|Fuz|70300|fuzzy homolog (Drosophila)	AK011195|Fuz|70300|fuzzy homolog (Drosophila)
mm9_v1_chr17_+_34742803_34742908	0.011353	ACAUUCA	NM_001163379|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	AB005623|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	AK086281|Agpat1|55979|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm9_v1_chr11_-_70832737_70832807	0.0109119	ACAUUCA	AF208064|Derl2|116891|Der1-like domain family, member 2	AK083632|Derl2|116891|Der1-like domain family, member 2	BC005682|Derl2|116891|Der1-like domain family, member 2	AK083725|Derl2|116891|Der1-like domain family, member 2	AK048627|Derl2|116891|Der1-like domain family, member 2	AK077659|Derl2|116891|Der1-like domain family, member 2	AK082564|Derl2|116891|Der1-like domain family, member 2	NM_033562|Derl2|116891|Der1-like domain family, member 2	AK090105|Derl2|116891|Der1-like domain family, member 2
mm9_v1_chr4_+_34497840_34497946	0.0108656	ACAUUCA	NM_001007589|Akirin2|433693|akirin 2	BC082305|Akirin2|433693|akirin 2
mm9_v1_chr9_-_108551631_108551731	0.00942622	ACAUUCA	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr6_+_145756902_145756931	0.00554795	ACAUUCA	AF424737|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	NM_027760|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	BC115779|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	BC117546|Rassf8|71323|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
mm9_v1_chr2_+_125684938_125684961	0.00492725	ACAUUCA	AK082521|Galk2|69976|galactokinase 2	NM_175154|Galk2|69976|galactokinase 2
mm9_v1_chr15_-_37721754_37721786	0.00311854	ACAUUCA	NM_001170866|Ncald|52589|neurocalcin delta
mm9_v1_chr7_+_28459677_28459679	0.00235549	ACAUUCA	BC060708|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	NM_198417|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene
mm9_v1_chr6_-_49164952_49164952	0.00220238	ACAUUCA	AK147140|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	NM_023670|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3
mm9_v1_chr5_-_135870365_135870452	0.00173292	ACAUUCA	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr10_-_120416369_120416397	0.00119587	ACAUUCA	AF112300|Lemd3|380664|LEM domain containing 3	NM_001081193|Lemd3|380664|LEM domain containing 3
