mm9_v1_chr1_-_72921438_72921462	0.791104	ACUGGCC	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr5_+_75971011_75971052	0.763376	ACUGGCC	NM_001122733|Kit|16590|kit oncogene	NM_021099|Kit|16590|kit oncogene	AK046795|Kit|16590|kit oncogene	AK047010|Kit|16590|kit oncogene	BC026713|Kit|16590|kit oncogene	BC075716|Kit|16590|kit oncogene	BC052457|Kit|16590|kit oncogene	Y00864|Kit|16590|kit oncogene	AY536430|Kit|16590|kit oncogene	AY536431|Kit|16590|kit oncogene
mm9_v1_chr4_+_15808409_15808487	0.716697	ACUGGCC	AK002635|Calb1|12307|calbindin 1	AK005081|Calb1|12307|calbindin 1	AK005243|Calb1|12307|calbindin 1	AK028050|Calb1|12307|calbindin 1	AK038856|Calb1|12307|calbindin 1	AK048517|Calb1|12307|calbindin 1	AK077499|Calb1|12307|calbindin 1	NM_009788|Calb1|12307|calbindin 1	AK028327|Calb1|12307|calbindin 1	AK078358|Calb1|12307|calbindin 1	M21531|Calb1|12307|calbindin 1	BC016421|Calb1|12307|calbindin 1
mm9_v1_chr1_-_188529867_188529872	0.574838	ACUGGCC	X57413|Tgfb2|21808|transforming growth factor, beta 2	NM_009367|Tgfb2|21808|transforming growth factor, beta 2
mm9_v1_chr4_+_13670425_13670448	0.407123	ACUGGCC	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr12_+_101437735_101437896	0.40121	ACUGGCC	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr4_+_13678443_13678575	0.368318	ACUGGCC	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr1_+_189821727_189821874	0.358994	ACUGGCC	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr9_+_106073255_106073259	0.340011	ACUGGCC	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr2_-_134469806_134469920	0.328145	ACUGGCC	BC138168|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC138169|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK040779|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK147465|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK129301|Tmx4|52837|thioredoxin-related transmembrane protein 4	BC054558|Tmx4|52837|thioredoxin-related transmembrane protein 4	NM_029148|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK015667|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK053897|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK030696|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK172572|Tmx4|52837|thioredoxin-related transmembrane protein 4
mm9_v1_chr4_+_40669908_40669973	0.321654	ACUGGCC	NM_001164671|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	NM_001164672|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1
mm9_v1_chr12_+_39506844_39506916	0.297076	ACUGGCC	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr19_-_50752974_50753135	0.287783	ACUGGCC	AF137367|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF195056|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AF284755|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	NM_021377|Sorcs1|58178|VPS10 domain receptor protein SORCS 1	AK030440|Sorcs1|58178|VPS10 domain receptor protein SORCS 1
mm9_v1_chr10_+_68996455_68996596	0.287477	ACUGGCC	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr4_-_53172748_53172872	0.250526	ACUGGCC	AK051920|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1	NM_013454|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr15_+_81767188_81767324	0.23598	ACUGGCC	NM_145473|Csdc2|105859|cold shock domain containing C2, RNA binding	AK132493|Csdc2|105859|cold shock domain containing C2, RNA binding	AK028916|Csdc2|105859|cold shock domain containing C2, RNA binding
mm9_v1_chr10_-_108447674_108447736	0.222635	ACUGGCC	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr4_-_43591721_43591766	0.221787	ACUGGCC	AK173213|Gba2|230101|glucosidase beta 2	AK158174|Gba2|230101|glucosidase beta 2	NM_172692|Gba2|230101|glucosidase beta 2
mm9_v1_chr11_+_105898183_105898284	0.220428	ACUGGCC	AK047435|Dcaf7|71833|DDB1 and CUL4 associated factor 7	NM_027946|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK005902|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK154757|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK165674|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK080823|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK137813|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048722|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048165|Dcaf7|71833|DDB1 and CUL4 associated factor 7
mm9_v1_chr13_+_42804911_42805054	0.220384	ACUGGCC	BC048407|Phactr1|218194|phosphatase and actin regulator 1	BC061691|Phactr1|218194|phosphatase and actin regulator 1	NM_001005740|Phactr1|218194|phosphatase and actin regulator 1	AK048208|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chrX_+_139952975_139953253	0.219684	ACUGGCC	AK158893|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195048|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AK031853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr16_+_20535519_20535657	0.217002	ACUGGCC	AK146517|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK168414|Ap2m1|11773|adaptor protein complex AP-2, mu1	NM_009679|Ap2m1|11773|adaptor protein complex AP-2, mu1	U27106|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK159534|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC056352|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK150358|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC089342|Ap2m1|11773|adaptor protein complex AP-2, mu1	BC094510|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK143586|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK141862|Ap2m1|11773|adaptor protein complex AP-2, mu1	AK172889|Ap2m1|11773|adaptor protein complex AP-2, mu1
mm9_v1_chr17_+_8994520_8994643	0.203469	ACUGGCC	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr17_+_26852581_26852657	0.203255	ACUGGCC	AK030092|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	NM_029870|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK044760|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK020796|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132423|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene	AK132454|A930001N09Rik|77128|RIKEN cDNA A930001N09 gene
mm9_v1_chr7_+_104728398_104728430	0.18431	ACUGGCC	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr12_-_15823590_15823683	0.180625	ACUGGCC	NM_144551|Trib2|217410|tribbles homolog 2 (Drosophila)	AK144192|Trib2|217410|tribbles homolog 2 (Drosophila)
mm9_v1_chr12_+_39510297_39510297	0.17879	ACUGGCC	AK032224|Etv1|14009|ets variant gene 1	NM_001163154|Etv1|14009|ets variant gene 1
mm9_v1_chr13_-_52626065_52626204	0.176485	ACUGGCC	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr7_-_25372613_25372684	0.173661	ACUGGCC	AK138180|Zfp575|101544|zinc finger protein 575	BC150867|Zfp575|101544|zinc finger protein 575	BC150873|Zfp575|101544|zinc finger protein 575	AK159025|Zfp575|101544|zinc finger protein 575	NM_001033205|Zfp575|101544|zinc finger protein 575
mm9_v1_chr1_-_77511653_77511664	0.166822	ACUGGCC	AK028509|Epha4|13838|Eph receptor A4	AK147698|Epha4|13838|Eph receptor A4	AK132203|Epha4|13838|Eph receptor A4	NM_007936|Epha4|13838|Eph receptor A4	S57168|Epha4|13838|Eph receptor A4	X65138|Epha4|13838|Eph receptor A4
mm9_v1_chr18_+_69504145_69504185	0.16584	ACUGGCC	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr3_-_146433544_146433656	0.160617	ACUGGCC	AK163585|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK148728|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164199|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr10_+_92623587_92623703	0.149666	ACUGGCC	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr3_+_90058166_90058262	0.137624	ACUGGCC	NM_028881|Crtc2|74343|CREB regulated transcription coactivator 2	BC032183|Crtc2|74343|CREB regulated transcription coactivator 2	AK169944|Crtc2|74343|CREB regulated transcription coactivator 2	BC033300|Crtc2|74343|CREB regulated transcription coactivator 2	BC023831|Crtc2|74343|CREB regulated transcription coactivator 2	AK156192|Crtc2|74343|CREB regulated transcription coactivator 2	AK079382|Crtc2|74343|CREB regulated transcription coactivator 2	AK172084|Crtc2|74343|CREB regulated transcription coactivator 2	BC023091|Crtc2|74343|CREB regulated transcription coactivator 2
mm9_v1_chr4_-_133189327_133189466	0.13056	ACUGGCC	NM_001017968|Zdhhc18|503610|zinc finger, DHHC domain containing 18
mm9_v1_chr6_+_45010040_45010086	0.130291	ACUGGCC	NM_001004357|Cntnap2|66797|contactin associated protein-like 2	AK129232|Cntnap2|66797|contactin associated protein-like 2
mm9_v1_chr4_-_141346551_141346594	0.127442	ACUGGCC	AK051048|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	NM_172338|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK028692|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK164023|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK154946|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16
mm9_v1_chr11_-_94183188_94183309	0.127156	ACUGGCC	AK014362|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	BC009092|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	NM_026313|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK078090|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK151228|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK151839|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK019464|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr6_-_149050201_149050210	0.1253	ACUGGCC	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr9_-_79641213_79641236	0.124062	ACUGGCC	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr3_-_146433200_146433208	0.119578	ACUGGCC	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr9_+_113840051_113840064	0.118822	ACUGGCC	AK143282|Ubp1|22221|upstream binding protein 1	NM_001083319|Ubp1|22221|upstream binding protein 1	NM_013699|Ubp1|22221|upstream binding protein 1
mm9_v1_chr2_-_103637795_103637829	0.110401	ACUGGCC	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr18_-_75857207_75857349	0.10645	ACUGGCC	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr2_+_121782185_121782265	0.105298	ACUGGCC	AK033382|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	NM_212450|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK169248|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK044805|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK053513|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC066219|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK030085|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK041422|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK049463|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK160431|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC052660|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm9_v1_chr15_-_76983985_76984241	0.0996364	ACUGGCC	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr3_-_84284304_84284362	0.0994081	ACUGGCC	BC042779|Fhdc1|229474|FH2 domain containing 1	AK145217|Fhdc1|229474|FH2 domain containing 1	NM_001033301|Fhdc1|229474|FH2 domain containing 1
mm9_v1_chr1_-_58642994_58643176	0.0851149	ACUGGCC	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr18_-_15562126_15562266	0.0832352	ACUGGCC	AK044074|Aqp4|11829|aquaporin 4	BC024526|Aqp4|11829|aquaporin 4	NM_009700|Aqp4|11829|aquaporin 4	AF469168|Aqp4|11829|aquaporin 4
mm9_v1_chr11_+_110927475_110927548	0.0750614	ACUGGCC	AK044915|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	NM_008425|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	X73052|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2
mm9_v1_chr2_-_160698705_160698728	0.07484	ACUGGCC	AK143296|Zhx3|320799|zinc fingers and homeoboxes 3	BC058111|Zhx3|320799|zinc fingers and homeoboxes 3	NM_177263|Zhx3|320799|zinc fingers and homeoboxes 3
mm9_v1_chr19_+_32832002_32832163	0.0729739	ACUGGCC	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr11_+_72503487_72503520	0.069326	ACUGGCC	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr3_-_95032589_95032623	0.0686962	ACUGGCC	AK152708|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11	NM_019914|Mllt11|56772|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm9_v1_chr5_-_33196860_33196908	0.0671922	ACUGGCC	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr4_-_151235861_151235879	0.0666052	ACUGGCC	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr5_-_124482223_124482295	0.0663037	ACUGGCC	AK082658|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172114|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172337|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK149893|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK166359|Vps37b|330192|vacuolar protein sorting 37B (yeast)	BC026744|Vps37b|330192|vacuolar protein sorting 37B (yeast)	NM_177876|Vps37b|330192|vacuolar protein sorting 37B (yeast)
mm9_v1_chr12_-_45311020_45311067	0.0640249	ACUGGCC	AB028857|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	BC096676|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	AK005475|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	NM_013760|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9
mm9_v1_chr2_-_181022670_181022690	0.0611937	ACUGGCC	BC059066|Gmeb2|229004|glucocorticoid modulatory element binding protein 2	NM_198169|Gmeb2|229004|glucocorticoid modulatory element binding protein 2
mm9_v1_chr6_+_113257130_113257306	0.0534333	ACUGGCC	AK043372|Brpf1|78783|bromodomain and PHD finger containing, 1	AK156375|Brpf1|78783|bromodomain and PHD finger containing, 1	BC046521|Brpf1|78783|bromodomain and PHD finger containing, 1	NM_030178|Brpf1|78783|bromodomain and PHD finger containing, 1	AK177868|Brpf1|78783|bromodomain and PHD finger containing, 1	BC138361|Brpf1|78783|bromodomain and PHD finger containing, 1	BC145256|Brpf1|78783|bromodomain and PHD finger containing, 1
mm9_v1_chr11_+_75345164_75345232	0.0533666	ACUGGCC	AB120363|Slc43a2|215113|solute carrier family 43, member 2	BC042513|Slc43a2|215113|solute carrier family 43, member 2	NM_173388|Slc43a2|215113|solute carrier family 43, member 2
mm9_v1_chr8_-_97666364_97666472	0.0520655	ACUGGCC	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr19_+_8815893_8816001	0.0518604	ACUGGCC	NM_001167799|Stx5a|56389|syntaxin 5A	AK002722|Stx5a|56389|syntaxin 5A	BC004849|Stx5a|56389|syntaxin 5A
mm9_v1_chr6_+_47194393_47194453	0.0483848	ACUGGCC	NM_025771|Cntnap2|66797|contactin associated protein-like 2	AK017341|Cntnap2|66797|contactin associated protein-like 2	AK013139|Cntnap2|66797|contactin associated protein-like 2	BC029826|Cntnap2|66797|contactin associated protein-like 2	BC103799|Cntnap2|66797|contactin associated protein-like 2
mm9_v1_chr19_+_8816292_8816349	0.0454706	ACUGGCC	AK166087|Stx5a|56389|syntaxin 5A	NM_019829|Stx5a|56389|syntaxin 5A	BC021883|Stx5a|56389|syntaxin 5A
mm9_v1_chr12_+_88019649_88019727	0.0403536	ACUGGCC	AB284948|Vash1|238328|vasohibin 1	AK090166|Vash1|238328|vasohibin 1	NM_177354|Vash1|238328|vasohibin 1	AK086583|Vash1|238328|vasohibin 1
mm9_v1_chr2_+_132088974_132089064	0.0347203	ACUGGCC	AK050589|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	BC003852|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK147541|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	NM_138651|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK170888|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK036328|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK166001|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm9_v1_chr18_-_46440360_46440503	0.0340632	ACUGGCC	AK028188|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK170240|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	BC141021|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	AK081731|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit	NM_172627|Pggt1b|225467|protein geranylgeranyltransferase type I, beta subunit
mm9_v1_chr12_-_77811533_77811533	0.0327916	ACUGGCC	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr6_-_144157971_144158077	0.0325962	ACUGGCC	BC110478|Sox5|20678|SRY-box containing gene 5	AK132307|Sox5|20678|SRY-box containing gene 5	AB006330|Sox5|20678|SRY-box containing gene 5	AJ010604|Sox5|20678|SRY-box containing gene 5	NM_001113559|Sox5|20678|SRY-box containing gene 5	NM_011444|Sox5|20678|SRY-box containing gene 5
mm9_v1_chr1_-_63160764_63160840	0.0318861	ACUGGCC	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr12_-_80190607_80190656	0.0315135	ACUGGCC	BC086806|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK030744|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK020902|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	AK167892|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H	NM_029988|Pigh|110417|phosphatidylinositol glycan anchor biosynthesis, class H
mm9_v1_chr12_+_111723922_111723992	0.0308014	ACUGGCC	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr6_-_39675456_39675512	0.0263685	ACUGGCC	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr10_+_128227964_128228056	0.0244046	ACUGGCC	AK079924|Mmp19|58223|matrix metallopeptidase 19	NM_001164197|Mmp19|58223|matrix metallopeptidase 19	AK080125|Mmp19|58223|matrix metallopeptidase 19	AK136517|Mmp19|58223|matrix metallopeptidase 19	NM_021412|Mmp19|58223|matrix metallopeptidase 19	AK154863|Mmp19|58223|matrix metallopeptidase 19	AF155221|Mmp19|58223|matrix metallopeptidase 19	AF162446|Mmp19|58223|matrix metallopeptidase 19	BC112966|Mmp19|58223|matrix metallopeptidase 19	AF153199|Mmp19|58223|matrix metallopeptidase 19
mm9_v1_chr1_+_65233222_65233323	0.0230066	ACUGGCC	AK139116|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	NM_011086|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK165350|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK080527|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AF102777|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK143565|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK173077|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing
mm9_v1_chr16_+_4886183_4886360	0.0190305	ACUGGCC	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr10_+_83006673_83006768	0.0175037	ACUGGCC	NM_001033375|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK145000|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK166233|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK043911|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK038582|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene
mm9_v1_chr6_-_145198693_145198778	0.0164959	ACUGGCC	BC119495|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC004642|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC010202|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK155064|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK164065|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	NM_021284|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr12_-_91976586_91976877	0.0101327	ACUGGCC	AK032038|Dio2|13371|deiodinase, iodothyronine, type II	AK045607|Dio2|13371|deiodinase, iodothyronine, type II	AF177196|Dio2|13371|deiodinase, iodothyronine, type II	AF177197|Dio2|13371|deiodinase, iodothyronine, type II	AF093137|Dio2|13371|deiodinase, iodothyronine, type II	BC125383|Dio2|13371|deiodinase, iodothyronine, type II	BC125385|Dio2|13371|deiodinase, iodothyronine, type II	AF096875|Dio2|13371|deiodinase, iodothyronine, type II	NM_010050|Dio2|13371|deiodinase, iodothyronine, type II
mm9_v1_chr18_-_39078304_39078358	0.0093757	ACUGGCC	U67610|Fgf1|14164|fibroblast growth factor 1	AK035330|Fgf1|14164|fibroblast growth factor 1	NM_010197|Fgf1|14164|fibroblast growth factor 1
mm9_v1_chr4_+_125168074_125168079	0.00695818	ACUGGCC	NM_001081097|Grik3|14807|glutamate receptor, ionotropic, kainate 3	BC118004|Grik3|14807|glutamate receptor, ionotropic, kainate 3
mm9_v1_chr15_-_77137425_77137482	0.00684197	ACUGGCC	AK139555|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110827|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_053104|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_175387|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr4_+_13711928_13711928	0.00651087	ACUGGCC	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chrX_-_12339096_12339247	0.00576998	ACUGGCC	AB019028|Med14|26896|mediator complex subunit 14	NM_001048208|Med14|26896|mediator complex subunit 14	NM_012005|Med14|26896|mediator complex subunit 14	BC065072|Med14|26896|mediator complex subunit 14
mm9_v1_chr8_-_89269853_89269958	0.00511247	ACUGGCC	BC046317|Siah1a|20437|seven in absentia 1A	NM_009172|Siah1a|20437|seven in absentia 1A
mm9_v1_chr15_-_79762947_79763095	0.00453723	ACUGGCC	AB221539|Cbx7|52609|chromobox homolog 7	AK045714|Cbx7|52609|chromobox homolog 7	NM_144811|Cbx7|52609|chromobox homolog 7
mm9_v1_chr4_-_129317873_129317883	0.00319678	ACUGGCC	BC060227|Txlna|109658|taxilin alpha	BC065115|Txlna|109658|taxilin alpha	NM_001005506|Txlna|109658|taxilin alpha
mm9_v1_chr7_+_19511230_19511244	0.00278554	ACUGGCC	NM_001029877|Nova2|384569|neuro-oncological ventral antigen 2
mm9_v1_chr4_-_45024999_45025283	0.00178984	ACUGGCC	AK160003|Zbtb5|230119|zinc finger and BTB domain containing 5	BC054551|Zbtb5|230119|zinc finger and BTB domain containing 5	AK031172|Zbtb5|230119|zinc finger and BTB domain containing 5	AY635051|Zbtb5|230119|zinc finger and BTB domain containing 5	BC057545|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163283|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_001163284|Zbtb5|230119|zinc finger and BTB domain containing 5	NM_173399|Zbtb5|230119|zinc finger and BTB domain containing 5
mm9_v1_chr6_+_88034462_88034491	0.00169803	ACUGGCC	NM_133933|Rpn1|103963|ribophorin I
mm9_v1_chr5_-_107718503_107718613	0.00113901	ACUGGCC	AK165763|Tgfbr3|21814|transforming growth factor, beta receptor III	BC070428|Tgfbr3|21814|transforming growth factor, beta receptor III	AK166082|Tgfbr3|21814|transforming growth factor, beta receptor III	NM_011578|Tgfbr3|21814|transforming growth factor, beta receptor III
mm9_v1_chr18_+_65047408_65047414	7.26856e-05	ACUGGCC	NM_001114386|Nedd4l|83814|neural precursor cell expressed, developmentally down-regulated gene 4-like
