mm9_v1_chr15_+_78757148_78757164	3.81538	AGCUGCC	NM_008495|Lgals1|16852|lectin, galactose binding, soluble 1	X66532|Lgals1|16852|lectin, galactose binding, soluble 1	AK004298|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr4_-_134828503_134828682	2.84806	AGCUGCC	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr12_+_3891743_3891823	2.14734	AGCUGCC	AF480164|Dnmt3a|13435|DNA methyltransferase 3A	NM_153743|Dnmt3a|13435|DNA methyltransferase 3A	AK157792|Dnmt3a|13435|DNA methyltransferase 3A	AK077792|Dnmt3a|13435|DNA methyltransferase 3A	AK136170|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr14_+_27852148_27852279	2.1442	AGCUGCC	AF494210|Il17rd|171463|interleukin 17 receptor D	NM_134437|Il17rd|171463|interleukin 17 receptor D	BC138629|Il17rd|171463|interleukin 17 receptor D	BC066804|Il17rd|171463|interleukin 17 receptor D	AF459444|Il17rd|171463|interleukin 17 receptor D
mm9_v1_chr18_+_82723854_82723899	1.85841	AGCUGCC	NM_001025251|Mbp|17196|myelin basic protein	NM_001025255|Mbp|17196|myelin basic protein	NM_001025256|Mbp|17196|myelin basic protein	NM_001025258|Mbp|17196|myelin basic protein	NM_001025259|Mbp|17196|myelin basic protein	AK079621|Mbp|17196|myelin basic protein	NM_001025254|Mbp|17196|myelin basic protein
mm9_v1_chr5_+_115224911_115225148	1.85188	AGCUGCC	AK039432|Ankrd13a|68420|ankyrin repeat domain 13a	AK156539|Ankrd13a|68420|ankyrin repeat domain 13a	BC049187|Ankrd13a|68420|ankyrin repeat domain 13a	BC061692|Ankrd13a|68420|ankyrin repeat domain 13a	NM_026718|Ankrd13a|68420|ankyrin repeat domain 13a
mm9_v1_chr4_-_99495806_99495876	1.77689	AGCUGCC	AK045037|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK166362|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	NM_026348|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK179730|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	BC049557|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK013373|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK015557|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK153726|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK088352|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK165072|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)	AK005779|Itgb3bp|67733|integrin beta 3 binding protein (beta3-endonexin)
mm9_v1_chr4_+_140257340_140257464	1.75743	AGCUGCC	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr2_+_4802609_4802674	1.7271	AGCUGCC	BC066037|Sephs1|109079|selenophosphate synthetase 1	NM_175400|Sephs1|109079|selenophosphate synthetase 1	BC065165|Sephs1|109079|selenophosphate synthetase 1	AK044971|Sephs1|109079|selenophosphate synthetase 1
mm9_v1_chr11_+_98769162_98769202	1.67606	AGCUGCC	AK162669|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK075975|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK085020|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK012192|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	BC052434|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_001025779|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr10_-_59414516_59414582	1.62787	AGCUGCC	BC131992|Ddit4|74747|DNA-damage-inducible transcript 4	BC132645|Ddit4|74747|DNA-damage-inducible transcript 4	BC145370|Ddit4|74747|DNA-damage-inducible transcript 4	AK017926|Ddit4|74747|DNA-damage-inducible transcript 4	NM_029083|Ddit4|74747|DNA-damage-inducible transcript 4	AK081046|Ddit4|74747|DNA-damage-inducible transcript 4
mm9_v1_chr13_-_3917356_3917465	1.62064	AGCUGCC	AF094520|Net1|56349|neuroepithelial cell transforming gene 1	AK077728|Net1|56349|neuroepithelial cell transforming gene 1	NM_019671|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr2_-_153067043_153067211	1.42055	AGCUGCC	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr18_+_61265225_61265605	1.36292	AGCUGCC	AK146069|Csf1r|12978|colony stimulating factor 1 receptor	NM_001037859|Csf1r|12978|colony stimulating factor 1 receptor	BC066863|Csf1r|12978|colony stimulating factor 1 receptor	BC050024|Csf1r|12978|colony stimulating factor 1 receptor	AK171241|Csf1r|12978|colony stimulating factor 1 receptor	AK156550|Csf1r|12978|colony stimulating factor 1 receptor	AK155565|Csf1r|12978|colony stimulating factor 1 receptor	AK155488|Csf1r|12978|colony stimulating factor 1 receptor	AK079247|Csf1r|12978|colony stimulating factor 1 receptor	AK155576|Csf1r|12978|colony stimulating factor 1 receptor	AK155858|Csf1r|12978|colony stimulating factor 1 receptor	AK154128|Csf1r|12978|colony stimulating factor 1 receptor	AK155640|Csf1r|12978|colony stimulating factor 1 receptor	AK155654|Csf1r|12978|colony stimulating factor 1 receptor	AK171386|Csf1r|12978|colony stimulating factor 1 receptor	AK004947|Csf1r|12978|colony stimulating factor 1 receptor	AK154556|Csf1r|12978|colony stimulating factor 1 receptor	AK154653|Csf1r|12978|colony stimulating factor 1 receptor	AK154699|Csf1r|12978|colony stimulating factor 1 receptor	AK076215|Csf1r|12978|colony stimulating factor 1 receptor	AK143545|Csf1r|12978|colony stimulating factor 1 receptor	X06368|Csf1r|12978|colony stimulating factor 1 receptor	X68932|Csf1r|12978|colony stimulating factor 1 receptor	AK080326|Csf1r|12978|colony stimulating factor 1 receptor	BC043054|Csf1r|12978|colony stimulating factor 1 receptor	AK089498|Csf1r|12978|colony stimulating factor 1 receptor	AK171543|Csf1r|12978|colony stimulating factor 1 receptor	BC036343|Csf1r|12978|colony stimulating factor 1 receptor	AK041299|Csf1r|12978|colony stimulating factor 1 receptor
mm9_v1_chr1_-_155179844_155179930	1.34302	AGCUGCC	J02930|Lamc1|226519|laminin, gamma 1	AK144233|Lamc1|226519|laminin, gamma 1	J03484|Lamc1|226519|laminin, gamma 1	NM_010683|Lamc1|226519|laminin, gamma 1
mm9_v1_chr3_-_145312928_145312948	1.30916	AGCUGCC	BC066019|Cyr61|16007|cysteine rich protein 61	BC003205|Cyr61|16007|cysteine rich protein 61	AK156723|Cyr61|16007|cysteine rich protein 61	AK159452|Cyr61|16007|cysteine rich protein 61	M32490|Cyr61|16007|cysteine rich protein 61	NM_010516|Cyr61|16007|cysteine rich protein 61
mm9_v1_chr13_-_54789148_54789168	1.24693	AGCUGCC	AK147349|Rnf44|105239|ring finger protein 44	NM_001146025|Rnf44|105239|ring finger protein 44	NM_001146026|Rnf44|105239|ring finger protein 44	NM_134064|Rnf44|105239|ring finger protein 44
mm9_v1_chr14_+_35487052_35487113	1.19888	AGCUGCC	AK046038|Wapal|218914|wings apart-like homolog (Drosophila)	AK129105|Wapal|218914|wings apart-like homolog (Drosophila)	NM_001004436|Wapal|218914|wings apart-like homolog (Drosophila)
mm9_v1_chr4_+_11083585_11083598	1.18654	AGCUGCC	AJ131776|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034611|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034612|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	NM_021897|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK054214|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK142321|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1
mm9_v1_chr2_-_28771940_28771959	1.18436	AGCUGCC	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr11_+_51433236_51433386	1.15546	AGCUGCC	AK008766|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK019134|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	NM_026631|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	BC024944|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK007340|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK193298|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)	AK199159|Nhp2|52530|NHP2 ribonucleoprotein homolog (yeast)
mm9_v1_chr4_+_122673318_122673349	1.15141	AGCUGCC	AK146959|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	BC053059|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	BC089346|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	NM_008506|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)
mm9_v1_chr3_+_129235284_129235325	1.14417	AGCUGCC	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr4_-_33010429_33010479	1.08685	AGCUGCC	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr1_-_153937364_153937449	1.08236	AGCUGCC	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr4_+_147415297_147415395	1.07127	AGCUGCC	AK150159|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	NM_001161798|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AK149795|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	BC052466|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AF404273|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	BC051017|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr4_+_47366162_47366183	1.06823	AGCUGCC	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr11_+_115891591_115891668	0.985625	AGCUGCC	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr10_-_62801726_62801784	0.984047	AGCUGCC	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr9_-_65675327_65675370	0.967681	AGCUGCC	BC016271|Zfp609|214812|zinc finger protein 609	NM_172536|Zfp609|214812|zinc finger protein 609
mm9_v1_chr13_+_44826121_44826271	0.959153	AGCUGCC	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr14_-_70999625_70999666	0.954177	AGCUGCC	NM_194345|Fam160b2|239170|family with sequence similarity 160, member B2	BC050861|Fam160b2|239170|family with sequence similarity 160, member B2
mm9_v1_chr19_-_41922577_41922621	0.952959	AGCUGCC	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr15_+_80629020_80629144	0.952024	AGCUGCC	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr6_+_120616386_120616438	0.947935	AGCUGCC	AK137536|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)	NM_001128151|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)
mm9_v1_chrX_+_39503858_39503966	0.938098	AGCUGCC	AK146718|Stag2|20843|stromal antigen 2	AK168899|Stag2|20843|stromal antigen 2	NM_021465|Stag2|20843|stromal antigen 2
mm9_v1_chr10_-_128133261_128133372	0.907944	AGCUGCC	AK144551|Rab5b|19344|RAB5B, member RAS oncogene family	AK083034|Rab5b|19344|RAB5B, member RAS oncogene family	AK081251|Rab5b|19344|RAB5B, member RAS oncogene family	NM_177411|Rab5b|19344|RAB5B, member RAS oncogene family
mm9_v1_chr7_+_106683983_106683997	0.856684	AGCUGCC	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr8_+_107064705_107064811	0.848275	AGCUGCC	AK090390|Car7|12354|carbonic anhydrase 7	AY075021|Car7|12354|carbonic anhydrase 7	NM_053070|Car7|12354|carbonic anhydrase 7	BC094913|Car7|12354|carbonic anhydrase 7	AF291660|Car7|12354|carbonic anhydrase 7
mm9_v1_chr5_-_100407805_100407989	0.842934	AGCUGCC	U11273|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK135733|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK077409|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	BC049098|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077265|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077266|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077267|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_007516|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr2_+_75497282_75497379	0.83406	AGCUGCC	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr16_+_37777075_37777220	0.81264	AGCUGCC	BC006185|Fstl1|14314|follistatin-like 1	AK049440|Fstl1|14314|follistatin-like 1	NM_008047|Fstl1|14314|follistatin-like 1	AK147117|Fstl1|14314|follistatin-like 1	BC028921|Fstl1|14314|follistatin-like 1	M91380|Fstl1|14314|follistatin-like 1
mm9_v1_chr1_+_64579358_64579513	0.807888	AGCUGCC	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr16_+_15887375_15887382	0.801889	AGCUGCC	AK053190|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	AK151958|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	AK156762|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	BC139293|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	NM_007679|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta
mm9_v1_chr7_+_19705202_19705237	0.790795	AGCUGCC	NM_175530|Fbxo46|243867|F-box protein 46	AK030147|Fbxo46|243867|F-box protein 46	BC049813|Fbxo46|243867|F-box protein 46
mm9_v1_chr9_+_109778051_109778082	0.755681	AGCUGCC	AK077991|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)	NM_007658|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)
mm9_v1_chr13_+_49703402_49703439	0.744602	AGCUGCC	AK028300|Ogn|18295|osteoglycin	AK160760|Ogn|18295|osteoglycin	AK053650|Ogn|18295|osteoglycin	NM_008760|Ogn|18295|osteoglycin
mm9_v1_chr4_-_108251843_108251953	0.743044	AGCUGCC	BC025853|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	BC139277|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	BC139305|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	AK169741|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	BC024734|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	AK075925|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	NM_172697|Prpf38a|230596|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
mm9_v1_chr1_-_145851257_145851282	0.733689	AGCUGCC	AF432916|Rgs2|19735|regulator of G-protein signaling 2	BC023001|Rgs2|19735|regulator of G-protein signaling 2	AF215668|Rgs2|19735|regulator of G-protein signaling 2	U67187|Rgs2|19735|regulator of G-protein signaling 2	AK029310|Rgs2|19735|regulator of G-protein signaling 2	AK031603|Rgs2|19735|regulator of G-protein signaling 2	AK077922|Rgs2|19735|regulator of G-protein signaling 2	AK162276|Rgs2|19735|regulator of G-protein signaling 2	NM_009061|Rgs2|19735|regulator of G-protein signaling 2
mm9_v1_chr17_-_56749096_56749193	0.705935	AGCUGCC	BC056164|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	BC049674|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AK075942|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AY091637|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	AK075961|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene	NM_153152|2410015M20Rik|224904|RIKEN cDNA 2410015M20 gene
mm9_v1_chr3_+_102862151_102862295	0.698259	AGCUGCC	X13664|Nras|18176|neuroblastoma ras oncogene	NM_010937|Nras|18176|neuroblastoma ras oncogene	AK011704|Nras|18176|neuroblastoma ras oncogene	AK165960|Nras|18176|neuroblastoma ras oncogene	AK150357|Nras|18176|neuroblastoma ras oncogene	BC058755|Nras|18176|neuroblastoma ras oncogene	BC014704|Nras|18176|neuroblastoma ras oncogene	BC051443|Nras|18176|neuroblastoma ras oncogene
mm9_v1_chr13_-_54789548_54789560	0.693063	AGCUGCC	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr3_+_60305108_60305212	0.659591	AGCUGCC	AK162039|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK149405|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AB093240|Mbnl1|56758|muscleblind-like 1 (Drosophila)	NM_020007|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK088871|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK153848|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC060031|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC096600|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr2_+_142888774_142888806	0.655323	AGCUGCC	AK011274|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	BC026794|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK012944|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK013871|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	NM_021335|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK005107|Snrpb2|20639|U2 small nuclear ribonucleoprotein B
mm9_v1_chr9_-_42913797_42913909	0.652125	AGCUGCC	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr1_+_135142673_135142702	0.649366	AGCUGCC	NM_001160268|Plekha6|240753|pleckstrin homology domain containing, family A member 6	NM_182930|Plekha6|240753|pleckstrin homology domain containing, family A member 6	BC054547|Plekha6|240753|pleckstrin homology domain containing, family A member 6	AK173074|Plekha6|240753|pleckstrin homology domain containing, family A member 6
mm9_v1_chr3_-_107135939_107136206	0.642197	AGCUGCC	BC080828|Rbm15|229700|RNA binding motif protein 15	AK048987|Rbm15|229700|RNA binding motif protein 15	BC051409|Rbm15|229700|RNA binding motif protein 15	AK168242|Rbm15|229700|RNA binding motif protein 15	AK166271|Rbm15|229700|RNA binding motif protein 15	BC057038|Rbm15|229700|RNA binding motif protein 15	AK220162|Rbm15|229700|RNA binding motif protein 15	AK168936|Rbm15|229700|RNA binding motif protein 15	BC120590|Rbm15|229700|RNA binding motif protein 15	BC137741|Rbm15|229700|RNA binding motif protein 15	NM_001045807|Rbm15|229700|RNA binding motif protein 15
mm9_v1_chr11_+_94491055_94491166	0.630835	AGCUGCC	AK159374|Lrrc59|98238|leucine rich repeat containing 59	AK159552|Lrrc59|98238|leucine rich repeat containing 59	AK166576|Lrrc59|98238|leucine rich repeat containing 59	AK053450|Lrrc59|98238|leucine rich repeat containing 59	BC006877|Lrrc59|98238|leucine rich repeat containing 59	NM_133807|Lrrc59|98238|leucine rich repeat containing 59	AK169390|Lrrc59|98238|leucine rich repeat containing 59	BC066172|Lrrc59|98238|leucine rich repeat containing 59	AK167604|Lrrc59|98238|leucine rich repeat containing 59	AK169250|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr18_-_58369579_58369752	0.623487	AGCUGCC	AK132163|Fbn2|14119|fibrillin 2	NM_010181|Fbn2|14119|fibrillin 2
mm9_v1_chr11_-_62352690_62352764	0.615479	AGCUGCC	BC147794|Cenpv|73139|centromere protein V	BC147795|Cenpv|73139|centromere protein V	BC147835|Cenpv|73139|centromere protein V	BC147837|Cenpv|73139|centromere protein V	AK014046|Cenpv|73139|centromere protein V	NM_028448|Cenpv|73139|centromere protein V
mm9_v1_chr19_+_36908682_36908797	0.606889	AGCUGCC	NM_001163635|Tnks2|74493|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm9_v1_chr4_+_137024656_137024742	0.606137	AGCUGCC	AK147294|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	AK147396|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	NM_008305|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)
mm9_v1_chr3_+_84756090_84756352	0.593445	AGCUGCC	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr1_-_179178874_179178897	0.592042	AGCUGCC	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr19_-_5609896_5610062	0.586266	AGCUGCC	AK195015|Kat5|81601|K(lysine) acetyltransferase 5	AK159568|Kat5|81601|K(lysine) acetyltransferase 5	AK160077|Kat5|81601|K(lysine) acetyltransferase 5	BC129967|Kat5|81601|K(lysine) acetyltransferase 5	AF528195|Kat5|81601|K(lysine) acetyltransferase 5	AF528196|Kat5|81601|K(lysine) acetyltransferase 5	BC129968|Kat5|81601|K(lysine) acetyltransferase 5	DQ139980|Kat5|81601|K(lysine) acetyltransferase 5	NM_178637|Kat5|81601|K(lysine) acetyltransferase 5	BC110675|Kat5|81601|K(lysine) acetyltransferase 5	AK143674|Kat5|81601|K(lysine) acetyltransferase 5	AK146352|Kat5|81601|K(lysine) acetyltransferase 5
mm9_v1_chr5_+_108494692_108494781	0.576735	AGCUGCC	AK031409|Mtf2|17765|metal response element binding transcription factor 2	BC024889|Mtf2|17765|metal response element binding transcription factor 2	AK032798|Mtf2|17765|metal response element binding transcription factor 2	AK032819|Mtf2|17765|metal response element binding transcription factor 2	AK137539|Mtf2|17765|metal response element binding transcription factor 2	BC050826|Mtf2|17765|metal response element binding transcription factor 2	AK030752|Mtf2|17765|metal response element binding transcription factor 2	AB050541|Mtf2|17765|metal response element binding transcription factor 2	BC092237|Mtf2|17765|metal response element binding transcription factor 2	NM_013827|Mtf2|17765|metal response element binding transcription factor 2	BC100340|Mtf2|17765|metal response element binding transcription factor 2	BC029076|Mtf2|17765|metal response element binding transcription factor 2
mm9_v1_chr16_+_24393435_24393655	0.567402	AGCUGCC	NM_178665|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK168431|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK085626|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051345|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045288|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045341|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051937|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK086307|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK169780|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr12_+_54349663_54349663	0.564975	AGCUGCC	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr15_+_102236709_102236810	0.563252	AGCUGCC	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr11_+_50191220_50191290	0.562656	AGCUGCC	NM_021510|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC016459|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK052983|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	AK088169|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	Y14196|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC042187|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1	BC056224|Hnrnph1|59013|heterogeneous nuclear ribonucleoprotein H1
mm9_v1_chr2_-_156904966_156905000	0.560035	AGCUGCC	AK147227|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene	NM_001164663|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene
mm9_v1_chr6_-_134742645_134742743	0.557475	AGCUGCC	AK144800|Dusp16|70686|dual specificity phosphatase 16	NM_001048054|Dusp16|70686|dual specificity phosphatase 16	NM_130447|Dusp16|70686|dual specificity phosphatase 16
mm9_v1_chr11_+_58144207_58144291	0.551582	AGCUGCC	AK156171|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK159202|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK172333|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_001161338|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_024480|Sh3bp5l|79566|SH3 binding domain protein 5 like	BC094418|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK166491|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK144928|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK086088|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK150129|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK167203|Sh3bp5l|79566|SH3 binding domain protein 5 like
mm9_v1_chr4_-_139388882_139388882	0.542773	AGCUGCC	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr4_-_151370212_151370359	0.53199	AGCUGCC	AY069976|Phf13|230936|PHD finger protein 13	BC029632|Phf13|230936|PHD finger protein 13	BC059282|Phf13|230936|PHD finger protein 13	NM_172705|Phf13|230936|PHD finger protein 13	AK132066|Phf13|230936|PHD finger protein 13
mm9_v1_chr14_+_56503783_56503825	0.531059	AGCUGCC	AK136301|Khnyn|219094|KH and NYN domain containing	AK033704|Khnyn|219094|KH and NYN domain containing	NM_027143|Khnyn|219094|KH and NYN domain containing	AK047054|Khnyn|219094|KH and NYN domain containing	BC116260|Khnyn|219094|KH and NYN domain containing	BC116261|Khnyn|219094|KH and NYN domain containing
mm9_v1_chr8_-_124175827_124175832	0.512265	AGCUGCC	BC132449|Zcchc14|142682|zinc finger, CCHC domain containing 14	BC137853|Zcchc14|142682|zinc finger, CCHC domain containing 14	AB030244|Zcchc14|142682|zinc finger, CCHC domain containing 14	NM_080855|Zcchc14|142682|zinc finger, CCHC domain containing 14
mm9_v1_chr18_-_75120759_75120936	0.510889	AGCUGCC	BC020991|Lipg|16891|lipase, endothelial	AF118768|Lipg|16891|lipase, endothelial	AK090224|Lipg|16891|lipase, endothelial	AK152430|Lipg|16891|lipase, endothelial	AK152161|Lipg|16891|lipase, endothelial	AK153541|Lipg|16891|lipase, endothelial	AK152872|Lipg|16891|lipase, endothelial	AK172101|Lipg|16891|lipase, endothelial	NM_010720|Lipg|16891|lipase, endothelial
mm9_v1_chr5_+_67651890_67652024	0.504846	AGCUGCC	AK012413|Tmem33|67878|transmembrane protein 33	NM_028975|Tmem33|67878|transmembrane protein 33	NM_030108|Tmem33|67878|transmembrane protein 33	AK032555|Tmem33|67878|transmembrane protein 33	AK005493|Tmem33|67878|transmembrane protein 33	AK007750|Tmem33|67878|transmembrane protein 33	AK017281|Tmem33|67878|transmembrane protein 33	AK153441|Tmem33|67878|transmembrane protein 33	AK007607|Tmem33|67878|transmembrane protein 33	BC005562|Tmem33|67878|transmembrane protein 33	AK165369|Tmem33|67878|transmembrane protein 33
mm9_v1_chr17_+_29797537_29797684	0.504177	AGCUGCC	AK080379|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	NM_028791|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK049190|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK154773|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK042060|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK043733|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK088624|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK150392|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK151194|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152276|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152799|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153021|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153066|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	BC024691|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK005044|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152452|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK198101|Ftsjd2|74157|FtsJ methyltransferase domain containing 2
mm9_v1_chr6_-_83267540_83267619	0.499687	AGCUGCC	J04627|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK076801|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK076019|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK159680|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK166262|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	BC019511|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK152249|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK165840|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	NM_008638|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase
mm9_v1_chr4_+_118781336_118781380	0.497345	AGCUGCC	NM_011400|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M23384|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	BC055340|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr5_-_114830457_114830513	0.494134	AGCUGCC	AK147714|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK163351|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK161199|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK028657|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK041516|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK145295|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK166505|Kctd10|330171|potassium channel tetramerisation domain containing 10	BC006935|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_001159941|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_026145|Kctd10|330171|potassium channel tetramerisation domain containing 10
mm9_v1_chr10_-_122513447_122513560	0.469437	AGCUGCC	AK122425|Mon2|67074|MON2 homolog (yeast)	NM_001163024|Mon2|67074|MON2 homolog (yeast)	NM_001163025|Mon2|67074|MON2 homolog (yeast)	NM_153395|Mon2|67074|MON2 homolog (yeast)
mm9_v1_chr1_+_194014677_194014800	0.468018	AGCUGCC	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chr19_-_60656627_60656934	0.463201	AGCUGCC	AK036606|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK169791|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK019216|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	BC026363|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK147382|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172096|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172097|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_030197|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene
mm9_v1_chrX_-_71330931_71331012	0.458194	AGCUGCC	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr4_+_147413185_147413279	0.456793	AGCUGCC	AF404271|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	NM_010840|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AK030192|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AF404272|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr10_-_95026787_95026872	0.455241	AGCUGCC	NM_027722|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr6_+_116288075_116288140	0.454513	AGCUGCC	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr4_+_138011061_138011100	0.453523	AGCUGCC	NM_025451|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1	AY523601|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr4_-_133843746_133843812	0.447033	AGCUGCC	BC058514|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_146156|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK164975|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr5_+_64551449_64551546	0.429322	AGCUGCC	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr7_+_149135647_149135669	0.426383	AGCUGCC	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr7_-_54263783_54263783	0.421264	AGCUGCC	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr7_+_134628622_134628734	0.414287	AGCUGCC	NM_010183|Fbrs|14123|fibrosin
mm9_v1_chr2_+_145728955_145729042	0.403912	AGCUGCC	AK009229|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit	NM_001141965|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit	NM_026425|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit	AK153145|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit	AK005143|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit	BC009157|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit	BC116374|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit	BC096451|Naa20|67877|N(alpha)-acetyltransferase 20, NatB catalytic subunit
mm9_v1_chr19_-_5912757_5912865	0.403078	AGCUGCC	U10435|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK215194|Dpf2|19708|D4, zinc and double PHD fingers family 2	BC012709|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK138047|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144848|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK019051|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144106|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK004812|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144954|Dpf2|19708|D4, zinc and double PHD fingers family 2	U43921|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK145851|Dpf2|19708|D4, zinc and double PHD fingers family 2	NM_011262|Dpf2|19708|D4, zinc and double PHD fingers family 2
mm9_v1_chr9_-_48644030_48644051	0.39791	AGCUGCC	AK040211|Zbtb16|235320|zinc finger and BTB domain containing 16	AK142947|Zbtb16|235320|zinc finger and BTB domain containing 16	NM_001033324|Zbtb16|235320|zinc finger and BTB domain containing 16
mm9_v1_chr17_+_28828286_28828455	0.391309	AGCUGCC	BC012235|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168508|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168514|Mapk14|26416|mitogen-activated protein kinase 14	NM_011951|Mapk14|26416|mitogen-activated protein kinase 14	BC085303|Mapk14|26416|mitogen-activated protein kinase 14	AK089059|Mapk14|26416|mitogen-activated protein kinase 14	AK133684|Mapk14|26416|mitogen-activated protein kinase 14	AF128892|Mapk14|26416|mitogen-activated protein kinase 14	BC018227|Mapk14|26416|mitogen-activated protein kinase 14	U10871|Mapk14|26416|mitogen-activated protein kinase 14	D83073|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr16_-_89960987_89961071	0.383217	AGCUGCC	AK017465|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_009384|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	U05245|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr10_+_127176590_127176697	0.378273	AGCUGCC	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr11_+_115794942_115794982	0.374172	AGCUGCC	AK147869|Sap30bp|57230|SAP30 binding protein	AK012245|Sap30bp|57230|SAP30 binding protein	BC021757|Sap30bp|57230|SAP30 binding protein	NM_020483|Sap30bp|57230|SAP30 binding protein	X68061|Sap30bp|57230|SAP30 binding protein
mm9_v1_chr9_+_100978450_100978485	0.372724	AGCUGCC	NM_001100451|Msl2|77853|male-specific lethal 2 homolog (Drosophila)	BC070432|Msl2|77853|male-specific lethal 2 homolog (Drosophila)
mm9_v1_chr15_+_80541675_80541764	0.372157	AGCUGCC	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr10_-_128258639_128258702	0.356651	AGCUGCC	AK002824|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK002583|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	AK013455|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	BC002146|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)	NM_024180|Ormdl2|66844|ORM1-like 2 (S. cerevisiae)
mm9_v1_chr1_-_134603848_134603902	0.350552	AGCUGCC	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr18_+_36823713_36823835	0.349527	AGCUGCC	BC061242|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	NM_201256|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC111107|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC038258|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	AY226182|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3
mm9_v1_chr2_+_36085945_36085997	0.340263	AGCUGCC	AK159907|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	NM_008969|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr1_-_34899878_34899900	0.333892	AGCUGCC	AK220453|Fam168b|214469|family with sequence similarity 168, member B	NM_001160235|Fam168b|214469|family with sequence similarity 168, member B	NM_001160236|Fam168b|214469|family with sequence similarity 168, member B	NM_174997|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr19_-_10379361_10379369	0.326041	AGCUGCC	NM_198114|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr5_+_65928483_65928591	0.325357	AGCUGCC	AK139564|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	NM_016786|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK048194|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK035371|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK018366|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK160728|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK031055|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK036068|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK162142|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AB011081|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	BC085311|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK166647|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)
mm9_v1_chr16_+_5050149_5050235	0.323977	AGCUGCC	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chr16_+_17233664_17233756	0.323845	AGCUGCC	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chr2_-_160738055_160738063	0.322282	AGCUGCC	BC054738|Emilin3|280635|elastin microfibril interfacer 3	BC057619|Emilin3|280635|elastin microfibril interfacer 3	NM_182840|Emilin3|280635|elastin microfibril interfacer 3
mm9_v1_chr12_+_81891479_81891592	0.321176	AGCUGCC	AK030233|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK161132|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK143867|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	BC040401|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	NM_178682|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK151939|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK152820|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK164823|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr2_-_25978328_25978339	0.320129	AGCUGCC	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr4_-_44180323_44180519	0.316937	AGCUGCC	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr2_+_52716901_52716906	0.311699	AGCUGCC	NM_172409|Fmnl2|71409|formin-like 2
mm9_v1_chr2_-_115890747_115890848	0.309567	AGCUGCC	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr11_-_117830554_117830679	0.305452	AGCUGCC	NM_007707|Socs3|12702|suppressor of cytokine signaling 3
mm9_v1_chr1_+_135027742_135027959	0.299528	AGCUGCC	NM_133819|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK082957|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK170862|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK167565|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC006897|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC058078|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm9_v1_chr2_+_119500777_119500991	0.29466	AGCUGCC	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr15_-_36937065_36937180	0.293839	AGCUGCC	AK132053|Zfp706|68036|zinc finger protein 706	AK167897|Zfp706|68036|zinc finger protein 706	AK168303|Zfp706|68036|zinc finger protein 706	BC054356|Zfp706|68036|zinc finger protein 706	AK167791|Zfp706|68036|zinc finger protein 706	BC052459|Zfp706|68036|zinc finger protein 706	NM_026521|Zfp706|68036|zinc finger protein 706
mm9_v1_chr1_+_74438182_74438368	0.292607	AGCUGCC	NM_153088|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	AK089478|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC049184|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC058085|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr6_-_31513817_31513936	0.292474	AGCUGCC	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr13_-_112280018_112280262	0.292402	AGCUGCC	BC067075|Gpbp1|73274|GC-rich promoter binding protein 1	AK136894|Gpbp1|73274|GC-rich promoter binding protein 1	AK161928|Gpbp1|73274|GC-rich promoter binding protein 1	BC094888|Gpbp1|73274|GC-rich promoter binding protein 1	AK169406|Gpbp1|73274|GC-rich promoter binding protein 1	AY382529|Gpbp1|73274|GC-rich promoter binding protein 1	AK082704|Gpbp1|73274|GC-rich promoter binding protein 1	BC096442|Gpbp1|73274|GC-rich promoter binding protein 1	BC076635|Gpbp1|73274|GC-rich promoter binding protein 1	AK163370|Gpbp1|73274|GC-rich promoter binding protein 1	AK135728|Gpbp1|73274|GC-rich promoter binding protein 1	AK145318|Gpbp1|73274|GC-rich promoter binding protein 1	AK163390|Gpbp1|73274|GC-rich promoter binding protein 1	NM_001122963|Gpbp1|73274|GC-rich promoter binding protein 1	NM_028487|Gpbp1|73274|GC-rich promoter binding protein 1	AK006608|Gpbp1|73274|GC-rich promoter binding protein 1
mm9_v1_chr4_-_140695648_140695720	0.289103	AGCUGCC	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr11_-_102742230_102742316	0.284054	AGCUGCC	U97079|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK172875|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK052242|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC052674|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	BC054778|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK150158|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165624|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK153473|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK154878|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	AK165151|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_001109995|Eftud2|20624|elongation factor Tu GTP binding domain containing 2	NM_011431|Eftud2|20624|elongation factor Tu GTP binding domain containing 2
mm9_v1_chr11_-_94103862_94104034	0.282697	AGCUGCC	AY308804|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	BC113144|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	NM_181819|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	AY100450|Wfikkn2|278507|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm9_v1_chr4_+_132925684_132925804	0.282041	AGCUGCC	AK150135|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	AK165501|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	NM_016981|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	BC052708|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1
mm9_v1_chr2_-_68309996_68310080	0.279686	AGCUGCC	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr9_-_45744036_45744140	0.278952	AGCUGCC	NM_011526|Tagln|21345|transgelin
mm9_v1_chr16_-_8738377_8738512	0.266797	AGCUGCC	AF548565|Usp7|252870|ubiquitin specific peptidase 7	NM_001003918|Usp7|252870|ubiquitin specific peptidase 7	BC046963|Usp7|252870|ubiquitin specific peptidase 7
mm9_v1_chr5_-_145900957_145900965	0.264548	AGCUGCC	AK147170|Pdap1|231887|PDGFA associated protein 1	NM_001033313|Pdap1|231887|PDGFA associated protein 1
mm9_v1_chr2_-_115890247_115890356	0.263982	AGCUGCC	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr3_-_107889507_107889627	0.262589	AGCUGCC	BC049119|Ampd2|109674|adenosine monophosphate deaminase 2	NM_028779|Ampd2|109674|adenosine monophosphate deaminase 2	AK169980|Ampd2|109674|adenosine monophosphate deaminase 2	AK004759|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr2_-_102026486_102026616	0.261304	AGCUGCC	AK032208|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	AK029683|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	NM_178886|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138178|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC145174|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138177|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3
mm9_v1_chr12_-_86217386_86217481	0.258005	AGCUGCC	BC119785|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AK052980|Ltbp2|16997|latent transforming growth factor beta binding protein 2	NM_013589|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AF004874|Ltbp2|16997|latent transforming growth factor beta binding protein 2
mm9_v1_chr6_-_57485419_57485488	0.256916	AGCUGCC	BC092238|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	NM_175523|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)	AK044610|Ppm1k|243382|protein phosphatase 1K (PP2C domain containing)
mm9_v1_chr7_-_87550315_87550316	0.255115	AGCUGCC	AK020294|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_001081454|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr10_+_96079634_96079769	0.252253	AGCUGCC	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr16_+_30599808_30599823	0.251903	AGCUGCC	AK083036|Fam43a|224093|family with sequence similarity 43, member A	NM_177632|Fam43a|224093|family with sequence similarity 43, member A	AK137950|Fam43a|224093|family with sequence similarity 43, member A	BC099947|Fam43a|224093|family with sequence similarity 43, member A
mm9_v1_chr18_+_82644510_82644514	0.246731	AGCUGCC	NM_001025245|Mbp|17196|myelin basic protein	NM_010777|Mbp|17196|myelin basic protein
mm9_v1_chr7_+_134985164_134985421	0.235288	AGCUGCC	AK145909|Stx4a|20909|syntaxin 4A (placental)	BC011491|Stx4a|20909|syntaxin 4A (placental)	NM_009294|Stx4a|20909|syntaxin 4A (placental)	AK161971|Stx4a|20909|syntaxin 4A (placental)	BC052023|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr6_-_99216494_99216530	0.235097	AGCUGCC	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr19_-_12870612_12870615	0.232784	AGCUGCC	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr5_-_137521896_137522032	0.222959	AGCUGCC	AK002225|Ap1s1|11769|adaptor protein complex AP-1, sigma 1	M62418|Ap1s1|11769|adaptor protein complex AP-1, sigma 1	NM_007457|Ap1s1|11769|adaptor protein complex AP-1, sigma 1	BC052692|Ap1s1|11769|adaptor protein complex AP-1, sigma 1
mm9_v1_chr17_-_48548973_48549148	0.221138	AGCUGCC	AK156487|Nfya|18044|nuclear transcription factor-Y alpha	BC029695|Nfya|18044|nuclear transcription factor-Y alpha	X55315|Nfya|18044|nuclear transcription factor-Y alpha	BC057099|Nfya|18044|nuclear transcription factor-Y alpha	AK137561|Nfya|18044|nuclear transcription factor-Y alpha	AK004729|Nfya|18044|nuclear transcription factor-Y alpha	AK143723|Nfya|18044|nuclear transcription factor-Y alpha	NM_001110832|Nfya|18044|nuclear transcription factor-Y alpha	NM_010913|Nfya|18044|nuclear transcription factor-Y alpha
mm9_v1_chr2_-_73052484_73052503	0.219623	AGCUGCC	AK013055|Ola1|67059|Obg-like ATPase 1	NM_025942|Ola1|67059|Obg-like ATPase 1	NM_030091|Ola1|67059|Obg-like ATPase 1
mm9_v1_chr15_-_96473193_96473343	0.217868	AGCUGCC	AK162612|Slc38a1|105727|solute carrier family 38, member 1	AK081724|Slc38a1|105727|solute carrier family 38, member 1	NM_001166458|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr4_-_123395382_123395431	0.211481	AGCUGCC	BC002163|BC002163|170658|NADH dehydrogenase Fe-S protein 5 pseudogene	AK152845|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	AK148505|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	NM_001030274|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5
mm9_v1_chr18_-_39646734_39646900	0.209201	AGCUGCC	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chrX_+_139115908_139116076	0.193008	AGCUGCC	AK166488|Tmem164|209497|transmembrane protein 164	BC056470|Tmem164|209497|transmembrane protein 164	NM_177592|Tmem164|209497|transmembrane protein 164
mm9_v1_chr7_+_100023762_100023966	0.186128	AGCUGCC	NM_028243|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011112|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK051677|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK166282|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011816|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC089575|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK054462|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC055022|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC026424|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)
mm9_v1_chr5_+_138070341_138070466	0.185502	AGCUGCC	NM_001168652|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	NM_146164|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK088331|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4	AK158025|Lrch4-sap25|100316903|Lrch4-Sap25 gene	BC012525|Lrch4|231798|leucine-rich repeats and calponin homology (CH) domain containing 4
mm9_v1_chr1_-_37776633_37776680	0.181892	AGCUGCC	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr7_-_134592467_134592671	0.181675	AGCUGCC	AK051667|Zfp689|71131|zinc finger protein 689	AK016830|Zfp689|71131|zinc finger protein 689	AK028417|Zfp689|71131|zinc finger protein 689	BC052084|Zfp689|71131|zinc finger protein 689	NM_175163|Zfp689|71131|zinc finger protein 689
mm9_v1_chr1_-_165243777_165243829	0.176784	AGCUGCC	NM_001025570|Prrx1|18933|paired related homeobox 1	NM_011127|Prrx1|18933|paired related homeobox 1	NM_175686|Prrx1|18933|paired related homeobox 1	U03873|Prrx1|18933|paired related homeobox 1	AK084387|Prrx1|18933|paired related homeobox 1	AK029347|Prrx1|18933|paired related homeobox 1
mm9_v1_chr9_+_57556346_57556409	0.174226	AGCUGCC	AK146804|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK140127|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK168118|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK090005|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	AK166286|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	NM_153799|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	BC031725|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)	BC033484|Edc3|353190|enhancer of mRNA decapping 3 homolog (S. cerevisiae)
mm9_v1_chr12_+_82732188_82732357	0.170537	AGCUGCC	AK172918|Ttc9|69480|tetratricopeptide repeat domain 9	BC028891|Ttc9|69480|tetratricopeptide repeat domain 9	AK133456|Ttc9|69480|tetratricopeptide repeat domain 9	NM_001033149|Ttc9|69480|tetratricopeptide repeat domain 9	BC139242|Ttc9|69480|tetratricopeptide repeat domain 9	BC139244|Ttc9|69480|tetratricopeptide repeat domain 9
mm9_v1_chr1_-_23929098_23929255	0.168599	AGCUGCC	BC006946|Smap1|98366|stromal membrane-associated protein 1	NM_028534|Smap1|98366|stromal membrane-associated protein 1	BC100537|Smap1|98366|stromal membrane-associated protein 1
mm9_v1_chr7_-_87547589_87547748	0.167634	AGCUGCC	L26489|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_011046|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr12_+_84973146_84973375	0.166057	AGCUGCC	NM_027349|Rbm25|67039|RNA binding motif protein 25	AK011403|Rbm25|67039|RNA binding motif protein 25	AK164367|Rbm25|67039|RNA binding motif protein 25	AK151910|Rbm25|67039|RNA binding motif protein 25	AK144341|AA645497|100499479|expressed sequence AA645497
mm9_v1_chr3_-_116126932_116126949	0.165337	AGCUGCC	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr4_-_153349097_153349234	0.161044	AGCUGCC	AB009377|Dffb|13368|DNA fragmentation factor, beta subunit	BC053052|Dffb|13368|DNA fragmentation factor, beta subunit	AK036094|Dffb|13368|DNA fragmentation factor, beta subunit	AK089267|Dffb|13368|DNA fragmentation factor, beta subunit	NM_007859|Dffb|13368|DNA fragmentation factor, beta subunit	AK077619|Dffb|13368|DNA fragmentation factor, beta subunit
mm9_v1_chr11_+_102622745_102622752	0.159742	AGCUGCC	AK157926|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_001110778|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_009613|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr11_-_101327431_101327547	0.159254	AGCUGCC	BC085504|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK159310|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	BC025496|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK170371|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	BC099678|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK154965|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK154178|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK159315|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK160891|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK034795|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK155342|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	NM_012037|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK145193|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr16_-_34514112_34514198	0.1571	AGCUGCC	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chrX_+_156146532_156146595	0.154607	AGCUGCC	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr6_+_127837606_127837652	0.153637	AGCUGCC	AK087294|Tspan11|68498|tetraspanin 11	NM_026743|Tspan11|68498|tetraspanin 11	AK090022|Tspan11|68498|tetraspanin 11	AK053788|Tspan11|68498|tetraspanin 11
mm9_v1_chr1_-_57028171_57028177	0.149494	AGCUGCC	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr2_-_73498303_73498483	0.14862	AGCUGCC	AB264771|Chn1|108699|chimerin (chimaerin) 1	BC025023|Chn1|108699|chimerin (chimaerin) 1	AK049943|Chn1|108699|chimerin (chimaerin) 1	AK147686|Chn1|108699|chimerin (chimaerin) 1	BC010825|Chn1|108699|chimerin (chimaerin) 1	BC024796|Chn1|108699|chimerin (chimaerin) 1	AK032630|Chn1|108699|chimerin (chimaerin) 1	AK075606|Chn1|108699|chimerin (chimaerin) 1	NM_001166604|Chn1|108699|chimerin (chimaerin) 1	NM_175752|Chn1|108699|chimerin (chimaerin) 1
mm9_v1_chr13_-_38085986_38086062	0.145585	AGCUGCC	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr4_+_140462254_140462341	0.145542	AGCUGCC	NM_008812|Padi2|18600|peptidyl arginine deiminase, type II	AK158382|Padi2|18600|peptidyl arginine deiminase, type II	AK171275|Padi2|18600|peptidyl arginine deiminase, type II	AK148156|Padi2|18600|peptidyl arginine deiminase, type II	AK154814|Padi2|18600|peptidyl arginine deiminase, type II	BC049947|Padi2|18600|peptidyl arginine deiminase, type II	BC040350|Padi2|18600|peptidyl arginine deiminase, type II	D16580|Padi2|18600|peptidyl arginine deiminase, type II
mm9_v1_chr1_-_194956399_194956457	0.144849	AGCUGCC	AK088756|Diexf|215193|digestive organ expansion factor homolog (zebrafish)	AK147251|Diexf|215193|digestive organ expansion factor homolog (zebrafish)	AK052355|Diexf|215193|digestive organ expansion factor homolog (zebrafish)	NM_145415|Diexf|215193|digestive organ expansion factor homolog (zebrafish)
mm9_v1_chr6_-_86619001_86619180	0.143212	AGCUGCC	CT010233|Mxd1|17119|MAX dimerization protein 1	L38926|Mxd1|17119|MAX dimerization protein 1	X83106|Mxd1|17119|MAX dimerization protein 1	BC034860|Mxd1|17119|MAX dimerization protein 1	U20614|Mxd1|17119|MAX dimerization protein 1	AK036504|Mxd1|17119|MAX dimerization protein 1	AK151882|Mxd1|17119|MAX dimerization protein 1	AK153303|Mxd1|17119|MAX dimerization protein 1	AK151114|Mxd1|17119|MAX dimerization protein 1	AK151014|Mxd1|17119|MAX dimerization protein 1	AK151305|Mxd1|17119|MAX dimerization protein 1	NM_010751|Mxd1|17119|MAX dimerization protein 1
mm9_v1_chr4_-_44181148_44181210	0.142207	AGCUGCC	AK044324|Rnf38|73469|ring finger protein 38	NM_001038993|Rnf38|73469|ring finger protein 38	AK147608|Rnf38|73469|ring finger protein 38
mm9_v1_chr13_+_94077988_94077988	0.138817	AGCUGCC	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr6_-_52141697_52141712	0.138045	AGCUGCC	AK076098|Hoxa4|15401|homeobox A4	BC107172|Hoxa4|15401|homeobox A4	NM_008265|Hoxa4|15401|homeobox A4
mm9_v1_chr16_-_20734583_20734583	0.137155	AGCUGCC	AK047512|Thpo|21832|thrombopoietin	NM_009379|Thpo|21832|thrombopoietin
mm9_v1_chr9_-_24956272_24956327	0.13485	AGCUGCC	AK135935|Herpud2|80517|HERPUD family member 2	NM_020586|Herpud2|80517|HERPUD family member 2	BC043693|Herpud2|80517|HERPUD family member 2
mm9_v1_chr17_-_46693110_46693149	0.134312	AGCUGCC	NM_020493|Srf|20807|serum response factor	BC051950|Srf|20807|serum response factor
mm9_v1_chr11_+_100277007_100277076	0.128773	AGCUGCC	NM_001163481|Fkbp10|14230|FK506 binding protein 10	NM_010221|Fkbp10|14230|FK506 binding protein 10	L07063|Fkbp10|14230|FK506 binding protein 10	AK144185|Fkbp10|14230|FK506 binding protein 10	BC029546|Fkbp10|14230|FK506 binding protein 10	AK019446|Fkbp10|14230|FK506 binding protein 10
mm9_v1_chr4_+_148892231_148892432	0.125715	AGCUGCC	AK036181|Ctnnbip1|67087|catenin beta interacting protein 1	NM_023465|Ctnnbip1|67087|catenin beta interacting protein 1	AK048258|Ctnnbip1|67087|catenin beta interacting protein 1	BC038253|Ctnnbip1|67087|catenin beta interacting protein 1	BC018436|Ctnnbip1|67087|catenin beta interacting protein 1	AB021261|Ctnnbip1|67087|catenin beta interacting protein 1
mm9_v1_chrX_+_147955201_147955234	0.124698	AGCUGCC	AK040969|Phf8|320595|PHD finger protein 8	NM_001113354|Phf8|320595|PHD finger protein 8	NM_177201|Phf8|320595|PHD finger protein 8
mm9_v1_chr9_+_44412931_44412987	0.124518	AGCUGCC	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr16_+_58728101_58728177	0.124237	AGCUGCC	AK152121|Cldnd1|224250|claudin domain containing 1	AK003808|Cldnd1|224250|claudin domain containing 1	AK152722|Cldnd1|224250|claudin domain containing 1	AK009743|Cldnd1|224250|claudin domain containing 1	AK009432|Cldnd1|224250|claudin domain containing 1	NM_171826|Cldnd1|224250|claudin domain containing 1
mm9_v1_chr14_+_31638767_31638861	0.12331	AGCUGCC	AK007740|Tmem110|69179|transmembrane protein 110	NM_028839|Tmem110|69179|transmembrane protein 110	AK009341|Tmem110|69179|transmembrane protein 110	AK076341|Tmem110|69179|transmembrane protein 110	AK149088|Tmem110|69179|transmembrane protein 110	AK155257|Tmem110|69179|transmembrane protein 110
mm9_v1_chr17_+_29227908_29227961	0.119816	AGCUGCC	NM_001111099|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr1_-_170362388_170362504	0.119392	AGCUGCC	NM_008783|Pbx1|18514|pre B-cell leukemia transcription factor 1	NM_183355|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr11_-_78325602_78325669	0.119135	AGCUGCC	AK156856|Tmem199|195040|transmembrane protein 199	AK158039|Tmem199|195040|transmembrane protein 199	BC050977|Tmem199|195040|transmembrane protein 199	BC147070|Tmem199|195040|transmembrane protein 199	BC147071|Tmem199|195040|transmembrane protein 199	NM_199199|Tmem199|195040|transmembrane protein 199
mm9_v1_chrX_+_156278399_156278494	0.117713	AGCUGCC	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr3_+_84668066_84668066	0.115149	AGCUGCC	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr11_+_72861327_72861399	0.11484	AGCUGCC	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr11_-_118109789_118109956	0.112724	AGCUGCC	BC057974|Cyth1|19157|cytohesin 1	AK078502|Cyth1|19157|cytohesin 1	AB013464|Cyth1|19157|cytohesin 1	AK220302|Cyth1|19157|cytohesin 1	AK172296|Cyth1|19157|cytohesin 1	AB035538|Cyth1|19157|cytohesin 1	AY126516|Cyth1|19157|cytohesin 1	NM_001112699|Cyth1|19157|cytohesin 1	NM_011180|Cyth1|19157|cytohesin 1
mm9_v1_chr19_+_44637331_44637363	0.112105	AGCUGCC	AK154774|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	BC130013|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	NM_176958|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK084960|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK043636|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK141867|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor
mm9_v1_chr15_+_81416643_81416789	0.111403	AGCUGCC	NM_177821|Ep300|328572|E1A binding protein p300	AK042627|Ep300|328572|E1A binding protein p300	BC144976|Ep300|328572|E1A binding protein p300	BC150681|Ep300|328572|E1A binding protein p300
mm9_v1_chrX_+_143397055_143397188	0.109864	AGCUGCC	AK034512|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK043320|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK079648|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK139392|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	NM_008312|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	AK086348|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	BC098327|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	M63685|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C	X72230|Htr2c|15560|5-hydroxytryptamine (serotonin) receptor 2C
mm9_v1_chr8_+_23970006_23970020	0.108467	AGCUGCC	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr13_-_17896909_17896930	0.107485	AGCUGCC	AK173265|Cdk13|69562|cyclin-dependent kinase 13	NM_001081058|Cdk13|69562|cyclin-dependent kinase 13	NM_027118|Cdk13|69562|cyclin-dependent kinase 13
mm9_v1_chr5_+_18732863_18732863	0.106817	AGCUGCC	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr3_+_99689339_99689354	0.106289	AGCUGCC	AK029691|Spag17|74362|sperm associated antigen 17	NM_028892|Spag17|74362|sperm associated antigen 17	AK029947|Spag17|74362|sperm associated antigen 17	AK016477|Spag17|74362|sperm associated antigen 17	AY555275|Spag17|74362|sperm associated antigen 17	AY792594|Spag17|74362|sperm associated antigen 17
mm9_v1_chr14_+_119337150_119337225	0.104287	AGCUGCC	NM_008929|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	AK146097|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	AK148270|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	BC013766|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	U28423|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3
mm9_v1_chr6_-_3713622_3713622	0.102904	AGCUGCC	AK133983|Calcr|12311|calcitonin receptor	NM_001042725|Calcr|12311|calcitonin receptor
mm9_v1_chr15_-_102347434_102347445	0.101551	AGCUGCC	NM_001163643|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12	NM_009582|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12
mm9_v1_chr6_+_114232618_114232629	0.101263	AGCUGCC	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr7_+_134890288_134890288	0.0998803	AGCUGCC	BC059812|Fbxl19|233902|F-box and leucine-rich repeat protein 19	NM_172748|Fbxl19|233902|F-box and leucine-rich repeat protein 19
mm9_v1_chrX_-_160396490_160396625	0.0996666	AGCUGCC	BC083160|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC099617|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	BC065693|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	D45205|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK030296|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	AK045504|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_009453|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	NM_178794|Zrsr2|22184|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2
mm9_v1_chr11_+_95198329_95198359	0.0942527	AGCUGCC	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr2_+_119625249_119625324	0.0896734	AGCUGCC	BC066058|Tyro3|22174|TYRO3 protein tyrosine kinase 3	NM_019392|Tyro3|22174|TYRO3 protein tyrosine kinase 3	BC082325|Tyro3|22174|TYRO3 protein tyrosine kinase 3	X78103|Tyro3|22174|TYRO3 protein tyrosine kinase 3	U18933|Tyro3|22174|TYRO3 protein tyrosine kinase 3
mm9_v1_chr16_-_17911283_17911450	0.0892927	AGCUGCC	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr8_+_28196312_28196323	0.0892186	AGCUGCC	AF378759|Gpr124|78560|G protein-coupled receptor 124	NM_054044|Gpr124|78560|G protein-coupled receptor 124	BC138451|Gpr124|78560|G protein-coupled receptor 124	BC138452|Gpr124|78560|G protein-coupled receptor 124
mm9_v1_chr18_-_67884185_67884280	0.0892083	AGCUGCC	S52655|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK076072|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	M80739|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	M81477|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK132013|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK014528|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	BC008269|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	NM_001127177|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	NM_008977|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2
mm9_v1_chr7_-_30290470_30290595	0.0876744	AGCUGCC	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chr2_+_112219335_112219462	0.0873012	AGCUGCC	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chr9_+_66006025_66006053	0.0866447	AGCUGCC	NM_010019|Dapk2|13143|death-associated protein kinase 2	AK158082|Dapk2|13143|death-associated protein kinase 2	AB018002|Dapk2|13143|death-associated protein kinase 2
mm9_v1_chr4_-_149072755_149072816	0.0863299	AGCUGCC	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chrX_-_147531030_147531085	0.0847651	AGCUGCC	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr4_-_46151281_46151362	0.0845235	AGCUGCC	BC057893|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK165359|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK155456|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK028258|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	NM_173033|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK089417|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
mm9_v1_chr2_-_62249934_62250287	0.0829215	AGCUGCC	X58384|Dpp4|13482|dipeptidylpeptidase 4	AK040409|Dpp4|13482|dipeptidylpeptidase 4	BC022183|Dpp4|13482|dipeptidylpeptidase 4	AK163085|Dpp4|13482|dipeptidylpeptidase 4	NM_001159543|Dpp4|13482|dipeptidylpeptidase 4	NM_010074|Dpp4|13482|dipeptidylpeptidase 4
mm9_v1_chr11_-_100389196_100389291	0.0828916	AGCUGCC	AK132755|Acly|104112|ATP citrate lyase	BC056378|Acly|104112|ATP citrate lyase	NM_134037|Acly|104112|ATP citrate lyase	AK149660|Acly|104112|ATP citrate lyase
mm9_v1_chr4_-_86873866_86873867	0.0804103	AGCUGCC	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr1_+_161974503_161974570	0.0802005	AGCUGCC	NM_001162896|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK132698|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK035814|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK015875|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene
mm9_v1_chr17_-_29853929_29853974	0.0790057	AGCUGCC	AK049389|1110021J02Rik|68597|RIKEN cDNA 1110021J02 gene	AK085526|1110021J02Rik|68597|RIKEN cDNA 1110021J02 gene	BC022730|1110021J02Rik|68597|RIKEN cDNA 1110021J02 gene	AK003900|1110021J02Rik|68597|RIKEN cDNA 1110021J02 gene	NM_001163741|1110021J02Rik|68597|RIKEN cDNA 1110021J02 gene	NM_026782|1110021J02Rik|68597|RIKEN cDNA 1110021J02 gene
mm9_v1_chr2_+_32426348_32426407	0.078185	AGCUGCC	BC008256|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	NM_010073|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK002468|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK086634|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AK004241|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2	AB013360|Dpm2|13481|dolichol-phosphate (beta-D) mannosyltransferase 2
mm9_v1_chr5_+_31191349_31191378	0.0758524	AGCUGCC	BC057349|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867034|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867035|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867036|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867037|Agbl5|231093|ATP/GTP binding protein-like 5	DQ867038|Agbl5|231093|ATP/GTP binding protein-like 5	NM_001048192|Agbl5|231093|ATP/GTP binding protein-like 5
mm9_v1_chr8_+_15011024_15011024	0.0725456	AGCUGCC	AK013531|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	NM_029116|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr3_-_132613190_132613254	0.0709253	AGCUGCC	AB059656|Npnt|114249|nephronectin	NM_001029836|Npnt|114249|nephronectin	NM_033525|Npnt|114249|nephronectin
mm9_v1_chr17_+_47748530_47748580	0.0688602	AGCUGCC	AK041624|Med20|56771|mediator complex subunit 20	AK019130|Med20|56771|mediator complex subunit 20	AK043396|Med20|56771|mediator complex subunit 20	AK146345|Med20|56771|mediator complex subunit 20	NM_020048|Med20|56771|mediator complex subunit 20	AK031504|Med20|56771|mediator complex subunit 20	BC060122|Med20|56771|mediator complex subunit 20	AK141369|Med20|56771|mediator complex subunit 20	AJ245617|Med20|56771|mediator complex subunit 20
mm9_v1_chr5_-_120953567_120953653	0.0650803	AGCUGCC	AK030234|Plbd2|71772|phospholipase B domain containing 2	BC026395|Plbd2|71772|phospholipase B domain containing 2	BC038605|Plbd2|71772|phospholipase B domain containing 2	AF217003|Plbd2|71772|phospholipase B domain containing 2	BC060095|Plbd2|71772|phospholipase B domain containing 2	AK164220|Plbd2|71772|phospholipase B domain containing 2	AK170631|Plbd2|71772|phospholipase B domain containing 2	BC048826|Plbd2|71772|phospholipase B domain containing 2	AK043608|Plbd2|71772|phospholipase B domain containing 2	AK046937|Plbd2|71772|phospholipase B domain containing 2	AK150201|Plbd2|71772|phospholipase B domain containing 2	AK170387|Plbd2|71772|phospholipase B domain containing 2	AK032930|Plbd2|71772|phospholipase B domain containing 2	AK042089|Plbd2|71772|phospholipase B domain containing 2	AK029813|Plbd2|71772|phospholipase B domain containing 2	NM_023625|Plbd2|71772|phospholipase B domain containing 2	AK004973|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr11_-_97605846_97606123	0.0649136	AGCUGCC	AY050219|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK170392|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK037013|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK171497|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK089414|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	BC047282|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	NM_054051|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK146559|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm9_v1_chr19_+_42007957_42008102	0.0643726	AGCUGCC	NM_023740|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK151505|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK168042|Zdhhc16|74168|zinc finger, DHHC domain containing 16	BC010835|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AF176814|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK183781|Zdhhc16|74168|zinc finger, DHHC domain containing 16
mm9_v1_chr3_-_29912113_29912128	0.0629875	AGCUGCC	AK085548|Mecom|14013|MDS1 and EVI1 complex locus	NM_007963|Mecom|14013|MDS1 and EVI1 complex locus
mm9_v1_chr15_-_8660729_8660806	0.062659	AGCUGCC	BC058711|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	NM_148938|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr4_+_128867038_128867085	0.0607985	AGCUGCC	NM_134151|Yars|107271|tyrosyl-tRNA synthetase
mm9_v1_chr16_-_89818596_89818596	0.0596477	AGCUGCC	AK136856|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145887|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr1_+_192922288_192922292	0.0592739	AGCUGCC	AK020278|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117083|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	BC117085|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3	NM_030060|Batf3|381319|basic leucine zipper transcription factor, ATF-like 3
mm9_v1_chr7_+_107641853_107641862	0.0488664	AGCUGCC	NM_011671|Ucp2|22228|uncoupling protein 2 (mitochondrial, proton carrier)
mm9_v1_chr7_+_63097396_63097595	0.0478502	AGCUGCC	AK044651|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	NM_001164661|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	NM_001164662|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	NM_011370|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	BC052713|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr2_-_118982714_118982769	0.0438485	AGCUGCC	BC061186|Fam82a2|67809|family with sequence similarity 82, member A2	AK171770|Fam82a2|67809|family with sequence similarity 82, member A2	NM_001033136|Fam82a2|67809|family with sequence similarity 82, member A2
mm9_v1_chr6_-_129422702_129422806	0.0436289	AGCUGCC	AY534909|Clec7a|56644|C-type lectin domain family 7, member a	BC027742|Clec7a|56644|C-type lectin domain family 7, member a	AF262985|Clec7a|56644|C-type lectin domain family 7, member a	NM_020008|Clec7a|56644|C-type lectin domain family 7, member a
mm9_v1_chr5_+_35104373_35104397	0.0433391	AGCUGCC	AK042204|Htt|15194|huntingtin	NM_010414|Htt|15194|huntingtin
mm9_v1_chr2_-_52601140_52601264	0.0426841	AGCUGCC	AK214650|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK004604|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	NM_019667|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AB012611|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK044230|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK159699|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK017668|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK078244|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK168729|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	BC013818|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	DQ141211|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK035789|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm9_v1_chr7_-_112788821_112788929	0.039209	AGCUGCC	BC028310|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC013794|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC022942|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK009100|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK154772|Arfip2|76932|ADP-ribosylation factor interacting protein 2	NM_029802|Arfip2|76932|ADP-ribosylation factor interacting protein 2
mm9_v1_chr15_+_81633102_81633182	0.0389175	AGCUGCC	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr15_-_96472392_96472392	0.0376169	AGCUGCC	AK034130|Slc38a1|105727|solute carrier family 38, member 1	NM_134086|Slc38a1|105727|solute carrier family 38, member 1
mm9_v1_chr7_+_94732677_94732677	0.0265782	AGCUGCC	NM_001081414|Grm5|108071|glutamate receptor, metabotropic 5	NM_001143834|Grm5|108071|glutamate receptor, metabotropic 5
mm9_v1_chr10_-_120913138_120913382	0.0265407	AGCUGCC	AK167627|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AF332864|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC011511|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	NM_138956|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC071204|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AK155495|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC055023|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3
mm9_v1_chr5_-_68238654_68238670	0.0265104	AGCUGCC	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr15_+_99532698_99532771	0.0263992	AGCUGCC	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr4_+_13711928_13711928	0.0244219	AGCUGCC	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chrX_-_106029678_106029693	0.0219717	AGCUGCC	AK050539|Brwd3|382236|bromodomain and WD repeat domain containing 3	AK163354|Brwd3|382236|bromodomain and WD repeat domain containing 3	NM_001081477|Brwd3|382236|bromodomain and WD repeat domain containing 3
mm9_v1_chr14_-_70751120_70751274	0.0217815	AGCUGCC	AK158096|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	AB177995|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	BC021530|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	NM_001135151|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14	NM_144808|Slc39a14|213053|solute carrier family 39 (zinc transporter), member 14
mm9_v1_chr4_+_135411923_135412023	0.020826	AGCUGCC	NM_001080387|Srsf10|14105|serine/arginine-rich splicing factor 10	NM_010178|Srsf10|14105|serine/arginine-rich splicing factor 10	AK134076|Srsf10|14105|serine/arginine-rich splicing factor 10	AK134289|Srsf10|14105|serine/arginine-rich splicing factor 10
mm9_v1_chr11_+_3931731_3931881	0.0191926	AGCUGCC	BC026948|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	NM_146013|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	AK028954|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)
mm9_v1_chr10_+_84380305_84380360	0.0187102	AGCUGCC	BC051080|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	NM_183172|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm9_v1_chr10_+_52137324_52137453	0.0186992	AGCUGCC	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr11_+_72503487_72503520	0.0183089	AGCUGCC	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr6_-_136783899_136783972	0.013552	AGCUGCC	AK047766|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene	AK045581|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene	NM_001039558|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene	AK078719|C030030A07Rik|654818|RIKEN cDNA C030030A07 gene
mm9_v1_chr16_-_56029770_56029852	0.0124237	AGCUGCC	AK150595|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK145195|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK152279|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC106192|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC061235|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK159201|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC023320|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK168723|Pcnp|76302|PEST proteolytic signal containing nuclear protein	AK166071|Pcnp|76302|PEST proteolytic signal containing nuclear protein	NM_001024622|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132588|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC132590|Pcnp|76302|PEST proteolytic signal containing nuclear protein	BC145194|Pcnp|76302|PEST proteolytic signal containing nuclear protein
mm9_v1_chr2_+_121782185_121782265	0.011689	AGCUGCC	AK033382|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	NM_212450|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK169248|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK044805|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK053513|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC066219|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK030085|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK041422|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK049463|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK160431|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC052660|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm9_v1_chrX_-_141921588_141921636	0.0111048	AGCUGCC	AF461135|Amot|27494|angiomotin	NM_153319|Amot|27494|angiomotin	BC057638|Amot|27494|angiomotin
mm9_v1_chr1_-_134539434_134539434	0.0104842	AGCUGCC	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr17_-_32421025_32421067	0.00778097	AGCUGCC	BC082782|Brd4|57261|bromodomain containing 4	AK147545|Brd4|57261|bromodomain containing 4	BC138835|Brd4|57261|bromodomain containing 4	BC138834|Brd4|57261|bromodomain containing 4	AF461395|Brd4|57261|bromodomain containing 4	AF461396|Brd4|57261|bromodomain containing 4	NM_020508|Brd4|57261|bromodomain containing 4	NM_198094|Brd4|57261|bromodomain containing 4
mm9_v1_chr3_-_82707880_82707898	0.00756462	AGCUGCC	AF255061|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	AK004953|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	NM_023624|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
mm9_v1_chr6_-_71582562_71582698	0.00692031	AGCUGCC	BC059264|Kdm3a|104263|lysine (K)-specific demethylase 3A	AK144825|Kdm3a|104263|lysine (K)-specific demethylase 3A	NM_173001|Kdm3a|104263|lysine (K)-specific demethylase 3A
mm9_v1_chr5_-_141124884_141125029	0.00636019	AGCUGCC	AK052340|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC059083|Ttyh3|78339|tweety homolog 3 (Drosophila)	BC062917|Ttyh3|78339|tweety homolog 3 (Drosophila)	NM_175274|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr7_-_106632113_106632218	0.00603863	AGCUGCC	AK206775|Rps3|27050|ribosomal protein S3	X76772|Rps3|27050|ribosomal protein S3	BC010721|Rps3|27050|ribosomal protein S3	AK165174|Rps3|27050|ribosomal protein S3	AK167266|Rps3|27050|ribosomal protein S3	AK168845|Rps3|27050|ribosomal protein S3	AK150479|Rps3|27050|ribosomal protein S3	AK003181|Rps3|27050|ribosomal protein S3	AK011655|Rps3|27050|ribosomal protein S3	AK146796|Rps3|27050|ribosomal protein S3	AK012234|Rps3|27050|ribosomal protein S3	AK012314|Rps3|27050|ribosomal protein S3	AK012538|Rps3|27050|ribosomal protein S3	AK088038|Rps3|27050|ribosomal protein S3	AK143603|Rps3|27050|ribosomal protein S3	AK148030|Rps3|27050|ribosomal protein S3	AK160526|Rps3|27050|ribosomal protein S3	AK167210|Rps3|27050|ribosomal protein S3	AK010579|Rps3|27050|ribosomal protein S3	AK010678|Rps3|27050|ribosomal protein S3	AK051243|Rps3|27050|ribosomal protein S3	AK146165|Rps3|27050|ribosomal protein S3	AK159508|Rps3|27050|ribosomal protein S3	AK164077|Rps3|27050|ribosomal protein S3	AK166750|Rps3|27050|ribosomal protein S3	NM_012052|Rps3|27050|ribosomal protein S3
mm9_v1_chr14_+_14845004_14845173	0.00513184	AGCUGCC	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr2_-_65962685_65962849	0.00274917	AGCUGCC	U70538|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC043331|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC003765|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK007135|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK135489|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK019995|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	NM_015736|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
mm9_v1_chr9_-_71011053_71011095	0.00220441	AGCUGCC	BC024105|Aqp9|64008|aquaporin 9	AK050042|Aqp9|64008|aquaporin 9	NM_022026|Aqp9|64008|aquaporin 9
mm9_v1_chr13_-_25029458_25029547	0.00217615	AGCUGCC	AK051603|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	BC138703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK159485|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK166313|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK144030|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK052703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	NM_172532|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1
mm9_v1_chr16_+_95923988_95924060	0.00175199	AGCUGCC	NM_011809|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK038348|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chrX_-_138740740_138740752	0.00155169	AGCUGCC	AJ131398|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	NM_021487|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm9_v1_chr11_-_65601774_65601862	0.000548714	AGCUGCC	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
