mm9_v1_chr13_+_56710896_56710979	2.95971	AGCUUAU	AK135536|Tgfbi|21810|transforming growth factor, beta induced	AK142323|Tgfbi|21810|transforming growth factor, beta induced	AK169912|Tgfbi|21810|transforming growth factor, beta induced	AK150969|Tgfbi|21810|transforming growth factor, beta induced	AK152365|Tgfbi|21810|transforming growth factor, beta induced	AK084431|Tgfbi|21810|transforming growth factor, beta induced	AK150449|Tgfbi|21810|transforming growth factor, beta induced	AK150833|Tgfbi|21810|transforming growth factor, beta induced	AK152662|Tgfbi|21810|transforming growth factor, beta induced	AK164373|Tgfbi|21810|transforming growth factor, beta induced	AK151680|Tgfbi|21810|transforming growth factor, beta induced	AK155828|Tgfbi|21810|transforming growth factor, beta induced	AK159711|Tgfbi|21810|transforming growth factor, beta induced	AK170495|Tgfbi|21810|transforming growth factor, beta induced	AK155572|Tgfbi|21810|transforming growth factor, beta induced	NM_009369|Tgfbi|21810|transforming growth factor, beta induced	L19932|Tgfbi|21810|transforming growth factor, beta induced	BC129900|Tgfbi|21810|transforming growth factor, beta induced	BC129901|Tgfbi|21810|transforming growth factor, beta induced
mm9_v1_chr5_-_38215607_38215829	1.84525	AGCUUAU	AF308572|Msx1|17701|homeobox, msh-like 1	X14759|Msx1|17701|homeobox, msh-like 1	X59251|Msx1|17701|homeobox, msh-like 1	BC016426|Msx1|17701|homeobox, msh-like 1	AK077524|Msx1|17701|homeobox, msh-like 1	AK145726|Msx1|17701|homeobox, msh-like 1	AK078600|Msx1|17701|homeobox, msh-like 1	NM_010835|Msx1|17701|homeobox, msh-like 1
mm9_v1_chr18_+_56591785_56591811	1.73327	AGCUUAU	NM_026240|Gramd3|107022|GRAM domain containing 3	AK018691|Gramd3|107022|GRAM domain containing 3	AK164050|Gramd3|107022|GRAM domain containing 3
mm9_v1_chr13_-_64254466_64254592	1.37071	AGCUUAU	BC119531|Zfp367|238673|zinc finger protein 367	BC119532|Zfp367|238673|zinc finger protein 367	AK033288|Zfp367|238673|zinc finger protein 367	NM_175494|Zfp367|238673|zinc finger protein 367	AK041331|Zfp367|238673|zinc finger protein 367	AK041361|Zfp367|238673|zinc finger protein 367	AK077686|Zfp367|238673|zinc finger protein 367
mm9_v1_chr9_-_8004559_8004652	1.30642	AGCUUAU	BC094313|Yap1|22601|yes-associated protein 1	BC014733|Yap1|22601|yes-associated protein 1	X80508|Yap1|22601|yes-associated protein 1	AK157234|Yap1|22601|yes-associated protein 1	NM_001171147|Yap1|22601|yes-associated protein 1	NM_009534|Yap1|22601|yes-associated protein 1
mm9_v1_chrX_+_39503858_39503966	1.25344	AGCUUAU	AK146718|Stag2|20843|stromal antigen 2	AK168899|Stag2|20843|stromal antigen 2	NM_021465|Stag2|20843|stromal antigen 2
mm9_v1_chr4_+_97444312_97444317	1.23464	AGCUUAU	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr2_-_136942066_136942255	1.19572	AGCUUAU	NM_013822|Jag1|16449|jagged 1	AK137092|Jag1|16449|jagged 1	AF171092|Jag1|16449|jagged 1
mm9_v1_chr13_-_112599181_112599204	1.15992	AGCUUAU	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr6_+_88148657_88148753	0.993366	AGCUUAU	AK154981|Gata2|14461|GATA binding protein 2	NM_008090|Gata2|14461|GATA binding protein 2	AK004551|Gata2|14461|GATA binding protein 2	AK154792|Gata2|14461|GATA binding protein 2	BC107009|Gata2|14461|GATA binding protein 2
mm9_v1_chr5_+_53981453_53981812	0.907772	AGCUUAU	NM_009035|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	S63463|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK152746|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	X17459|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK028363|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK132145|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	AK139087|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region	NM_001080927|Rbpj|19664|recombination signal binding protein for immunoglobulin kappa J region
mm9_v1_chr3_+_37538808_37538883	0.906956	AGCUUAU	BC053428|Spry1|24063|sprouty homolog 1 (Drosophila)	NM_011896|Spry1|24063|sprouty homolog 1 (Drosophila)	AK014578|Spry1|24063|sprouty homolog 1 (Drosophila)	AK140405|Spry1|24063|sprouty homolog 1 (Drosophila)	BC039139|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr2_+_3630729_3630774	0.879384	AGCUUAU	AK032875|Fam107b|66540|family with sequence similarity 107, member B	NM_025626|Fam107b|66540|family with sequence similarity 107, member B	AK013932|Fam107b|66540|family with sequence similarity 107, member B	AK168759|Fam107b|66540|family with sequence similarity 107, member B	BC021353|Fam107b|66540|family with sequence similarity 107, member B
mm9_v1_chr18_+_75527015_75527182	0.864295	AGCUUAU	NM_001042660|Smad7|17131|MAD homolog 7 (Drosophila)	AK013237|Smad7|17131|MAD homolog 7 (Drosophila)	AJ000550|Smad7|17131|MAD homolog 7 (Drosophila)
mm9_v1_chr16_+_4594703_4594731	0.831938	AGCUUAU	NM_031184|Glis2|83396|GLIS family zinc finger 2
mm9_v1_chr15_+_80629020_80629144	0.812387	AGCUUAU	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr6_-_39156706_39156787	0.785458	AGCUUAU	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr3_+_60305108_60305212	0.769744	AGCUUAU	AK162039|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK149405|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AB093240|Mbnl1|56758|muscleblind-like 1 (Drosophila)	NM_020007|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK088871|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK153848|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC060031|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC096600|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr11_+_60745534_60745749	0.743973	AGCUUAU	AK008141|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK166255|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK167442|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK011002|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK053378|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK150067|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK166507|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK167209|Map2k3|26397|mitogen-activated protein kinase kinase 3	NM_008928|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK159379|Map2k3|26397|mitogen-activated protein kinase kinase 3	BC007467|Map2k3|26397|mitogen-activated protein kinase kinase 3	D87115|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK168710|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK179609|Map2k3|26397|mitogen-activated protein kinase kinase 3	AK181928|Map2k3|26397|mitogen-activated protein kinase kinase 3
mm9_v1_chr15_+_80541675_80541764	0.733216	AGCUUAU	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr14_+_67254087_67254180	0.711893	AGCUUAU	AK085653|Adra1a|11549|adrenergic receptor, alpha 1a	AK079597|Adra1a|11549|adrenergic receptor, alpha 1a	NM_013461|Adra1a|11549|adrenergic receptor, alpha 1a	AK050183|Adra1a|11549|adrenergic receptor, alpha 1a	AK042759|Adra1a|11549|adrenergic receptor, alpha 1a	AK138919|Adra1a|11549|adrenergic receptor, alpha 1a
mm9_v1_chr1_-_135975681_135975731	0.697066	AGCUUAU	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr11_+_59475986_59476013	0.696332	AGCUUAU	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr5_-_103640272_103640352	0.684552	AGCUUAU	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr5_-_64360058_64360140	0.675764	AGCUUAU	AK133845|Rell1|100532|RELT-like 1	AK159944|Rell1|100532|RELT-like 1	AK161061|Rell1|100532|RELT-like 1	BC031198|Rell1|100532|RELT-like 1	BC066137|Rell1|100532|RELT-like 1	BC066160|Rell1|100532|RELT-like 1	AK140108|Rell1|100532|RELT-like 1	NM_145923|Rell1|100532|RELT-like 1
mm9_v1_chr15_-_9070066_9070213	0.665494	AGCUUAU	AF083215|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK204645|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC003468|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC092236|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK167677|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK037002|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK044212|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK166034|Skp2|27401|S-phase kinase-associated protein 2 (p45)	AK032979|Skp2|27401|S-phase kinase-associated protein 2 (p45)	BC098371|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_013787|Skp2|27401|S-phase kinase-associated protein 2 (p45)	NM_145468|Skp2|27401|S-phase kinase-associated protein 2 (p45)
mm9_v1_chr6_-_144157971_144158077	0.652773	AGCUUAU	BC110478|Sox5|20678|SRY-box containing gene 5	AK132307|Sox5|20678|SRY-box containing gene 5	AB006330|Sox5|20678|SRY-box containing gene 5	AJ010604|Sox5|20678|SRY-box containing gene 5	NM_001113559|Sox5|20678|SRY-box containing gene 5	NM_011444|Sox5|20678|SRY-box containing gene 5
mm9_v1_chr4_-_19636000_19636212	0.624558	AGCUUAU	AK137588|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	BC026829|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK168567|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK032232|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK042432|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	NM_177327|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr10_+_53316720_53316974	0.573602	AGCUUAU	AK010210|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	NM_025541|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK012376|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK031513|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK088618|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK007804|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	BC027628|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm9_v1_chr2_-_148233853_148233923	0.571526	AGCUUAU	AK044928|Thbd|21824|thrombomodulin	AK089479|Thbd|21824|thrombomodulin	NM_009378|Thbd|21824|thrombomodulin
mm9_v1_chr2_-_117168600_117168658	0.570786	AGCUUAU	BC057120|Rasgrp1|19419|RAS guanyl releasing protein 1	BC057341|Rasgrp1|19419|RAS guanyl releasing protein 1	NM_011246|Rasgrp1|19419|RAS guanyl releasing protein 1	AK134005|Rasgrp1|19419|RAS guanyl releasing protein 1	AK013548|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr9_-_42913797_42913909	0.558341	AGCUUAU	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr9_+_109778051_109778082	0.550229	AGCUUAU	AK077991|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)	NM_007658|Cdc25a|12530|cell division cycle 25 homolog A (S. pombe)
mm9_v1_chr15_+_102300972_102301062	0.525265	AGCUUAU	NM_001103165|Pcbp2|18521|poly(rC) binding protein 2	NM_001103166|Pcbp2|18521|poly(rC) binding protein 2	NM_001174073|Pcbp2|18521|poly(rC) binding protein 2	NM_011042|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr5_-_135870365_135870452	0.516703	AGCUUAU	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr11_+_60230646_60230770	0.515971	AGCUUAU	AK017120|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	NM_025757|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AK039435|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr9_-_116084395_116084480	0.504967	AGCUUAU	AK046561|Tgfbr2|21813|transforming growth factor, beta receptor II	AK159327|Tgfbr2|21813|transforming growth factor, beta receptor II	AK148167|Tgfbr2|21813|transforming growth factor, beta receptor II	AK053793|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_009371|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_029575|Tgfbr2|21813|transforming growth factor, beta receptor II
mm9_v1_chr13_-_102462584_102462601	0.473243	AGCUUAU	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr8_-_72877137_72877227	0.448996	AGCUUAU	AK148196|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	BC056442|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	NM_001122829|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	NM_030680|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	AF182947|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)
mm9_v1_chr14_+_31832323_31832337	0.427165	AGCUUAU	AK165182|Pbrm1|66923|polybromo 1	NM_001081251|Pbrm1|66923|polybromo 1
mm9_v1_chr7_+_73007017_73007098	0.408801	AGCUUAU	NM_011048|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6	D50060|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6
mm9_v1_chr18_+_84257471_84257589	0.405946	AGCUUAU	AK083082|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK047559|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK081988|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116427|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116428|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	NM_146090|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2
mm9_v1_chr14_+_64562509_64562560	0.405447	AGCUUAU	AK155670|Sox7|20680|SRY-box containing gene 7	AK156497|Sox7|20680|SRY-box containing gene 7	AK009704|Sox7|20680|SRY-box containing gene 7	AB023419|Sox7|20680|SRY-box containing gene 7	NM_011446|Sox7|20680|SRY-box containing gene 7	BC131936|Sox7|20680|SRY-box containing gene 7	BC145925|Sox7|20680|SRY-box containing gene 7
mm9_v1_chr1_-_184271729_184271762	0.392657	AGCUUAU	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chr15_-_73015345_73015397	0.38639	AGCUUAU	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr15_+_100701068_100701116	0.383348	AGCUUAU	NM_001077499|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AK158609|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr16_-_89960987_89961071	0.373767	AGCUUAU	AK017465|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_009384|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	U05245|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr3_+_135101664_135101764	0.372313	AGCUUAU	AK153111|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152231|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153410|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167801|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK151594|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK032885|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167077|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK090099|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC098220|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC024351|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK004001|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK049906|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	NM_025356|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167650|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159546|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152541|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159963|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC057941|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK088448|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr11_-_20149322_20149457	0.367781	AGCUUAU	AK205251|Cep68|216543|centrosomal protein 68	AK172975|Cep68|216543|centrosomal protein 68	AK146669|Cep68|216543|centrosomal protein 68	AK145286|Cep68|216543|centrosomal protein 68	AK172304|Cep68|216543|centrosomal protein 68	AK169934|Cep68|216543|centrosomal protein 68	AK031622|Cep68|216543|centrosomal protein 68	BC027174|Cep68|216543|centrosomal protein 68	AK140820|Cep68|216543|centrosomal protein 68	NM_172260|Cep68|216543|centrosomal protein 68	AK162594|Cep68|216543|centrosomal protein 68
mm9_v1_chr4_-_133523750_133523927	0.355857	AGCUUAU	X12944|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC084680|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090837|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC092060|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC083085|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC090836|Hmgn2|15331|high mobility group nucleosomal binding domain 2	BC103792|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK078413|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK002374|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK151383|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK152857|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK153881|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK169050|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146285|Hmgn2|15331|high mobility group nucleosomal binding domain 2	AK146999|Hmgn2|15331|high mobility group nucleosomal binding domain 2	NM_016957|Hmgn2|15331|high mobility group nucleosomal binding domain 2
mm9_v1_chr5_+_123794456_123794498	0.352014	AGCUUAU	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr6_-_71390592_71390638	0.346657	AGCUUAU	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr17_-_51951378_51951378	0.338345	AGCUUAU	AK158518|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163630|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr17_-_51971946_51971971	0.323547	AGCUUAU	AK088563|Satb1|20230|special AT-rich sequence binding protein 1	AK134040|Satb1|20230|special AT-rich sequence binding protein 1	U05252|Satb1|20230|special AT-rich sequence binding protein 1	AK037740|Satb1|20230|special AT-rich sequence binding protein 1	NM_009122|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr15_+_100766701_100766755	0.311019	AGCUUAU	NM_011323|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	U26707|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha	AF049617|Scn8a|20273|sodium channel, voltage-gated, type VIII, alpha
mm9_v1_chr12_+_54349663_54349663	0.31028	AGCUUAU	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr10_+_85763156_85763226	0.276122	AGCUUAU	NM_011595|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr4_+_122673318_122673349	0.276033	AGCUUAU	AK146959|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	BC053059|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	BC089346|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)	NM_008506|Mycl1|16918|v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian)
mm9_v1_chr9_-_70504934_70505009	0.275273	AGCUUAU	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr4_+_43888373_43888471	0.267016	AGCUUAU	BC132197|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC138065|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC145133|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK042266|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	NM_016678|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK157885|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AK143657|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	BC053025|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs	AB006960|Reck|53614|reversion-inducing-cysteine-rich protein with kazal motifs
mm9_v1_chr8_-_88079169_88079179	0.259099	AGCUUAU	NM_019794|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr19_+_7492081_7492131	0.238885	AGCUUAU	NM_175381|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr2_+_109757803_109757808	0.237213	AGCUUAU	NM_172671|Lgr4|107515|leucine-rich repeat-containing G protein-coupled receptor 4
mm9_v1_chr12_+_9581218_9581247	0.232715	AGCUUAU	NM_011859|Osr1|23967|odd-skipped related 1 (Drosophila)
mm9_v1_chr8_-_36028698_36028768	0.231646	AGCUUAU	BC057370|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	AK080913|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	NM_175091|Tnks|21951|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm9_v1_chr2_+_113167862_113167938	0.231314	AGCUUAU	NM_001043322|Fmn1|14260|formin 1	NM_010230|Fmn1|14260|formin 1	AK135758|Fmn1|14260|formin 1	X53599|Fmn1|14260|formin 1
mm9_v1_chr19_+_6276885_6276962	0.230194	AGCUUAU	AK171047|Ehd1|13660|EH-domain containing 1	NM_010119|Ehd1|13660|EH-domain containing 1	AF173156|Ehd1|13660|EH-domain containing 1	AK167721|Ehd1|13660|EH-domain containing 1	AF099186|Ehd1|13660|EH-domain containing 1	AK154651|Ehd1|13660|EH-domain containing 1	AK160535|Ehd1|13660|EH-domain containing 1	AK166701|Ehd1|13660|EH-domain containing 1	AK159943|Ehd1|13660|EH-domain containing 1	AK077536|Ehd1|13660|EH-domain containing 1	AK012896|Ehd1|13660|EH-domain containing 1	AK159191|Ehd1|13660|EH-domain containing 1	AK168610|Ehd1|13660|EH-domain containing 1	AK172539|Ehd1|13660|EH-domain containing 1	BC043332|Ehd1|13660|EH-domain containing 1	BC037094|Ehd1|13660|EH-domain containing 1	BC054828|Ehd1|13660|EH-domain containing 1	AK152821|Ehd1|13660|EH-domain containing 1
mm9_v1_chrX_+_39502588_39502859	0.229238	AGCUUAU	NM_001077712|Stag2|20843|stromal antigen 2	AK050415|Stag2|20843|stromal antigen 2	AK077318|Stag2|20843|stromal antigen 2	AK020968|Stag2|20843|stromal antigen 2	AK020316|Stag2|20843|stromal antigen 2
mm9_v1_chr15_-_91022198_91022269	0.224566	AGCUUAU	AK082588|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	AK051445|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	Z48670|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2	NM_011994|Abcd2|26874|ATP-binding cassette, sub-family D (ALD), member 2
mm9_v1_chr4_-_123089122_123089187	0.218766	AGCUUAU	AK085936|D830031N03Rik|442834|RIKEN cDNA D830031N03 gene	NM_001167918|D830031N03Rik|442834|RIKEN cDNA D830031N03 gene
mm9_v1_chr8_-_48799252_48799297	0.218604	AGCUUAU	AK048437|Cdkn2aip|70925|CDKN2A interacting protein	AK078329|Cdkn2aip|70925|CDKN2A interacting protein	AK167684|Cdkn2aip|70925|CDKN2A interacting protein	AK133831|Cdkn2aip|70925|CDKN2A interacting protein	NM_172407|Cdkn2aip|70925|CDKN2A interacting protein	AK035426|Cdkn2aip|70925|CDKN2A interacting protein	AK089057|Cdkn2aip|70925|CDKN2A interacting protein
mm9_v1_chr3_-_55987612_55987634	0.217343	AGCUUAU	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr3_+_94247220_94247297	0.216359	AGCUUAU	AK021196|Mrpl9|78523|mitochondrial ribosomal protein L9	AK161563|Mrpl9|78523|mitochondrial ribosomal protein L9	AK040055|Mrpl9|78523|mitochondrial ribosomal protein L9	AK162023|Mrpl9|78523|mitochondrial ribosomal protein L9	NM_030116|Mrpl9|78523|mitochondrial ribosomal protein L9	AK146237|Mrpl9|78523|mitochondrial ribosomal protein L9	AK046099|Mrpl9|78523|mitochondrial ribosomal protein L9	BC116385|Mrpl9|78523|mitochondrial ribosomal protein L9	BC116386|Mrpl9|78523|mitochondrial ribosomal protein L9	AB049637|Mrpl9|78523|mitochondrial ribosomal protein L9
mm9_v1_chr17_-_51972514_51972614	0.208471	AGCUUAU	BC011132|Satb1|20230|special AT-rich sequence binding protein 1	NM_001163632|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr6_-_86476063_86476189	0.200264	AGCUUAU	BC069915|Pcbp1|23983|poly(rC) binding protein 1	NM_011865|Pcbp1|23983|poly(rC) binding protein 1	AF073936|Pcbp1|23983|poly(rC) binding protein 1
mm9_v1_chr1_-_74170987_74171037	0.197328	AGCUUAU	NM_027884|Tns1|21961|tensin 1
mm9_v1_chr17_+_25359526_25359671	0.187311	AGCUUAU	AK004898|Unkl|74154|unkempt-like (Drosophila)	NM_028789|Unkl|74154|unkempt-like (Drosophila)	BC150842|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr13_+_34967355_34967379	0.164965	AGCUUAU	NM_013830|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK165391|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr11_-_100800603_100800824	0.163496	AGCUUAU	U06922|Stat3|20848|signal transducer and activator of transcription 3	AK145486|Stat3|20848|signal transducer and activator of transcription 3	U08378|Stat3|20848|signal transducer and activator of transcription 3	BC003806|Stat3|20848|signal transducer and activator of transcription 3	U30709|Stat3|20848|signal transducer and activator of transcription 3	BC019168|Stat3|20848|signal transducer and activator of transcription 3	AK153472|Stat3|20848|signal transducer and activator of transcription 3	AK153005|Stat3|20848|signal transducer and activator of transcription 3	L29278|Stat3|20848|signal transducer and activator of transcription 3	NM_011486|Stat3|20848|signal transducer and activator of transcription 3	NM_213659|Stat3|20848|signal transducer and activator of transcription 3	NM_213660|Stat3|20848|signal transducer and activator of transcription 3
mm9_v1_chr1_-_17087821_17087878	0.156763	AGCUUAU	AB024445|Jph1|57339|junctophilin 1	NM_020604|Jph1|57339|junctophilin 1
mm9_v1_chr10_-_120416369_120416397	0.153445	AGCUUAU	AF112300|Lemd3|380664|LEM domain containing 3	NM_001081193|Lemd3|380664|LEM domain containing 3
mm9_v1_chr2_+_59450080_59450110	0.151539	AGCUUAU	NM_198294|Tanc1|66860|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm9_v1_chr2_+_69735301_69735369	0.150046	AGCUUAU	DQ924536|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_001081548|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_177783|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	AK037622|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3
mm9_v1_chr2_-_152240762_152240779	0.1409	AGCUUAU	BC055755|Zcchc3|67917|zinc finger, CCHC domain containing 3	NM_175126|Zcchc3|67917|zinc finger, CCHC domain containing 3
mm9_v1_chr8_-_114400574_114400649	0.139955	AGCUUAU	AK018496|Tmem170|66817|transmembrane protein 170	NM_025781|Tmem170|66817|transmembrane protein 170	AK007926|Tmem170|66817|transmembrane protein 170	BC139377|Tmem170|66817|transmembrane protein 170	BC145964|Tmem170|66817|transmembrane protein 170
mm9_v1_chr11_-_82684653_82684724	0.138813	AGCUUAU	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr4_+_125781197_125781263	0.137352	AGCUUAU	NM_001145827|Stk40|74178|serine/threonine kinase 40	NM_028800|Stk40|74178|serine/threonine kinase 40	AK154780|Stk40|74178|serine/threonine kinase 40	AY336057|Stk40|74178|serine/threonine kinase 40	BC046981|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr17_+_25325344_25325353	0.13644	AGCUUAU	NM_001197024|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr15_+_97938874_97939027	0.135654	AGCUUAU	NM_001163487|Pfkm|18642|phosphofructokinase, muscle	D21867|Pfkm|18642|phosphofructokinase, muscle	AK049773|Pfkm|18642|phosphofructokinase, muscle	AK002711|Pfkm|18642|phosphofructokinase, muscle
mm9_v1_chr6_+_66846377_66846490	0.121728	AGCUUAU	NM_001177556|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177557|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177559|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_001177560|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	NM_025278|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK005561|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	BC040685|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK162342|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK166035|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK159872|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK148765|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12	AK033422|Gng12|14701|guanine nucleotide binding protein (G protein), gamma 12
mm9_v1_chr5_+_148242018_148242155	0.121481	AGCUUAU	NM_028291|Pan3|72587|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr7_-_127039189_127039258	0.109285	AGCUUAU	BC030335|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	AK155160|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	NM_001163703|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm9_v1_chr5_+_102910409_102910555	0.106355	AGCUUAU	AK080986|Arhgap24|231532|Rho GTPase activating protein 24	NM_029270|Arhgap24|231532|Rho GTPase activating protein 24	NM_146161|Arhgap24|231532|Rho GTPase activating protein 24	AK052395|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr1_+_132613903_132614127	0.104965	AGCUUAU	AK036938|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK036991|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	NM_178691|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC139034|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK044678|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC099948|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK053730|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm9_v1_chr14_+_18493380_18493473	0.101246	AGCUUAU	AK158826|Thrb|21834|thyroid hormone receptor beta	NM_001113417|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr3_+_34548916_34548976	0.0991888	AGCUUAU	NM_011443|Sox2|20674|SRY-box containing gene 2	U31967|Sox2|20674|SRY-box containing gene 2
mm9_v1_chr11_+_20991321_20991416	0.0963414	AGCUUAU	AK151660|Peli1|67245|pellino 1	AK152900|Peli1|67245|pellino 1	AK152997|Peli1|67245|pellino 1	AK153372|Peli1|67245|pellino 1	NM_023324|Peli1|67245|pellino 1	AK167525|Peli1|67245|pellino 1	BC026695|Peli1|67245|pellino 1
mm9_v1_chr14_-_21871647_21871707	0.0880964	AGCUUAU	AF242857|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit	NM_018829|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr11_+_98657082_98657130	0.0844178	AGCUUAU	BC058629|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	NM_028722|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC043039|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	AK053719|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC055715|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr11_+_33947115_33947287	0.0832241	AGCUUAU	AK036727|Lcp2|16822|lymphocyte cytosolic protein 2	AK037970|Lcp2|16822|lymphocyte cytosolic protein 2	U20159|Lcp2|16822|lymphocyte cytosolic protein 2	AK168134|Lcp2|16822|lymphocyte cytosolic protein 2	AK153374|Lcp2|16822|lymphocyte cytosolic protein 2	BC006948|Lcp2|16822|lymphocyte cytosolic protein 2	NM_010696|Lcp2|16822|lymphocyte cytosolic protein 2
mm9_v1_chr12_-_109241423_109241623	0.0810673	AGCUUAU	BC019503|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AF186019|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AK088219|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043551|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043553|Bcl11b|58208|B-cell leukemia/lymphoma 11B	AB043583|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_001079883|Bcl11b|58208|B-cell leukemia/lymphoma 11B	NM_021399|Bcl11b|58208|B-cell leukemia/lymphoma 11B
mm9_v1_chr5_+_65928483_65928591	0.077754	AGCUUAU	AK139564|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	NM_016786|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK048194|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK035371|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK018366|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK160728|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK031055|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK036068|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK162142|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AB011081|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	BC085311|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)	AK166647|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)
mm9_v1_chr6_-_126595818_126595818	0.076307	AGCUUAU	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr3_+_128902822_128902860	0.0733678	AGCUUAU	AB006321|Pitx2|18741|paired-like homeodomain transcription factor 2	NM_011098|Pitx2|18741|paired-like homeodomain transcription factor 2	NM_001042504|Pitx2|18741|paired-like homeodomain transcription factor 2	U80011|Pitx2|18741|paired-like homeodomain transcription factor 2	U80036|Pitx2|18741|paired-like homeodomain transcription factor 2	AF048723|Pitx2|18741|paired-like homeodomain transcription factor 2	U80010|Pitx2|18741|paired-like homeodomain transcription factor 2
mm9_v1_chr5_-_46247789_46247790	0.0682147	AGCUUAU	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr3_+_97817440_97817471	0.0669478	AGCUUAU	AK157200|Notch2|18129|Notch gene homolog 2 (Drosophila)	D32210|Notch2|18129|Notch gene homolog 2 (Drosophila)	NM_010928|Notch2|18129|Notch gene homolog 2 (Drosophila)
mm9_v1_chr7_-_127038916_127038971	0.0669048	AGCUUAU	AK029043|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	NM_173408|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm9_v1_chr10_+_42481292_42481301	0.0586944	AGCUUAU	BC059816|Sec63|140740|SEC63-like (S. cerevisiae)	NM_153055|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr9_-_70351520_70351611	0.0537619	AGCUUAU	AK171932|Rnf111|93836|ring finger 111	AF330197|Rnf111|93836|ring finger 111	NM_033604|Rnf111|93836|ring finger 111
mm9_v1_chr15_-_12522310_12522310	0.0509435	AGCUUAU	NM_001081064|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr6_+_134780207_134780442	0.0503253	AGCUUAU	AK045467|Crebl2|232430|cAMP responsive element binding protein-like 2	NM_177687|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109358|Crebl2|232430|cAMP responsive element binding protein-like 2	BC109359|Crebl2|232430|cAMP responsive element binding protein-like 2	AK195782|Crebl2|232430|cAMP responsive element binding protein-like 2
mm9_v1_chr9_-_96531911_96531965	0.0385234	AGCUUAU	AB056433|Rasa2|114713|RAS p21 protein activator 2	AK034434|Rasa2|114713|RAS p21 protein activator 2	NM_053268|Rasa2|114713|RAS p21 protein activator 2	AK154499|Rasa2|114713|RAS p21 protein activator 2	AK166654|Rasa2|114713|RAS p21 protein activator 2
mm9_v1_chr6_+_8459595_8459595	0.0339356	AGCUUAU	NM_133236|Glcci1|170772|glucocorticoid induced transcript 1
mm9_v1_chr16_-_89818596_89818596	0.0312931	AGCUUAU	AK136856|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_001145887|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr17_+_8118823_8118919	0.0284374	AGCUUAU	NM_145968|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC030886|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC039780|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC150728|Tagap|72536|T-cell activation Rho GTPase-activating protein
mm9_v1_chr2_-_58210162_58210168	0.0255634	AGCUUAU	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr5_-_5694033_5694105	0.0204665	AGCUUAU	AK145468|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK166607|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK162343|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK165644|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK089927|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103156|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103157|Steap2|74051|six transmembrane epithelial antigen of prostate 2
mm9_v1_chr19_-_29880498_29880498	0.0166345	AGCUUAU	AK051413|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene	NM_172836|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene
mm9_v1_chr6_-_126114938_126114977	0.0141559	AGCUUAU	BC065785|Ntf3|18205|neurotrophin 3	AK132586|Ntf3|18205|neurotrophin 3	NM_001164035|Ntf3|18205|neurotrophin 3
mm9_v1_chr8_-_109620413_109620444	0.0121849	AGCUUAU	AK089419|Terf2|21750|telomeric repeat binding factor 2	BC046284|Terf2|21750|telomeric repeat binding factor 2	AK049507|Terf2|21750|telomeric repeat binding factor 2	NM_001083118|Terf2|21750|telomeric repeat binding factor 2	NM_009353|Terf2|21750|telomeric repeat binding factor 2
mm9_v1_chr3_-_115710131_115710328	0.00824499	AGCUUAU	AF529196|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AF233322|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC050193|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC017136|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK075802|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK010008|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	NM_023214|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7
mm9_v1_chr12_+_84973146_84973375	0.00183906	AGCUUAU	NM_027349|Rbm25|67039|RNA binding motif protein 25	AK011403|Rbm25|67039|RNA binding motif protein 25	AK164367|Rbm25|67039|RNA binding motif protein 25	AK151910|Rbm25|67039|RNA binding motif protein 25	AK144341|AA645497|100499479|expressed sequence AA645497
