mm9_v1_chr2_+_138104219_138104260	7.12256	AGUGCAA	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr2_-_79296732_79296799	6.19361	AGUGCAA	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr4_+_97248556_97248685	4.89549	AGUGCAA	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr1_+_179374783_179374796	4.52508	AGUGCAA	BC089333|Zfp238|30928|zinc finger protein 238	NM_001012330|Zfp238|30928|zinc finger protein 238
mm9_v1_chr6_+_108163089_108163111	4.07643	AGUGCAA	AK047719|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	AK137477|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	NM_010585|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1	X15373|Itpr1|16438|inositol 1,4,5-triphosphate receptor 1
mm9_v1_chr4_+_97444312_97444317	3.60405	AGUGCAA	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr8_-_97220127_97220176	3.56301	AGUGCAA	AK018198|Pllp|67801|plasma membrane proteolipid	AK032540|Pllp|67801|plasma membrane proteolipid	BC024534|Pllp|67801|plasma membrane proteolipid	AK002477|Pllp|67801|plasma membrane proteolipid	NM_026385|Pllp|67801|plasma membrane proteolipid
mm9_v1_chr15_+_40486577_40486623	3.33971	AGUGCAA	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr8_-_116372637_116372742	3.17426	AGUGCAA	AK035797|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	AK081122|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	NM_172466|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	AK053851|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm9_v1_chr4_-_82151180_82151288	3.04921	AGUGCAA	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr8_-_70342105_70342226	3.0113	AGUGCAA	BC131913|Psd3|234353|pleckstrin and Sec7 domain containing 3	BC145641|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK031477|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK147606|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_027626|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr4_-_25727109_25727390	2.92178	AGUGCAA	AK049122|Fut9|14348|fucosyltransferase 9	NM_010243|Fut9|14348|fucosyltransferase 9	AK032177|Fut9|14348|fucosyltransferase 9	AK139133|Fut9|14348|fucosyltransferase 9	AK033607|Fut9|14348|fucosyltransferase 9
mm9_v1_chr6_-_113991945_113992108	2.67318	AGUGCAA	AK147240|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	DQ406821|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147369|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147501|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_009723|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr6_-_113841356_113841375	2.56618	AGUGCAA	DQ406822|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK051287|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	BC075643|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_001036684|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr11_+_6963421_6963491	2.45783	AGUGCAA	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr10_-_49508472_49508559	2.41898	AGUGCAA	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr17_+_44215761_44215847	2.40381	AGUGCAA	NM_032003|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	NM_001168620|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AK032341|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AF233377|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC089320|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm9_v1_chr8_-_74195650_74195661	2.34247	AGUGCAA	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr4_-_53172748_53172872	2.31301	AGUGCAA	AK051920|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1	NM_013454|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr18_+_77424573_77424607	2.27467	AGUGCAA	AK013542|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	NM_013666|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	NM_153124|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	BC034855|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm9_v1_chr3_-_125641429_125641514	2.25316	AGUGCAA	AK163650|Ugt8a|22239|UDP galactosyltransferase 8A	AK128994|Ugt8a|22239|UDP galactosyltransferase 8A	AK137364|Ugt8a|22239|UDP galactosyltransferase 8A	AK144005|Ugt8a|22239|UDP galactosyltransferase 8A	NM_011674|Ugt8a|22239|UDP galactosyltransferase 8A	AK078371|Ugt8a|22239|UDP galactosyltransferase 8A
mm9_v1_chr9_-_107134182_107134239	2.17985	AGUGCAA	AY145302|Dock3|208869|dedicator of cyto-kinesis 3	AK172930|Dock3|208869|dedicator of cyto-kinesis 3	NM_153413|Dock3|208869|dedicator of cyto-kinesis 3
mm9_v1_chr11_-_90252228_90252237	2.17501	AGUGCAA	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr1_-_188529867_188529872	2.08896	AGUGCAA	X57413|Tgfb2|21808|transforming growth factor, beta 2	NM_009367|Tgfb2|21808|transforming growth factor, beta 2
mm9_v1_chr16_+_30599808_30599823	2.05013	AGUGCAA	AK083036|Fam43a|224093|family with sequence similarity 43, member A	NM_177632|Fam43a|224093|family with sequence similarity 43, member A	AK137950|Fam43a|224093|family with sequence similarity 43, member A	BC099947|Fam43a|224093|family with sequence similarity 43, member A
mm9_v1_chr8_-_17535279_17535384	1.86279	AGUGCAA	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr2_+_131735663_131735721	1.85693	AGUGCAA	NM_011170|Prnp|19122|prion protein	AK148061|Prnp|19122|prion protein	AK158908|Prnp|19122|prion protein	AK159056|Prnp|19122|prion protein	AK162504|Prnp|19122|prion protein	AK148892|Prnp|19122|prion protein	AK157840|Prnp|19122|prion protein	AK150963|Prnp|19122|prion protein	AK159224|Prnp|19122|prion protein	AK160091|Prnp|19122|prion protein
mm9_v1_chr18_-_35374663_35374683	1.82596	AGUGCAA	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr2_+_136539143_136539198	1.80471	AGUGCAA	NM_011428|Snap25|20614|synaptosomal-associated protein 25	AK078038|Snap25|20614|synaptosomal-associated protein 25
mm9_v1_chr7_-_71083734_71083823	1.68938	AGUGCAA	AJ245644|Klf13|50794|Kruppel-like factor 13	AJ275987|Klf13|50794|Kruppel-like factor 13	BC051557|Klf13|50794|Kruppel-like factor 13	AK155298|Klf13|50794|Kruppel-like factor 13	AF251796|Klf13|50794|Kruppel-like factor 13	NM_021366|Klf13|50794|Kruppel-like factor 13
mm9_v1_chr10_+_105907394_105907408	1.62233	AGUGCAA	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr19_+_21346734_21346785	1.53078	AGUGCAA	AK018054|Zfand5|22682|zinc finger, AN1-type domain 5	AK076397|Zfand5|22682|zinc finger, AN1-type domain 5	BC119124|Zfand5|22682|zinc finger, AN1-type domain 5	BC119126|Zfand5|22682|zinc finger, AN1-type domain 5	NM_009551|Zfand5|22682|zinc finger, AN1-type domain 5	AK131911|Zfand5|22682|zinc finger, AN1-type domain 5	BC080270|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr8_+_47556353_47556483	1.52164	AGUGCAA	NM_007981|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK153050|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK145900|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK158388|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr13_+_64263131_64263227	1.50983	AGUGCAA	AK016800|Habp4|56541|hyaluronic acid binding protein 4	BC082806|Habp4|56541|hyaluronic acid binding protein 4	NM_019986|Habp4|56541|hyaluronic acid binding protein 4	AK144206|Habp4|56541|hyaluronic acid binding protein 4	AK146525|Habp4|56541|hyaluronic acid binding protein 4	AF227684|Habp4|56541|hyaluronic acid binding protein 4
mm9_v1_chr11_-_59778306_59778447	1.50345	AGUGCAA	CT010376|Rasd1|19416|RAS, dexamethasone-induced 1	BC034166|Rasd1|19416|RAS, dexamethasone-induced 1	AF009246|Rasd1|19416|RAS, dexamethasone-induced 1	NM_009026|Rasd1|19416|RAS, dexamethasone-induced 1	AK038932|Rasd1|19416|RAS, dexamethasone-induced 1
mm9_v1_chr10_-_80889856_80889928	1.49921	AGUGCAA	U57635|Nfic|18029|nuclear factor I/C	Y07692|Nfic|18029|nuclear factor I/C	AK087539|Nfic|18029|nuclear factor I/C	AK147496|Nfic|18029|nuclear factor I/C	AK155258|Nfic|18029|nuclear factor I/C	NM_008688|Nfic|18029|nuclear factor I/C	NM_026756|Nfic|18029|nuclear factor I/C
mm9_v1_chr11_-_106134024_106134359	1.49385	AGUGCAA	AK166123|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	AK159259|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_001130187|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr1_+_182260606_182260741	1.49256	AGUGCAA	NM_001081175|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	AK046612|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	AK053759|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	BC151160|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	BC157986|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B	BC158000|Itpkb|320404|inositol 1,4,5-trisphosphate 3-kinase B
mm9_v1_chr4_+_107474842_107475017	1.44423	AGUGCAA	NM_001080926|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	D85463|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	BC127061|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	AJ312058|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm9_v1_chr4_-_86876328_86876443	1.42155	AGUGCAA	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr2_+_181501718_181501871	1.37987	AGUGCAA	AK165786|Myt1|17932|myelin transcription factor 1	NM_001171616|Myt1|17932|myelin transcription factor 1	NM_008665|Myt1|17932|myelin transcription factor 1	AB082378|Myt1|17932|myelin transcription factor 1	AK082994|Myt1|17932|myelin transcription factor 1
mm9_v1_chr18_+_69504145_69504185	1.34526	AGUGCAA	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr7_+_52419289_52419313	1.31002	AGUGCAA	NM_182993|Slc17a7|72961|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm9_v1_chr14_+_45839391_45839393	1.29803	AGUGCAA	AK082691|Gpr137c|70713|G protein-coupled receptor 137C	NM_027518|Gpr137c|70713|G protein-coupled receptor 137C	AK018183|Gpr137c|70713|G protein-coupled receptor 137C
mm9_v1_chr17_-_87846158_87846274	1.2869	AGUGCAA	BC021347|Calm2|12314|calmodulin 2	BC051444|Calm2|12314|calmodulin 2	BC100301|Calm2|12314|calmodulin 2	AK013068|Calm2|12314|calmodulin 2	AK012247|Calm2|12314|calmodulin 2	AK168741|Calm2|12314|calmodulin 2	AK005089|Calm2|12314|calmodulin 2	AK012564|Calm2|12314|calmodulin 2	AK161268|Calm2|12314|calmodulin 2	AK161984|Calm2|12314|calmodulin 2	AK152303|Calm2|12314|calmodulin 2	L31642|Calm2|12314|calmodulin 2	AK160636|Calm2|12314|calmodulin 2	NM_007589|Calm2|12314|calmodulin 2
mm9_v1_chr11_-_20731016_20731238	1.27032	AGUGCAA	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr18_-_23197156_23197163	1.26016	AGUGCAA	BC056377|Nol4|319211|nucleolar protein 4	NM_001161483|Nol4|319211|nucleolar protein 4
mm9_v1_chr17_-_67703726_67703889	1.24526	AGUGCAA	X58287|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	BC058614|Ptprm|19274|protein tyrosine phosphatase, receptor type, M	NM_008984|Ptprm|19274|protein tyrosine phosphatase, receptor type, M
mm9_v1_chr19_+_32832002_32832163	1.24304	AGUGCAA	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr19_-_4397075_4397085	1.23222	AGUGCAA	AK037157|Kdm2a|225876|lysine (K)-specific demethylase 2A	AK161980|Kdm2a|225876|lysine (K)-specific demethylase 2A	NM_001001984|Kdm2a|225876|lysine (K)-specific demethylase 2A	AK155866|Kdm2a|225876|lysine (K)-specific demethylase 2A
mm9_v1_chr2_-_167318313_167318390	1.22943	AGUGCAA	AK051741|Spata2|263876|spermatogenesis associated 2	AK144826|Spata2|263876|spermatogenesis associated 2	AK171240|Spata2|263876|spermatogenesis associated 2	AK171664|Spata2|263876|spermatogenesis associated 2	AK171852|Spata2|263876|spermatogenesis associated 2	BC034597|Spata2|263876|spermatogenesis associated 2	AK156188|Spata2|263876|spermatogenesis associated 2	AK170356|Spata2|263876|spermatogenesis associated 2	AK162743|Spata2|263876|spermatogenesis associated 2	NM_170756|Spata2|263876|spermatogenesis associated 2
mm9_v1_chr8_-_63433528_63433596	1.20073	AGUGCAA	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr12_-_73337707_73337756	1.18697	AGUGCAA	AK002997|Rtn1|104001|reticulon 1	NM_001007596|Rtn1|104001|reticulon 1
mm9_v1_chr17_+_42452895_42453084	1.17735	AGUGCAA	NM_028474|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	AK014270|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene	BC145294|3110082D06Rik|627626|RIKEN cDNA 3110082D06 gene
mm9_v1_chr3_-_115417932_115417972	1.1559	AGUGCAA	AK004591|S1pr1|13609|sphingosine-1-phosphate receptor 1	NM_007901|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr6_+_117118552_117118673	1.14851	AGUGCAA	NM_001012477|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_013655|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_021704|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK157553|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK045092|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK075596|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43804|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43805|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12029|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12030|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC046827|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC006640|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC020297|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC029335|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D21072|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	S74318|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	CT010389|Cxcl12|20315|chemokine (C-X-C motif) ligand 12
mm9_v1_chr11_+_87574041_87574047	1.10852	AGUGCAA	AK043747|Bzrap1|207777|benzodiazepine receptor associated protein 1	NM_172449|Bzrap1|207777|benzodiazepine receptor associated protein 1
mm9_v1_chr2_-_144096253_144096308	1.09365	AGUGCAA	AK007676|Snx5|69178|sorting nexin 5	AK029463|Snx5|69178|sorting nexin 5	NM_024225|Snx5|69178|sorting nexin 5
mm9_v1_chr5_+_31117077_31117214	1.07941	AGUGCAA	BC048833|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AF468005|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	BC057918|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	NM_133350|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AK177097|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr8_+_123061308_123061392	1.03075	AGUGCAA	NM_001145896|Gse1|382034|genetic suppressor element 1	AK154829|Gse1|382034|genetic suppressor element 1	AK042915|Gse1|382034|genetic suppressor element 1
mm9_v1_chr17_-_45823145_45823192	1.03019	AGUGCAA	NM_198167|Tmem63b|224807|transmembrane protein 63b	AK159673|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr1_+_136543253_136543257	1.0182	AGUGCAA	AB036514|Syt2|20980|synaptotagmin II	AK036357|Syt2|20980|synaptotagmin II	NM_009307|Syt2|20980|synaptotagmin II
mm9_v1_chr8_+_123012667_123012765	1.01366	AGUGCAA	BC043094|Gse1|382034|genetic suppressor element 1	NM_198671|Gse1|382034|genetic suppressor element 1
mm9_v1_chr2_-_38142866_38142913	1.0073	AGUGCAA	BC027786|Dennd1a|227801|DENN/MADD domain containing 1A	AK137530|Dennd1a|227801|DENN/MADD domain containing 1A	BC023016|Dennd1a|227801|DENN/MADD domain containing 1A	NM_146122|Dennd1a|227801|DENN/MADD domain containing 1A
mm9_v1_chr11_-_88725877_88725929	0.995846	AGUGCAA	AK076216|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_001042541|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr3_+_96361879_96362304	0.951649	AGUGCAA	AK089304|Txnip|56338|thioredoxin interacting protein	AK089403|Txnip|56338|thioredoxin interacting protein	NM_001009935|Txnip|56338|thioredoxin interacting protein	NM_023719|Txnip|56338|thioredoxin interacting protein	AK004653|Txnip|56338|thioredoxin interacting protein	AK082476|Txnip|56338|thioredoxin interacting protein	AK088870|Txnip|56338|thioredoxin interacting protein	AK089351|Txnip|56338|thioredoxin interacting protein	AK155517|Txnip|56338|thioredoxin interacting protein	AK171205|Txnip|56338|thioredoxin interacting protein	AK171312|Txnip|56338|thioredoxin interacting protein	AK171425|Txnip|56338|thioredoxin interacting protein	AK171456|Txnip|56338|thioredoxin interacting protein	AK171464|Txnip|56338|thioredoxin interacting protein	AK171527|Txnip|56338|thioredoxin interacting protein	BC031850|Txnip|56338|thioredoxin interacting protein	BC011212|Txnip|56338|thioredoxin interacting protein	AK187108|Txnip|56338|thioredoxin interacting protein	AF173681|Txnip|56338|thioredoxin interacting protein	AF282826|Txnip|56338|thioredoxin interacting protein	AK192038|Txnip|56338|thioredoxin interacting protein	AK214578|Txnip|56338|thioredoxin interacting protein
mm9_v1_chr18_+_84257471_84257589	0.946033	AGUGCAA	AK083082|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK047559|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK081988|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116427|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116428|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	NM_146090|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2
mm9_v1_chr5_-_124482223_124482295	0.932615	AGUGCAA	AK082658|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172114|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172337|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK149893|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK166359|Vps37b|330192|vacuolar protein sorting 37B (yeast)	BC026744|Vps37b|330192|vacuolar protein sorting 37B (yeast)	NM_177876|Vps37b|330192|vacuolar protein sorting 37B (yeast)
mm9_v1_chr6_+_86799460_86799754	0.929431	AGUGCAA	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr18_+_63081977_63081983	0.922945	AGUGCAA	AK172004|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK156319|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	NM_133237|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC141269|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC141270|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1
mm9_v1_chr11_-_115948258_115948310	0.906696	AGUGCAA	AK079300|Wbp2|22378|WW domain binding protein 2	AK151368|Wbp2|22378|WW domain binding protein 2	AK170317|Wbp2|22378|WW domain binding protein 2	NM_016852|Wbp2|22378|WW domain binding protein 2	U40826|Wbp2|22378|WW domain binding protein 2	AK004824|Wbp2|22378|WW domain binding protein 2	AK146572|Wbp2|22378|WW domain binding protein 2	AK170474|Wbp2|22378|WW domain binding protein 2	BC055058|Wbp2|22378|WW domain binding protein 2
mm9_v1_chr11_-_119409041_119409133	0.894314	AGUGCAA	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr7_-_116895708_116895795	0.883029	AGUGCAA	AK009147|Tmem9b|56786|TMEM9 domain family, member B	AK077253|Tmem9b|56786|TMEM9 domain family, member B	AK007430|Tmem9b|56786|TMEM9 domain family, member B	BC002208|Tmem9b|56786|TMEM9 domain family, member B	NM_020050|Tmem9b|56786|TMEM9 domain family, member B	AK147127|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chrX_-_119510890_119511030	0.882851	AGUGCAA	BC027045|Nap1l3|54561|nucleosome assembly protein 1-like 3	AK078521|Nap1l3|54561|nucleosome assembly protein 1-like 3	BC020176|Nap1l3|54561|nucleosome assembly protein 1-like 3	NM_138742|Nap1l3|54561|nucleosome assembly protein 1-like 3	AB010711|Nap1l3|54561|nucleosome assembly protein 1-like 3
mm9_v1_chr2_+_71819264_71819343	0.864769	AGUGCAA	AK220281|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AB021132|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK161934|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK017479|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AF115480|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	BC139822|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	NM_019688|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr4_+_34011567_34011625	0.858403	AGUGCAA	BC075644|Cnr1|12801|cannabinoid receptor 1 (brain)	BC070447|Cnr1|12801|cannabinoid receptor 1 (brain)	NM_007726|Cnr1|12801|cannabinoid receptor 1 (brain)	AY522554|Cnr1|12801|cannabinoid receptor 1 (brain)
mm9_v1_chr12_-_103943059_103943209	0.842792	AGUGCAA	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr10_+_59740373_59740429	0.838862	AGUGCAA	NM_001146120|Psap|19156|prosaposin	NM_001146121|Psap|19156|prosaposin	NM_001146122|Psap|19156|prosaposin	NM_001146123|Psap|19156|prosaposin	NM_011179|Psap|19156|prosaposin	AK167902|Psap|19156|prosaposin	AK151686|Psap|19156|prosaposin	AK152203|Psap|19156|prosaposin
mm9_v1_chr9_+_58430031_58430196	0.836895	AGUGCAA	NM_009145|Nptn|20320|neuroplastin	BC039191|Nptn|20320|neuroplastin
mm9_v1_chr8_-_48374755_48374779	0.833993	AGUGCAA	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr8_-_63462080_63462110	0.831721	AGUGCAA	AK159698|Clcn3|12725|chloride channel 3	AK036501|Clcn3|12725|chloride channel 3	NM_007711|Clcn3|12725|chloride channel 3	NM_173873|Clcn3|12725|chloride channel 3	NM_173874|Clcn3|12725|chloride channel 3
mm9_v1_chr17_-_17761403_17761607	0.820639	AGUGCAA	BC120925|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC120926|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK029094|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK036967|Lnpep|240028|leucyl/cystinyl aminopeptidase	NM_172827|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC066791|Lnpep|240028|leucyl/cystinyl aminopeptidase
mm9_v1_chr3_-_51364525_51364799	0.818472	AGUGCAA	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr9_-_116084395_116084480	0.8142	AGUGCAA	AK046561|Tgfbr2|21813|transforming growth factor, beta receptor II	AK159327|Tgfbr2|21813|transforming growth factor, beta receptor II	AK148167|Tgfbr2|21813|transforming growth factor, beta receptor II	AK053793|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_009371|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_029575|Tgfbr2|21813|transforming growth factor, beta receptor II
mm9_v1_chr3_-_55987612_55987634	0.798698	AGUGCAA	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr15_-_81688686_81688755	0.798061	AGUGCAA	BC094031|Tob2|57259|transducer of ERBB2, 2	BC021869|Tob2|57259|transducer of ERBB2, 2	AK049766|Tob2|57259|transducer of ERBB2, 2	AK080817|Tob2|57259|transducer of ERBB2, 2	AK143542|Tob2|57259|transducer of ERBB2, 2	AK037631|Tob2|57259|transducer of ERBB2, 2	AK044623|Tob2|57259|transducer of ERBB2, 2	NM_020507|Tob2|57259|transducer of ERBB2, 2
mm9_v1_chr15_+_25552273_25552341	0.797718	AGUGCAA	AK028552|Myo10|17909|myosin X	AK089482|Myo10|17909|myosin X	NM_019472|Myo10|17909|myosin X
mm9_v1_chr2_+_91490266_91490274	0.796514	AGUGCAA	AK046291|Arhgap1|228359|Rho GTPase activating protein 1	NM_001145902|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr2_+_134611879_134611910	0.790159	AGUGCAA	AK143153|Plcb1|18795|phospholipase C, beta 1	NM_001145830|Plcb1|18795|phospholipase C, beta 1	NM_019677|Plcb1|18795|phospholipase C, beta 1	AK040911|Plcb1|18795|phospholipase C, beta 1
mm9_v1_chr1_+_6720087_6720131	0.777049	AGUGCAA	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr1_+_174271338_174271373	0.774176	AGUGCAA	AK048864|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	NM_001039484|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr10_-_75807976_75808035	0.765088	AGUGCAA	AK052899|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	NM_001081419|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	AK050040|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm9_v1_chr15_-_57907967_57908070	0.761262	AGUGCAA	AK220508|Zhx1|22770|zinc fingers and homeoboxes 1	NM_001042438|Zhx1|22770|zinc fingers and homeoboxes 1	NM_009572|Zhx1|22770|zinc fingers and homeoboxes 1	AK051410|Zhx1|22770|zinc fingers and homeoboxes 1
mm9_v1_chr17_-_45686604_45686625	0.737181	AGUGCAA	BC079879|Tmem151b|210573|transmembrane protein 151B	NM_001013749|Tmem151b|210573|transmembrane protein 151B
mm9_v1_chr5_-_149364353_149364422	0.725852	AGUGCAA	NM_011908|Ubl3|24109|ubiquitin-like 3	BC024507|Ubl3|24109|ubiquitin-like 3	BC043729|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr9_+_21229348_21229458	0.716054	AGUGCAA	AK172231|Dnm2|13430|dynamin 2	AK170574|Dnm2|13430|dynamin 2	AK005012|Dnm2|13430|dynamin 2	AK157844|Dnm2|13430|dynamin 2	AK150046|Dnm2|13430|dynamin 2	AK171566|Dnm2|13430|dynamin 2	NM_001039520|Dnm2|13430|dynamin 2	AK171049|Dnm2|13430|dynamin 2	L31398|Dnm2|13430|dynamin 2
mm9_v1_chr6_-_99616745_99616839	0.715107	AGUGCAA	AY628329|Eif4e3|66892|eukaryotic translation initiation factor 4E member 3	AK007268|Eif4e3|66892|eukaryotic translation initiation factor 4E member 3	BC027014|Eif4e3|66892|eukaryotic translation initiation factor 4E member 3	AK005054|Eif4e3|66892|eukaryotic translation initiation factor 4E member 3	NM_025829|Eif4e3|66892|eukaryotic translation initiation factor 4E member 3	AK035794|Eif4e3|66892|eukaryotic translation initiation factor 4E member 3
mm9_v1_chr12_+_3426883_3427022	0.701296	AGUGCAA	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr14_-_32249046_32249246	0.697513	AGUGCAA	AB016835|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	BC053741|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	NM_011894|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)
mm9_v1_chr5_-_63157309_63157425	0.69208	AGUGCAA	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr15_+_103284200_103284376	0.683259	AGUGCAA	AK040192|Nckap1l|105855|NCK associated protein 1 like	NM_153505|Nckap1l|105855|NCK associated protein 1 like	AK149862|Nckap1l|105855|NCK associated protein 1 like	AK083390|Nckap1l|105855|NCK associated protein 1 like	BC037096|Nckap1l|105855|NCK associated protein 1 like	AK134039|Nckap1l|105855|NCK associated protein 1 like	BC030040|Nckap1l|105855|NCK associated protein 1 like	BC007186|Nckap1l|105855|NCK associated protein 1 like
mm9_v1_chr1_-_39535525_39535591	0.679416	AGUGCAA	BC065081|Tbc1d8|54610|TBC1 domain family, member 8	AK141816|Tbc1d8|54610|TBC1 domain family, member 8	AK141520|Tbc1d8|54610|TBC1 domain family, member 8	AK138630|Tbc1d8|54610|TBC1 domain family, member 8	NM_018775|Tbc1d8|54610|TBC1 domain family, member 8
mm9_v1_chr8_-_70498472_70498472	0.674956	AGUGCAA	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr6_-_116143380_116143517	0.659972	AGUGCAA	AK173022|Tmcc1|330401|transmembrane and coiled coil domains 1	NM_177412|Tmcc1|330401|transmembrane and coiled coil domains 1
mm9_v1_chr13_+_97312572_97312733	0.65793	AGUGCAA	AK030305|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	NM_001164222|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	NM_023420|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK047100|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK080958|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK038061|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK163624|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK012989|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	AK038803|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	BC016197|Col4a3bp|68018|collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
mm9_v1_chr3_+_60305108_60305212	0.655304	AGUGCAA	AK162039|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK149405|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AB093240|Mbnl1|56758|muscleblind-like 1 (Drosophila)	NM_020007|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK088871|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK153848|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC060031|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC096600|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr19_-_46401618_46401645	0.649791	AGUGCAA	BC057353|Psd|73728|pleckstrin and Sec7 domain containing	NM_028627|Psd|73728|pleckstrin and Sec7 domain containing
mm9_v1_chr16_-_17722915_17723043	0.633591	AGUGCAA	AF328770|Med15|94112|mediator complex subunit 15	AK131186|Med15|94112|mediator complex subunit 15	AK171628|Med15|94112|mediator complex subunit 15	BC054779|Med15|94112|mediator complex subunit 15	AK166522|Med15|94112|mediator complex subunit 15	AK038915|Med15|94112|mediator complex subunit 15	AK052231|Med15|94112|mediator complex subunit 15	AK142224|Med15|94112|mediator complex subunit 15	NM_001040683|Med15|94112|mediator complex subunit 15	NM_033609|Med15|94112|mediator complex subunit 15	AK169904|Med15|94112|mediator complex subunit 15
mm9_v1_chr14_-_46149660_46149750	0.627809	AGUGCAA	BC033436|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK079588|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK166552|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK145030|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK165608|Fermt2|218952|fermitin family homolog 2 (Drosophila)	NM_146054|Fermt2|218952|fermitin family homolog 2 (Drosophila)
mm9_v1_chr15_-_38944199_38944296	0.626568	AGUGCAA	AK172597|Slc25a32|69906|solute carrier family 25, member 32	AK145178|Slc25a32|69906|solute carrier family 25, member 32	AK172029|Slc25a32|69906|solute carrier family 25, member 32	AK170643|Slc25a32|69906|solute carrier family 25, member 32	NM_172402|Slc25a32|69906|solute carrier family 25, member 32
mm9_v1_chr18_+_4634926_4634930	0.614627	AGUGCAA	AK142315|9430020K01Rik|240185|RIKEN cDNA 9430020K01 gene	NM_001081963|9430020K01Rik|240185|RIKEN cDNA 9430020K01 gene
mm9_v1_chr3_+_152009436_152009469	0.610772	AGUGCAA	AK087467|Usp33|170822|ubiquitin specific peptidase 33	NM_001076676|Usp33|170822|ubiquitin specific peptidase 33	NM_133247|Usp33|170822|ubiquitin specific peptidase 33	AF383174|Usp33|170822|ubiquitin specific peptidase 33	AK082251|Usp33|170822|ubiquitin specific peptidase 33	AK082943|Usp33|170822|ubiquitin specific peptidase 33
mm9_v1_chr1_-_24594228_24594275	0.609388	AGUGCAA	BC118970|Col19a1|12823|collagen, type XIX, alpha 1	AB000636|Col19a1|12823|collagen, type XIX, alpha 1	AK149136|Col19a1|12823|collagen, type XIX, alpha 1	NM_007733|Col19a1|12823|collagen, type XIX, alpha 1
mm9_v1_chr6_-_58974400_58974495	0.609049	AGUGCAA	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr18_-_23200150_23200199	0.607145	AGUGCAA	AK006244|Nol4|319211|nucleolar protein 4	AK031008|Nol4|319211|nucleolar protein 4	NM_199024|Nol4|319211|nucleolar protein 4	AK005959|Nol4|319211|nucleolar protein 4
mm9_v1_chr15_-_101966611_101966682	0.601828	AGUGCAA	BC048820|Spryd3|223918|SPRY domain containing 3	NM_001033277|Spryd3|223918|SPRY domain containing 3	AK146689|Spryd3|223918|SPRY domain containing 3
mm9_v1_chr7_+_127245860_127245969	0.583462	AGUGCAA	AK080630|Tmem159|233806|transmembrane protein 159	AK078811|Tmem159|233806|transmembrane protein 159	AK167192|Tmem159|233806|transmembrane protein 159	AK142240|Tmem159|233806|transmembrane protein 159	AK150434|Tmem159|233806|transmembrane protein 159	AK087074|Tmem159|233806|transmembrane protein 159	AK158048|Tmem159|233806|transmembrane protein 159	AK158249|Tmem159|233806|transmembrane protein 159	AK158250|Tmem159|233806|transmembrane protein 159	BC006689|Tmem159|233806|transmembrane protein 159	NM_145586|Tmem159|233806|transmembrane protein 159	AK171378|Tmem159|233806|transmembrane protein 159
mm9_v1_chr2_-_167174531_167174736	0.574129	AGUGCAA	AF142673|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	NM_019835|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	AB004786|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
mm9_v1_chr8_+_63111621_63111675	0.567279	AGUGCAA	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr4_-_140634151_140634281	0.561327	AGUGCAA	AK197123|Necap2|66147|NECAP endocytosis associated 2	AK213029|Necap2|66147|NECAP endocytosis associated 2	AK218572|Necap2|66147|NECAP endocytosis associated 2	AK003463|Necap2|66147|NECAP endocytosis associated 2	AK172538|Necap2|66147|NECAP endocytosis associated 2	AK156566|Necap2|66147|NECAP endocytosis associated 2	AK170987|Necap2|66147|NECAP endocytosis associated 2	AK145874|Necap2|66147|NECAP endocytosis associated 2	AK155871|Necap2|66147|NECAP endocytosis associated 2	BC037069|Necap2|66147|NECAP endocytosis associated 2	NM_025383|Necap2|66147|NECAP endocytosis associated 2
mm9_v1_chr9_-_42913797_42913909	0.560545	AGUGCAA	AK009331|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	AK122267|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12	NM_027144|Arhgef12|69632|Rho guanine nucleotide exchange factor (GEF) 12
mm9_v1_chr11_-_106128935_106128945	0.546051	AGUGCAA	BC005732|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_031878|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr9_+_30838224_30838249	0.543567	AGUGCAA	AK036895|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_001115130|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_172765|Zbtb44|235132|zinc finger and BTB domain containing 44
mm9_v1_chr13_-_105844882_105845009	0.539799	AGUGCAA	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chrX_-_103124651_103124717	0.53427	AGUGCAA	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr11_+_69579376_69579461	0.532826	AGUGCAA	AK163593|Zbtb4|75580|zinc finger and BTB domain containing 4	NM_029348|Zbtb4|75580|zinc finger and BTB domain containing 4	AK147212|Zbtb4|75580|zinc finger and BTB domain containing 4
mm9_v1_chr15_+_80541675_80541764	0.528732	AGUGCAA	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr8_+_41509109_41509241	0.516975	AGUGCAA	AK030662|Zdhhc2|70546|zinc finger, DHHC domain containing 2	NM_178395|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK136296|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK046533|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK044652|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC117761|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC127156|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK018284|Zdhhc2|70546|zinc finger, DHHC domain containing 2
mm9_v1_chr10_+_40069113_40069226	0.513296	AGUGCAA	AK122421|Cdk19|78334|cyclin-dependent kinase 19	NM_001168304|Cdk19|78334|cyclin-dependent kinase 19	NM_198164|Cdk19|78334|cyclin-dependent kinase 19	AK053651|Cdk19|78334|cyclin-dependent kinase 19	BC137614|Cdk19|78334|cyclin-dependent kinase 19	BC144782|Cdk19|78334|cyclin-dependent kinase 19	BC080280|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr13_+_113254277_113254381	0.504271	AGUGCAA	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chr16_-_91597886_91597995	0.493843	AGUGCAA	AK098154|Tmem50b|77975|transmembrane protein 50B	AK150773|Tmem50b|77975|transmembrane protein 50B	AK172335|Tmem50b|77975|transmembrane protein 50B	AK170684|Tmem50b|77975|transmembrane protein 50B	BC004841|Tmem50b|77975|transmembrane protein 50B	NM_030018|Tmem50b|77975|transmembrane protein 50B	AK020977|Tmem50b|77975|transmembrane protein 50B	AK152190|Tmem50b|77975|transmembrane protein 50B	AK152767|Tmem50b|77975|transmembrane protein 50B	AK133966|Tmem50b|77975|transmembrane protein 50B	AK151796|Tmem50b|77975|transmembrane protein 50B	AK155082|Tmem50b|77975|transmembrane protein 50B
mm9_v1_chr7_-_112781902_112782053	0.493709	AGUGCAA	BC003347|Trim3|55992|tripartite motif-containing 3	AF220019|Trim3|55992|tripartite motif-containing 3	AK144674|Trim3|55992|tripartite motif-containing 3	NM_018880|Trim3|55992|tripartite motif-containing 3	AK170029|Trim3|55992|tripartite motif-containing 3	BC034263|Trim3|55992|tripartite motif-containing 3	AK019165|Trim3|55992|tripartite motif-containing 3
mm9_v1_chr4_+_102787069_102787071	0.485066	AGUGCAA	BC043930|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	NM_027696|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK129405|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis
mm9_v1_chr5_-_74038829_74039027	0.483833	AGUGCAA	BC052349|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK017781|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK169403|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	NM_011890|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AB024921|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK014381|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK132306|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)
mm9_v1_chr5_+_75971011_75971052	0.476088	AGUGCAA	NM_001122733|Kit|16590|kit oncogene	NM_021099|Kit|16590|kit oncogene	AK046795|Kit|16590|kit oncogene	AK047010|Kit|16590|kit oncogene	BC026713|Kit|16590|kit oncogene	BC075716|Kit|16590|kit oncogene	BC052457|Kit|16590|kit oncogene	Y00864|Kit|16590|kit oncogene	AY536430|Kit|16590|kit oncogene	AY536431|Kit|16590|kit oncogene
mm9_v1_chr17_-_66426361_66426428	0.469559	AGUGCAA	AK153850|Ankrd12|106585|ankyrin repeat domain 12	BC094292|Ankrd12|106585|ankyrin repeat domain 12	BC050185|Ankrd12|106585|ankyrin repeat domain 12	BC080825|Ankrd12|106585|ankyrin repeat domain 12	BC064777|Ankrd12|106585|ankyrin repeat domain 12	AK012645|Ankrd12|106585|ankyrin repeat domain 12	AK133715|Ankrd12|106585|ankyrin repeat domain 12	NM_001025572|Ankrd12|106585|ankyrin repeat domain 12	AK013457|Ankrd12|106585|ankyrin repeat domain 12
mm9_v1_chr14_-_78936606_78936676	0.457135	AGUGCAA	NM_001164503|Akap11|219181|A kinase (PRKA) anchor protein 11
mm9_v1_chr14_+_8930682_8930828	0.457101	AGUGCAA	AK150660|Pxk|218699|PX domain containing serine/threonine kinase	AK147037|Pxk|218699|PX domain containing serine/threonine kinase	AK172463|Pxk|218699|PX domain containing serine/threonine kinase	NM_145458|Pxk|218699|PX domain containing serine/threonine kinase	NM_178279|Pxk|218699|PX domain containing serine/threonine kinase	AK170361|Pxk|218699|PX domain containing serine/threonine kinase	AK157364|Pxk|218699|PX domain containing serine/threonine kinase	AK150337|Pxk|218699|PX domain containing serine/threonine kinase	AK150413|Pxk|218699|PX domain containing serine/threonine kinase	BC016131|Pxk|218699|PX domain containing serine/threonine kinase	AK156146|Pxk|218699|PX domain containing serine/threonine kinase	AK169565|Pxk|218699|PX domain containing serine/threonine kinase	AK048910|Pxk|218699|PX domain containing serine/threonine kinase	AK151098|Pxk|218699|PX domain containing serine/threonine kinase	AK152058|Pxk|218699|PX domain containing serine/threonine kinase	AK152789|Pxk|218699|PX domain containing serine/threonine kinase	AK153067|Pxk|218699|PX domain containing serine/threonine kinase	AK169112|Pxk|218699|PX domain containing serine/threonine kinase	AK028501|Pxk|218699|PX domain containing serine/threonine kinase	AK172347|Pxk|218699|PX domain containing serine/threonine kinase	AK166036|Pxk|218699|PX domain containing serine/threonine kinase	DQ095196|Pxk|218699|PX domain containing serine/threonine kinase	DQ095197|Pxk|218699|PX domain containing serine/threonine kinase
mm9_v1_chr3_-_152003317_152003373	0.440253	AGUGCAA	BC138328|Fam73a|215708|family with sequence similarity 73, member A	BC138329|Fam73a|215708|family with sequence similarity 73, member A	AK166051|Fam73a|215708|family with sequence similarity 73, member A	BC059928|Fam73a|215708|family with sequence similarity 73, member A	AK044739|Fam73a|215708|family with sequence similarity 73, member A	BC098205|Fam73a|215708|family with sequence similarity 73, member A	AK045347|Fam73a|215708|family with sequence similarity 73, member A	AK143366|Fam73a|215708|family with sequence similarity 73, member A	AK085017|Fam73a|215708|family with sequence similarity 73, member A	NM_001162375|Fam73a|215708|family with sequence similarity 73, member A	NM_174868|Fam73a|215708|family with sequence similarity 73, member A
mm9_v1_chr7_-_17200285_17200343	0.439593	AGUGCAA	BC139459|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	BC139461|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147326|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147688|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	NM_172739|Grlf1|232906|glucocorticoid receptor DNA binding factor 1
mm9_v1_chr5_-_25004598_25004626	0.431148	AGUGCAA	AK044828|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	NM_001081383|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	AK087368|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr4_+_109015660_109015680	0.429378	AGUGCAA	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr1_-_163061538_163061643	0.425337	AGUGCAA	BC060183|Klhl20|226541|kelch-like 20 (Drosophila)	AK053102|Klhl20|226541|kelch-like 20 (Drosophila)	AK053371|Klhl20|226541|kelch-like 20 (Drosophila)	AK054169|Klhl20|226541|kelch-like 20 (Drosophila)	BC019571|Klhl20|226541|kelch-like 20 (Drosophila)	AK220547|Klhl20|226541|kelch-like 20 (Drosophila)	NM_001039482|Klhl20|226541|kelch-like 20 (Drosophila)
mm9_v1_chr11_+_97524725_97524725	0.422445	AGUGCAA	NM_139311|Mllt6|246198|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm9_v1_chr8_-_37676995_37677010	0.417564	AGUGCAA	AK162413|Dlc1|50768|deleted in liver cancer 1	NM_015802|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr11_-_103128675_103128714	0.415198	AGUGCAA	BC107015|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	AK172518|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	AK036200|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14	NM_016896|Map3k14|53859|mitogen-activated protein kinase kinase kinase 14
mm9_v1_chr2_+_112219335_112219462	0.412612	AGUGCAA	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chrX_+_50341236_50341389	0.409198	AGUGCAA	NM_013556|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase	AK002286|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase	AK146626|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase	J00423|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase	BC004686|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase	AK082827|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase	AK088114|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase	BC083145|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase
mm9_v1_chr13_-_19711409_19711707	0.405149	AGUGCAA	DQ914440|Epdr1|105298|ependymin related protein 1 (zebrafish)	AF353717|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK192851|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK160413|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK166252|Epdr1|105298|ependymin related protein 1 (zebrafish)	BC014708|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK034083|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK038733|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK046185|Epdr1|105298|ependymin related protein 1 (zebrafish)	NM_134065|Epdr1|105298|ependymin related protein 1 (zebrafish)
mm9_v1_chr4_-_126106749_126106807	0.404876	AGUGCAA	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr4_+_101091913_101091947	0.404792	AGUGCAA	NM_001177605|Ak4|11639|adenylate kinase 4	AK154374|Ak4|11639|adenylate kinase 4	NM_001177604|Ak4|11639|adenylate kinase 4
mm9_v1_chr6_+_143115732_143115821	0.401152	AGUGCAA	AK051039|Etnk1|75320|ethanolamine kinase 1	AK044502|Etnk1|75320|ethanolamine kinase 1	NM_029250|Etnk1|75320|ethanolamine kinase 1	AK016135|Etnk1|75320|ethanolamine kinase 1	AK031560|Etnk1|75320|ethanolamine kinase 1	AK033268|Etnk1|75320|ethanolamine kinase 1	AK164928|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr1_+_89652645_89652774	0.397454	AGUGCAA	AK030983|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	NM_029846|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK145673|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK155358|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK163246|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK170073|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	BC049122|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK048873|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AK005181|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087879|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087880|Atg16l1|77040|autophagy-related 16-like 1 (yeast)	AB087881|Atg16l1|77040|autophagy-related 16-like 1 (yeast)
mm9_v1_chr17_-_66868909_66869045	0.395382	AGUGCAA	AB232607|Rab12|19328|RAB12, member RAS oncogene family	NM_024448|Rab12|19328|RAB12, member RAS oncogene family
mm9_v1_chr10_-_20880559_20880789	0.394696	AGUGCAA	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr11_+_53583515_53583660	0.384422	AGUGCAA	NM_001159393|Irf1|16362|interferon regulatory factor 1	NM_008390|Irf1|16362|interferon regulatory factor 1	AK152005|Irf1|16362|interferon regulatory factor 1	AK152193|Irf1|16362|interferon regulatory factor 1	AK153514|Irf1|16362|interferon regulatory factor 1	AK155983|Irf1|16362|interferon regulatory factor 1	AK152104|Irf1|16362|interferon regulatory factor 1	AK157347|Irf1|16362|interferon regulatory factor 1	M21065|Irf1|16362|interferon regulatory factor 1	AY225160|Irf1|16362|interferon regulatory factor 1
mm9_v1_chr7_-_125635435_125635488	0.379086	AGUGCAA	AK134593|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK137678|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	NM_001033380|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr13_+_81022644_81022695	0.37571	AGUGCAA	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr18_-_38760921_38761068	0.373141	AGUGCAA	BC050944|Spry4|24066|sprouty homolog 4 (Drosophila)	BC057005|Spry4|24066|sprouty homolog 4 (Drosophila)	NM_011898|Spry4|24066|sprouty homolog 4 (Drosophila)	AK139816|Spry4|24066|sprouty homolog 4 (Drosophila)	AB019280|Spry4|24066|sprouty homolog 4 (Drosophila)	AK037180|Spry4|24066|sprouty homolog 4 (Drosophila)	AK048122|Spry4|24066|sprouty homolog 4 (Drosophila)	AF176906|Spry4|24066|sprouty homolog 4 (Drosophila)
mm9_v1_chr10_+_13686174_13686209	0.368224	AGUGCAA	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr5_-_3803095_3803144	0.365768	AGUGCAA	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr5_-_92512486_92512611	0.361993	AGUGCAA	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr16_+_33380860_33381006	0.352466	AGUGCAA	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr3_-_9610062_9610137	0.34965	AGUGCAA	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr6_+_49269351_49269403	0.348017	AGUGCAA	AK018135|Ccdc126|57895|coiled-coil domain containing 126	NM_175098|Ccdc126|57895|coiled-coil domain containing 126	BC117837|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr5_-_53604673_53604743	0.346089	AGUGCAA	AK122362|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)	NM_172710|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr5_-_31597792_31598351	0.341577	AGUGCAA	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr10_+_39089594_39089612	0.339047	AGUGCAA	AK156584|Fyn|14360|Fyn proto-oncogene	AK171646|Fyn|14360|Fyn proto-oncogene	NM_001122892|Fyn|14360|Fyn proto-oncogene	NM_001122893|Fyn|14360|Fyn proto-oncogene	NM_008054|Fyn|14360|Fyn proto-oncogene	BC092217|Fyn|14360|Fyn proto-oncogene
mm9_v1_chr11_-_28484265_28484323	0.338886	AGUGCAA	AK087049|Ccdc85a|216613|coiled-coil domain containing 85A	AK087070|Ccdc85a|216613|coiled-coil domain containing 85A	AK045568|Ccdc85a|216613|coiled-coil domain containing 85A	NM_001166661|Ccdc85a|216613|coiled-coil domain containing 85A	NM_001166662|Ccdc85a|216613|coiled-coil domain containing 85A	NM_181577|Ccdc85a|216613|coiled-coil domain containing 85A	AK173298|Ccdc85a|216613|coiled-coil domain containing 85A
mm9_v1_chr6_-_71390592_71390638	0.337144	AGUGCAA	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr4_+_108292534_108292631	0.335492	AGUGCAA	AK146601|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK043839|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	NM_177045|Cc2d1b|319965|coiled-coil and C2 domain containing 1B	AK148162|Cc2d1b|319965|coiled-coil and C2 domain containing 1B
mm9_v1_chr12_+_112812710_112812750	0.318291	AGUGCAA	AK083683|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	NM_021516|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	NM_022801|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	AK166157|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	AK132247|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	BC066071|Mark3|17169|MAP/microtubule affinity-regulating kinase 3
mm9_v1_chr11_+_52045464_52045596	0.312466	AGUGCAA	NM_011543|Skp1a|21402|S-phase kinase-associated protein 1A	AK078330|Skp1a|21402|S-phase kinase-associated protein 1A	AK002983|Skp1a|21402|S-phase kinase-associated protein 1A	AK012498|Skp1a|21402|S-phase kinase-associated protein 1A	AK014245|Skp1a|21402|S-phase kinase-associated protein 1A	AK027909|Skp1a|21402|S-phase kinase-associated protein 1A	AK088339|Skp1a|21402|S-phase kinase-associated protein 1A	AK160198|Skp1a|21402|S-phase kinase-associated protein 1A	AK158209|Skp1a|21402|S-phase kinase-associated protein 1A	AK166673|Skp1a|21402|S-phase kinase-associated protein 1A	AK152609|Skp1a|21402|S-phase kinase-associated protein 1A	Z47088|Skp1a|21402|S-phase kinase-associated protein 1A	BC002115|Skp1a|21402|S-phase kinase-associated protein 1A	AF083214|Skp1a|21402|S-phase kinase-associated protein 1A
mm9_v1_chr2_+_80478960_80478972	0.312428	AGUGCAA	NM_027091|Nup35|69482|nucleoporin 35	AK089997|Nup35|69482|nucleoporin 35
mm9_v1_chr14_-_27783615_27783757	0.303205	AGUGCAA	AK030445|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK045438|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK088080|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AY113705|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK033566|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK146356|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK049307|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	NM_145221|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	BC063751|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm9_v1_chr12_+_81891479_81891592	0.299622	AGUGCAA	AK030233|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK161132|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK143867|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	BC040401|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	NM_178682|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK151939|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK152820|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK164823|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr4_-_94269846_94269942	0.29834	AGUGCAA	BC139773|Plaa|18786|phospholipase A2, activating protein	AK075934|Plaa|18786|phospholipase A2, activating protein	BC139355|Plaa|18786|phospholipase A2, activating protein	BC139356|Plaa|18786|phospholipase A2, activating protein	NM_172695|Plaa|18786|phospholipase A2, activating protein	AK019070|Plaa|18786|phospholipase A2, activating protein
mm9_v1_chr5_-_124875921_124875965	0.291509	AGUGCAA	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chrX_+_100551808_100551914	0.289959	AGUGCAA	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr10_-_92773778_92773948	0.288279	AGUGCAA	Z32815|Elk3|13713|ELK3, member of ETS oncogene family	L19953|Elk3|13713|ELK3, member of ETS oncogene family	BC005686|Elk3|13713|ELK3, member of ETS oncogene family	NM_013508|Elk3|13713|ELK3, member of ETS oncogene family
mm9_v1_chr2_-_160192799_160192833	0.287328	AGUGCAA	AK132425|Mafb|16658|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	NM_010658|Mafb|16658|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	AK143209|Mafb|16658|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm9_v1_chr11_-_61668486_61668601	0.287002	AGUGCAA	AF145922|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC046778|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC053029|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146620|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK122331|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146893|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK148142|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	NM_013881|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)
mm9_v1_chr2_+_49307005_49307084	0.284681	AGUGCAA	NM_172663|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)	AK031025|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)
mm9_v1_chr6_-_94650118_94650173	0.282269	AGUGCAA	D78572|Lrig1|16206|leucine-rich repeats and immunoglobulin-like domains 1	NM_008377|Lrig1|16206|leucine-rich repeats and immunoglobulin-like domains 1
mm9_v1_chr18_-_84255781_84255953	0.280499	AGUGCAA	BC040215|Tshz1|110796|teashirt zinc finger family member 1	AK220545|Tshz1|110796|teashirt zinc finger family member 1	AK152140|Tshz1|110796|teashirt zinc finger family member 1	NM_001081300|Tshz1|110796|teashirt zinc finger family member 1
mm9_v1_chr10_+_114822009_114822046	0.279106	AGUGCAA	AK145652|Zfc3h1|216345|zinc finger, C3H1-type containing	NM_001033261|Zfc3h1|216345|zinc finger, C3H1-type containing
mm9_v1_chr2_-_173102033_173102038	0.278328	AGUGCAA	AK008976|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	AK136450|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	NM_022995|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr5_+_102194126_102194174	0.278007	AGUGCAA	BC055292|Cds1|74596|CDP-diacylglycerol synthase 1	NM_173370|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr3_-_94386590_94386623	0.275509	AGUGCAA	AK147452|Snx27|76742|sorting nexin family member 27	NM_001082484|Snx27|76742|sorting nexin family member 27	NM_029721|Snx27|76742|sorting nexin family member 27
mm9_v1_chr8_-_26311823_26311983	0.273033	AGUGCAA	BC125389|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	BC145709|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK037910|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK138513|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK046384|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177412|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177413|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_177089|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_199323|Tacc1|320165|transforming, acidic coiled-coil containing protein 1
mm9_v1_chrX_+_158154967_158155000	0.270996	AGUGCAA	NM_001103367|Rai2|24004|retinoic acid induced 2	AK143442|Rai2|24004|retinoic acid induced 2
mm9_v1_chr17_-_10512217_10512250	0.270644	AGUGCAA	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr3_-_88229007_88229060	0.268425	AGUGCAA	BC052771|Slc25a44|229517|solute carrier family 25, member 44	AK166331|Slc25a44|229517|solute carrier family 25, member 44	AK169886|Slc25a44|229517|solute carrier family 25, member 44	AK044648|Slc25a44|229517|solute carrier family 25, member 44	AK046586|Slc25a44|229517|solute carrier family 25, member 44	AK079532|Slc25a44|229517|solute carrier family 25, member 44	AK165159|Slc25a44|229517|solute carrier family 25, member 44	AK083470|Slc25a44|229517|solute carrier family 25, member 44	AK083273|Slc25a44|229517|solute carrier family 25, member 44	AK144731|Slc25a44|229517|solute carrier family 25, member 44	AK166011|Slc25a44|229517|solute carrier family 25, member 44	AK168955|Slc25a44|229517|solute carrier family 25, member 44	AK032960|Slc25a44|229517|solute carrier family 25, member 44	AK134914|Slc25a44|229517|solute carrier family 25, member 44	NM_001145876|Slc25a44|229517|solute carrier family 25, member 44	NM_001145877|Slc25a44|229517|solute carrier family 25, member 44	NM_178696|Slc25a44|229517|solute carrier family 25, member 44
mm9_v1_chr13_-_64254466_64254592	0.265766	AGUGCAA	BC119531|Zfp367|238673|zinc finger protein 367	BC119532|Zfp367|238673|zinc finger protein 367	AK033288|Zfp367|238673|zinc finger protein 367	NM_175494|Zfp367|238673|zinc finger protein 367	AK041331|Zfp367|238673|zinc finger protein 367	AK041361|Zfp367|238673|zinc finger protein 367	AK077686|Zfp367|238673|zinc finger protein 367
mm9_v1_chr2_-_25978328_25978339	0.260552	AGUGCAA	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr14_+_49791899_49792002	0.259889	AGUGCAA	NM_001081430|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	AK015640|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC157931|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC158065|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC172029|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm9_v1_chr6_-_119798116_119798193	0.256122	AGUGCAA	AK053824|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK035989|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK048990|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340028|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340029|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_053204|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_178085|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1
mm9_v1_chr18_+_11816327_11816379	0.24594	AGUGCAA	NM_001081223|Rbbp8|225182|retinoblastoma binding protein 8
mm9_v1_chr2_+_57090707_57090899	0.243666	AGUGCAA	BC021359|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_010274|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK167152|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	U60987|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK034353|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK151189|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	D50430|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr18_+_14941735_14941757	0.24092	AGUGCAA	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr4_+_151470827_151470883	0.237934	AGUGCAA	AY605057|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	AY605058|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5	NM_001004156|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm9_v1_chr10_-_94879435_94879509	0.228525	AGUGCAA	AK160537|Socs2|216233|suppressor of cytokine signaling 2	AK162591|Socs2|216233|suppressor of cytokine signaling 2	BC106153|Socs2|216233|suppressor of cytokine signaling 2	NM_007706|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr9_+_65756816_65756864	0.227954	AGUGCAA	AK090262|Csnk1g1|214897|casein kinase 1, gamma 1	NM_173185|Csnk1g1|214897|casein kinase 1, gamma 1	AK050473|Csnk1g1|214897|casein kinase 1, gamma 1	AK149310|Csnk1g1|214897|casein kinase 1, gamma 1
mm9_v1_chr18_-_53904193_53904270	0.227304	AGUGCAA	AK044952|Cep120|225523|centrosomal protein 120	BC053439|Cep120|225523|centrosomal protein 120	NM_178686|Cep120|225523|centrosomal protein 120	AK089236|Cep120|225523|centrosomal protein 120	AK089242|Cep120|225523|centrosomal protein 120	AK044808|Cep120|225523|centrosomal protein 120	AK079319|Cep120|225523|centrosomal protein 120	AK047594|Cep120|225523|centrosomal protein 120	AK038916|Cep120|225523|centrosomal protein 120
mm9_v1_chr12_-_4484059_4484074	0.226379	AGUGCAA	NM_010881|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr11_-_88922061_88922089	0.226198	AGUGCAA	AK147841|Dgke|56077|diacylglycerol kinase, epsilon	NM_019505|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr4_+_101091875_101091893	0.21817	AGUGCAA	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr11_-_40506062_40506146	0.212783	AGUGCAA	BC003457|Mat2b|108645|methionine adenosyltransferase II, beta	NM_134017|Mat2b|108645|methionine adenosyltransferase II, beta	AK038303|Mat2b|108645|methionine adenosyltransferase II, beta	AK153126|Mat2b|108645|methionine adenosyltransferase II, beta	AB070267|Mat2b|108645|methionine adenosyltransferase II, beta
mm9_v1_chr5_-_76733540_76733585	0.208614	AGUGCAA	AF000998|Clock|12753|circadian locomotor output cycles kaput	NM_007715|Clock|12753|circadian locomotor output cycles kaput
mm9_v1_chr4_+_126431013_126431096	0.208438	AGUGCAA	NM_001035526|AU040320|100317|expressed sequence AU040320	NM_133886|AU040320|100317|expressed sequence AU040320	BC028869|AU040320|100317|expressed sequence AU040320	AK163033|AU040320|100317|expressed sequence AU040320	AK170261|AU040320|100317|expressed sequence AU040320	AK043006|AU040320|100317|expressed sequence AU040320	AK007704|AU040320|100317|expressed sequence AU040320	AK031342|AU040320|100317|expressed sequence AU040320
mm9_v1_chr7_-_140004777_140004878	0.204004	AGUGCAA	AK156629|Fam53b|77938|family with sequence similarity 53, member B	AK051299|Fam53b|77938|family with sequence similarity 53, member B	NM_212473|Fam53b|77938|family with sequence similarity 53, member B
mm9_v1_chr15_+_38837839_38837957	0.203272	AGUGCAA	NM_008056|Fzd6|14368|frizzled homolog 6 (Drosophila)	BC026150|Fzd6|14368|frizzled homolog 6 (Drosophila)	AK088399|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr1_+_107560433_107560513	0.198387	AGUGCAA	AK035724|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_029349|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_173187|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK148005|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC051567|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117950|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117949|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK009628|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene
mm9_v1_chr8_+_107694536_107694875	0.194642	AGUGCAA	AK089094|Cbfb|12400|core binding factor beta	NM_001161456|Cbfb|12400|core binding factor beta	NM_001161457|Cbfb|12400|core binding factor beta	NM_001161458|Cbfb|12400|core binding factor beta	NM_022309|Cbfb|12400|core binding factor beta	D14570|Cbfb|12400|core binding factor beta	D14571|Cbfb|12400|core binding factor beta	D14572|Cbfb|12400|core binding factor beta	BC026749|Cbfb|12400|core binding factor beta	BC040752|Cbfb|12400|core binding factor beta	BC006763|Cbfb|12400|core binding factor beta	L03305|Cbfb|12400|core binding factor beta	L03306|Cbfb|12400|core binding factor beta
mm9_v1_chr2_+_62502329_62502489	0.19253	AGUGCAA	AK046347|Gca|227960|grancalcin	AK050540|Gca|227960|grancalcin	AK033740|Gca|227960|grancalcin	AK040549|Gca|227960|grancalcin	AK049317|Gca|227960|grancalcin	AK078915|Gca|227960|grancalcin	NM_145523|Gca|227960|grancalcin	AF518325|Gca|227960|grancalcin	BC021450|Gca|227960|grancalcin	AB088388|Gca|227960|grancalcin
mm9_v1_chr5_-_33196860_33196908	0.190985	AGUGCAA	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr19_+_7568894_7569107	0.190246	AGUGCAA	NM_146091|Atl3|109168|atlastin GTPase 3	AK147720|Atl3|109168|atlastin GTPase 3	AK170550|Atl3|109168|atlastin GTPase 3	AK077752|Atl3|109168|atlastin GTPase 3	AK028842|Atl3|109168|atlastin GTPase 3	AK030660|Atl3|109168|atlastin GTPase 3	AK169476|Atl3|109168|atlastin GTPase 3	BC017138|Atl3|109168|atlastin GTPase 3	AK014617|Atl3|109168|atlastin GTPase 3
mm9_v1_chr17_-_74694120_74694227	0.185782	AGUGCAA	AK159560|Memo1|76890|mediator of cell motility 1	AK053089|Memo1|76890|mediator of cell motility 1	NM_133771|Memo1|76890|mediator of cell motility 1
mm9_v1_chr4_+_108952859_108952895	0.185345	AGUGCAA	NM_007943|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr1_-_13579885_13579986	0.184353	AGUGCAA	AK168708|Tram1|72265|translocating chain-associating membrane protein 1	AK151240|Tram1|72265|translocating chain-associating membrane protein 1	AK152343|Tram1|72265|translocating chain-associating membrane protein 1	AK152991|Tram1|72265|translocating chain-associating membrane protein 1	AK150777|Tram1|72265|translocating chain-associating membrane protein 1	BC012401|Tram1|72265|translocating chain-associating membrane protein 1	AK145291|Tram1|72265|translocating chain-associating membrane protein 1	AK146207|Tram1|72265|translocating chain-associating membrane protein 1	AK088814|Tram1|72265|translocating chain-associating membrane protein 1	AK142658|Tram1|72265|translocating chain-associating membrane protein 1	AK155905|Tram1|72265|translocating chain-associating membrane protein 1	AK159203|Tram1|72265|translocating chain-associating membrane protein 1	AK159350|Tram1|72265|translocating chain-associating membrane protein 1	NM_028173|Tram1|72265|translocating chain-associating membrane protein 1	AK150551|Tram1|72265|translocating chain-associating membrane protein 1	AK151409|Tram1|72265|translocating chain-associating membrane protein 1	AK151664|Tram1|72265|translocating chain-associating membrane protein 1	AK152338|Tram1|72265|translocating chain-associating membrane protein 1	AK153379|Tram1|72265|translocating chain-associating membrane protein 1	AK028304|Tram1|72265|translocating chain-associating membrane protein 1	AK159878|Tram1|72265|translocating chain-associating membrane protein 1
mm9_v1_chrX_-_148777014_148777028	0.182588	AGUGCAA	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr11_+_78002249_78002305	0.181931	AGUGCAA	NM_033475|Rab34|19376|RAB34, member of RAS oncogene family	BC028481|Rab34|19376|RAB34, member of RAS oncogene family	AK160308|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr11_-_84953442_84953491	0.181922	AGUGCAA	AK170234|Usp32|237898|ubiquitin specific peptidase 32	AK148221|Usp32|237898|ubiquitin specific peptidase 32	NM_001029934|Usp32|237898|ubiquitin specific peptidase 32
mm9_v1_chr19_-_3575695_3575758	0.178122	AGUGCAA	AK129392|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK088526|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	BC008529|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK035236|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK015925|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK018652|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_001164159|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_028999|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_029456|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3
mm9_v1_chr5_-_143874629_143874716	0.177309	AGUGCAA	AK089775|Rnf216|108086|ring finger protein 216	AK090306|Rnf216|108086|ring finger protein 216	AK147861|Rnf216|108086|ring finger protein 216	AK149741|Rnf216|108086|ring finger protein 216	AK154368|Rnf216|108086|ring finger protein 216	BC065066|Rnf216|108086|ring finger protein 216	NM_080561|Rnf216|108086|ring finger protein 216	NM_207110|Rnf216|108086|ring finger protein 216
mm9_v1_chr14_+_31528800_31528932	0.175293	AGUGCAA	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr11_+_20101587_20101632	0.174795	AGUGCAA	AF226873|Rab1|19324|RAB1, member RAS oncogene family	NM_008996|Rab1|19324|RAB1, member RAS oncogene family	AB232583|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr12_+_85455277_85455306	0.173249	AGUGCAA	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr10_+_19868725_19868819	0.171258	AGUGCAA	NM_001198635|Mtap7|17761|microtubule-associated protein 7	NM_008635|Mtap7|17761|microtubule-associated protein 7	BC052637|Mtap7|17761|microtubule-associated protein 7	BC042771|Mtap7|17761|microtubule-associated protein 7	BC044733|Mtap7|17761|microtubule-associated protein 7	BC046555|Mtap7|17761|microtubule-associated protein 7	AK008182|Mtap7|17761|microtubule-associated protein 7	AK014575|Mtap7|17761|microtubule-associated protein 7	AB098611|Mtap7|17761|microtubule-associated protein 7	Y15197|Mtap7|17761|microtubule-associated protein 7
mm9_v1_chrX_+_99044723_99044723	0.1702	AGUGCAA	AK142977|Nhsl2|100042480|NHS-like 2	NM_001163610|Nhsl2|100042480|NHS-like 2
mm9_v1_chr9_-_42280256_42280323	0.169479	AGUGCAA	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr5_-_151992724_151992782	0.168443	AGUGCAA	AK148227|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	AK050259|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_001163493|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_146258|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	BC027830|Stard13|243362|StAR-related lipid transfer (START) domain containing 13
mm9_v1_chr12_-_73509925_73510040	0.167249	AGUGCAA	NM_153457|Rtn1|104001|reticulon 1	AK132364|Rtn1|104001|reticulon 1
mm9_v1_chr12_+_113052385_113052495	0.166483	AGUGCAA	AK171099|Zfyve21|68520|zinc finger, FYVE domain containing 21	AK139356|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC019521|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC132248|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC132250|Zfyve21|68520|zinc finger, FYVE domain containing 21	NM_026752|Zfyve21|68520|zinc finger, FYVE domain containing 21	AK003661|Zfyve21|68520|zinc finger, FYVE domain containing 21
mm9_v1_chr11_-_116714406_116714411	0.166308	AGUGCAA	AK165670|Srsf2|20382|serine/arginine-rich splicing factor 2	NM_011358|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr13_-_43399540_43399575	0.164935	AGUGCAA	AK147458|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1	NM_001033399|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1
mm9_v1_chrX_+_158155484_158155558	0.162427	AGUGCAA	NM_198409|Rai2|24004|retinoic acid induced 2	BC061184|Rai2|24004|retinoic acid induced 2
mm9_v1_chr9_+_72380046_72380064	0.161857	AGUGCAA	AK090370|Rfx7|319758|regulatory factor X, 7	NM_001033536|Rfx7|319758|regulatory factor X, 7	AK144999|Rfx7|319758|regulatory factor X, 7
mm9_v1_chr1_-_54251877_54252011	0.159941	AGUGCAA	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr14_-_75347637_75347721	0.156454	AGUGCAA	AK129264|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	AK143909|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1	NM_001033439|Lrch1|380916|leucine-rich repeats and calponin homology (CH) domain containing 1
mm9_v1_chr10_-_79850388_79850445	0.155726	AGUGCAA	NM_198615|Mex3d|237400|mex3 homolog D (C. elegans)
mm9_v1_chr15_-_44619541_44619608	0.153996	AGUGCAA	AK049811|Sybu|319613|syntabulin (syntaxin-interacting)	AK047449|Sybu|319613|syntabulin (syntaxin-interacting)	AB232447|Sybu|319613|syntabulin (syntaxin-interacting)	AB232448|Sybu|319613|syntabulin (syntaxin-interacting)	AK043739|Sybu|319613|syntabulin (syntaxin-interacting)	NM_001032727|Sybu|319613|syntabulin (syntaxin-interacting)	NM_176998|Sybu|319613|syntabulin (syntaxin-interacting)
mm9_v1_chr2_+_13995715_13995918	0.152248	AGUGCAA	AK144987|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK169170|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	BC044666|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	NM_011484|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK157767|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK162431|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK163720|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	BC055326|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK163922|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK035924|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK147832|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	U43900|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	AK179759|Stam|20844|signal transducing adaptor molecule (SH3 domain and ITAM motif) 1
mm9_v1_chr5_+_75548309_75548318	0.152025	AGUGCAA	NM_011058|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK081664|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr4_-_148800731_148800857	0.147224	AGUGCAA	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr8_-_26864721_26864754	0.143954	AGUGCAA	AK008529|Ddhd2|72108|DDHD domain containing 2	AK196094|Ddhd2|72108|DDHD domain containing 2	NM_028102|Ddhd2|72108|DDHD domain containing 2	AK039979|Ddhd2|72108|DDHD domain containing 2
mm9_v1_chrX_-_133403050_133403118	0.142279	AGUGCAA	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr16_+_16983461_16983497	0.138866	AGUGCAA	AK048127|Mapk1|26413|mitogen-activated protein kinase 1	NM_001038663|Mapk1|26413|mitogen-activated protein kinase 1	NM_011949|Mapk1|26413|mitogen-activated protein kinase 1	AK132241|Mapk1|26413|mitogen-activated protein kinase 1	AK148853|Mapk1|26413|mitogen-activated protein kinase 1	AK087925|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr6_-_92164804_92164868	0.135595	AGUGCAA	BC049106|Zfyve20|78287|zinc finger, FYVE domain containing 20	NM_030081|Zfyve20|78287|zinc finger, FYVE domain containing 20	AK019909|Zfyve20|78287|zinc finger, FYVE domain containing 20	BC017622|Zfyve20|78287|zinc finger, FYVE domain containing 20
mm9_v1_chr17_-_75951137_75951285	0.13501	AGUGCAA	AK167224|Fam98a|72722|family with sequence similarity 98, member A	BC004626|Fam98a|72722|family with sequence similarity 98, member A	AK146955|Fam98a|72722|family with sequence similarity 98, member A	AK046481|Fam98a|72722|family with sequence similarity 98, member A	AK012997|Fam98a|72722|family with sequence similarity 98, member A	AK146215|Fam98a|72722|family with sequence similarity 98, member A	AK146761|Fam98a|72722|family with sequence similarity 98, member A	NM_133747|Fam98a|72722|family with sequence similarity 98, member A
mm9_v1_chr9_-_88376937_88377419	0.130684	AGUGCAA	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr14_+_119337150_119337225	0.130378	AGUGCAA	NM_008929|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	AK146097|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	AK148270|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	BC013766|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3	U28423|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3
mm9_v1_chr6_+_122258946_122259119	0.126438	AGUGCAA	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr14_-_51550327_51550600	0.124834	AGUGCAA	BC049945|Tmem55b|219024|transmembrane protein 55b	BC039161|Tmem55b|219024|transmembrane protein 55b	BC058171|Tmem55b|219024|transmembrane protein 55b	BC106163|Tmem55b|219024|transmembrane protein 55b	AK152640|Tmem55b|219024|transmembrane protein 55b	AK152658|Tmem55b|219024|transmembrane protein 55b	AK144251|Tmem55b|219024|transmembrane protein 55b	NM_001033271|Tmem55b|219024|transmembrane protein 55b	AK159641|Tmem55b|219024|transmembrane protein 55b	AK169026|Tmem55b|219024|transmembrane protein 55b	BC027355|Tmem55b|219024|transmembrane protein 55b
mm9_v1_chr7_-_4990023_4990047	0.122127	AGUGCAA	BC147237|Zfp784|654801|zinc finger protein 784	BC147238|Zfp784|654801|zinc finger protein 784	AK050452|Zfp784|654801|zinc finger protein 784	AK161791|Zfp784|654801|zinc finger protein 784	NM_001039532|Zfp784|654801|zinc finger protein 784
mm9_v1_chr15_-_102347434_102347445	0.121342	AGUGCAA	NM_001163643|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12	NM_009582|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12
mm9_v1_chr5_-_100407805_100407989	0.116744	AGUGCAA	U11273|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK135733|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	AK077409|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	BC049098|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077265|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077266|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_001077267|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D	NM_007516|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr13_-_58009653_58009693	0.114654	AGUGCAA	AK049019|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK039058|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	X92864|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK036189|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166463|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166464|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166465|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166466|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_009262|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr19_+_38911056_38911166	0.111169	AGUGCAA	AK172979|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	NM_145952|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138056|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138057|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC145129|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12
mm9_v1_chr10_+_23869117_23869197	0.110137	AGUGCAA	AK158923|Stx7|53331|syntaxin 7	NM_016797|Stx7|53331|syntaxin 7	AK169822|Stx7|53331|syntaxin 7	AB019212|Stx7|53331|syntaxin 7	AK002867|Stx7|53331|syntaxin 7	AK166822|Stx7|53331|syntaxin 7	AK013869|Stx7|53331|syntaxin 7	AK142742|Stx7|53331|syntaxin 7	AK082927|Stx7|53331|syntaxin 7	AK179229|Stx7|53331|syntaxin 7	AF056323|Stx7|53331|syntaxin 7
mm9_v1_chr16_-_16359122_16359124	0.107066	AGUGCAA	NM_001025947|Dnm1l|74006|dynamin 1-like	NM_152816|Dnm1l|74006|dynamin 1-like
mm9_v1_chr8_+_71612616_71612811	0.106088	AGUGCAA	AK151200|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	NM_007509|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK170110|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169155|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169270|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151322|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152718|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152766|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159133|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159153|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159701|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160080|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159986|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169420|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160854|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK146499|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK153341|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK168852|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC046302|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC012497|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	Y12634|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC085300|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK166669|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK182828|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205457|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK206476|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209216|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209288|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209472|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209631|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK212223|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK213950|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215019|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215298|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK216725|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK217254|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK220015|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK214894|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK185732|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK191995|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chrX_+_65931715_65931923	0.10488	AGUGCAA	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr7_-_112900699_112900744	0.102263	AGUGCAA	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr6_-_29162226_29162288	0.101979	AGUGCAA	BC053416|Impdh1|23917|inosine 5'-phosphate dehydrogenase 1	NM_011829|Impdh1|23917|inosine 5'-phosphate dehydrogenase 1
mm9_v1_chr10_-_13194201_13194201	0.100843	AGUGCAA	BC012871|Phactr2|215789|phosphatase and actin regulator 2	NM_001195065|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr2_+_22923653_22923769	0.0953516	AGUGCAA	NM_001102436|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	NM_028793|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	AK050450|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC090641|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr11_-_86570918_86571097	0.0947225	AGUGCAA	AK158438|Cltc|67300|clathrin, heavy polypeptide (Hc)	BC079897|Cltc|67300|clathrin, heavy polypeptide (Hc)	NM_001003908|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK171732|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK156869|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr11_-_115465172_115465241	0.0918305	AGUGCAA	BC056424|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC110676|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK082327|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK147882|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK132183|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK031086|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK122212|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC085617|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	NM_173048|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm9_v1_chr12_+_71926429_71926675	0.0910079	AGUGCAA	BC053929|Frmd6|319710|FERM domain containing 6	NM_028127|Frmd6|319710|FERM domain containing 6	AK054457|Frmd6|319710|FERM domain containing 6
mm9_v1_chr19_+_60887452_60887529	0.0898693	AGUGCAA	NM_001167829|Fam45a|67894|family with sequence similarity 45, member A	NM_026437|Fam45a|67894|family with sequence similarity 45, member A	AK004643|Fam45a|67894|family with sequence similarity 45, member A	AK168474|Fam45a|67894|family with sequence similarity 45, member A	AK171767|Fam45a|67894|family with sequence similarity 45, member A	AK145769|Fam45a|67894|family with sequence similarity 45, member A	AK007867|Fam45a|67894|family with sequence similarity 45, member A	BC013514|Fam45a|67894|family with sequence similarity 45, member A	AK202624|Fam45a|67894|family with sequence similarity 45, member A
mm9_v1_chr4_-_151235861_151235879	0.08946	AGUGCAA	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr2_+_118727248_118727453	0.0874822	AGUGCAA	NM_001045523|Bahd1|228536|bromo adjacent homology domain containing 1	AK152597|Bahd1|228536|bromo adjacent homology domain containing 1
mm9_v1_chrX_+_63902456_63902492	0.0870191	AGUGCAA	NM_001161431|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr11_+_105451296_105451348	0.0862254	AGUGCAA	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr4_-_144836658_144836801	0.0858709	AGUGCAA	X76401|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK170464|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	M60469|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	M59378|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	BC141405|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK155385|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK004752|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK004844|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK085490|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK140332|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK153301|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	NM_011610|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK156996|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b
mm9_v1_chr9_+_57437238_57437346	0.0846641	AGUGCAA	NM_027895|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	BC037093|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	AK004783|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	BC151153|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	AK154642|Ulk3|71742|unc-51-like kinase 3 (C. elegans)
mm9_v1_chr13_-_104710374_104710739	0.0834273	AGUGCAA	BC141178|Erbb2ip|59079|Erbb2 interacting protein	BC141188|Erbb2ip|59079|Erbb2 interacting protein	BC145498|Erbb2ip|59079|Erbb2 interacting protein	BC145509|Erbb2ip|59079|Erbb2 interacting protein	AK169529|Erbb2ip|59079|Erbb2 interacting protein	NM_001005868|Erbb2ip|59079|Erbb2 interacting protein	NM_021563|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr2_-_23427476_23427627	0.0820281	AGUGCAA	AK162056|Spopl|76857|speckle-type POZ protein-like	BC111867|Spopl|76857|speckle-type POZ protein-like	AK157283|Spopl|76857|speckle-type POZ protein-like	NM_001165997|Spopl|76857|speckle-type POZ protein-like	NM_001165998|Spopl|76857|speckle-type POZ protein-like	NM_029773|Spopl|76857|speckle-type POZ protein-like
mm9_v1_chr11_-_77421308_77421363	0.080272	AGUGCAA	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr2_-_11475555_11475702	0.0787497	AGUGCAA	NM_001177758|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK138807|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr19_-_34601874_34601967	0.0778312	AGUGCAA	AK154804|Lipa|16889|lysosomal acid lipase A	BC058564|Lipa|16889|lysosomal acid lipase A	AK088659|Lipa|16889|lysosomal acid lipase A	AK149791|Lipa|16889|lysosomal acid lipase A	AK169567|Lipa|16889|lysosomal acid lipase A	AK153624|Lipa|16889|lysosomal acid lipase A	AK083099|Lipa|16889|lysosomal acid lipase A	AK164007|Lipa|16889|lysosomal acid lipase A	NM_001111100|Lipa|16889|lysosomal acid lipase A	NM_021460|Lipa|16889|lysosomal acid lipase A
mm9_v1_chr6_+_70794501_70794578	0.0714241	AGUGCAA	BC054809|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	NM_010121|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AF076681|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK010397|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK046355|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3
mm9_v1_chr10_+_127529818_127529845	0.0704044	AGUGCAA	AK133149|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC048415|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	NM_054078|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr2_+_156022382_156022502	0.0669768	AGUGCAA	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr2_-_119303348_119303443	0.0628983	AGUGCAA	BC061495|Ino80|68142|INO80 homolog (S. cerevisiae)	AK040612|Ino80|68142|INO80 homolog (S. cerevisiae)	NM_026574|Ino80|68142|INO80 homolog (S. cerevisiae)
mm9_v1_chr1_+_166237784_166237874	0.0614861	AGUGCAA	AK144915|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	NM_138314|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	NM_178071|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	AK043515|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	AK085222|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	AK164652|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	AK044962|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	BC038021|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)	BC049225|Nme7|171567|non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr1_+_39957733_39957796	0.0611581	AGUGCAA	NM_008696|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr2_+_76244578_76244594	0.061036	AGUGCAA	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr10_+_3366075_3366075	0.0594631	AGUGCAA	AK157384|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170800|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170801|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170802|Ipcef1|320495|interaction protein for cytohesin exchange factors 1
mm9_v1_chr1_+_134195202_134195202	0.0572178	AGUGCAA	AK080356|Klhdc8a|213417|kelch domain containing 8A	NM_144810|Klhdc8a|213417|kelch domain containing 8A
mm9_v1_chr5_-_38952777_38952930	0.0563664	AGUGCAA	BC119358|Wdr1|22388|WD repeat domain 1	BC125295|Wdr1|22388|WD repeat domain 1	AK165225|Wdr1|22388|WD repeat domain 1	AK165323|Wdr1|22388|WD repeat domain 1	AK167813|Wdr1|22388|WD repeat domain 1	AK151146|Wdr1|22388|WD repeat domain 1	AF020055|Wdr1|22388|WD repeat domain 1	NM_011715|Wdr1|22388|WD repeat domain 1	AK153338|Wdr1|22388|WD repeat domain 1	AK170379|Wdr1|22388|WD repeat domain 1	AK167241|Wdr1|22388|WD repeat domain 1	AK169893|Wdr1|22388|WD repeat domain 1	AK156300|Wdr1|22388|WD repeat domain 1	AK167275|Wdr1|22388|WD repeat domain 1	AK004858|Wdr1|22388|WD repeat domain 1	AK169835|Wdr1|22388|WD repeat domain 1	BC049117|Wdr1|22388|WD repeat domain 1
mm9_v1_chr4_+_86520317_86520392	0.0543729	AGUGCAA	BC059819|Acer2|230379|alkaline ceramidase 2	NM_139306|Acer2|230379|alkaline ceramidase 2	AK085306|Acer2|230379|alkaline ceramidase 2	AF282864|Acer2|230379|alkaline ceramidase 2	AY312515|Acer2|230379|alkaline ceramidase 2
mm9_v1_chr12_-_3309887_3309978	0.0531873	AGUGCAA	AK134988|Rab10|19325|RAB10, member RAS oncogene family	AK150791|Rab10|19325|RAB10, member RAS oncogene family	AK153325|Rab10|19325|RAB10, member RAS oncogene family	BC052735|Rab10|19325|RAB10, member RAS oncogene family	BC056374|Rab10|19325|RAB10, member RAS oncogene family	AK160960|Rab10|19325|RAB10, member RAS oncogene family	AK150319|Rab10|19325|RAB10, member RAS oncogene family	AK153315|Rab10|19325|RAB10, member RAS oncogene family	AK159988|Rab10|19325|RAB10, member RAS oncogene family	AK168320|Rab10|19325|RAB10, member RAS oncogene family	AK087964|Rab10|19325|RAB10, member RAS oncogene family	AK159383|Rab10|19325|RAB10, member RAS oncogene family	AK159845|Rab10|19325|RAB10, member RAS oncogene family	AK028320|Rab10|19325|RAB10, member RAS oncogene family	AK166010|Rab10|19325|RAB10, member RAS oncogene family	AK045299|Rab10|19325|RAB10, member RAS oncogene family	AK008725|Rab10|19325|RAB10, member RAS oncogene family	AK146357|Rab10|19325|RAB10, member RAS oncogene family	NM_016676|Rab10|19325|RAB10, member RAS oncogene family
mm9_v1_chrX_-_159081510_159081550	0.0477212	AGUGCAA	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr6_-_66987377_66987402	0.0465848	AGUGCAA	BC011141|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	AK144900|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	L28177|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	NM_007836|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha
mm9_v1_chr3_-_141645214_141645214	0.0456696	AGUGCAA	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr18_+_69505374_69505487	0.0455092	AGUGCAA	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr4_+_115747945_115748197	0.0452357	AGUGCAA	AK154613|Lrrc41|230654|leucine rich repeat containing 41	AK170641|Lrrc41|230654|leucine rich repeat containing 41	AK085717|Lrrc41|230654|leucine rich repeat containing 41	AK163171|Lrrc41|230654|leucine rich repeat containing 41	BC022976|Lrrc41|230654|leucine rich repeat containing 41	NM_153521|Lrrc41|230654|leucine rich repeat containing 41	BC024940|Lrrc41|230654|leucine rich repeat containing 41	AK052762|Lrrc41|230654|leucine rich repeat containing 41
mm9_v1_chr17_+_87506971_87507037	0.043952	AGUGCAA	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr1_-_52784161_52784228	0.0427157	AGUGCAA	AK035995|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_133829|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_178081|Mfsd6|98682|major facilitator superfamily domain containing 6	AK171946|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr2_+_17976897_17976897	0.0424475	AGUGCAA	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr14_+_69647294_69647485	0.0396947	AGUGCAA	AF099098|Stc1|20855|stanniocalcin 1	BC021425|Stc1|20855|stanniocalcin 1	AK134260|Stc1|20855|stanniocalcin 1	NM_009285|Stc1|20855|stanniocalcin 1	AK142220|Stc1|20855|stanniocalcin 1	AK149293|Stc1|20855|stanniocalcin 1	AK149351|Stc1|20855|stanniocalcin 1	AK161960|Stc1|20855|stanniocalcin 1
mm9_v1_chr2_-_180869796_180869941	0.037444	AGUGCAA	AF490773|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000494|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000495|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000496|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000497|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000498|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000499|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000500|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000501|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000502|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000503|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000504|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	BC145453|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001003824|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001003825|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006668|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006669|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006674|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006675|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006676|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006677|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006678|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006679|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006680|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_010611|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2
mm9_v1_chr18_+_53335981_53336033	0.0367803	AGUGCAA	AK005470|Snx2|67804|sorting nexin 2	AK002692|Snx2|67804|sorting nexin 2	BC006960|Snx2|67804|sorting nexin 2	NM_026386|Snx2|67804|sorting nexin 2	AK010572|Snx2|67804|sorting nexin 2	AK075929|Snx2|67804|sorting nexin 2	AK153525|Snx2|67804|sorting nexin 2	CT010229|Snx2|67804|sorting nexin 2
mm9_v1_chr2_-_151458256_151458277	0.0329778	AGUGCAA	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr2_-_101637773_101637865	0.0326084	AGUGCAA	BC048394|Prr5l|72446|proline rich 5 like	AK030499|Prr5l|72446|proline rich 5 like	NM_001083810|Prr5l|72446|proline rich 5 like	NM_175181|Prr5l|72446|proline rich 5 like	AK145981|Prr5l|72446|proline rich 5 like
mm9_v1_chr16_+_33684551_33684609	0.0324329	AGUGCAA	AK028518|Heg1|77446|HEG homolog 1 (zebrafish)	AK163128|Heg1|77446|HEG homolog 1 (zebrafish)	NM_175256|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr5_+_54389740_54389855	0.0309448	AGUGCAA	AK173183|Stim2|116873|stromal interaction molecule 2	NM_001081103|Stim2|116873|stromal interaction molecule 2	AK080310|Stim2|116873|stromal interaction molecule 2	BC137881|Stim2|116873|stromal interaction molecule 2	BC145001|Stim2|116873|stromal interaction molecule 2
mm9_v1_chr16_+_52031661_52031695	0.0284734	AGUGCAA	NM_001033238|Cblb|208650|Casitas B-lineage lymphoma b	AK147367|Cblb|208650|Casitas B-lineage lymphoma b
mm9_v1_chr8_+_128822478_128822500	0.0284656	AGUGCAA	NM_175434|Slc35f3|210027|solute carrier family 35, member F3	AK046359|Slc35f3|210027|solute carrier family 35, member F3
mm9_v1_chr11_-_60166405_60166439	0.0276122	AGUGCAA	AK166040|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039092|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039093|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_153080|Tom1l2|216810|target of myb1-like 2 (chicken)
mm9_v1_chr5_+_115018259_115018259	0.0256306	AGUGCAA	BC057022|BC057022|433940|cDNA sequence BC057022	NM_001004180|BC057022|433940|cDNA sequence BC057022
mm9_v1_chr10_+_52137324_52137453	0.0247947	AGUGCAA	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr12_+_82960953_82961016	0.0231145	AGUGCAA	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chrX_-_48559008_48559019	0.0205078	AGUGCAA	AK040522|Mbnl3|171170|muscleblind-like 3 (Drosophila)	NM_134163|Mbnl3|171170|muscleblind-like 3 (Drosophila)	AK088971|Mbnl3|171170|muscleblind-like 3 (Drosophila)
mm9_v1_chr10_-_8605668_8605870	0.0189995	AGUGCAA	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr18_-_6516073_6516084	0.017813	AGUGCAA	AK148194|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AF079765|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	NM_007935|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr15_-_79664645_79664773	0.016954	AGUGCAA	BC011199|Cbx6|494448|chromobox homolog 6	BC048240|Cbx6|494448|chromobox homolog 6	AK004679|Cbx6|494448|chromobox homolog 6	AK090253|Cbx6|494448|chromobox homolog 6	AK146048|Cbx6|494448|chromobox homolog 6	AK146103|Cbx6|494448|chromobox homolog 6	AY394488|Npcd|504193|neuronal pentraxin chromo domain	AY394489|Npcd|504193|neuronal pentraxin chromo domain	AY395907|Npcd|504193|neuronal pentraxin chromo domain	AK035250|Cbx6|494448|chromobox homolog 6	NM_001013360|Npcd|504193|neuronal pentraxin chromo domain	NM_001013362|Npcd|504193|neuronal pentraxin chromo domain	NM_028763|Cbx6|494448|chromobox homolog 6
mm9_v1_chr4_+_101092307_101092393	0.0150292	AGUGCAA	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr13_-_94269616_94269653	0.0149664	AGUGCAA	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr10_-_67375332_67375448	0.0145728	AGUGCAA	BC080272|Zfp365|216049|zinc finger protein 365	AK122387|Zfp365|216049|zinc finger protein 365	NM_178679|Zfp365|216049|zinc finger protein 365
mm9_v1_chr4_+_116393559_116393581	0.0108775	AGUGCAA	AK047755|Tesk2|230661|testis-specific kinase 2	NM_146151|Tesk2|230661|testis-specific kinase 2	AK031814|Tesk2|230661|testis-specific kinase 2	AK053368|Tesk2|230661|testis-specific kinase 2	BC029766|Tesk2|230661|testis-specific kinase 2
mm9_v1_chr12_-_52930506_52930535	0.00950217	AGUGCAA	AK172326|Hectd1|207304|HECT domain containing 1	NM_144788|Hectd1|207304|HECT domain containing 1
mm9_v1_chr9_-_101101334_101101402	0.00571344	AGUGCAA	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr2_-_35056582_35056639	0.00514918	AGUGCAA	AK160859|Rab14|68365|RAB14, member RAS oncogene family	NM_026697|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr17_+_53618542_53618596	0.000671772	AGUGCAA	AK081999|Rab5a|271457|RAB5A, member RAS oncogene family	NM_025887|Rab5a|271457|RAB5A, member RAS oncogene family	AK076093|Rab5a|271457|RAB5A, member RAS oncogene family	BC096481|Rab5a|271457|RAB5A, member RAS oncogene family
