mm9_v1_chr1_-_42749940_42749978	15.9485	AIRE.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chrX_+_108009728_108009803	8.23865	AIRE.p2	BC138657|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC145919|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC052012|Pou3f4|18994|POU domain, class 3, transcription factor 4	X66603|Pou3f4|18994|POU domain, class 3, transcription factor 4	AK158302|Pou3f4|18994|POU domain, class 3, transcription factor 4	BC086670|Pou3f4|18994|POU domain, class 3, transcription factor 4	NM_008901|Pou3f4|18994|POU domain, class 3, transcription factor 4
mm9_v1_chr2_-_91771882_91771894	7.96444	AIRE.p2	M34327|Mdk|17242|midkine	M35833|Mdk|17242|midkine
mm9_v1_chr19_-_36994088_36994132	6.61955	AIRE.p2	BC055778|Fgfbp3|72514|fibroblast growth factor binding protein 3	NM_028263|Fgfbp3|72514|fibroblast growth factor binding protein 3	AK167949|Fgfbp3|72514|fibroblast growth factor binding protein 3
mm9_v1_chr3_+_5218545_5218658	5.63632	AIRE.p2	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr5_-_5265981_5266073	5.2518	AIRE.p2	AK083269|Cdk14|18647|cyclin-dependent kinase 14	AK139386|Cdk14|18647|cyclin-dependent kinase 14	BC068134|Cdk14|18647|cyclin-dependent kinase 14	AK138437|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr9_+_96159123_96159160	5.05338	AIRE.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chrX_+_104115963_104116162	5.02848	AIRE.p2	NM_175271|Lpar4|78134|lysophosphatidic acid receptor 4	BC052178|Lpar4|78134|lysophosphatidic acid receptor 4	AK051709|Lpar4|78134|lysophosphatidic acid receptor 4	AK019967|Lpar4|78134|lysophosphatidic acid receptor 4	AK045289|Lpar4|78134|lysophosphatidic acid receptor 4	BC069178|Lpar4|78134|lysophosphatidic acid receptor 4	BC138893|Lpar4|78134|lysophosphatidic acid receptor 4	BC138894|Lpar4|78134|lysophosphatidic acid receptor 4
mm9_v1_chr1_-_128634766_128634787	4.95116	AIRE.p2	AK083792|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr9_+_85739048_85739158	4.69592	AIRE.p2	AK050794|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr6_-_12699189_12699252	4.63624	AIRE.p2	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr6_-_49214015_49214054	4.50072	AIRE.p2	AK170599|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK076230|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK089980|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK171708|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK005187|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	NM_198102|Tra2a|101214|transformer 2 alpha homolog (Drosophila)	AK148552|Tra2a|101214|transformer 2 alpha homolog (Drosophila)
mm9_v1_chr11_-_54601133_54601161	4.28706	AIRE.p2	BC034079|Cdc42se2|72729|CDC42 small effector 2	AK088090|Cdc42se2|72729|CDC42 small effector 2	AK090381|Cdc42se2|72729|CDC42 small effector 2	AK012983|Cdc42se2|72729|CDC42 small effector 2	AK039301|Cdc42se2|72729|CDC42 small effector 2	AK135775|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr9_+_96159666_96159703	4.27647	AIRE.p2	NM_001184710|Tfdp2|211586|transcription factor Dp 2	NM_001184711|Tfdp2|211586|transcription factor Dp 2	AK158829|Tfdp2|211586|transcription factor Dp 2	BC092230|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr14_+_67254087_67254180	4.04605	AIRE.p2	AK085653|Adra1a|11549|adrenergic receptor, alpha 1a	AK079597|Adra1a|11549|adrenergic receptor, alpha 1a	NM_013461|Adra1a|11549|adrenergic receptor, alpha 1a	AK050183|Adra1a|11549|adrenergic receptor, alpha 1a	AK042759|Adra1a|11549|adrenergic receptor, alpha 1a	AK138919|Adra1a|11549|adrenergic receptor, alpha 1a
mm9_v1_chrX_+_166317553_166317595	3.86453	AIRE.p2	AK135734|Mid1|17318|midline 1	AY112904|Mid1|17318|midline 1	NM_183151|Mid1|17318|midline 1	BC053704|Mid1|17318|midline 1
mm9_v1_chr13_-_4608352_4608430	3.73528	AIRE.p2	U68535|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK002507|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK007924|Akr1e1|56043|aldo-keto reductase family 1, member E1	AK028605|Akr1e1|56043|aldo-keto reductase family 1, member E1	BC012692|Akr1e1|56043|aldo-keto reductase family 1, member E1	NM_018859|Akr1e1|56043|aldo-keto reductase family 1, member E1
mm9_v1_chr11_-_54601093_54601128	3.69644	AIRE.p2	BC048935|Cdc42se2|72729|CDC42 small effector 2	AK080473|Cdc42se2|72729|CDC42 small effector 2	AK146313|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr12_+_16817772_16817797	3.63995	AIRE.p2	AK035116|E2f6|50496|E2F transcription factor 6	AK146792|E2f6|50496|E2F transcription factor 6	BC057929|E2f6|50496|E2F transcription factor 6	BC019166|E2f6|50496|E2F transcription factor 6
mm9_v1_chr8_+_86239131_86239208	3.46737	AIRE.p2	AK146294|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK145927|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK150997|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK172448|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK012002|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK016960|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK149475|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK151395|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK152394|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK137114|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	BC020134|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK164289|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK168079|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	AK167890|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr2_-_91771919_91771949	3.24607	AIRE.p2	AK032742|Mdk|17242|midkine	AK084457|Mdk|17242|midkine	NM_001012336|Mdk|17242|midkine
mm9_v1_chr17_+_17539908_17539941	3.20095	AIRE.p2	AF351204|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr3_+_63780058_63780135	3.19996	AIRE.p2	AK143197|Gmps|229363|guanine monophosphate synthetase	NM_001033300|Gmps|229363|guanine monophosphate synthetase	AK169701|Gmps|229363|guanine monophosphate synthetase	AK169043|Gmps|229363|guanine monophosphate synthetase	AK167857|Gmps|229363|guanine monophosphate synthetase	AK049755|Gmps|229363|guanine monophosphate synthetase	BC138411|Gmps|229363|guanine monophosphate synthetase	BC138412|Gmps|229363|guanine monophosphate synthetase	AK168239|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr11_-_107050573_107050694	2.94224	AIRE.p2	BC024874|Nol11|68979|nucleolar protein 11	AK005123|Nol11|68979|nucleolar protein 11	AK038696|Nol11|68979|nucleolar protein 11	AK078524|Nol11|68979|nucleolar protein 11	AK157743|Nol11|68979|nucleolar protein 11	AK076704|Nol11|68979|nucleolar protein 11	NM_001161329|Nol11|68979|nucleolar protein 11	NM_133702|Nol11|68979|nucleolar protein 11
mm9_v1_chr6_-_49164469_49164732	2.91778	AIRE.p2	AB046173|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	BC045138|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	BC049082|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK011797|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK088465|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3	AK011689|Igf2bp3|140488|insulin-like growth factor 2 mRNA binding protein 3
mm9_v1_chr3_+_66023884_66023904	2.90505	AIRE.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr18_-_46372017_46372260	2.88869	AIRE.p2	AY251389|Trim36|28105|tripartite motif-containing 36	AB103063|Trim36|28105|tripartite motif-containing 36	BC058106|Trim36|28105|tripartite motif-containing 36	NM_178872|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr4_+_134420419_134420535	2.76644	AIRE.p2	BC145805|Rhd|19746|Rh blood group, D antigen	NM_011270|Rhd|19746|Rh blood group, D antigen	AF057524|Rhd|19746|Rh blood group, D antigen	AK089642|Rhd|19746|Rh blood group, D antigen	AF069311|Rhd|19746|Rh blood group, D antigen	AK079335|Rhd|19746|Rh blood group, D antigen	AK171641|Rhd|19746|Rh blood group, D antigen	AB015189|Rhd|19746|Rh blood group, D antigen	AB015190|Rhd|19746|Rh blood group, D antigen	AF047827|Rhd|19746|Rh blood group, D antigen	AK157850|Rhd|19746|Rh blood group, D antigen	AF012430|Rhd|19746|Rh blood group, D antigen
mm9_v1_chr6_-_127075853_127076093	2.76567	AIRE.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr1_-_180267913_180267920	2.66057	AIRE.p2	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr5_-_21290971_21291070	2.52131	AIRE.p2	AK013295|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	D63784|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	NM_009584|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC021755|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK167991|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK131964|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161376|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK162409|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK136951|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC052027|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK169850|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr1_+_19202046_19202134	2.36827	AIRE.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr17_-_15963372_15963555	2.36233	AIRE.p2	BC138890|Rgmb|68799|RGM domain family, member B	AK035713|Rgmb|68799|RGM domain family, member B	AK046637|Rgmb|68799|RGM domain family, member B	AK080819|Rgmb|68799|RGM domain family, member B	BC096024|Rgmb|68799|RGM domain family, member B	AK030386|Rgmb|68799|RGM domain family, member B	AK047390|Rgmb|68799|RGM domain family, member B	BC030405|Rgmb|68799|RGM domain family, member B	AJ557514|Rgmb|68799|RGM domain family, member B	NM_178615|Rgmb|68799|RGM domain family, member B
mm9_v1_chr5_+_147656646_147656733	2.25001	AIRE.p2	NM_026864|Rasl11a|68895|RAS-like, family 11, member A	AK004371|Rasl11a|68895|RAS-like, family 11, member A
mm9_v1_chr13_+_14705508_14705551	2.24435	AIRE.p2	AK136115|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	NM_008944|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK151883|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK152862|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK167752|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK012990|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK035578|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK154011|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK012119|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	BC026768|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AF099733|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2
mm9_v1_chr18_-_16966954_16967033	2.21385	AIRE.p2	AK087418|Cdh2|12558|cadherin 2	BC022107|Cdh2|12558|cadherin 2	AK032826|Cdh2|12558|cadherin 2
mm9_v1_chr5_-_138596915_138596971	2.21177	AIRE.p2	BC052453|Zfp113|56314|zinc finger protein 113	BC054525|Zfp113|56314|zinc finger protein 113	BC056991|Zfp113|56314|zinc finger protein 113	AF167320|Zfp113|56314|zinc finger protein 113	AK076349|Zfp113|56314|zinc finger protein 113	AK220556|Zfp113|56314|zinc finger protein 113	NM_019747|Zfp113|56314|zinc finger protein 113
mm9_v1_chr5_+_130505154_130505232	2.15463	AIRE.p2	AF118271|Crcp|12909|calcitonin gene-related peptide-receptor component protein	NM_007761|Crcp|12909|calcitonin gene-related peptide-receptor component protein	AK075587|Crcp|12909|calcitonin gene-related peptide-receptor component protein	AF028242|Crcp|12909|calcitonin gene-related peptide-receptor component protein
mm9_v1_chr8_-_26707934_26708016	2.1166	AIRE.p2	AK076546|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	BC055685|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	NM_173012|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK041725|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK031563|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK034050|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK050943|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2	AK163507|Letm2|270035|leucine zipper-EF-hand containing transmembrane protein 2
mm9_v1_chr11_+_3863948_3864033	2.08537	AIRE.p2	AK029075|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	NM_022889|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC004844|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC011142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK088831|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AF289539|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK220142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm9_v1_chr3_+_133899454_133899460	2.069	AIRE.p2	BC065149|Cxxc4|319478|CXXC finger 4
mm9_v1_chr1_+_168184269_168184413	2.06079	AIRE.p2	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr5_+_89012547_89012592	2.03494	AIRE.p2	AK018184|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr7_+_130267661_130267769	2.01944	AIRE.p2	AK147327|Tnrc6a|233833|trinucleotide repeat containing 6a	AK008599|Tnrc6a|233833|trinucleotide repeat containing 6a	BC026849|Tnrc6a|233833|trinucleotide repeat containing 6a	AK083848|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr3_+_66023808_66023844	2.01883	AIRE.p2	NM_008987|Ptx3|19288|pentraxin related gene	BC022176|Ptx3|19288|pentraxin related gene
mm9_v1_chr17_+_17539832_17539856	1.98595	AIRE.p2	AK017685|Lix1|66643|limb expression 1 homolog (chicken)	AK012220|Lix1|66643|limb expression 1 homolog (chicken)	BC052700|Lix1|66643|limb expression 1 homolog (chicken)	BC063057|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr2_+_44966657_44966746	1.97427	AIRE.p2	BC031611|Gm13476|433424|predicted gene 13476	NM_001177394|Gm13476|433424|predicted gene 13476
mm9_v1_chr4_-_94223435_94223491	1.94629	AIRE.p2	AK046647|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK076487|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK013385|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK032696|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	BC020067|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK150311|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK140382|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK171141|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160297|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160572|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	NM_026368|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene
mm9_v1_chr5_-_135727086_135727099	1.93922	AIRE.p2	AK021164|Fzd9|14371|frizzled homolog 9 (Drosophila)
mm9_v1_chr5_-_67490295_67490393	1.93664	AIRE.p2	AK052579|Phox2b|18935|paired-like homeobox 2b	BC079610|Phox2b|18935|paired-like homeobox 2b	NM_008888|Phox2b|18935|paired-like homeobox 2b	Y14493|Phox2b|18935|paired-like homeobox 2b
mm9_v1_chr12_-_86113816_86113911	1.92178	AIRE.p2	AB021289|Npc2|67963|Niemann Pick type C2	AK149805|Npc2|67963|Niemann Pick type C2	AK151067|Npc2|67963|Niemann Pick type C2	AK154838|Npc2|67963|Niemann Pick type C2	AK008603|Npc2|67963|Niemann Pick type C2	AK151133|Npc2|67963|Niemann Pick type C2	AK152236|Npc2|67963|Niemann Pick type C2	AK153020|Npc2|67963|Niemann Pick type C2	AK153203|Npc2|67963|Niemann Pick type C2	AK167869|Npc2|67963|Niemann Pick type C2	AK170327|Npc2|67963|Niemann Pick type C2	BC003471|Npc2|67963|Niemann Pick type C2	AK165263|Npc2|67963|Niemann Pick type C2	AK009127|Npc2|67963|Niemann Pick type C2	AK159154|Npc2|67963|Niemann Pick type C2	BC007190|Npc2|67963|Niemann Pick type C2	AK012239|Npc2|67963|Niemann Pick type C2
mm9_v1_chr8_+_108583449_108583790	1.90947	AIRE.p2	NM_010901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK147708|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK155087|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK051602|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK134054|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK039929|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK220187|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120900|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	D85612|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887629|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887630|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887631|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
mm9_v1_chr14_-_52780511_52780625	1.85342	AIRE.p2	AK082901|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)
mm9_v1_chr17_-_37095372_37095414	1.85175	AIRE.p2	AK003714|Znrd1|66136|zinc ribbon domain containing, 1	NM_023162|Znrd1|66136|zinc ribbon domain containing, 1	BC043016|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chr10_-_126467848_126467902	1.84683	AIRE.p2	BC034286|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK020437|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK169164|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK018591|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK141183|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK012240|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK171656|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK172112|Tsfm|66399|Ts translation elongation factor, mitochondrial	BC057904|Tsfm|66399|Ts translation elongation factor, mitochondrial	NM_025537|Tsfm|66399|Ts translation elongation factor, mitochondrial
mm9_v1_chr3_-_157587998_157588029	1.8229	AIRE.p2	AK002480|Cth|107869|cystathionase (cystathionine gamma-lyase)	BC019483|Cth|107869|cystathionase (cystathionine gamma-lyase)	AY083352|Cth|107869|cystathionase (cystathionine gamma-lyase)	NM_145953|Cth|107869|cystathionase (cystathionine gamma-lyase)
mm9_v1_chr6_+_91828040_91828112	1.82235	AIRE.p2	NM_172730|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	BC051147|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK170727|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK156259|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK081505|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK039818|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK155581|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK170492|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	BC038871|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK051852|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene
mm9_v1_chr2_-_33323966_33324113	1.81972	AIRE.p2	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chrY_+_234230_234474	1.81074	AIRE.p2	AK047790|Kdm5d|20592|lysine (K)-specific demethylase 5D	NM_011419|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK141096|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK140971|Kdm5d|20592|lysine (K)-specific demethylase 5D	BC060077|Kdm5d|20592|lysine (K)-specific demethylase 5D	AF127244|Kdm5d|20592|lysine (K)-specific demethylase 5D	AB221607|Kdm5d|20592|lysine (K)-specific demethylase 5D	Z29652|Kdm5d|20592|lysine (K)-specific demethylase 5D
mm9_v1_chr7_+_118172447_118172534	1.79609	AIRE.p2	NM_009431|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK040331|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC024749|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK083921|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK045101|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK040205|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC080719|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC060091|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK148536|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC010344|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC053910|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	L49502|Ctr9|22083|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr5_+_89012537_89012542	1.7485	AIRE.p2	AK013185|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr14_-_48037815_48037862	1.73851	AIRE.p2	BC058087|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	BC027273|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK129032|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK147955|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK048470|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK085882|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5
mm9_v1_chr7_-_36103433_36103463	1.72768	AIRE.p2	BC100577|Gpatch1|67471|G patch domain containing 1	AK154571|Gpatch1|67471|G patch domain containing 1	AK014367|Gpatch1|67471|G patch domain containing 1	BC125584|Gpatch1|67471|G patch domain containing 1	BC132155|Gpatch1|67471|G patch domain containing 1	AK004868|Gpatch1|67471|G patch domain containing 1	NM_026181|Gpatch1|67471|G patch domain containing 1
mm9_v1_chr2_+_158450623_158450686	1.66071	AIRE.p2	AK046312|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK142980|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	NM_175419|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK046584|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC028806|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC052039|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC037522|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)
mm9_v1_chr3_+_142428186_142428231	1.63968	AIRE.p2	AK146223|Gtf2b|229906|general transcription factor IIB	AK131856|Gtf2b|229906|general transcription factor IIB	AK133097|Gtf2b|229906|general transcription factor IIB	AK133825|Gtf2b|229906|general transcription factor IIB	AK143935|Gtf2b|229906|general transcription factor IIB	AK145403|Gtf2b|229906|general transcription factor IIB	AK146666|Gtf2b|229906|general transcription factor IIB	AK146910|Gtf2b|229906|general transcription factor IIB	AK151577|Gtf2b|229906|general transcription factor IIB	BC016637|Gtf2b|229906|general transcription factor IIB	NM_145546|Gtf2b|229906|general transcription factor IIB
mm9_v1_chr2_+_172847371_172847458	1.60725	AIRE.p2	AK166609|Rbm38|56190|RNA binding motif protein 38	NM_019547|Rbm38|56190|RNA binding motif protein 38	BC006687|Rbm38|56190|RNA binding motif protein 38	AK162141|Rbm38|56190|RNA binding motif protein 38	AK146026|Rbm38|56190|RNA binding motif protein 38	AK172625|Rbm38|56190|RNA binding motif protein 38	BC085307|Rbm38|56190|RNA binding motif protein 38
mm9_v1_chr11_-_54601163_54601250	1.59301	AIRE.p2	AK145931|Cdc42se2|72729|CDC42 small effector 2	AK160934|Cdc42se2|72729|CDC42 small effector 2	NM_178626|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr12_-_82695944_82695966	1.5743	AIRE.p2	BC013096|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	NM_027213|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	AK171784|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)
mm9_v1_chr4_-_148511650_148511708	1.56669	AIRE.p2	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr15_+_76709688_76709760	1.56467	AIRE.p2	BC011501|Zfp7|223669|zinc finger protein 7	NM_145916|Zfp7|223669|zinc finger protein 7	AK144887|Zfp7|223669|zinc finger protein 7	AK038299|Zfp7|223669|zinc finger protein 7	AK143414|Zfp7|223669|zinc finger protein 7	AK168948|Zfp7|223669|zinc finger protein 7	BC062103|Zfp7|223669|zinc finger protein 7
mm9_v1_chr16_+_27388907_27389196	1.56326	AIRE.p2	BC144895|Ccdc50|67501|coiled-coil domain containing 50	BC144898|Ccdc50|67501|coiled-coil domain containing 50	BC145933|Ccdc50|67501|coiled-coil domain containing 50	BC145935|Ccdc50|67501|coiled-coil domain containing 50	NM_001025615|Ccdc50|67501|coiled-coil domain containing 50	NM_026202|Ccdc50|67501|coiled-coil domain containing 50	AK162434|Ccdc50|67501|coiled-coil domain containing 50	AK016827|Ccdc50|67501|coiled-coil domain containing 50	AK151672|Ccdc50|67501|coiled-coil domain containing 50	AK147820|Ccdc50|67501|coiled-coil domain containing 50	AK077557|Ccdc50|67501|coiled-coil domain containing 50	AK165214|Ccdc50|67501|coiled-coil domain containing 50	AK012190|Ccdc50|67501|coiled-coil domain containing 50	AJ534985|Ccdc50|67501|coiled-coil domain containing 50
mm9_v1_chr6_+_134961629_134961652	1.55619	AIRE.p2	NM_026360|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK010310|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132242|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132244|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK076982|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC060168|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC095944|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
mm9_v1_chr7_+_13063673_13063734	1.54021	AIRE.p2	AK044645|Zfp606|67370|zinc finger protein 606	AK143200|Zfp606|67370|zinc finger protein 606	AK021179|Zfp606|67370|zinc finger protein 606	AK039817|Zfp606|67370|zinc finger protein 606	AK173278|Zfp606|67370|zinc finger protein 606	AK165095|Zfp606|67370|zinc finger protein 606	BC052747|Zfp606|67370|zinc finger protein 606
mm9_v1_chr7_+_65913571_65913874	1.53207	AIRE.p2	NM_009728|Atp10a|11982|ATPase, class V, type 10A	AK132174|Atp10a|11982|ATPase, class V, type 10A	AK172149|Atp10a|11982|ATPase, class V, type 10A	AF156549|Atp10a|11982|ATPase, class V, type 10A	BC138356|Atp10a|11982|ATPase, class V, type 10A	BC138357|Atp10a|11982|ATPase, class V, type 10A	AK172972|Atp10a|11982|ATPase, class V, type 10A	AF011337|Atp10a|11982|ATPase, class V, type 10A
mm9_v1_chr10_-_12912880_12912990	1.532	AIRE.p2	AK011491|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC069962|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC067062|Ltv1|353258|LTV1 homolog (S. cerevisiae)	NM_181470|Ltv1|353258|LTV1 homolog (S. cerevisiae)
mm9_v1_chr11_+_98667577_98667599	1.53131	AIRE.p2	AK031902|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr4_-_124370770_124370859	1.53015	AIRE.p2	BC043139|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	AK012550|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	NM_026031|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	AK147113|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	BC061074|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	AK145266|Utp11l|67205|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)
mm9_v1_chr11_-_120459646_120459770	1.51967	AIRE.p2	AJ252140|Thoc4|21681|THO complex 4	NM_011568|Thoc4|21681|THO complex 4	U89876|Thoc4|21681|THO complex 4	BC120588|Thoc4|21681|THO complex 4	BC137658|Thoc4|21681|THO complex 4
mm9_v1_chr9_-_107673268_107673286	1.51073	AIRE.p2	BC043058|Rbm5|83486|RNA binding motif protein 5	BC019766|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr3_-_115832327_115832378	1.50348	AIRE.p2	U12884|Vcam1|22329|vascular cell adhesion molecule 1	M84487|Vcam1|22329|vascular cell adhesion molecule 1	L08431|Vcam1|22329|vascular cell adhesion molecule 1	BC011159|Vcam1|22329|vascular cell adhesion molecule 1	AK016465|Vcam1|22329|vascular cell adhesion molecule 1	AK030195|Vcam1|22329|vascular cell adhesion molecule 1	AK143401|Vcam1|22329|vascular cell adhesion molecule 1	AK162954|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr6_-_88848650_88848773	1.50333	AIRE.p2	AF004105|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK129039|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK077801|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088378|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	BC055318|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK145176|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK088156|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146187|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	D86725|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK146375|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	AK037751|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)	NM_008564|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)
mm9_v1_chr6_-_134847832_134848056	1.50236	AIRE.p2	NM_001167695|Gpr19|14760|G protein-coupled receptor 19	NM_001167696|Gpr19|14760|G protein-coupled receptor 19	BC021648|Gpr19|14760|G protein-coupled receptor 19	AK132917|Gpr19|14760|G protein-coupled receptor 19	AK140770|Gpr19|14760|G protein-coupled receptor 19	AK160688|Gpr19|14760|G protein-coupled receptor 19	NM_001167693|Gpr19|14760|G protein-coupled receptor 19	NM_001167694|Gpr19|14760|G protein-coupled receptor 19	NM_001167700|Gpr19|14760|G protein-coupled receptor 19
mm9_v1_chr9_+_15110657_15110715	1.49837	AIRE.p2	NM_027261|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	NM_029248|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK016109|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK050165|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK158208|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK161656|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK166329|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK166633|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK012662|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	AK014920|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D	BC110660|Taf1d|75316|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D
mm9_v1_chr9_-_10904725_10904816	1.49239	AIRE.p2	AK138164|Cntn5|244682|contactin 5	AK162856|Cntn5|244682|contactin 5	NM_001033359|Cntn5|244682|contactin 5	NM_001170787|Cntn5|244682|contactin 5
mm9_v1_chr14_-_25306175_25306259	1.49023	AIRE.p2	BC151168|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151002|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151169|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK143315|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC053071|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr14_-_20796411_20796481	1.48873	AIRE.p2	AK158697|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_001038637|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	NM_010315|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr11_+_80196766_80196898	1.48834	AIRE.p2	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr17_-_71202829_71202871	1.48739	AIRE.p2	AK160193|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164074|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chrX_+_162608411_162608448	1.47805	AIRE.p2	AK045118|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK160583|Gemin8|237221|gem (nuclear organelle) associated protein 8	NM_146238|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK085045|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK037580|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK047511|Gemin8|237221|gem (nuclear organelle) associated protein 8	AK053774|Gemin8|237221|gem (nuclear organelle) associated protein 8
mm9_v1_chr11_-_43239663_43239784	1.4702	AIRE.p2	NM_001131054|Pttg1|30939|pituitary tumor-transforming gene 1	BC023324|Pttg1|30939|pituitary tumor-transforming gene 1
mm9_v1_chr9_-_114690887_114691007	1.45945	AIRE.p2	AK151785|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AF188504|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168280|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	NM_133978|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC038633|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK167886|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC026773|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168024|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AY241869|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK040123|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7
mm9_v1_chr2_-_60719361_60719568	1.44632	AIRE.p2	AK161102|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	AK164307|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	AK145897|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	NM_001141931|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	NM_001141932|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	BC057866|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr6_-_97010364_97010406	1.44512	AIRE.p2	BC089490|Fam19a4|320701|family with sequence similarity 19, member A4	AK081531|Fam19a4|320701|family with sequence similarity 19, member A4	AK084114|Fam19a4|320701|family with sequence similarity 19, member A4	NM_177233|Fam19a4|320701|family with sequence similarity 19, member A4	AK149355|Fam19a4|320701|family with sequence similarity 19, member A4
mm9_v1_chr13_+_120251565_120251614	1.44051	AIRE.p2	AK008565|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	NM_001113550|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	NM_026127|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK008588|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK149119|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK020163|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK146515|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK014735|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	BC021327|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK017802|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK160863|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK008746|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	BC028328|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene	AK215837|4833420G17Rik|67392|RIKEN cDNA 4833420G17 gene
mm9_v1_chr7_+_86040793_86040943	1.41635	AIRE.p2	AK031972|Aen|68048|apoptosis enhancing nuclease	NM_001162939|Aen|68048|apoptosis enhancing nuclease	NM_026531|Aen|68048|apoptosis enhancing nuclease	AK165708|Aen|68048|apoptosis enhancing nuclease	AK012555|Aen|68048|apoptosis enhancing nuclease	AK090056|Aen|68048|apoptosis enhancing nuclease	AK166806|Aen|68048|apoptosis enhancing nuclease	AK167042|Aen|68048|apoptosis enhancing nuclease	AK076421|Aen|68048|apoptosis enhancing nuclease	AK167658|Aen|68048|apoptosis enhancing nuclease	AK017644|Aen|68048|apoptosis enhancing nuclease	AK089090|Aen|68048|apoptosis enhancing nuclease	BC022614|Aen|68048|apoptosis enhancing nuclease
mm9_v1_chr6_+_113102884_113103027	1.4147	AIRE.p2	AK088328|Setd5|72895|SET domain containing 5
mm9_v1_chr1_+_176102903_176103041	1.41419	AIRE.p2	NM_011465|Spna1|20739|spectrin alpha 1	AK142860|Spna1|20739|spectrin alpha 1	U87455|Spna1|20739|spectrin alpha 1	AF093576|Spna1|20739|spectrin alpha 1	BC150747|Spna1|20739|spectrin alpha 1
mm9_v1_chr2_+_119722957_119723040	1.41409	AIRE.p2	AK046252|Mga|29808|MAX gene associated	NM_001164274|Mga|29808|MAX gene associated	NM_013720|Mga|29808|MAX gene associated	AK162302|Mga|29808|MAX gene associated	AK032570|Mga|29808|MAX gene associated	AK012050|Mga|29808|MAX gene associated	AK139919|Mga|29808|MAX gene associated	AK172962|Mga|29808|MAX gene associated
mm9_v1_chr2_-_118375365_118375421	1.39967	AIRE.p2	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr5_+_31754808_31754902	1.39288	AIRE.p2	NM_172993|Zfp512|269639|zinc finger protein 512	AK173267|Zfp512|269639|zinc finger protein 512	AK146353|Zfp512|269639|zinc finger protein 512	AK084205|Zfp512|269639|zinc finger protein 512	AK149921|Zfp512|269639|zinc finger protein 512	AK154918|Zfp512|269639|zinc finger protein 512	BC089160|Zfp512|269639|zinc finger protein 512	BC066136|Zfp512|269639|zinc finger protein 512
mm9_v1_chr2_+_109120894_109121025	1.39142	AIRE.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr4_+_135728188_135728308	1.38132	AIRE.p2	AK087452|E2f2|242705|E2F transcription factor 2	NM_177733|E2f2|242705|E2F transcription factor 2
mm9_v1_chr6_+_114347929_114347929	1.38056	AIRE.p2	AK046607|Hrh1|15465|histamine receptor H1	NM_008285|Hrh1|15465|histamine receptor H1
mm9_v1_chr3_-_89856250_89856452	1.37782	AIRE.p2	AK030218|Ubap2l|74383|ubiquitin associated protein 2-like	AK031934|Ubap2l|74383|ubiquitin associated protein 2-like	BC023906|Ubap2l|74383|ubiquitin associated protein 2-like	BC029075|Ubap2l|74383|ubiquitin associated protein 2-like	AK088702|Ubap2l|74383|ubiquitin associated protein 2-like	AF276967|Ubap2l|74383|ubiquitin associated protein 2-like	AK048286|Ubap2l|74383|ubiquitin associated protein 2-like	AK079895|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165983|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165985|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165987|Ubap2l|74383|ubiquitin associated protein 2-like	NM_028475|Ubap2l|74383|ubiquitin associated protein 2-like	NM_153489|Ubap2l|74383|ubiquitin associated protein 2-like	AK014274|Ubap2l|74383|ubiquitin associated protein 2-like	AK152135|Ubap2l|74383|ubiquitin associated protein 2-like	AK040551|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165984|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165986|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165988|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr2_-_120796395_120796492	1.37701	AIRE.p2	AF061555|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1	NM_009461|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1
mm9_v1_chrM_-_13886_13905	1.36797	AIRE.p2	
mm9_v1_chr17_-_26232411_26232456	1.36555	AIRE.p2	AF153451|Nme4|56520|non-metastatic cells 4, protein expressed in	NM_019731|Nme4|56520|non-metastatic cells 4, protein expressed in	AK011573|Nme4|56520|non-metastatic cells 4, protein expressed in	AK017724|Nme4|56520|non-metastatic cells 4, protein expressed in	AF288690|Nme4|56520|non-metastatic cells 4, protein expressed in	BC027277|Nme4|56520|non-metastatic cells 4, protein expressed in	AK012805|Nme4|56520|non-metastatic cells 4, protein expressed in
mm9_v1_chr18_+_50287848_50287993	1.36323	AIRE.p2	AK004866|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK088381|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK147182|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK167060|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK166801|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK169077|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK152532|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	AK161655|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	BC022175|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	NM_008292|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4	X89998|Hsd17b4|15488|hydroxysteroid (17-beta) dehydrogenase 4
mm9_v1_chr11_-_99091732_99091806	1.35682	AIRE.p2	BC034509|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	BC061498|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	BC047141|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	AK018493|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	AK042961|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	EU327022|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	EU327023|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	EU327024|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	EU327025|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	EU327026|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	AK076177|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm9_v1_chr9_-_107673288_107673315	1.35579	AIRE.p2	AK133999|Rbm5|83486|RNA binding motif protein 5	BC042419|Rbm5|83486|RNA binding motif protein 5	BC023854|Rbm5|83486|RNA binding motif protein 5	BC054729|Rbm5|83486|RNA binding motif protein 5	BC060985|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr11_+_34214821_34214821	1.35321	AIRE.p2	BC072605|Fam196b|574403|family with sequence similarity 196, member B	NM_001025382|Fam196b|574403|family with sequence similarity 196, member B
mm9_v1_chr2_+_69560861_69560899	1.34321	AIRE.p2	BC016126|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC048905|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chrX_-_7544940_7545019	1.343	AIRE.p2	NM_008089|Gata1|14460|GATA binding protein 1	X15763|Gata1|14460|GATA binding protein 1	BC052653|Gata1|14460|GATA binding protein 1	AK146915|Gata1|14460|GATA binding protein 1
mm9_v1_chrX_-_6765768_6765839	1.33837	AIRE.p2	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr11_+_93905443_93905464	1.33353	AIRE.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr3_-_94846454_94846515	1.33196	AIRE.p2	AB029146|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	BC009005|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029144|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AK010969|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029142|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029143|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AB029145|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AF013099|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AF175574|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	NM_008951|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	BC016433|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	AK145524|Psmd4|19185|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
mm9_v1_chr3_+_145784635_145784876	1.32914	AIRE.p2	AK030819|Mcoln3|171166|mucolipin 3	AK035029|Mcoln3|171166|mucolipin 3	AK033008|Mcoln3|171166|mucolipin 3	AF475086|Mcoln3|171166|mucolipin 3	BC106856|Mcoln3|171166|mucolipin 3	BC106857|Mcoln3|171166|mucolipin 3	NM_134160|Mcoln3|171166|mucolipin 3	AY083531|Mcoln3|171166|mucolipin 3	AK191060|Mcoln3|171166|mucolipin 3	AK202150|Mcoln3|171166|mucolipin 3
mm9_v1_chr4_-_91066674_91066674	1.32296	AIRE.p2	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr1_+_53353919_53353984	1.31894	AIRE.p2	NM_145517|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK050385|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK052927|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	AK077562|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC023695|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC025572|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)	BC012315|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr3_-_95161071_95161127	1.31051	AIRE.p2	AK135833|Setdb1|84505|SET domain, bifurcated 1	BC079537|Setdb1|84505|SET domain, bifurcated 1	AF091628|Setdb1|84505|SET domain, bifurcated 1	AF546078|Setdb1|84505|SET domain, bifurcated 1	AY091600|Setdb1|84505|SET domain, bifurcated 1	BC060173|Setdb1|84505|SET domain, bifurcated 1	AK132202|Setdb1|84505|SET domain, bifurcated 1	NM_001163641|Setdb1|84505|SET domain, bifurcated 1	NM_001163642|Setdb1|84505|SET domain, bifurcated 1	NM_018877|Setdb1|84505|SET domain, bifurcated 1
mm9_v1_chr13_+_49777464_49777562	1.29893	AIRE.p2	NM_172015|Iars|105148|isoleucine-tRNA synthetase	BC067029|Iars|105148|isoleucine-tRNA synthetase	AK087992|Iars|105148|isoleucine-tRNA synthetase	AK133856|Iars|105148|isoleucine-tRNA synthetase	AK136132|Iars|105148|isoleucine-tRNA synthetase
mm9_v1_chr1_-_180267841_180267909	1.29813	AIRE.p2	AF073992|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159956|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK037517|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK168657|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK029944|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159084|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr3_+_63780020_63780051	1.29573	AIRE.p2	AK146654|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr4_+_122731563_122731731	1.29257	AIRE.p2	AK188355|Trit1|66966|tRNA isopentenyltransferase 1	AK219389|Trit1|66966|tRNA isopentenyltransferase 1	AK189511|Trit1|66966|tRNA isopentenyltransferase 1
mm9_v1_chr7_-_85992096_85992145	1.2873	AIRE.p2	BC031930|Det1|76375|de-etiolated homolog 1 (Arabidopsis)	NM_029585|Det1|76375|de-etiolated homolog 1 (Arabidopsis)	AK011666|Det1|76375|de-etiolated homolog 1 (Arabidopsis)
mm9_v1_chr7_+_25055436_25055599	1.28566	AIRE.p2	AK132229|Zfp93|22755|zinc finger protein 93	NM_009567|Zfp93|22755|zinc finger protein 93	U46186|Zfp93|22755|zinc finger protein 93	AK146095|Zfp93|22755|zinc finger protein 93	AK165630|Zfp93|22755|zinc finger protein 93	AK040325|Zfp93|22755|zinc finger protein 93	AK028905|Zfp93|22755|zinc finger protein 93
mm9_v1_chr12_+_82049290_82049329	1.28051	AIRE.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chrX_+_45610055_45610110	1.27744	AIRE.p2	AK134348|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	BC062165|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK165575|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK165628|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK012492|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	BC082590|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK134784|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AY316163|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	AK172924|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)	NM_028276|Utp14a|72554|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)
mm9_v1_chr11_+_53138176_53138190	1.25816	AIRE.p2	AK010803|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK027985|Zcchc10|67966|zinc finger, CCHC domain containing 10	BC025078|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK020177|Zcchc10|67966|zinc finger, CCHC domain containing 10	AK169856|Zcchc10|67966|zinc finger, CCHC domain containing 10	BC087902|Zcchc10|67966|zinc finger, CCHC domain containing 10	NM_026479|Zcchc10|67966|zinc finger, CCHC domain containing 10
mm9_v1_chr2_+_74707394_74707441	1.2516	AIRE.p2	AK207939|Mtx2|53375|metaxin 2	AK212612|Mtx2|53375|metaxin 2	AK216047|Mtx2|53375|metaxin 2
mm9_v1_chr4_-_147183894_147183948	1.24167	AIRE.p2	NM_001127189|Gm13157|100041677|predicted gene 13157	AK011687|2610036A22Rik|70190|RIKEN cDNA 2610036A22 gene
mm9_v1_chr5_-_140797483_140797532	1.22826	AIRE.p2	AK200567|Mad1l1|17120|mitotic arrest deficient 1-like 1	AF083812|Mad1l1|17120|mitotic arrest deficient 1-like 1	AF083813|Mad1l1|17120|mitotic arrest deficient 1-like 1	BC010702|Mad1l1|17120|mitotic arrest deficient 1-like 1	AK136981|Mad1l1|17120|mitotic arrest deficient 1-like 1	NM_010752|Mad1l1|17120|mitotic arrest deficient 1-like 1
mm9_v1_chr19_-_40261753_40261779	1.22768	AIRE.p2	BC022151|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC023894|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AY227736|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC034831|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC016494|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AK050082|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	NM_145499|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70
mm9_v1_chr16_+_55966387_55966447	1.22224	AIRE.p2	NM_024218|Rpl24|68193|ribosomal protein L24
mm9_v1_chr12_+_16817741_16817769	1.20359	AIRE.p2	AK149061|E2f6|50496|E2F transcription factor 6
mm9_v1_chr2_-_144376513_144376606	1.20156	AIRE.p2	AF039563|Rbbp9|26450|retinoblastoma binding protein 9	BC050201|Rbbp9|26450|retinoblastoma binding protein 9	AK017606|Rbbp9|26450|retinoblastoma binding protein 9	BC011107|Rbbp9|26450|retinoblastoma binding protein 9	BC147814|Rbbp9|26450|retinoblastoma binding protein 9	BC147815|Rbbp9|26450|retinoblastoma binding protein 9	AK076944|Rbbp9|26450|retinoblastoma binding protein 9	NM_015754|Rbbp9|26450|retinoblastoma binding protein 9
mm9_v1_chr15_+_102126735_102126806	1.20112	AIRE.p2	AK129072|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	AY588413|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	BC145844|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	BC145846|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)
mm9_v1_chr16_-_32079317_32079415	1.19967	AIRE.p2	BC086650|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2	NM_177326|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr10_+_68996455_68996596	1.19884	AIRE.p2	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr6_-_49195555_49195581	1.18607	AIRE.p2	AK164994|Tra2a|101214|transformer 2 alpha homolog (Drosophila)
mm9_v1_chr13_+_78337168_78337277	1.18396	AIRE.p2	AK082108|A830082K12Rik|320174|RIKEN cDNA A830082K12 gene
mm9_v1_chr17_-_23908488_23908570	1.17866	AIRE.p2	AK168389|Flywch1|224613|FLYWCH-type zinc finger 1	NM_153791|Flywch1|224613|FLYWCH-type zinc finger 1
mm9_v1_chrX_+_50911075_50911243	1.17322	AIRE.p2	NM_028375|Cxx1c|72865|CAAX box 1 homolog C (human)	AK013603|Cxx1c|72865|CAAX box 1 homolog C (human)	BC031701|Cxx1c|72865|CAAX box 1 homolog C (human)
mm9_v1_chrX_-_103207106_103207254	1.15946	AIRE.p2	AK144696|Magt1|67075|magnesium transporter 1	AK012185|Magt1|67075|magnesium transporter 1	AK013243|Magt1|67075|magnesium transporter 1	AK136622|Magt1|67075|magnesium transporter 1	BC003881|Magt1|67075|magnesium transporter 1	AK018623|Magt1|67075|magnesium transporter 1	AK010320|Magt1|67075|magnesium transporter 1	DQ000005|Magt1|67075|magnesium transporter 1	NM_001190409|Magt1|67075|magnesium transporter 1	NM_025952|Magt1|67075|magnesium transporter 1
mm9_v1_chr2_-_4573118_4573191	1.14047	AIRE.p2	AK139720|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC058631|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC004573|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC028306|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	NM_026045|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135890|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK035073|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135707|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr4_-_107743887_107743940	1.13937	AIRE.p2	AK002425|Scp2|20280|sterol carrier protein 2, liver
mm9_v1_chr1_-_196957694_196957780	1.13546	AIRE.p2	AK017702|Cr1l|12946|complement component (3b/4b) receptor 1-like	AK004825|Cr1l|12946|complement component (3b/4b) receptor 1-like	NM_013499|Cr1l|12946|complement component (3b/4b) receptor 1-like
mm9_v1_chr19_+_46781939_46782006	1.12787	AIRE.p2	AK006571|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AF166383|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AK011320|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	BC145663|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AK002801|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	BC013468|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr1_+_137914635_137914732	1.11729	AIRE.p2	NM_001160146|Tmem9|66241|transmembrane protein 9
mm9_v1_chr4_-_120597563_120597650	1.11249	AIRE.p2	BC023360|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	AK014134|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_001160043|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)	NM_028457|Dem1|73172|defects in morphology 1 homolog (S. cerevisiae)
mm9_v1_chr8_+_73053287_73053425	1.10964	AIRE.p2	BC003739|Fkbp8|14232|FK506 binding protein 8	AY225340|Fkbp8|14232|FK506 binding protein 8	AK216136|Fkbp8|14232|FK506 binding protein 8	AF030635|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr4_+_15211137_15211173	1.10081	AIRE.p2	AK162736|Tmem64|100201|transmembrane protein 64
mm9_v1_chr16_+_32914183_32914232	1.08674	AIRE.p2	AK155550|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	NM_001081255|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK076529|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC151058|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC157924|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC172144|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK133482|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3
mm9_v1_chr15_-_81222718_81222746	1.08331	AIRE.p2	AK205921|St13|70356|suppression of tumorigenicity 13
mm9_v1_chr5_+_144309573_144309659	1.06815	AIRE.p2	NM_026050|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	NM_133703|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK075875|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK076127|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC012231|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK156614|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC100440|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK165304|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK014805|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK005298|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene
mm9_v1_chr16_-_55934909_55934966	1.06711	AIRE.p2	BC065773|Cep97|74201|centrosomal protein 97	AK079884|Cep97|74201|centrosomal protein 97	AK154885|Cep97|74201|centrosomal protein 97	AK012971|Cep97|74201|centrosomal protein 97	AK080249|Cep97|74201|centrosomal protein 97	BC067049|Cep97|74201|centrosomal protein 97	NM_001159364|Cep97|74201|centrosomal protein 97	NM_001159365|Cep97|74201|centrosomal protein 97	NM_001159366|Cep97|74201|centrosomal protein 97	NM_028815|Cep97|74201|centrosomal protein 97	AK040079|Cep97|74201|centrosomal protein 97
mm9_v1_chr11_+_115265054_115265195	1.06229	AIRE.p2	BC028523|Ict1|68572|immature colon carcinoma transcript 1	BC079614|Ict1|68572|immature colon carcinoma transcript 1	AK003192|Ict1|68572|immature colon carcinoma transcript 1	NM_026729|Ict1|68572|immature colon carcinoma transcript 1	AK003286|Ict1|68572|immature colon carcinoma transcript 1
mm9_v1_chr17_-_23330163_23330200	1.05761	AIRE.p2	BC061205|Zfp40|22700|zinc finger protein 40	AK164585|Zfp40|22700|zinc finger protein 40	BC065097|Zfp40|22700|zinc finger protein 40	NM_009555|Zfp40|22700|zinc finger protein 40	AK049894|Zfp40|22700|zinc finger protein 40
mm9_v1_chr7_-_52560744_52560788	1.03901	AIRE.p2	AK003969|Trpm4|68667|transient receptor potential cation channel, subfamily M, member 4
mm9_v1_chr3_-_65940346_65940359	1.02603	AIRE.p2	AB085189|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AK013398|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_028357|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chr4_+_140257340_140257464	1.02215	AIRE.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr11_-_58615400_58615517	1.01816	AIRE.p2	FJ468008|Fam183b|75429|family with sequence similarity 183, member B	BC094630|Fam183b|75429|family with sequence similarity 183, member B	BC061254|Fam183b|75429|family with sequence similarity 183, member B	BC048748|Fam183b|75429|family with sequence similarity 183, member B	AK157972|Fam183b|75429|family with sequence similarity 183, member B	AK013920|Fam183b|75429|family with sequence similarity 183, member B	NM_001162878|Fam183b|75429|family with sequence similarity 183, member B	NM_029283|Fam183b|75429|family with sequence similarity 183, member B	BC126964|Fam183b|75429|family with sequence similarity 183, member B	BC117741|Fam183b|75429|family with sequence similarity 183, member B
mm9_v1_chr1_+_159436875_159436945	1.01442	AIRE.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr15_-_98748371_98748661	1.00797	AIRE.p2	AY052398|Lmbr1l|74775|limb region 1 like	AK003656|Lmbr1l|74775|limb region 1 like	BC023397|Lmbr1l|74775|limb region 1 like	AK170328|Lmbr1l|74775|limb region 1 like	AK143891|Lmbr1l|74775|limb region 1 like	AK030589|Lmbr1l|74775|limb region 1 like	AK049110|Lmbr1l|74775|limb region 1 like	NM_029098|Lmbr1l|74775|limb region 1 like	AK154968|Lmbr1l|74775|limb region 1 like
mm9_v1_chr10_+_97028134_97028280	1.00635	AIRE.p2	NM_008524|Lum|17022|lumican
mm9_v1_chr9_+_104955563_104955826	1.00605	AIRE.p2	AK008592|Mrpl3|94062|mitochondrial ribosomal protein L3	AK145687|Mrpl3|94062|mitochondrial ribosomal protein L3	AK169272|Mrpl3|94062|mitochondrial ribosomal protein L3	NM_053159|Mrpl3|94062|mitochondrial ribosomal protein L3	AK077857|Mrpl3|94062|mitochondrial ribosomal protein L3	AK002509|Mrpl3|94062|mitochondrial ribosomal protein L3	BC011128|Mrpl3|94062|mitochondrial ribosomal protein L3	BC016586|Mrpl3|94062|mitochondrial ribosomal protein L3	BC034877|Mrpl3|94062|mitochondrial ribosomal protein L3	AB049633|Mrpl3|94062|mitochondrial ribosomal protein L3	AK217246|Mrpl3|94062|mitochondrial ribosomal protein L3
mm9_v1_chr9_-_64188945_64189063	0.996652	AIRE.p2	AK035357|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK032451|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	BC056939|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK173310|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK150851|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK151780|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK153433|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	NM_001001295|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like
mm9_v1_chr6_-_6528581_6528672	0.996588	AIRE.p2	U41626|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK135462|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK167914|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC023490|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC058117|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK161690|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	X83589|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK160432|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	NM_009169|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK141911|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1
mm9_v1_chr17_-_5440223_5440262	0.993983	AIRE.p2	BC019420|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK043276|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK158107|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK088025|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK155326|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK009851|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK017626|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	AK003559|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene	NM_027457|5730437N04Rik|70544|RIKEN cDNA 5730437N04 gene
mm9_v1_chr15_+_102126686_102126729	0.991672	AIRE.p2	BC082603|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	NM_001014976|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)
mm9_v1_chr2_+_28323580_28323619	0.98506	AIRE.p2	AK051184|Mrps2|118451|mitochondrial ribosomal protein S2	AK172120|Mrps2|118451|mitochondrial ribosomal protein S2	NM_001166031|Mrps2|118451|mitochondrial ribosomal protein S2	NM_080452|Mrps2|118451|mitochondrial ribosomal protein S2	AK154131|Mrps2|118451|mitochondrial ribosomal protein S2	AB055389|Mrps2|118451|mitochondrial ribosomal protein S2	AK160129|Mrps2|118451|mitochondrial ribosomal protein S2	AK165956|Mrps2|118451|mitochondrial ribosomal protein S2	AK156412|Mrps2|118451|mitochondrial ribosomal protein S2	AK171699|Mrps2|118451|mitochondrial ribosomal protein S2	AK172432|Mrps2|118451|mitochondrial ribosomal protein S2	BC048377|Mrps2|118451|mitochondrial ribosomal protein S2	BC033460|Mrps2|118451|mitochondrial ribosomal protein S2	BC060503|Mrps2|118451|mitochondrial ribosomal protein S2
mm9_v1_chr5_+_135058559_135058657	0.976311	AIRE.p2	NM_020022|Rfc2|19718|replication factor C (activator 1) 2	BC099370|Rfc2|19718|replication factor C (activator 1) 2	AK154681|Rfc2|19718|replication factor C (activator 1) 2	BC023028|Rfc2|19718|replication factor C (activator 1) 2	AK011649|Rfc2|19718|replication factor C (activator 1) 2	AK011353|Rfc2|19718|replication factor C (activator 1) 2	AK075997|Rfc2|19718|replication factor C (activator 1) 2
mm9_v1_chr4_+_126354857_126354998	0.974226	AIRE.p2	NM_011970|Psmb2|26445|proteasome (prosome, macropain) subunit, beta type 2	AK078487|Psmb2|26445|proteasome (prosome, macropain) subunit, beta type 2	AK164463|Psmb2|26445|proteasome (prosome, macropain) subunit, beta type 2	BC008265|Psmb2|26445|proteasome (prosome, macropain) subunit, beta type 2	AF060090|Psmb2|26445|proteasome (prosome, macropain) subunit, beta type 2
mm9_v1_chr14_-_20796199_20796254	0.973711	AIRE.p2	AK075698|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK160396|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK012405|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr15_-_102501463_102501513	0.973117	AIRE.p2	BC081437|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK002311|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK012279|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK007747|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK075793|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	NM_026468|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
mm9_v1_chr13_-_21875234_21875270	0.971076	AIRE.p2	BC107287|Hist1h3i|319153|histone cluster 1, H3i	BC127148|Hist1h3i|319153|histone cluster 1, H3i	BC116383|Hist1h3i|319153|histone cluster 1, H3i	AK155722|Hist1h3i|319153|histone cluster 1, H3i	NM_178207|Hist1h3i|319153|histone cluster 1, H3i
mm9_v1_chr19_+_32694494_32694583	0.969294	AIRE.p2	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr5_-_145927883_145927892	0.966413	AIRE.p2	AK088764|Ptcd1|71799|pentatricopeptide repeat domain 1	BC004766|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr4_-_126738303_126738384	0.960582	AIRE.p2	BC064774|Zmym1|68310|zinc finger, MYM domain containing 1	AK138687|Zmym1|68310|zinc finger, MYM domain containing 1	AK166769|Zmym1|68310|zinc finger, MYM domain containing 1	AK049568|Zmym1|68310|zinc finger, MYM domain containing 1	AK035618|Zmym1|68310|zinc finger, MYM domain containing 1	NM_026670|Zmym1|68310|zinc finger, MYM domain containing 1	AK167508|Zmym1|68310|zinc finger, MYM domain containing 1	AK016783|Zmym1|68310|zinc finger, MYM domain containing 1	AK044538|Zmym1|68310|zinc finger, MYM domain containing 1
mm9_v1_chr3_+_82859422_82859482	0.960171	AIRE.p2	AK080068|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK077197|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	NM_016784|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK075993|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK076007|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr6_+_120413200_120413305	0.95751	AIRE.p2	NM_008359|Il17ra|16172|interleukin 17 receptor A	AK036587|Il17ra|16172|interleukin 17 receptor A	AK080226|Il17ra|16172|interleukin 17 receptor A
mm9_v1_chr13_-_21532756_21532926	0.94973	AIRE.p2	BC089360|Pgbd1|319207|piggyBac transposable element derived 1	BC059882|Pgbd1|319207|piggyBac transposable element derived 1	NM_001012311|Pgbd1|319207|piggyBac transposable element derived 1	NM_001162920|Pgbd1|319207|piggyBac transposable element derived 1	AK076559|Pgbd1|319207|piggyBac transposable element derived 1
mm9_v1_chr19_+_18787654_18787754	0.947926	AIRE.p2	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chr3_-_10331334_10331440	0.941938	AIRE.p2	BC055722|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AF042730|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160467|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK083238|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK145472|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK011770|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160203|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK165977|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	BC049080|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK078406|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK152774|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK147778|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK153457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK168457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	NM_018864|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1
mm9_v1_chrX_+_146981959_146981987	0.941705	AIRE.p2	NM_001102446|Alas2|11656|aminolevulinic acid synthase 2, erythroid	NM_009653|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK077610|Alas2|11656|aminolevulinic acid synthase 2, erythroid
mm9_v1_chr10_-_129717244_129717295	0.939854	AIRE.p2	BC042639|Neurod4|11923|neurogenic differentiation 4	AK012183|Neurod4|11923|neurogenic differentiation 4	BC054391|Neurod4|11923|neurogenic differentiation 4	NM_007501|Neurod4|11923|neurogenic differentiation 4
mm9_v1_chr10_+_128143313_128143342	0.936142	AIRE.p2	AK012808|Pmel|20431|premelanosome protein	AK131956|Pmel|20431|premelanosome protein	NM_021882|Pmel|20431|premelanosome protein	BC075667|Pmel|20431|premelanosome protein	BC082555|Pmel|20431|premelanosome protein	U14133|Pmel|20431|premelanosome protein
mm9_v1_chr11_+_105927362_105927420	0.928627	AIRE.p2	AK034014|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK140143|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK147942|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK047078|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK010072|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	AK167963|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	BC029182|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I	NM_027346|Taco1|70207|translational activator of mitochondrially encoded cytochrome c oxidase I
mm9_v1_chr9_+_72122785_72122816	0.925822	AIRE.p2	AK169721|Zfp280d|235469|zinc finger protein 280D	BC079878|Zfp280d|235469|zinc finger protein 280D	AK045173|Zfp280d|235469|zinc finger protein 280D	AK146597|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chrX_+_20235512_20235607	0.924179	AIRE.p2	AK088057|Uba1|22201|ubiquitin-like modifier activating enzyme 1	AK088528|Uba1|22201|ubiquitin-like modifier activating enzyme 1	NM_009457|Uba1|22201|ubiquitin-like modifier activating enzyme 1	BC145984|Uba1|22201|ubiquitin-like modifier activating enzyme 1	BC138200|Uba1|22201|ubiquitin-like modifier activating enzyme 1	D10576|Uba1|22201|ubiquitin-like modifier activating enzyme 1
mm9_v1_chr5_+_136592559_136592606	0.923511	AIRE.p2	AK158610|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	NM_011293|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	AK158644|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	BC042939|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	D85818|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J
mm9_v1_chr12_+_86311859_86311909	0.916288	AIRE.p2	NM_028632|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC094619|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC033045|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
mm9_v1_chr7_-_151656610_151656667	0.910323	AIRE.p2	U03184|Cttn|13043|cortactin	BC011434|Cttn|13043|cortactin	AK168871|Cttn|13043|cortactin	AK165555|Cttn|13043|cortactin	AK168699|Cttn|13043|cortactin	AK148010|Cttn|13043|cortactin	AK146856|Cttn|13043|cortactin	NM_007803|Cttn|13043|cortactin	AK084249|Cttn|13043|cortactin	AK168945|Cttn|13043|cortactin
mm9_v1_chr16_-_4077714_4077843	0.903972	AIRE.p2	AK188521|Trap1|68015|TNF receptor-associated protein 1	BC006864|Trap1|68015|TNF receptor-associated protein 1	BC006685|Trap1|68015|TNF receptor-associated protein 1	AK002409|Trap1|68015|TNF receptor-associated protein 1	AK088471|Trap1|68015|TNF receptor-associated protein 1	AK162067|Trap1|68015|TNF receptor-associated protein 1	AK167181|Trap1|68015|TNF receptor-associated protein 1	BC022912|Trap1|68015|TNF receptor-associated protein 1	AK010341|Trap1|68015|TNF receptor-associated protein 1	NM_026508|Trap1|68015|TNF receptor-associated protein 1	AK143494|Trap1|68015|TNF receptor-associated protein 1
mm9_v1_chr1_+_129101570_129101606	0.901107	AIRE.p2	AK049587|Mgat5|107895|mannoside acetylglucosaminyltransferase 5	AK030402|Mgat5|107895|mannoside acetylglucosaminyltransferase 5	AK036567|Mgat5|107895|mannoside acetylglucosaminyltransferase 5
mm9_v1_chr7_-_107731579_107731643	0.896194	AIRE.p2	AK077636|Mrpl48|52443|mitochondrial ribosomal protein L48	BC037190|Mrpl48|52443|mitochondrial ribosomal protein L48	AK019161|Mrpl48|52443|mitochondrial ribosomal protein L48	AK171917|Mrpl48|52443|mitochondrial ribosomal protein L48	NM_198831|Mrpl48|52443|mitochondrial ribosomal protein L48
mm9_v1_chr15_+_6395311_6395349	0.894768	AIRE.p2	BC011137|C9|12279|complement component 9	NM_013485|C9|12279|complement component 9
mm9_v1_chr10_+_39332934_39333058	0.887232	AIRE.p2	AK037407|Traf3ip2|103213|TRAF3 interacting protein 2	BC138234|Traf3ip2|103213|TRAF3 interacting protein 2	BC138235|Traf3ip2|103213|TRAF3 interacting protein 2	AK031556|Traf3ip2|103213|TRAF3 interacting protein 2	AK098107|Traf3ip2|103213|TRAF3 interacting protein 2	BC096483|Traf3ip2|103213|TRAF3 interacting protein 2
mm9_v1_chr7_+_106415956_106416023	0.885999	AIRE.p2	BC053039|Mtap6|17760|microtubule-associated protein 6	NM_001048167|Mtap6|17760|microtubule-associated protein 6	NM_010837|Mtap6|17760|microtubule-associated protein 6	AK082709|Mtap6|17760|microtubule-associated protein 6	AK087413|Mtap6|17760|microtubule-associated protein 6
mm9_v1_chr17_-_26206459_26206461	0.884807	AIRE.p2	AK080103|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)
mm9_v1_chr18_-_36942673_36942858	0.883056	AIRE.p2	AK211613|Hars|15115|histidyl-tRNA synthetase	AK011685|Hars|15115|histidyl-tRNA synthetase	AK077437|Hars|15115|histidyl-tRNA synthetase	AK166826|Hars|15115|histidyl-tRNA synthetase	AK150081|Hars|15115|histidyl-tRNA synthetase	AK152329|Hars|15115|histidyl-tRNA synthetase	BC020088|Hars|15115|histidyl-tRNA synthetase	AK088824|Hars|15115|histidyl-tRNA synthetase	AK146922|Hars|15115|histidyl-tRNA synthetase	AK166892|Hars|15115|histidyl-tRNA synthetase	U39473|Hars|15115|histidyl-tRNA synthetase	NM_008214|Hars|15115|histidyl-tRNA synthetase
mm9_v1_chr12_+_17277227_17277235	0.879162	AIRE.p2	AK192703|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr2_+_13504271_13504305	0.86656	AIRE.p2	
mm9_v1_chrX_-_92853721_92853847	0.864817	AIRE.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr5_-_21290925_21290949	0.856582	AIRE.p2	U53208|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161347|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr11_+_4795308_4795373	0.849684	AIRE.p2	AK040311|Thoc5|107829|THO complex 5	AK050734|Thoc5|107829|THO complex 5	NM_172438|Thoc5|107829|THO complex 5	BC039758|Thoc5|107829|THO complex 5	AK087099|Thoc5|107829|THO complex 5
mm9_v1_chr10_+_62849310_62849422	0.844263	AIRE.p2	NM_013888|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AK032207|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AF132906|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC013501|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC071211|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12
mm9_v1_chr2_+_24817941_24817990	0.8312	AIRE.p2	AK152000|Wdr85|67228|WD repeat domain 85	AK153537|Wdr85|67228|WD repeat domain 85	NM_026044|Wdr85|67228|WD repeat domain 85	BC086486|Wdr85|67228|WD repeat domain 85	AK013297|Wdr85|67228|WD repeat domain 85	AK078448|Wdr85|67228|WD repeat domain 85	AK087998|Wdr85|67228|WD repeat domain 85	BC056962|Wdr85|67228|WD repeat domain 85
mm9_v1_chr16_+_37916538_37916581	0.82997	AIRE.p2	AK141990|Gpr156|239845|G protein-coupled receptor 156	BC059227|Gpr156|239845|G protein-coupled receptor 156	NM_153394|Gpr156|239845|G protein-coupled receptor 156
mm9_v1_chr17_+_46848407_46848441	0.824091	AIRE.p2	BC003424|Pex6|224824|peroxisomal biogenesis factor 6	NM_145488|Pex6|224824|peroxisomal biogenesis factor 6	AK083898|Pex6|224824|peroxisomal biogenesis factor 6	AK143173|Pex6|224824|peroxisomal biogenesis factor 6	AK030565|Pex6|224824|peroxisomal biogenesis factor 6	AK220525|Pex6|224824|peroxisomal biogenesis factor 6
mm9_v1_chr5_-_118605455_118605474	0.82406	AIRE.p2	AK031815|Fbxw8|231672|F-box and WD-40 domain protein 8	AK053794|Fbxw8|231672|F-box and WD-40 domain protein 8	NM_172721|Fbxw8|231672|F-box and WD-40 domain protein 8	AK134291|Fbxw8|231672|F-box and WD-40 domain protein 8
mm9_v1_chr9_-_48719069_48719203	0.820384	AIRE.p2	AY605711|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	AF513221|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	X72395|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC144799|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	BC145743|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	M74425|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_001099644|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A	NM_013561|Htr3a|15561|5-hydroxytryptamine (serotonin) receptor 3A
mm9_v1_chr11_+_93905557_93905590	0.815669	AIRE.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr10_+_122701051_122701245	0.814976	AIRE.p2	AK139403|Fam19a2|268354|family with sequence similarity 19, member A2	NM_182807|Fam19a2|268354|family with sequence similarity 19, member A2	AK140763|Fam19a2|268354|family with sequence similarity 19, member A2	BC027082|Fam19a2|268354|family with sequence similarity 19, member A2
mm9_v1_chr5_+_89012596_89012599	0.812744	AIRE.p2	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr5_-_75440586_75440675	0.810643	AIRE.p2	BC048435|Chic2|74277|cysteine-rich hydrophobic domain 2	AK172289|Chic2|74277|cysteine-rich hydrophobic domain 2	AK006962|Chic2|74277|cysteine-rich hydrophobic domain 2	NM_028850|Chic2|74277|cysteine-rich hydrophobic domain 2
mm9_v1_chr16_+_23520391_23520449	0.809647	AIRE.p2	
mm9_v1_chr16_+_16213434_16213437	0.808952	AIRE.p2	AK004650|Pkp2|67451|plakophilin 2	AK004731|Pkp2|67451|plakophilin 2	AK049481|Pkp2|67451|plakophilin 2	AK162000|Pkp2|67451|plakophilin 2	AK167660|Pkp2|67451|plakophilin 2	BC138252|Pkp2|67451|plakophilin 2	BC138253|Pkp2|67451|plakophilin 2	NM_026163|Pkp2|67451|plakophilin 2
mm9_v1_chr7_-_30691111_30691122	0.808028	AIRE.p2	AK147732|Zfp27|22689|zinc finger protein 27	NM_001037707|Zfp27|22689|zinc finger protein 27	NM_011754|Zfp27|22689|zinc finger protein 27
mm9_v1_chr2_+_127034072_127034128	0.805171	AIRE.p2	AK081920|Snrnp200|320632|small nuclear ribonucleoprotein 200 (U5)	AK149291|Snrnp200|320632|small nuclear ribonucleoprotein 200 (U5)
mm9_v1_chr10_+_111409750_111409849	0.801867	AIRE.p2	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr12_+_16817770_16817770	0.801484	AIRE.p2	NM_033270|E2f6|50496|E2F transcription factor 6
mm9_v1_chr5_+_66154740_66154759	0.797461	AIRE.p2	BC054549|N4bp2|333789|NEDD4 binding protein 2	NM_001024917|N4bp2|333789|NEDD4 binding protein 2
mm9_v1_chr6_+_47827641_47827690	0.797379	AIRE.p2	AK030516|Zfp282|101095|zinc finger protein 282	AK081854|Zfp282|101095|zinc finger protein 282	BC025581|Zfp282|101095|zinc finger protein 282
mm9_v1_chr14_-_20796255_20796277	0.797098	AIRE.p2	AK003588|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK036138|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr8_-_114378162_114378252	0.796021	AIRE.p2	AK160532|Cfdp1|23837|craniofacial development protein 1	BC005589|Cfdp1|23837|craniofacial development protein 1	AB010828|Cfdp1|23837|craniofacial development protein 1	NM_011801|Cfdp1|23837|craniofacial development protein 1	Y08219|Cfdp1|23837|craniofacial development protein 1	AK133989|Cfdp1|23837|craniofacial development protein 1
mm9_v1_chr18_+_42435006_42435038	0.791351	AIRE.p2	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chr4_-_12015073_12015153	0.788881	AIRE.p2	AK017238|Tmem67|329795|transmembrane protein 67	AK039177|Tmem67|329795|transmembrane protein 67	AK042835|Tmem67|329795|transmembrane protein 67	AK133059|Tmem67|329795|transmembrane protein 67	AK045429|Tmem67|329795|transmembrane protein 67	NM_177861|Tmem67|329795|transmembrane protein 67	AK077246|Tmem67|329795|transmembrane protein 67
mm9_v1_chr2_+_32484995_32485061	0.78101	AIRE.p2	NM_021515|Ak1|11636|adenylate kinase 1	AJ010109|Ak1|11636|adenylate kinase 1	BC054366|Ak1|11636|adenylate kinase 1
mm9_v1_chr11_+_26287083_26287211	0.780618	AIRE.p2	AF513619|Fancl|67030|Fanconi anemia, complementation group L	NM_025923|Fancl|67030|Fanconi anemia, complementation group L	AK011520|Fancl|67030|Fanconi anemia, complementation group L	AK168538|Fancl|67030|Fanconi anemia, complementation group L	AK008605|Fancl|67030|Fanconi anemia, complementation group L	AK011903|Fancl|67030|Fanconi anemia, complementation group L	AK017431|Fancl|67030|Fanconi anemia, complementation group L	AK020981|Fancl|67030|Fanconi anemia, complementation group L	AK076017|Fancl|67030|Fanconi anemia, complementation group L	AK018018|Fancl|67030|Fanconi anemia, complementation group L	AK011752|Fancl|67030|Fanconi anemia, complementation group L	BC032876|Fancl|67030|Fanconi anemia, complementation group L
mm9_v1_chr6_-_128476708_128476738	0.780492	AIRE.p2	M93264|Pzp|11287|pregnancy zone protein	NM_007376|Pzp|11287|pregnancy zone protein
mm9_v1_chr17_-_37095420_37095443	0.780148	AIRE.p2	AK005976|Znrd1|66136|zinc ribbon domain containing, 1	AK019152|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chr10_+_42580317_42580598	0.776227	AIRE.p2	NM_172938|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AF397911|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK034171|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	BC043310|Scml4|268297|sex comb on midleg-like 4 (Drosophila)	AK047972|Scml4|268297|sex comb on midleg-like 4 (Drosophila)
mm9_v1_chr9_-_53475563_53475590	0.775198	AIRE.p2	BC019661|Cul5|75717|cullin 5	AK046030|Cul5|75717|cullin 5
mm9_v1_chr5_+_136108487_136108731	0.774011	AIRE.p2	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr15_+_76730338_76730405	0.769895	AIRE.p2	AK013148|Commd5|66398|COMM domain containing 5	AK010045|Commd5|66398|COMM domain containing 5	NM_025536|Commd5|66398|COMM domain containing 5	BC025891|Commd5|66398|COMM domain containing 5
mm9_v1_chr14_-_48037874_48037887	0.758228	AIRE.p2	AK164575|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK036384|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK135820|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5
mm9_v1_chr5_-_33128264_33128313	0.757813	AIRE.p2	AK033483|Pisd|320951|phosphatidylserine decarboxylase	AK162028|Pisd|320951|phosphatidylserine decarboxylase	BC094594|Pisd|320951|phosphatidylserine decarboxylase	BC070408|Pisd|320951|phosphatidylserine decarboxylase	AK034656|Pisd|320951|phosphatidylserine decarboxylase	AK162737|Pisd|320951|phosphatidylserine decarboxylase	BC116695|Pisd|320951|phosphatidylserine decarboxylase	BC117509|Pisd|320951|phosphatidylserine decarboxylase	NM_177298|Pisd|320951|phosphatidylserine decarboxylase	AK167554|Pisd|320951|phosphatidylserine decarboxylase
mm9_v1_chr6_+_113573980_113574047	0.757737	AIRE.p2	AK159238|Vhl|22346|von Hippel-Lindau tumor suppressor	U12570|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171604|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171264|Vhl|22346|von Hippel-Lindau tumor suppressor	NM_009507|Vhl|22346|von Hippel-Lindau tumor suppressor	S76748|Vhl|22346|von Hippel-Lindau tumor suppressor	BC052417|Vhl|22346|von Hippel-Lindau tumor suppressor	AK161408|Vhl|22346|von Hippel-Lindau tumor suppressor
mm9_v1_chr6_-_114871769_114871855	0.757207	AIRE.p2	BC048841|Vgll4|232334|vestigial like 4 (Drosophila)	NM_177683|Vgll4|232334|vestigial like 4 (Drosophila)	BC060305|Vgll4|232334|vestigial like 4 (Drosophila)	AK144447|Vgll4|232334|vestigial like 4 (Drosophila)	AK078466|Vgll4|232334|vestigial like 4 (Drosophila)
mm9_v1_chr2_+_104430617_104430708	0.755759	AIRE.p2	AK158169|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_001037326|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_145529|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_177253|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC003241|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC058605|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	AK028899|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3
mm9_v1_chr18_-_43847367_43847426	0.755432	AIRE.p2	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr16_-_75766992_75767062	0.747847	AIRE.p2	BC039701|Hspa13|110920|heat shock protein 70 family, member 13	AK167839|Hspa13|110920|heat shock protein 70 family, member 13	BC094508|Hspa13|110920|heat shock protein 70 family, member 13	BC085181|Hspa13|110920|heat shock protein 70 family, member 13	AK049011|Hspa13|110920|heat shock protein 70 family, member 13	AK021006|Hspa13|110920|heat shock protein 70 family, member 13	AK030553|Hspa13|110920|heat shock protein 70 family, member 13	AK034643|Hspa13|110920|heat shock protein 70 family, member 13	NM_030201|Hspa13|110920|heat shock protein 70 family, member 13
mm9_v1_chr1_-_141456740_141456821	0.744318	AIRE.p2	BC111870|Cfhr1|50702|complement factor H-related 1	M29008|Cfhr1|50702|complement factor H-related 1	NM_015780|Cfhr1|50702|complement factor H-related 1
mm9_v1_chrX_+_97710893_97711108	0.738823	AIRE.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr3_-_89215727_89215795	0.737305	AIRE.p2	BC025817|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	BC046769|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	NM_177041|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	AK161929|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)	AK044501|Flad1|319945|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm9_v1_chr7_+_74792295_74792398	0.737002	AIRE.p2	AK086049|Ttc23|67009|tetratricopeptide repeat domain 23	AK165626|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168475|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168476|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168477|Ttc23|67009|tetratricopeptide repeat domain 23	NM_025905|Ttc23|67009|tetratricopeptide repeat domain 23	AK141754|Ttc23|67009|tetratricopeptide repeat domain 23	BC038179|Ttc23|67009|tetratricopeptide repeat domain 23	AK005431|Ttc23|67009|tetratricopeptide repeat domain 23	AK084269|Ttc23|67009|tetratricopeptide repeat domain 23	AK166555|Ttc23|67009|tetratricopeptide repeat domain 23	AK166613|Ttc23|67009|tetratricopeptide repeat domain 23
mm9_v1_chr17_-_24844481_24844605	0.736518	AIRE.p2	AK193903|Tbl3|213773|transducin (beta)-like 3	AK210914|Tbl3|213773|transducin (beta)-like 3	AK210933|Tbl3|213773|transducin (beta)-like 3	BC019504|Tbl3|213773|transducin (beta)-like 3	AK137554|Tbl3|213773|transducin (beta)-like 3	AK028806|Tbl3|213773|transducin (beta)-like 3	AK163228|Tbl3|213773|transducin (beta)-like 3	AK165125|Tbl3|213773|transducin (beta)-like 3	AK167127|Tbl3|213773|transducin (beta)-like 3	AK081572|Tbl3|213773|transducin (beta)-like 3	AK149940|Tbl3|213773|transducin (beta)-like 3	AK083399|Tbl3|213773|transducin (beta)-like 3	AK081966|Tbl3|213773|transducin (beta)-like 3	NM_145396|Tbl3|213773|transducin (beta)-like 3
mm9_v1_chr16_-_14159346_14159388	0.725957	AIRE.p2	AK158881|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene	NM_001081154|4921513D23Rik|223989|RIKEN cDNA 4921513D23 gene
mm9_v1_chr9_-_86358490_86358538	0.724235	AIRE.p2	BC115687|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	BC115686|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK049229|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	NM_027394|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK011446|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein
mm9_v1_chr9_-_107673316_107673317	0.72169	AIRE.p2	AK161794|Rbm5|83486|RNA binding motif protein 5	BC054820|Rbm5|83486|RNA binding motif protein 5	BC031899|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr6_+_51494591_51494699	0.720598	AIRE.p2	AK152004|Snx10|71982|sorting nexin 10
mm9_v1_chr10_-_78560301_78560348	0.716239	AIRE.p2	BC082302|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	AK148309|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	NM_001004362|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene
mm9_v1_chr7_-_109713935_109713982	0.715487	AIRE.p2	BC010580|Trim21|20821|tripartite motif-containing 21	L27990|Trim21|20821|tripartite motif-containing 21	AK150484|Trim21|20821|tripartite motif-containing 21	AK171489|Trim21|20821|tripartite motif-containing 21	AK152619|Trim21|20821|tripartite motif-containing 21	AK141294|Trim21|20821|tripartite motif-containing 21	NM_001082552|Trim21|20821|tripartite motif-containing 21	NM_009277|Trim21|20821|tripartite motif-containing 21
mm9_v1_chr15_+_36103785_36103843	0.708176	AIRE.p2	AK003023|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK018914|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008136|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008287|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	BC028543|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	S63758|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K
mm9_v1_chr4_+_41296028_41296100	0.707779	AIRE.p2	NM_023305|Ubap1|67123|ubiquitin-associated protein 1	AK009596|Ubap1|67123|ubiquitin-associated protein 1	AK076078|Ubap1|67123|ubiquitin-associated protein 1	AK028477|Ubap1|67123|ubiquitin-associated protein 1	AK163229|Ubap1|67123|ubiquitin-associated protein 1	AK033121|Ubap1|67123|ubiquitin-associated protein 1	AK028670|Ubap1|67123|ubiquitin-associated protein 1	BC065996|Ubap1|67123|ubiquitin-associated protein 1	AF275549|Ubap1|67123|ubiquitin-associated protein 1	AK030370|Ubap1|67123|ubiquitin-associated protein 1
mm9_v1_chr1_-_53353810_53353878	0.706893	AIRE.p2	AK045010|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	BC028939|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	NM_153556|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	AK140689|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)
mm9_v1_chr6_+_71781292_71781391	0.70367	AIRE.p2	AK038129|Immt|76614|inner membrane protein, mitochondrial	NM_029673|Immt|76614|inner membrane protein, mitochondrial	AK146640|Immt|76614|inner membrane protein, mitochondrial	AK159909|Immt|76614|inner membrane protein, mitochondrial	AK049189|Immt|76614|inner membrane protein, mitochondrial	AK152588|Immt|76614|inner membrane protein, mitochondrial	AK030841|Immt|76614|inner membrane protein, mitochondrial	AK157805|Immt|76614|inner membrane protein, mitochondrial
mm9_v1_chr9_-_15105965_15105999	0.698134	AIRE.p2	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr11_-_101321789_101321881	0.697158	AIRE.p2	AK216339|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr3_+_95462640_95462703	0.693428	AIRE.p2	NM_008562|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr3_+_82859489_82859512	0.692926	AIRE.p2	BC006750|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	BC052895|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr1_+_129101551_129101562	0.691155	AIRE.p2	NM_145128|Mgat5|107895|mannoside acetylglucosaminyltransferase 5
mm9_v1_chr10_-_62064997_62065070	0.685035	AIRE.p2	BC060220|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AK012125|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	BC043655|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	BC059237|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AF159131|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AK160095|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	AK145578|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	NM_019553|Ddx21|56200|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
mm9_v1_chr6_+_57652594_57652646	0.680269	AIRE.p2	BC016072|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2	AB035967|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2
mm9_v1_chr3_+_132772586_132772695	0.676034	AIRE.p2	AK015941|Ints12|71793|integrator complex subunit 12
mm9_v1_chr13_+_113450958_113450993	0.673801	AIRE.p2	AK020109|Slc38a9|268706|solute carrier family 38, member 9	BC052361|Slc38a9|268706|solute carrier family 38, member 9	NM_178746|Slc38a9|268706|solute carrier family 38, member 9	AK044735|Slc38a9|268706|solute carrier family 38, member 9	AK043402|Slc38a9|268706|solute carrier family 38, member 9	AK034958|Slc38a9|268706|solute carrier family 38, member 9	AK039821|Slc38a9|268706|solute carrier family 38, member 9
mm9_v1_chrX_-_102265380_102265463	0.671027	AIRE.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr6_-_92431385_92431385	0.670325	AIRE.p2	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr9_+_72122705_72122721	0.669875	AIRE.p2	NM_146224|Zfp280d|235469|zinc finger protein 280D	AK169622|Zfp280d|235469|zinc finger protein 280D	AK172652|Zfp280d|235469|zinc finger protein 280D	AK083266|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr5_+_88983413_88983556	0.669165	AIRE.p2	BC003213|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AK010316|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AK145637|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	BC016581|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	BC022994|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AF155362|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	AF271213|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)	NM_023054|Utp3|65961|UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)
mm9_v1_chr9_-_14849831_14849921	0.66505	AIRE.p2	BC020413|Panx1|55991|pannexin 1	AK089764|Panx1|55991|pannexin 1	AK014033|Panx1|55991|pannexin 1	AK156194|Panx1|55991|pannexin 1	AK053871|Panx1|55991|pannexin 1	BC049074|Panx1|55991|pannexin 1	EU446265|Panx1|55991|pannexin 1	NM_019482|Panx1|55991|pannexin 1
mm9_v1_chr1_-_130256055_130256293	0.663253	AIRE.p2	AK188642|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK177954|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK180079|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK183692|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK194535|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK210474|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK211618|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK150726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146896|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC051658|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC057584|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK145520|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146770|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146272|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK088493|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	D86726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	NM_008567|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC050886|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
mm9_v1_chr10_-_53349752_53349783	0.660181	AIRE.p2	AK139112|Mcm9|71567|minichromosome maintenance complex component 9	AK046636|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr7_-_87516011_87516144	0.659096	AIRE.p2	AK044028|Man2a2|140481|mannosidase 2, alpha 2	NM_172903|Man2a2|140481|mannosidase 2, alpha 2	AK029913|Man2a2|140481|mannosidase 2, alpha 2
mm9_v1_chrX_-_71598873_71598966	0.657914	AIRE.p2	AK134624|Lage3|66192|L antigen family, member 3	BC027305|Lage3|66192|L antigen family, member 3	AK004210|Lage3|66192|L antigen family, member 3	AK002539|Lage3|66192|L antigen family, member 3	NM_025410|Lage3|66192|L antigen family, member 3
mm9_v1_chr7_-_31016726_31016816	0.656953	AIRE.p2	BC010684|Tbcb|66411|tubulin folding cofactor B	AK002316|Tbcb|66411|tubulin folding cofactor B	AK003655|Tbcb|66411|tubulin folding cofactor B	AK010438|Tbcb|66411|tubulin folding cofactor B
mm9_v1_chr8_-_90886051_90886133	0.656098	AIRE.p2	AF084259|Brd7|26992|bromodomain containing 7	AK142758|Brd7|26992|bromodomain containing 7	NM_012047|Brd7|26992|bromodomain containing 7	AK138934|Brd7|26992|bromodomain containing 7
mm9_v1_chr7_+_109371529_109371618	0.645103	AIRE.p2	AK159933|Pgap2|233575|post-GPI attachment to proteins 2	AK159950|Pgap2|233575|post-GPI attachment to proteins 2	AK136764|Pgap2|233575|post-GPI attachment to proteins 2	AK146442|Pgap2|233575|post-GPI attachment to proteins 2	BC004794|Pgap2|233575|post-GPI attachment to proteins 2	NM_145583|Pgap2|233575|post-GPI attachment to proteins 2	AK152931|Pgap2|233575|post-GPI attachment to proteins 2
mm9_v1_chr4_-_11181335_11181349	0.644973	AIRE.p2	BC049092|Ints8|72656|integrator complex subunit 8	BC057618|Ints8|72656|integrator complex subunit 8
mm9_v1_chr2_+_51893618_51893676	0.642551	AIRE.p2	AK139985|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	NM_009398|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	U83903|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	BC021155|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6
mm9_v1_chr16_-_11137100_11137212	0.6416	AIRE.p2	AK218593|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr8_-_3154851_3154868	0.639611	AIRE.p2	AK085344|Insr|16337|insulin receptor
mm9_v1_chr17_-_35299913_35299918	0.634991	AIRE.p2	AK220526|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr3_+_94926272_94926508	0.632389	AIRE.p2	
mm9_v1_chr15_-_82624668_82624681	0.631613	AIRE.p2	AK004915|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26	NM_029562|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr6_+_136467315_136467378	0.631359	AIRE.p2	AK082697|Atf7ip|54343|activating transcription factor 7 interacting protein	AK167542|Atf7ip|54343|activating transcription factor 7 interacting protein	BC048827|Atf7ip|54343|activating transcription factor 7 interacting protein	AK134252|Atf7ip|54343|activating transcription factor 7 interacting protein	BC052460|Atf7ip|54343|activating transcription factor 7 interacting protein	NM_019426|Atf7ip|54343|activating transcription factor 7 interacting protein	AJ132702|Atf7ip|54343|activating transcription factor 7 interacting protein	BC022714|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr2_-_50152180_50152256	0.628008	AIRE.p2	BC002253|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	NM_133839|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm9_v1_chr2_+_84877428_84877456	0.627189	AIRE.p2	BC042502|Ssrp1|20833|structure specific recognition protein 1
mm9_v1_chr8_+_86239094_86239097	0.627147	AIRE.p2	NM_197982|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr9_-_107673318_107673340	0.62307	AIRE.p2	AK134183|Rbm5|83486|RNA binding motif protein 5	AK146880|Rbm5|83486|RNA binding motif protein 5	NM_148930|Rbm5|83486|RNA binding motif protein 5
mm9_v1_chr2_-_113688771_113688881	0.620088	AIRE.p2	BC050875|Arhgap11a|228482|Rho GTPase activating protein 11A	AK129034|Arhgap11a|228482|Rho GTPase activating protein 11A	BC058105|Arhgap11a|228482|Rho GTPase activating protein 11A	NM_181416|Arhgap11a|228482|Rho GTPase activating protein 11A	AK162074|Arhgap11a|228482|Rho GTPase activating protein 11A
mm9_v1_chr6_+_134961654_134961711	0.619569	AIRE.p2	
mm9_v1_chr1_-_170085342_170085390	0.619469	AIRE.p2	AK083616|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr11_+_102110161_102110288	0.618544	AIRE.p2	NM_153544|BC030867|217216|cDNA sequence BC030867	AK029811|BC030867|217216|cDNA sequence BC030867	BC030867|BC030867|217216|cDNA sequence BC030867	BC108338|BC030867|217216|cDNA sequence BC030867	BC085317|BC030867|217216|cDNA sequence BC030867
mm9_v1_chr7_+_46773116_46773135	0.616533	AIRE.p2	BC080693|Zfp619|70227|zinc finger protein 619	NM_001004139|Zfp619|70227|zinc finger protein 619
mm9_v1_chr12_-_32398730_32398790	0.616027	AIRE.p2	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr15_-_103197178_103197295	0.614088	AIRE.p2	BC053431|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	NM_010577|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC050943|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC059829|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)
mm9_v1_chr3_+_95733186_95733221	0.612981	AIRE.p2	AK088401|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK012759|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK049647|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK159446|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	AK147888|Anp32e|66471|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm9_v1_chrX_+_156146532_156146595	0.612553	AIRE.p2	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr1_+_44204776_44204895	0.611603	AIRE.p2	BC060659|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC053034|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC092235|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC033413|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	D16306|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm9_v1_chr4_+_33397279_33397404	0.611451	AIRE.p2	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr10_+_97028456_97028463	0.606513	AIRE.p2	BC005550|Lum|17022|lumican	S79461|Lum|17022|lumican
mm9_v1_chr16_-_23520662_23520727	0.606418	AIRE.p2	BC131637|Masp1|17174|mannan-binding lectin serine peptidase 1	BC131638|Masp1|17174|mannan-binding lectin serine peptidase 1	NM_008555|Masp1|17174|mannan-binding lectin serine peptidase 1	AK032944|Masp1|17174|mannan-binding lectin serine peptidase 1	AB049755|Masp1|17174|mannan-binding lectin serine peptidase 1	D16492|Masp1|17174|mannan-binding lectin serine peptidase 1	AK043055|Masp1|17174|mannan-binding lectin serine peptidase 1	AK031598|Masp1|17174|mannan-binding lectin serine peptidase 1
mm9_v1_chr19_+_13439119_13439119	0.603473	AIRE.p2	NM_146691|Olfr1467|258686|olfactory receptor 1467
mm9_v1_chr6_+_51494521_51494550	0.601576	AIRE.p2	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr3_-_81779636_81779675	0.600626	AIRE.p2	U24493|Tdo2|56720|tryptophan 2,3-dioxygenase	BC018390|Tdo2|56720|tryptophan 2,3-dioxygenase	NM_019911|Tdo2|56720|tryptophan 2,3-dioxygenase	AK132271|Tdo2|56720|tryptophan 2,3-dioxygenase
mm9_v1_chr17_-_23923163_23923198	0.599974	AIRE.p2	BC024947|Flywch2|76917|FLYWCH family member 2
mm9_v1_chr16_-_32079420_32079468	0.59882	AIRE.p2	AK037275|Pak2|224105|p21 protein (Cdc42/Rac)-activated kinase 2
mm9_v1_chr5_-_118605391_118605453	0.595864	AIRE.p2	AK034447|Fbxw8|231672|F-box and WD-40 domain protein 8	AK047756|Fbxw8|231672|F-box and WD-40 domain protein 8	BC009095|Fbxw8|231672|F-box and WD-40 domain protein 8	AK047695|Fbxw8|231672|F-box and WD-40 domain protein 8
mm9_v1_chr19_+_11592938_11593140	0.592114	AIRE.p2	AF237909|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	NM_027209|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK172345|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	BC027425|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK075671|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK007613|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B
mm9_v1_chr17_-_25981402_25981452	0.590913	AIRE.p2	AK142183|Rhot2|214952|ras homolog gene family, member T2	BC029777|Rhot2|214952|ras homolog gene family, member T2	BC034062|Rhot2|214952|ras homolog gene family, member T2
mm9_v1_chr4_-_11181373_11181380	0.589266	AIRE.p2	AK169552|Ints8|72656|integrator complex subunit 8	AK049513|Ints8|72656|integrator complex subunit 8
mm9_v1_chr8_+_54597026_54597158	0.587366	AIRE.p2	NM_001005847|Aga|11593|aspartylglucosaminidase	BC132227|Aga|11593|aspartylglucosaminidase	BC132229|Aga|11593|aspartylglucosaminidase	BC145297|Aga|11593|aspartylglucosaminidase	S81393|Aga|11593|aspartylglucosaminidase	BC048230|Aga|11593|aspartylglucosaminidase
mm9_v1_chr10_-_84590718_84590771	0.586912	AIRE.p2	BC046619|Mterfd3|74238|MTERF domain containing 3	AK047778|Mterfd3|74238|MTERF domain containing 3	AK039816|Mterfd3|74238|MTERF domain containing 3	NM_028832|Mterfd3|74238|MTERF domain containing 3
mm9_v1_chr7_+_111367306_111367377	0.586432	AIRE.p2	AK040000|Trim6|94088|tripartite motif-containing 6	NM_001013616|Trim6|94088|tripartite motif-containing 6	AK021253|Trim6|94088|tripartite motif-containing 6	AK033396|Trim6|94088|tripartite motif-containing 6	AK049238|Trim6|94088|tripartite motif-containing 6	BC138965|Trim6|94088|tripartite motif-containing 6
mm9_v1_chrX_+_155970637_155970677	0.58431	AIRE.p2	BC075674|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	AK145159|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr10_-_53349799_53349820	0.584012	AIRE.p2	AK018494|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr14_-_66211842_66211926	0.583601	AIRE.p2	NM_028811|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK012072|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK150058|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	BC057453|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK088457|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)
mm9_v1_chr2_+_34262387_34262397	0.58255	AIRE.p2	BC096618|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr5_+_31357245_31357300	0.57693	AIRE.p2	BC137856|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144972|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144973|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr11_+_83755589_83755687	0.575843	AIRE.p2	NM_030096|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK141200|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK133545|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK080767|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK166789|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	AK019204|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	BC029094|Ddx52|78394|DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
mm9_v1_chr5_-_65726802_65726885	0.566819	AIRE.p2	U07157|Rfc1|19687|replication factor C (activator 1) 1	X72711|Rfc1|19687|replication factor C (activator 1) 1	BC085174|Rfc1|19687|replication factor C (activator 1) 1	U01222|Rfc1|19687|replication factor C (activator 1) 1	U36441|Rfc1|19687|replication factor C (activator 1) 1	BC085173|Rfc1|19687|replication factor C (activator 1) 1	AK136937|Rfc1|19687|replication factor C (activator 1) 1	AK132028|Rfc1|19687|replication factor C (activator 1) 1	AK146164|Rfc1|19687|replication factor C (activator 1) 1	AK146314|Rfc1|19687|replication factor C (activator 1) 1	NM_011258|Rfc1|19687|replication factor C (activator 1) 1	U15037|Rfc1|19687|replication factor C (activator 1) 1
mm9_v1_chr5_-_143665305_143665346	0.56663	AIRE.p2	AK151514|Actb|11461|actin, beta
mm9_v1_chr9_-_15084310_15084404	0.566377	AIRE.p2	BC020185|Med17|234959|mediator complex subunit 17	NM_144933|Med17|234959|mediator complex subunit 17	AK033151|Med17|234959|mediator complex subunit 17	AK142033|Med17|234959|mediator complex subunit 17	AK038451|Med17|234959|mediator complex subunit 17	AK049112|Med17|234959|mediator complex subunit 17	AK151377|Med17|234959|mediator complex subunit 17
mm9_v1_chr13_+_24706474_24706497	0.565002	AIRE.p2	AK041665|Fam65b|193385|family with sequence similarity 65, member B	NM_178658|Fam65b|193385|family with sequence similarity 65, member B	AK036452|Fam65b|193385|family with sequence similarity 65, member B	AK040887|Fam65b|193385|family with sequence similarity 65, member B
mm9_v1_chrX_-_45944937_45944938	0.56296	AIRE.p2	BC051397|Zfp280c|208968|zinc finger protein 280C	NM_001166650|Zfp280c|208968|zinc finger protein 280C	BC028839|Zfp280c|208968|zinc finger protein 280C
mm9_v1_chr9_+_75862772_75862821	0.562486	AIRE.p2	BC037381|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	NM_173731|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK141622|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	AK164164|Hmgcll1|208982|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm9_v1_chr16_-_62846777_62846879	0.558884	AIRE.p2	AK016794|Arl13b|68146|ADP-ribosylation factor-like 13B	AK020859|Arl13b|68146|ADP-ribosylation factor-like 13B	AK051159|Arl13b|68146|ADP-ribosylation factor-like 13B	AK021270|Arl13b|68146|ADP-ribosylation factor-like 13B	NM_026577|Arl13b|68146|ADP-ribosylation factor-like 13B
mm9_v1_chr17_-_41017500_41017509	0.555622	AIRE.p2	AK033670|9130008F23Rik|71583|RIKEN cDNA 9130008F23 gene	BC132063|9130008F23Rik|71583|RIKEN cDNA 9130008F23 gene	BC132065|9130008F23Rik|71583|RIKEN cDNA 9130008F23 gene	AK018601|9130008F23Rik|71583|RIKEN cDNA 9130008F23 gene	NM_027834|9130008F23Rik|71583|RIKEN cDNA 9130008F23 gene
mm9_v1_chr9_+_98197001_98197080	0.554393	AIRE.p2	BC005737|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	NM_144533|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK040783|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041526|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041897|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3
mm9_v1_chr4_-_19497166_19497254	0.553648	AIRE.p2	BC036983|Cpne3|70568|copine III	AK220348|Cpne3|70568|copine III	AK146324|Cpne3|70568|copine III	AK017357|Cpne3|70568|copine III	AK036664|Cpne3|70568|copine III	NM_027769|Cpne3|70568|copine III	AK017651|Cpne3|70568|copine III
mm9_v1_chr14_-_104243474_104243491	0.551693	AIRE.p2	AK082103|Ednrb|13618|endothelin receptor type B
mm9_v1_chr16_+_14163414_14163441	0.550557	AIRE.p2	AK012861|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK037289|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK012830|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK146982|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK169743|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)
mm9_v1_chr11_-_53083217_53083336	0.549759	AIRE.p2	AK180907|Hspa4|15525|heat shock protein 4	AK148883|Hspa4|15525|heat shock protein 4
mm9_v1_chr7_-_19751441_19751475	0.544189	AIRE.p2	AK050472|Gipr|381853|gastric inhibitory polypeptide receptor	AK146552|Gipr|381853|gastric inhibitory polypeptide receptor	NM_001080815|Gipr|381853|gastric inhibitory polypeptide receptor
mm9_v1_chr14_+_67852128_67852128	0.54048	AIRE.p2	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr12_+_74224693_74224793	0.539509	AIRE.p2	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr12_-_55796825_55796870	0.538434	AIRE.p2	NM_025456|Eapp|66266|E2F-associated phosphoprotein	BC037622|Eapp|66266|E2F-associated phosphoprotein	AK145027|Eapp|66266|E2F-associated phosphoprotein	AK145041|Eapp|66266|E2F-associated phosphoprotein
mm9_v1_chr5_-_105411580_105411736	0.53591	AIRE.p2	BC029095|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK037614|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AF324242|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK051880|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK156626|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138773|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138772|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	NM_030239|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK030831|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3
mm9_v1_chr17_+_36131397_36131470	0.533734	AIRE.p2	AK078380|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK020860|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK142942|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	BC055918|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene
mm9_v1_chr11_-_53520771_53520798	0.532555	AIRE.p2	BC058180|Rad50|19360|RAD50 homolog (S. cerevisiae)	U66887|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr10_+_101621712_101621712	0.531459	AIRE.p2	AK032009|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	NM_001162369|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm9_v1_chr16_+_43890014_43890036	0.529689	AIRE.p2	NM_027801|2610015P09Rik|212153|RIKEN cDNA 2610015P09 gene
mm9_v1_chr7_+_129210954_129210978	0.524738	AIRE.p2	AK011862|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr7_+_148127464_148127517	0.522326	AIRE.p2	AK085600|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)	AK077662|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)	NM_145387|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)	BC056953|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)
mm9_v1_chr10_+_80568647_80568919	0.518905	AIRE.p2	AK080574|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK172055|Map2k2|26396|mitogen-activated protein kinase kinase 2	NM_023138|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK171584|Map2k2|26396|mitogen-activated protein kinase kinase 2	BC014830|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK143425|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK138130|Map2k2|26396|mitogen-activated protein kinase kinase 2	S68267|Map2k2|26396|mitogen-activated protein kinase kinase 2
mm9_v1_chr6_+_15135505_15135508	0.517557	AIRE.p2	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr15_-_76701806_76701851	0.515403	AIRE.p2	AK153967|Zfp251|71591|zinc finger protein 251	AK047148|Zfp251|71591|zinc finger protein 251	AK140082|Zfp251|71591|zinc finger protein 251
mm9_v1_chr8_+_126755253_126755502	0.514616	AIRE.p2	NM_139272|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK046567|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	BC059818|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK149609|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK145122|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AF348968|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK151536|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm9_v1_chr11_-_50641191_50641232	0.51063	AIRE.p2	AK086760|Zfp354c|30944|zinc finger protein 354C	AK220194|Zfp354c|30944|zinc finger protein 354C	AK145882|Zfp354c|30944|zinc finger protein 354C	BC079908|Zfp354c|30944|zinc finger protein 354C	NM_013922|Zfp354c|30944|zinc finger protein 354C
mm9_v1_chrX_+_135744582_135744582	0.509491	AIRE.p2	NM_001164630|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_175541|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr19_-_38199737_38199810	0.506617	AIRE.p2	BC093529|Rbp4|19662|retinol binding protein 4, plasma	NM_001159487|Rbp4|19662|retinol binding protein 4, plasma
mm9_v1_chr5_-_116474254_116474473	0.50584	AIRE.p2	AK088250|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	BC016398|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	NM_031869|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit	AK153552|Prkab1|19079|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm9_v1_chr11_-_102046532_102046628	0.504213	AIRE.p2	AK081685|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK011126|Lsm12|268490|LSM12 homolog (S. cerevisiae)	BC027784|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK132889|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK075668|Lsm12|268490|LSM12 homolog (S. cerevisiae)	AK151118|Lsm12|268490|LSM12 homolog (S. cerevisiae)	NM_172947|Lsm12|268490|LSM12 homolog (S. cerevisiae)
mm9_v1_chr6_-_128309288_128309372	0.498164	AIRE.p2	
mm9_v1_chr12_-_82695968_82696003	0.497349	AIRE.p2	AK005232|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	AK089101|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)
mm9_v1_chr1_-_155334737_155334791	0.492014	AIRE.p2	U91922|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	BC064082|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	BC089159|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK141824|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK148423|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK169735|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	AK013423|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	BC033911|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9	NM_007842|Dhx9|13211|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm9_v1_chr6_+_96063137_96063148	0.490404	AIRE.p2	AK050001|Fam19a1|320265|family with sequence similarity 19, member A1	NM_182808|Fam19a1|320265|family with sequence similarity 19, member A1
mm9_v1_chr11_+_77796215_77796321	0.489405	AIRE.p2	AK170155|Phf12|268448|PHD finger protein 12	AK089226|Phf12|268448|PHD finger protein 12	AK010807|Phf12|268448|PHD finger protein 12	AK155354|Phf12|268448|PHD finger protein 12	AK053787|Phf12|268448|PHD finger protein 12	NM_174852|Phf12|268448|PHD finger protein 12
mm9_v1_chr7_+_109590208_109590457	0.486093	AIRE.p2	NM_009103|Rrm1|20133|ribonucleotide reductase M1	M14224|Rrm1|20133|ribonucleotide reductase M1	AK199985|Rrm1|20133|ribonucleotide reductase M1	AK082135|Rrm1|20133|ribonucleotide reductase M1	BC066217|Rrm1|20133|ribonucleotide reductase M1	BC003299|Rrm1|20133|ribonucleotide reductase M1	AK168586|Rrm1|20133|ribonucleotide reductase M1	AK088043|Rrm1|20133|ribonucleotide reductase M1	AK137075|Rrm1|20133|ribonucleotide reductase M1	BC016450|Rrm1|20133|ribonucleotide reductase M1	K02927|Rrm1|20133|ribonucleotide reductase M1
mm9_v1_chr12_+_99985150_99985255	0.479369	AIRE.p2	AK076066|Zc3h14|75553|zinc finger CCCH type containing 14	NM_001008506|Zc3h14|75553|zinc finger CCCH type containing 14	NM_001160107|Zc3h14|75553|zinc finger CCCH type containing 14	NM_029334|Zc3h14|75553|zinc finger CCCH type containing 14	AK160937|Zc3h14|75553|zinc finger CCCH type containing 14	AK050226|Zc3h14|75553|zinc finger CCCH type containing 14	BC024824|Zc3h14|75553|zinc finger CCCH type containing 14	AK048046|Zc3h14|75553|zinc finger CCCH type containing 14	BC034760|Zc3h14|75553|zinc finger CCCH type containing 14
mm9_v1_chr7_-_31435128_31435246	0.479309	AIRE.p2	AK151000|Rbm42|68035|RNA binding motif protein 42	BC011286|Rbm42|68035|RNA binding motif protein 42	BC027372|Rbm42|68035|RNA binding motif protein 42	BC057928|Rbm42|68035|RNA binding motif protein 42	BC039917|Rbm42|68035|RNA binding motif protein 42	AK013929|Rbm42|68035|RNA binding motif protein 42	BC009148|Rbm42|68035|RNA binding motif protein 42	NM_133693|Rbm42|68035|RNA binding motif protein 42
mm9_v1_chr6_-_71773747_71773805	0.474917	AIRE.p2	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chrX_+_90920450_90920749	0.472046	AIRE.p2	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr5_-_50450152_50450240	0.471898	AIRE.p2	AK028929|Gpr125|70693|G protein-coupled receptor 125	AK014455|Gpr125|70693|G protein-coupled receptor 125	BC052391|Gpr125|70693|G protein-coupled receptor 125	NM_133911|Gpr125|70693|G protein-coupled receptor 125
mm9_v1_chr17_+_21870690_21870690	0.470148	AIRE.p2	AK147958|Zfp229|381067|zinc finger protein	NM_001164676|Zfp229|381067|zinc finger protein
mm9_v1_chr9_+_77765170_77765271	0.469611	AIRE.p2	AK031743|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK162451|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	NM_134255|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK051580|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK045274|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085663|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK085696|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK028761|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK167755|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168360|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK088153|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	AK168987|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)	BC022911|Elovl5|68801|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm9_v1_chr13_-_21494549_21494625	0.462172	AIRE.p2	BC007473|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK031286|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK031080|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK050028|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK028902|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	NM_001145778|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	NM_023685|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3
mm9_v1_chr11_-_68821930_68821976	0.461746	AIRE.p2	AK139115|Pfas|237823|phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	NM_001159519|Pfas|237823|phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)
mm9_v1_chr14_+_62218348_62218392	0.461071	AIRE.p2	NM_023233|Trim13|66597|tripartite motif-containing 13	AK013959|Trim13|66597|tripartite motif-containing 13	AK017850|Trim13|66597|tripartite motif-containing 13
mm9_v1_chr18_-_35821788_35821845	0.459326	AIRE.p2	BC060950|Spata24|71242|spermatogenesis associated 24	AK017218|Spata24|71242|spermatogenesis associated 24	AK016341|Spata24|71242|spermatogenesis associated 24	AK012241|Spata24|71242|spermatogenesis associated 24	AY730532|Spata24|71242|spermatogenesis associated 24	NM_027733|Spata24|71242|spermatogenesis associated 24	NM_029485|Spata24|71242|spermatogenesis associated 24
mm9_v1_chr4_+_147413185_147413279	0.45861	AIRE.p2	AF404271|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	NM_010840|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AK030192|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AF404272|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr2_+_91386476_91386497	0.457937	AIRE.p2	BC017140|Ckap5|75786|cytoskeleton associated protein 5	BC089032|Ckap5|75786|cytoskeleton associated protein 5	NM_001165989|Ckap5|75786|cytoskeleton associated protein 5	NM_029437|Ckap5|75786|cytoskeleton associated protein 5	BC138334|Ckap5|75786|cytoskeleton associated protein 5	BC096422|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr17_+_88035318_88035321	0.457097	AIRE.p2	NM_008532|Epcam|17075|epithelial cell adhesion molecule
mm9_v1_chrX_+_155970593_155970627	0.45618	AIRE.p2	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr5_+_53132801_53132856	0.45406	AIRE.p2	NM_025951|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	NM_028744|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK035523|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK170730|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK016754|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AY148879|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK011751|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta
mm9_v1_chr3_-_115832278_115832299	0.453048	AIRE.p2	CT010373|Vcam1|22329|vascular cell adhesion molecule 1	X67783|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr19_+_46782153_46782204	0.451564	AIRE.p2	AK009814|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr15_+_83393975_83394050	0.4508	AIRE.p2	NM_009775|Tspo|12257|translocator protein	AK151824|Tspo|12257|translocator protein	AK153273|Tspo|12257|translocator protein	AK165822|Tspo|12257|translocator protein	AK166125|Tspo|12257|translocator protein	AK151569|Tspo|12257|translocator protein	AK156489|Tspo|12257|translocator protein	AK172384|Tspo|12257|translocator protein	AK149743|Tspo|12257|translocator protein	AK151421|Tspo|12257|translocator protein	AK152860|Tspo|12257|translocator protein	AK153159|Tspo|12257|translocator protein	AK165450|Tspo|12257|translocator protein	AK150516|Tspo|12257|translocator protein	AK152082|Tspo|12257|translocator protein	AK152827|Tspo|12257|translocator protein	BC002055|Tspo|12257|translocator protein	D21207|Tspo|12257|translocator protein
mm9_v1_chr3_-_52821116_52821157	0.450381	AIRE.p2	AB093286|Cog6|67542|component of oligomeric golgi complex 6	AK048986|Cog6|67542|component of oligomeric golgi complex 6	AK153320|Cog6|67542|component of oligomeric golgi complex 6	AK031149|Cog6|67542|component of oligomeric golgi complex 6	AK045223|Cog6|67542|component of oligomeric golgi complex 6	NM_026225|Cog6|67542|component of oligomeric golgi complex 6	AK016663|Cog6|67542|component of oligomeric golgi complex 6
mm9_v1_chr9_+_3532302_3532353	0.450305	AIRE.p2	NM_001033322|Gucy1a2|234889|guanylate cyclase 1, soluble, alpha 2
mm9_v1_chr14_+_70945119_70945160	0.44927	AIRE.p2	AK012301|Reep4|72549|receptor accessory protein 4
mm9_v1_chr18_+_32227377_32227461	0.448957	AIRE.p2	NM_173441|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK033013|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK041691|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK028247|Iws1|73473|IWS1 homolog (S. cerevisiae)	AK163972|Iws1|73473|IWS1 homolog (S. cerevisiae)	BC068184|Iws1|73473|IWS1 homolog (S. cerevisiae)
mm9_v1_chr2_-_155999858_155999931	0.448712	AIRE.p2	BC082607|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr3_+_28704426_28704449	0.446839	AIRE.p2	AK170359|Rpl22l1|68028|ribosomal protein L22 like 1	AK008915|Rpl22l1|68028|ribosomal protein L22 like 1	AK013966|Rpl22l1|68028|ribosomal protein L22 like 1	NM_026517|Rpl22l1|68028|ribosomal protein L22 like 1	AK010265|Rpl22l1|68028|ribosomal protein L22 like 1	BC026533|Rpl22l1|68028|ribosomal protein L22 like 1
mm9_v1_chr11_+_95275392_95275501	0.446831	AIRE.p2	NM_025287|Spop|20747|speckle-type POZ protein	AK168546|Spop|20747|speckle-type POZ protein	AK030746|Spop|20747|speckle-type POZ protein	AK132383|Spop|20747|speckle-type POZ protein	BC045205|Spop|20747|speckle-type POZ protein	AK004669|Spop|20747|speckle-type POZ protein	AK159482|Spop|20747|speckle-type POZ protein	AK028201|Spop|20747|speckle-type POZ protein	BC064809|Spop|20747|speckle-type POZ protein	AK168185|Spop|20747|speckle-type POZ protein	AK166581|Spop|20747|speckle-type POZ protein	AK160858|Spop|20747|speckle-type POZ protein
mm9_v1_chr12_-_99816091_99816149	0.441918	AIRE.p2	BC132487|Kcnk10|72258|potassium channel, subfamily K, member 10	BC137869|Kcnk10|72258|potassium channel, subfamily K, member 10	AK082153|Kcnk10|72258|potassium channel, subfamily K, member 10	NM_029911|Kcnk10|72258|potassium channel, subfamily K, member 10
mm9_v1_chr8_-_47209499_47209499	0.440229	AIRE.p2	NM_207213|Snx25|102141|sorting nexin 25
mm9_v1_chr16_+_20141134_20141212	0.438504	AIRE.p2	NM_001033237|Yeats2|208146|YEATS domain containing 2	NM_001145930|Yeats2|208146|YEATS domain containing 2	NM_001145931|Yeats2|208146|YEATS domain containing 2	AK165933|Yeats2|208146|YEATS domain containing 2	AK160791|Yeats2|208146|YEATS domain containing 2
mm9_v1_chrX_-_34404128_34404240	0.437579	AIRE.p2	BC085302|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	BC051144|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK032304|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK036910|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK084447|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK044209|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK034943|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK141615|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK035825|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	AK021190|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene	NM_029951|C330007P06Rik|77644|RIKEN cDNA C330007P06 gene
mm9_v1_chr10_+_127691166_127691233	0.437449	AIRE.p2	NM_133996|Apon|28194|apolipoprotein N	AK083289|Apon|28194|apolipoprotein N
mm9_v1_chr15_+_8119063_8119105	0.436483	AIRE.p2	AK028897|2410089E03Rik|73692|RIKEN cDNA 2410089E03 gene	NM_001162906|2410089E03Rik|73692|RIKEN cDNA 2410089E03 gene
mm9_v1_chr2_-_180436533_180436806	0.43504	AIRE.p2	BC029110|Dido1|23856|death inducer-obliterator 1	AJ238332|Dido1|23856|death inducer-obliterator 1	AY425951|Dido1|23856|death inducer-obliterator 1	AY425952|Dido1|23856|death inducer-obliterator 1	AK044919|Dido1|23856|death inducer-obliterator 1	AK083334|Dido1|23856|death inducer-obliterator 1	AK042474|Dido1|23856|death inducer-obliterator 1	NM_011805|Dido1|23856|death inducer-obliterator 1	NM_175551|Dido1|23856|death inducer-obliterator 1	AK014422|Dido1|23856|death inducer-obliterator 1
mm9_v1_chr9_+_46081146_46081375	0.431387	AIRE.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr5_+_135582754_135582797	0.431036	AIRE.p2	AK143999|Mlxipl|58805|MLX interacting protein-like	AK143800|Mlxipl|58805|MLX interacting protein-like	AF245475|Mlxipl|58805|MLX interacting protein-like	AF245476|Mlxipl|58805|MLX interacting protein-like	AF245477|Mlxipl|58805|MLX interacting protein-like	AF245478|Mlxipl|58805|MLX interacting protein-like	AF245479|Mlxipl|58805|MLX interacting protein-like	NM_021455|Mlxipl|58805|MLX interacting protein-like	AF156604|Mlxipl|58805|MLX interacting protein-like	BC064053|Mlxipl|58805|MLX interacting protein-like
mm9_v1_chr18_-_62915799_62916000	0.430801	AIRE.p2	BC072581|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK012381|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK020725|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene
mm9_v1_chr10_-_62255007_62255115	0.430624	AIRE.p2	BC034174|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC051052|Ccar1|67500|cell division cycle and apoptosis regulator 1	NM_026201|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr13_-_38085986_38086062	0.426619	AIRE.p2	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr18_+_31948788_31948829	0.42579	AIRE.p2	AK011600|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	NM_027002|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	AK009093|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	BC004810|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	NM_027101|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D
mm9_v1_chr11_-_48927255_48927258	0.423876	AIRE.p2	BC110470|Olfr1396|258334|olfactory receptor 1396	BC110471|Olfr1396|258334|olfactory receptor 1396	NM_146337|Olfr1396|258334|olfactory receptor 1396
mm9_v1_chr2_-_29904342_29904416	0.418547	AIRE.p2	BC085113|Wdr34|71820|WD repeat domain 34	AK014304|Wdr34|71820|WD repeat domain 34	NM_001008498|Wdr34|71820|WD repeat domain 34
mm9_v1_chrX_-_91368713_91368747	0.417135	AIRE.p2	L19714|Zfx|22764|zinc finger protein X-linked	AK145115|Zfx|22764|zinc finger protein X-linked	NM_001044386|Zfx|22764|zinc finger protein X-linked	NM_011768|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr6_-_88396477_88396541	0.416806	AIRE.p2	AF268871|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AF283518|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	BC099675|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK147924|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	BC024915|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK171885|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK028424|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK087501|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	NM_023060|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm9_v1_chr9_-_96378951_96379045	0.416199	AIRE.p2	AK007588|Rnf7|19823|ring finger protein 7	BC011127|Rnf7|19823|ring finger protein 7	AK002628|Rnf7|19823|ring finger protein 7	AK003248|Rnf7|19823|ring finger protein 7	AK003963|Rnf7|19823|ring finger protein 7	AK011328|Rnf7|19823|ring finger protein 7	AK146030|Rnf7|19823|ring finger protein 7	NM_011279|Rnf7|19823|ring finger protein 7	AF092877|Rnf7|19823|ring finger protein 7
mm9_v1_chr2_+_109532592_109532697	0.414456	AIRE.p2	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr2_+_109857966_109858261	0.413567	AIRE.p2	AK147056|Ccdc34|68201|coiled-coil domain containing 34	NM_026613|Ccdc34|68201|coiled-coil domain containing 34	BC108339|Ccdc34|68201|coiled-coil domain containing 34	AK019172|Ccdc34|68201|coiled-coil domain containing 34	AK033555|Ccdc34|68201|coiled-coil domain containing 34	AK019247|Ccdc34|68201|coiled-coil domain containing 34	AK012383|Ccdc34|68201|coiled-coil domain containing 34	BC062248|Ccdc34|68201|coiled-coil domain containing 34	AK014021|Ccdc34|68201|coiled-coil domain containing 34	BC089458|Ccdc34|68201|coiled-coil domain containing 34	BC049229|Ccdc34|68201|coiled-coil domain containing 34
mm9_v1_chr14_-_66627993_66628046	0.410848	AIRE.p2	BC019856|Gulo|268756|gulonolactone (L-) oxidase	BC028822|Gulo|268756|gulonolactone (L-) oxidase	BC028828|Gulo|268756|gulonolactone (L-) oxidase	AK167460|Gulo|268756|gulonolactone (L-) oxidase	AK077740|Gulo|268756|gulonolactone (L-) oxidase	NM_178747|Gulo|268756|gulonolactone (L-) oxidase
mm9_v1_chr8_-_28239077_28239111	0.408703	AIRE.p2	BC098232|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	BC021918|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK151198|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK012459|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK012680|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK028228|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK083122|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	NM_025686|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK017767|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
mm9_v1_chr9_-_53475519_53475552	0.407846	AIRE.p2	BC075710|Cul5|75717|cullin 5
mm9_v1_chr13_-_54570167_54570211	0.407826	AIRE.p2	BC019603|Thoc3|73666|THO complex 3	AK010668|Thoc3|73666|THO complex 3	NM_028597|Thoc3|73666|THO complex 3
mm9_v1_chr17_-_56256668_56256720	0.407272	AIRE.p2	AY919875|Plin5|66968|perilipin 5	NM_001077348|Plin5|66968|perilipin 5
mm9_v1_chr13_-_22133203_22133232	0.407222	AIRE.p2	BC052219|Hist1h4i|319158|histone cluster 1, H4i	BC125598|Hist1h4i|319158|histone cluster 1, H4i	BC125600|Hist1h4i|319158|histone cluster 1, H4i	BC019757|Hist1h4i|319158|histone cluster 1, H4i	BC092144|Hist1h4i|319158|histone cluster 1, H4i	NM_175656|Hist1h4i|319158|histone cluster 1, H4i	AK011560|Hist1h4i|319158|histone cluster 1, H4i
mm9_v1_chr2_-_30033944_30034014	0.404343	AIRE.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr17_-_86544514_86544514	0.402449	AIRE.p2	AK021298|Srbd1|78586|S1 RNA binding domain 1	NM_030133|Srbd1|78586|S1 RNA binding domain 1
mm9_v1_chr2_-_128513089_128513155	0.400865	AIRE.p2	BC057201|Anapc1|17222|anaphase promoting complex subunit 1	AK149762|Anapc1|17222|anaphase promoting complex subunit 1	AK052404|Anapc1|17222|anaphase promoting complex subunit 1	AK053383|Anapc1|17222|anaphase promoting complex subunit 1	AK090134|Anapc1|17222|anaphase promoting complex subunit 1	AK054305|Anapc1|17222|anaphase promoting complex subunit 1	BC139002|Anapc1|17222|anaphase promoting complex subunit 1	BC145492|Anapc1|17222|anaphase promoting complex subunit 1	AK164804|Anapc1|17222|anaphase promoting complex subunit 1	X80169|Anapc1|17222|anaphase promoting complex subunit 1	AK077847|Anapc1|17222|anaphase promoting complex subunit 1	NM_008569|Anapc1|17222|anaphase promoting complex subunit 1
mm9_v1_chrX_+_156278399_156278494	0.3982	AIRE.p2	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr7_-_71518926_71518980	0.397271	AIRE.p2	BC116270|Fan1|330554|FANCD2/FANCI-associated nuclease 1	BC116271|Fan1|330554|FANCD2/FANCI-associated nuclease 1	AK077918|Fan1|330554|FANCD2/FANCI-associated nuclease 1	NM_177893|Fan1|330554|FANCD2/FANCI-associated nuclease 1
mm9_v1_chr11_+_86940545_86940631	0.395813	AIRE.p2	AK140822|Trim37|68729|tripartite motif-containing 37	BC058678|Trim37|68729|tripartite motif-containing 37	NM_197987|Trim37|68729|tripartite motif-containing 37	BC078416|Trim37|68729|tripartite motif-containing 37	BC059070|Trim37|68729|tripartite motif-containing 37
mm9_v1_chr19_+_5740903_5740936	0.393627	AIRE.p2	AK080869|Ltbp3|16998|latent transforming growth factor beta binding protein 3	NM_008520|Ltbp3|16998|latent transforming growth factor beta binding protein 3
mm9_v1_chr15_+_102289600_102289666	0.391857	AIRE.p2	NM_001170911|Prr13|66151|proline rich 13	NM_025385|Prr13|66151|proline rich 13	AK003850|Prr13|66151|proline rich 13	AK002430|Prr13|66151|proline rich 13	AK008894|Prr13|66151|proline rich 13	AK154583|Prr13|66151|proline rich 13	BC016234|Prr13|66151|proline rich 13	AK181585|Prr13|66151|proline rich 13
mm9_v1_chr8_+_73053432_73053453	0.390652	AIRE.p2	AB154247|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr18_-_78006491_78006518	0.387223	AIRE.p2	AK076912|Haus1|225745|HAUS augmin-like complex, subunit 1	AK146923|Haus1|225745|HAUS augmin-like complex, subunit 1	BC024400|Haus1|225745|HAUS augmin-like complex, subunit 1	NM_146089|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr15_+_101914622_101914760	0.38638	AIRE.p2	AK207103|Eif4b|75705|eukaryotic translation initiation factor 4B	AK180065|Eif4b|75705|eukaryotic translation initiation factor 4B	AK186733|Eif4b|75705|eukaryotic translation initiation factor 4B	AK192567|Eif4b|75705|eukaryotic translation initiation factor 4B	AK210570|Eif4b|75705|eukaryotic translation initiation factor 4B	AK212755|Eif4b|75705|eukaryotic translation initiation factor 4B	AK212975|Eif4b|75705|eukaryotic translation initiation factor 4B	AK213592|Eif4b|75705|eukaryotic translation initiation factor 4B	AK218019|Eif4b|75705|eukaryotic translation initiation factor 4B	AK214822|Eif4b|75705|eukaryotic translation initiation factor 4B	AK203780|Eif4b|75705|eukaryotic translation initiation factor 4B	AK195122|Eif4b|75705|eukaryotic translation initiation factor 4B	AK205492|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr16_+_16870983_16871175	0.382604	AIRE.p2	BC031723|Top3b|21976|topoisomerase (DNA) III beta	NM_011624|Top3b|21976|topoisomerase (DNA) III beta	AK079765|Top3b|21976|topoisomerase (DNA) III beta
mm9_v1_chrX_+_34335642_34335646	0.382423	AIRE.p2	U27316|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK003467|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	NM_007451|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr10_+_79620689_79620701	0.381951	AIRE.p2	AK013865|Midn|59090|midnolin
mm9_v1_chr4_+_24825226_24825304	0.377881	AIRE.p2	NM_026742|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK160341|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK034728|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK019042|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	BC028764|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK003553|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
mm9_v1_chr2_+_181336020_181336108	0.376445	AIRE.p2	AK145461|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	NM_133701|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK166890|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC025030|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK011639|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK081998|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC014869|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC023691|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)
mm9_v1_chr5_-_123632567_123632737	0.375389	AIRE.p2	X59530|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	NM_008277|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	BC013343|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	AK149416|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	D29987|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase
mm9_v1_chr1_+_65357830_65357830	0.372845	AIRE.p2	AK045576|Pth2r|213527|parathyroid hormone 2 receptor	NM_139270|Pth2r|213527|parathyroid hormone 2 receptor
mm9_v1_chr9_+_50583388_50583453	0.372093	AIRE.p2	AK086674|Alg9|102580|asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)	AK050335|Alg9|102580|asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)	AK149592|Alg9|102580|asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)	AK054293|Alg9|102580|asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)	BC021791|Alg9|102580|asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)	NM_133981|Alg9|102580|asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)
mm9_v1_chr16_-_16829386_16829548	0.371473	AIRE.p2	AF173866|Spag6|50525|sperm associated antigen 6	BC090660|Spag6|50525|sperm associated antigen 6	AK053966|Spag6|50525|sperm associated antigen 6	AK005732|Spag6|50525|sperm associated antigen 6	BC100455|Spag6|50525|sperm associated antigen 6	AK054199|Spag6|50525|sperm associated antigen 6	NM_015773|Spag6|50525|sperm associated antigen 6	AK164680|Spag6|50525|sperm associated antigen 6
mm9_v1_chr14_-_51405130_51405204	0.371468	AIRE.p2	BC003272|Ttc5|219022|tetratricopeptide repeat domain 5	BC025610|Ttc5|219022|tetratricopeptide repeat domain 5	AK077874|Ttc5|219022|tetratricopeptide repeat domain 5	BC092074|Ttc5|219022|tetratricopeptide repeat domain 5	AK081214|Ttc5|219022|tetratricopeptide repeat domain 5	AK161279|Ttc5|219022|tetratricopeptide repeat domain 5	AK157777|Ttc5|219022|tetratricopeptide repeat domain 5	AK133953|Ttc5|219022|tetratricopeptide repeat domain 5	BC069946|Ttc5|219022|tetratricopeptide repeat domain 5	AK044781|Ttc5|219022|tetratricopeptide repeat domain 5	NM_001080949|Ttc5|219022|tetratricopeptide repeat domain 5	NM_177625|Ttc5|219022|tetratricopeptide repeat domain 5
mm9_v1_chr7_+_142843598_142843624	0.370955	AIRE.p2	U36758|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK154910|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK160947|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr6_+_140572000_140572034	0.36866	AIRE.p2	BC025467|Aebp2|11569|AE binding protein 2
mm9_v1_chr13_+_67880629_67880739	0.366747	AIRE.p2	NM_028402|Zfp493|72958|zinc finger protein 493	AK013687|Zfp493|72958|zinc finger protein 493	AK140336|Zfp493|72958|zinc finger protein 493
mm9_v1_chrX_-_45866446_45866665	0.36662	AIRE.p2	AK211196|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	AF100927|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	AK133764|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	BC003292|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	DQ016499|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	NM_012019|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1
mm9_v1_chrX_+_130442964_130443234	0.364929	AIRE.p2	NM_001083895|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	NM_026838|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	AK136935|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	BC028307|Srpx2|68792|sushi-repeat-containing protein, X-linked 2
mm9_v1_chr6_-_30340952_30341009	0.363303	AIRE.p2	BC037445|Zc3hc1|232679|zinc finger, C3HC type 1	AJ537495|Zc3hc1|232679|zinc finger, C3HC type 1	AK151694|Zc3hc1|232679|zinc finger, C3HC type 1	BC050141|Zc3hc1|232679|zinc finger, C3HC type 1	AK088527|Zc3hc1|232679|zinc finger, C3HC type 1	AK167465|Zc3hc1|232679|zinc finger, C3HC type 1	NM_172735|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr4_-_118954780_118955048	0.360251	AIRE.p2	AK213887|Ybx1|22608|Y box protein 1	AK208509|Ybx1|22608|Y box protein 1	AK212502|Ybx1|22608|Y box protein 1
mm9_v1_chr1_+_88024759_88024856	0.359223	AIRE.p2	BC002203|Psmd1|70247|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
mm9_v1_chr11_-_65981945_65982052	0.357758	AIRE.p2	AK082443|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK030981|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK044263|Dnahc9|237806|dynein, axonemal, heavy chain 9	NM_001099633|Dnahc9|237806|dynein, axonemal, heavy chain 9
mm9_v1_chr9_+_47970096_47970197	0.357564	AIRE.p2	AK021362|Fam55d|244853|family with sequence similarity 55, member D	AK048132|Fam55d|244853|family with sequence similarity 55, member D	BC094249|Fam55d|244853|family with sequence similarity 55, member D	NM_172921|Fam55d|244853|family with sequence similarity 55, member D
mm9_v1_chr12_+_70397723_70397748	0.357447	AIRE.p2	AK051418|Klhdc2|69554|kelch domain containing 2	BC005581|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr14_-_20642973_20643066	0.355882	AIRE.p2	AK162433|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK148686|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK162070|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160555|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012451|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC023932|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC096571|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012460|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK003732|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	BC048357|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK012486|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	NM_026528|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene	AK160696|2700060E02Rik|68045|RIKEN cDNA 2700060E02 gene
mm9_v1_chr12_-_81213930_81214002	0.355248	AIRE.p2	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr9_-_53475610_53475616	0.353859	AIRE.p2	AK031955|Cul5|75717|cullin 5	NM_001161618|Cul5|75717|cullin 5	NM_027807|Cul5|75717|cullin 5
mm9_v1_chr19_-_41970627_41970698	0.35322	AIRE.p2	BC062977|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)	NM_199447|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)	AK146550|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)	BC056232|Rrp12|107094|ribosomal RNA processing 12 homolog (S. cerevisiae)
mm9_v1_chr1_+_44204752_44204764	0.352873	AIRE.p2	AK140825|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	AK137563|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	BC141070|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5	AK038822|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm9_v1_chr13_+_49063750_49063790	0.35284	AIRE.p2	AK014080|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene	AK021143|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene
mm9_v1_chr13_+_38129095_38129163	0.352464	AIRE.p2	AK152707|Riok1|71340|RIO kinase 1 (yeast)	BC006884|Riok1|71340|RIO kinase 1 (yeast)	AK017312|Riok1|71340|RIO kinase 1 (yeast)	NM_024242|Riok1|71340|RIO kinase 1 (yeast)
mm9_v1_chr15_-_96861590_96861647	0.349851	AIRE.p2	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr1_+_69873535_69873574	0.348824	AIRE.p2	AK015884|Spag16|66722|sperm associated antigen 16	BC120668|Spag16|66722|sperm associated antigen 16	BC145006|Spag16|66722|sperm associated antigen 16	AF490391|Spag16|66722|sperm associated antigen 16	NM_029160|Spag16|66722|sperm associated antigen 16	AK083083|Spag16|66722|sperm associated antigen 16
mm9_v1_chr9_+_107483603_107483637	0.348403	AIRE.p2	BC018457|Hyal3|109685|hyaluronoglucosaminidase 3	NM_178020|Hyal3|109685|hyaluronoglucosaminidase 3	AY048681|Hyal3|109685|hyaluronoglucosaminidase 3
mm9_v1_chr5_-_110698874_110698881	0.348222	AIRE.p2	AK049246|Pgam5|72542|phosphoglycerate mutase family member 5	AK169643|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chrX_-_9046362_9046456	0.347674	AIRE.p2	U43384|Cybb|13058|cytochrome b-245, beta polypeptide	AK033570|Cybb|13058|cytochrome b-245, beta polypeptide	AK053920|Cybb|13058|cytochrome b-245, beta polypeptide	AK079926|Cybb|13058|cytochrome b-245, beta polypeptide	BC071229|Cybb|13058|cytochrome b-245, beta polypeptide	BC042838|Cybb|13058|cytochrome b-245, beta polypeptide	AK152257|Cybb|13058|cytochrome b-245, beta polypeptide	AK153154|Cybb|13058|cytochrome b-245, beta polypeptide	AK153259|Cybb|13058|cytochrome b-245, beta polypeptide	AK171526|Cybb|13058|cytochrome b-245, beta polypeptide	FJ168469|Cybb|13058|cytochrome b-245, beta polypeptide	AK154126|Cybb|13058|cytochrome b-245, beta polypeptide	NM_007807|Cybb|13058|cytochrome b-245, beta polypeptide
mm9_v1_chr6_-_30341017_30341032	0.344662	AIRE.p2	AK168071|Zc3hc1|232679|zinc finger, C3HC type 1	AK146228|Zc3hc1|232679|zinc finger, C3HC type 1	AK167992|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr11_-_121090513_121090656	0.343879	AIRE.p2	BC026616|BC017643|217370|cDNA sequence BC017643	AK158402|BC017643|217370|cDNA sequence BC017643	AK170767|BC017643|217370|cDNA sequence BC017643	BC017643|BC017643|217370|cDNA sequence BC017643	NM_144832|BC017643|217370|cDNA sequence BC017643	AK159453|BC017643|217370|cDNA sequence BC017643	AK168104|BC017643|217370|cDNA sequence BC017643	BC027406|BC017643|217370|cDNA sequence BC017643	AK145884|BC017643|217370|cDNA sequence BC017643
mm9_v1_chr9_+_44446796_44446798	0.342328	AIRE.p2	AK156303|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr7_+_129210847_129210947	0.341273	AIRE.p2	AK017851|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr17_+_35068184_35068197	0.339978	AIRE.p2	NM_010893|Neu1|18010|neuraminidase 1
mm9_v1_chr7_+_63049505_63049618	0.338401	AIRE.p2	NM_146190|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK051326|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK044887|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK160939|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK032031|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK086158|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK152033|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK153331|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK161681|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK151454|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK153357|Tubgcp5|233276|tubulin, gamma complex associated protein 5	AK044444|Tubgcp5|233276|tubulin, gamma complex associated protein 5
mm9_v1_chr15_-_78893275_78893359	0.33634	AIRE.p2	BC014743|Ankrd54|223690|ankyrin repeat domain 54	NM_144849|Ankrd54|223690|ankyrin repeat domain 54	DQ884878|Ankrd54|223690|ankyrin repeat domain 54	AK133785|Ankrd54|223690|ankyrin repeat domain 54	AK050440|Ankrd54|223690|ankyrin repeat domain 54	AK143625|Ankrd54|223690|ankyrin repeat domain 54	AK084500|Ankrd54|223690|ankyrin repeat domain 54
mm9_v1_chr3_+_95462705_95462778	0.335371	AIRE.p2	BC003839|Mcl1|17210|myeloid cell leukemia sequence 1	BC021638|Mcl1|17210|myeloid cell leukemia sequence 1	BC005427|Mcl1|17210|myeloid cell leukemia sequence 1	AK159504|Mcl1|17210|myeloid cell leukemia sequence 1	U35623|Mcl1|17210|myeloid cell leukemia sequence 1	GU182318|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr10_-_8605668_8605870	0.334835	AIRE.p2	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr2_+_24935818_24936028	0.333503	AIRE.p2	BC031143|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	NM_028093|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AY364442|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AK008590|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8
mm9_v1_chr8_-_114457667_114457780	0.332787	AIRE.p2	BC100402|Tmem231|234740|transmembrane protein 231	AK155425|Tmem231|234740|transmembrane protein 231	NM_001033321|Tmem231|234740|transmembrane protein 231	AK030046|Tmem231|234740|transmembrane protein 231	BC132428|Tmem231|234740|transmembrane protein 231	BC132430|Tmem231|234740|transmembrane protein 231
mm9_v1_chr9_-_71011053_71011095	0.331503	AIRE.p2	BC024105|Aqp9|64008|aquaporin 9	AK050042|Aqp9|64008|aquaporin 9	NM_022026|Aqp9|64008|aquaporin 9
mm9_v1_chr16_-_22265901_22266018	0.330854	AIRE.p2	BC057996|Tra2b|20462|transformer 2 beta homolog (Drosophila)	X80232|Tra2b|20462|transformer 2 beta homolog (Drosophila)	BC086795|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK080378|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK169483|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK152519|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK167387|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK077418|Tra2b|20462|transformer 2 beta homolog (Drosophila)	BC061177|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK150007|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK049573|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK152761|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK167544|Tra2b|20462|transformer 2 beta homolog (Drosophila)	NM_009186|Tra2b|20462|transformer 2 beta homolog (Drosophila)
mm9_v1_chr10_+_19076344_19076344	0.330141	AIRE.p2	NM_053008|Olig3|94222|oligodendrocyte transcription factor 3
mm9_v1_chr19_-_60937266_60937332	0.330064	AIRE.p2	AF325263|Sfxn4|94281|sideroflexin 4	BC089535|Sfxn4|94281|sideroflexin 4	AK148530|Sfxn4|94281|sideroflexin 4	BC058211|Sfxn4|94281|sideroflexin 4	NM_053198|Sfxn4|94281|sideroflexin 4
mm9_v1_chr12_+_45412878_45412942	0.328702	AIRE.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr6_-_51416921_51416984	0.328668	AIRE.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr10_-_43621485_43621487	0.327033	AIRE.p2	AK170225|Qrsl1|76563|glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
mm9_v1_chr11_+_77524899_77525029	0.325504	AIRE.p2	AK003251|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr18_-_35097374_35097402	0.325404	AIRE.p2	AK028123|Hspa9|15526|heat shock protein 9
mm9_v1_chr10_+_87663839_87663973	0.325126	AIRE.p2	AK013835|Ccdc53|67282|coiled-coil domain containing 53	AK158822|Ccdc53|67282|coiled-coil domain containing 53	NM_001122960|Ccdc53|67282|coiled-coil domain containing 53	NM_026070|Ccdc53|67282|coiled-coil domain containing 53	NM_027487|Ccdc53|67282|coiled-coil domain containing 53	AK017732|Ccdc53|67282|coiled-coil domain containing 53	AK004206|Ccdc53|67282|coiled-coil domain containing 53	AK028599|Ccdc53|67282|coiled-coil domain containing 53	AK009358|Ccdc53|67282|coiled-coil domain containing 53	BC029256|Ccdc53|67282|coiled-coil domain containing 53
mm9_v1_chr17_+_34781733_34781827	0.324603	AIRE.p2	AK146018|Fkbpl|56299|FK506 binding protein-like	BC046338|Fkbpl|56299|FK506 binding protein-like	NM_019873|Fkbpl|56299|FK506 binding protein-like
mm9_v1_chr8_-_95721654_95721683	0.323098	AIRE.p2	AB023631|Ces1d|104158|carboxylesterase 1D	AF378751|Ces1d|104158|carboxylesterase 1D	AK078879|Ces1d|104158|carboxylesterase 1D
mm9_v1_chrX_+_149441011_149441011	0.321647	AIRE.p2	AK132077|Usp51|635253|ubiquitin specific protease 51	NM_001137547|Usp51|635253|ubiquitin specific protease 51
mm9_v1_chr5_-_37087209_37087249	0.321541	AIRE.p2	AK134363|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chr2_+_87366184_87366358	0.320613	AIRE.p2	BC090254|Srp9|27058|signal recognition particle 9
mm9_v1_chr2_+_34262399_34262511	0.320377	AIRE.p2	BC043296|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr19_-_60302398_60302548	0.319242	AIRE.p2	BC061459|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK162079|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed
mm9_v1_chr2_-_87814819_87814819	0.318873	AIRE.p2	AB061229|Olfr74|117005|olfactory receptor 74	NM_054091|Olfr74|117005|olfactory receptor 74
mm9_v1_chr16_+_10412017_10412067	0.318767	AIRE.p2	NM_011955|Nubp1|26425|nucleotide binding protein 1	AK157212|Nubp1|26425|nucleotide binding protein 1	BC031430|Nubp1|26425|nucleotide binding protein 1	BC055436|Nubp1|26425|nucleotide binding protein 1	AK020876|Nubp1|26425|nucleotide binding protein 1	BC047926|Nubp1|26425|nucleotide binding protein 1	AF114170|Nubp1|26425|nucleotide binding protein 1
mm9_v1_chr5_-_139606339_139606437	0.316988	AIRE.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr4_+_44313764_44313857	0.31647	AIRE.p2	AK137000|Melk|17279|maternal embryonic leucine zipper kinase	AK161029|Melk|17279|maternal embryonic leucine zipper kinase	AK011932|Melk|17279|maternal embryonic leucine zipper kinase	NM_010790|Melk|17279|maternal embryonic leucine zipper kinase	AK010498|Melk|17279|maternal embryonic leucine zipper kinase	AK164138|Melk|17279|maternal embryonic leucine zipper kinase	BC055065|Melk|17279|maternal embryonic leucine zipper kinase	AK129076|Melk|17279|maternal embryonic leucine zipper kinase	X95351|Melk|17279|maternal embryonic leucine zipper kinase	AK145021|Melk|17279|maternal embryonic leucine zipper kinase	L76158|Melk|17279|maternal embryonic leucine zipper kinase
mm9_v1_chr3_+_86790507_86790507	0.315925	AIRE.p2	BC057149|Cd1d2|12480|CD1d2 antigen	NM_007640|Cd1d2|12480|CD1d2 antigen
mm9_v1_chr11_-_51419012_51419040	0.315687	AIRE.p2	AK207379|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr12_-_88784769_88784966	0.315494	AIRE.p2	BC050856|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	BC094381|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK012518|Nrp|654309|neural regeneration protein	AK143105|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK042102|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	AK049549|Nrp|654309|neural regeneration protein	AK144828|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	NM_001102565|Alkbh1|211064|alkB, alkylation repair homolog 1 (E. coli)	BC119399|Nrp|654309|neural regeneration protein	BC119401|Nrp|654309|neural regeneration protein	AY753183|Nrp|654309|neural regeneration protein	NM_001013372|Nrp|654309|neural regeneration protein
mm9_v1_chr19_-_29887442_29887463	0.314029	AIRE.p2	BC056759|Ranbp6|240614|RAN binding protein 6	AK044143|Ranbp6|240614|RAN binding protein 6	BC139395|Ranbp6|240614|RAN binding protein 6	BC139396|Ranbp6|240614|RAN binding protein 6	NM_177721|Ranbp6|240614|RAN binding protein 6
mm9_v1_chr19_-_44103644_44103736	0.311279	AIRE.p2	BC024068|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC034834|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC022141|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC025819|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC026766|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	AK050436|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	AK149451|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	NM_001001446|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	NM_001167905|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44
mm9_v1_chr4_-_21694265_21694282	0.310084	AIRE.p2	AK011611|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr11_-_98590680_98590748	0.309787	AIRE.p2	AF126543|Med24|23989|mediator complex subunit 24	AK193218|Med24|23989|mediator complex subunit 24	AK020269|Med24|23989|mediator complex subunit 24	AK154618|Med24|23989|mediator complex subunit 24	AK158385|Med24|23989|mediator complex subunit 24	NM_011869|Med24|23989|mediator complex subunit 24
mm9_v1_chr13_+_51245730_51245816	0.309744	AIRE.p2	
mm9_v1_chr1_-_122167658_122167658	0.30959	AIRE.p2	AK167028|Steap3|68428|STEAP family member 3	NM_001085409|Steap3|68428|STEAP family member 3
mm9_v1_chr13_+_67964262_67964324	0.306402	AIRE.p2	AK133011|BC048507|408058|cDNA sequence BC048507	BC048507|BC048507|408058|cDNA sequence BC048507	NM_001001185|BC048507|408058|cDNA sequence BC048507
mm9_v1_chr7_+_117161821_117161836	0.306345	AIRE.p2	AK079903|Ipo7|233726|importin 7	AK148820|Ipo7|233726|importin 7	AK169981|Ipo7|233726|importin 7
mm9_v1_chr13_+_49678115_49678143	0.305704	AIRE.p2	AB007848|Omd|27047|osteomodulin	NM_012050|Omd|27047|osteomodulin	BC095997|Omd|27047|osteomodulin
mm9_v1_chr4_-_140221801_140221819	0.305372	AIRE.p2	AK028648|Arhgef10l|72754|Rho guanine nucleotide exchange factor (GEF) 10-like	NM_001112722|Arhgef10l|72754|Rho guanine nucleotide exchange factor (GEF) 10-like
mm9_v1_chr7_-_25873560_25873562	0.305176	AIRE.p2	
mm9_v1_chr13_+_113657736_113657889	0.303387	AIRE.p2	
mm9_v1_chr2_+_97306600_97306623	0.302711	AIRE.p2	
mm9_v1_chr17_-_31649139_31649255	0.300677	AIRE.p2	AK213574|Wdr4|57773|WD repeat domain 4	AK164160|Wdr4|57773|WD repeat domain 4	AJ271892|Wdr4|57773|WD repeat domain 4	AJ271893|Wdr4|57773|WD repeat domain 4	AK035125|Wdr4|57773|WD repeat domain 4	BC039272|Wdr4|57773|WD repeat domain 4	AK152271|Wdr4|57773|WD repeat domain 4	AK153161|Wdr4|57773|WD repeat domain 4	AK144821|Wdr4|57773|WD repeat domain 4
mm9_v1_chr7_+_138554108_138554177	0.300042	AIRE.p2	NM_025826|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	AK131628|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain	BC054428|Acadsb|66885|acyl-Coenzyme A dehydrogenase, short/branched chain
mm9_v1_chr16_-_33967064_33967149	0.299874	AIRE.p2	BC003887|Umps|22247|uridine monophosphate synthetase	BC095981|Umps|22247|uridine monophosphate synthetase	AK159808|Umps|22247|uridine monophosphate synthetase	AK159955|Umps|22247|uridine monophosphate synthetase	AK035821|Umps|22247|uridine monophosphate synthetase	AK035997|Umps|22247|uridine monophosphate synthetase	AK090102|Umps|22247|uridine monophosphate synthetase	AK135187|Umps|22247|uridine monophosphate synthetase	NM_009471|Umps|22247|uridine monophosphate synthetase
mm9_v1_chr19_-_44210311_44210378	0.299307	AIRE.p2	BC037640|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	BC027553|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK012163|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK139654|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	NM_001081077|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)
mm9_v1_chr5_-_110698814_110698873	0.29826	AIRE.p2	BC052179|Pgam5|72542|phosphoglycerate mutase family member 5	BC021317|Pgam5|72542|phosphoglycerate mutase family member 5	AK162266|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr7_+_134380580_134380598	0.297918	AIRE.p2	AK218462|Zfp553|233887|zinc finger protein 553
mm9_v1_chr18_+_9957913_9958236	0.297695	AIRE.p2	AK168619|Thoc1|225160|THO complex 1	BC024951|Thoc1|225160|THO complex 1	AK167374|Thoc1|225160|THO complex 1	AK042867|Thoc1|225160|THO complex 1	AK139307|Thoc1|225160|THO complex 1	AK013983|Thoc1|225160|THO complex 1	AK031785|Thoc1|225160|THO complex 1	AK032200|Thoc1|225160|THO complex 1	NM_153552|Thoc1|225160|THO complex 1	AK052835|Thoc1|225160|THO complex 1	AK082591|Thoc1|225160|THO complex 1
mm9_v1_chr3_+_59835700_59835727	0.297404	AIRE.p2	NM_023383|Aadac|67758|arylacetamide deacetylase (esterase)	AK008244|Aadac|67758|arylacetamide deacetylase (esterase)	BC054823|Aadac|67758|arylacetamide deacetylase (esterase)	BC019999|Aadac|67758|arylacetamide deacetylase (esterase)
mm9_v1_chr12_+_70397702_70397722	0.293995	AIRE.p2	AK082528|Klhdc2|69554|kelch domain containing 2	AY513272|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr17_-_27772162_27772222	0.293555	AIRE.p2	BC089323|Rps10|67097|ribosomal protein S10	BC003853|Rps10|67097|ribosomal protein S10	BC019725|Rps10|67097|ribosomal protein S10	AK011065|Rps10|67097|ribosomal protein S10	AK145441|Rps10|67097|ribosomal protein S10	AK151703|Rps10|67097|ribosomal protein S10	AK157104|Rps10|67097|ribosomal protein S10	AK002558|Rps10|67097|ribosomal protein S10	AK008797|Rps10|67097|ribosomal protein S10	AK136533|Rps10|67097|ribosomal protein S10	AK150803|Rps10|67097|ribosomal protein S10	BC086919|Rps10|67097|ribosomal protein S10	AK020219|Rps10|67097|ribosomal protein S10	NM_025963|Rps10|67097|ribosomal protein S10
mm9_v1_chr10_+_101621491_101621538	0.293431	AIRE.p2	NM_001162368|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	AK015051|4930402I19Rik|73798|RIKEN cDNA 4930402I19 gene
mm9_v1_chr5_+_53132872_53132957	0.293054	AIRE.p2	BC062144|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AF411321|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta
mm9_v1_chrX_+_72627673_72627773	0.292135	AIRE.p2	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr1_-_172145380_172145502	0.291986	AIRE.p2	Y10725|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr4_-_11181388_11181409	0.290417	AIRE.p2	AK140829|Ints8|72656|integrator complex subunit 8	NM_001159595|Ints8|72656|integrator complex subunit 8	NM_178112|Ints8|72656|integrator complex subunit 8
mm9_v1_chr5_-_124804538_124804560	0.289395	AIRE.p2	BC103772|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr10_+_98569715_98569826	0.287906	AIRE.p2	BC144819|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC145801|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC099926|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK050233|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK090075|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	NM_027740|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK045302|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)
mm9_v1_chr7_-_20506379_20506493	0.287506	AIRE.p2	AJ563420|Pvr|52118|poliovirus receptor	BC138219|Pvr|52118|poliovirus receptor	BC138220|Pvr|52118|poliovirus receptor	BC032283|Pvr|52118|poliovirus receptor	AB195430|Pvr|52118|poliovirus receptor	BC013673|Pvr|52118|poliovirus receptor	AK078344|Pvr|52118|poliovirus receptor	AK014446|Pvr|52118|poliovirus receptor	AK038747|Pvr|52118|poliovirus receptor	AK080753|Pvr|52118|poliovirus receptor	AK165873|Pvr|52118|poliovirus receptor	NM_027514|Pvr|52118|poliovirus receptor
mm9_v1_chr1_+_169280112_169280187	0.285959	AIRE.p2	AK165730|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	NM_019993|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK154914|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK168261|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK168309|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK168878|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AB296386|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1
mm9_v1_chrX_-_93152223_93152253	0.284075	AIRE.p2	BC032218|Las1l|76130|LAS1-like (S. cerevisiae)	AK018059|Las1l|76130|LAS1-like (S. cerevisiae)	BC141155|Las1l|76130|LAS1-like (S. cerevisiae)
mm9_v1_chr17_-_24580867_24580878	0.283587	AIRE.p2	AK178081|E4f1|13560|E4F transcription factor 1
mm9_v1_chr5_+_106039499_106039528	0.283289	AIRE.p2	AK081556|Lrrc8c|100604|leucine rich repeat containing 8 family, member C
mm9_v1_chr10_+_60552061_60552145	0.283114	AIRE.p2	NM_025273|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	AK007401|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	BC024354|Pcbd1|13180|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
mm9_v1_chr12_+_34114475_34114519	0.282837	AIRE.p2	AK010829|Twistnb|28071|TWIST neighbor	NM_172253|Twistnb|28071|TWIST neighbor	AK016638|Twistnb|28071|TWIST neighbor	AK017016|Twistnb|28071|TWIST neighbor	AK153090|Twistnb|28071|TWIST neighbor	AK160682|Twistnb|28071|TWIST neighbor	BC139162|Twistnb|28071|TWIST neighbor	BC139163|Twistnb|28071|TWIST neighbor	AK017810|Twistnb|28071|TWIST neighbor	AK008677|Twistnb|28071|TWIST neighbor	BC082580|Twistnb|28071|TWIST neighbor
mm9_v1_chrM_+_8606_8716	0.282586	AIRE.p2	AK131579|COX3|17710|cytochrome c oxidase subunit III
mm9_v1_chr12_+_53198729_53198769	0.282574	AIRE.p2	NM_029760|Nubpl|76826|nucleotide binding protein-like	AK152377|Nubpl|76826|nucleotide binding protein-like	AK083643|Nubpl|76826|nucleotide binding protein-like	BC062175|Nubpl|76826|nucleotide binding protein-like	AK010827|Nubpl|76826|nucleotide binding protein-like	AK141257|Nubpl|76826|nucleotide binding protein-like
mm9_v1_chr13_+_33096402_33096415	0.28132	AIRE.p2	AK161581|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	NM_009256|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9
mm9_v1_chr7_-_97605681_97605720	0.281055	AIRE.p2	BC023171|Tmem126a|66271|transmembrane protein 126A	AK005343|Tmem126a|66271|transmembrane protein 126A	AK050267|Tmem126a|66271|transmembrane protein 126A	AK007559|Tmem126a|66271|transmembrane protein 126A	NM_025460|Tmem126a|66271|transmembrane protein 126A
mm9_v1_chr4_+_128365981_128366038	0.280509	AIRE.p2	NM_018774|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC057571|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr7_+_87331726_87331785	0.279647	AIRE.p2	AK145570|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	NM_013659|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK028896|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK173249|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chrX_+_20938001_20938025	0.279074	AIRE.p2	BC137827|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr12_+_16817904_16818081	0.274892	AIRE.p2	BC037656|E2f6|50496|E2F transcription factor 6	AB221552|E2f6|50496|E2F transcription factor 6
mm9_v1_chr18_+_34490797_34490849	0.27484	AIRE.p2	AK004118|Srp19|66384|signal recognition particle 19	AK037009|Srp19|66384|signal recognition particle 19	NM_025527|Srp19|66384|signal recognition particle 19	AK010760|Srp19|66384|signal recognition particle 19	AK152322|Srp19|66384|signal recognition particle 19	AK135508|Srp19|66384|signal recognition particle 19	AK162107|Srp19|66384|signal recognition particle 19	BC051932|Srp19|66384|signal recognition particle 19	AK009412|Srp19|66384|signal recognition particle 19
mm9_v1_chr15_-_72926936_72926959	0.27193	AIRE.p2	AK003962|1110029L17Rik|68722|RIKEN cDNA 1110029L17 gene
mm9_v1_chr2_+_144381976_144382053	0.271718	AIRE.p2	AK158398|Sec23b|27054|SEC23B (S. cerevisiae)	AK153214|Sec23b|27054|SEC23B (S. cerevisiae)	AK146083|Sec23b|27054|SEC23B (S. cerevisiae)	BC011160|Sec23b|27054|SEC23B (S. cerevisiae)	NM_019787|Sec23b|27054|SEC23B (S. cerevisiae)	AK014597|Sec23b|27054|SEC23B (S. cerevisiae)	AK166330|Sec23b|27054|SEC23B (S. cerevisiae)	AK155168|Sec23b|27054|SEC23B (S. cerevisiae)	AK149693|Sec23b|27054|SEC23B (S. cerevisiae)	AK167382|Sec23b|27054|SEC23B (S. cerevisiae)	AK167732|Sec23b|27054|SEC23B (S. cerevisiae)	AK171597|Sec23b|27054|SEC23B (S. cerevisiae)	BC005464|Sec23b|27054|SEC23B (S. cerevisiae)	AK139729|Sec23b|27054|SEC23B (S. cerevisiae)
mm9_v1_chr6_-_149050067_149050107	0.27157	AIRE.p2	AK135015|Dennd5b|320560|DENN/MADD domain containing 5B	AK038858|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr1_+_45402907_45402949	0.271445	AIRE.p2	AK029451|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr16_+_20128178_20128320	0.271371	AIRE.p2	AK004187|Klhl24|75785|kelch-like 24 (Drosophila)
mm9_v1_chr4_+_6292817_6292904	0.271162	AIRE.p2	AK169415|Sdcbp|53378|syndecan binding protein	NM_001098227|Sdcbp|53378|syndecan binding protein	NM_016807|Sdcbp|53378|syndecan binding protein	AK033412|Sdcbp|53378|syndecan binding protein	AF003693|Sdcbp|53378|syndecan binding protein	AK150721|Sdcbp|53378|syndecan binding protein	AK152080|Sdcbp|53378|syndecan binding protein	AK159677|Sdcbp|53378|syndecan binding protein	AK150623|Sdcbp|53378|syndecan binding protein	AK152552|Sdcbp|53378|syndecan binding protein	AK153112|Sdcbp|53378|syndecan binding protein	AK169219|Sdcbp|53378|syndecan binding protein	AK045668|Sdcbp|53378|syndecan binding protein	AK168004|Sdcbp|53378|syndecan binding protein	AK028429|Sdcbp|53378|syndecan binding protein	AK146085|Sdcbp|53378|syndecan binding protein	AK150544|Sdcbp|53378|syndecan binding protein	AK150996|Sdcbp|53378|syndecan binding protein	AK151050|Sdcbp|53378|syndecan binding protein	AK152017|Sdcbp|53378|syndecan binding protein	AK152434|Sdcbp|53378|syndecan binding protein	AK153042|Sdcbp|53378|syndecan binding protein	AK159538|Sdcbp|53378|syndecan binding protein	AK169687|Sdcbp|53378|syndecan binding protein	AK171162|Sdcbp|53378|syndecan binding protein	AK150707|Sdcbp|53378|syndecan binding protein	AK152001|Sdcbp|53378|syndecan binding protein	AK152577|Sdcbp|53378|syndecan binding protein	AK152855|Sdcbp|53378|syndecan binding protein	AK152109|Sdcbp|53378|syndecan binding protein	AK150801|Sdcbp|53378|syndecan binding protein	AK014678|Sdcbp|53378|syndecan binding protein	AK150321|Sdcbp|53378|syndecan binding protein	AK150661|Sdcbp|53378|syndecan binding protein	AK150736|Sdcbp|53378|syndecan binding protein	AK159124|Sdcbp|53378|syndecan binding protein	AK165657|Sdcbp|53378|syndecan binding protein	AK167513|Sdcbp|53378|syndecan binding protein	AK168777|Sdcbp|53378|syndecan binding protein	BC019400|Sdcbp|53378|syndecan binding protein	AK150278|Sdcbp|53378|syndecan binding protein	AF077527|Sdcbp|53378|syndecan binding protein	AK159323|Sdcbp|53378|syndecan binding protein
mm9_v1_chr6_+_134590957_134591017	0.269779	AIRE.p2	NM_026371|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	BC023059|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr17_+_29175540_29175570	0.26796	AIRE.p2	AK182771|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr8_+_71317827_71317912	0.267271	AIRE.p2	AK040574|Ints10|70885|integrator complex subunit 10	AK047093|Ints10|70885|integrator complex subunit 10	AK014939|Ints10|70885|integrator complex subunit 10	NM_027590|Ints10|70885|integrator complex subunit 10	AK147743|Ints10|70885|integrator complex subunit 10	AK169819|Ints10|70885|integrator complex subunit 10	AK030974|Ints10|70885|integrator complex subunit 10	BC031923|Ints10|70885|integrator complex subunit 10	AK083331|Ints10|70885|integrator complex subunit 10	AK034498|Ints10|70885|integrator complex subunit 10
mm9_v1_chr2_-_94252368_94252477	0.266664	AIRE.p2	AK212083|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr11_-_116668593_116668695	0.264061	AIRE.p2	
mm9_v1_chr9_+_44142772_44142803	0.263349	AIRE.p2	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chr8_+_116657473_116657573	0.262328	AIRE.p2	AK088191|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024437|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024446|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AF338424|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK004924|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC069843|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK011172|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC033046|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK008824|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm9_v1_chr11_-_62190182_62190262	0.261576	AIRE.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr10_+_127759711_127759783	0.260937	AIRE.p2	AK213625|Cnpy2|56530|canopy 2 homolog (zebrafish)	BC008261|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK007914|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK013568|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK180663|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr11_-_34647110_34647142	0.259213	AIRE.p2	AK011138|Ccdc99|70385|coiled-coil domain containing 99	BC006674|Ccdc99|70385|coiled-coil domain containing 99	AK012927|Ccdc99|70385|coiled-coil domain containing 99	NM_027411|Ccdc99|70385|coiled-coil domain containing 99
mm9_v1_chr7_+_129210948_129210953	0.258641	AIRE.p2	AK135258|Ubfd1|28018|ubiquitin family domain containing 1	AK140891|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr4_+_106721017_106721031	0.256593	AIRE.p2	AK144320|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr7_-_133839152_133839297	0.254719	AIRE.p2	AK014753|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145468|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC145688|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK053901|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	BC055909|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010828|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK049139|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	NM_029420|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	AK010748|Slx1b|75764|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
mm9_v1_chr1_+_44204769_44204771	0.254223	AIRE.p2	AK164205|Ercc5|22592|excision repair cross-complementing rodent repair deficiency, complementation group 5
mm9_v1_chr5_-_130500116_130500235	0.254117	AIRE.p2	AK148764|Asl|109900|argininosuccinate lyase	AK168739|Asl|109900|argininosuccinate lyase	AK138423|Asl|109900|argininosuccinate lyase	BC016670|Asl|109900|argininosuccinate lyase	NM_133768|Asl|109900|argininosuccinate lyase	AK010922|Asl|109900|argininosuccinate lyase	AK076453|Asl|109900|argininosuccinate lyase	AK140160|Asl|109900|argininosuccinate lyase
mm9_v1_chr10_-_81090257_81090352	0.254059	AIRE.p2	AK013316|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)	BC052763|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)	NM_181586|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)
mm9_v1_chr3_-_65196395_65196552	0.251481	AIRE.p2	AK192841|Ssr3|67437|signal sequence receptor, gamma	AK194871|Ssr3|67437|signal sequence receptor, gamma	AK199053|Ssr3|67437|signal sequence receptor, gamma	AK206034|Ssr3|67437|signal sequence receptor, gamma	BC020335|Ssr3|67437|signal sequence receptor, gamma	CT010172|Ssr3|67437|signal sequence receptor, gamma	AK150255|Ssr3|67437|signal sequence receptor, gamma	AK002818|Ssr3|67437|signal sequence receptor, gamma	AK029353|Ssr3|67437|signal sequence receptor, gamma	NM_026155|Ssr3|67437|signal sequence receptor, gamma	AK088555|Ssr3|67437|signal sequence receptor, gamma	BC011111|Ssr3|67437|signal sequence receptor, gamma	AK076235|Ssr3|67437|signal sequence receptor, gamma
mm9_v1_chr13_+_33096472_33096539	0.250848	AIRE.p2	AK035624|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	BC029900|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	AK087785|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9	U96700|Serpinb9|20723|serine (or cysteine) peptidase inhibitor, clade B, member 9
mm9_v1_chr15_+_79501284_79501317	0.250099	AIRE.p2	AK008133|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK009868|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	NM_172609|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150787|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK013471|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK049442|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150360|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK152843|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK167803|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	BC056920|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)
mm9_v1_chr2_-_52280367_52280416	0.249988	AIRE.p2	BC100307|Arl5a|75423|ADP-ribosylation factor-like 5A	AK147525|Arl5a|75423|ADP-ribosylation factor-like 5A	BC048170|Arl5a|75423|ADP-ribosylation factor-like 5A	BC059931|Arl5a|75423|ADP-ribosylation factor-like 5A	NM_182994|Arl5a|75423|ADP-ribosylation factor-like 5A
mm9_v1_chr7_-_19942264_19942376	0.248856	AIRE.p2	AK075701|Cd3eap|70333|CD3E antigen, epsilon polypeptide associated protein
mm9_v1_chr17_+_45704145_45704512	0.247932	AIRE.p2	AK211181|Slc35b2|73836|solute carrier family 35, member B2	AK212100|Slc35b2|73836|solute carrier family 35, member B2	AK207266|Slc35b2|73836|solute carrier family 35, member B2	AK212091|Slc35b2|73836|solute carrier family 35, member B2	AK214463|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr5_-_143665474_143665607	0.247687	AIRE.p2	
mm9_v1_chr4_-_21694324_21694364	0.246386	AIRE.p2	AK154853|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene	NM_029840|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr12_+_70397667_70397700	0.245941	AIRE.p2	AK078408|Klhdc2|69554|kelch domain containing 2	NM_027117|Klhdc2|69554|kelch domain containing 2
mm9_v1_chr1_+_129702056_129702170	0.245857	AIRE.p2	AK033697|Ccnt2|72949|cyclin T2
mm9_v1_chr2_-_94253040_94253188	0.244735	AIRE.p2	AK208753|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr2_-_52280154_52280300	0.243861	AIRE.p2	
mm9_v1_chr1_+_95395940_95395952	0.243571	AIRE.p2	AK196297|Sept2|18000|septin 2	AK216929|Sept2|18000|septin 2
mm9_v1_chr10_+_5151833_5151833	0.243333	AIRE.p2	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chrM_+_7714_7790	0.241647	AIRE.p2	AF093677|ATP6|17705|ATP synthase F0 subunit 6	BC069931|Gm10925|100191075|predicted gene 10925
mm9_v1_chr17_-_81464406_81464435	0.241202	AIRE.p2	AK012806|Thumpd2|72167|THUMP domain containing 2	NM_028138|Thumpd2|72167|THUMP domain containing 2
mm9_v1_chr8_-_122364230_122364443	0.240575	AIRE.p2	CT010261|Cotl1|72042|coactosin-like 1 (Dictyostelium)	BC011068|Cotl1|72042|coactosin-like 1 (Dictyostelium)	BC010249|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK150888|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK007994|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK008085|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK010052|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK039644|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK151690|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK157694|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK172403|Cotl1|72042|coactosin-like 1 (Dictyostelium)	AK148854|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr2_-_63936044_63936094	0.240251	AIRE.p2	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr2_-_24647157_24647300	0.240242	AIRE.p2	AK020308|Ehmt1|77683|euchromatic histone methyltransferase 1
mm9_v1_chr1_-_187153212_187153265	0.239609	AIRE.p2	AK164435|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK051778|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK088965|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK036182|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK008042|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK043729|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	BC052403|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK050358|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK166832|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial
mm9_v1_chr1_+_138311847_138311988	0.23895	AIRE.p2	AK004833|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	NM_026500|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK013179|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK133731|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	AK076462|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	BC023840|Ddx59|67997|DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
mm9_v1_chr13_-_29947456_29947544	0.238413	AIRE.p2	BC016073|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	NM_144536|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK158546|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK041864|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK018346|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK169761|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK082629|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1	AK045506|Cdkal1|68916|CDK5 regulatory subunit associated protein 1-like 1
mm9_v1_chr11_-_80191456_80191500	0.238226	AIRE.p2	AK135352|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK017667|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	BC055024|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr19_+_34658016_34658052	0.238132	AIRE.p2	AK153226|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	NM_010501|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	AK077459|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	AK151032|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	BC089563|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	L32974|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	BC003804|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3
mm9_v1_chr8_+_63966519_63966706	0.235867	AIRE.p2	AK150763|Cbr4|234309|carbonyl reductase 4	NM_145595|Cbr4|234309|carbonyl reductase 4	AK031756|Cbr4|234309|carbonyl reductase 4	BC009118|Cbr4|234309|carbonyl reductase 4	AK043313|Cbr4|234309|carbonyl reductase 4
mm9_v1_chr13_-_54561296_54561396	0.235718	AIRE.p2	AK216441|Thoc3|73666|THO complex 3
mm9_v1_chrX_+_136014905_136015005	0.234774	AIRE.p2	AK171459|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	NM_175326|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK155588|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK052376|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC112416|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC113128|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene
mm9_v1_chr3_-_86803173_86803261	0.234067	AIRE.p2	FJ594117|Cd1d1|12479|CD1d1 antigen	AK002582|Cd1d1|12479|CD1d1 antigen	BC055902|Cd1d1|12479|CD1d1 antigen	M63695|Cd1d1|12479|CD1d1 antigen	NM_007639|Cd1d1|12479|CD1d1 antigen
mm9_v1_chr1_-_99024782_99024879	0.233849	AIRE.p2	BC139066|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	BC139067|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK132668|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK161249|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK016647|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK029505|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	NM_028942|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1
mm9_v1_chr10_+_97028409_97028443	0.233084	AIRE.p2	AK075737|Lum|17022|lumican	AK085240|Lum|17022|lumican	AK164774|Lum|17022|lumican
mm9_v1_chr7_-_99785544_99785651	0.230913	AIRE.p2	AK048925|Ankrd42|73845|ankyrin repeat domain 42	AK029888|Ankrd42|73845|ankyrin repeat domain 42	AK133339|Ankrd42|73845|ankyrin repeat domain 42	AK033599|Ankrd42|73845|ankyrin repeat domain 42	BC100433|Ankrd42|73845|ankyrin repeat domain 42	AK029511|Ankrd42|73845|ankyrin repeat domain 42	NM_028665|Ankrd42|73845|ankyrin repeat domain 42
mm9_v1_chr19_-_58528838_58529066	0.230896	AIRE.p2	AB000800|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC040251|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC054378|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	NM_010279|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	BC011532|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AF015172|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr8_+_109034784_109034845	0.230257	AIRE.p2	AK045041|Cdh3|12560|cadherin 3	AK164577|Cdh3|12560|cadherin 3	NM_007665|Cdh3|12560|cadherin 3	AK031265|Cdh3|12560|cadherin 3	NM_001037809|Cdh3|12560|cadherin 3	X06340|Cdh3|12560|cadherin 3	BC098459|Cdh3|12560|cadherin 3
mm9_v1_chr7_+_19967358_19967392	0.229857	AIRE.p2	AK141692|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082323|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK145969|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082761|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	NM_007949|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	BC034517|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2
mm9_v1_chr2_+_84877598_84877631	0.228292	AIRE.p2	AK158552|Ssrp1|20833|structure specific recognition protein 1	NM_001136081|Ssrp1|20833|structure specific recognition protein 1	BC004848|Ssrp1|20833|structure specific recognition protein 1
mm9_v1_chr8_+_97381349_97381467	0.228193	AIRE.p2	NM_009090|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	BC099548|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK160053|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK137796|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK146763|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	AK151270|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	D83999|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C	BC002023|Polr2c|20021|polymerase (RNA) II (DNA directed) polypeptide C
mm9_v1_chr12_+_85758189_85758266	0.227825	AIRE.p2	AK016795|Rnf113a2|66381|ring finger protein 113A2	BC116426|Rnf113a2|66381|ring finger protein 113A2	BC058194|Rnf113a2|66381|ring finger protein 113A2
mm9_v1_chr1_-_172145521_172145534	0.227715	AIRE.p2	BC058732|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	NM_010633|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	AK013347|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr17_+_23949101_23949124	0.224317	AIRE.p2	AK081577|Srrm2|75956|serine/arginine repetitive matrix 2
mm9_v1_chr4_+_140258090_140258179	0.224259	AIRE.p2	AK186216|Rcc2|108911|regulator of chromosome condensation 2	AK129370|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr5_+_116010796_116010949	0.223711	AIRE.p2	BC030189|Rplp0|11837|ribosomal protein, large, P0	AK193996|Rplp0|11837|ribosomal protein, large, P0	AK205179|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr6_-_47780444_47780540	0.223332	AIRE.p2	BC138897|Zfp786|330301|zinc finger protein 786	AK080438|Zfp786|330301|zinc finger protein 786	NM_177882|Zfp786|330301|zinc finger protein 786
mm9_v1_chr9_-_36604816_36604957	0.223241	AIRE.p2	AK147776|Ei24|13663|etoposide induced 2.4 mRNA	AK159927|Ei24|13663|etoposide induced 2.4 mRNA	AK145018|Ei24|13663|etoposide induced 2.4 mRNA	AK172233|Ei24|13663|etoposide induced 2.4 mRNA
mm9_v1_chr8_-_112261607_112261664	0.222025	AIRE.p2	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr11_-_61680770_61680775	0.220816	AIRE.p2	AK138613|A530017D24Rik|103880|RIKEN cDNA A530017D24 gene
mm9_v1_chr1_-_33726582_33726638	0.220441	AIRE.p2	D17385|Prim2|19076|DNA primase, p58 subunit	AK153970|Prim2|19076|DNA primase, p58 subunit	BC019500|Prim2|19076|DNA primase, p58 subunit	D13545|Prim2|19076|DNA primase, p58 subunit	NM_008922|Prim2|19076|DNA primase, p58 subunit	AK076095|Prim2|19076|DNA primase, p58 subunit	AK077760|Prim2|19076|DNA primase, p58 subunit	AK168246|Prim2|19076|DNA primase, p58 subunit
mm9_v1_chr1_-_184447549_184447745	0.220396	AIRE.p2	AF015038|Capn2|12334|calpain 2	AK150695|Capn2|12334|calpain 2	AK152094|Capn2|12334|calpain 2	AK152790|Capn2|12334|calpain 2	AK152994|Capn2|12334|calpain 2	AK052141|Capn2|12334|calpain 2	BC054726|Capn2|12334|calpain 2	NM_009794|Capn2|12334|calpain 2	AK154855|Capn2|12334|calpain 2	D38117|Capn2|12334|calpain 2	AK053832|Capn2|12334|calpain 2
mm9_v1_chr7_-_125259660_125259706	0.219376	AIRE.p2	BC051205|Rps15a|267019|ribosomal protein S15A	BC054792|Rps15a|267019|ribosomal protein S15A	NM_170669|Rps15a|267019|ribosomal protein S15A	BC076563|Rps15a|267019|ribosomal protein S15A	AK152932|Rps15a|267019|ribosomal protein S15A	AK008350|Rps15a|267019|ribosomal protein S15A	AK012485|Rps15a|267019|ribosomal protein S15A	AK011514|Rps15a|267019|ribosomal protein S15A	AK012618|Rps15a|267019|ribosomal protein S15A	AK019235|Rps15a|267019|ribosomal protein S15A	AK028135|Rps15a|267019|ribosomal protein S15A	BC086885|Rps15a|267019|ribosomal protein S15A	BC087867|Rps15a|267019|ribosomal protein S15A	AK032522|Rps15a|267019|ribosomal protein S15A	AK010652|Rps15a|267019|ribosomal protein S15A
mm9_v1_chr4_+_116692006_116692070	0.219343	AIRE.p2	NM_001111277|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	NM_175135|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK172173|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK145856|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK172302|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3
mm9_v1_chr11_-_34647016_34647097	0.217851	AIRE.p2	AK139553|Ccdc99|70385|coiled-coil domain containing 99	AK163303|Ccdc99|70385|coiled-coil domain containing 99
mm9_v1_chr9_-_58097569_58097598	0.21772	AIRE.p2	AK052305|Pml|18854|promyelocytic leukemia	AK054135|Pml|18854|promyelocytic leukemia	AK028044|Pml|18854|promyelocytic leukemia	NM_008884|Pml|18854|promyelocytic leukemia	NM_178087|Pml|18854|promyelocytic leukemia
mm9_v1_chr18_+_48206298_48206369	0.217454	AIRE.p2	
mm9_v1_chr6_+_30459848_30459899	0.217288	AIRE.p2	AK006038|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene	NM_027073|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene	BC049755|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene
mm9_v1_chr3_-_103546233_103546253	0.216297	AIRE.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr15_-_102993714_102993747	0.21568	AIRE.p2	BC062960|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	NM_027885|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK090367|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK198888|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase	AK204061|Smug1|71726|single-strand selective monofunctional uracil DNA glycosylase
mm9_v1_chr2_+_69588414_69588564	0.214673	AIRE.p2	AK079931|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK045812|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr3_+_134944239_134944255	0.214641	AIRE.p2	BC036998|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr9_-_96338457_96338611	0.213176	AIRE.p2	AK050822|BC043934|270185|cDNA sequence BC043934
mm9_v1_chr5_-_72978788_72978788	0.212677	AIRE.p2	AK084047|Gm5868|545758|predicted gene 5868	NM_001024147|Gm5868|545758|predicted gene 5868
mm9_v1_chr8_+_109206967_109207060	0.212226	AIRE.p2	AK085030|Tmco7|272538|transmembrane and coiled-coil domains 7	NM_173037|Tmco7|272538|transmembrane and coiled-coil domains 7	AK077757|Tmco7|272538|transmembrane and coiled-coil domains 7	AK054283|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066134|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066869|Tmco7|272538|transmembrane and coiled-coil domains 7	BC069838|Tmco7|272538|transmembrane and coiled-coil domains 7	AK076373|Tmco7|272538|transmembrane and coiled-coil domains 7	AK173250|Tmco7|272538|transmembrane and coiled-coil domains 7
mm9_v1_chr18_+_36953553_36953593	0.212195	AIRE.p2	BC024881|Zmat2|66492|zinc finger, matrin type 2	NM_025594|Zmat2|66492|zinc finger, matrin type 2	AK012091|Zmat2|66492|zinc finger, matrin type 2	BC089501|Zmat2|66492|zinc finger, matrin type 2	AK008717|Zmat2|66492|zinc finger, matrin type 2
mm9_v1_chr9_-_75407338_75407491	0.210542	AIRE.p2	AF237630|Tmod3|50875|tropomodulin 3	AF177172|Tmod3|50875|tropomodulin 3	BC082595|Tmod3|50875|tropomodulin 3	AK167723|Tmod3|50875|tropomodulin 3	AK017725|Tmod3|50875|tropomodulin 3	AK050372|Tmod3|50875|tropomodulin 3	AK082971|Tmod3|50875|tropomodulin 3	AK147017|Tmod3|50875|tropomodulin 3	AK169218|Tmod3|50875|tropomodulin 3	NM_016963|Tmod3|50875|tropomodulin 3
mm9_v1_chr6_-_148937854_148937926	0.210529	AIRE.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr6_-_122289630_122289670	0.210488	AIRE.p2	S73882|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73883|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73884|Phc1|13619|polyhomeotic-like 1 (Drosophila)	BC046535|Phc1|13619|polyhomeotic-like 1 (Drosophila)	AK167590|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr9_+_21760196_21760229	0.210352	AIRE.p2	NM_025870|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC150493|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK009864|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	BC019749|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene	AK043948|2310047B19Rik|66962|RIKEN cDNA 2310047B19 gene
mm9_v1_chr5_+_130371592_130371637	0.209733	AIRE.p2	AK010551|Scand3|71970|SCAN domain containing 3	NM_183088|Scand3|71970|SCAN domain containing 3	BC137610|Scand3|71970|SCAN domain containing 3
mm9_v1_chr9_-_57110250_57110427	0.207806	AIRE.p2	BC150963|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	BC150965|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	BC118527|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK006055|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK145074|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK155015|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK029230|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK031730|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK044396|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK155487|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK165963|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	NM_028820|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK080676|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK169617|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene
mm9_v1_chr11_-_120489993_120490076	0.206683	AIRE.p2	AK038934|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	AK083165|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm9_v1_chr6_+_47827535_47827591	0.204501	AIRE.p2	NM_146175|Zfp282|101095|zinc finger protein 282	AK088531|Zfp282|101095|zinc finger protein 282	AK148038|Zfp282|101095|zinc finger protein 282
mm9_v1_chr10_+_92916150_92916214	0.203371	AIRE.p2	AK134931|Lta4h|16993|leukotriene A4 hydrolase	M63848|Lta4h|16993|leukotriene A4 hydrolase	AK032828|Lta4h|16993|leukotriene A4 hydrolase
mm9_v1_chr8_+_75247184_75247186	0.202364	AIRE.p2	AK146847|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK159076|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK169433|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_001113248|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_009188|Sin3b|20467|transcriptional regulator, SIN3B (yeast)
mm9_v1_chr14_-_64162744_64162804	0.202241	AIRE.p2	BC046275|Mtmr9|210376|myotubularin related protein 9	NM_177594|Mtmr9|210376|myotubularin related protein 9	AK035026|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr8_+_108424267_108424373	0.200872	AIRE.p2	AK153861|Pskh1|244631|protein serine kinase H1	AK053397|Pskh1|244631|protein serine kinase H1	AK154570|Pskh1|244631|protein serine kinase H1	AK166338|Pskh1|244631|protein serine kinase H1	BC050128|Pskh1|244631|protein serine kinase H1	NM_173432|Pskh1|244631|protein serine kinase H1
mm9_v1_chr7_-_34981664_34981695	0.200567	AIRE.p2	BC115797|Pdcd2l|68079|programmed cell death 2-like	AK077948|Pdcd2l|68079|programmed cell death 2-like	NM_026549|Pdcd2l|68079|programmed cell death 2-like	AK151495|Pdcd2l|68079|programmed cell death 2-like	AK003339|Pdcd2l|68079|programmed cell death 2-like	AK154811|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr16_+_14163356_14163402	0.200408	AIRE.p2	NM_001114085|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	NM_023317|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK150826|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	AK166858|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)	BC023267|Nde1|67203|nuclear distribution gene E homolog 1 (A nidulans)
mm9_v1_chr17_-_59152686_59152744	0.198546	AIRE.p2	BC057657|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK147867|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK083846|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK002641|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	NM_026497|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm9_v1_chr6_+_56664888_56664904	0.197685	AIRE.p2	AK147365|Avl9|78937|AVL9 homolog (S. cerevisiase)	NM_030235|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr8_+_70018744_70018846	0.196541	AIRE.p2	AK007583|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	BC012972|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_001168577|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	AJ251710|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_010874|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)
mm9_v1_chr11_-_110112926_110113089	0.196193	AIRE.p2	BC132417|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	BC132419|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK053384|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AF498361|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK042934|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK018242|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK040652|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	NM_001166556|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	NM_001166557|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	NM_147218|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6
mm9_v1_chr6_+_87852230_87852326	0.196192	AIRE.p2	AK193696|Copg|54161|coatomer protein complex, subunit gamma	AK194411|Copg|54161|coatomer protein complex, subunit gamma	AK195632|Copg|54161|coatomer protein complex, subunit gamma	AK197699|Copg|54161|coatomer protein complex, subunit gamma	AK201780|Copg|54161|coatomer protein complex, subunit gamma	AK204845|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr10_+_77888414_77888501	0.193148	AIRE.p2	NM_007793|Cstb|13014|cystatin B	AK002403|Cstb|13014|cystatin B	BC056170|Cstb|13014|cystatin B	AK151205|Cstb|13014|cystatin B
mm9_v1_chr11_+_101443529_101443628	0.192017	AIRE.p2	AK146019|Tmem106a|217203|transmembrane protein 106A	NM_144830|Tmem106a|217203|transmembrane protein 106A	AK154217|Tmem106a|217203|transmembrane protein 106A	AK150285|Tmem106a|217203|transmembrane protein 106A	AK152741|Tmem106a|217203|transmembrane protein 106A	AK151842|Tmem106a|217203|transmembrane protein 106A	BC033268|Tmem106a|217203|transmembrane protein 106A	AK170900|Tmem106a|217203|transmembrane protein 106A	AK172282|Tmem106a|217203|transmembrane protein 106A	AK149650|Tmem106a|217203|transmembrane protein 106A	AK168437|Tmem106a|217203|transmembrane protein 106A	AK169081|Tmem106a|217203|transmembrane protein 106A
mm9_v1_chr8_-_87784612_87784676	0.191493	AIRE.p2	AK219106|Vps35|65114|vacuolar protein sorting 35
mm9_v1_chr19_+_56622750_56622913	0.19088	AIRE.p2	AK033384|Nhlrc2|66866|NHL repeat containing 2	NM_025811|Nhlrc2|66866|NHL repeat containing 2	BC095956|Nhlrc2|66866|NHL repeat containing 2	BC138190|Nhlrc2|66866|NHL repeat containing 2	BC138191|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr1_-_38109910_38110011	0.190635	AIRE.p2	AK003934|Rev1|56210|REV1 homolog (S. cerevisiae)
mm9_v1_chr19_-_33466561_33466800	0.190255	AIRE.p2	DQ788834|Rnls|67795|renalase, FAD-dependent amine oxidase	BC052355|Rnls|67795|renalase, FAD-dependent amine oxidase	AK014866|Rnls|67795|renalase, FAD-dependent amine oxidase	AK018322|Rnls|67795|renalase, FAD-dependent amine oxidase	AK170321|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001146342|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001167818|Rnls|67795|renalase, FAD-dependent amine oxidase
mm9_v1_chr10_+_53057491_53057558	0.189536	AIRE.p2	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr4_+_55093796_55093934	0.18883	AIRE.p2	AK035041|Zfp462|242466|zinc finger protein 462
mm9_v1_chr2_-_59720568_59720662	0.187759	AIRE.p2	AK178836|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	AK011391|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	BC050792|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	BC061948|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	NM_001159636|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1	NM_028118|Wdsub1|72137|WD repeat, SAM and U-box domain containing 1
mm9_v1_chr15_+_6395353_6395370	0.186327	AIRE.p2	X05475|C9|12279|complement component 9
mm9_v1_chr19_-_4906607_4906628	0.185618	AIRE.p2	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr6_-_127076410_127076426	0.185616	AIRE.p2	AK011225|Ccnd2|12444|cyclin D2
mm9_v1_chr2_+_101726413_101726444	0.18557	AIRE.p2	AK154731|Commd9|76501|COMM domain containing 9	AK007640|Commd9|76501|COMM domain containing 9	NM_029635|Commd9|76501|COMM domain containing 9	BC060058|Commd9|76501|COMM domain containing 9	BC030374|Commd9|76501|COMM domain containing 9	BC040688|Commd9|76501|COMM domain containing 9	BC043684|Commd9|76501|COMM domain containing 9
mm9_v1_chr19_-_4037895_4037928	0.183565	AIRE.p2	D30687|Gstp1|14870|glutathione S-transferase, pi 1	NM_013541|Gstp1|14870|glutathione S-transferase, pi 1	BC002048|Gstp1|14870|glutathione S-transferase, pi 1	BC061109|Gstp1|14870|glutathione S-transferase, pi 1
mm9_v1_chr9_+_65142065_65142184	0.182284	AIRE.p2	NM_001044389|Clpx|270166|caseinolytic peptidase X (E.coli)	NM_011802|Clpx|270166|caseinolytic peptidase X (E.coli)	BC061153|Clpx|270166|caseinolytic peptidase X (E.coli)	AK041024|Clpx|270166|caseinolytic peptidase X (E.coli)	AK087848|Clpx|270166|caseinolytic peptidase X (E.coli)	AF134983|Clpx|270166|caseinolytic peptidase X (E.coli)	AK165208|Clpx|270166|caseinolytic peptidase X (E.coli)	AK080339|Clpx|270166|caseinolytic peptidase X (E.coli)	AJ276991|Clpx|270166|caseinolytic peptidase X (E.coli)
mm9_v1_chr9_+_92502076_92502169	0.182046	AIRE.p2	
mm9_v1_chr5_+_136293975_136293975	0.181494	AIRE.p2	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr11_-_50125157_50125288	0.18099	AIRE.p2	L23865|Canx|12330|calnexin	L18888|Canx|12330|calnexin
mm9_v1_chr17_+_21703971_21704009	0.177918	AIRE.p2	AK164108|Zfp948|381066|zinc finger protein 948	BC049807|Zfp948|381066|zinc finger protein 948	BC076634|Zfp948|381066|zinc finger protein 948	NM_001002008|Zfp948|381066|zinc finger protein 948
mm9_v1_chr14_+_66456138_66456255	0.17774	AIRE.p2	AK078345|Ccdc25|67179|coiled-coil domain containing 25	NM_145944|Ccdc25|67179|coiled-coil domain containing 25	AK012172|Ccdc25|67179|coiled-coil domain containing 25	AK139180|Ccdc25|67179|coiled-coil domain containing 25	BC025545|Ccdc25|67179|coiled-coil domain containing 25	AK089982|Ccdc25|67179|coiled-coil domain containing 25	AK016286|Ccdc25|67179|coiled-coil domain containing 25	BC148235|Ccdc25|67179|coiled-coil domain containing 25	BC128015|Ccdc25|67179|coiled-coil domain containing 25
mm9_v1_chr2_-_125657845_125657847	0.177632	AIRE.p2	
mm9_v1_chr8_-_35153699_35153753	0.177226	AIRE.p2	
mm9_v1_chr5_-_125914417_125914513	0.177053	AIRE.p2	BC066077|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	NM_203319|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	BC080298|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	AK148257|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37
mm9_v1_chr11_-_116711485_116711487	0.176651	AIRE.p2	
mm9_v1_chr2_+_119444452_119444483	0.176035	AIRE.p2	AF305710|Nusap1|108907|nucleolar and spindle associated protein 1	AK042697|Nusap1|108907|nucleolar and spindle associated protein 1	AK044819|Nusap1|108907|nucleolar and spindle associated protein 1	AK076028|Nusap1|108907|nucleolar and spindle associated protein 1	AK088389|Nusap1|108907|nucleolar and spindle associated protein 1	AK038174|Nusap1|108907|nucleolar and spindle associated protein 1	BC004787|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr1_-_72330767_72330887	0.175472	AIRE.p2	AF232011|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	BC013530|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AF242204|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK090327|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK135714|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK162100|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	AK010260|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase	NM_023523|Pecr|111175|peroxisomal trans-2-enoyl-CoA reductase
mm9_v1_chr7_-_148358709_148358768	0.17428	AIRE.p2	AK145173|Rnh1|107702|ribonuclease/angiogenin inhibitor 1	NM_001172100|Rnh1|107702|ribonuclease/angiogenin inhibitor 1
mm9_v1_chr3_+_129539656_129539716	0.173944	AIRE.p2	NM_007686|Cfi|12630|complement component factor i	U47810|Cfi|12630|complement component factor i	BC150751|Cfi|12630|complement component factor i
mm9_v1_chr18_-_77870871_77870990	0.173634	AIRE.p2	AK009215|2310007O11Rik|74177|RIKEN cDNA 2310007O11 gene
mm9_v1_chr17_-_56098803_56098845	0.173294	AIRE.p2	
mm9_v1_chr7_-_133709864_133709898	0.173122	AIRE.p2	BC024855|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	NM_146200|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK168160|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK168174|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK076165|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK152693|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK160078|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C
mm9_v1_chr5_+_53174293_53174344	0.17278	AIRE.p2	AK138997|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK049511|Zcchc4|78796|zinc finger, CCHC domain containing 4	NM_030185|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK019621|Zcchc4|78796|zinc finger, CCHC domain containing 4	AK143805|Zcchc4|78796|zinc finger, CCHC domain containing 4
mm9_v1_chr19_+_37282150_37282364	0.171567	AIRE.p2	AK007511|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132455|March5|69104|membrane-associated ring finger (C3HC4) 5	BC132457|March5|69104|membrane-associated ring finger (C3HC4) 5	BC064752|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107215|March5|69104|membrane-associated ring finger (C3HC4) 5	BC107214|March5|69104|membrane-associated ring finger (C3HC4) 5
mm9_v1_chr4_+_86394436_86394546	0.170424	AIRE.p2	AK155220|Dennd4c|329877|DENN/MADD domain containing 4C	NM_001081014|Dennd4c|329877|DENN/MADD domain containing 4C	NM_184088|Dennd4c|329877|DENN/MADD domain containing 4C	AK154950|Dennd4c|329877|DENN/MADD domain containing 4C
mm9_v1_chr10_+_12728252_12728328	0.169471	AIRE.p2	NM_175102|Sf3b5|66125|splicing factor 3b, subunit 5	BC006603|Sf3b5|66125|splicing factor 3b, subunit 5	AK010348|Sf3b5|66125|splicing factor 3b, subunit 5	AK003475|Sf3b5|66125|splicing factor 3b, subunit 5	AK009874|Sf3b5|66125|splicing factor 3b, subunit 5
mm9_v1_chr11_-_53520800_53520809	0.168188	AIRE.p2	AK144155|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr3_+_84781329_84781358	0.167977	AIRE.p2	
mm9_v1_chr12_-_70329149_70329198	0.167519	AIRE.p2	AF036898|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	AK011194|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	BC052170|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	BC063772|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	AK172024|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	AK077592|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)	NM_011133|Pole2|18974|polymerase (DNA directed), epsilon 2 (p59 subunit)
mm9_v1_chr16_+_23609986_23610176	0.166445	AIRE.p2	NM_023386|Rtp4|67775|receptor transporter protein 4	AK018021|Rtp4|67775|receptor transporter protein 4	AJ251364|Rtp4|67775|receptor transporter protein 4	AK007477|Rtp4|67775|receptor transporter protein 4	BC024872|Rtp4|67775|receptor transporter protein 4	AY562228|Rtp4|67775|receptor transporter protein 4
mm9_v1_chr2_-_38080023_38080025	0.166246	AIRE.p2	AK033323|8030493G06Rik|320880|RIKEN cDNA 8030493G06 gene
mm9_v1_chr14_-_70107206_70107408	0.166073	AIRE.p2	BC052536|R3hcc1|71843|R3H domain and coiled-coil containing 1	BC059860|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK032854|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK156843|R3hcc1|71843|R3H domain and coiled-coil containing 1	NM_001146012|R3hcc1|71843|R3H domain and coiled-coil containing 1
mm9_v1_chr5_+_149114763_149114791	0.165349	AIRE.p2	AK019985|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr2_+_166849936_166849995	0.164763	AIRE.p2	
mm9_v1_chr4_+_58298833_58298983	0.163841	AIRE.p2	NM_001037127|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037128|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037129|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037130|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001165996|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_010944|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37708|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37709|Musk|18198|muscle, skeletal, receptor tyrosine kinase	BC100342|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY360453|Musk|18198|muscle, skeletal, receptor tyrosine kinase	X86444|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955296|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955297|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955298|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956403|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956404|Musk|18198|muscle, skeletal, receptor tyrosine kinase
mm9_v1_chr7_+_148127289_148127427	0.162662	AIRE.p2	AK171694|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)
mm9_v1_chr3_+_102877936_102877949	0.162171	AIRE.p2	NM_001033303|Ampd1|229665|adenosine monophosphate deaminase 1	AK137549|Ampd1|229665|adenosine monophosphate deaminase 1	AK132524|Ampd1|229665|adenosine monophosphate deaminase 1
mm9_v1_chr2_-_163462584_163462669	0.16197	AIRE.p2	AK128955|Serinc3|26943|serine incorporator 3
mm9_v1_chr5_-_138628389_138628461	0.161955	AIRE.p2	AK207383|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC058583|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_009315|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK154867|Taf6|21343|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr11_+_51085400_51085500	0.161874	AIRE.p2	AF005423|Clk4|12750|CDC like kinase 4	AK161739|Clk4|12750|CDC like kinase 4
mm9_v1_chr8_-_96496001_96496082	0.160543	AIRE.p2	AK197102|Amfr|23802|autocrine motility factor receptor
mm9_v1_chr6_+_133055256_133055343	0.160308	AIRE.p2	BC053418|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene	NM_001163445|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene	AK031684|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene	AK077261|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene	AK076076|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene	AK050460|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene	AK170805|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene	AK005205|2700089E24Rik|381820|RIKEN cDNA 2700089E24 gene
mm9_v1_chr10_-_92544356_92544371	0.160058	AIRE.p2	BC115566|4930485B16Rik|380654|RIKEN cDNA 4930485B16 gene	AK053219|4930485B16Rik|380654|RIKEN cDNA 4930485B16 gene	BC115567|4930485B16Rik|380654|RIKEN cDNA 4930485B16 gene
mm9_v1_chr2_-_109118405_109118446	0.15759	AIRE.p2	BC115926|Mett5d1|76894|methyltransferase 5 domain containing 1	BC117549|Mett5d1|76894|methyltransferase 5 domain containing 1	BC106186|Mett5d1|76894|methyltransferase 5 domain containing 1	BC089533|Mett5d1|76894|methyltransferase 5 domain containing 1	AK002682|Mett5d1|76894|methyltransferase 5 domain containing 1	NM_029790|Mett5d1|76894|methyltransferase 5 domain containing 1
mm9_v1_chr2_+_152695336_152695453	0.157584	AIRE.p2	AK167030|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)	AK011311|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)
mm9_v1_chr5_+_123939313_123939335	0.157034	AIRE.p2	BC150919|Lrrc43|381741|leucine rich repeat containing 43	AK133051|Lrrc43|381741|leucine rich repeat containing 43	NM_001033461|Lrrc43|381741|leucine rich repeat containing 43	AK167318|Lrrc43|381741|leucine rich repeat containing 43	AK167729|Lrrc43|381741|leucine rich repeat containing 43
mm9_v1_chr11_+_58660666_58660700	0.156355	AIRE.p2	
mm9_v1_chr10_+_80392814_80392835	0.155934	AIRE.p2	AK154952|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK010420|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	AK149895|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	BC023815|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	NM_008655|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta	X54149|Gadd45b|17873|growth arrest and DNA-damage-inducible 45 beta
mm9_v1_chr12_-_82633781_82633909	0.155384	AIRE.p2	AY138960|Synj2bp|24071|synaptojanin 2 binding protein	BC027433|Synj2bp|24071|synaptojanin 2 binding protein	AK013474|Synj2bp|24071|synaptojanin 2 binding protein	AK163362|Synj2bp|24071|synaptojanin 2 binding protein	AK008254|Synj2bp|24071|synaptojanin 2 binding protein	AY566156|Synj2bp|24071|synaptojanin 2 binding protein	AK008054|Synj2bp|24071|synaptojanin 2 binding protein	AK078422|Synj2bp|24071|synaptojanin 2 binding protein	AK030379|Synj2bp|24071|synaptojanin 2 binding protein	AK033514|Synj2bp|24071|synaptojanin 2 binding protein	NM_025292|Synj2bp|24071|synaptojanin 2 binding protein
mm9_v1_chr8_-_108223598_108223720	0.154836	AIRE.p2	BC004682|Acd|497652|adrenocortical dysplasia
mm9_v1_chr7_-_133709900_133709929	0.154802	AIRE.p2	BC025032|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK013160|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK009925|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK088076|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C	AK166743|Eif3c|56347|eukaryotic translation initiation factor 3, subunit C
mm9_v1_chr1_+_87801908_87801932	0.15379	AIRE.p2	AK194904|Itm2c|64294|integral membrane protein 2C	AK207985|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr11_+_100181296_100181331	0.153738	AIRE.p2	AK150813|Eif1|20918|eukaryotic translation initiation factor 1	AK151575|Eif1|20918|eukaryotic translation initiation factor 1	AK152194|Eif1|20918|eukaryotic translation initiation factor 1	AK169763|Eif1|20918|eukaryotic translation initiation factor 1	AK148032|Eif1|20918|eukaryotic translation initiation factor 1	AK151070|Eif1|20918|eukaryotic translation initiation factor 1	BC003463|Eif1|20918|eukaryotic translation initiation factor 1	NM_011508|Eif1|20918|eukaryotic translation initiation factor 1	BC081429|Eif1|20918|eukaryotic translation initiation factor 1	AF129888|Eif1|20918|eukaryotic translation initiation factor 1	BC010791|Eif1|20918|eukaryotic translation initiation factor 1	BC096691|Eif1|20918|eukaryotic translation initiation factor 1	BC096656|Eif1|20918|eukaryotic translation initiation factor 1
mm9_v1_chr5_-_21371421_21371421	0.153684	AIRE.p2	AF529192|Slc26a5|80979|solute carrier family 26, member 5	NM_030727|Slc26a5|80979|solute carrier family 26, member 5
mm9_v1_chr3_-_62409061_62409061	0.151754	AIRE.p2	AK136826|Gpr149|229357|G protein-coupled receptor 149	NM_177346|Gpr149|229357|G protein-coupled receptor 149
mm9_v1_chr19_+_26822892_26822948	0.151588	AIRE.p2	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr5_+_93602126_93602279	0.151459	AIRE.p2	AK018083|Sept11|52398|septin 11	AK075989|Sept11|52398|septin 11
mm9_v1_chr6_-_137118238_137118241	0.150554	AIRE.p2	NM_001164212|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	NM_001164214|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr5_+_121847967_121848031	0.14886	AIRE.p2	AK167405|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK167491|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK049325|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	NM_172722|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK149758|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC132172|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC138093|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK165175|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC055480|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	AK052060|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC082314|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC106182|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit	BC037595|Naa25|231713|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm9_v1_chr2_-_18314387_18314456	0.14829	AIRE.p2	AK144228|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	BC080300|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK133582|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	AK012505|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_001190817|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1	NM_007869|Dnajc1|13418|DnaJ (Hsp40) homolog, subfamily C, member 1
mm9_v1_chr7_-_52230179_52230183	0.147846	AIRE.p2	AK035790|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr3_-_94937886_94937954	0.145946	AIRE.p2	BC028867|Scnm1|69269|sodium channel modifier 1	AK013948|Scnm1|69269|sodium channel modifier 1	NM_001163573|Scnm1|69269|sodium channel modifier 1	NM_027013|Scnm1|69269|sodium channel modifier 1
mm9_v1_chr3_+_137806778_137806871	0.145906	AIRE.p2	AK008262|2010015P12Rik|70189|RIKEN cDNA 2010015P12 gene
mm9_v1_chr5_+_89012600_89012641	0.144721	AIRE.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr3_-_105746659_105746682	0.144654	AIRE.p2	U29530|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr10_+_80720062_80720086	0.144376	AIRE.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr11_-_5662259_5662400	0.144191	AIRE.p2	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr2_+_177493957_177493997	0.144118	AIRE.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr12_-_42212538_42212554	0.143901	AIRE.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr5_+_145844689_145844781	0.143742	AIRE.p2	AB024984|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	NM_019767|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK003986|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK145663|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK076107|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	BC001988|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK002475|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A
mm9_v1_chr2_-_127033968_127034003	0.142231	AIRE.p2	BC117065|1810024B03Rik|329509|RIKEN cDNA 1810024B03 gene	BC119086|1810024B03Rik|329509|RIKEN cDNA 1810024B03 gene	AK019023|1810024B03Rik|329509|RIKEN cDNA 1810024B03 gene	AK029416|1810024B03Rik|329509|RIKEN cDNA 1810024B03 gene
mm9_v1_chr18_-_36926866_36926900	0.139145	AIRE.p2	
mm9_v1_chr1_-_95316709_95316785	0.137996	AIRE.p2	
mm9_v1_chr18_+_37105758_37105860	0.137975	AIRE.p2	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chrX_+_159207693_159207814	0.137003	AIRE.p2	AK206156|Rbbp7|245688|retinoblastoma binding protein 7
mm9_v1_chr4_-_133101802_133101911	0.136771	AIRE.p2	Y15522|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	X81443|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	BC011253|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012777|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK032673|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012321|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK146323|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr8_-_98412271_98412300	0.136457	AIRE.p2	AK098166|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK167767|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	BC089015|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK155075|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK149886|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK149926|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK136556|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK152921|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial
mm9_v1_chr15_-_3945704_3945774	0.135416	AIRE.p2	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr10_+_80719921_80719943	0.135193	AIRE.p2	L33340|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr14_+_21655879_21655945	0.135148	AIRE.p2	NM_008873|Plau|18792|plasminogen activator, urokinase	AK054349|Plau|18792|plasminogen activator, urokinase	X02389|Plau|18792|plasminogen activator, urokinase	BC120709|Plau|18792|plasminogen activator, urokinase	BC120713|Plau|18792|plasminogen activator, urokinase	BC145037|Plau|18792|plasminogen activator, urokinase
mm9_v1_chr2_+_119456102_119456195	0.135135	AIRE.p2	BC009096|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr6_-_126799101_126799171	0.134366	AIRE.p2	BC058378|Ndufa9|66108|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	AK003214|Ndufa9|66108|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	AK012366|Ndufa9|66108|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	AK003137|Ndufa9|66108|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	NM_025358|Ndufa9|66108|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9
mm9_v1_chr6_-_149049906_149050060	0.134288	AIRE.p2	BC132199|Dennd5b|320560|DENN/MADD domain containing 5B	BC132535|Dennd5b|320560|DENN/MADD domain containing 5B	BC145128|Dennd5b|320560|DENN/MADD domain containing 5B	AK052296|Dennd5b|320560|DENN/MADD domain containing 5B	AK050728|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr8_+_109417539_109417610	0.134205	AIRE.p2	NM_011574|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	BC068113|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK144455|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK146263|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK150862|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK168470|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK173318|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)
mm9_v1_chr7_+_90780446_90780552	0.133759	AIRE.p2	AK077328|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK142503|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK080060|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK085852|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK009980|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC031733|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK158178|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC058226|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	NM_023377|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AY007808|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AF480302|Stard5|170460|StAR-related lipid transfer (START) domain containing 5
mm9_v1_chr18_-_67712374_67712430	0.133606	AIRE.p2	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr12_-_56181090_56181103	0.13267	AIRE.p2	BC056967|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene	AK079348|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene	AK012621|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene	NM_028314|2700097O09Rik|72658|RIKEN cDNA 2700097O09 gene
mm9_v1_chr7_-_20250303_20250406	0.132193	AIRE.p2	AK218417|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	BC022172|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK148080|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	D67067|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK152410|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK152809|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK171901|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	AK165742|Clptm1|56457|cleft lip and palate associated transmembrane protein 1	NM_019649|Clptm1|56457|cleft lip and palate associated transmembrane protein 1
mm9_v1_chr7_-_107663293_107663468	0.131999	AIRE.p2	AK139680|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	BC048501|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	NM_153527|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13	AF419292|Dnajb13|69387|DnaJ (Hsp40) related, subfamily B, member 13
mm9_v1_chr1_+_165925016_165925075	0.131664	AIRE.p2	AK139786|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	BC052693|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	AK013137|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	BC038687|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	BC050143|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene	NM_027279|2810422O20Rik|69962|RIKEN cDNA 2810422O20 gene
mm9_v1_chr11_+_44430784_44430845	0.130445	AIRE.p2	
mm9_v1_chr15_-_82624638_82624663	0.128444	AIRE.p2	BC023241|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr5_+_110660011_110660183	0.128376	AIRE.p2	AK132187|Ankle2|71782|ankyrin repeat and LEM domain containing 2	BC065071|Ankle2|71782|ankyrin repeat and LEM domain containing 2	NM_027922|Ankle2|71782|ankyrin repeat and LEM domain containing 2	AK043925|Ankle2|71782|ankyrin repeat and LEM domain containing 2
mm9_v1_chr16_+_21794392_21794464	0.1275	AIRE.p2	AK004850|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene	AK005305|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene	AK031500|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene
mm9_v1_chr15_+_12082671_12082674	0.12685	AIRE.p2	AK158938|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr5_+_136470670_136470775	0.126692	AIRE.p2	AK012137|Dtx2|74198|deltex 2 homolog (Drosophila)	AK054443|Dtx2|74198|deltex 2 homolog (Drosophila)	AK044105|Dtx2|74198|deltex 2 homolog (Drosophila)	BC024925|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015423|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015424|Dtx2|74198|deltex 2 homolog (Drosophila)	NM_023742|Dtx2|74198|deltex 2 homolog (Drosophila)
mm9_v1_chr1_+_137914574_137914625	0.12581	AIRE.p2	NM_025439|Tmem9|66241|transmembrane protein 9	AK005248|Tmem9|66241|transmembrane protein 9	AK021225|Tmem9|66241|transmembrane protein 9	AK154423|Tmem9|66241|transmembrane protein 9	BC016524|Tmem9|66241|transmembrane protein 9	AK134909|Tmem9|66241|transmembrane protein 9	BC048017|Tmem9|66241|transmembrane protein 9	BC020291|Tmem9|66241|transmembrane protein 9
mm9_v1_chr6_-_148719426_148719561	0.124933	AIRE.p2	X67534|Ipo8|320727|importin 8
mm9_v1_chr9_-_117161564_117161606	0.124612	AIRE.p2	BC108402|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK052196|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK032938|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK081921|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK051776|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK041098|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172122|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172123|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172124|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172126|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_178660|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr13_-_12612537_12612714	0.124173	AIRE.p2	AK148351|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK041545|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AK042414|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	AF358671|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain	NM_133643|Edaradd|171211|EDAR (ectodysplasin-A receptor)-associated death domain
mm9_v1_chr1_-_170085798_170085873	0.124134	AIRE.p2	AK080184|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK032161|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK043495|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK085198|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr3_-_90237092_90237456	0.123843	AIRE.p2	BC055344|Ints3|229543|integrator complex subunit 3	AK033296|Ints3|229543|integrator complex subunit 3	AK146699|Ints3|229543|integrator complex subunit 3
mm9_v1_chr17_+_66472859_66472952	0.123606	AIRE.p2	BC079656|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	NM_001003919|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK076357|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK049419|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK152868|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)
mm9_v1_chr4_-_60594959_60595030	0.122468	AIRE.p2	EU882231|Mup10|100039008|major urinary protein 10	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	M28649|Mup1|17840|major urinary protein 1	NM_001122647|Mup10|100039008|major urinary protein 10
mm9_v1_chr7_-_52973262_52973371	0.122371	AIRE.p2	AK146414|Sphk2|56632|sphingosine kinase 2	AK151990|Sphk2|56632|sphingosine kinase 2	BC053737|Sphk2|56632|sphingosine kinase 2	AF245448|Sphk2|56632|sphingosine kinase 2	NM_001172561|Sphk2|56632|sphingosine kinase 2	NM_203280|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr15_-_103278889_103278900	0.121511	AIRE.p2	BC048502|BC048502|223927|cDNA sequence BC048502	NM_177631|BC048502|223927|cDNA sequence BC048502	AK131692|BC048502|223927|cDNA sequence BC048502
mm9_v1_chr9_+_110558996_110559065	0.120987	AIRE.p2	AK012610|Ccdc12|72654|coiled-coil domain containing 12	NM_028312|Ccdc12|72654|coiled-coil domain containing 12	BC026668|Ccdc12|72654|coiled-coil domain containing 12
mm9_v1_chr5_+_28168486_28168486	0.120926	AIRE.p2	NM_008314|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A
mm9_v1_chr5_-_110698882_110698900	0.119558	AIRE.p2	AK012159|Pgam5|72542|phosphoglycerate mutase family member 5	AK034588|Pgam5|72542|phosphoglycerate mutase family member 5	BC138924|Pgam5|72542|phosphoglycerate mutase family member 5	BC138925|Pgam5|72542|phosphoglycerate mutase family member 5	BC145467|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr17_+_71202075_71202104	0.118815	AIRE.p2	AK082636|C230073G13Rik|320430|RIKEN cDNA C230073G13 gene
mm9_v1_chr4_+_44313865_44313931	0.11831	AIRE.p2	AK167457|Melk|17279|maternal embryonic leucine zipper kinase	AK145316|Melk|17279|maternal embryonic leucine zipper kinase	AK208560|Melk|17279|maternal embryonic leucine zipper kinase
mm9_v1_chr8_-_75091078_75091201	0.118236	AIRE.p2	
mm9_v1_chr2_-_26207531_26207599	0.117723	AIRE.p2	BC031595|Dnlz|52838|DNL-type zinc finger	BC139334|Dnlz|52838|DNL-type zinc finger	BC139333|Dnlz|52838|DNL-type zinc finger
mm9_v1_chr11_-_53520811_53520848	0.117701	AIRE.p2	BC002033|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK018001|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK037641|Rad50|19360|RAD50 homolog (S. cerevisiae)	NM_009012|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr15_+_101042440_101042460	0.117544	AIRE.p2	AK078525|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr13_+_41096549_41096687	0.117359	AIRE.p2	AY030406|Pak1ip1|68083|PAK1 interacting protein 1	AK002852|Pak1ip1|68083|PAK1 interacting protein 1	BC024629|Pak1ip1|68083|PAK1 interacting protein 1	AK150747|Pak1ip1|68083|PAK1 interacting protein 1	AK150919|Pak1ip1|68083|PAK1 interacting protein 1	AK077941|Pak1ip1|68083|PAK1 interacting protein 1	AK135946|Pak1ip1|68083|PAK1 interacting protein 1	BC060371|Pak1ip1|68083|PAK1 interacting protein 1	BC018522|Pak1ip1|68083|PAK1 interacting protein 1	BC116729|Pak1ip1|68083|PAK1 interacting protein 1	BC116731|Pak1ip1|68083|PAK1 interacting protein 1
mm9_v1_chr6_+_40421405_40421491	0.116637	AIRE.p2	AK013425|Ssbp1|381760|single-stranded DNA binding protein 1	NM_028358|Ssbp1|381760|single-stranded DNA binding protein 1	NM_212468|Ssbp1|381760|single-stranded DNA binding protein 1	BC028648|Ssbp1|381760|single-stranded DNA binding protein 1	BC061183|Ssbp1|381760|single-stranded DNA binding protein 1	AK090242|Ssbp1|381760|single-stranded DNA binding protein 1	AK090272|Ssbp1|381760|single-stranded DNA binding protein 1	BC060290|Ssbp1|381760|single-stranded DNA binding protein 1	AK160556|Ssbp1|381760|single-stranded DNA binding protein 1
mm9_v1_chr8_-_112089492_112089538	0.11653	AIRE.p2	BC046557|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	NM_178380|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	AK017828|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	AK153917|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38
mm9_v1_chr13_-_40829082_40829191	0.11645	AIRE.p2	AB221578|Tcfap2a|21418|transcription factor AP-2, alpha	U17286|Tcfap2a|21418|transcription factor AP-2, alpha	AK145772|Tcfap2a|21418|transcription factor AP-2, alpha	X74216|Tcfap2a|21418|transcription factor AP-2, alpha	BC007471|Tcfap2a|21418|transcription factor AP-2, alpha	U17285|Tcfap2a|21418|transcription factor AP-2, alpha	NM_011547|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr10_-_80630518_80630667	0.116349	AIRE.p2	AK145367|Pias4|59004|protein inhibitor of activated STAT 4	AF109174|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr6_-_56319574_56319627	0.115901	AIRE.p2	AK077123|Pde1c|18575|phosphodiesterase 1C	AK015375|Pde1c|18575|phosphodiesterase 1C	AK014887|Pde1c|18575|phosphodiesterase 1C	AK133243|Pde1c|18575|phosphodiesterase 1C	AK029531|Pde1c|18575|phosphodiesterase 1C	NM_001159955|Pde1c|18575|phosphodiesterase 1C	NM_001159956|Pde1c|18575|phosphodiesterase 1C	NM_001159957|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr1_+_163899318_163899328	0.115384	AIRE.p2	AK016394|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	NM_001039045|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	NM_026078|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	AK152660|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C
mm9_v1_chr3_-_113277601_113277686	0.114716	AIRE.p2	AK029642|Amy1|11722|amylase 1, salivary	NM_007446|Amy1|11722|amylase 1, salivary	V00719|Amy1|11722|amylase 1, salivary
mm9_v1_chr14_+_35148567_35148593	0.114269	AIRE.p2	AK213533|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr13_+_60703261_60703571	0.11418	AIRE.p2	NM_029653|Dapk1|69635|death associated protein kinase 1	AY245540|Dapk1|69635|death associated protein kinase 1	AY245541|Dapk1|69635|death associated protein kinase 1	BC057317|Dapk1|69635|death associated protein kinase 1	BC060161|Dapk1|69635|death associated protein kinase 1	AK009701|Dapk1|69635|death associated protein kinase 1	AK145922|Dapk1|69635|death associated protein kinase 1	NM_134062|Dapk1|69635|death associated protein kinase 1
mm9_v1_chr17_+_35404109_35404141	0.113429	AIRE.p2	
mm9_v1_chr19_+_54003803_54003809	0.113263	AIRE.p2	AK050175|Pdcd4|18569|programmed cell death 4
mm9_v1_chr4_+_59202363_59202463	0.112853	AIRE.p2	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr9_+_62225584_62225601	0.112679	AIRE.p2	AK166489|Anp32a|11737|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm9_v1_chr17_-_74242984_74243003	0.112014	AIRE.p2	BC003997|Xdh|22436|xanthine dehydrogenase
mm9_v1_chr9_-_44152242_44152310	0.111303	AIRE.p2	AK153884|Hmbs|15288|hydroxymethylbilane synthase	BC003861|Hmbs|15288|hydroxymethylbilane synthase	AK167702|Hmbs|15288|hydroxymethylbilane synthase	AK151020|Hmbs|15288|hydroxymethylbilane synthase	NM_013551|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr1_-_165243608_165243611	0.111118	AIRE.p2	AK089006|Prrx1|18933|paired related homeobox 1
mm9_v1_chr8_+_97366546_97366639	0.110944	AIRE.p2	AK200178|Coq9|67914|coenzyme Q9 homolog (yeast)
mm9_v1_chr4_+_19502209_19502244	0.110086	AIRE.p2	NM_025476|Fam82b|66302|family with sequence similarity 82, member B	AK041199|Fam82b|66302|family with sequence similarity 82, member B	BC096046|Fam82b|66302|family with sequence similarity 82, member B
mm9_v1_chr3_-_130412360_130412367	0.109982	AIRE.p2	NM_025509|Ostc|66357|oligosaccharyltransferase complex subunit
mm9_v1_chr19_-_41289262_41289457	0.108978	AIRE.p2	AK008994|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK159802|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr19_+_56536126_56536129	0.108172	AIRE.p2	NM_001164263|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	NM_172641|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK036908|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK053921|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene
mm9_v1_chr17_+_8118823_8118919	0.107872	AIRE.p2	NM_145968|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC030886|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC039780|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC150728|Tagap|72536|T-cell activation Rho GTPase-activating protein
mm9_v1_chr16_+_33769005_33769131	0.107023	AIRE.p2	AK087096|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr1_-_44159187_44159306	0.106264	AIRE.p2	BC116881|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC119032|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	AK160565|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	NM_029368|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene	BC099557|1700029F09Rik|75623|RIKEN cDNA 1700029F09 gene
mm9_v1_chr17_-_65944300_65944335	0.105876	AIRE.p2	AK149040|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr8_+_109459623_109459679	0.105634	AIRE.p2	AK131687|Sntb2|20650|syntrophin, basic 2	AK040423|Sntb2|20650|syntrophin, basic 2	AK165009|Sntb2|20650|syntrophin, basic 2	NM_009229|Sntb2|20650|syntrophin, basic 2	BC138850|Sntb2|20650|syntrophin, basic 2	BC145442|Sntb2|20650|syntrophin, basic 2	U00678|Sntb2|20650|syntrophin, basic 2	AK080059|Sntb2|20650|syntrophin, basic 2	AK165900|Sntb2|20650|syntrophin, basic 2
mm9_v1_chr7_+_13483153_13483228	0.105105	AIRE.p2	AK052559|Zscan22|232878|zinc finger and SCAN domain containing 22	AK085207|Zscan22|232878|zinc finger and SCAN domain containing 22	NM_001001447|Zscan22|232878|zinc finger and SCAN domain containing 22	AK163694|Zscan22|232878|zinc finger and SCAN domain containing 22	AK078591|Zscan22|232878|zinc finger and SCAN domain containing 22	BC026676|Zscan22|232878|zinc finger and SCAN domain containing 22
mm9_v1_chr15_+_102044730_102044866	0.105089	AIRE.p2	AK004098|Zfp740|68744|zinc finger protein 740
mm9_v1_chr2_-_155649645_155649731	0.104621	AIRE.p2	AK212176|Eif6|16418|eukaryotic translation initiation factor 6	AK181580|Eif6|16418|eukaryotic translation initiation factor 6	AK177151|Eif6|16418|eukaryotic translation initiation factor 6	Y11460|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr1_+_157882793_157883024	0.104591	AIRE.p2	NM_172843|Tor1aip2|240832|torsin A interacting protein 2	AK150117|Tor1aip2|240832|torsin A interacting protein 2	NM_001160180|Tor1aip2|240832|torsin A interacting protein 2
mm9_v1_chr14_+_120724163_120724175	0.104244	AIRE.p2	BC075665|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr16_+_87354429_87354497	0.10205	AIRE.p2	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chr12_+_80130149_80130201	0.10144	AIRE.p2	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr17_-_13185014_13185022	0.101228	AIRE.p2	AK156334|Wtap|60532|Wilms' tumour 1-associating protein
mm9_v1_chr6_-_56654667_56654692	0.100779	AIRE.p2	BC048459|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK008480|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK011218|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC061085|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK009617|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132626|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132628|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_025520|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr19_+_12708001_12708022	0.10067	AIRE.p2	AK143803|Glyat|107146|glycine-N-acyltransferase	AK143901|Glyat|107146|glycine-N-acyltransferase	BC010799|Glyat|107146|glycine-N-acyltransferase	BC015294|Glyat|107146|glycine-N-acyltransferase
mm9_v1_chr17_-_26206487_26206493	0.100488	AIRE.p2	AK163013|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)
mm9_v1_chr1_+_82721477_82721553	0.0994374	AIRE.p2	BC059229|Mff|75734|mitochondrial fission factor	NM_029409|Mff|75734|mitochondrial fission factor	AK017226|Mff|75734|mitochondrial fission factor	AK083056|Mff|75734|mitochondrial fission factor	AK139649|Mff|75734|mitochondrial fission factor
mm9_v1_chr8_+_75247189_75247206	0.0994194	AIRE.p2	AK165592|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC021160|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC129859|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	L38622|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC096367|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AF038848|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC020049|Sin3b|20467|transcriptional regulator, SIN3B (yeast)
mm9_v1_chr6_+_56664919_56664961	0.0992211	AIRE.p2	AK122228|Avl9|78937|AVL9 homolog (S. cerevisiase)	AK020003|Avl9|78937|AVL9 homolog (S. cerevisiase)	BC051177|Avl9|78937|AVL9 homolog (S. cerevisiase)	BC117878|Avl9|78937|AVL9 homolog (S. cerevisiase)	BC117879|Avl9|78937|AVL9 homolog (S. cerevisiase)	AK083605|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr4_-_77857753_77857864	0.0987406	AIRE.p2	AK083789|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AK045658|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AK034145|Ptprd|19266|protein tyrosine phosphatase, receptor type, D	AK080973|Ptprd|19266|protein tyrosine phosphatase, receptor type, D
mm9_v1_chr18_-_38498564_38498663	0.0984587	AIRE.p2	BC014800|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK084247|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF160355|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK080610|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AK166069|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	AF088903|Gnpda1|26384|glucosamine-6-phosphate deaminase 1	NM_011937|Gnpda1|26384|glucosamine-6-phosphate deaminase 1
mm9_v1_chr7_-_129245303_129245368	0.0973742	AIRE.p2	AK167447|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK089103|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC092379|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC060951|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018717|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK008788|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK009698|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK010307|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK011302|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018688|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK151719|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK152995|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	NM_028177|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr18_+_24629351_24629462	0.0971809	AIRE.p2	AK012467|2700062C07Rik|68046|RIKEN cDNA 2700062C07 gene	BC084681|2700062C07Rik|68046|RIKEN cDNA 2700062C07 gene	AK011228|2700062C07Rik|68046|RIKEN cDNA 2700062C07 gene	BC029246|2700062C07Rik|68046|RIKEN cDNA 2700062C07 gene	AK018391|2700062C07Rik|68046|RIKEN cDNA 2700062C07 gene	NM_026529|2700062C07Rik|68046|RIKEN cDNA 2700062C07 gene	AK013030|2700062C07Rik|68046|RIKEN cDNA 2700062C07 gene
mm9_v1_chr18_+_53405363_53405427	0.0967326	AIRE.p2	AK012711|Snx24|69226|sorting nexing 24	AK017610|Snx24|69226|sorting nexing 24
mm9_v1_chr1_-_175671849_175671956	0.0962537	AIRE.p2	BC150711|AI607873|226691|expressed sequence AI607873	AK054438|AI607873|226691|expressed sequence AI607873
mm9_v1_chr2_+_84667196_84667249	0.0952785	AIRE.p2	AF150090|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	BC031448|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)	AK013546|Timm10|30059|translocase of inner mitochondrial membrane 10 homolog (yeast)
mm9_v1_chr9_-_53012444_53012529	0.0949528	AIRE.p2	AK166787|Ddx10|77591|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm9_v1_chr15_+_99543952_99544029	0.0948193	AIRE.p2	AK190322|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr19_+_5493612_5493771	0.0946452	AIRE.p2	AK195534|Cfl1|12631|cofilin 1, non-muscle	AK198064|Cfl1|12631|cofilin 1, non-muscle	AK200194|Cfl1|12631|cofilin 1, non-muscle	AK208902|Cfl1|12631|cofilin 1, non-muscle	AK215762|Cfl1|12631|cofilin 1, non-muscle
mm9_v1_chr8_+_109127326_109127398	0.0945939	AIRE.p2	X06115|Cdh1|12550|cadherin 1
mm9_v1_chr6_+_106719113_106719221	0.0937566	AIRE.p2	AK135791|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK010662|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AB063106|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK152739|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	BC031764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	NM_027296|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK011764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK166804|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK139764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1
mm9_v1_chr6_+_116288396_116288456	0.0916482	AIRE.p2	AK005032|March8|71779|membrane-associated ring finger (C3HC4) 8	AK182250|March8|71779|membrane-associated ring finger (C3HC4) 8	AK189694|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr15_+_97998090_97998244	0.0916468	AIRE.p2	AK080988|AI836003|239650|expressed sequence AI836003	NM_177716|AI836003|239650|expressed sequence AI836003
mm9_v1_chr2_-_121299743_121299792	0.0915565	AIRE.p2	AK011317|Mfap1b|100034361|microfibrillar-associated protein 1B	AK018514|Mfap1b|100034361|microfibrillar-associated protein 1B	NM_001081975|Mfap1b|100034361|microfibrillar-associated protein 1B	AK169029|Mfap1b|100034361|microfibrillar-associated protein 1B	AK088946|Mfap1b|100034361|microfibrillar-associated protein 1B
mm9_v1_chr5_+_31357119_31357185	0.0912956	AIRE.p2	BC053097|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	NM_023525|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC060119|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr1_+_123327668_123327740	0.0905344	AIRE.p2	AK014621|Ccdc93|70829|coiled-coil domain containing 93	AK159415|Ccdc93|70829|coiled-coil domain containing 93	AK052300|Ccdc93|70829|coiled-coil domain containing 93	AK020306|Ccdc93|70829|coiled-coil domain containing 93	AK085701|Ccdc93|70829|coiled-coil domain containing 93	BC054083|Ccdc93|70829|coiled-coil domain containing 93
mm9_v1_chr8_+_74474946_74475007	0.0889339	AIRE.p2	AK158413|Zfp961|234413|zinc finger protein 961	NM_001164581|Zfp961|234413|zinc finger protein 961	BC065788|Zfp961|234413|zinc finger protein 961	AK020714|Zfp961|234413|zinc finger protein 961	BC049349|Zfp961|234413|zinc finger protein 961
mm9_v1_chrX_+_34335647_34335650	0.0887993	AIRE.p2	AK012751|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK002283|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK017881|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK088730|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	X70847|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr5_-_130175960_130176006	0.0882148	AIRE.p2	BC058553|Zfp11|22648|zinc finger protein 11	NM_172462|Zfp11|22648|zinc finger protein 11	AK032872|Zfp11|22648|zinc finger protein 11
mm9_v1_chr8_-_27056759_27056953	0.0881529	AIRE.p2	BC019450|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK189846|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK020410|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase
mm9_v1_chr11_+_66838648_66838688	0.0874418	AIRE.p2	AK043094|Tmem220|338369|transmembrane protein 220	BC110628|Tmem220|338369|transmembrane protein 220	BC110629|Tmem220|338369|transmembrane protein 220	NM_177392|Tmem220|338369|transmembrane protein 220	AK078505|Tmem220|338369|transmembrane protein 220
mm9_v1_chr11_-_86517662_86517713	0.0871887	AIRE.p2	AK167527|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr11_-_69495203_69495445	0.087163	AIRE.p2	AY008764|Senp3|80886|SUMO/sentrin specific peptidase 3	BC037014|Senp3|80886|SUMO/sentrin specific peptidase 3	AK045071|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chr10_+_115254308_115254566	0.0869392	AIRE.p2	AK087696|Tspan8|216350|tetraspanin 8	AK077301|Tspan8|216350|tetraspanin 8	BC027777|Tspan8|216350|tetraspanin 8	BC029808|Tspan8|216350|tetraspanin 8	NM_001168679|Tspan8|216350|tetraspanin 8	NM_001168680|Tspan8|216350|tetraspanin 8	NM_146010|Tspan8|216350|tetraspanin 8	BC029068|Tspan8|216350|tetraspanin 8	BC025461|Tspan8|216350|tetraspanin 8	BC034198|Tspan8|216350|tetraspanin 8
mm9_v1_chr10_+_4978128_4978288	0.0859381	AIRE.p2	AK032502|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr9_-_7176964_7177059	0.0843517	AIRE.p2	BC088991|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK045978|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK084796|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK032860|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	AK046538|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	DQ104402|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1	NM_029851|Dync2h1|110350|dynein cytoplasmic 2 heavy chain 1
mm9_v1_chr12_+_84861415_84861438	0.0836715	AIRE.p2	NM_030246|Dcaf4|73828|DDB1 and CUL4 associated factor 4
mm9_v1_chr2_-_77357674_77357722	0.083459	AIRE.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr19_+_10525829_10525836	0.0830316	AIRE.p2	
mm9_v1_chr4_+_150302107_150302108	0.0817741	AIRE.p2	NM_001077509|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9	AK154625|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9
mm9_v1_chr2_-_66473008_66473018	0.081219	AIRE.p2	NM_018852|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	AK141871|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha
mm9_v1_chr9_-_16182674_16182674	0.0810581	AIRE.p2	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr19_-_16342088_16342126	0.0806896	AIRE.p2	
mm9_v1_chr11_+_110260435_110260577	0.0805	AIRE.p2	AK043482|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK086722|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK138757|Map2k6|26399|mitogen-activated protein kinase kinase 6	NM_011943|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK077712|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK140289|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK141708|Map2k6|26399|mitogen-activated protein kinase kinase 6	BC075652|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK162671|Map2k6|26399|mitogen-activated protein kinase kinase 6	X97052|Map2k6|26399|mitogen-activated protein kinase kinase 6
mm9_v1_chr17_-_32351597_32351614	0.0796976	AIRE.p2	
mm9_v1_chr9_+_108957402_108957503	0.0795929	AIRE.p2	AK081060|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK020877|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK018291|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	NM_026381|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	BC057089|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	BC017600|Shisa5|66940|shisa homolog 5 (Xenopus laevis)
mm9_v1_chr11_+_70658310_70658476	0.0784987	AIRE.p2	AK205489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AB001750|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	D86066|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129853|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129854|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248490|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr13_-_115078961_115078988	0.0784804	AIRE.p2	AK035175|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr8_+_74134884_74135109	0.0779007	AIRE.p2	BC032165|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK036165|Glt25d1|234407|glycosyltransferase 25 domain containing 1	NM_146211|Glt25d1|234407|glycosyltransferase 25 domain containing 1	BC056951|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK035788|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK076103|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK029433|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK154775|Glt25d1|234407|glycosyltransferase 25 domain containing 1
mm9_v1_chr4_+_98590565_98590631	0.077333	AIRE.p2	BC018179|Usp1|230484|ubiquitin specific peptidase 1
mm9_v1_chr8_+_74675802_74675827	0.0771993	AIRE.p2	
mm9_v1_chr10_+_127759640_127759648	0.0764098	AIRE.p2	AK013014|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK019927|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr5_+_30969259_30969346	0.0762575	AIRE.p2	AF012709|Cenpa|12615|centromere protein A	NM_007681|Cenpa|12615|centromere protein A	AK040313|Cenpa|12615|centromere protein A	AK041138|Cenpa|12615|centromere protein A	AK089033|Cenpa|12615|centromere protein A	AK053763|Cenpa|12615|centromere protein A	AK010718|Cenpa|12615|centromere protein A	BC011038|Cenpa|12615|centromere protein A	AK011399|Cenpa|12615|centromere protein A	BC012280|Cenpa|12615|centromere protein A
mm9_v1_chr17_-_3082572_3082713	0.0761904	AIRE.p2	
mm9_v1_chr5_-_125870386_125870439	0.0757622	AIRE.p2	NM_019639|Ubc|22190|ubiquitin C	AK004727|Ubc|22190|ubiquitin C
mm9_v1_chr8_-_98412302_98412339	0.0757285	AIRE.p2	BC089341|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK147953|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial
mm9_v1_chr1_-_164796660_164796743	0.0753617	AIRE.p2	BC011229|Fmo1|14261|flavin containing monooxygenase 1	NM_010231|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr10_-_36858426_36858478	0.0745594	AIRE.p2	
mm9_v1_chr9_+_120019521_120019545	0.0744721	AIRE.p2	AK167737|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr17_+_56752805_56752873	0.072731	AIRE.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chr5_+_38651466_38651637	0.0726226	AIRE.p2	BC025197|Tmem128|66309|transmembrane protein 128	AK012789|Tmem128|66309|transmembrane protein 128	AK013227|Tmem128|66309|transmembrane protein 128	AK080853|Tmem128|66309|transmembrane protein 128	NM_025480|Tmem128|66309|transmembrane protein 128	AK162257|Tmem128|66309|transmembrane protein 128	AK076679|Tmem128|66309|transmembrane protein 128	BC060969|Tmem128|66309|transmembrane protein 128	BC110310|Tmem128|66309|transmembrane protein 128
mm9_v1_chr10_+_89207730_89207982	0.0725864	AIRE.p2	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr12_+_80309899_80309933	0.0725379	AIRE.p2	AK164157|Rdh12|77974|retinol dehydrogenase 12	AK039233|Rdh12|77974|retinol dehydrogenase 12	NM_030017|Rdh12|77974|retinol dehydrogenase 12	AK020927|Rdh12|77974|retinol dehydrogenase 12	BC016204|Rdh12|77974|retinol dehydrogenase 12	BC067213|Rdh12|77974|retinol dehydrogenase 12
mm9_v1_chr11_+_83164638_83164673	0.0724237	AIRE.p2	
mm9_v1_chrX_+_103211038_103211115	0.0723111	AIRE.p2	BC089538|Cox7b|66142|cytochrome c oxidase subunit VIIb	NM_025379|Cox7b|66142|cytochrome c oxidase subunit VIIb	AK132086|Cox7b|66142|cytochrome c oxidase subunit VIIb	AK003414|Cox7b|66142|cytochrome c oxidase subunit VIIb	AK002593|Cox7b|66142|cytochrome c oxidase subunit VIIb	BC024350|Cox7b|66142|cytochrome c oxidase subunit VIIb
mm9_v1_chr5_+_112755377_112755459	0.0718846	AIRE.p2	AK148182|Tfip11|54723|tuftelin interacting protein 11	AK161154|Tfip11|54723|tuftelin interacting protein 11	AF290474|Tfip11|54723|tuftelin interacting protein 11	NM_018783|Tfip11|54723|tuftelin interacting protein 11	AK147973|Tfip11|54723|tuftelin interacting protein 11	AK164414|Tfip11|54723|tuftelin interacting protein 11	BC017682|Tfip11|54723|tuftelin interacting protein 11	AK148260|Tfip11|54723|tuftelin interacting protein 11
mm9_v1_chr9_+_82723591_82723695	0.0714563	AIRE.p2	AK076594|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK013036|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK045436|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	BC046301|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	BC061099|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AF093135|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK014712|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1	AK020448|Irak1bp1|65099|interleukin-1 receptor-associated kinase 1 binding protein 1
mm9_v1_chr4_-_132019760_132019840	0.0714163	AIRE.p2	BC068306|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012903|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012886|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	NM_026039|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK159696|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
mm9_v1_chr7_-_93924317_93924373	0.0712085	AIRE.p2	BC119604|Folh1|53320|folate hydrolase	BC119605|Folh1|53320|folate hydrolase	AK002920|Folh1|53320|folate hydrolase	AF026380|Folh1|53320|folate hydrolase	AK090289|Folh1|53320|folate hydrolase	NM_001159706|Folh1|53320|folate hydrolase	NM_016770|Folh1|53320|folate hydrolase
mm9_v1_chr6_-_28399248_28399339	0.0711659	AIRE.p2	BC131908|Pax4|18506|paired box gene 4	BC131906|Pax4|18506|paired box gene 4	BC145168|Pax4|18506|paired box gene 4	BC145169|Pax4|18506|paired box gene 4	AB010557|Pax4|18506|paired box gene 4	AF145233|Pax4|18506|paired box gene 4	AB010558|Pax4|18506|paired box gene 4	AB008912|Pax4|18506|paired box gene 4	NM_001159925|Pax4|18506|paired box gene 4	NM_001159926|Pax4|18506|paired box gene 4	NM_011038|Pax4|18506|paired box gene 4
mm9_v1_chr8_-_113365126_113365129	0.0709202	AIRE.p2	AK214493|Sf3b3|101943|splicing factor 3b, subunit 3	AK209569|Sf3b3|101943|splicing factor 3b, subunit 3
mm9_v1_chr7_-_20093663_20093722	0.0704719	AIRE.p2	BC043666|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	NM_177692|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK054006|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK153811|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3
mm9_v1_chr15_-_36070139_36070154	0.0703079	AIRE.p2	AK158239|Rgs22|626596|regulator of G-protein signalling 22	NM_001195748|Rgs22|626596|regulator of G-protein signalling 22
mm9_v1_chr1_-_137001804_137001852	0.0698508	AIRE.p2	BC141210|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	AK085901|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	AK137380|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6	NM_001033409|Lgr6|329252|leucine-rich repeat-containing G protein-coupled receptor 6
mm9_v1_chr5_+_130231003_130231023	0.0696615	AIRE.p2	AK170336|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr13_-_48608795_48608824	0.0694014	AIRE.p2	AK162962|Zfp169|67911|zinc finger protein 169	AK086737|Zfp169|67911|zinc finger protein 169	NM_001164576|Zfp169|67911|zinc finger protein 169	NM_026450|Zfp169|67911|zinc finger protein 169
mm9_v1_chr7_+_27220131_27220231	0.069049	AIRE.p2	AK087843|Nlrp4a|243880|NLR family, pyrin domain containing 4A	AY355341|Nlrp4a|243880|NLR family, pyrin domain containing 4A	NM_172896|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141342|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141343|Nlrp4a|243880|NLR family, pyrin domain containing 4A
mm9_v1_chr3_+_51299153_51299205	0.0688206	AIRE.p2	
mm9_v1_chr4_+_155484072_155484109	0.0685603	AIRE.p2	AK029276|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	BC004010|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	NM_145557|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	NM_177205|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene	AK034620|9430015G10Rik|230996|RIKEN cDNA 9430015G10 gene
mm9_v1_chr1_+_97230610_97230736	0.068116	AIRE.p2	AK152164|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chr4_+_134483092_134483164	0.0675568	AIRE.p2	
mm9_v1_chr4_-_134108044_134108129	0.0667709	AIRE.p2	NM_029100|Sepn1|74777|selenoprotein N, 1
mm9_v1_chr9_+_3404047_3404117	0.0667691	AIRE.p2	BC125483|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC125485|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK083386|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK045423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	NM_027545|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK014327|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	AK031423|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC100536|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC051218|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)	BC043480|Cwf19l2|244672|CWF19-like 2, cell cycle control (S. pombe)
mm9_v1_chr2_-_89892475_89892478	0.0662693	AIRE.p2	BC111111|Olfr140|57272|olfactory receptor 140	BC141888|Olfr140|57272|olfactory receptor 140	NM_020515|Olfr140|57272|olfactory receptor 140
mm9_v1_chr7_-_67285104_67285104	0.0660282	AIRE.p2	NM_001082962|Snrpn|20646|small nuclear ribonucleoprotein N
mm9_v1_chr6_-_122692754_122692762	0.0657255	AIRE.p2	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr10_-_9620323_9620480	0.0653217	AIRE.p2	AF516608|Stxbp5|78808|syntaxin binding protein 5 (tomosyn)
mm9_v1_chr5_-_37087261_37087293	0.0650108	AIRE.p2	AK037038|D5Ertd579e|320661|DNA segment, Chr 5, ERATO Doi 579, expressed
mm9_v1_chrX_-_41721513_41721518	0.0645712	AIRE.p2	AK037333|Dcaf12l2|245403|DDB1 and CUL4 associated factor 12-like 2	NM_175539|Dcaf12l2|245403|DDB1 and CUL4 associated factor 12-like 2	AK076436|Dcaf12l2|245403|DDB1 and CUL4 associated factor 12-like 2
mm9_v1_chr16_-_4624877_4625001	0.0642047	AIRE.p2	AB073618|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	BC024346|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	BC096419|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AF349454|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AK003227|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AK008380|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	NM_025571|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
mm9_v1_chr4_-_132288428_132288460	0.063977	AIRE.p2	AK029920|Xkr8|381560|X Kell blood group precursor related family member 8 homolog	AY534254|Xkr8|381560|X Kell blood group precursor related family member 8 homolog	NM_201368|Xkr8|381560|X Kell blood group precursor related family member 8 homolog
mm9_v1_chr4_+_141000576_141000628	0.0639171	AIRE.p2	NM_009541|Zbtb17|22642|zinc finger and BTB domain containing 17	U14556|Zbtb17|22642|zinc finger and BTB domain containing 17	AK051971|Zbtb17|22642|zinc finger and BTB domain containing 17	U22396|Zbtb17|22642|zinc finger and BTB domain containing 17	BC060055|Zbtb17|22642|zinc finger and BTB domain containing 17	AK134251|Zbtb17|22642|zinc finger and BTB domain containing 17
mm9_v1_chr2_-_35973217_35973333	0.0635626	AIRE.p2	
mm9_v1_chrM_+_14143_14189	0.0630393	AIRE.p2	
mm9_v1_chr9_+_20104572_20104654	0.0618589	AIRE.p2	BC139140|Olfr873|258554|olfactory receptor 873	NM_146561|Olfr873|258554|olfactory receptor 873
mm9_v1_chr10_-_122633922_122634056	0.0618554	AIRE.p2	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr10_+_73284612_73284690	0.0600013	AIRE.p2	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chr19_+_46227039_46227050	0.0595472	AIRE.p2	BC076569|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1	NM_178930|Gbf1|107338|golgi-specific brefeldin A-resistance factor 1
mm9_v1_chr19_-_7180162_7180222	0.0592867	AIRE.p2	AY495668|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	AK031503|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	NM_201411|Flrt1|396184|fibronectin leucine rich transmembrane protein 1	BC070403|Flrt1|396184|fibronectin leucine rich transmembrane protein 1
mm9_v1_chr10_+_127759512_127759609	0.0590407	AIRE.p2	AF186115|Cnpy2|56530|canopy 2 homolog (zebrafish)	NM_019953|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK150953|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr1_-_4350323_4350394	0.0588216	AIRE.p2	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr8_+_106774774_106774855	0.0586709	AIRE.p2	AK005577|Cklf|75458|chemokine-like factor	AY046597|Cklf|75458|chemokine-like factor	NM_029295|Cklf|75458|chemokine-like factor	AK046397|Cklf|75458|chemokine-like factor	AK086063|Cklf|75458|chemokine-like factor	AK032759|Cklf|75458|chemokine-like factor	AK050112|Cklf|75458|chemokine-like factor	NM_001037841|Cklf|75458|chemokine-like factor	BC027684|Cklf|75458|chemokine-like factor	AF401530|Cklf|75458|chemokine-like factor	AF401531|Cklf|75458|chemokine-like factor	AY047360|Cklf|75458|chemokine-like factor
mm9_v1_chr13_+_67295437_67295470	0.05864	AIRE.p2	NM_001048204|Zfp455|218311|zinc finger protein 455	AK028336|Zfp455|218311|zinc finger protein 455
mm9_v1_chr13_-_58494637_58494692	0.0583264	AIRE.p2	AK207611|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K
mm9_v1_chr6_-_72310580_72310656	0.0574028	AIRE.p2	AK195168|Rnf181|66510|ring finger protein 181	AK202921|Rnf181|66510|ring finger protein 181	AK209718|Rnf181|66510|ring finger protein 181	AK211264|Rnf181|66510|ring finger protein 181	AK211423|Rnf181|66510|ring finger protein 181	AK213249|Rnf181|66510|ring finger protein 181
mm9_v1_chr11_-_50244605_50244617	0.0572904	AIRE.p2	AK046633|Rufy1|216724|RUN and FYVE domain containing 1	NM_172557|Rufy1|216724|RUN and FYVE domain containing 1	AK051178|Rufy1|216724|RUN and FYVE domain containing 1
mm9_v1_chr2_-_29643157_29643203	0.0571801	AIRE.p2	BC024075|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK167294|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	BC015285|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050583|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK087102|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK050587|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK081579|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	AK043949|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)	NM_145520|Trub2|227682|TruB pseudouridine (psi) synthase homolog 2 (E. coli)
mm9_v1_chr8_+_34807688_34807718	0.0569837	AIRE.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr5_-_86539474_86539529	0.0566908	AIRE.p2	AK017687|Uba6|231380|ubiquitin-like modifier activating enzyme 6
mm9_v1_chr15_+_80782753_80782915	0.0565961	AIRE.p2	AK201011|Adsl|11564|adenylosuccinate lyase
mm9_v1_chr15_+_12808445_12808493	0.0563098	AIRE.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr19_-_12841737_12842025	0.055326	AIRE.p2	AK018620|Zfp91|109910|zinc finger protein 91	AK012081|Zfp91|109910|zinc finger protein 91
mm9_v1_chr10_+_81816989_81817008	0.0550377	AIRE.p2	DQ459435|Gm4924|237412|predicted gene 4924
mm9_v1_chr7_-_125629996_125630002	0.054722	AIRE.p2	AK164927|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK081844|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chrX_-_17149313_17149460	0.0542266	AIRE.p2	BC012515|Fundc1|72018|FUN14 domain containing 1	AK168868|Fundc1|72018|FUN14 domain containing 1	BC030487|Fundc1|72018|FUN14 domain containing 1	AK005163|Fundc1|72018|FUN14 domain containing 1	NM_028058|Fundc1|72018|FUN14 domain containing 1
mm9_v1_chr6_+_145882641_145882808	0.0541091	AIRE.p2	AK162864|Sspn|16651|sarcospan	AK163041|Sspn|16651|sarcospan	AK164430|Sspn|16651|sarcospan	BC021484|Sspn|16651|sarcospan	NM_010656|Sspn|16651|sarcospan	U02487|Sspn|16651|sarcospan	AK148179|Sspn|16651|sarcospan	AK164529|Sspn|16651|sarcospan
mm9_v1_chr17_-_35268696_35268782	0.0540196	AIRE.p2	AF207820|Apom|55938|apolipoprotein M	NM_018816|Apom|55938|apolipoprotein M	BC021597|Apom|55938|apolipoprotein M	AK004530|Apom|55938|apolipoprotein M
mm9_v1_chr4_+_98393438_98393452	0.0538622	AIRE.p2	AB211064|L1td1|381591|LINE-1 type transposase domain containing 1	NM_001081202|L1td1|381591|LINE-1 type transposase domain containing 1	AK145814|L1td1|381591|LINE-1 type transposase domain containing 1
mm9_v1_chr5_-_114292548_114292630	0.0536237	AIRE.p2	
mm9_v1_chr7_-_140179678_140180024	0.0530927	AIRE.p2	AK187460|Ctbp2|13017|C-terminal binding protein 2	AK161077|Ctbp2|13017|C-terminal binding protein 2	AK198744|Ctbp2|13017|C-terminal binding protein 2	AK199198|Ctbp2|13017|C-terminal binding protein 2	AK201071|Ctbp2|13017|C-terminal binding protein 2	AK217772|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr16_+_91465283_91465348	0.0530797	AIRE.p2	AK162627|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene	AK038602|A930006K02Rik|78433|RIKEN cDNA A930006K02 gene
mm9_v1_chr2_+_122060526_122060603	0.0525542	AIRE.p2	AK152169|Sord|20322|sorbitol dehydrogenase	AK166996|Sord|20322|sorbitol dehydrogenase	AK004692|Sord|20322|sorbitol dehydrogenase	BC024124|Sord|20322|sorbitol dehydrogenase	BC092291|Sord|20322|sorbitol dehydrogenase	AK015059|Sord|20322|sorbitol dehydrogenase	NM_146126|Sord|20322|sorbitol dehydrogenase	AK166988|Sord|20322|sorbitol dehydrogenase	U27014|Sord|20322|sorbitol dehydrogenase	BC039957|Sord|20322|sorbitol dehydrogenase	BC030875|Sord|20322|sorbitol dehydrogenase
mm9_v1_chr5_-_141178229_141178331	0.0522981	AIRE.p2	AK029333|Iqce|74239|IQ motif containing E	BC059223|Iqce|74239|IQ motif containing E	NM_028833|Iqce|74239|IQ motif containing E
mm9_v1_chr2_-_35316760_35317051	0.0511927	AIRE.p2	BC006810|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK088605|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M26925|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M85153|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AF297615|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_001145821|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_010283|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK004753|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK159087|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3
mm9_v1_chr10_-_30338265_30338290	0.0507711	AIRE.p2	AK002482|Hint3|66847|histidine triad nucleotide binding protein 3
mm9_v1_chr17_+_26793311_26793343	0.0504313	AIRE.p2	
mm9_v1_chr7_+_30023368_30023534	0.0502455	AIRE.p2	AK020444|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr6_+_87859720_87859763	0.0493093	AIRE.p2	AK192006|Copg|54161|coatomer protein complex, subunit gamma	AK196464|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr15_-_99650502_99650572	0.0491356	AIRE.p2	AF307844|Lima1|65970|LIM domain and actin binding 1	AK028186|Lima1|65970|LIM domain and actin binding 1	AK031698|Lima1|65970|LIM domain and actin binding 1	AK132314|Lima1|65970|LIM domain and actin binding 1	AK085065|Lima1|65970|LIM domain and actin binding 1	NM_023063|Lima1|65970|LIM domain and actin binding 1
mm9_v1_chr8_-_25686797_25686823	0.0485515	AIRE.p2	BC026393|Ido2|209176|indoleamine 2,3-dioxygenase 2	EF137182|Ido2|209176|indoleamine 2,3-dioxygenase 2	NM_145949|Ido2|209176|indoleamine 2,3-dioxygenase 2
mm9_v1_chr10_+_79422870_79422988	0.0484095	AIRE.p2	AK087505|Wdr18|216156|WD repeat domain 18	AK133716|Wdr18|216156|WD repeat domain 18	BC095984|Wdr18|216156|WD repeat domain 18	NM_175450|Wdr18|216156|WD repeat domain 18	AK032251|Wdr18|216156|WD repeat domain 18	AK050106|Wdr18|216156|WD repeat domain 18	AK160713|Wdr18|216156|WD repeat domain 18	AK163465|Wdr18|216156|WD repeat domain 18	AK166113|Wdr18|216156|WD repeat domain 18	AK168691|Wdr18|216156|WD repeat domain 18	AK082695|Wdr18|216156|WD repeat domain 18
mm9_v1_chr7_+_51052946_51053024	0.0482405	AIRE.p2	D30785|Klk8|259277|kallikrein related-peptidase 8	NM_008940|Klk8|259277|kallikrein related-peptidase 8
mm9_v1_chr2_+_30219752_30219824	0.0480507	AIRE.p2	AK165996|Fam73b|108958|family with sequence similarity 73, member B	AK154200|Fam73b|108958|family with sequence similarity 73, member B	AK140122|Fam73b|108958|family with sequence similarity 73, member B	AK040713|Fam73b|108958|family with sequence similarity 73, member B	AK077618|Fam73b|108958|family with sequence similarity 73, member B
mm9_v1_chr2_-_158054870_158054968	0.0478607	AIRE.p2	BC137959|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	BC137960|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	AK052605|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	NM_001131021|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	NM_177657|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	AK168367|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene
mm9_v1_chr2_-_105843271_105843398	0.0476293	AIRE.p2	BC091774|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24	AY028460|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24
mm9_v1_chr19_+_41904459_41904605	0.0473432	AIRE.p2	NM_008043|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	AK015680|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	BC140987|Frat1|14296|frequently rearranged in advanced T-cell lymphomas	U58974|Frat1|14296|frequently rearranged in advanced T-cell lymphomas
mm9_v1_chr9_+_113885162_113885169	0.0473259	AIRE.p2	AK087783|Ubp1|22221|upstream binding protein 1
mm9_v1_chr4_+_128820458_128820467	0.0469551	AIRE.p2	AK137327|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr11_-_73137838_73138062	0.0469121	AIRE.p2	AK035910|Aspa|11484|aspartoacylase	AF212998|Aspa|11484|aspartoacylase
mm9_v1_chr5_+_88254710_88254721	0.0465106	AIRE.p2	BC049645|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	BC103787|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	AK015291|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	NM_001163551|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene	NM_028648|4930432K09Rik|73779|RIKEN cDNA 4930432K09 gene
mm9_v1_chr6_+_38542722_38542769	0.0462033	AIRE.p2	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr5_+_90919758_90919765	0.0460461	AIRE.p2	AK075972|Afp|11576|alpha fetoprotein	AK076197|Afp|11576|alpha fetoprotein	AK146513|Afp|11576|alpha fetoprotein	AK146524|Afp|11576|alpha fetoprotein	AK168426|Afp|11576|alpha fetoprotein	AK168574|Afp|11576|alpha fetoprotein	AK168751|Afp|11576|alpha fetoprotein	AK169046|Afp|11576|alpha fetoprotein	AK169054|Afp|11576|alpha fetoprotein	AK010934|Afp|11576|alpha fetoprotein	AK076053|Afp|11576|alpha fetoprotein	AK145975|Afp|11576|alpha fetoprotein	AK168576|Afp|11576|alpha fetoprotein	AK168883|Afp|11576|alpha fetoprotein	AK169147|Afp|11576|alpha fetoprotein	AK167549|Afp|11576|alpha fetoprotein	V00743|Afp|11576|alpha fetoprotein
mm9_v1_chr9_-_106378454_106378490	0.0457236	AIRE.p2	BC058754|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr9_+_120019498_120019516	0.0456838	AIRE.p2	AK078385|Slc25a38|208638|solute carrier family 25, member 38	BC010801|Slc25a38|208638|solute carrier family 25, member 38	NM_144793|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr2_+_155062268_155062350	0.0441114	AIRE.p2	NM_025947|Dynlrb1|67068|dynein light chain roadblock-type 1	AK166685|Dynlrb1|67068|dynein light chain roadblock-type 1	BC099423|Dynlrb1|67068|dynein light chain roadblock-type 1	AK008595|Dynlrb1|67068|dynein light chain roadblock-type 1	BC125610|Dynlrb1|67068|dynein light chain roadblock-type 1	BC125648|Dynlrb1|67068|dynein light chain roadblock-type 1	AK002359|Dynlrb1|67068|dynein light chain roadblock-type 1	AK003435|Dynlrb1|67068|dynein light chain roadblock-type 1
mm9_v1_chr14_-_61664997_61665146	0.0436358	AIRE.p2	AK028146|Tnfrsf19|29820|tumor necrosis factor receptor superfamily, member 19	AF167554|Tnfrsf19|29820|tumor necrosis factor receptor superfamily, member 19
mm9_v1_chr17_+_21560190_21560333	0.0414152	AIRE.p2	BC080782|Zfp54|22712|zinc finger protein 54	NM_011760|Zfp54|22712|zinc finger protein 54	AK148292|Zfp54|22712|zinc finger protein 54	AF080070|Zfp54|22712|zinc finger protein 54	AK012854|Zfp54|22712|zinc finger protein 54
mm9_v1_chr7_+_31993360_31993375	0.0413326	AIRE.p2	
mm9_v1_chr13_-_48608762_48608790	0.0408476	AIRE.p2	BC060222|Zfp169|67911|zinc finger protein 169	NM_001164575|Zfp169|67911|zinc finger protein 169
mm9_v1_chr3_-_89832276_89832298	0.0404626	AIRE.p2	AK082804|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr3_+_88390817_88390831	0.0403782	AIRE.p2	AK217251|Ssr2|66256|signal sequence receptor, beta
mm9_v1_chr1_-_154233721_154233811	0.0399072	AIRE.p2	AK169429|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	BC024342|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	AK004261|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	AK053666|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	AK011608|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	BC145701|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	AK017650|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)	NM_025677|Tsen15|66637|tRNA splicing endonuclease 15 homolog (S. cerevisiae)
mm9_v1_chr2_-_169956719_169956719	0.0390122	AIRE.p2	AK156475|Zfp217|228913|zinc finger protein 217	NM_001033299|Zfp217|228913|zinc finger protein 217
mm9_v1_chr15_-_35085306_35085560	0.0388759	AIRE.p2	AF271361|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	BC049123|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	U28726|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	AY058922|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	BC037440|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	NM_019635|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)
mm9_v1_chr5_+_140797575_140797589	0.0378887	AIRE.p2	
mm9_v1_chr18_+_36942877_36943029	0.037541	AIRE.p2	AK088789|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK014515|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK145003|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK077621|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	BC004596|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	NM_080636|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr18_-_12914177_12914270	0.0371755	AIRE.p2	AK209493|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr11_-_17111513_17111579	0.0369629	AIRE.p2	AK165942|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK007324|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009146|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009896|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK017153|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	BC020037|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AF349950|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr5_+_33760994_33761117	0.0361671	AIRE.p2	AK084585|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK163728|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr4_+_134479504_134479540	0.0359677	AIRE.p2	AK028145|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK003799|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK012363|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK150024|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK160993|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK169598|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK169760|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	NM_023665|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed	AK029529|D4Wsu53e|27981|DNA segment, Chr 4, Wayne State University 53, expressed
mm9_v1_chr1_+_82721562_82721635	0.0353489	AIRE.p2	AK217444|Mff|75734|mitochondrial fission factor	AK218934|Mff|75734|mitochondrial fission factor
mm9_v1_chr5_-_100465086_100465197	0.0349605	AIRE.p2	AK011143|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr16_-_57606866_57606989	0.0349028	AIRE.p2	BC038891|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	BC038682|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019808|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK080386|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK003195|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019979|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK012168|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK136657|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	NM_025599|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene
mm9_v1_chr14_+_54980488_54980535	0.0335915	AIRE.p2	AK139484|Oxa1l|69089|oxidase assembly 1-like	AK154304|Oxa1l|69089|oxidase assembly 1-like	AK007567|Oxa1l|69089|oxidase assembly 1-like	AK087756|Oxa1l|69089|oxidase assembly 1-like	AK028379|Oxa1l|69089|oxidase assembly 1-like	AK052432|Oxa1l|69089|oxidase assembly 1-like	AK077624|Oxa1l|69089|oxidase assembly 1-like	AK154532|Oxa1l|69089|oxidase assembly 1-like	AK163101|Oxa1l|69089|oxidase assembly 1-like	AK170898|Oxa1l|69089|oxidase assembly 1-like	NM_026936|Oxa1l|69089|oxidase assembly 1-like	AK044817|Oxa1l|69089|oxidase assembly 1-like	BC027191|Oxa1l|69089|oxidase assembly 1-like
mm9_v1_chr9_-_108551631_108551731	0.0335746	AIRE.p2	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr5_+_104121392_104121475	0.0334702	AIRE.p2	AK082878|Aff1|17355|AF4/FMR2 family, member 1
mm9_v1_chr1_+_169238849_169238926	0.0334101	AIRE.p2	AK162344|Tmco1|68944|transmembrane and coiled-coil domains 1	AK037709|Tmco1|68944|transmembrane and coiled-coil domains 1	BC019761|Tmco1|68944|transmembrane and coiled-coil domains 1	BC020098|Tmco1|68944|transmembrane and coiled-coil domains 1	BC011457|Tmco1|68944|transmembrane and coiled-coil domains 1
mm9_v1_chr2_-_87552060_87552060	0.0331121	AIRE.p2	NM_001011833|Olfr1137|258101|olfactory receptor 1137
mm9_v1_chr1_+_87804881_87804999	0.0327496	AIRE.p2	AK195066|Itm2c|64294|integral membrane protein 2C	AK181068|Itm2c|64294|integral membrane protein 2C	AK184077|Itm2c|64294|integral membrane protein 2C	AK184543|Itm2c|64294|integral membrane protein 2C	AK184789|Itm2c|64294|integral membrane protein 2C	AK185815|Itm2c|64294|integral membrane protein 2C	AK187837|Itm2c|64294|integral membrane protein 2C	AK202316|Itm2c|64294|integral membrane protein 2C	AK208625|Itm2c|64294|integral membrane protein 2C	AK210908|Itm2c|64294|integral membrane protein 2C	AK214441|Itm2c|64294|integral membrane protein 2C	AK214627|Itm2c|64294|integral membrane protein 2C	AK188840|Itm2c|64294|integral membrane protein 2C	AK215527|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr18_-_64648683_64648745	0.0324397	AIRE.p2	AK083560|Fech|14151|ferrochelatase	BC094548|Fech|14151|ferrochelatase	M61215|Fech|14151|ferrochelatase	AK004718|Fech|14151|ferrochelatase	NM_007998|Fech|14151|ferrochelatase	AK018738|Fech|14151|ferrochelatase	AK150685|Fech|14151|ferrochelatase
mm9_v1_chr4_-_6381171_6381368	0.0323523	AIRE.p2	AK134518|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	BC145961|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	BC145963|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor	AK147709|Nsmaf|18201|neutral sphingomyelinase (N-SMase) activation associated factor
mm9_v1_chr2_+_121282819_121282836	0.0323348	AIRE.p2	NM_026318|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	AK003580|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	BC038469|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene	AK009109|2310003F16Rik|67693|RIKEN cDNA 2310003F16 gene
mm9_v1_chr8_-_108462291_108462291	0.0321961	AIRE.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr9_+_43901941_43901990	0.0320688	AIRE.p2	AK047204|Usp2|53376|ubiquitin specific peptidase 2	AK081112|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr11_+_60268108_60268134	0.0316541	AIRE.p2	AJ243590|Drg2|13495|developmentally regulated GTP binding protein 2	NM_021354|Drg2|13495|developmentally regulated GTP binding protein 2
mm9_v1_chr17_-_35971652_35971809	0.0280129	AIRE.p2	AK080778|Tubb5|22154|tubulin, beta 5	AK088137|Tubb5|22154|tubulin, beta 5
mm9_v1_chr17_+_33226311_33226311	0.0279936	AIRE.p2	NM_001024950|Zfp563|240068|zinc finger protein 563
mm9_v1_chr9_-_39909072_39909072	0.0278026	AIRE.p2	NM_146608|Olfr984|258601|olfactory receptor 984
mm9_v1_chr5_-_42235518_42235530	0.0276317	AIRE.p2	AK046296|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK053690|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK134590|Bod1l|665775|biorientation of chromosomes in cell division 1-like
mm9_v1_chr8_+_125626249_125626348	0.0273467	AIRE.p2	NM_016738|Rpl13|270106|ribosomal protein L13	AK003487|Rpl13|270106|ribosomal protein L13	AK010989|Rpl13|270106|ribosomal protein L13	AK002787|Rpl13|270106|ribosomal protein L13	U28917|Rpl13|270106|ribosomal protein L13	BC085493|Rpl13|270106|ribosomal protein L13	BC034449|Rpl13|270106|ribosomal protein L13	BC055358|Rpl13|270106|ribosomal protein L13
mm9_v1_chr14_-_73762324_73762328	0.0269972	AIRE.p2	AK010248|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr12_+_111903331_111903389	0.0269416	AIRE.p2	AK151489|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1
mm9_v1_chr5_+_106129819_106129884	0.0265624	AIRE.p2	AK158262|Lrrc8d|231549|leucine rich repeat containing 8D	NM_178701|Lrrc8d|231549|leucine rich repeat containing 8D	BC037717|Lrrc8d|231549|leucine rich repeat containing 8D	AK050400|Lrrc8d|231549|leucine rich repeat containing 8D	AK170452|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr9_-_96379093_96379128	0.0264554	AIRE.p2	AK006703|Rnf7|19823|ring finger protein 7
mm9_v1_chr5_+_92984113_92984113	0.0261812	AIRE.p2	NM_001170572|Fam47e|384198|family with sequence similarity 47, member E
mm9_v1_chr9_-_39380841_39380898	0.0249805	AIRE.p2	NM_146508|Olfr959|258501|olfactory receptor 959	BC120617|Olfr959|258501|olfactory receptor 959	BC120619|Olfr959|258501|olfactory receptor 959
mm9_v1_chr3_-_100489321_100489392	0.0247138	AIRE.p2	AK013515|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03457|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03458|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr7_-_139758954_139758967	0.0246182	AIRE.p2	AK187824|Oat|18242|ornithine aminotransferase
mm9_v1_chr5_-_87997908_87998005	0.0238606	AIRE.p2	AF026073|Sult1d1|53315|sulfotransferase family 1D, member 1	AK133530|Sult1d1|53315|sulfotransferase family 1D, member 1	U32371|Sult1d1|53315|sulfotransferase family 1D, member 1	BC066190|Sult1d1|53315|sulfotransferase family 1D, member 1	BC010752|Sult1d1|53315|sulfotransferase family 1D, member 1
mm9_v1_chr7_-_24993103_24993167	0.0238347	AIRE.p2	BC005456|Zfp111|56707|zinc finger protein 111	AK135436|Zfp111|56707|zinc finger protein 111	NM_019940|Zfp111|56707|zinc finger protein 111
mm9_v1_chr7_+_24960063_24960104	0.0237419	AIRE.p2	NM_001029933|Zfp114|232966|zinc finger protein 114	AK147817|Zfp114|232966|zinc finger protein 114	AF167317|Zfp114|232966|zinc finger protein 114	AK139475|Zfp114|232966|zinc finger protein 114
mm9_v1_chr4_+_131399376_131399438	0.0235431	AIRE.p2	AK002317|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	AK002533|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	NM_025297|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	AK045834|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase	BC003864|Mecr|26922|mitochondrial trans-2-enoyl-CoA reductase
mm9_v1_chr2_+_38441497_38441644	0.0227744	AIRE.p2	AK214670|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK208733|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6
mm9_v1_chr3_+_154756499_154756551	0.0225093	AIRE.p2	AK015333|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	AK016634|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	BC112424|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	BC113130|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3	AK015758|Lrriq3|74435|leucine-rich repeats and IQ motif containing 3
mm9_v1_chr10_-_82996799_82996825	0.0224231	AIRE.p2	AK046198|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	BC034531|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2	AK086413|Aldh1l2|216188|aldehyde dehydrogenase 1 family, member L2
mm9_v1_chr17_-_53985142_53985282	0.0221589	AIRE.p2	AK007384|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	AK144336|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	BC022665|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	AY005469|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2	NM_026935|Sult1c2|69083|sulfotransferase family, cytosolic, 1C, member 2
mm9_v1_chr4_+_107562417_107562508	0.0211977	AIRE.p2	AK050486|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK003575|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK160674|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK050533|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	AK002776|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	NM_028754|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene	BC019215|0610037L13Rik|74098|RIKEN cDNA 0610037L13 gene
mm9_v1_chr11_-_102266342_102266375	0.0201531	AIRE.p2	AK211485|Slc25a39|68066|solute carrier family 25, member 39
mm9_v1_chr9_-_21572496_21572571	0.0196954	AIRE.p2	AK212559|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chr7_-_134335965_134336058	0.0194989	AIRE.p2	AK005198|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2
mm9_v1_chr2_+_30271579_30271778	0.0193247	AIRE.p2	AK049184|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC006626|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC052852|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK160980|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AY035997|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK046288|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr4_+_135750199_135750281	0.0190106	AIRE.p2	
mm9_v1_chrX_+_7339786_7339905	0.0188587	AIRE.p2	NM_001105196|Tcfe3|209446|transcription factor E3	NM_172472|Tcfe3|209446|transcription factor E3	AK139756|Tcfe3|209446|transcription factor E3	BC056358|Tcfe3|209446|transcription factor E3	BC063047|Tcfe3|209446|transcription factor E3	AK144751|Tcfe3|209446|transcription factor E3	AK145832|Tcfe3|209446|transcription factor E3	AK145029|Tcfe3|209446|transcription factor E3	AK144657|Tcfe3|209446|transcription factor E3	AK154690|Tcfe3|209446|transcription factor E3	BC051568|Tcfe3|209446|transcription factor E3	AK089762|Tcfe3|209446|transcription factor E3	AK159162|Tcfe3|209446|transcription factor E3	BC032963|Tcfe3|209446|transcription factor E3
mm9_v1_chr7_+_50469408_50469408	0.0185705	AIRE.p2	EU599041|EU599041|100170401|expressed sequence EU599041	EU599042|EU599041|100170401|expressed sequence EU599041	NM_001177525|EU599041|100170401|expressed sequence EU599041
mm9_v1_chr5_-_100588826_100588826	0.0184946	AIRE.p2	BC055321|Tmem150c|231503|transmembrane protein 150C	NM_182841|Tmem150c|231503|transmembrane protein 150C
mm9_v1_chr5_-_138040961_138040963	0.0180923	AIRE.p2	AK004495|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr15_-_66332402_66332471	0.016969	AIRE.p2	AF092208|Lrrc6|54562|leucine rich repeat containing 6 (testis)	BC046277|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK077124|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK016236|Lrrc6|54562|leucine rich repeat containing 6 (testis)	NM_019457|Lrrc6|54562|leucine rich repeat containing 6 (testis)
mm9_v1_chr3_+_13471681_13471721	0.0161079	AIRE.p2	AK079659|Ralyl|76897|RALY RNA binding protein-like	AK032086|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr7_+_128084130_128084187	0.0155535	AIRE.p2	AK002918|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr1_+_53353995_53354002	0.0155525	AIRE.p2	BC023903|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr11_-_61058671_61058791	0.015543	AIRE.p2	
mm9_v1_chr7_+_63185457_63185630	0.0153747	AIRE.p2	AK195390|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK052509|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chrX_-_75336699_75336712	0.0153416	AIRE.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr17_+_24544500_24544654	0.0149021	AIRE.p2	BC049911|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	BC056614|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chr7_-_13007839_13007937	0.0144768	AIRE.p2	AK137311|Zfp551|619331|zinc fingr protein 551	NM_001033820|Zfp551|619331|zinc fingr protein 551	BC141160|Zfp551|619331|zinc fingr protein 551	BC145466|Zfp551|619331|zinc fingr protein 551
mm9_v1_chr4_+_86520317_86520392	0.0144179	AIRE.p2	BC059819|Acer2|230379|alkaline ceramidase 2	NM_139306|Acer2|230379|alkaline ceramidase 2	AK085306|Acer2|230379|alkaline ceramidase 2	AF282864|Acer2|230379|alkaline ceramidase 2	AY312515|Acer2|230379|alkaline ceramidase 2
mm9_v1_chr12_+_34079718_34079950	0.0141169	AIRE.p2	AK015697|Efcab10|75040|EF-hand calcium binding domain 10	BC099564|Efcab10|75040|EF-hand calcium binding domain 10	NM_029152|Efcab10|75040|EF-hand calcium binding domain 10	BC119387|Efcab10|75040|EF-hand calcium binding domain 10	BC120662|Efcab10|75040|EF-hand calcium binding domain 10
mm9_v1_chr11_+_60541880_60542010	0.0135885	AIRE.p2	NM_001009927|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK156917|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK171444|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	BC088984|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)
mm9_v1_chr18_+_45428413_45428658	0.0130388	AIRE.p2	AK076494|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK033158|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr11_+_49988344_49988383	0.0128426	AIRE.p2	AK019392|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	NM_026543|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	BC028428|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	AK003636|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene
mm9_v1_chrX_+_38754480_38754557	0.0118759	AIRE.p2	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chrM_-_14069_14070	0.00944053	AIRE.p2	AK138272|ND6|17722|NADH dehydrogenase subunit 6	AK140300|ND6|17722|NADH dehydrogenase subunit 6
mm9_v1_chr2_+_181375295_181375333	0.00926818	AIRE.p2	AK182198|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK210126|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)
mm9_v1_chr15_+_76531891_76531971	0.00897554	AIRE.p2	AK009269|Mfsd3|69572|major facilitator superfamily domain containing 3	BC085305|Mfsd3|69572|major facilitator superfamily domain containing 3	AK089539|Mfsd3|69572|major facilitator superfamily domain containing 3	NM_027122|Mfsd3|69572|major facilitator superfamily domain containing 3
mm9_v1_chrX_-_165015162_165015164	0.00885433	AIRE.p2	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr6_+_73198498_73198722	0.00826707	AIRE.p2	NM_019879|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK088888|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK005080|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK087390|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK002754|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AF144101|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK139288|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	BC011087|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK184184|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr8_+_74967757_74967859	0.007984	AIRE.p2	AK133815|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	NM_028170|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	BC008558|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene	AK089918|1700030K09Rik|72254|RIKEN cDNA 1700030K09 gene
mm9_v1_chr10_-_116652417_116652563	0.00757615	AIRE.p2	AK188062|Yeats4|64050|YEATS domain containing 4
mm9_v1_chr1_-_99873795_99873812	0.00738143	AIRE.p2	BC129869|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr4_+_126803283_126803296	0.00716769	AIRE.p2	AK160613|Gm12942|100039968|predicted gene 12942	NM_001099319|Gm12942|100039968|predicted gene 12942
mm9_v1_chr10_+_69487700_69487703	0.0071115	AIRE.p2	AK033919|Ank3|11735|ankyrin 3, epithelial	AK036171|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr5_-_135115175_135115219	0.00708006	AIRE.p2	AK169312|Eif4h|22384|eukaryotic translation initiation factor 4H	AK149841|Eif4h|22384|eukaryotic translation initiation factor 4H	AK136999|Eif4h|22384|eukaryotic translation initiation factor 4H	AK135390|Eif4h|22384|eukaryotic translation initiation factor 4H	AK166567|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169353|Eif4h|22384|eukaryotic translation initiation factor 4H	NM_033561|Eif4h|22384|eukaryotic translation initiation factor 4H	AK045004|Eif4h|22384|eukaryotic translation initiation factor 4H	AK150088|Eif4h|22384|eukaryotic translation initiation factor 4H	BC014796|Eif4h|22384|eukaryotic translation initiation factor 4H	AK088818|Eif4h|22384|eukaryotic translation initiation factor 4H	AK168872|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169407|Eif4h|22384|eukaryotic translation initiation factor 4H	AK132034|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr1_+_92811676_92811782	0.00694719	AIRE.p2	NM_053015|Mlph|171531|melanophilin	AF384098|Mlph|171531|melanophilin	BC006900|Mlph|171531|melanophilin	AK008973|Mlph|171531|melanophilin	AK019883|Mlph|171531|melanophilin	AK148274|Mlph|171531|melanophilin	BC150804|Mlph|171531|melanophilin
mm9_v1_chr3_+_136539113_136539149	0.00669164	AIRE.p2	AK189167|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK191345|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK211949|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK211995|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK219430|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr9_+_4383536_4383536	0.00653856	AIRE.p2	AK180204|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	BC014729|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene	NM_145609|8430410K20Rik|78100|RIKEN cDNA 8430410K20 gene
mm9_v1_chr7_+_115077035_115077035	0.0064193	AIRE.p2	BC148218|Olfr473|258771|olfactory receptor 473	NM_146775|Olfr473|258771|olfactory receptor 473
mm9_v1_chr11_+_29642059_29642120	0.00594623	AIRE.p2	AK213159|Rtn4|68585|reticulon 4	AK218108|Rtn4|68585|reticulon 4
mm9_v1_chr19_-_11893210_11893323	0.00571747	AIRE.p2	D38375|Stx3|20908|syntaxin 3	D29800|Stx3|20908|syntaxin 3	AK170105|Stx3|20908|syntaxin 3	BC024844|Stx3|20908|syntaxin 3	D29797|Stx3|20908|syntaxin 3	D29798|Stx3|20908|syntaxin 3
mm9_v1_chr12_+_85758140_85758149	0.0040333	AIRE.p2	AK009420|Rnf113a2|66381|ring finger protein 113A2	NM_025525|Rnf113a2|66381|ring finger protein 113A2
mm9_v1_chr9_-_7872896_7873169	0.00269465	AIRE.p2	AK172636|Birc3|11796|baculoviral IAP repeat-containing 3	BC011338|Birc3|11796|baculoviral IAP repeat-containing 3	U88908|Birc3|11796|baculoviral IAP repeat-containing 3	AK162108|Birc3|11796|baculoviral IAP repeat-containing 3	NM_007464|Birc3|11796|baculoviral IAP repeat-containing 3
mm9_v1_chr16_+_59471600_59471691	0.00260376	AIRE.p2	NM_025910|Mina|67014|myc induced nuclear antigen	AK007810|Mina|67014|myc induced nuclear antigen	AK032595|Mina|67014|myc induced nuclear antigen	AK013451|Mina|67014|myc induced nuclear antigen	AK014426|Mina|67014|myc induced nuclear antigen	AK019117|Mina|67014|myc induced nuclear antigen	AK031671|Mina|67014|myc induced nuclear antigen	BC025109|Mina|67014|myc induced nuclear antigen	BC058242|Mina|67014|myc induced nuclear antigen
mm9_v1_chr11_-_22760335_22760479	0.00252347	AIRE.p2	BC009075|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	NM_001169114|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
mm9_v1_chr7_+_117161839_117161861	0.00242403	AIRE.p2	AK187705|Ipo7|233726|importin 7
mm9_v1_chr1_+_17591981_17592085	0.0015262	AIRE.p2	AK030960|Pi15|94227|peptidase inhibitor 15	NM_053191|Pi15|94227|peptidase inhibitor 15	AK040961|Pi15|94227|peptidase inhibitor 15	AF329196|Pi15|94227|peptidase inhibitor 15	BC116705|Pi15|94227|peptidase inhibitor 15
mm9_v1_chr2_-_105843408_105843434	0.00136126	AIRE.p2	BC030072|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24	AK011571|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24
mm9_v1_chr5_-_92776160_92776261	0.00134339	AIRE.p2	AK152838|Cxcl10|15945|chemokine (C-X-C motif) ligand 10
mm9_v1_chr13_-_21545556_21545633	0.000825118	AIRE.p2	AK156196|Zfp187|432731|zinc finger protein 187	NM_001013786|Zfp187|432731|zinc finger protein 187
mm9_v1_chr11_-_75346554_75346608	0.00040045	AIRE.p2	
mm9_v1_chr13_-_61037960_61037985	0.000337667	AIRE.p2	NM_007796|Ctla2a|13024|cytotoxic T lymphocyte-associated protein 2 alpha
mm9_v1_chr9_-_53475591_53475593	0.00033258	AIRE.p2	AK018437|Cul5|75717|cullin 5
mm9_v1_chr6_+_4484651_4484672	0.0002096	AIRE.p2	AK159120|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr4_+_99654571_99654630	4.3285e-05	AIRE.p2	BC005617|Pgm2|72157|phosphoglucomutase 2
mm9_v1_chr6_-_87716204_87716225	1.7766e-06	AIRE.p2	
