mm9_v1_chr6_-_98978185_98978383	3.93581	AUGGCAC	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr1_-_157264398_157264577	3.58846	AUGGCAC	AK147403|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	BC153872|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF114753|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	BC075721|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AK141660|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	NM_011273|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1
mm9_v1_chr14_+_104049453_104049469	3.09885	AUGGCAC	BC079866|Slain1|105439|SLAIN motif family, member 1	NM_198014|Slain1|105439|SLAIN motif family, member 1
mm9_v1_chr6_-_12699189_12699252	3.01758	AUGGCAC	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr4_+_43071852_43071944	2.9919	AUGGCAC	AK161056|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_001081413|Unc13b|22249|unc-13 homolog B (C. elegans)	BC157967|Unc13b|22249|unc-13 homolog B (C. elegans)	BC158025|Unc13b|22249|unc-13 homolog B (C. elegans)	NM_021468|Unc13b|22249|unc-13 homolog B (C. elegans)
mm9_v1_chr6_+_47194393_47194453	2.68342	AUGGCAC	NM_025771|Cntnap2|66797|contactin associated protein-like 2	AK017341|Cntnap2|66797|contactin associated protein-like 2	AK013139|Cntnap2|66797|contactin associated protein-like 2	BC029826|Cntnap2|66797|contactin associated protein-like 2	BC103799|Cntnap2|66797|contactin associated protein-like 2
mm9_v1_chr2_-_44968728_44968798	2.50141	AUGGCAC	AJ535782|Zeb2|24136|zinc finger E-box binding homeobox 2	AK031541|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535780|Zeb2|24136|zinc finger E-box binding homeobox 2	NM_015753|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr2_-_153067043_153067211	2.173	AUGGCAC	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr3_+_30993952_30994057	2.11576	AUGGCAC	AK162952|Skil|20482|SKI-like	NM_001039090|Skil|20482|SKI-like	NM_011386|Skil|20482|SKI-like	AK087797|Skil|20482|SKI-like	AK154471|Skil|20482|SKI-like	AK171402|Skil|20482|SKI-like	BC018600|Skil|20482|SKI-like	AK163526|Skil|20482|SKI-like
mm9_v1_chr2_-_65405546_65405588	2.06442	AUGGCAC	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr12_-_86113948_86114061	1.87748	AUGGCAC	AK158624|Npc2|67963|Niemann Pick type C2	NM_023409|Npc2|67963|Niemann Pick type C2
mm9_v1_chr19_-_28085534_28085655	1.79844	AUGGCAC	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr2_-_121632749_121632811	1.68639	AUGGCAC	AK054484|Frmd5|228564|FERM domain containing 5	BC062889|Frmd5|228564|FERM domain containing 5	AK146383|Frmd5|228564|FERM domain containing 5	AK048865|Frmd5|228564|FERM domain containing 5	NM_172673|Frmd5|228564|FERM domain containing 5
mm9_v1_chr1_-_153347884_153348127	1.66256	AUGGCAC	BC020122|Rnf2|19821|ring finger protein 2	AK090066|Rnf2|19821|ring finger protein 2	AK013124|Rnf2|19821|ring finger protein 2	AK030319|Rnf2|19821|ring finger protein 2	AK012358|Rnf2|19821|ring finger protein 2	NM_011277|Rnf2|19821|ring finger protein 2	AK145767|Rnf2|19821|ring finger protein 2
mm9_v1_chr12_+_72932064_72932126	1.63459	AUGGCAC	BC076585|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_026102|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_172464|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK129185|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK165335|Daam1|208846|dishevelled associated activator of morphogenesis 1	BC038403|Daam1|208846|dishevelled associated activator of morphogenesis 1
mm9_v1_chr7_-_107007359_107007399	1.54709	AUGGCAC	AK134578|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	NM_025668|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK017504|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)	AK168173|Spcs2|66624|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm9_v1_chr2_-_73730605_73730700	1.48568	AUGGCAC	AK139844|Atf2|11909|activating transcription factor 2	AK146839|Atf2|11909|activating transcription factor 2	AK139515|Atf2|11909|activating transcription factor 2	BC079883|Atf2|11909|activating transcription factor 2	BC085137|Atf2|11909|activating transcription factor 2	BC082596|Atf2|11909|activating transcription factor 2	AK035438|Atf2|11909|activating transcription factor 2	AK140855|Atf2|11909|activating transcription factor 2	AK144977|Atf2|11909|activating transcription factor 2	AK051591|Atf2|11909|activating transcription factor 2	AK087424|Atf2|11909|activating transcription factor 2	NM_001025093|Atf2|11909|activating transcription factor 2	NM_009715|Atf2|11909|activating transcription factor 2	AK145887|Atf2|11909|activating transcription factor 2
mm9_v1_chrX_+_55283804_55283819	1.47091	AUGGCAC	AK139364|Zic3|22773|zinc finger protein of the cerebellum 3	NM_009575|Zic3|22773|zinc finger protein of the cerebellum 3
mm9_v1_chr6_-_31513817_31513936	1.45565	AUGGCAC	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr1_-_77511653_77511664	1.43145	AUGGCAC	AK028509|Epha4|13838|Eph receptor A4	AK147698|Epha4|13838|Eph receptor A4	AK132203|Epha4|13838|Eph receptor A4	NM_007936|Epha4|13838|Eph receptor A4	S57168|Epha4|13838|Eph receptor A4	X65138|Epha4|13838|Eph receptor A4
mm9_v1_chr2_-_140497204_140497211	1.40986	AUGGCAC	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chrX_-_140367467_140367853	1.38008	AUGGCAC	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr4_+_13670425_13670448	1.32414	AUGGCAC	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr12_+_30213224_30213265	1.31178	AUGGCAC	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr17_+_83750246_83750339	1.29445	AUGGCAC	AK144604|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114361|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114362|Eml4|78798|echinoderm microtubule associated protein like 4	NM_199466|Eml4|78798|echinoderm microtubule associated protein like 4	BC067011|Eml4|78798|echinoderm microtubule associated protein like 4	BC070427|Eml4|78798|echinoderm microtubule associated protein like 4	BC065178|Eml4|78798|echinoderm microtubule associated protein like 4	BC066099|Eml4|78798|echinoderm microtubule associated protein like 4	BC079619|Eml4|78798|echinoderm microtubule associated protein like 4
mm9_v1_chr9_-_36954842_36954852	1.27522	AUGGCAC	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr3_-_157694667_157694727	1.22962	AUGGCAC	BC069945|Srsf11|69207|serine/arginine-rich splicing factor 11	BC021809|Srsf11|69207|serine/arginine-rich splicing factor 11	AK029394|Srsf11|69207|serine/arginine-rich splicing factor 11	BC002111|Srsf11|69207|serine/arginine-rich splicing factor 11	AK146719|Srsf11|69207|serine/arginine-rich splicing factor 11	AK002411|Srsf11|69207|serine/arginine-rich splicing factor 11	NM_001093753|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr2_+_130732201_130732231	1.21923	AUGGCAC	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
mm9_v1_chr1_+_62749850_62750115	1.20745	AUGGCAC	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr18_+_37844927_37845053	1.20136	AUGGCAC	BC049814|Pcdhga4|93712|protocadherin gamma subfamily A, 4	AY013798|Pcdhga4|93712|protocadherin gamma subfamily A, 4	NM_033587|Pcdhga4|93712|protocadherin gamma subfamily A, 4
mm9_v1_chr3_-_84024766_84024812	1.18263	AUGGCAC	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr18_+_37854011_37854154	1.09363	AUGGCAC	AK043161|Pcdhga5|93713|protocadherin gamma subfamily A, 5	BC057404|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AK043491|Pcdhga5|93713|protocadherin gamma subfamily A, 5	AY013799|Pcdhga5|93713|protocadherin gamma subfamily A, 5	NM_033588|Pcdhga5|93713|protocadherin gamma subfamily A, 5
mm9_v1_chr1_+_43502537_43502605	1.08908	AUGGCAC	AK051665|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	NM_010879|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	AK014949|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chr12_-_99816091_99816149	1.07277	AUGGCAC	BC132487|Kcnk10|72258|potassium channel, subfamily K, member 10	BC137869|Kcnk10|72258|potassium channel, subfamily K, member 10	AK082153|Kcnk10|72258|potassium channel, subfamily K, member 10	NM_029911|Kcnk10|72258|potassium channel, subfamily K, member 10
mm9_v1_chrX_-_163647088_163647149	1.06237	AUGGCAC	AK010659|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK088783|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK162286|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK169718|Tmsb4x|19241|thymosin, beta 4, X chromosome	AK169108|Tmsb4x|19241|thymosin, beta 4, X chromosome	NM_021278|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr10_-_118677059_118677116	0.98402	AUGGCAC	AK129225|Cand1|71902|cullin associated and neddylation disassociated 1	AK144869|Cand1|71902|cullin associated and neddylation disassociated 1	AK158080|Cand1|71902|cullin associated and neddylation disassociated 1	NM_027994|Cand1|71902|cullin associated and neddylation disassociated 1
mm9_v1_chr14_-_21871647_21871707	0.975444	AUGGCAC	AF242857|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit	NM_018829|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr11_+_80290509_80290569	0.967164	AUGGCAC	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr12_+_30219769_30219800	0.956354	AUGGCAC	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr8_+_34710049_34710163	0.913518	AUGGCAC	NM_017374|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	BC058582|Ppp2cb|19053|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm9_v1_chr2_+_31101302_31101442	0.90101	AUGGCAC	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr9_+_74885522_74885560	0.871807	AUGGCAC	BC040206|Arpp19|59046|cAMP-regulated phosphoprotein 19	NM_021548|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr9_+_59426108_59426143	0.857986	AUGGCAC	BC052406|Celf6|76183|CUGBP, Elav-like family member 6	NM_175235|Celf6|76183|CUGBP, Elav-like family member 6
mm9_v1_chr17_+_73185961_73186089	0.848846	AUGGCAC	AK167998|Ypel5|383295|yippee-like 5 (Drosophila)	AK165943|Ypel5|383295|yippee-like 5 (Drosophila)	AK169241|Ypel5|383295|yippee-like 5 (Drosophila)	AK049096|Ypel5|383295|yippee-like 5 (Drosophila)	AK171010|Ypel5|383295|yippee-like 5 (Drosophila)	NM_027166|Ypel5|383295|yippee-like 5 (Drosophila)	AK046281|Ypel5|383295|yippee-like 5 (Drosophila)	AK049644|Ypel5|383295|yippee-like 5 (Drosophila)	AK169986|Ypel5|383295|yippee-like 5 (Drosophila)	AK137446|Ypel5|383295|yippee-like 5 (Drosophila)	AK010201|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr13_-_18035913_18036071	0.81785	AUGGCAC	AK013881|Rala|56044|v-ral simian leukemia viral oncogene homolog A (ras related)	BC031741|Rala|56044|v-ral simian leukemia viral oncogene homolog A (ras related)	NM_019491|Rala|56044|v-ral simian leukemia viral oncogene homolog A (ras related)
mm9_v1_chr13_-_34437042_34437162	0.810297	AUGGCAC	AK147397|Slc22a23|73102|solute carrier family 22, member 23	NM_001033167|Slc22a23|73102|solute carrier family 22, member 23
mm9_v1_chr10_+_68675404_68675423	0.785527	AUGGCAC	AK034826|Rhobtb1|69288|Rho-related BTB domain containing 1	NM_001081347|Rhobtb1|69288|Rho-related BTB domain containing 1	BC099973|Rhobtb1|69288|Rho-related BTB domain containing 1
mm9_v1_chr8_+_3393005_3393067	0.768305	AUGGCAC	AK041423|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	NM_133962|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	BC060639|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	AK147923|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18
mm9_v1_chr11_+_77499638_77499656	0.764708	AUGGCAC	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr14_-_109313447_109313461	0.755499	AUGGCAC	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr10_+_110601745_110601988	0.75344	AUGGCAC	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr4_+_13678443_13678575	0.743294	AUGGCAC	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr1_-_30920095_30920100	0.712582	AUGGCAC	BC011226|Phf3|213109|PHD finger protein 3	BC032205|Phf3|213109|PHD finger protein 3	BC137913|Phf3|213109|PHD finger protein 3	NM_001081080|Phf3|213109|PHD finger protein 3
mm9_v1_chr1_+_174056868_174056950	0.700966	AUGGCAC	AK029368|Pex19|19298|peroxisomal biogenesis factor 19	NM_001159525|Pex19|19298|peroxisomal biogenesis factor 19	NM_023041|Pex19|19298|peroxisomal biogenesis factor 19	AK028449|Pex19|19298|peroxisomal biogenesis factor 19	AK075576|Pex19|19298|peroxisomal biogenesis factor 19	AK170175|Pex19|19298|peroxisomal biogenesis factor 19	AK012785|Pex19|19298|peroxisomal biogenesis factor 19	BC019767|Pex19|19298|peroxisomal biogenesis factor 19	Y09046|Pex19|19298|peroxisomal biogenesis factor 19	CT010305|Pex19|19298|peroxisomal biogenesis factor 19	BC012517|Pex19|19298|peroxisomal biogenesis factor 19
mm9_v1_chr8_+_129587894_129588193	0.689899	AUGGCAC	BC090616|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001122850|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_033620|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK052416|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053762|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053563|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK137690|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053576|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY026057|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC141187|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC145508|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr9_+_74885420_74885510	0.679758	AUGGCAC	NM_001142655|Arpp19|59046|cAMP-regulated phosphoprotein 19	AK076052|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr13_+_114584715_114584832	0.676712	AUGGCAC	NM_172595|Arl15|218639|ADP-ribosylation factor-like 15	AK039965|Arl15|218639|ADP-ribosylation factor-like 15	AK052164|Arl15|218639|ADP-ribosylation factor-like 15	AK053953|Arl15|218639|ADP-ribosylation factor-like 15	AK050979|Arl15|218639|ADP-ribosylation factor-like 15	BC120664|Arl15|218639|ADP-ribosylation factor-like 15	BC120666|Arl15|218639|ADP-ribosylation factor-like 15	BC144993|Arl15|218639|ADP-ribosylation factor-like 15	AK048736|Arl15|218639|ADP-ribosylation factor-like 15
mm9_v1_chr4_-_34830178_34830200	0.665197	AUGGCAC	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr2_+_28496752_28496773	0.650094	AUGGCAC	AK030318|Tsc1|64930|tuberous sclerosis 1	AJ271912|Tsc1|64930|tuberous sclerosis 1	AK147428|Tsc1|64930|tuberous sclerosis 1	NM_022887|Tsc1|64930|tuberous sclerosis 1	AK083363|Tsc1|64930|tuberous sclerosis 1	AK078140|Tsc1|64930|tuberous sclerosis 1	AK154416|Tsc1|64930|tuberous sclerosis 1
mm9_v1_chr13_+_105607262_105607338	0.641566	AUGGCAC	BC038302|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	AK018357|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	AK020113|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	AK013737|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	AK014102|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	AK013429|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	BC096661|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	NM_026075|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	BC027133|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	BC116993|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	BC116999|Srek1ip1|67288|splicing regulatory glutamine/lysine-rich protein 1interacting protein 1
mm9_v1_chr12_-_93087514_93087619	0.636782	AUGGCAC	AF063095|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160936|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	BC026816|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005023|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK146022|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK161546|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160420|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005544|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK220502|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_001039089|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_011344|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)
mm9_v1_chr8_+_41597112_41597221	0.596343	AUGGCAC	AK171221|Vps37a|52348|vacuolar protein sorting 37A (yeast)	NM_033560|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170961|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK171055|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK137479|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK016385|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK048942|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK054055|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170280|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK157507|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170943|Vps37a|52348|vacuolar protein sorting 37A (yeast)	BC039290|Vps37a|52348|vacuolar protein sorting 37A (yeast)	BC110396|Vps37a|52348|vacuolar protein sorting 37A (yeast)
mm9_v1_chr7_-_87260156_87260248	0.583801	AUGGCAC	AK213553|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK145753|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AF212319|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK088110|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK146564|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK161640|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	BC060030|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK169395|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	NM_173011|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm9_v1_chr14_-_67691221_67691310	0.568849	AUGGCAC	BC080692|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161704|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167530|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK220192|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161507|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	NM_028032|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK010380|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	BC065100|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK090027|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK164497|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167189|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm9_v1_chr18_+_37828606_37828758	0.565115	AUGGCAC	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr12_-_55963776_55963890	0.55464	AUGGCAC	AK147174|Cfl2|12632|cofilin 2, muscle	BC007138|Cfl2|12632|cofilin 2, muscle	AK004659|Cfl2|12632|cofilin 2, muscle	L29468|Cfl2|12632|cofilin 2, muscle	NM_007688|Cfl2|12632|cofilin 2, muscle
mm9_v1_chr14_-_66043991_66044045	0.54536	AUGGCAC	D50055|Pnoc|18155|prepronociceptin	BC119372|Pnoc|18155|prepronociceptin	BC144865|Pnoc|18155|prepronociceptin	D50056|Pnoc|18155|prepronociceptin	AK045893|Pnoc|18155|prepronociceptin	NM_010932|Pnoc|18155|prepronociceptin
mm9_v1_chr12_+_111723922_111723992	0.52905	AUGGCAC	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr13_+_14156038_14156092	0.51259	AUGGCAC	AK136105|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK041414|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_194262|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_198122|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK161669|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK031062|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)
mm9_v1_chr5_+_9266137_9266216	0.50125	AUGGCAC	AK079644|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK165601|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK081041|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK034358|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK045969|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK048738|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	AK133610|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	NM_172706|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC132290|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene	BC138012|9330182L06Rik|231014|RIKEN cDNA 9330182L06 gene
mm9_v1_chr18_+_37833939_37833988	0.493453	AUGGCAC	BC060691|Pcdhga3|93711|protocadherin gamma subfamily A, 3	NM_033586|Pcdhga3|93711|protocadherin gamma subfamily A, 3
mm9_v1_chr6_-_32538191_32538191	0.476073	AUGGCAC	AB073228|Plxna4|243743|plexin A4	NM_175750|Plxna4|243743|plexin A4
mm9_v1_chr18_+_37890662_37890807	0.471994	AUGGCAC	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr4_+_154865439_154865649	0.471326	AUGGCAC	NM_001160016|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_001160017|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_008142|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK156101|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	BC013058|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK163844|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr11_+_75492764_75492890	0.446792	AUGGCAC	AK154987|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028179|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK163291|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK152549|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK088519|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK052795|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK139089|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK036905|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028488|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	NM_133656|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161356|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161761|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC012216|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC031149|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	S72408|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AF239673|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm9_v1_chr6_+_67216948_67217032	0.427145	AUGGCAC	AK004678|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113564|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113565|Serbp1|66870|serpine1 mRNA binding protein 1	NM_001113566|Serbp1|66870|serpine1 mRNA binding protein 1	NM_025814|Serbp1|66870|serpine1 mRNA binding protein 1	AK010860|Serbp1|66870|serpine1 mRNA binding protein 1	AK144764|Serbp1|66870|serpine1 mRNA binding protein 1	AK158095|Serbp1|66870|serpine1 mRNA binding protein 1	AK010851|Serbp1|66870|serpine1 mRNA binding protein 1	AK011051|Serbp1|66870|serpine1 mRNA binding protein 1	AK149505|Serbp1|66870|serpine1 mRNA binding protein 1	AK012390|Serbp1|66870|serpine1 mRNA binding protein 1	AK088278|Serbp1|66870|serpine1 mRNA binding protein 1	AK131990|Serbp1|66870|serpine1 mRNA binding protein 1	AK135473|Serbp1|66870|serpine1 mRNA binding protein 1	AK139670|Serbp1|66870|serpine1 mRNA binding protein 1	AK146418|Serbp1|66870|serpine1 mRNA binding protein 1	AK045190|Serbp1|66870|serpine1 mRNA binding protein 1	BC006030|Serbp1|66870|serpine1 mRNA binding protein 1	BC013665|Serbp1|66870|serpine1 mRNA binding protein 1	BC030502|Serbp1|66870|serpine1 mRNA binding protein 1
mm9_v1_chr9_-_113935832_113935880	0.417172	AUGGCAC	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr8_+_123059756_123059756	0.406987	AUGGCAC	AK033263|Gse1|382034|genetic suppressor element 1	NM_001145897|Gse1|382034|genetic suppressor element 1
mm9_v1_chr6_-_13789847_13789902	0.406826	AUGGCAC	BC065154|Gpr85|64450|G protein-coupled receptor 85	NM_145066|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr9_-_86465373_86465470	0.40059	AUGGCAC	BC138700|Pgm3|109785|phosphoglucomutase 3	AK051706|Pgm3|109785|phosphoglucomutase 3	AK032776|Pgm3|109785|phosphoglucomutase 3	AK049337|Pgm3|109785|phosphoglucomutase 3	AK169141|Pgm3|109785|phosphoglucomutase 3	AK169082|Pgm3|109785|phosphoglucomutase 3	AK169787|Pgm3|109785|phosphoglucomutase 3	AK165513|Pgm3|109785|phosphoglucomutase 3	AK013402|Pgm3|109785|phosphoglucomutase 3	AK036561|Pgm3|109785|phosphoglucomutase 3	AK049758|Pgm3|109785|phosphoglucomutase 3	AK028066|Pgm3|109785|phosphoglucomutase 3	AK160913|Pgm3|109785|phosphoglucomutase 3	AK043547|Pgm3|109785|phosphoglucomutase 3	NM_001163746|Pgm3|109785|phosphoglucomutase 3	NM_028352|Pgm3|109785|phosphoglucomutase 3
mm9_v1_chr3_+_16083164_16083288	0.385423	AUGGCAC	NM_001145919|Ythdf3|229096|YTH domain family 3	NM_172677|Ythdf3|229096|YTH domain family 3	BC067040|Ythdf3|229096|YTH domain family 3	AK039176|Ythdf3|229096|YTH domain family 3	AK137245|Ythdf3|229096|YTH domain family 3	BC067042|Ythdf3|229096|YTH domain family 3	AK053736|Ythdf3|229096|YTH domain family 3	BC057158|Ythdf3|229096|YTH domain family 3
mm9_v1_chr3_-_157699581_157699608	0.377	AUGGCAC	NM_001093752|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr11_-_87172419_87172533	0.367453	AUGGCAC	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr15_+_44259636_44259698	0.364112	AUGGCAC	AK007877|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AF173297|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	BC048361|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	NM_175009|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK032957|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK162511|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK160628|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK016562|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK087816|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)
mm9_v1_chr11_+_51912319_51912329	0.359223	AUGGCAC	AK076110|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	NM_019411|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm9_v1_chr10_-_66747843_66748097	0.351839	AUGGCAC	AK181810|Nrbf2|641340|nuclear receptor binding factor 2	AK189272|Nrbf2|641340|nuclear receptor binding factor 2	AK205591|Nrbf2|641340|nuclear receptor binding factor 2	AK004200|Nrbf2|641340|nuclear receptor binding factor 2	BC019448|Nrbf2|641340|nuclear receptor binding factor 2	NM_001036293|Nrbf2|641340|nuclear receptor binding factor 2	AK002810|Nrbf2|641340|nuclear receptor binding factor 2
mm9_v1_chr18_+_37839910_37840111	0.351612	AUGGCAC	BC054741|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	BC098367|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	AY013804|Pcdhgb1|93699|protocadherin gamma subfamily B, 1	NM_033574|Pcdhgb1|93699|protocadherin gamma subfamily B, 1
mm9_v1_chr12_+_54349663_54349663	0.349635	AUGGCAC	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr16_-_87432721_87432850	0.32908	AUGGCAC	AK173009|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK165062|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK036725|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK019706|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116272|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116273|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	NM_001081068|Ltn1|78913|listerin E3 ubiquitin protein ligase 1
mm9_v1_chr7_+_104728398_104728430	0.322914	AUGGCAC	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr14_+_57506630_57506655	0.317839	AUGGCAC	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr8_+_97296066_97296079	0.315741	AUGGCAC	NM_009142|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr11_-_77421308_77421363	0.309589	AUGGCAC	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr16_-_55934909_55934966	0.308349	AUGGCAC	BC065773|Cep97|74201|centrosomal protein 97	AK079884|Cep97|74201|centrosomal protein 97	AK154885|Cep97|74201|centrosomal protein 97	AK012971|Cep97|74201|centrosomal protein 97	AK080249|Cep97|74201|centrosomal protein 97	BC067049|Cep97|74201|centrosomal protein 97	NM_001159364|Cep97|74201|centrosomal protein 97	NM_001159365|Cep97|74201|centrosomal protein 97	NM_001159366|Cep97|74201|centrosomal protein 97	NM_028815|Cep97|74201|centrosomal protein 97	AK040079|Cep97|74201|centrosomal protein 97
mm9_v1_chr1_-_156573049_156573160	0.275391	AUGGCAC	NM_009782|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit	BC150750|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm9_v1_chr11_-_102559011_102559087	0.272422	AUGGCAC	AK166820|Ccdc43|52715|coiled-coil domain containing 43	AK009319|Ccdc43|52715|coiled-coil domain containing 43	AK011254|Ccdc43|52715|coiled-coil domain containing 43	NM_025918|Ccdc43|52715|coiled-coil domain containing 43	AK028834|Ccdc43|52715|coiled-coil domain containing 43	AK161543|Ccdc43|52715|coiled-coil domain containing 43	BC058520|Ccdc43|52715|coiled-coil domain containing 43	BC061076|Ccdc43|52715|coiled-coil domain containing 43
mm9_v1_chr6_-_134516930_134517009	0.270603	AUGGCAC	BC060704|Lrp6|16974|low density lipoprotein receptor-related protein 6	NM_008514|Lrp6|16974|low density lipoprotein receptor-related protein 6
mm9_v1_chr10_+_26492282_26492396	0.258543	AUGGCAC	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr10_-_42894259_42894340	0.255297	AUGGCAC	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr4_-_34634507_34634712	0.241363	AUGGCAC	Z71268|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1	BC012252|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1	AK144170|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1	NM_011895|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1
mm9_v1_chr15_+_80629020_80629144	0.234977	AUGGCAC	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr16_+_8830175_8830249	0.231255	AUGGCAC	AK007485|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	NM_001081400|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116778|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116780|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene
mm9_v1_chr12_-_8506790_8506819	0.222141	AUGGCAC	BC018275|Rhob|11852|ras homolog gene family, member B	NM_007483|Rhob|11852|ras homolog gene family, member B	BC110992|Rhob|11852|ras homolog gene family, member B	AK167917|Rhob|11852|ras homolog gene family, member B	AK086873|Rhob|11852|ras homolog gene family, member B	AK164518|Rhob|11852|ras homolog gene family, member B
mm9_v1_chr17_-_64681166_64681295	0.220448	AUGGCAC	AK122282|Pja2|224938|praja 2, RING-H2 motif containing	AK168371|Pja2|224938|praja 2, RING-H2 motif containing	AK144586|Pja2|224938|praja 2, RING-H2 motif containing	NM_001025309|Pja2|224938|praja 2, RING-H2 motif containing	NM_144859|Pja2|224938|praja 2, RING-H2 motif containing	AK164025|Pja2|224938|praja 2, RING-H2 motif containing	AF493070|Pja2|224938|praja 2, RING-H2 motif containing
mm9_v1_chr18_-_74224541_74224647	0.210681	AUGGCAC	AK157930|Mapk4|225724|mitogen-activated protein kinase 4	AK046051|Mapk4|225724|mitogen-activated protein kinase 4	AK079654|Mapk4|225724|mitogen-activated protein kinase 4	NM_172632|Mapk4|225724|mitogen-activated protein kinase 4
mm9_v1_chr1_+_168931547_168931719	0.205682	AUGGCAC	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chrX_-_71330931_71331012	0.204374	AUGGCAC	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr12_+_71926429_71926675	0.201139	AUGGCAC	BC053929|Frmd6|319710|FERM domain containing 6	NM_028127|Frmd6|319710|FERM domain containing 6	AK054457|Frmd6|319710|FERM domain containing 6
mm9_v1_chr5_+_28397902_28397951	0.198507	AUGGCAC	AK135941|Insig1|231070|insulin induced gene 1	AK135989|Insig1|231070|insulin induced gene 1	AK139913|Insig1|231070|insulin induced gene 1	AK151186|Insig1|231070|insulin induced gene 1	AK088380|Insig1|231070|insulin induced gene 1	AF527630|Insig1|231070|insulin induced gene 1	BC132167|Insig1|231070|insulin induced gene 1	BC132499|Insig1|231070|insulin induced gene 1	BC079559|Insig1|231070|insulin induced gene 1	NM_153526|Insig1|231070|insulin induced gene 1
mm9_v1_chr18_+_37880036_37880207	0.198106	AUGGCAC	AK083581|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	BC138701|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	AY013806|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	NM_033576|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chrX_+_165233030_165233030	0.189136	AUGGCAC	AK164501|Arhgap6|11856|Rho GTPase activating protein 6	AK171677|Arhgap6|11856|Rho GTPase activating protein 6	NM_009707|Arhgap6|11856|Rho GTPase activating protein 6
mm9_v1_chr11_-_96685326_96685440	0.18579	AUGGCAC	AK148471|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130453|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130454|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130451|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130452|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr9_+_77961044_77961183	0.180923	AUGGCAC	NM_019987|Ick|56542|intestinal cell kinase	AK045950|Ick|56542|intestinal cell kinase	AK164613|Ick|56542|intestinal cell kinase	AK008991|Ick|56542|intestinal cell kinase	AK133537|Ick|56542|intestinal cell kinase	AK087484|Ick|56542|intestinal cell kinase
mm9_v1_chr7_-_88599560_88599643	0.175493	AUGGCAC	BC125476|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	BC144948|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	NM_007755|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	Y08260|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	AK136088|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1
mm9_v1_chr7_+_16715637_16715696	0.17545	AUGGCAC	BC058704|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	NM_148946|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	BC080277|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2
mm9_v1_chr10_-_26094990_26095024	0.15952	AUGGCAC	AK045667|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	NM_172787|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK049597|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr11_+_53164267_53164268	0.157702	AUGGCAC	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr12_-_80397239_80397289	0.156574	AUGGCAC	AK220333|Zfyve26|211978|zinc finger, FYVE domain containing 26	BC141359|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK132344|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK041668|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK135518|Zfyve26|211978|zinc finger, FYVE domain containing 26	NM_001008550|Zfyve26|211978|zinc finger, FYVE domain containing 26
mm9_v1_chr9_+_25060152_25060278	0.153933	AUGGCAC	NM_009859|Sept7|235072|septin 7	BC058587|Sept7|235072|septin 7	AK141572|Sept7|235072|septin 7	AK147986|Sept7|235072|septin 7	AK088997|Sept7|235072|septin 7	AK144127|Sept7|235072|septin 7	AK220447|Sept7|235072|septin 7
mm9_v1_chr1_+_140860285_140860402	0.149524	AUGGCAC	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr4_+_32504409_32504501	0.135033	AUGGCAC	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr18_+_37906739_37906841	0.124774	AUGGCAC	AY013793|Pcdhga10|93722|protocadherin gamma subfamily A, 10	NM_033593|Pcdhga10|93722|protocadherin gamma subfamily A, 10
mm9_v1_chr2_+_76513326_76513402	0.117816	AUGGCAC	BC031110|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	NM_031256|Plekha3|83435|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm9_v1_chr9_-_65675327_65675370	0.1161	AUGGCAC	BC016271|Zfp609|214812|zinc finger protein 609	NM_172536|Zfp609|214812|zinc finger protein 609
mm9_v1_chr13_+_67033746_67033766	0.114917	AUGGCAC	AK085857|Ptdss1|19210|phosphatidylserine synthase 1	NM_008959|Ptdss1|19210|phosphatidylserine synthase 1
mm9_v1_chr16_+_13256573_13256634	0.111121	AUGGCAC	NM_001122667|Mkl2|239719|MKL/myocardin-like 2	X66901|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr14_-_67627598_67627723	0.105338	AUGGCAC	AK220143|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC049081|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK139950|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK004667|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	BC085237|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK018668|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK155040|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AY057069|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK013467|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK007920|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AF067395|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK168482|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	AK169391|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like	NM_009761|Bnip3l|12177|BCL2/adenovirus E1B interacting protein 3-like
mm9_v1_chr14_+_60884038_60884171	0.101659	AUGGCAC	AK076218|Mtmr6|219135|myotubularin related protein 6	NM_144843|Mtmr6|219135|myotubularin related protein 6	BC020019|Mtmr6|219135|myotubularin related protein 6	AK154859|Mtmr6|219135|myotubularin related protein 6
mm9_v1_chr9_-_71959599_71959699	0.0958369	AUGGCAC	M97635|Tcf12|21406|transcription factor 12	BC037097|Tcf12|21406|transcription factor 12	AK143246|Tcf12|21406|transcription factor 12	NM_011544|Tcf12|21406|transcription factor 12	AK169800|Tcf12|21406|transcription factor 12
mm9_v1_chr18_+_37874471_37874595	0.0913234	AUGGCAC	AK034910|Pcdhga7|93715|protocadherin gamma subfamily A, 7	BC077712|Pcdhga7|93715|protocadherin gamma subfamily A, 7	NM_033590|Pcdhga7|93715|protocadherin gamma subfamily A, 7	AY013801|Pcdhga7|93715|protocadherin gamma subfamily A, 7
mm9_v1_chr19_-_7416286_7416363	0.0907362	AUGGCAC	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr8_+_129823507_129823551	0.0833772	AUGGCAC	AY856081|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY856082|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001013581|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001013580|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr10_+_61143056_61143106	0.0823536	AUGGCAC	AK157843|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK168175|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK159239|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	NM_009120|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	BC005549|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	L20294|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)
mm9_v1_chr10_-_114752600_114752678	0.0787323	AUGGCAC	AK172891|Rab21|216344|RAB21, member RAS oncogene family	BC055042|Rab21|216344|RAB21, member RAS oncogene family	NM_024454|Rab21|216344|RAB21, member RAS oncogene family	BC040104|Rab21|216344|RAB21, member RAS oncogene family
mm9_v1_chr11_-_116714406_116714411	0.0760934	AUGGCAC	AK165670|Srsf2|20382|serine/arginine-rich splicing factor 2	NM_011358|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr18_+_37866747_37866882	0.0728078	AUGGCAC	BC059927|Pcdhga6|93714|protocadherin gamma subfamily A, 6	BC080852|Pcdhga6|93714|protocadherin gamma subfamily A, 6	AY013800|Pcdhga6|93714|protocadherin gamma subfamily A, 6	NM_033589|Pcdhga6|93714|protocadherin gamma subfamily A, 6
mm9_v1_chr2_+_18598644_18598801	0.0717441	AUGGCAC	M64279|Bmi1|12151|Bmi1 polycomb ring finger oncogene	NM_007552|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr4_+_124479785_124479853	0.0697889	AUGGCAC	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr4_-_84320976_84320992	0.0657697	AUGGCAC	AK030323|Bnc2|242509|basonuclin 2	NM_172870|Bnc2|242509|basonuclin 2
mm9_v1_chr2_+_97307652_97307938	0.0572638	AUGGCAC	AK032467|Lrrc4c|241568|leucine rich repeat containing 4C	AK032088|Lrrc4c|241568|leucine rich repeat containing 4C	NM_178725|Lrrc4c|241568|leucine rich repeat containing 4C	BC094588|Lrrc4c|241568|leucine rich repeat containing 4C
mm9_v1_chr14_+_47502637_47502773	0.0530354	AUGGCAC	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chr2_-_33286793_33286890	0.051944	AUGGCAC	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr12_+_113960379_113960418	0.0503174	AUGGCAC	NM_001024602|AW555464|217882|expressed sequence AW555464	AK122236|AW555464|217882|expressed sequence AW555464
mm9_v1_chr1_-_82287990_82288082	0.0441383	AUGGCAC	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr1_-_162281701_162281701	0.0297475	AUGGCAC	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr8_-_108861850_108861887	0.0294653	AUGGCAC	AK087515|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK076416|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK139226|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK019476|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK162894|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	BC043077|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	NM_021491|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral
mm9_v1_chr7_-_118125571_118125608	0.0264809	AUGGCAC	AK020536|Mrvi1|17540|MRV integration site 1	AK157169|Mrvi1|17540|MRV integration site 1	NM_194464|Mrvi1|17540|MRV integration site 1
mm9_v1_chr12_+_114336416_114336628	0.0198237	AUGGCAC	BC112910|Mta1|116870|metastasis associated 1	NM_054081|Mta1|116870|metastasis associated 1	AF288137|Mta1|116870|metastasis associated 1	AF463504|Mta1|116870|metastasis associated 1
mm9_v1_chr4_+_13711928_13711928	0.0164604	AUGGCAC	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr18_+_69505374_69505487	0.0159623	AUGGCAC	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr9_-_36954858_36954932	0.0133775	AUGGCAC	NM_148950|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr4_-_152856922_152856938	0.00949031	AUGGCAC	NM_001099299|Ajap1|230959|adherens junction associated protein 1
mm9_v1_chr18_-_89063572_89063675	0.00596389	AUGGCAC	BC094443|Socs6|54607|suppressor of cytokine signaling 6	AK028701|Socs6|54607|suppressor of cytokine signaling 6	AK083341|Socs6|54607|suppressor of cytokine signaling 6	AK028665|Socs6|54607|suppressor of cytokine signaling 6	AK031164|Socs6|54607|suppressor of cytokine signaling 6	AK044946|Socs6|54607|suppressor of cytokine signaling 6	NM_018821|Socs6|54607|suppressor of cytokine signaling 6	BC085245|Socs6|54607|suppressor of cytokine signaling 6	AK031929|Socs6|54607|suppressor of cytokine signaling 6	AK019993|Socs6|54607|suppressor of cytokine signaling 6
mm9_v1_chr18_+_37896589_37896589	0.0025196	AUGGCAC	BC079567|Pcdhga9|93717|protocadherin gamma subfamily A, 9	NM_033592|Pcdhga9|93717|protocadherin gamma subfamily A, 9
