mm9_v1_chr5_-_108978950_108979047	8.73404	AUGGCUU	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr1_-_175297778_175297829	5.29295	AUGGCUU	AK036352|Cadm3|94332|cell adhesion molecule 3	AK053077|Cadm3|94332|cell adhesion molecule 3	AK038917|Cadm3|94332|cell adhesion molecule 3	NM_053199|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr13_-_52626065_52626204	4.13101	AUGGCUU	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr8_+_98226914_98226962	4.08092	AUGGCUU	NM_001195006|Ndrg4|234593|N-myc downstream regulated gene 4	NM_145602|Ndrg4|234593|N-myc downstream regulated gene 4	AK168873|Ndrg4|234593|N-myc downstream regulated gene 4	AK090374|Ndrg4|234593|N-myc downstream regulated gene 4	AK144294|Ndrg4|234593|N-myc downstream regulated gene 4	BC006595|Ndrg4|234593|N-myc downstream regulated gene 4
mm9_v1_chr13_+_54472705_54472742	4.05988	AUGGCUU	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr8_-_70342105_70342226	3.86382	AUGGCUU	BC131913|Psd3|234353|pleckstrin and Sec7 domain containing 3	BC145641|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK031477|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK147606|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_027626|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr15_-_58913543_58913652	3.69655	AUGGCUU	BC024131|Mtss1|211401|metastasis suppressor 1	AK083756|Mtss1|211401|metastasis suppressor 1	AK046628|Mtss1|211401|metastasis suppressor 1	AK129139|Mtss1|211401|metastasis suppressor 1	NM_001146180|Mtss1|211401|metastasis suppressor 1	NM_144800|Mtss1|211401|metastasis suppressor 1
mm9_v1_chr2_-_77654669_77654872	3.58164	AUGGCUU	AK079322|Zfp385b|241494|zinc finger protein 385B	AK149352|Zfp385b|241494|zinc finger protein 385B	AK046798|Zfp385b|241494|zinc finger protein 385B	NM_178723|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr4_-_86876328_86876443	3.3276	AUGGCUU	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr11_+_68902025_68902081	3.15616	AUGGCUU	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr6_-_113841356_113841375	2.69947	AUGGCUU	DQ406822|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK051287|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	BC075643|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_001036684|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr5_+_113919352_113919613	2.64456	AUGGCUU	BC096526|Wscd2|320916|WSC domain containing 2	NM_177292|Wscd2|320916|WSC domain containing 2
mm9_v1_chr6_-_113991945_113992108	2.54465	AUGGCUU	AK147240|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	DQ406821|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147369|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147501|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_009723|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr11_+_6963421_6963491	2.43509	AUGGCUU	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr8_-_17535279_17535384	2.38669	AUGGCUU	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr9_-_108092712_108092716	2.35981	AUGGCUU	NM_007567|Bsn|12217|bassoon
mm9_v1_chr10_+_7309565_7309776	2.32798	AUGGCUU	AK048919|Lrp11|237253|low density lipoprotein receptor-related protein 11	NM_172784|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK036676|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK050544|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK031994|Lrp11|237253|low density lipoprotein receptor-related protein 11	BC059874|Lrp11|237253|low density lipoprotein receptor-related protein 11
mm9_v1_chr4_-_25727109_25727390	2.25007	AUGGCUU	AK049122|Fut9|14348|fucosyltransferase 9	NM_010243|Fut9|14348|fucosyltransferase 9	AK032177|Fut9|14348|fucosyltransferase 9	AK139133|Fut9|14348|fucosyltransferase 9	AK033607|Fut9|14348|fucosyltransferase 9
mm9_v1_chr7_+_51846254_51846289	2.24727	AUGGCUU	NM_008422|Kcnc3|16504|potassium voltage gated channel, Shaw-related subfamily, member 3
mm9_v1_chr5_-_136410488_136410547	2.24477	AUGGCUU	NM_018871|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr9_+_44925922_44925963	2.21613	AUGGCUU	NM_001014761|Scn2b|72821|sodium channel, voltage-gated, type II, beta	AB118947|Scn2b|72821|sodium channel, voltage-gated, type II, beta	BC092225|Scn2b|72821|sodium channel, voltage-gated, type II, beta
mm9_v1_chr8_-_74195650_74195661	2.15671	AUGGCUU	NM_001029873|Unc13a|382018|unc-13 homolog A (C. elegans)	AK035920|Unc13a|382018|unc-13 homolog A (C. elegans)
mm9_v1_chr16_-_95219189_95219332	1.99599	AUGGCUU	U51125|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC120794|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	BC125565|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51122|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51123|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U51124|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U11859|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	U37253|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK139056|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025584|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_001025585|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	NM_010606|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6	AK044218|Kcnj6|16522|potassium inwardly-rectifying channel, subfamily J, member 6
mm9_v1_chr5_-_38550627_38550759	1.9892	AUGGCUU	AF035683|Nsg1|18196|neuron specific gene family member 1	AK144503|Nsg1|18196|neuron specific gene family member 1	BC008272|Nsg1|18196|neuron specific gene family member 1	AK078054|Nsg1|18196|neuron specific gene family member 1	AK148941|Nsg1|18196|neuron specific gene family member 1	AX775765|Nsg1|18196|neuron specific gene family member 1	NM_010942|Nsg1|18196|neuron specific gene family member 1
mm9_v1_chr13_+_41345120_41345273	1.96247	AUGGCUU	NM_001135577|BC024659|108934|cDNA sequence BC024659	BC066054|BC024659|108934|cDNA sequence BC024659	BC094222|BC024659|108934|cDNA sequence BC024659
mm9_v1_chr14_+_48740495_48740543	1.88734	AUGGCUU	AK030564|Peli2|93834|pellino 2	AK045515|Peli2|93834|pellino 2	NM_033602|Peli2|93834|pellino 2
mm9_v1_chr13_+_118391126_118391233	1.88715	AUGGCUU	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr8_-_73300496_73300620	1.87849	AUGGCUU	BC085501|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	Y13569|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	BC006796|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	AK146195|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	AK148122|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	NM_008841|Pik3r2|18709|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)
mm9_v1_chr1_-_166388431_166388540	1.8753	AUGGCUU	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr10_+_126602182_126602286	1.78353	AUGGCUU	AK144484|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC057199|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	NM_008080|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC019969|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr3_+_126299858_126299959	1.69976	AUGGCUU	AK220516|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_001025438|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_001025439|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	NM_023813|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK032524|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK042722|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK044872|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK142435|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK157736|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	AK145106|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta	BC057103|Camk2d|108058|calcium/calmodulin-dependent protein kinase II, delta
mm9_v1_chr10_-_108447674_108447736	1.65014	AUGGCUU	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr3_-_55987612_55987634	1.6335	AUGGCUU	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr1_+_193542261_193542399	1.621	AUGGCUU	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr9_+_45646611_45646685	1.61814	AUGGCUU	NM_001145947|Bace1|23821|beta-site APP cleaving enzyme 1	NM_011792|Bace1|23821|beta-site APP cleaving enzyme 1	AK033112|Bace1|23821|beta-site APP cleaving enzyme 1	AK041285|Bace1|23821|beta-site APP cleaving enzyme 1	AK080498|Bace1|23821|beta-site APP cleaving enzyme 1	AK082317|Bace1|23821|beta-site APP cleaving enzyme 1	AK163583|Bace1|23821|beta-site APP cleaving enzyme 1	AK046175|Bace1|23821|beta-site APP cleaving enzyme 1	AK082230|Bace1|23821|beta-site APP cleaving enzyme 1	AK049626|Bace1|23821|beta-site APP cleaving enzyme 1	AF190726|Bace1|23821|beta-site APP cleaving enzyme 1	AK014464|Bace1|23821|beta-site APP cleaving enzyme 1	BC048189|Bace1|23821|beta-site APP cleaving enzyme 1
mm9_v1_chr1_+_136543253_136543257	1.59992	AUGGCUU	AB036514|Syt2|20980|synaptotagmin II	AK036357|Syt2|20980|synaptotagmin II	NM_009307|Syt2|20980|synaptotagmin II
mm9_v1_chr15_-_103170514_103170552	1.57214	AUGGCUU	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr10_+_4795808_4795848	1.48251	AUGGCUU	AF535143|Syne1|64009|synaptic nuclear envelope 1	NM_153399|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr19_+_27291507_27291624	1.45959	AUGGCUU	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr9_-_99336923_99337150	1.41703	AUGGCUU	AK050469|Mras|17532|muscle and microspikes RAS	AB004879|Mras|17532|muscle and microspikes RAS	NM_008624|Mras|17532|muscle and microspikes RAS
mm9_v1_chr11_+_53333270_53333474	1.40492	AUGGCUU	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr5_+_25265761_25265876	1.38547	AUGGCUU	BC053106|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	BC082279|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	NM_001004365|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK144936|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)	AK035798|Actr3b|242894|ARP3 actin-related protein 3 homolog B (yeast)
mm9_v1_chr8_+_11758322_11758364	1.37641	AUGGCUU	NM_001113518|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	NM_017402|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	BC044838|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK052545|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AY220301|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr19_-_19185685_19185685	1.37016	AUGGCUU	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr13_-_58009653_58009693	1.36847	AUGGCUU	AK049019|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK039058|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	X92864|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK036189|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166463|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166464|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166465|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166466|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_009262|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr3_-_80717517_80717574	1.354	AUGGCUU	BC027094|Glrb|14658|glycine receptor, beta subunit	BC037605|Glrb|14658|glycine receptor, beta subunit	NM_010298|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr10_-_67011689_67011747	1.33655	AUGGCUU	BC057106|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	BC058407|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	AK155334|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	NM_001005419|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase
mm9_v1_chr3_+_89324085_89324085	1.31414	AUGGCUU	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr6_+_54631644_54631765	1.29778	AUGGCUU	BC042507|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	BC052467|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019120|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019128|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK043452|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	NM_026629|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene
mm9_v1_chr14_+_66963139_66963219	1.28565	AUGGCUU	BC014707|Stmn4|56471|stathmin-like 4	BC046752|Stmn4|56471|stathmin-like 4	NM_019675|Stmn4|56471|stathmin-like 4
mm9_v1_chr14_-_103381744_103381856	1.2853	AUGGCUU	BC116647|Kctd12|239217|potassium channel tetramerisation domain containing 12	BC116648|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK035535|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK172581|Kctd12|239217|potassium channel tetramerisation domain containing 12	NM_177715|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK087895|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr11_-_119409041_119409133	1.28492	AUGGCUU	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr19_-_32462926_32462979	1.2479	AUGGCUU	AK151170|Sgms1|208449|sphingomyelin synthase 1	AK153406|Sgms1|208449|sphingomyelin synthase 1	AK146782|Sgms1|208449|sphingomyelin synthase 1	AY509044|Sgms1|208449|sphingomyelin synthase 1	NM_144792|Sgms1|208449|sphingomyelin synthase 1
mm9_v1_chr17_+_88840048_88840164	1.23618	AUGGCUU	NM_180974|Foxn2|14236|forkhead box N2	AK154401|Foxn2|14236|forkhead box N2	AK030735|Foxn2|14236|forkhead box N2	AK031639|Foxn2|14236|forkhead box N2	BC138824|Foxn2|14236|forkhead box N2	BC138825|Foxn2|14236|forkhead box N2
mm9_v1_chr9_+_59598963_59599005	1.13131	AUGGCUU	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr12_-_86311718_86311851	1.11727	AUGGCUU	BC057351|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	BC079590|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147878|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK154529|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147491|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	NM_178065|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene
mm9_v1_chrX_+_7455387_7455511	1.07373	AUGGCUU	AK043570|Pim2|18715|proviral integration site 2	L41495|Pim2|18715|proviral integration site 2	NM_138606|Pim2|18715|proviral integration site 2	BC027376|Pim2|18715|proviral integration site 2
mm9_v1_chr19_+_43764161_43764183	1.04479	AUGGCUU	AK170546|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	NM_053103|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr11_+_120094240_120094260	1.0441	AUGGCUU	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr3_-_9610062_9610137	1.005	AUGGCUU	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr4_-_128483355_128483429	0.987137	AUGGCUU	NM_001081098|Zfp362|230761|zinc finger protein 362
mm9_v1_chr6_+_117118552_117118673	0.983837	AUGGCUU	NM_001012477|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_013655|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_021704|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK157553|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK045092|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK075596|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43804|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43805|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12029|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12030|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC046827|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC006640|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC020297|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC029335|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D21072|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	S74318|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	CT010389|Cxcl12|20315|chemokine (C-X-C motif) ligand 12
mm9_v1_chr14_+_69955194_69955282	0.977975	AUGGCUU	NM_026174|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK045342|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK004761|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK042053|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC052090|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC043134|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4
mm9_v1_chr8_-_127187268_127187334	0.972465	AUGGCUU	BC058626|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	NM_175149|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr9_+_21001148_21001171	0.966475	AUGGCUU	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr14_+_120877548_120877707	0.953625	AUGGCUU	AK140318|Rap2a|76108|RAS related protein 2a	BC067194|Rap2a|76108|RAS related protein 2a	BC049084|Rap2a|76108|RAS related protein 2a	BC053003|Rap2a|76108|RAS related protein 2a	NM_029519|Rap2a|76108|RAS related protein 2a	AK018024|Rap2a|76108|RAS related protein 2a
mm9_v1_chr6_-_56312170_56312512	0.952118	AUGGCUU	AK082497|Pde1c|18575|phosphodiesterase 1C	BC032277|Pde1c|18575|phosphodiesterase 1C	AK139923|Pde1c|18575|phosphodiesterase 1C	AK017183|Pde1c|18575|phosphodiesterase 1C	AK082180|Pde1c|18575|phosphodiesterase 1C	AK030423|Pde1c|18575|phosphodiesterase 1C	NM_001025568|Pde1c|18575|phosphodiesterase 1C	NM_001159952|Pde1c|18575|phosphodiesterase 1C	NM_001159953|Pde1c|18575|phosphodiesterase 1C	L76946|Pde1c|18575|phosphodiesterase 1C	NM_011054|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr14_+_18493380_18493473	0.946463	AUGGCUU	AK158826|Thrb|21834|thyroid hormone receptor beta	NM_001113417|Thrb|21834|thyroid hormone receptor beta
mm9_v1_chr1_+_37356722_37356738	0.941627	AUGGCUU	AK162581|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_030266|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr15_-_81846328_81846578	0.932026	AUGGCUU	AK189878|Pppde2|28075|PPPDE peptidase domain containing 2	BC071205|Pppde2|28075|PPPDE peptidase domain containing 2	BC131979|Pppde2|28075|PPPDE peptidase domain containing 2	BC132642|Pppde2|28075|PPPDE peptidase domain containing 2	BC145235|Pppde2|28075|PPPDE peptidase domain containing 2	AK016347|Pppde2|28075|PPPDE peptidase domain containing 2	AK131703|Pppde2|28075|PPPDE peptidase domain containing 2	AK005963|Pppde2|28075|PPPDE peptidase domain containing 2	AK005706|Pppde2|28075|PPPDE peptidase domain containing 2	BC056972|Pppde2|28075|PPPDE peptidase domain containing 2	NM_134095|Pppde2|28075|PPPDE peptidase domain containing 2
mm9_v1_chrX_+_70918446_70918580	0.926556	AUGGCUU	NM_001142809|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	NM_001142810|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	NM_133987|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	AF459435|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	BC141067|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	BC145319|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm9_v1_chr2_-_167318313_167318390	0.923564	AUGGCUU	AK051741|Spata2|263876|spermatogenesis associated 2	AK144826|Spata2|263876|spermatogenesis associated 2	AK171240|Spata2|263876|spermatogenesis associated 2	AK171664|Spata2|263876|spermatogenesis associated 2	AK171852|Spata2|263876|spermatogenesis associated 2	BC034597|Spata2|263876|spermatogenesis associated 2	AK156188|Spata2|263876|spermatogenesis associated 2	AK170356|Spata2|263876|spermatogenesis associated 2	AK162743|Spata2|263876|spermatogenesis associated 2	NM_170756|Spata2|263876|spermatogenesis associated 2
mm9_v1_chr10_-_80306743_80306828	0.911623	AUGGCUU	BC072620|Lingo3|237403|leucine rich repeat and Ig domain containing 3	NM_001013758|Lingo3|237403|leucine rich repeat and Ig domain containing 3
mm9_v1_chr18_+_23573908_23573935	0.905744	AUGGCUU	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr2_+_4073908_4073934	0.899843	AUGGCUU	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr11_-_107331865_107332065	0.898133	AUGGCUU	BC082333|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	BC108351|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AB077281|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK153625|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171918|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK172137|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	NM_145823|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1	AK171340|Pitpnc1|71795|phosphatidylinositol transfer protein, cytoplasmic 1
mm9_v1_chr3_-_50247306_50247534	0.89757	AUGGCUU	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr3_+_96361879_96362304	0.888649	AUGGCUU	AK089304|Txnip|56338|thioredoxin interacting protein	AK089403|Txnip|56338|thioredoxin interacting protein	NM_001009935|Txnip|56338|thioredoxin interacting protein	NM_023719|Txnip|56338|thioredoxin interacting protein	AK004653|Txnip|56338|thioredoxin interacting protein	AK082476|Txnip|56338|thioredoxin interacting protein	AK088870|Txnip|56338|thioredoxin interacting protein	AK089351|Txnip|56338|thioredoxin interacting protein	AK155517|Txnip|56338|thioredoxin interacting protein	AK171205|Txnip|56338|thioredoxin interacting protein	AK171312|Txnip|56338|thioredoxin interacting protein	AK171425|Txnip|56338|thioredoxin interacting protein	AK171456|Txnip|56338|thioredoxin interacting protein	AK171464|Txnip|56338|thioredoxin interacting protein	AK171527|Txnip|56338|thioredoxin interacting protein	BC031850|Txnip|56338|thioredoxin interacting protein	BC011212|Txnip|56338|thioredoxin interacting protein	AK187108|Txnip|56338|thioredoxin interacting protein	AF173681|Txnip|56338|thioredoxin interacting protein	AF282826|Txnip|56338|thioredoxin interacting protein	AK192038|Txnip|56338|thioredoxin interacting protein	AK214578|Txnip|56338|thioredoxin interacting protein
mm9_v1_chr7_-_71083734_71083823	0.88555	AUGGCUU	AJ245644|Klf13|50794|Kruppel-like factor 13	AJ275987|Klf13|50794|Kruppel-like factor 13	BC051557|Klf13|50794|Kruppel-like factor 13	AK155298|Klf13|50794|Kruppel-like factor 13	AF251796|Klf13|50794|Kruppel-like factor 13	NM_021366|Klf13|50794|Kruppel-like factor 13
mm9_v1_chr6_+_55401971_55401981	0.878164	AUGGCUU	AK083108|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_001025372|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_007407|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	AK042820|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr3_-_59147980_59148315	0.859813	AUGGCUU	AK132367|Igsf10|242050|immunoglobulin superfamily, member 10	NM_001162884|Igsf10|242050|immunoglobulin superfamily, member 10	AK143421|Igsf10|242050|immunoglobulin superfamily, member 10
mm9_v1_chr8_-_128422192_128422192	0.851676	AUGGCUU	BC068235|Pcnxl2|270109|pecanex-like 2 (Drosophila)	NM_175561|Pcnxl2|270109|pecanex-like 2 (Drosophila)
mm9_v1_chr1_+_34858544_34858609	0.846832	AUGGCUU	AK169957|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	NM_183019|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	BC139371|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	BC139397|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK031310|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK163424|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK169449|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK034013|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	AK134629|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4	BC055804|Arhgef4|226970|Rho guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr10_-_92773778_92773948	0.812412	AUGGCUU	Z32815|Elk3|13713|ELK3, member of ETS oncogene family	L19953|Elk3|13713|ELK3, member of ETS oncogene family	BC005686|Elk3|13713|ELK3, member of ETS oncogene family	NM_013508|Elk3|13713|ELK3, member of ETS oncogene family
mm9_v1_chr4_+_128814102_128814307	0.810299	AUGGCUU	AK005096|Fndc5|384061|fibronectin type III domain containing 5	AJ401376|Fndc5|384061|fibronectin type III domain containing 5	BC109184|Fndc5|384061|fibronectin type III domain containing 5	NM_027402|Fndc5|384061|fibronectin type III domain containing 5	BC109183|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr15_+_100592177_100592343	0.808513	AUGGCUU	AK034237|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	NM_021530|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK083945|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK050563|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK039404|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	BC030388|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AF224508|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK173014|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8
mm9_v1_chr7_+_25266986_25267120	0.794919	AUGGCUU	AK143204|Cadm4|260299|cell adhesion molecule 4	NM_153112|Cadm4|260299|cell adhesion molecule 4	AY059394|Cadm4|260299|cell adhesion molecule 4
mm9_v1_chr17_-_24787217_24787278	0.793152	AUGGCUU	AB026489|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	BC070458|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK169007|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK170057|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK039491|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK004710|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075800|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK075813|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK084801|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023055|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr1_+_153602492_153602592	0.771688	AUGGCUU	AB188342|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	NM_001039644|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK141326|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK143252|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138658|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138659|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145357|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145358|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3
mm9_v1_chr3_+_115711207_115711327	0.770282	AUGGCUU	NM_001163514|Extl2|58193|exostoses (multiple)-like 2	AF200973|Extl2|58193|exostoses (multiple)-like 2	AK019370|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr2_+_163264188_163264268	0.76971	AUGGCUU	NM_144891|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK164991|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK140488|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	AK141371|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1	BC019941|Gdap1l1|228858|ganglioside-induced differentiation-associated protein 1-like 1
mm9_v1_chr15_+_41278949_41279049	0.766517	AUGGCUU	NM_001130166|Oxr1|170719|oxidation resistance 1	AK158703|Oxr1|170719|oxidation resistance 1
mm9_v1_chr7_+_51639464_51639527	0.750571	AUGGCUU	NM_001114116|Syt3|20981|synaptotagmin III	NM_016663|Syt3|20981|synaptotagmin III
mm9_v1_chr17_+_29405732_29405781	0.72747	AUGGCUU	NM_030561|BC004004|80748|cDNA sequence BC004004
mm9_v1_chr3_-_116510948_116511083	0.720143	AUGGCUU	AK087855|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK041661|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	AK036225|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase	NM_001081326|Agl|77559|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm9_v1_chrX_+_148578716_148578819	0.719014	AUGGCUU	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr11_-_109334465_109334613	0.69136	AUGGCUU	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr2_-_154233754_154233847	0.689814	AUGGCUU	BC018546|Snta1|20648|syntrophin, acidic 1	U00677|Snta1|20648|syntrophin, acidic 1	AK137379|Snta1|20648|syntrophin, acidic 1	NM_009228|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr9_+_122026378_122026421	0.676833	AUGGCUU	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr4_-_9570815_9570863	0.657519	AUGGCUU	AF302654|Asph|65973|aspartate-beta-hydroxylase	AF289490|Asph|65973|aspartate-beta-hydroxylase	AF289491|Asph|65973|aspartate-beta-hydroxylase	AF289492|Asph|65973|aspartate-beta-hydroxylase	AF221854|Asph|65973|aspartate-beta-hydroxylase	AF223413|Asph|65973|aspartate-beta-hydroxylase	NM_001177852|Asph|65973|aspartate-beta-hydroxylase	NM_001177853|Asph|65973|aspartate-beta-hydroxylase	NM_001177854|Asph|65973|aspartate-beta-hydroxylase	NM_133723|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr7_-_82453216_82453273	0.648514	AUGGCUU	AK147261|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_001109753|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr2_-_167486889_167487105	0.627693	AUGGCUU	AK151326|Tmem189|407243|transmembrane protein 189	BC002270|Tmem189|407243|transmembrane protein 189	NM_145538|Tmem189|407243|transmembrane protein 189	AK151705|Tmem189|407243|transmembrane protein 189	AK170042|Tmem189|407243|transmembrane protein 189	AK088196|Tmem189|407243|transmembrane protein 189
mm9_v1_chr8_+_87561055_87561132	0.626435	AUGGCUU	NM_001122843|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	BC003275|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr19_-_5106937_5107039	0.615903	AUGGCUU	AB232584|Rab1b|76308|RAB1B, member RAS oncogene family	BC016408|Rab1b|76308|RAB1B, member RAS oncogene family	AK003609|Rab1b|76308|RAB1B, member RAS oncogene family	NM_029576|Rab1b|76308|RAB1B, member RAS oncogene family	AK042020|Rab1b|76308|RAB1B, member RAS oncogene family	AK156726|Rab1b|76308|RAB1B, member RAS oncogene family
mm9_v1_chr10_-_126648509_126648683	0.605655	AUGGCUU	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr4_-_141346551_141346594	0.59826	AUGGCUU	AK051048|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	NM_172338|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK028692|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK164023|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16	AK154946|Dnajc16|214063|DnaJ (Hsp40) homolog, subfamily C, member 16
mm9_v1_chr14_-_31166671_31166671	0.5959	AUGGCUU	AK147415|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_001083616|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr18_+_23962468_23962588	0.59575	AUGGCUU	NM_153058|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK038562|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK140595|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK040767|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045904|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148954|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046221|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC027056|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC035254|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC025804|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK050527|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK148480|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK046095|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK088734|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	BC028987|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK045493|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr19_+_10763197_10763304	0.594649	AUGGCUU	AK158833|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK159309|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK165826|Vps37c|107305|vacuolar protein sorting 37C (yeast)	AK150606|Vps37c|107305|vacuolar protein sorting 37C (yeast)	BC025865|Vps37c|107305|vacuolar protein sorting 37C (yeast)	NM_181403|Vps37c|107305|vacuolar protein sorting 37C (yeast)
mm9_v1_chr3_-_51364525_51364799	0.592611	AUGGCUU	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr11_+_74433092_74433113	0.590918	AUGGCUU	AK143211|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene	NM_001013784|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene
mm9_v1_chrX_-_20527674_20527737	0.587317	AUGGCUU	BC054474|Elk1|13712|ELK1, member of ETS oncogene family	AK132354|Elk1|13712|ELK1, member of ETS oncogene family	NM_007922|Elk1|13712|ELK1, member of ETS oncogene family	AK082260|Elk1|13712|ELK1, member of ETS oncogene family
mm9_v1_chr8_+_36650839_36650928	0.584071	AUGGCUU	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr2_-_136213509_136213702	0.579346	AUGGCUU	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chr19_+_46471385_46471515	0.574147	AUGGCUU	AJ131692|Sufu|24069|suppressor of fused homolog (Drosophila)	AK016976|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_001025391|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_015752|Sufu|24069|suppressor of fused homolog (Drosophila)	BC048168|Sufu|24069|suppressor of fused homolog (Drosophila)	BC056997|Sufu|24069|suppressor of fused homolog (Drosophila)	AK156410|Sufu|24069|suppressor of fused homolog (Drosophila)	AF134893|Sufu|24069|suppressor of fused homolog (Drosophila)	AJ308626|Sufu|24069|suppressor of fused homolog (Drosophila)	AK015885|Sufu|24069|suppressor of fused homolog (Drosophila)	AK047603|Sufu|24069|suppressor of fused homolog (Drosophila)
mm9_v1_chr14_-_65568677_65568719	0.573197	AUGGCUU	AK089782|Hmbox1|219150|homeobox containing 1	AK161592|Hmbox1|219150|homeobox containing 1	NM_177338|Hmbox1|219150|homeobox containing 1	BC051457|Hmbox1|219150|homeobox containing 1	AK052729|Hmbox1|219150|homeobox containing 1
mm9_v1_chr2_-_122528199_122528447	0.565637	AUGGCUU	AF003747|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	BC117997|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	AK134245|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	AK166106|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	NM_011774|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4
mm9_v1_chr2_-_167174531_167174736	0.564519	AUGGCUU	AF142673|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	NM_019835|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	AB004786|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
mm9_v1_chr17_+_25945986_25946050	0.562195	AUGGCUU	NM_001164225|Fbxl16|214931|F-box and leucine-rich repeat protein 16
mm9_v1_chr19_+_38339167_38339370	0.560322	AUGGCUU	AK045443|Lgi1|56839|leucine-rich repeat LGI family, member 1	BC066090|Lgi1|56839|leucine-rich repeat LGI family, member 1	NM_020278|Lgi1|56839|leucine-rich repeat LGI family, member 1	AF246818|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK035873|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK031996|Lgi1|56839|leucine-rich repeat LGI family, member 1
mm9_v1_chr8_-_70498472_70498472	0.55438	AUGGCUU	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr10_-_80039973_80040065	0.553128	AUGGCUU	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chr13_-_114408704_114408818	0.54097	AUGGCUU	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chrX_-_140367467_140367853	0.524458	AUGGCUU	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr7_+_104728398_104728430	0.523179	AUGGCUU	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr5_-_143942408_143942453	0.52211	AUGGCUU	AF226870|Rbak|57782|RB-associated KRAB repressor	NM_001045482|Rbak|57782|RB-associated KRAB repressor	NM_021326|Rbak|57782|RB-associated KRAB repressor	AK051009|Rbak|57782|RB-associated KRAB repressor
mm9_v1_chr6_-_83522410_83522497	0.517746	AUGGCUU	AK136961|Stambp|70527|STAM binding protein	AK220541|Stambp|70527|STAM binding protein	BC006939|Stambp|70527|STAM binding protein	BC003497|Stambp|70527|STAM binding protein	BC025111|Stambp|70527|STAM binding protein	AB010123|Stambp|70527|STAM binding protein	AK019907|Stambp|70527|STAM binding protein	AK046995|Stambp|70527|STAM binding protein	AK017600|Stambp|70527|STAM binding protein	AK168810|Stambp|70527|STAM binding protein	AK139391|Stambp|70527|STAM binding protein	NM_024239|Stambp|70527|STAM binding protein
mm9_v1_chr16_-_35769389_35769480	0.515761	AUGGCUU	BC037460|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK034214|Dirc2|224132|disrupted in renal carcinoma 2 (human)	NM_153550|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK172331|Dirc2|224132|disrupted in renal carcinoma 2 (human)
mm9_v1_chr5_+_130924661_130924722	0.5076	AUGGCUU	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr6_+_30351902_30351953	0.506335	AUGGCUU	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chrX_-_72823345_72823551	0.502557	AUGGCUU	AB232636|Rab39b|67790|RAB39B, member RAS oncogene family	BC052472|Rab39b|67790|RAB39B, member RAS oncogene family	AK039013|Rab39b|67790|RAB39B, member RAS oncogene family	AK048981|Rab39b|67790|RAB39B, member RAS oncogene family	AK160737|Rab39b|67790|RAB39B, member RAS oncogene family	NM_175122|Rab39b|67790|RAB39B, member RAS oncogene family	AK018257|Rab39b|67790|RAB39B, member RAS oncogene family	AK020665|Rab39b|67790|RAB39B, member RAS oncogene family
mm9_v1_chr8_-_42127242_42127289	0.496793	AUGGCUU	AK030510|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005865|Mtus1|102103|mitochondrial tumor suppressor 1	AY626781|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr11_+_67399999_67400271	0.492173	AUGGCUU	AK031455|Gas7|14457|growth arrest specific 7	NM_001109657|Gas7|14457|growth arrest specific 7	AK154463|Gas7|14457|growth arrest specific 7	AK017394|Gas7|14457|growth arrest specific 7
mm9_v1_chr5_-_20457608_20457646	0.488596	AUGGCUU	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chr7_-_28231535_28231646	0.486951	AUGGCUU	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr6_-_126690651_126690691	0.481936	AUGGCUU	NM_013568|Kcna6|16494|potassium voltage-gated channel, shaker-related, subfamily, member 6
mm9_v1_chr10_+_79179326_79179429	0.478146	AUGGCUU	AJ225122|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	NM_008226|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	AB154248|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2
mm9_v1_chr4_-_100937800_100937898	0.472243	AUGGCUU	AK133866|Jak1|16451|Janus kinase 1	AK141210|Jak1|16451|Janus kinase 1	AK134143|Jak1|16451|Janus kinase 1	AK143650|Jak1|16451|Janus kinase 1	S63728|Jak1|16451|Janus kinase 1	BC039752|Jak1|16451|Janus kinase 1	AK152128|Jak1|16451|Janus kinase 1	AK148521|Jak1|16451|Janus kinase 1	AK081552|Jak1|16451|Janus kinase 1	NM_146145|Jak1|16451|Janus kinase 1
mm9_v1_chr6_+_72297294_72297363	0.467519	AUGGCUU	AK085662|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	NM_026696|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC064080|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK013079|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC066053|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117811|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	BC117812|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene	AK002701|0610030E20Rik|68364|RIKEN cDNA 0610030E20 gene
mm9_v1_chr7_+_19576593_19576667	0.465107	AUGGCUU	NM_145579|Mypop|232934|Myb-related transcription factor, partner of profilin	M82902|Mypop|232934|Myb-related transcription factor, partner of profilin	AF364868|Mypop|232934|Myb-related transcription factor, partner of profilin
mm9_v1_chr18_+_21159829_21159841	0.46503	AUGGCUU	AB025010|Rnf138|56515|ring finger protein 138	AB025011|Rnf138|56515|ring finger protein 138	NM_019706|Rnf138|56515|ring finger protein 138	NM_207623|Rnf138|56515|ring finger protein 138
mm9_v1_chr1_+_167693876_167693939	0.462269	AUGGCUU	AK005388|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AK010947|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AK144101|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AF084524|Creg1|433375|cellular repressor of E1A-stimulated genes 1	BC027426|Creg1|433375|cellular repressor of E1A-stimulated genes 1	NM_011804|Creg1|433375|cellular repressor of E1A-stimulated genes 1	AK150006|Creg1|433375|cellular repressor of E1A-stimulated genes 1
mm9_v1_chr4_-_41516463_41516600	0.452887	AUGGCUU	BC147810|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147808|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147834|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC147836|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172167|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	BC172173|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK009522|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	AK134737|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_001159583|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene	NM_027993|2310028H24Rik|71901|RIKEN cDNA 2310028H24 gene
mm9_v1_chr8_+_87560809_87560830	0.451453	AUGGCUU	AK154985|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	AK155760|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	NM_145390|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr13_-_54712629_54712744	0.445335	AUGGCUU	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr17_+_29169579_29169604	0.441885	AUGGCUU	NM_013663|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr13_+_113078658_113078796	0.437257	AUGGCUU	AK039553|Ankrd55|77318|ankyrin repeat domain 55	NM_001168403|Ankrd55|77318|ankyrin repeat domain 55	NM_001168405|Ankrd55|77318|ankyrin repeat domain 55	NM_029898|Ankrd55|77318|ankyrin repeat domain 55	AK081197|Ankrd55|77318|ankyrin repeat domain 55	NM_001168404|Ankrd55|77318|ankyrin repeat domain 55	AK140417|Ankrd55|77318|ankyrin repeat domain 55
mm9_v1_chr14_-_47441795_47441916	0.434059	AUGGCUU	AB001732|Gmfb|63985|glia maturation factor, beta	BC040233|Gmfb|63985|glia maturation factor, beta	AB050013|Gmfb|63985|glia maturation factor, beta	BC049134|Gmfb|63985|glia maturation factor, beta	AK013970|Gmfb|63985|glia maturation factor, beta	AK013947|Gmfb|63985|glia maturation factor, beta	AF297220|Gmfb|63985|glia maturation factor, beta	AK142014|Gmfb|63985|glia maturation factor, beta	NM_022023|Gmfb|63985|glia maturation factor, beta
mm9_v1_chr9_+_109834266_109834307	0.433508	AUGGCUU	NM_008633|Mtap4|17758|microtubule-associated protein 4	AK046825|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr3_+_88425294_88425344	0.432145	AUGGCUU	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr2_+_158235580_158235588	0.431752	AUGGCUU	NM_177658|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr9_-_62996767_62996767	0.427603	AUGGCUU	AK029916|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163758|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr18_+_7869164_7869355	0.42376	AUGGCUU	NM_001146298|Wac|225131|WW domain containing adaptor with coiled-coil	NM_153085|Wac|225131|WW domain containing adaptor with coiled-coil	BC080851|Wac|225131|WW domain containing adaptor with coiled-coil
mm9_v1_chr1_+_187028043_187028086	0.415273	AUGGCUU	NM_001163754|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2	AK157509|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2
mm9_v1_chr12_-_4484059_4484074	0.412187	AUGGCUU	NM_010881|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr6_-_18464792_18464824	0.411514	AUGGCUU	AK028980|Cttnbp2|30785|cortactin binding protein 2	AK019384|Cttnbp2|30785|cortactin binding protein 2	BC141407|Cttnbp2|30785|cortactin binding protein 2	NM_080285|Cttnbp2|30785|cortactin binding protein 2
mm9_v1_chr18_-_61336629_61336741	0.409159	AUGGCUU	BC079580|Hmgxb3|106894|HMG box domain containing 3	AK088852|Hmgxb3|106894|HMG box domain containing 3	AK034086|Hmgxb3|106894|HMG box domain containing 3	AK041866|Hmgxb3|106894|HMG box domain containing 3	AK144993|Hmgxb3|106894|HMG box domain containing 3	NM_178277|Hmgxb3|106894|HMG box domain containing 3	AB045322|Hmgxb3|106894|HMG box domain containing 3	NM_134134|Hmgxb3|106894|HMG box domain containing 3
mm9_v1_chr10_-_85961630_85961659	0.404031	AUGGCUU	AK043854|Syn3|27204|synapsin III	AK087342|Syn3|27204|synapsin III	NM_001164495|Syn3|27204|synapsin III	NM_013722|Syn3|27204|synapsin III
mm9_v1_chr4_-_132768403_132768450	0.403579	AUGGCUU	AK140464|Gpr3|14748|G-protein coupled receptor 3	AK158917|Gpr3|14748|G-protein coupled receptor 3	AK140302|Gpr3|14748|G-protein coupled receptor 3	NM_008154|Gpr3|14748|G-protein coupled receptor 3
mm9_v1_chr8_-_42140113_42140147	0.403326	AUGGCUU	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr8_-_112132522_112132608	0.403179	AUGGCUU	AK013102|Dhodh|56749|dihydroorotate dehydrogenase	BC027829|Dhodh|56749|dihydroorotate dehydrogenase	BC045206|Dhodh|56749|dihydroorotate dehydrogenase	NM_020046|Dhodh|56749|dihydroorotate dehydrogenase
mm9_v1_chr7_+_28964486_28964515	0.403112	AUGGCUU	BC019545|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_001037957|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_010092|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	Y18280|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm9_v1_chr3_-_81949667_81949798	0.396383	AUGGCUU	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr10_+_82448214_82448242	0.387753	AUGGCUU	NM_021439|Chst11|58250|carbohydrate sulfotransferase 11	AJ289133|Chst11|58250|carbohydrate sulfotransferase 11
mm9_v1_chr7_+_127821093_127821157	0.384613	AUGGCUU	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chr2_-_77541328_77541435	0.383993	AUGGCUU	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr3_+_115710360_115710449	0.378055	AUGGCUU	NM_001163515|Extl2|58193|exostoses (multiple)-like 2	NM_021388|Extl2|58193|exostoses (multiple)-like 2	AK159281|Extl2|58193|exostoses (multiple)-like 2	AK028677|Extl2|58193|exostoses (multiple)-like 2	AK161866|Extl2|58193|exostoses (multiple)-like 2	BC031438|Extl2|58193|exostoses (multiple)-like 2
mm9_v1_chr1_-_156573049_156573160	0.376744	AUGGCUU	NM_009782|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit	BC150750|Cacna1e|12290|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm9_v1_chr5_+_130845319_130845359	0.370997	AUGGCUU	NM_181045|Caln1|140904|calneuron 1	AF282251|Caln1|140904|calneuron 1	AK035865|Caln1|140904|calneuron 1
mm9_v1_chr11_+_116976475_116976498	0.370684	AUGGCUU	AK047396|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166506|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166507|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_028777|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)
mm9_v1_chr4_-_53172748_53172872	0.369689	AUGGCUU	AK051920|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1	NM_013454|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr19_+_54119671_54119753	0.362074	AUGGCUU	NM_007417|Adra2a|11551|adrenergic receptor, alpha 2a	AK141573|Adra2a|11551|adrenergic receptor, alpha 2a	AK140461|Adra2a|11551|adrenergic receptor, alpha 2a	AK046802|Adra2a|11551|adrenergic receptor, alpha 2a
mm9_v1_chr7_-_54051250_54051427	0.360818	AUGGCUU	BC082542|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005247|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005248|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001167864|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	BC046443|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)
mm9_v1_chr14_-_48188088_48188108	0.360549	AUGGCUU	AK029330|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK029967|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	BC090995|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK054196|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	NM_172599|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)
mm9_v1_chr5_-_151397024_151397110	0.360248	AUGGCUU	AK042145|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK046116|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK138666|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK155341|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK131647|N4bp2l1|100637|NEDD4 binding protein 2-like 1	NM_133898|N4bp2l1|100637|NEDD4 binding protein 2-like 1	AK010587|N4bp2l1|100637|NEDD4 binding protein 2-like 1
mm9_v1_chr5_+_31117077_31117214	0.3599	AUGGCUU	BC048833|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AF468005|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	BC057918|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	NM_133350|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3	AK177097|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr6_-_35489875_35489887	0.359155	AUGGCUU	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr9_+_13553574_13553628	0.356046	AUGGCUU	AK020065|Mtmr2|77116|myotubularin related protein 2	NM_023858|Mtmr2|77116|myotubularin related protein 2
mm9_v1_chr11_+_101037415_101037470	0.344957	AUGGCUU	AF039833|Cntnap1|53321|contactin associated protein-like 1	NM_016782|Cntnap1|53321|contactin associated protein-like 1
mm9_v1_chr9_+_30838224_30838249	0.337099	AUGGCUU	AK036895|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_001115130|Zbtb44|235132|zinc finger and BTB domain containing 44	NM_172765|Zbtb44|235132|zinc finger and BTB domain containing 44
mm9_v1_chr11_+_69749297_69749476	0.33645	AUGGCUU	BC141112|Ybx2|53422|Y box protein 2	BC100454|Ybx2|53422|Y box protein 2	NM_016875|Ybx2|53422|Y box protein 2	AK131786|Ybx2|53422|Y box protein 2	AF073954|Ybx2|53422|Y box protein 2
mm9_v1_chr10_-_121023773_121023881	0.335666	AUGGCUU	AK083214|Tbk1|56480|TANK-binding kinase 1	AK004649|Tbk1|56480|TANK-binding kinase 1	AK168193|Tbk1|56480|TANK-binding kinase 1	NM_019786|Tbk1|56480|TANK-binding kinase 1
mm9_v1_chr18_-_15222079_15222098	0.33239	AUGGCUU	NM_001142731|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr15_-_43002356_43002397	0.331331	AUGGCUU	AK087485|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	NM_172815|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK052457|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)	AK049891|Rspo2|239405|R-spondin 2 homolog (Xenopus laevis)
mm9_v1_chr11_+_95685772_95685902	0.330488	AUGGCUU	AJ457190|Phospho1|237928|phosphatase, orphan 1	NM_153104|Phospho1|237928|phosphatase, orphan 1
mm9_v1_chr4_-_104782444_104782511	0.329383	AUGGCUU	NM_178143|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138565|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138566|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm9_v1_chr14_+_55502261_55502285	0.328333	AUGGCUU	AF030769|Bcl2l2|12050|BCL2-like 2	NM_007537|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr10_+_110601745_110601988	0.309032	AUGGCUU	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr9_+_94570310_94570389	0.305056	AUGGCUU	NM_177909|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK037058|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC153825|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC099942|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK172687|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK156494|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm9_v1_chr8_-_82235601_82235638	0.30348	AUGGCUU	AK049299|Abce1|24015|ATP-binding cassette, sub-family E (OABP), member 1	NM_015751|Abce1|24015|ATP-binding cassette, sub-family E (OABP), member 1
mm9_v1_chr1_-_172519932_172519981	0.299754	AUGGCUU	AK045124|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK018149|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK053892|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	NM_001109985|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein
mm9_v1_chr10_-_95026787_95026872	0.297588	AUGGCUU	NM_027722|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr1_+_120285634_120285634	0.294359	AUGGCUU	AK042402|Clasp1|76707|CLIP associating protein 1	NM_001081276|Clasp1|76707|CLIP associating protein 1	NM_029709|Clasp1|76707|CLIP associating protein 1	NM_177548|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr13_-_89881946_89882116	0.293563	AUGGCUU	BC021652|Vcan|13003|versican	AK163927|Vcan|13003|versican	AK135324|Vcan|13003|versican	AK032794|Vcan|13003|versican	NM_001081249|Vcan|13003|versican	NM_001134474|Vcan|13003|versican	NM_001134475|Vcan|13003|versican	NM_019389|Vcan|13003|versican	NM_172955|Vcan|13003|versican
mm9_v1_chr7_+_51565563_51565633	0.291809	AUGGCUU	NM_001034115|Shank1|243961|SH3/ankyrin domain gene 1
mm9_v1_chr8_+_109817355_109817761	0.283468	AUGGCUU	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chrX_+_162676870_162676901	0.280825	AUGGCUU	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr1_-_192886758_192886821	0.279808	AUGGCUU	AK156071|Tatdn3|68972|TatD DNase domain containing 3	AK005193|Tatdn3|68972|TatD DNase domain containing 3	BC061248|Tatdn3|68972|TatD DNase domain containing 3	NM_001163421|Tatdn3|68972|TatD DNase domain containing 3	NM_001163422|Tatdn3|68972|TatD DNase domain containing 3	NM_026895|Tatdn3|68972|TatD DNase domain containing 3
mm9_v1_chr19_-_3575695_3575758	0.272876	AUGGCUU	AK129392|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK088526|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	BC008529|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK035236|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK015925|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	AK018652|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_001164159|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_028999|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3	NM_029456|Ppp6r3|52036|protein phosphatase 6, regulatory subunit 3
mm9_v1_chr5_+_115956682_115956792	0.271611	AUGGCUU	AK171226|Pxn|19303|paxillin	AK148060|Pxn|19303|paxillin	NM_011223|Pxn|19303|paxillin	NM_133915|Pxn|19303|paxillin	AK149933|Pxn|19303|paxillin	AK171436|Pxn|19303|paxillin	BC025493|Pxn|19303|paxillin	AK167299|Pxn|19303|paxillin	AF293882|Pxn|19303|paxillin
mm9_v1_chr1_-_107253245_107253286	0.265851	AUGGCUU	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr14_-_46149660_46149750	0.263074	AUGGCUU	BC033436|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK079588|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK166552|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK145030|Fermt2|218952|fermitin family homolog 2 (Drosophila)	AK165608|Fermt2|218952|fermitin family homolog 2 (Drosophila)	NM_146054|Fermt2|218952|fermitin family homolog 2 (Drosophila)
mm9_v1_chr2_+_70956105_70956168	0.251577	AUGGCUU	AK029112|Cybrd1|73649|cytochrome b reductase 1	NM_028593|Cybrd1|73649|cytochrome b reductase 1	AK008849|Cybrd1|73649|cytochrome b reductase 1	AF354666|Cybrd1|73649|cytochrome b reductase 1
mm9_v1_chr3_+_106350707_106350756	0.246903	AUGGCUU	NM_001025582|Dram2|67171|VDNA-damage regulated autophagy modulator 2	NM_026013|Dram2|67171|VDNA-damage regulated autophagy modulator 2	AK015888|Dram2|67171|VDNA-damage regulated autophagy modulator 2	AK172455|Dram2|67171|VDNA-damage regulated autophagy modulator 2
mm9_v1_chr11_-_3271367_3271408	0.246901	AUGGCUU	AB005132|Limk2|16886|LIM motif-containing protein kinase 2	NM_173053|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr15_-_79518160_79518352	0.246786	AUGGCUU	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr2_+_151368197_151368330	0.24511	AUGGCUU	NM_008019|Fkbp1a|14225|FK506 binding protein 1a	AK019362|Fkbp1a|14225|FK506 binding protein 1a	AK010693|Fkbp1a|14225|FK506 binding protein 1a	AK145400|Fkbp1a|14225|FK506 binding protein 1a	AK169242|Fkbp1a|14225|FK506 binding protein 1a	AK141261|Fkbp1a|14225|FK506 binding protein 1a	AK168333|Fkbp1a|14225|FK506 binding protein 1a
mm9_v1_chr4_-_9596206_9596308	0.244206	AUGGCUU	BC015281|Asph|65973|aspartate-beta-hydroxylase	AF289486|Asph|65973|aspartate-beta-hydroxylase	AF289487|Asph|65973|aspartate-beta-hydroxylase	AF289488|Asph|65973|aspartate-beta-hydroxylase	AK030293|Asph|65973|aspartate-beta-hydroxylase	AK032420|Asph|65973|aspartate-beta-hydroxylase	AK151787|Asph|65973|aspartate-beta-hydroxylase	AK049506|Asph|65973|aspartate-beta-hydroxylase	AK139566|Asph|65973|aspartate-beta-hydroxylase	AK160984|Asph|65973|aspartate-beta-hydroxylase	AK165260|Asph|65973|aspartate-beta-hydroxylase	BC061098|Asph|65973|aspartate-beta-hydroxylase	NM_001177849|Asph|65973|aspartate-beta-hydroxylase	NM_001177850|Asph|65973|aspartate-beta-hydroxylase	NM_001177851|Asph|65973|aspartate-beta-hydroxylase	NM_001177855|Asph|65973|aspartate-beta-hydroxylase	NM_001177856|Asph|65973|aspartate-beta-hydroxylase	NM_023066|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr3_+_60305108_60305212	0.24401	AUGGCUU	AK162039|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK149405|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AB093240|Mbnl1|56758|muscleblind-like 1 (Drosophila)	NM_020007|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK088871|Mbnl1|56758|muscleblind-like 1 (Drosophila)	AK153848|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC060031|Mbnl1|56758|muscleblind-like 1 (Drosophila)	BC096600|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr3_+_87329497_87329593	0.241749	AUGGCUU	NM_001083318|Etv3|27049|ets variant gene 3	NM_012051|Etv3|27049|ets variant gene 3	AF218539|Etv3|27049|ets variant gene 3	AK147552|Etv3|27049|ets variant gene 3	AK163509|Etv3|27049|ets variant gene 3	AK155080|Etv3|27049|ets variant gene 3	AK089640|Etv3|27049|ets variant gene 3	AK156824|Etv3|27049|ets variant gene 3	AK155957|Etv3|27049|ets variant gene 3	BC078636|Etv3|27049|ets variant gene 3	BC057151|Etv3|27049|ets variant gene 3
mm9_v1_chr13_+_9275741_9275783	0.233455	AUGGCUU	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chrX_+_20265590_20265887	0.226382	AUGGCUU	AK143518|Cdk16|18555|cyclin-dependent kinase 16	AK051425|Cdk16|18555|cyclin-dependent kinase 16	NM_011049|Cdk16|18555|cyclin-dependent kinase 16	AK211169|Cdk16|18555|cyclin-dependent kinase 16	BC011069|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr19_+_11986887_11986895	0.224452	AUGGCUU	AK150301|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170918|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	NM_172635|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154102|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr10_-_33344405_33344571	0.221762	AUGGCUU	AK039308|Clvs2|215890|clavesin 2	NM_175448|Clvs2|215890|clavesin 2	BC058539|Clvs2|215890|clavesin 2	AK163214|Clvs2|215890|clavesin 2	AK053797|Clvs2|215890|clavesin 2	AK139868|Clvs2|215890|clavesin 2	AK139409|Clvs2|215890|clavesin 2	AK169009|Clvs2|215890|clavesin 2
mm9_v1_chr6_+_53523365_53523387	0.220808	AUGGCUU	AK052230|Creb5|231991|cAMP responsive element binding protein 5	AK052451|Creb5|231991|cAMP responsive element binding protein 5	AK154148|Creb5|231991|cAMP responsive element binding protein 5	NM_172728|Creb5|231991|cAMP responsive element binding protein 5	AK170128|Creb5|231991|cAMP responsive element binding protein 5	AK155537|Creb5|231991|cAMP responsive element binding protein 5	BC098487|Creb5|231991|cAMP responsive element binding protein 5
mm9_v1_chr5_+_93696566_93696638	0.215588	AUGGCUU	NM_007635|Ccng2|12452|cyclin G2	AK170651|Ccng2|12452|cyclin G2	AF005885|Ccng2|12452|cyclin G2
mm9_v1_chr12_+_30213224_30213265	0.214035	AUGGCUU	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr19_+_17030600_17030608	0.213069	AUGGCUU	AK165582|Prune2|353211|prune homolog 2 (Drosophila)	AK020727|Prune2|353211|prune homolog 2 (Drosophila)	AK039241|Prune2|353211|prune homolog 2 (Drosophila)	AK165913|Prune2|353211|prune homolog 2 (Drosophila)	NM_181348|Prune2|353211|prune homolog 2 (Drosophila)
mm9_v1_chr2_+_166631011_166631132	0.211461	AUGGCUU	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr10_-_53795556_53795601	0.204761	AUGGCUU	AK031038|Man1a|17155|mannosidase 1, alpha	NM_008548|Man1a|17155|mannosidase 1, alpha
mm9_v1_chr18_-_20904585_20904945	0.201764	AUGGCUU	AK144997|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138247|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK163956|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164262|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK164724|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK137385|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AK138610|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	AF097158|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	NM_019737|B4galt6|56386|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6
mm9_v1_chr3_-_63733305_63733317	0.200024	AUGGCUU	AK087526|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene	NM_177856|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene
mm9_v1_chr19_-_32285445_32285502	0.197717	AUGGCUU	AK079254|Sgms1|208449|sphingomyelin synthase 1	AK133967|Sgms1|208449|sphingomyelin synthase 1	BC019443|Sgms1|208449|sphingomyelin synthase 1	AK150272|Sgms1|208449|sphingomyelin synthase 1	AK152312|Sgms1|208449|sphingomyelin synthase 1	AK160539|Sgms1|208449|sphingomyelin synthase 1	NM_001168526|Sgms1|208449|sphingomyelin synthase 1
mm9_v1_chr14_+_28435613_28435695	0.194788	AUGGCUU	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr17_+_15080188_15080199	0.193864	AUGGCUU	AK028052|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083880|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083881|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083882|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_026451|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr11_+_54336344_54336357	0.192937	AUGGCUU	AK167055|Rapgef6|192786|Rap guanine nucleotide exchange factor (GEF) 6	NM_175258|Rapgef6|192786|Rap guanine nucleotide exchange factor (GEF) 6	AK040089|Rapgef6|192786|Rap guanine nucleotide exchange factor (GEF) 6
mm9_v1_chr3_-_127483385_127483450	0.192514	AUGGCUU	AK018401|Alpk1|71481|alpha-kinase 1	AK041315|Alpk1|71481|alpha-kinase 1	AK173191|Alpk1|71481|alpha-kinase 1	NM_027808|Alpk1|71481|alpha-kinase 1
mm9_v1_chr9_-_116084395_116084480	0.191398	AUGGCUU	AK046561|Tgfbr2|21813|transforming growth factor, beta receptor II	AK159327|Tgfbr2|21813|transforming growth factor, beta receptor II	AK148167|Tgfbr2|21813|transforming growth factor, beta receptor II	AK053793|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_009371|Tgfbr2|21813|transforming growth factor, beta receptor II	NM_029575|Tgfbr2|21813|transforming growth factor, beta receptor II
mm9_v1_chr2_-_150434141_150434304	0.188189	AUGGCUU	AK189217|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AK009057|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	NM_027977|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	BC055706|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AJ310638|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AK154266|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene
mm9_v1_chr14_+_105657889_105657939	0.179331	AUGGCUU	NM_001190989|Ndfip2|76273|Nedd4 family interacting protein 2	NM_029561|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr12_-_101963226_101963268	0.177094	AUGGCUU	AY341873|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	AY341881|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	BC035298|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	NM_153587|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5
mm9_v1_chr9_+_108710676_108710814	0.171051	AUGGCUU	BC064818|Nckipsd|80987|NCK interacting protein with SH3 domain	NM_030729|Nckipsd|80987|NCK interacting protein with SH3 domain	AK134725|Nckipsd|80987|NCK interacting protein with SH3 domain	AF130313|Nckipsd|80987|NCK interacting protein with SH3 domain
mm9_v1_chr9_+_111174321_111174442	0.171037	AUGGCUU	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr4_-_124539414_124539476	0.168765	AUGGCUU	BC065047|Maneal|215090|mannosidase, endo-alpha-like	NM_001007573|Maneal|215090|mannosidase, endo-alpha-like
mm9_v1_chr11_-_106474237_106474312	0.159188	AUGGCUU	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr16_-_21694608_21694737	0.15693	AUGGCUU	AK051892|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK044207|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK053253|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC072629|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC052490|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	NM_001001881|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene
mm9_v1_chr10_+_127814144_127814228	0.153124	AUGGCUU	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr15_+_78707595_78707620	0.148932	AUGGCUU	BC026802|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	NM_145929|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1
mm9_v1_chr18_-_82862111_82862127	0.148816	AUGGCUU	BC138187|Zfp236|329002|zinc finger protein 236	BC145179|Zfp236|329002|zinc finger protein 236	BC145180|Zfp236|329002|zinc finger protein 236	NM_177832|Zfp236|329002|zinc finger protein 236
mm9_v1_chr17_-_27957398_27957565	0.147904	AUGGCUU	AK143016|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK165011|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK161603|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132324|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132326|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137573|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137576|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC145403|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001033279|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001044719|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed
mm9_v1_chr6_-_11857434_11857486	0.146618	AUGGCUU	AK008506|Ndufa4|17992|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	AK008357|Ndufa4|17992|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	AK076036|Ndufa4|17992|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	NM_010886|Ndufa4|17992|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	AK005084|Ndufa4|17992|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4
mm9_v1_chrX_+_148613496_148613589	0.146421	AUGGCUU	AK155453|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001005475|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr7_-_4453210_4453293	0.144701	AUGGCUU	AK144521|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK046570|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK010836|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK144691|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	NM_029834|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C
mm9_v1_chr10_-_126507271_126507387	0.143096	AUGGCUU	AK160269|Tspan31|67125|tetraspanin 31	BC023306|Tspan31|67125|tetraspanin 31	AK012457|Tspan31|67125|tetraspanin 31	AK014183|Tspan31|67125|tetraspanin 31	AK075962|Tspan31|67125|tetraspanin 31	NM_025982|Tspan31|67125|tetraspanin 31	AK012567|Tspan31|67125|tetraspanin 31	AK012853|Tspan31|67125|tetraspanin 31	AK013523|Tspan31|67125|tetraspanin 31
mm9_v1_chr2_+_172171015_172171168	0.139251	AUGGCUU	AK160529|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	NM_025912|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	BC016210|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	BC057642|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK147935|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK084415|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK148213|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK076087|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK008190|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK148334|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK148435|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene	AK149497|2010011I20Rik|67017|RIKEN cDNA 2010011I20 gene
mm9_v1_chr2_-_90910332_90910406	0.136262	AUGGCUU	BC125525|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13	BC137752|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13	AK035296|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13	NM_026721|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13	BC020106|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13	AK156951|Slc39a13|68427|solute carrier family 39 (metal ion transporter), member 13
mm9_v1_chr4_-_70195952_70195978	0.13371	AUGGCUU	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr10_-_79017835_79017849	0.129156	AUGGCUU	BC067013|Mier2|70427|mesoderm induction early response 1, family member 2	NM_027422|Mier2|70427|mesoderm induction early response 1, family member 2	AK154672|Mier2|70427|mesoderm induction early response 1, family member 2
mm9_v1_chr19_+_36629128_36629172	0.127228	AUGGCUU	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr19_-_29722826_29722925	0.127047	AUGGCUU	AK129447|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC086627|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK137206|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK037287|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC151181|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC151182|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC157914|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK041066|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK050284|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	NM_001081213|Ermp1|226090|endoplasmic reticulum metallopeptidase 1
mm9_v1_chr9_-_44773594_44773682	0.121167	AUGGCUU	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr12_-_106103285_106103341	0.12023	AUGGCUU	AB047978|Clmn|94040|calmin	AB059643|Clmn|94040|calmin	AB059644|Clmn|94040|calmin	AB059645|Clmn|94040|calmin	AB059646|Clmn|94040|calmin	AB059647|Clmn|94040|calmin	AB059648|Clmn|94040|calmin	NM_001040682|Clmn|94040|calmin	NM_053155|Clmn|94040|calmin
mm9_v1_chr4_-_11893500_11893609	0.112912	AUGGCUU	AK133542|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	AK137550|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001033453|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001098230|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1
mm9_v1_chrX_+_38754480_38754557	0.111434	AUGGCUU	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr1_+_133904162_133904241	0.109697	AUGGCUU	NM_007923|Elk4|13714|ELK4, member of ETS oncogene family	AK156537|Elk4|13714|ELK4, member of ETS oncogene family
mm9_v1_chr14_-_102008407_102008407	0.10593	AUGGCUU	AK039337|Tbc1d4|210789|TBC1 domain family, member 4	NM_001081278|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr3_+_79433000_79433076	0.103636	AUGGCUU	NM_029482|4930579G24Rik|75939|RIKEN cDNA 4930579G24 gene	AK137776|4930579G24Rik|75939|RIKEN cDNA 4930579G24 gene	BC052483|4930579G24Rik|75939|RIKEN cDNA 4930579G24 gene
mm9_v1_chr3_+_142193286_142193339	0.0997675	AUGGCUU	NM_001083312|Gbp6|229900|guanylate binding protein 6	AK036666|Gbp6|229900|guanylate binding protein 6	AK087751|Gbp6|229900|guanylate binding protein 6	NM_145545|Gbp6|229900|guanylate binding protein 6	BC010229|Gbp6|229900|guanylate binding protein 6
mm9_v1_chr10_+_41170163_41170242	0.0992295	AUGGCUU	AK146986|Zbtb24|268294|zinc finger and BTB domain containing 24	AK154467|Zbtb24|268294|zinc finger and BTB domain containing 24	AY210402|Zbtb24|268294|zinc finger and BTB domain containing 24	BC050933|Zbtb24|268294|zinc finger and BTB domain containing 24	NM_153398|Zbtb24|268294|zinc finger and BTB domain containing 24	AK054097|Zbtb24|268294|zinc finger and BTB domain containing 24	AK169260|Zbtb24|268294|zinc finger and BTB domain containing 24	BC055367|Zbtb24|268294|zinc finger and BTB domain containing 24	AF263010|Zbtb24|268294|zinc finger and BTB domain containing 24
mm9_v1_chr8_+_114060341_114060576	0.0983721	AUGGCUU	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr3_+_95238292_95238339	0.0974708	AUGGCUU	AK040475|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	NM_001037737|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	NM_009709|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	AK028546|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	AK153355|Arnt|11863|aryl hydrocarbon receptor nuclear translocator	AK152473|Arnt|11863|aryl hydrocarbon receptor nuclear translocator
mm9_v1_chr10_+_56097078_56097350	0.0966626	AUGGCUU	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr1_+_9591347_9591354	0.093978	AUGGCUU	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr17_+_50648736_50648932	0.0931247	AUGGCUU	AB033615|Plcl2|224860|phospholipase C-like 2	NM_013880|Plcl2|224860|phospholipase C-like 2	AK165548|Plcl2|224860|phospholipase C-like 2	AK154288|Plcl2|224860|phospholipase C-like 2
mm9_v1_chr9_+_65756816_65756864	0.0908433	AUGGCUU	AK090262|Csnk1g1|214897|casein kinase 1, gamma 1	NM_173185|Csnk1g1|214897|casein kinase 1, gamma 1	AK050473|Csnk1g1|214897|casein kinase 1, gamma 1	AK149310|Csnk1g1|214897|casein kinase 1, gamma 1
mm9_v1_chr13_-_99585403_99585403	0.0900079	AUGGCUU	AK031041|Fcho2|218503|FCH domain only 2	NM_172591|Fcho2|218503|FCH domain only 2
mm9_v1_chr8_+_109555200_109555247	0.0894935	AUGGCUU	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr15_+_103070840_103070935	0.0887954	AUGGCUU	AK131999|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK136113|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146630|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_001039129|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_010447|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168531|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK135391|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK152684|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK161730|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166901|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167161|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167810|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167811|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168420|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168733|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK169216|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK007802|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK088308|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146126|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166989|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167820|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167913|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	M99167|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC052723|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC080675|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC092395|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC089340|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC083136|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86728|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86729|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1
mm9_v1_chr14_-_34260323_34260352	0.0868777	AUGGCUU	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr16_-_65562921_65563010	0.0864199	AUGGCUU	AK084111|Chmp2b|68942|chromatin modifying protein 2B	NM_026879|Chmp2b|68942|chromatin modifying protein 2B	BC055809|Chmp2b|68942|chromatin modifying protein 2B
mm9_v1_chr9_-_88376937_88377419	0.0862413	AUGGCUU	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr2_-_37502738_37502804	0.0839409	AUGGCUU	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr2_+_153117135_153117203	0.0811896	AUGGCUU	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr19_+_42245036_42245077	0.0809959	AUGGCUU	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr15_-_27955602_27955621	0.0756286	AUGGCUU	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr9_+_54547344_54547366	0.0748388	AUGGCUU	AK046476|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK076175|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK141909|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	NM_021422|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4
mm9_v1_chr11_+_75469516_75469674	0.0709261	AUGGCUU	AK171107|Myo1c|17913|myosin IC	NM_001080775|Myo1c|17913|myosin IC	AK154294|Myo1c|17913|myosin IC	AK165680|Myo1c|17913|myosin IC	AY007255|Myo1c|17913|myosin IC
mm9_v1_chr11_-_84684177_84684284	0.0708034	AUGGCUU	AB064543|Ggnbp2|217039|gametogenetin binding protein 2	AY633741|Ggnbp2|217039|gametogenetin binding protein 2	NM_153144|Ggnbp2|217039|gametogenetin binding protein 2	AK162027|Ggnbp2|217039|gametogenetin binding protein 2
mm9_v1_chr8_+_79426245_79426406	0.0708021	AUGGCUU	BC133713|Nr3c2|110784|nuclear receptor subfamily 3, group C, member 2	NM_001083906|Nr3c2|110784|nuclear receptor subfamily 3, group C, member 2
mm9_v1_chr3_+_153636391_153636423	0.0682108	AUGGCUU	BC086641|Slc44a5|242259|solute carrier family 44, member 5	NM_001081263|Slc44a5|242259|solute carrier family 44, member 5
mm9_v1_chr13_-_46823191_46823231	0.0658224	AUGGCUU	AK086847|Nup153|218210|nucleoporin 153	NM_175749|Nup153|218210|nucleoporin 153
mm9_v1_chr19_-_32786771_32786846	0.065501	AUGGCUU	BC043051|Atad1|67979|ATPase family, AAA domain containing 1	AK044925|Atad1|67979|ATPase family, AAA domain containing 1	BC029085|Atad1|67979|ATPase family, AAA domain containing 1	NM_026487|Atad1|67979|ATPase family, AAA domain containing 1	AK014967|Atad1|67979|ATPase family, AAA domain containing 1	AK030719|Atad1|67979|ATPase family, AAA domain containing 1	AK150469|Atad1|67979|ATPase family, AAA domain containing 1	AK152059|Atad1|67979|ATPase family, AAA domain containing 1	AK033639|Atad1|67979|ATPase family, AAA domain containing 1	AK165953|Atad1|67979|ATPase family, AAA domain containing 1	AK075685|Atad1|67979|ATPase family, AAA domain containing 1
mm9_v1_chr10_-_52101880_52101956	0.0645528	AUGGCUU	BC051171|Gopc|94221|golgi associated PDZ and coiled-coil motif containing	NM_053187|Gopc|94221|golgi associated PDZ and coiled-coil motif containing	AK171881|Gopc|94221|golgi associated PDZ and coiled-coil motif containing
mm9_v1_chr9_+_114597854_114597998	0.0643443	AUGGCUU	AK082950|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK159702|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	BC023347|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	NM_146229|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chr1_+_107560433_107560513	0.063766	AUGGCUU	AK035724|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_029349|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_173187|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK148005|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC051567|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117950|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117949|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK009628|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene
mm9_v1_chr7_+_127245860_127245969	0.0621973	AUGGCUU	AK080630|Tmem159|233806|transmembrane protein 159	AK078811|Tmem159|233806|transmembrane protein 159	AK167192|Tmem159|233806|transmembrane protein 159	AK142240|Tmem159|233806|transmembrane protein 159	AK150434|Tmem159|233806|transmembrane protein 159	AK087074|Tmem159|233806|transmembrane protein 159	AK158048|Tmem159|233806|transmembrane protein 159	AK158249|Tmem159|233806|transmembrane protein 159	AK158250|Tmem159|233806|transmembrane protein 159	BC006689|Tmem159|233806|transmembrane protein 159	NM_145586|Tmem159|233806|transmembrane protein 159	AK171378|Tmem159|233806|transmembrane protein 159
mm9_v1_chr11_+_75465000_75465105	0.0584432	AUGGCUU	NM_008659|Myo1c|17913|myosin IC	AK155530|Myo1c|17913|myosin IC	X99638|Myo1c|17913|myosin IC	BC021481|Myo1c|17913|myosin IC	AK004743|Myo1c|17913|myosin IC
mm9_v1_chrX_+_162782484_162782852	0.0570506	AUGGCUU	NM_001177955|Gpm6b|14758|glycoprotein m6b	NM_001177956|Gpm6b|14758|glycoprotein m6b	NM_001177957|Gpm6b|14758|glycoprotein m6b	NM_001177958|Gpm6b|14758|glycoprotein m6b	NM_001177959|Gpm6b|14758|glycoprotein m6b	NM_001177960|Gpm6b|14758|glycoprotein m6b	AF254869|Gpm6b|14758|glycoprotein m6b	AF254870|Gpm6b|14758|glycoprotein m6b	AF254872|Gpm6b|14758|glycoprotein m6b	AF254873|Gpm6b|14758|glycoprotein m6b	AF254874|Gpm6b|14758|glycoprotein m6b	AF254875|Gpm6b|14758|glycoprotein m6b	AF254878|Gpm6b|14758|glycoprotein m6b	AF254879|Gpm6b|14758|glycoprotein m6b	AK013660|Gpm6b|14758|glycoprotein m6b	AK140714|Gpm6b|14758|glycoprotein m6b	S65737|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr6_-_30254273_30254567	0.0557244	AUGGCUU	U19854|Ube2h|22214|ubiquitin-conjugating enzyme E2H	BC008517|Ube2h|22214|ubiquitin-conjugating enzyme E2H	AK131688|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001170345|Gm2058|100039133|predicted gene 2058	AK161414|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001169576|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_009459|Ube2h|22214|ubiquitin-conjugating enzyme E2H
mm9_v1_chr19_+_41986360_41986656	0.0539206	AUGGCUU	NM_023418|Pgam1|18648|phosphoglycerate mutase 1	BC002241|Pgam1|18648|phosphoglycerate mutase 1	BC106139|Pgam1|18648|phosphoglycerate mutase 1	BC005661|Pgam1|18648|phosphoglycerate mutase 1	AF283667|Pgam1|18648|phosphoglycerate mutase 1	AK004921|Pgam1|18648|phosphoglycerate mutase 1	AK009905|Pgam1|18648|phosphoglycerate mutase 1	AK144681|Pgam1|18648|phosphoglycerate mutase 1	AK153202|Pgam1|18648|phosphoglycerate mutase 1	AK159305|Pgam1|18648|phosphoglycerate mutase 1	AK150716|Pgam1|18648|phosphoglycerate mutase 1	AK152443|Pgam1|18648|phosphoglycerate mutase 1	AK165410|Pgam1|18648|phosphoglycerate mutase 1	AK168949|Pgam1|18648|phosphoglycerate mutase 1	BC083090|Pgam1|18648|phosphoglycerate mutase 1	BC066844|Pgam1|18648|phosphoglycerate mutase 1
mm9_v1_chr2_+_156022382_156022502	0.0520457	AUGGCUU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr2_-_143836838_143837031	0.0507636	AUGGCUU	BC002105|Rrbp1|81910|ribosome binding protein 1	AF273683|Rrbp1|81910|ribosome binding protein 1	AF273684|Rrbp1|81910|ribosome binding protein 1	AF273685|Rrbp1|81910|ribosome binding protein 1	AF273686|Rrbp1|81910|ribosome binding protein 1	AF273687|Rrbp1|81910|ribosome binding protein 1	AF273688|Rrbp1|81910|ribosome binding protein 1	AF273689|Rrbp1|81910|ribosome binding protein 1	AF273690|Rrbp1|81910|ribosome binding protein 1	AF273691|Rrbp1|81910|ribosome binding protein 1	AF273692|Rrbp1|81910|ribosome binding protein 1	AF273693|Rrbp1|81910|ribosome binding protein 1	BC031452|Rrbp1|81910|ribosome binding protein 1	AK039114|Rrbp1|81910|ribosome binding protein 1	NM_024281|Rrbp1|81910|ribosome binding protein 1	NM_133626|Rrbp1|81910|ribosome binding protein 1
mm9_v1_chr12_-_100688283_100688306	0.0491849	AUGGCUU	NM_183186|Foxn3|71375|forkhead box N3	AK148970|Foxn3|71375|forkhead box N3
mm9_v1_chr4_-_126106749_126106807	0.0476815	AUGGCUU	AK035042|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK083652|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK171118|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	AK154436|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3	NM_153402|Eif2c3|214150|eukaryotic translation initiation factor 2C, 3
mm9_v1_chr3_+_88425011_88425071	0.0428575	AUGGCUU	NM_008487|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK156379|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AF177032|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	U28495|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr15_+_41662472_41662583	0.0420217	AUGGCUU	NM_001130164|Oxr1|170719|oxidation resistance 1	AK014186|3110047M12Rik|73184|RIKEN cDNA 3110047M12 gene
mm9_v1_chr19_+_45005608_45005655	0.0392807	AUGGCUU	NM_001081225|Fam178a|226151|family with sequence similarity 178, member A	AK031688|Fam178a|226151|family with sequence similarity 178, member A	AK147588|Fam178a|226151|family with sequence similarity 178, member A	AK020064|Fam178a|226151|family with sequence similarity 178, member A	AK045983|Fam178a|226151|family with sequence similarity 178, member A
mm9_v1_chr8_-_89269853_89269958	0.0388089	AUGGCUU	BC046317|Siah1a|20437|seven in absentia 1A	NM_009172|Siah1a|20437|seven in absentia 1A
mm9_v1_chr16_-_92697567_92697590	0.0383933	AUGGCUU	AK155262|Runx1|12394|runt related transcription factor 1	D26532|Runx1|12394|runt related transcription factor 1	NM_001111023|Runx1|12394|runt related transcription factor 1	NM_009821|Runx1|12394|runt related transcription factor 1
mm9_v1_chr4_-_107973683_107973743	0.0376667	AUGGCUU	AK166278|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK148335|Zyg11b|414872|zyg-ll homolog B (C. elegans)	NM_001033634|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr10_-_80119815_80119815	0.0371404	AUGGCUU	NM_145361|Btbd2|208198|BTB (POZ) domain containing 2
mm9_v1_chr5_-_49280703_49280795	0.0351767	AUGGCUU	AF453243|Kcnip4|80334|Kv channel interacting protein 4	AK165773|Kcnip4|80334|Kv channel interacting protein 4	AK049662|Kcnip4|80334|Kv channel interacting protein 4	DQ148503|Kcnip4|80334|Kv channel interacting protein 4	AK039048|Kcnip4|80334|Kv channel interacting protein 4	NM_030265|Kcnip4|80334|Kv channel interacting protein 4
mm9_v1_chr1_+_52176281_52176465	0.0344945	AUGGCUU	AK039458|Stat1|20846|signal transducer and activator of transcription 1	NM_009283|Stat1|20846|signal transducer and activator of transcription 1	AK159887|Stat1|20846|signal transducer and activator of transcription 1	AK082706|Stat1|20846|signal transducer and activator of transcription 1	AK018544|Stat1|20846|signal transducer and activator of transcription 1	AK041599|Stat1|20846|signal transducer and activator of transcription 1	AK041814|Stat1|20846|signal transducer and activator of transcription 1	AK084855|Stat1|20846|signal transducer and activator of transcription 1	BC004808|Stat1|20846|signal transducer and activator of transcription 1	AK088874|Stat1|20846|signal transducer and activator of transcription 1	AK157458|Stat1|20846|signal transducer and activator of transcription 1	AK157263|Stat1|20846|signal transducer and activator of transcription 1	AK046517|Stat1|20846|signal transducer and activator of transcription 1
mm9_v1_chr11_-_65601774_65601862	0.0314328	AUGGCUU	AK139777|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044534|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK044698|Map2k4|26398|mitogen-activated protein kinase kinase 4	AK036928|Map2k4|26398|mitogen-activated protein kinase kinase 4	NM_009157|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr19_-_6996189_6996331	0.0294793	AUGGCUU	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr17_-_66234198_66234307	0.027363	AUGGCUU	BC075732|Ralbp1|19765|ralA binding protein 1	NM_001198949|Ralbp1|19765|ralA binding protein 1
mm9_v1_chr2_-_72818502_72818502	0.0260975	AUGGCUU	BC079874|Sp3|20687|trans-acting transcription factor 3	NM_001018042|Sp3|20687|trans-acting transcription factor 3
mm9_v1_chr13_-_46060325_46060353	0.0258393	AUGGCUU	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr1_-_134439500_134439516	0.0252877	AUGGCUU	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr7_-_82454147_82454194	0.0245759	AUGGCUU	BC079568|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_153579|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr16_-_98144201_98144247	0.024482	AUGGCUU	AK077731|C2cd2|207781|C2 calcium-dependent domain containing 2	BC043688|C2cd2|207781|C2 calcium-dependent domain containing 2	AK017896|C2cd2|207781|C2 calcium-dependent domain containing 2	AK143875|C2cd2|207781|C2 calcium-dependent domain containing 2	AK220454|C2cd2|207781|C2 calcium-dependent domain containing 2	AK086520|C2cd2|207781|C2 calcium-dependent domain containing 2	NM_174847|C2cd2|207781|C2 calcium-dependent domain containing 2
mm9_v1_chr17_-_10512217_10512250	0.0242614	AUGGCUU	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr14_-_49686341_49686379	0.0229597	AUGGCUU	NM_207214|Exoc5|105504|exocyst complex component 5
mm9_v1_chr11_+_35582969_35582996	0.0175448	AUGGCUU	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr8_+_73063553_73063604	0.0174908	AUGGCUU	NM_007924|Ell|13716|elongation factor RNA polymerase II	AK159027|Ell|13716|elongation factor RNA polymerase II	U80227|Ell|13716|elongation factor RNA polymerase II	BC014816|Ell|13716|elongation factor RNA polymerase II	BC024894|Ell|13716|elongation factor RNA polymerase II
mm9_v1_chr11_+_75546384_75546451	0.0152603	AUGGCUU	NM_009536|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	BC058686|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK169812|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK075995|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chrX_+_149672587_149672587	0.0138538	AUGGCUU	AK044185|Klf8|245671|Kruppel-like factor 8	NM_173780|Klf8|245671|Kruppel-like factor 8
mm9_v1_chr15_-_77137425_77137482	0.0111681	AUGGCUU	AK139555|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110827|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_053104|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_175387|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr6_-_149050201_149050210	0.0103815	AUGGCUU	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr2_-_104334610_104334646	0.00762874	AUGGCUU	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr15_-_74502981_74503002	0.00693237	AUGGCUU	AF162777|Arc|11838|activity regulated cytoskeletal-associated protein	BC023127|Arc|11838|activity regulated cytoskeletal-associated protein	AK170446|Arc|11838|activity regulated cytoskeletal-associated protein	AK157822|Arc|11838|activity regulated cytoskeletal-associated protein	NM_018790|Arc|11838|activity regulated cytoskeletal-associated protein
mm9_v1_chr5_+_145992583_145992654	0.00679977	AUGGCUU	AK161949|Zfp655|72611|zinc finger protein 655	NM_001083958|Zfp655|72611|zinc finger protein 655	BC060660|Zfp655|72611|zinc finger protein 655	AK018500|Zfp655|72611|zinc finger protein 655	BC061032|Zfp655|72611|zinc finger protein 655	AK220552|Zfp655|72611|zinc finger protein 655	BC062945|Zfp655|72611|zinc finger protein 655	NM_028298|Zfp655|72611|zinc finger protein 655	AK012336|Zfp655|72611|zinc finger protein 655	BC019153|Zfp655|72611|zinc finger protein 655	BC034731|Zfp655|72611|zinc finger protein 655
mm9_v1_chr9_+_77956998_77957048	0.00670064	AUGGCUU	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr19_+_40734282_40734322	0.00635127	AUGGCUU	AK030601|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	NM_009848|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	BC011278|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1	AF037366|Entpd1|12495|ectonucleoside triphosphate diphosphohydrolase 1
mm9_v1_chr5_+_13399301_13399308	0.00589812	AUGGCUU	D85028|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	NM_009152|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr3_+_30691760_30691806	0.00552655	AUGGCUU	BC017162|Sec62|69276|SEC62 homolog (S. cerevisiae)	NM_027016|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr3_-_68930928_68931049	0.00535103	AUGGCUU	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr13_-_96902531_96902531	0.0033296	AUGGCUU	AK173092|Sv2c|75209|synaptic vesicle glycoprotein 2c	NM_029210|Sv2c|75209|synaptic vesicle glycoprotein 2c
mm9_v1_chr2_+_32576591_32576654	0.00184704	AUGGCUU	AB043953|Sh2d3c|27387|SH2 domain containing 3C	NM_013781|Sh2d3c|27387|SH2 domain containing 3C	BC113203|Sh2d3c|27387|SH2 domain containing 3C	AF168364|Sh2d3c|27387|SH2 domain containing 3C	AK155165|Sh2d3c|27387|SH2 domain containing 3C	AK172072|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr10_-_122633922_122634056	0.00162214	AUGGCUU	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr11_+_80022524_80022572	0.00151841	AUGGCUU	AK147801|Rhot1|59040|ras homolog gene family, member T1	AK167502|Rhot1|59040|ras homolog gene family, member T1	NM_001163354|Rhot1|59040|ras homolog gene family, member T1	NM_001163355|Rhot1|59040|ras homolog gene family, member T1	NM_021536|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr13_+_106233718_106234065	0.00011971	AUGGCUU	AK140194|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	NM_008308|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049884|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049814|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138669|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138681|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A
