mm9_v1_chr15_-_48623520_48623540	5.75439	AUUGCAC	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr9_+_118387306_118387461	5.05691	AUUGCAC	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr4_+_97248556_97248685	4.69288	AUUGCAC	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr1_+_145487825_145487990	4.37134	AUUGCAC	AK036141|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	NM_020025|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK034371|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK083168|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	AK080106|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	BC046322|B3galt2|26878|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
mm9_v1_chr8_-_17535279_17535384	4.25854	AUUGCAC	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr5_-_108978950_108979047	4.1053	AUUGCAC	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr16_-_67621054_67621188	3.93681	AUUGCAC	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr7_-_148615247_148615354	3.55849	AUUGCAC	AF243130|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK005092|Cend1|57754|cell cycle exit and neuronal differentiation 1	BC023032|Cend1|57754|cell cycle exit and neuronal differentiation 1	AK079045|Cend1|57754|cell cycle exit and neuronal differentiation 1	NM_021316|Cend1|57754|cell cycle exit and neuronal differentiation 1
mm9_v1_chr13_-_14615371_14615494	3.54839	AUUGCAC	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr4_-_82151180_82151288	3.28528	AUUGCAC	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr7_+_116154373_116154494	3.21024	AUUGCAC	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr5_+_151062363_151062504	3.16304	AUUGCAC	NM_172887|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr14_-_122138082_122138150	2.94517	AUUGCAC	BC158050|Dock9|105445|dedicator of cytokinesis 9	AK122431|Dock9|105445|dedicator of cytokinesis 9	NM_001128307|Dock9|105445|dedicator of cytokinesis 9	NM_001128308|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr16_-_42340613_42340763	2.89954	AUUGCAC	AK031908|Gap43|14432|growth associated protein 43	BC080758|Gap43|14432|growth associated protein 43	BC028288|Gap43|14432|growth associated protein 43	NM_008083|Gap43|14432|growth associated protein 43
mm9_v1_chr2_+_158436493_158436936	2.6828	AUUGCAC	AY578289|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	NM_009508|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	BC052020|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163754|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK140468|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163661|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AJ001598|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1
mm9_v1_chr5_-_38550627_38550759	2.63754	AUUGCAC	AF035683|Nsg1|18196|neuron specific gene family member 1	AK144503|Nsg1|18196|neuron specific gene family member 1	BC008272|Nsg1|18196|neuron specific gene family member 1	AK078054|Nsg1|18196|neuron specific gene family member 1	AK148941|Nsg1|18196|neuron specific gene family member 1	AX775765|Nsg1|18196|neuron specific gene family member 1	NM_010942|Nsg1|18196|neuron specific gene family member 1
mm9_v1_chr19_+_28909559_28909655	2.50642	AUUGCAC	AK018188|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK045632|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK051428|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK083097|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC065099|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC064797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	D43797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	NM_009199|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	U73521|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm9_v1_chr15_-_56526052_56526100	2.45009	AUUGCAC	U52524|Has2|15117|hyaluronan synthase 2	BC080281|Has2|15117|hyaluronan synthase 2	U69695|Has2|15117|hyaluronan synthase 2	AK045020|Has2|15117|hyaluronan synthase 2	AK079729|Has2|15117|hyaluronan synthase 2	NM_008216|Has2|15117|hyaluronan synthase 2
mm9_v1_chr12_-_14158843_14158897	2.41486	AUUGCAC	BC005488|Fam84a|105005|family with sequence similarity 84, member A	NM_029007|Fam84a|105005|family with sequence similarity 84, member A	AK014625|Fam84a|105005|family with sequence similarity 84, member A
mm9_v1_chr1_+_189821727_189821874	2.39251	AUUGCAC	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr12_+_30213224_30213265	2.36918	AUUGCAC	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chrX_-_69901382_69901584	2.35578	AUUGCAC	BC119317|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	BC120686|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	M86568|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK134760|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK039144|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	NM_008067|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm9_v1_chr10_+_4424140_4424212	2.33913	AUUGCAC	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr5_+_139230946_139231095	2.33774	AUUGCAC	NM_030565|Fam20c|80752|family with sequence similarity 20, member C	AK149780|Fam20c|80752|family with sequence similarity 20, member C	AK154810|Fam20c|80752|family with sequence similarity 20, member C	AY778962|Fam20c|80752|family with sequence similarity 20, member C	BC025826|Fam20c|80752|family with sequence similarity 20, member C	BC025814|Fam20c|80752|family with sequence similarity 20, member C
mm9_v1_chr6_-_13789847_13789902	2.31265	AUUGCAC	BC065154|Gpr85|64450|G protein-coupled receptor 85	NM_145066|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr13_-_100286521_100286556	2.25603	AUUGCAC	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr11_-_119908236_119908480	2.25587	AUUGCAC	AY236858|Aatk|11302|apoptosis-associated tyrosine kinase	AY236859|Aatk|11302|apoptosis-associated tyrosine kinase	AB288871|Aatk|11302|apoptosis-associated tyrosine kinase	AB093253|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198785|Aatk|11302|apoptosis-associated tyrosine kinase	NM_007377|Aatk|11302|apoptosis-associated tyrosine kinase	BC042837|Aatk|11302|apoptosis-associated tyrosine kinase	BC052323|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr6_+_14851348_14851478	2.23933	AUUGCAC	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr4_+_130348406_130348575	2.21315	AUUGCAC	AK129153|Sdc3|20970|syndecan 3	NM_011520|Sdc3|20970|syndecan 3	AK155127|Sdc3|20970|syndecan 3	BC054795|Sdc3|20970|syndecan 3	BC062093|Sdc3|20970|syndecan 3	U52826|Sdc3|20970|syndecan 3
mm9_v1_chr8_-_125201971_125202083	2.1411	AUUGCAC	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr3_-_81949667_81949798	2.10019	AUUGCAC	BC057327|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK031305|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK028558|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AK004815|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	AF297082|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3	NM_021896|Gucy1a3|60596|guanylate cyclase 1, soluble, alpha 3
mm9_v1_chr1_+_7079000_7079035	2.04794	AUUGCAC	NM_183028|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr12_-_5382487_5382487	2.03863	AUUGCAC	BC065168|Klhl29|208439|kelch-like 29 (Drosophila)	NM_001164493|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chr12_+_103793130_103793206	2.01436	AUUGCAC	M64278|Chga|12652|chromogranin A	NM_007693|Chga|12652|chromogranin A	AK144504|Chga|12652|chromogranin A	BC026554|Chga|12652|chromogranin A
mm9_v1_chr9_+_45238375_45238483	1.89974	AUUGCAC	NM_001081270|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AK147531|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487345|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487347|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1
mm9_v1_chr6_+_96063137_96063148	1.72436	AUUGCAC	AK050001|Fam19a1|320265|family with sequence similarity 19, member A1	NM_182808|Fam19a1|320265|family with sequence similarity 19, member A1
mm9_v1_chr4_+_85699818_85699939	1.71136	AUUGCAC	NM_029967|Adamtsl1|77739|ADAMTS-like 1	AK020115|Adamtsl1|77739|ADAMTS-like 1	BC062814|Adamtsl1|77739|ADAMTS-like 1	AK045085|Adamtsl1|77739|ADAMTS-like 1	BC139339|Adamtsl1|77739|ADAMTS-like 1	BC139367|Adamtsl1|77739|ADAMTS-like 1
mm9_v1_chr10_-_80488111_80488155	1.69557	AUUGCAC	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chrX_-_140367467_140367853	1.69346	AUUGCAC	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr2_-_90420626_90420803	1.67306	AUUGCAC	AY038891|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AY039232|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147318|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147556|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	D45212|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	NM_008982|Ptprj|19271|protein tyrosine phosphatase, receptor type, J
mm9_v1_chr9_-_56265833_56265857	1.61706	AUUGCAC	AK035440|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	AK048912|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	NM_172924|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene
mm9_v1_chr9_-_86775154_86775279	1.61452	AUUGCAC	M83985|Snap91|20616|synaptosomal-associated protein 91	NM_013669|Snap91|20616|synaptosomal-associated protein 91	BC031773|Snap91|20616|synaptosomal-associated protein 91	AK159570|Snap91|20616|synaptosomal-associated protein 91	AK147087|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr9_-_108092712_108092716	1.54827	AUUGCAC	NM_007567|Bsn|12217|bassoon
mm9_v1_chr7_+_133415982_133416132	1.53179	AUUGCAC	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr5_+_130924661_130924722	1.47778	AUUGCAC	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr10_+_122115755_122115904	1.46192	AUUGCAC	AK043121|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_001110218|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_176919|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK040207|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK077422|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK134804|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK051434|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK220260|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr3_+_45182311_45182350	1.44778	AUUGCAC	BC037259|Pcdh10|18526|protocadherin 10	NM_001098170|Pcdh10|18526|protocadherin 10	NM_001098171|Pcdh10|18526|protocadherin 10	NM_001098172|Pcdh10|18526|protocadherin 10	NM_011043|Pcdh10|18526|protocadherin 10	AK081621|Pcdh10|18526|protocadherin 10	AK081977|Pcdh10|18526|protocadherin 10	BC026712|Pcdh10|18526|protocadherin 10	AK122503|Pcdh10|18526|protocadherin 10
mm9_v1_chr2_+_32006651_32006708	1.44649	AUUGCAC	AK147271|Prrc2b|227723|proline-rich coiled-coil 2B	AK147677|Prrc2b|227723|proline-rich coiled-coil 2B	NM_001159634|Prrc2b|227723|proline-rich coiled-coil 2B	NM_172661|Prrc2b|227723|proline-rich coiled-coil 2B	BC055116|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr2_-_153270059_153270214	1.43434	AUUGCAC	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr2_-_77541328_77541435	1.42658	AUUGCAC	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr2_-_79296732_79296799	1.41983	AUUGCAC	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr11_+_90110701_90110805	1.40403	AUUGCAC	AK033889|Mmd|67468|monocyte to macrophage differentiation-associated	AK007961|Mmd|67468|monocyte to macrophage differentiation-associated	BC021914|Mmd|67468|monocyte to macrophage differentiation-associated	NM_026178|Mmd|67468|monocyte to macrophage differentiation-associated
mm9_v1_chr4_-_136512727_136512761	1.4027	AUUGCAC	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr17_+_8994520_8994643	1.38929	AUUGCAC	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr19_-_60019520_60019556	1.38425	AUUGCAC	AK015534|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001164367|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr14_-_103746016_103746030	1.38243	AUUGCAC	AK149225|Mycbp2|105689|MYC binding protein 2	NM_207215|Mycbp2|105689|MYC binding protein 2	AK048441|Mycbp2|105689|MYC binding protein 2	AK081652|Mycbp2|105689|MYC binding protein 2
mm9_v1_chr18_+_59334993_59335106	1.36631	AUUGCAC	NM_001081328|Chsy3|78923|chondroitin sulfate synthase 3	AK043732|Chsy3|78923|chondroitin sulfate synthase 3	AK044099|Chsy3|78923|chondroitin sulfate synthase 3	AK038429|Chsy3|78923|chondroitin sulfate synthase 3	AK048196|Chsy3|78923|chondroitin sulfate synthase 3	AK220519|Chsy3|78923|chondroitin sulfate synthase 3
mm9_v1_chr1_-_93355893_93355916	1.35499	AUUGCAC	AK159847|Per2|18627|period homolog 2 (Drosophila)	AK165556|Per2|18627|period homolog 2 (Drosophila)	NM_011066|Per2|18627|period homolog 2 (Drosophila)
mm9_v1_chr5_+_107926763_107926815	1.3501	AUUGCAC	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr12_-_32746061_32746210	1.34636	AUUGCAC	BC048710|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK011647|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK138963|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK041013|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	AK135621|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta	NM_011158|Prkar2b|19088|protein kinase, cAMP dependent regulatory, type II beta
mm9_v1_chr1_-_99666564_99666675	1.31278	AUUGCAC	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr7_-_17509228_17509415	1.3057	AUUGCAC	AK169630|Calm3|12315|calmodulin 3	BC050926|Calm3|12315|calmodulin 3	M19380|Calm3|12315|calmodulin 3	AK165568|Calm3|12315|calmodulin 3	AK153179|Calm3|12315|calmodulin 3	AK152754|Calm3|12315|calmodulin 3	AK151610|Calm3|12315|calmodulin 3	NM_007590|Calm3|12315|calmodulin 3
mm9_v1_chr10_+_39451923_39451975	1.30016	AUUGCAC	AK032532|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	BC048946|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	AB031049|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)	NM_011264|Rev3l|19714|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm9_v1_chr16_+_11066390_11066492	1.298	AUUGCAC	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chr11_+_68902025_68902081	1.27231	AUUGCAC	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr14_+_117324518_117324572	1.26422	AUUGCAC	AK164668|Gpc6|23888|glypican 6	AK135442|Gpc6|23888|glypican 6	NM_001079844|Gpc6|23888|glypican 6	NM_011821|Gpc6|23888|glypican 6
mm9_v1_chr10_-_42894259_42894340	1.25278	AUUGCAC	BC059851|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	NM_175407|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr6_+_122824491_122824588	1.23847	AUUGCAC	BC119133|Necap1|67602|NECAP endocytosis associated 1	BC120841|Necap1|67602|NECAP endocytosis associated 1	AK004805|Necap1|67602|NECAP endocytosis associated 1	AK081598|Necap1|67602|NECAP endocytosis associated 1	AK168500|Necap1|67602|NECAP endocytosis associated 1	NM_026267|Necap1|67602|NECAP endocytosis associated 1	BC011466|Necap1|67602|NECAP endocytosis associated 1	AK005263|Necap1|67602|NECAP endocytosis associated 1	BC098227|Necap1|67602|NECAP endocytosis associated 1	AK220236|Necap1|67602|NECAP endocytosis associated 1
mm9_v1_chr3_+_36762025_36762077	1.22451	AUUGCAC	AK172264|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	NM_172679|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK030086|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK041411|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK220265|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene
mm9_v1_chr9_-_62996767_62996767	1.21973	AUUGCAC	AK029916|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163758|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr13_-_59871095_59871179	1.2192	AUUGCAC	AK153820|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	AK169028|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	BC018547|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	AK007415|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	AK045175|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	BC085482|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	AK090000|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)	NM_026921|Isca1|69046|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)
mm9_v1_chr4_+_13678443_13678575	1.21565	AUUGCAC	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr10_+_80755689_80755716	1.21431	AUUGCAC	AK154816|Pip5k1c|18717|phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	AK170286|Pip5k1c|18717|phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	NM_001146687|Pip5k1c|18717|phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	NM_008844|Pip5k1c|18717|phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
mm9_v1_chr4_-_104782444_104782511	1.21359	AUUGCAC	NM_178143|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138565|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138566|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm9_v1_chr16_-_46010510_46010548	1.15099	AUUGCAC	NM_001134480|Plcxd2|433022|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm9_v1_chr3_+_97462134_97462247	1.1469	AUUGCAC	BC060228|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit	NM_182997|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm9_v1_chrX_-_13423666_13423727	1.14163	AUUGCAC	NM_009806|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	Y17137|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	Y17138|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm9_v1_chr6_-_91757386_91757427	1.13911	AUUGCAC	NM_001159507|Grip2|243547|glutamate receptor interacting protein 2
mm9_v1_chr6_+_4853319_4853431	1.12458	AUUGCAC	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr15_+_91881593_91881615	1.10414	AUUGCAC	AK138969|Cntn1|12805|contactin 1	NM_001159648|Cntn1|12805|contactin 1
mm9_v1_chr8_+_93593971_93593997	1.10264	AUUGCAC	AK155256|Rbl2|19651|retinoblastoma-like 2	NM_011250|Rbl2|19651|retinoblastoma-like 2	AK142172|Rbl2|19651|retinoblastoma-like 2
mm9_v1_chr13_-_46060325_46060353	1.08546	AUUGCAC	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr17_-_25570721_25570730	1.07898	AUUGCAC	AB041801|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	AK147242|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	NM_001163691|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	NM_021415|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	AK043501|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm9_v1_chr15_-_76983985_76984241	1.06635	AUUGCAC	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr12_+_30219769_30219800	1.05745	AUUGCAC	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr13_+_55794441_55794492	1.03994	AUUGCAC	AK088693|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	BC051430|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	NM_181278|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr12_+_3806955_3807159	1.01189	AUUGCAC	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr3_+_156224757_156225137	1.0075	AUUGCAC	AK147253|Negr1|320840|neuronal growth regulator 1	NM_001039094|Negr1|320840|neuronal growth regulator 1	AK035218|Negr1|320840|neuronal growth regulator 1	NM_177274|Negr1|320840|neuronal growth regulator 1	AK030503|Negr1|320840|neuronal growth regulator 1	BC146005|Negr1|320840|neuronal growth regulator 1	BC146007|Negr1|320840|neuronal growth regulator 1	AK142298|Negr1|320840|neuronal growth regulator 1	AJ487032|Negr1|320840|neuronal growth regulator 1
mm9_v1_chr19_+_32832002_32832163	0.98939	AUUGCAC	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr15_+_91991704_91991862	0.984541	AUUGCAC	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr16_-_91011339_91011552	0.971236	AUUGCAC	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr11_-_116274264_116274379	0.960463	AUUGCAC	AK011693|Rnf157|217340|ring finger protein 157	NM_027258|Rnf157|217340|ring finger protein 157
mm9_v1_chr17_+_86567003_86567165	0.951852	AUUGCAC	AK082438|Prkce|18754|protein kinase C, epsilon	NM_011104|Prkce|18754|protein kinase C, epsilon	AK042994|Prkce|18754|protein kinase C, epsilon
mm9_v1_chr12_+_4133370_4133572	0.940808	AUUGCAC	NM_001159536|Adcy3|104111|adenylate cyclase 3	NM_001159537|Adcy3|104111|adenylate cyclase 3	AK122298|Adcy3|104111|adenylate cyclase 3	BC057113|Adcy3|104111|adenylate cyclase 3	BC057316|Adcy3|104111|adenylate cyclase 3
mm9_v1_chrX_+_90920450_90920749	0.938095	AUUGCAC	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr6_+_30351902_30351953	0.936753	AUUGCAC	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr7_-_20147745_20147782	0.926381	AUUGCAC	AK160935|Lrrc68|232947|leucine rich repeat containing 68	AK050946|Lrrc68|232947|leucine rich repeat containing 68	NM_199149|Lrrc68|232947|leucine rich repeat containing 68
mm9_v1_chr15_+_78939343_78939412	0.913674	AUUGCAC	AK147646|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1	AK147587|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1	NM_177461|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1
mm9_v1_chr2_-_65405546_65405588	0.912234	AUUGCAC	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr3_-_86724793_86724854	0.899992	AUUGCAC	NM_001195496|Dclk2|70762|doublecortin-like kinase 2	NM_001195497|Dclk2|70762|doublecortin-like kinase 2	NM_001195498|Dclk2|70762|doublecortin-like kinase 2	NM_001195499|Dclk2|70762|doublecortin-like kinase 2	NM_001195500|Dclk2|70762|doublecortin-like kinase 2	NM_027539|Dclk2|70762|doublecortin-like kinase 2
mm9_v1_chr7_-_142129892_142130112	0.894707	AUUGCAC	BC158077|Fam196a|627214|family with sequence similarity 196, member A	BC158080|Fam196a|627214|family with sequence similarity 196, member A	AK046823|Fam196a|627214|family with sequence similarity 196, member A	AK046846|Fam196a|627214|family with sequence similarity 196, member A	AK140373|Fam196a|627214|family with sequence similarity 196, member A	NM_001143802|Fam196a|627214|family with sequence similarity 196, member A
mm9_v1_chr11_+_56825192_56825257	0.888248	AUUGCAC	NM_001113325|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	NM_008165|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr8_-_82581887_82581932	0.881754	AUUGCAC	AF116865|Hhip|15245|Hedgehog-interacting protein	BC053012|Hhip|15245|Hedgehog-interacting protein	AK031539|Hhip|15245|Hedgehog-interacting protein	NM_020259|Hhip|15245|Hedgehog-interacting protein
mm9_v1_chr6_+_115084919_115085009	0.868549	AUUGCAC	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr8_-_41720091_41720170	0.859953	AUUGCAC	AK028160|Mtmr7|54384|myotubularin related protein 7	AK081973|Mtmr7|54384|myotubularin related protein 7	BC032254|Mtmr7|54384|myotubularin related protein 7	AK148768|Mtmr7|54384|myotubularin related protein 7	NM_001040699|Mtmr7|54384|myotubularin related protein 7
mm9_v1_chr10_-_120913138_120913382	0.849093	AUUGCAC	AK167627|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AF332864|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC011511|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	NM_138956|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC071204|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AK155495|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC055023|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3
mm9_v1_chr18_+_10325174_10325177	0.846915	AUUGCAC	AK142556|Greb1l|381157|growth regulation by estrogen in breast cancer-like	NM_001083628|Greb1l|381157|growth regulation by estrogen in breast cancer-like
mm9_v1_chr6_-_24905939_24906124	0.831702	AUUGCAC	BC147241|Tmem229a|319832|transmembrane protein 229A	BC147242|Tmem229a|319832|transmembrane protein 229A	AK140056|Tmem229a|319832|transmembrane protein 229A	AK087465|Tmem229a|319832|transmembrane protein 229A	NM_177013|Tmem229a|319832|transmembrane protein 229A
mm9_v1_chr10_+_21714471_21714488	0.831644	AUUGCAC	NM_011361|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK086892|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK146037|Sgk1|20393|serum/glucocorticoid regulated kinase 1	AK159131|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr6_+_88674697_88674748	0.831045	AUUGCAC	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr5_-_121038602_121038704	0.829127	AUUGCAC	AK037856|Tpcn1|252972|two pore channel 1	AK077411|Tpcn1|252972|two pore channel 1	BC058951|Tpcn1|252972|two pore channel 1	NM_145853|Tpcn1|252972|two pore channel 1	AF217002|Tpcn1|252972|two pore channel 1	AK148129|Tpcn1|252972|two pore channel 1
mm9_v1_chr15_-_38448923_38449033	0.8201	AUUGCAC	BC046814|Azin1|54375|antizyme inhibitor 1	BC021152|Azin1|54375|antizyme inhibitor 1	BC019412|Azin1|54375|antizyme inhibitor 1	AK088112|Azin1|54375|antizyme inhibitor 1	AK088671|Azin1|54375|antizyme inhibitor 1	AK133914|Azin1|54375|antizyme inhibitor 1	AK049680|Azin1|54375|antizyme inhibitor 1	NM_001102458|Azin1|54375|antizyme inhibitor 1	NM_018745|Azin1|54375|antizyme inhibitor 1
mm9_v1_chr17_+_83614611_83614641	0.791172	AUUGCAC	NM_134117|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB381893|Pkdcc|106522|protein kinase domain containing, cytoplasmic	AB436780|Pkdcc|106522|protein kinase domain containing, cytoplasmic	BC086639|Pkdcc|106522|protein kinase domain containing, cytoplasmic
mm9_v1_chr14_+_45970767_45970937	0.790523	AUUGCAC	AK154136|Styx|56291|serine/threonine/tyrosine interaction protein	AK030122|Styx|56291|serine/threonine/tyrosine interaction protein	BC096674|Styx|56291|serine/threonine/tyrosine interaction protein	NM_019637|Styx|56291|serine/threonine/tyrosine interaction protein	AK166043|Styx|56291|serine/threonine/tyrosine interaction protein	AK046970|Styx|56291|serine/threonine/tyrosine interaction protein	AK042741|Styx|56291|serine/threonine/tyrosine interaction protein	U34973|Styx|56291|serine/threonine/tyrosine interaction protein	BC038608|Styx|56291|serine/threonine/tyrosine interaction protein	BC085089|Styx|56291|serine/threonine/tyrosine interaction protein	AK002822|Styx|56291|serine/threonine/tyrosine interaction protein
mm9_v1_chr2_+_10294062_10294208	0.788157	AUUGCAC	AK040600|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_001198809|Sfmbt2|353282|Scm-like with four mbt domains 2	NM_177386|Sfmbt2|353282|Scm-like with four mbt domains 2	AK052339|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115510|Sfmbt2|353282|Scm-like with four mbt domains 2	BC115511|Sfmbt2|353282|Scm-like with four mbt domains 2	AK147651|Sfmbt2|353282|Scm-like with four mbt domains 2
mm9_v1_chr6_-_116143380_116143517	0.776234	AUUGCAC	AK173022|Tmcc1|330401|transmembrane and coiled coil domains 1	NM_177412|Tmcc1|330401|transmembrane and coiled coil domains 1
mm9_v1_chr12_+_113052385_113052495	0.766106	AUUGCAC	AK171099|Zfyve21|68520|zinc finger, FYVE domain containing 21	AK139356|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC019521|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC132248|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC132250|Zfyve21|68520|zinc finger, FYVE domain containing 21	NM_026752|Zfyve21|68520|zinc finger, FYVE domain containing 21	AK003661|Zfyve21|68520|zinc finger, FYVE domain containing 21
mm9_v1_chr15_-_27955602_27955621	0.765055	AUUGCAC	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr2_-_77654669_77654872	0.754748	AUUGCAC	AK079322|Zfp385b|241494|zinc finger protein 385B	AK149352|Zfp385b|241494|zinc finger protein 385B	AK046798|Zfp385b|241494|zinc finger protein 385B	NM_178723|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr2_+_90585526_90585673	0.736348	AUUGCAC	NM_018828|Fnbp4|55935|formin binding protein 4	U40750|Fnbp4|55935|formin binding protein 4
mm9_v1_chr4_-_136913576_136913662	0.724274	AUUGCAC	U37720|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167195|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	BC064792|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167400|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168013|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168076|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168089|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168276|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169232|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK144216|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK167609|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK003098|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK075567|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK145659|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK154870|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK166281|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK051543|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK151726|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168820|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK150563|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168503|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169122|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK169805|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK151087|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK153564|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK168758|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	AK159470|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	NM_009861|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr7_+_63305516_63305584	0.723556	AUUGCAC	NM_010418|Herc2|15204|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm9_v1_chr9_+_58430031_58430196	0.723068	AUUGCAC	NM_009145|Nptn|20320|neuroplastin	BC039191|Nptn|20320|neuroplastin
mm9_v1_chr11_-_95926589_95926740	0.722392	AUUGCAC	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr6_-_18464792_18464824	0.70809	AUUGCAC	AK028980|Cttnbp2|30785|cortactin binding protein 2	AK019384|Cttnbp2|30785|cortactin binding protein 2	BC141407|Cttnbp2|30785|cortactin binding protein 2	NM_080285|Cttnbp2|30785|cortactin binding protein 2
mm9_v1_chr14_+_12386043_12386066	0.697422	AUUGCAC	BC079595|Ptprg|19270|protein tyrosine phosphatase, receptor type, G	NM_008981|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chr1_-_58642994_58643176	0.695171	AUUGCAC	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr7_+_138009310_138009466	0.676161	AUUGCAC	AK053879|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK083340|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK044224|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	BC020017|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	NM_133942|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm9_v1_chr12_+_72932064_72932126	0.672252	AUUGCAC	BC076585|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_026102|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_172464|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK129185|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK165335|Daam1|208846|dishevelled associated activator of morphogenesis 1	BC038403|Daam1|208846|dishevelled associated activator of morphogenesis 1
mm9_v1_chr19_-_60019266_60019313	0.661684	AUUGCAC	AK154916|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001033172|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr10_-_67011689_67011747	0.653038	AUUGCAC	BC057106|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	BC058407|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	AK155334|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	NM_001005419|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase
mm9_v1_chr9_-_52487410_52487541	0.644566	AUUGCAC	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr11_-_115885714_115885820	0.635195	AUUGCAC	BC092300|H3f3b|15081|H3 histone, family 3B	X13605|H3f3b|15081|H3 histone, family 3B	BC021768|H3f3b|15081|H3 histone, family 3B	BC092043|H3f3b|15081|H3 histone, family 3B	BC002052|H3f3b|15081|H3 histone, family 3B	AK169620|H3f3b|15081|H3 histone, family 3B	BC037730|H3f3b|15081|H3 histone, family 3B	AK167828|H3f3b|15081|H3 histone, family 3B	AK153239|H3f3b|15081|H3 histone, family 3B	AK159615|H3f3b|15081|H3 histone, family 3B	AK166605|H3f3b|15081|H3 histone, family 3B	AK168931|H3f3b|15081|H3 histone, family 3B	AK169042|H3f3b|15081|H3 histone, family 3B	AK044933|H3f3b|15081|H3 histone, family 3B	AK151451|H3f3b|15081|H3 histone, family 3B	AK153189|H3f3b|15081|H3 histone, family 3B	AK151274|H3f3b|15081|H3 histone, family 3B	AK151336|H3f3b|15081|H3 histone, family 3B	AK152026|H3f3b|15081|H3 histone, family 3B	AK153294|H3f3b|15081|H3 histone, family 3B	AK153371|H3f3b|15081|H3 histone, family 3B	AK159338|H3f3b|15081|H3 histone, family 3B	AK169226|H3f3b|15081|H3 histone, family 3B	AK146070|H3f3b|15081|H3 histone, family 3B	AK151658|H3f3b|15081|H3 histone, family 3B	AK151661|H3f3b|15081|H3 histone, family 3B	AK151869|H3f3b|15081|H3 histone, family 3B	AK152453|H3f3b|15081|H3 histone, family 3B	AK152455|H3f3b|15081|H3 histone, family 3B	AK152911|H3f3b|15081|H3 histone, family 3B	AK161675|H3f3b|15081|H3 histone, family 3B	AK162426|H3f3b|15081|H3 histone, family 3B	AK168698|H3f3b|15081|H3 histone, family 3B	AK169039|H3f3b|15081|H3 histone, family 3B	AK163244|H3f3b|15081|H3 histone, family 3B	AK002928|H3f3b|15081|H3 histone, family 3B	AK011431|H3f3b|15081|H3 histone, family 3B	AK159807|H3f3b|15081|H3 histone, family 3B	AK159850|H3f3b|15081|H3 histone, family 3B	AK135839|H3f3b|15081|H3 histone, family 3B	AK151222|H3f3b|15081|H3 histone, family 3B	AK152623|H3f3b|15081|H3 histone, family 3B	AK153530|H3f3b|15081|H3 histone, family 3B	NM_008211|H3f3b|15081|H3 histone, family 3B
mm9_v1_chr4_-_46614726_46614844	0.631093	AUUGCAC	AK045728|Coro2a|107684|coronin, actin binding protein 2A	AK033455|Coro2a|107684|coronin, actin binding protein 2A	AK030971|Coro2a|107684|coronin, actin binding protein 2A	AK154247|Coro2a|107684|coronin, actin binding protein 2A	AK170184|Coro2a|107684|coronin, actin binding protein 2A	AK044060|Coro2a|107684|coronin, actin binding protein 2A	AK152490|Coro2a|107684|coronin, actin binding protein 2A	AK153134|Coro2a|107684|coronin, actin binding protein 2A	AK054394|Coro2a|107684|coronin, actin binding protein 2A	NM_001164804|Coro2a|107684|coronin, actin binding protein 2A
mm9_v1_chr9_-_40965548_40965649	0.630255	AUUGCAC	BC053436|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AB075602|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK172288|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK133948|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK035764|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	NM_176860|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B
mm9_v1_chr15_+_40486577_40486623	0.624963	AUUGCAC	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr11_-_103815361_103815405	0.624375	AUUGCAC	BC006627|Nsf|18195|N-ethylmaleimide sensitive fusion protein	NM_008740|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr2_+_21289168_21289199	0.624283	AUUGCAC	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr5_-_73647856_73647874	0.622109	AUUGCAC	AK164590|Fryl|72313|furry homolog-like (Drosophila)	NM_028194|Fryl|72313|furry homolog-like (Drosophila)
mm9_v1_chr1_-_54983211_54983245	0.61904	AUUGCAC	AK038343|Ankrd44|329154|ankyrin repeat domain 44	NM_001081433|Ankrd44|329154|ankyrin repeat domain 44
mm9_v1_chr4_+_97444312_97444317	0.604028	AUUGCAC	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr15_-_38944199_38944296	0.602094	AUUGCAC	AK172597|Slc25a32|69906|solute carrier family 25, member 32	AK145178|Slc25a32|69906|solute carrier family 25, member 32	AK172029|Slc25a32|69906|solute carrier family 25, member 32	AK170643|Slc25a32|69906|solute carrier family 25, member 32	NM_172402|Slc25a32|69906|solute carrier family 25, member 32
mm9_v1_chr6_+_137200819_137200985	0.60198	AUUGCAC	NM_001164401|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_011216|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	AK045929|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	AF135166|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	BC052743|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr10_+_27794625_27794662	0.600582	AUUGCAC	NM_008983|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK078614|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC138376|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC145261|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK083006|Ptprk|19272|protein tyrosine phosphatase, receptor type, K
mm9_v1_chr8_+_68141935_68142010	0.599104	AUUGCAC	AK013582|March1|72925|membrane-associated ring finger (C3HC4) 1	NM_001166372|March1|72925|membrane-associated ring finger (C3HC4) 1	AK086052|March1|72925|membrane-associated ring finger (C3HC4) 1	AK137337|March1|72925|membrane-associated ring finger (C3HC4) 1	AK160684|March1|72925|membrane-associated ring finger (C3HC4) 1
mm9_v1_chr16_-_91044623_91044646	0.590121	AUUGCAC	NM_026110|Gcfc1|67367|GC-rich sequence DNA-binding factor 1
mm9_v1_chr18_+_69504145_69504185	0.589187	AUUGCAC	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr7_-_118226515_118226580	0.584966	AUUGCAC	AK150745|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK151637|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK144309|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	U76112|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC057673|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC127064|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_001040131|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_013507|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr15_-_77137425_77137482	0.56878	AUUGCAC	AK139555|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110827|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_053104|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_175387|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr1_+_63492447_63492511	0.562738	AUUGCAC	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr19_-_6915038_6915131	0.560665	AUUGCAC	AK195314|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AF074714|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	NM_019924|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK089467|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK154674|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	BC012964|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4
mm9_v1_chr12_+_82732188_82732357	0.556012	AUUGCAC	AK172918|Ttc9|69480|tetratricopeptide repeat domain 9	BC028891|Ttc9|69480|tetratricopeptide repeat domain 9	AK133456|Ttc9|69480|tetratricopeptide repeat domain 9	NM_001033149|Ttc9|69480|tetratricopeptide repeat domain 9	BC139242|Ttc9|69480|tetratricopeptide repeat domain 9	BC139244|Ttc9|69480|tetratricopeptide repeat domain 9
mm9_v1_chr7_+_35904310_35904321	0.551909	AUUGCAC	NM_007678|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC011118|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC028890|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC051102|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	BC058161|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr6_-_39675456_39675512	0.549195	AUUGCAC	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr3_+_33699111_33699116	0.549031	AUUGCAC	AK031605|Ttc14|67120|tetratricopeptide repeat domain 14	AK134539|Ttc14|67120|tetratricopeptide repeat domain 14	NM_025978|Ttc14|67120|tetratricopeptide repeat domain 14	NM_027619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr19_+_38911056_38911166	0.548712	AUUGCAC	AK172979|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	NM_145952|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138056|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138057|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC145129|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12
mm9_v1_chr14_-_27783615_27783757	0.547569	AUUGCAC	AK030445|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK045438|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK088080|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AY113705|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK033566|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK146356|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK049307|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	NM_145221|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	BC063751|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm9_v1_chr16_-_5049999_5050021	0.54329	AUUGCAC	NM_001079814|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)	NM_028720|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)
mm9_v1_chr11_-_20731016_20731238	0.542676	AUUGCAC	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr18_-_46372017_46372260	0.53531	AUUGCAC	AY251389|Trim36|28105|tripartite motif-containing 36	AB103063|Trim36|28105|tripartite motif-containing 36	BC058106|Trim36|28105|tripartite motif-containing 36	NM_178872|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr5_+_111308801_111308858	0.50454	AUUGCAC	NM_024477|Ttc28|209683|tetratricopeptide repeat domain 28	AK009368|Ttc28|209683|tetratricopeptide repeat domain 28
mm9_v1_chrX_-_103124651_103124717	0.499391	AUUGCAC	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr11_-_61743706_61743758	0.492756	AUUGCAC	AK049399|Akap10|56697|A kinase (PRKA) anchor protein 10	AK083255|Akap10|56697|A kinase (PRKA) anchor protein 10	NM_019921|Akap10|56697|A kinase (PRKA) anchor protein 10	AK162966|Akap10|56697|A kinase (PRKA) anchor protein 10
mm9_v1_chr15_-_90509751_90509818	0.491466	AUUGCAC	AK005311|Cpne8|66871|copine VIII	BC076564|Cpne8|66871|copine VIII	BC017626|Cpne8|66871|copine VIII	AK013407|Cpne8|66871|copine VIII	AK004559|Cpne8|66871|copine VIII	BC138745|Cpne8|66871|copine VIII	BC138746|Cpne8|66871|copine VIII	AK010227|Cpne8|66871|copine VIII	BC048551|Cpne8|66871|copine VIII	NM_001033851|Cpne8|66871|copine VIII	NM_025815|Cpne8|66871|copine VIII
mm9_v1_chr1_-_186823350_186823427	0.482625	AUUGCAC	AB185282|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	BC112400|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	AF453686|Mark1|226778|MAP/microtubule affinity-regulating kinase 1	NM_145515|Mark1|226778|MAP/microtubule affinity-regulating kinase 1
mm9_v1_chr7_-_28231535_28231646	0.477483	AUUGCAC	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr4_+_13670425_13670448	0.476445	AUUGCAC	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr14_-_76154241_76154387	0.470036	AUUGCAC	AK140362|Cog3|338337|component of oligomeric golgi complex 3	NM_177381|Cog3|338337|component of oligomeric golgi complex 3	BC038030|Cog3|338337|component of oligomeric golgi complex 3
mm9_v1_chr1_-_167390568_167390623	0.469686	AUUGCAC	NM_028759|Dcaf6|74106|DDB1 and CUL4 associated factor 6
mm9_v1_chr9_-_97011440_97011575	0.459061	AUUGCAC	BC008171|Slc25a36|192287|solute carrier family 25, member 36	AK078779|Slc25a36|192287|solute carrier family 25, member 36	NM_138756|Slc25a36|192287|solute carrier family 25, member 36	AK042075|Slc25a36|192287|solute carrier family 25, member 36	AK053646|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr2_-_35056582_35056639	0.456387	AUUGCAC	AK160859|Rab14|68365|RAB14, member RAS oncogene family	NM_026697|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr4_+_62876389_62876445	0.454898	AUUGCAC	AK157951|Col27a1|373864|collagen, type XXVII, alpha 1	NM_025685|Col27a1|373864|collagen, type XXVII, alpha 1
mm9_v1_chr5_-_3803095_3803144	0.454376	AUUGCAC	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr16_+_10545479_10545491	0.451019	AUUGCAC	AK122255|Clec16a|74374|C-type lectin domain family 16, member A	NM_177562|Clec16a|74374|C-type lectin domain family 16, member A	AK155314|Clec16a|74374|C-type lectin domain family 16, member A
mm9_v1_chr17_+_74888823_74888973	0.445209	AUUGCAC	AK166347|Yipf4|67864|Yip1 domain family, member 4	AK009618|Yipf4|67864|Yip1 domain family, member 4	AK083301|Yipf4|67864|Yip1 domain family, member 4	NM_026417|Yipf4|67864|Yip1 domain family, member 4	AK017721|Yipf4|67864|Yip1 domain family, member 4	AK017722|Yipf4|67864|Yip1 domain family, member 4	AK159227|Yipf4|67864|Yip1 domain family, member 4	BC003936|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr9_+_13632152_13632249	0.438455	AUUGCAC	AK145026|Fam76b|72826|family with sequence similarity 76, member B	BC043120|Fam76b|72826|family with sequence similarity 76, member B	NM_176836|Fam76b|72826|family with sequence similarity 76, member B	AK052430|Fam76b|72826|family with sequence similarity 76, member B	BC050870|Fam76b|72826|family with sequence similarity 76, member B
mm9_v1_chr10_+_79179326_79179429	0.429176	AUUGCAC	AJ225122|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	NM_008226|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2	AB154248|Hcn2|15166|hyperpolarization-activated, cyclic nucleotide-gated K+ 2
mm9_v1_chr11_-_59041767_59041787	0.427231	AUUGCAC	NM_007476|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr6_+_88674398_88674540	0.424789	AUUGCAC	NM_001166249|Mgll|23945|monoglyceride lipase	NM_011844|Mgll|23945|monoglyceride lipase	AK131645|Mgll|23945|monoglyceride lipase	AK028008|Mgll|23945|monoglyceride lipase	AK148242|Mgll|23945|monoglyceride lipase	AK148395|Mgll|23945|monoglyceride lipase	AJ001118|Mgll|23945|monoglyceride lipase	BC057965|Mgll|23945|monoglyceride lipase	AK215869|Mgll|23945|monoglyceride lipase	AK185666|Mgll|23945|monoglyceride lipase	AK188627|Mgll|23945|monoglyceride lipase	AK206822|Mgll|23945|monoglyceride lipase	AK208240|Mgll|23945|monoglyceride lipase	AK211363|Mgll|23945|monoglyceride lipase
mm9_v1_chr2_-_153355706_153355706	0.411144	AUUGCAC	AK147524|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001134300|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr14_+_121434765_121434823	0.410731	AUUGCAC	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr1_+_160292470_160292548	0.409023	AUUGCAC	AK164117|Astn1|11899|astrotactin 1	NM_007495|Astn1|11899|astrotactin 1	BC094666|Astn1|11899|astrotactin 1
mm9_v1_chr1_+_153602492_153602592	0.406056	AUUGCAC	AB188342|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	NM_001039644|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK141326|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	AK143252|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138658|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC138659|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145357|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3	BC145358|Edem3|66967|ER degradation enhancer, mannosidase alpha-like 3
mm9_v1_chr11_+_51577152_51577250	0.40406	AUUGCAC	NM_025535|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK002327|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK155429|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	BC082550|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK150906|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	BC085178|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)	AK013559|Sar1b|66397|SAR1 gene homolog B (S. cerevisiae)
mm9_v1_chr11_+_49607656_49607690	0.402641	AUUGCAC	NM_013529|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	AK053670|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	BC031928|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2	AB016780|Gfpt2|14584|glutamine fructose-6-phosphate transaminase 2
mm9_v1_chr5_-_145726643_145726766	0.401801	AUUGCAC	AK154491|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1	NM_001038627|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1	NM_029438|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1	BC029097|Smurf1|75788|SMAD specific E3 ubiquitin protein ligase 1
mm9_v1_chr7_+_117771170_117771184	0.390688	AUUGCAC	AK144181|Adm|11535|adrenomedullin	AK144649|Adm|11535|adrenomedullin	AK144600|Adm|11535|adrenomedullin	AK171066|Adm|11535|adrenomedullin	NM_009627|Adm|11535|adrenomedullin	U77630|Adm|11535|adrenomedullin	BC052665|Adm|11535|adrenomedullin
mm9_v1_chr9_-_66767436_66767566	0.389238	AUUGCAC	AB232601|Rab8b|235442|RAB8B, member RAS oncogene family	AK031251|Rab8b|235442|RAB8B, member RAS oncogene family	BC157974|Rab8b|235442|RAB8B, member RAS oncogene family	AK051218|Rab8b|235442|RAB8B, member RAS oncogene family	AK084650|Rab8b|235442|RAB8B, member RAS oncogene family	AK155621|Rab8b|235442|RAB8B, member RAS oncogene family	BC059208|Rab8b|235442|RAB8B, member RAS oncogene family	NM_173413|Rab8b|235442|RAB8B, member RAS oncogene family
mm9_v1_chr5_+_139676589_139676634	0.385407	AUUGCAC	AK014585|Sun1|77053|Sad1 and UNC84 domain containing 1	AK036187|Sun1|77053|Sad1 and UNC84 domain containing 1	AK161959|Sun1|77053|Sad1 and UNC84 domain containing 1	AK162533|Sun1|77053|Sad1 and UNC84 domain containing 1	AK167686|Sun1|77053|Sad1 and UNC84 domain containing 1	BC048156|Sun1|77053|Sad1 and UNC84 domain containing 1	BC047928|Sun1|77053|Sad1 and UNC84 domain containing 1	NM_024451|Sun1|77053|Sad1 and UNC84 domain containing 1	AK160281|Sun1|77053|Sad1 and UNC84 domain containing 1
mm9_v1_chr17_+_27993426_27993458	0.378945	AUUGCAC	AK089790|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	AK144200|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	AK220293|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	NM_001080769|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1
mm9_v1_chr13_+_91600662_91600791	0.376248	AUUGCAC	BC002176|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024186|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024272|Ssbp2|66970|single-stranded DNA binding protein 2	AK133699|Ssbp2|66970|single-stranded DNA binding protein 2	AK051840|Ssbp2|66970|single-stranded DNA binding protein 2	AK010220|Ssbp2|66970|single-stranded DNA binding protein 2	AY037837|Ssbp2|66970|single-stranded DNA binding protein 2	AK005150|Ssbp2|66970|single-stranded DNA binding protein 2	AK013177|Ssbp2|66970|single-stranded DNA binding protein 2	AY167988|Ssbp2|66970|single-stranded DNA binding protein 2
mm9_v1_chr19_+_16207300_16207320	0.369339	AUUGCAC	AK147393|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide	NM_008139|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr2_+_163428044_163428072	0.36922	AUUGCAC	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr10_+_114822009_114822046	0.368554	AUUGCAC	AK145652|Zfc3h1|216345|zinc finger, C3H1-type containing	NM_001033261|Zfc3h1|216345|zinc finger, C3H1-type containing
mm9_v1_chr3_+_95462640_95462703	0.360421	AUUGCAC	NM_008562|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr2_+_62502329_62502489	0.360245	AUUGCAC	AK046347|Gca|227960|grancalcin	AK050540|Gca|227960|grancalcin	AK033740|Gca|227960|grancalcin	AK040549|Gca|227960|grancalcin	AK049317|Gca|227960|grancalcin	AK078915|Gca|227960|grancalcin	NM_145523|Gca|227960|grancalcin	AF518325|Gca|227960|grancalcin	BC021450|Gca|227960|grancalcin	AB088388|Gca|227960|grancalcin
mm9_v1_chr14_-_48188088_48188108	0.358041	AUUGCAC	AK029330|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK029967|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	BC090995|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK054196|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	NM_172599|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)
mm9_v1_chr11_+_45869473_45869501	0.356734	AUUGCAC	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr12_-_4484059_4484074	0.356593	AUUGCAC	NM_010881|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr4_+_17780628_17780643	0.353504	AUUGCAC	BC057926|Mmp16|17389|matrix metallopeptidase 16	NM_019724|Mmp16|17389|matrix metallopeptidase 16
mm9_v1_chr7_-_119302546_119302570	0.351445	AUUGCAC	AF177400|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AJ243964|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK004853|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	NM_015814|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)
mm9_v1_chr6_+_110595586_110595619	0.351087	AUUGCAC	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr13_-_111070392_111070417	0.349347	AUUGCAC	AK014050|Rab3c|67295|RAB3C, member RAS oncogene family	NM_023852|Rab3c|67295|RAB3C, member RAS oncogene family
mm9_v1_chr17_+_6106829_6106853	0.345345	AUUGCAC	NM_001103181|Tulp4|68842|tubby like protein 4
mm9_v1_chr19_+_3851772_3851838	0.34018	AUUGCAC	AK005057|Chka|12660|choline kinase alpha	NM_001025566|Chka|12660|choline kinase alpha	NM_013490|Chka|12660|choline kinase alpha	AK014174|Chka|12660|choline kinase alpha	BC060218|Chka|12660|choline kinase alpha	AK052056|Chka|12660|choline kinase alpha	AK053818|Chka|12660|choline kinase alpha	AK166465|Chka|12660|choline kinase alpha	AK166641|Chka|12660|choline kinase alpha
mm9_v1_chr8_+_109817355_109817761	0.339687	AUUGCAC	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr2_+_153117135_153117203	0.334686	AUUGCAC	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr7_-_29177654_29177722	0.332932	AUUGCAC	BC083314|Med29|67224|mediator complex subunit 29	BC023192|Med29|67224|mediator complex subunit 29	AK005112|Med29|67224|mediator complex subunit 29	AK013006|Med29|67224|mediator complex subunit 29	NM_026042|Med29|67224|mediator complex subunit 29
mm9_v1_chr7_+_127821093_127821157	0.327702	AUUGCAC	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chr6_-_98978185_98978383	0.321031	AUUGCAC	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr4_+_132925684_132925804	0.317852	AUUGCAC	AK150135|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	AK165501|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	NM_016981|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1	BC052708|Slc9a1|20544|solute carrier family 9 (sodium/hydrogen exchanger), member 1
mm9_v1_chr14_-_68551487_68551628	0.315607	AUUGCAC	AK147975|Dock5|68813|dedicator of cytokinesis 5	BC158046|Dock5|68813|dedicator of cytokinesis 5	BC158135|Dock5|68813|dedicator of cytokinesis 5	BC158138|Dock5|68813|dedicator of cytokinesis 5	AK053909|Dock5|68813|dedicator of cytokinesis 5	NM_177780|Dock5|68813|dedicator of cytokinesis 5
mm9_v1_chr7_-_75893927_75894127	0.306807	AUUGCAC	DQ861996|Arrdc4|66412|arrestin domain containing 4	BC017528|Arrdc4|66412|arrestin domain containing 4	AK010022|Arrdc4|66412|arrestin domain containing 4	AK037198|Arrdc4|66412|arrestin domain containing 4	NM_001042592|Arrdc4|66412|arrestin domain containing 4	NM_025549|Arrdc4|66412|arrestin domain containing 4	AK010352|Arrdc4|66412|arrestin domain containing 4
mm9_v1_chr14_+_118536326_118536519	0.306179	AUUGCAC	NM_021434|Gpr180|58245|G protein-coupled receptor 180	AK169908|Gpr180|58245|G protein-coupled receptor 180	AB041545|Gpr180|58245|G protein-coupled receptor 180	AK170316|Gpr180|58245|G protein-coupled receptor 180	BC055726|Gpr180|58245|G protein-coupled receptor 180	AK053422|Gpr180|58245|G protein-coupled receptor 180	BC069981|Gpr180|58245|G protein-coupled receptor 180	AK212055|Gpr180|58245|G protein-coupled receptor 180
mm9_v1_chr10_+_21601968_21601989	0.305139	AUUGCAC	BC070401|Sgk1|20393|serum/glucocorticoid regulated kinase 1	NM_001161845|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chrX_-_17149313_17149460	0.299827	AUUGCAC	BC012515|Fundc1|72018|FUN14 domain containing 1	AK168868|Fundc1|72018|FUN14 domain containing 1	BC030487|Fundc1|72018|FUN14 domain containing 1	AK005163|Fundc1|72018|FUN14 domain containing 1	NM_028058|Fundc1|72018|FUN14 domain containing 1
mm9_v1_chr14_+_21493519_21493615	0.295074	AUUGCAC	AK036519|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_001168273|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	NM_172596|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK011880|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	AK122199|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)	BC040370|Sec24c|218811|Sec24 related gene family, member C (S. cerevisiae)
mm9_v1_chr14_-_94287950_94288026	0.282719	AUUGCAC	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr3_+_116215963_116215996	0.281725	AUUGCAC	AK165959|Dbt|13171|dihydrolipoamide branched chain transacylase E2	NM_010022|Dbt|13171|dihydrolipoamide branched chain transacylase E2
mm9_v1_chr4_+_129138915_129138922	0.279076	AUUGCAC	BC049111|Bsdc1|100383|BSD domain containing 1	NM_133889|Bsdc1|100383|BSD domain containing 1
mm9_v1_chr9_-_44096170_44096326	0.274156	AUUGCAC	AY040865|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF411084|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AJ426047|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AF425077|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	BC016200|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	AK043147|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4	NM_138955|Abcg4|192663|ATP-binding cassette, sub-family G (WHITE), member 4
mm9_v1_chr8_+_36650839_36650928	0.273759	AUUGCAC	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr2_-_181327165_181327210	0.27093	AUUGCAC	AK129308|Znf512b|269401|zinc finger protein 512B	NM_001164597|Znf512b|269401|zinc finger protein 512B
mm9_v1_chr1_+_179374783_179374796	0.264009	AUUGCAC	BC089333|Zfp238|30928|zinc finger protein 238	NM_001012330|Zfp238|30928|zinc finger protein 238
mm9_v1_chr12_-_92828896_92828926	0.258447	AUUGCAC	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr2_-_38920925_38921012	0.256176	AUUGCAC	BC043090|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	NM_029793|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK028516|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC024637|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	BC053068|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK002954|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK008972|Golga1|76899|golgi autoantigen, golgin subfamily a, 1	AK044987|Golga1|76899|golgi autoantigen, golgin subfamily a, 1
mm9_v1_chr8_-_74009902_74009965	0.255603	AUUGCAC	NM_001164679|Ano8|382014|anoctamin 8
mm9_v1_chr9_+_108893946_108894060	0.249364	AUUGCAC	BC057594|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	EU571215|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	NM_173019|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	EU571216|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	EU571217|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AK155172|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY646092|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY707862|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY756065|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY756066|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	AY756067|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	DQ350638|Pfkfb4|270198|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
mm9_v1_chr8_+_108535363_108535459	0.245889	AUUGCAC	AK009391|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	AK077451|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	NM_025518|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	BC116934|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)	BC116936|Dus2l|66369|dihydrouridine synthase 2-like (SMM1, S. cerevisiae)
mm9_v1_chr5_-_151992724_151992782	0.2453	AUUGCAC	AK148227|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	AK050259|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_001163493|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_146258|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	BC027830|Stard13|243362|StAR-related lipid transfer (START) domain containing 13
mm9_v1_chr8_+_93352723_93352742	0.241677	AUUGCAC	AK034446|Chd9|109151|chromodomain helicase DNA binding protein 9	NM_177224|Chd9|109151|chromodomain helicase DNA binding protein 9	AK039562|Chd9|109151|chromodomain helicase DNA binding protein 9	DQ127229|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr2_+_71624985_71625139	0.22524	AUUGCAC	AK018033|Itga6|16403|integrin alpha 6	BC049132|Itga6|16403|integrin alpha 6	BC058095|Itga6|16403|integrin alpha 6	X69902|Itga6|16403|integrin alpha 6	AK034186|Itga6|16403|integrin alpha 6	NM_008397|Itga6|16403|integrin alpha 6
mm9_v1_chr3_-_27609279_27609407	0.223297	AUUGCAC	AB098596|Fndc3b|72007|fibronectin type III domain containing 3B	AK147346|Fndc3b|72007|fibronectin type III domain containing 3B	AK220297|Fndc3b|72007|fibronectin type III domain containing 3B	NM_173182|Fndc3b|72007|fibronectin type III domain containing 3B	BC067389|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr1_-_157820378_157820386	0.222718	AUUGCAC	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr16_+_33380860_33381006	0.213442	AUUGCAC	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr5_+_13399301_13399308	0.212134	AUUGCAC	D85028|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	NM_009152|Sema3a|20346|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm9_v1_chr11_+_35582969_35582996	0.209902	AUUGCAC	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr8_+_86590718_86590827	0.208196	AUUGCAC	AK147790|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK036208|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK044607|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	NM_009055|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	BC057018|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK083571|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	X76088|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)
mm9_v1_chr11_-_6100453_6100453	0.201727	AUUGCAC	NM_173748|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr16_-_91597886_91597995	0.201327	AUUGCAC	AK098154|Tmem50b|77975|transmembrane protein 50B	AK150773|Tmem50b|77975|transmembrane protein 50B	AK172335|Tmem50b|77975|transmembrane protein 50B	AK170684|Tmem50b|77975|transmembrane protein 50B	BC004841|Tmem50b|77975|transmembrane protein 50B	NM_030018|Tmem50b|77975|transmembrane protein 50B	AK020977|Tmem50b|77975|transmembrane protein 50B	AK152190|Tmem50b|77975|transmembrane protein 50B	AK152767|Tmem50b|77975|transmembrane protein 50B	AK133966|Tmem50b|77975|transmembrane protein 50B	AK151796|Tmem50b|77975|transmembrane protein 50B	AK155082|Tmem50b|77975|transmembrane protein 50B
mm9_v1_chr11_+_75401554_75401692	0.201208	AUUGCAC	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr11_-_103273956_103274013	0.199938	AUUGCAC	BC053079|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	NM_183034|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	AK155357|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1	AK157752|Plekhm1|353047|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm9_v1_chr5_-_69732915_69732947	0.187552	AUUGCAC	AK039167|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK043351|Kctd8|243043|potassium channel tetramerisation domain containing 8	AK047519|Kctd8|243043|potassium channel tetramerisation domain containing 8	AY615967|Kctd8|243043|potassium channel tetramerisation domain containing 8	NM_175519|Kctd8|243043|potassium channel tetramerisation domain containing 8
mm9_v1_chr12_+_35731853_35731876	0.185986	AUUGCAC	AK154425|Snx13|217463|sorting nexin 13	NM_001014973|Snx13|217463|sorting nexin 13	AK166180|Snx13|217463|sorting nexin 13	BC067201|Snx13|217463|sorting nexin 13
mm9_v1_chr10_-_59414516_59414582	0.184584	AUUGCAC	BC131992|Ddit4|74747|DNA-damage-inducible transcript 4	BC132645|Ddit4|74747|DNA-damage-inducible transcript 4	BC145370|Ddit4|74747|DNA-damage-inducible transcript 4	AK017926|Ddit4|74747|DNA-damage-inducible transcript 4	NM_029083|Ddit4|74747|DNA-damage-inducible transcript 4	AK081046|Ddit4|74747|DNA-damage-inducible transcript 4
mm9_v1_chr5_+_30890386_30890554	0.182295	AUUGCAC	AF065162|Kcnk3|16527|potassium channel, subfamily K, member 3	BC032047|Kcnk3|16527|potassium channel, subfamily K, member 3	NM_010608|Kcnk3|16527|potassium channel, subfamily K, member 3	AB013345|Kcnk3|16527|potassium channel, subfamily K, member 3
mm9_v1_chr18_-_77952721_77952748	0.18157	AUUGCAC	AK046785|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK033209|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK163840|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_178670|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr13_+_54167169_54167276	0.177392	AUUGCAC	AK012650|Sfxn1|14057|sideroflexin 1	NM_027324|Sfxn1|14057|sideroflexin 1	AF325260|Sfxn1|14057|sideroflexin 1	BC005743|Sfxn1|14057|sideroflexin 1	AK151110|Sfxn1|14057|sideroflexin 1
mm9_v1_chr5_+_54200858_54200899	0.17675	AUUGCAC	NM_144517|Tbc1d19|67249|TBC1 domain family, member 19	AK083084|Tbc1d19|67249|TBC1 domain family, member 19
mm9_v1_chr12_-_45311020_45311067	0.175494	AUUGCAC	AB028857|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	BC096676|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	AK005475|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9	NM_013760|Dnajb9|27362|DnaJ (Hsp40) homolog, subfamily B, member 9
mm9_v1_chr9_-_4796141_4796273	0.170934	AUUGCAC	BC060697|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK031568|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK047179|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK032103|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113180|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113181|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_019691|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm9_v1_chr13_-_97312427_97312533	0.16814	AUUGCAC	AB027563|Polk|27015|polymerase (DNA directed), kappa	AF163571|Polk|27015|polymerase (DNA directed), kappa	NM_012048|Polk|27015|polymerase (DNA directed), kappa	AK138299|Polk|27015|polymerase (DNA directed), kappa	BC052820|Polk|27015|polymerase (DNA directed), kappa	AK042272|Polk|27015|polymerase (DNA directed), kappa
mm9_v1_chr11_-_102417457_102417523	0.163967	AUUGCAC	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr18_-_12394830_12394911	0.162543	AUUGCAC	AK044878|Npc1|18145|Niemann Pick type C1	AK170880|Npc1|18145|Niemann Pick type C1	AK171371|Npc1|18145|Niemann Pick type C1	AK087174|Npc1|18145|Niemann Pick type C1	AF003348|Npc1|18145|Niemann Pick type C1	AK040367|Npc1|18145|Niemann Pick type C1	BC052437|Npc1|18145|Niemann Pick type C1	BC054539|Npc1|18145|Niemann Pick type C1	NM_008720|Npc1|18145|Niemann Pick type C1
mm9_v1_chr2_-_120229789_120229851	0.146089	AUUGCAC	AK086738|Tmem87a|211499|transmembrane protein 87A	BC004047|Tmem87a|211499|transmembrane protein 87A	AK044591|Tmem87a|211499|transmembrane protein 87A	AK134268|Tmem87a|211499|transmembrane protein 87A	AK137137|Tmem87a|211499|transmembrane protein 87A	BC027354|Tmem87a|211499|transmembrane protein 87A	AK088559|Tmem87a|211499|transmembrane protein 87A	NM_001110496|Tmem87a|211499|transmembrane protein 87A	NM_001110497|Tmem87a|211499|transmembrane protein 87A	NM_173734|Tmem87a|211499|transmembrane protein 87A
mm9_v1_chr2_+_103809709_103809717	0.145889	AUUGCAC	NM_001142336|Lmo2|16909|LIM domain only 2
mm9_v1_chr6_-_35489875_35489887	0.144136	AUUGCAC	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr2_-_104334610_104334646	0.143536	AUUGCAC	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr13_+_45485106_45485325	0.142045	AUUGCAC	AK034887|Mylip|218203|myosin regulatory light chain interacting protein	AK159478|Mylip|218203|myosin regulatory light chain interacting protein	NM_153789|Mylip|218203|myosin regulatory light chain interacting protein	AK171888|Mylip|218203|myosin regulatory light chain interacting protein	BC010206|Mylip|218203|myosin regulatory light chain interacting protein	AY434449|Mylip|218203|myosin regulatory light chain interacting protein	NM_181043|Mylip|218203|myosin regulatory light chain interacting protein
mm9_v1_chr10_-_116585527_116585608	0.137918	AUUGCAC	BC043109|Frs2|327826|fibroblast growth factor receptor substrate 2	NM_177798|Frs2|327826|fibroblast growth factor receptor substrate 2	AK028813|Frs2|327826|fibroblast growth factor receptor substrate 2	AK163442|Frs2|327826|fibroblast growth factor receptor substrate 2	BC055334|Frs2|327826|fibroblast growth factor receptor substrate 2	AK138144|Frs2|327826|fibroblast growth factor receptor substrate 2
mm9_v1_chr12_+_33063653_33063723	0.137168	AUUGCAC	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr8_+_74842931_74842964	0.136951	AUUGCAC	U25096|Klf2|16598|Kruppel-like factor 2 (lung)	BC138737|Klf2|16598|Kruppel-like factor 2 (lung)	BC138738|Klf2|16598|Kruppel-like factor 2 (lung)	AK131962|Klf2|16598|Kruppel-like factor 2 (lung)	NM_008452|Klf2|16598|Kruppel-like factor 2 (lung)
mm9_v1_chr15_-_79233664_79233756	0.135528	AUUGCAC	AK048138|Tmem184b|223693|transmembrane protein 184b	AK028196|Tmem184b|223693|transmembrane protein 184b	AK029129|Tmem184b|223693|transmembrane protein 184b	AK170086|Tmem184b|223693|transmembrane protein 184b	AK149366|Tmem184b|223693|transmembrane protein 184b	AK158789|Tmem184b|223693|transmembrane protein 184b	NM_172608|Tmem184b|223693|transmembrane protein 184b
mm9_v1_chr10_+_21712008_21712034	0.130506	AUUGCAC	NM_001161849|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr11_+_66891799_66891859	0.128499	AUUGCAC	AY963798|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic	NM_001099635|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic	DQ021874|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic	DQ021875|Myh3|17883|myosin, heavy polypeptide 3, skeletal muscle, embryonic
mm9_v1_chr10_-_13272899_13272947	0.12767	AUUGCAC	BC037606|Pex3|56535|peroxisomal biogenesis factor 3	AK005315|Pex3|56535|peroxisomal biogenesis factor 3	AK012827|Pex3|56535|peroxisomal biogenesis factor 3	AK146934|Pex3|56535|peroxisomal biogenesis factor 3	NM_001164195|Pex3|56535|peroxisomal biogenesis factor 3	NM_019961|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr7_-_112548498_112548560	0.126667	AUUGCAC	BC018464|Fam160a2|74349|family with sequence similarity 160, member A2	AK154173|Fam160a2|74349|family with sequence similarity 160, member A2	AK155273|Fam160a2|74349|family with sequence similarity 160, member A2	AK085350|Fam160a2|74349|family with sequence similarity 160, member A2	AK159716|Fam160a2|74349|family with sequence similarity 160, member A2	BC063093|Fam160a2|74349|family with sequence similarity 160, member A2	NM_199009|Fam160a2|74349|family with sequence similarity 160, member A2	AK169996|Fam160a2|74349|family with sequence similarity 160, member A2
mm9_v1_chr5_-_69983484_69983543	0.12503	AUUGCAC	AK220275|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK171299|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK166601|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	BC004084|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	NM_001038015|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK014950|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK015527|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK017588|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK051596|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK141408|Gnpda2|67980|glucosamine-6-phosphate deaminase 2	AK168516|Gnpda2|67980|glucosamine-6-phosphate deaminase 2
mm9_v1_chr4_+_48137778_48137803	0.124415	AUUGCAC	AK014718|Stx17|67727|syntaxin 17	AK154503|Stx17|67727|syntaxin 17	NM_026343|Stx17|67727|syntaxin 17	AK011400|Stx17|67727|syntaxin 17	AK135240|Stx17|67727|syntaxin 17	AK018526|Stx17|67727|syntaxin 17	AK034718|Stx17|67727|syntaxin 17	BC028639|Stx17|67727|syntaxin 17
mm9_v1_chr11_-_59041663_59041762	0.121349	AUUGCAC	NM_001130408|Arf1|11840|ADP-ribosylation factor 1	AK152479|Arf1|11840|ADP-ribosylation factor 1	BC021403|Arf1|11840|ADP-ribosylation factor 1	AK170586|Arf1|11840|ADP-ribosylation factor 1	AK151696|Arf1|11840|ADP-ribosylation factor 1	AK168081|Arf1|11840|ADP-ribosylation factor 1	AK167000|Arf1|11840|ADP-ribosylation factor 1	AK151821|Arf1|11840|ADP-ribosylation factor 1	AK152382|Arf1|11840|ADP-ribosylation factor 1	AK152015|Arf1|11840|ADP-ribosylation factor 1	AK167543|Arf1|11840|ADP-ribosylation factor 1	AK169166|Arf1|11840|ADP-ribosylation factor 1	D87898|Arf1|11840|ADP-ribosylation factor 1	AK170092|Arf1|11840|ADP-ribosylation factor 1	AK077542|Arf1|11840|ADP-ribosylation factor 1	AK150699|Arf1|11840|ADP-ribosylation factor 1	AK151223|Arf1|11840|ADP-ribosylation factor 1	AK159174|Arf1|11840|ADP-ribosylation factor 1	AK166628|Arf1|11840|ADP-ribosylation factor 1	AK168686|Arf1|11840|ADP-ribosylation factor 1	AK148873|Arf1|11840|ADP-ribosylation factor 1	AK167931|Arf1|11840|ADP-ribosylation factor 1	AK148458|Arf1|11840|ADP-ribosylation factor 1	AK167129|Arf1|11840|ADP-ribosylation factor 1	AK153132|Arf1|11840|ADP-ribosylation factor 1	AK150092|Arf1|11840|ADP-ribosylation factor 1	AK151225|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr10_-_116813919_116814033	0.12029	AUUGCAC	AK048615|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK046856|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK168764|Cpsf6|432508|cleavage and polyadenylation specific factor 6	BC068133|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK049749|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK077684|Cpsf6|432508|cleavage and polyadenylation specific factor 6	NM_001013391|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chrX_+_38754480_38754557	0.120214	AUUGCAC	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr9_-_62994774_62994817	0.12003	AUUGCAC	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr2_+_84518544_84518790	0.119875	AUUGCAC	NM_025885|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK010552|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK005399|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK168787|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK160579|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC082559|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC055404|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044207|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044302|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK209282|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)
mm9_v1_chr5_+_144309573_144309659	0.118193	AUUGCAC	NM_026050|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	NM_133703|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK075875|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK076127|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC012231|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK156614|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	BC100440|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK165304|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK014805|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene	AK005298|2810453I06Rik|67238|RIKEN cDNA 2810453I06 gene
mm9_v1_chr16_+_20589654_20589675	0.115667	AUUGCAC	AK141799|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_001144953|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_182636|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr1_+_140864297_140864301	0.114451	AUUGCAC	AK155727|Dennd1b|329260|DENN/MADD domain containing 1B	NM_181347|Dennd1b|329260|DENN/MADD domain containing 1B	BC141388|Dennd1b|329260|DENN/MADD domain containing 1B	BC141389|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr11_+_120094240_120094260	0.104643	AUUGCAC	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr6_+_15135505_15135508	0.104396	AUUGCAC	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr17_-_79135885_79135936	0.100161	AUUGCAC	BC090968|Strn|268980|striatin, calmodulin binding protein	NM_011500|Strn|268980|striatin, calmodulin binding protein	AK051549|Strn|268980|striatin, calmodulin binding protein
mm9_v1_chr5_+_130845319_130845359	0.0994725	AUUGCAC	NM_181045|Caln1|140904|calneuron 1	AF282251|Caln1|140904|calneuron 1	AK035865|Caln1|140904|calneuron 1
mm9_v1_chr5_-_122952228_122952237	0.0963661	AUUGCAC	NM_001110140|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	NM_009722|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr8_-_47209499_47209499	0.0928424	AUUGCAC	NM_207213|Snx25|102141|sorting nexin 25
mm9_v1_chr9_+_74823917_74823980	0.0900354	AUUGCAC	BC031353|BC031353|235493|cDNA sequence BC031353	NM_153584|BC031353|235493|cDNA sequence BC031353
mm9_v1_chr9_-_24956272_24956327	0.0892167	AUUGCAC	AK135935|Herpud2|80517|HERPUD family member 2	NM_020586|Herpud2|80517|HERPUD family member 2	BC043693|Herpud2|80517|HERPUD family member 2
mm9_v1_chr11_-_86171026_86171057	0.086483	AUUGCAC	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chrX_+_109714134_109714134	0.084077	AUUGCAC	AK038956|Zfp711|245595|zinc finger protein 711	NM_177747|Zfp711|245595|zinc finger protein 711
mm9_v1_chr9_-_85637765_85637765	0.0837098	AUUGCAC	NM_001081282|Ibtk|108837|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm9_v1_chr7_+_119902897_119902956	0.0815305	AUUGCAC	NM_001166585|Tead1|21676|TEA domain family member 1	L06865|Tead1|21676|TEA domain family member 1	BC052021|Tead1|21676|TEA domain family member 1	BC060138|Tead1|21676|TEA domain family member 1
mm9_v1_chrX_-_91787372_91787452	0.0810634	AUUGCAC	AB029448|Maged1|94275|melanoma antigen, family D, 1	NM_019791|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr11_+_94072732_94072796	0.0733771	AUUGCAC	AK142667|Tob1|22057|transducer of ErbB-2.1	BC082588|Tob1|22057|transducer of ErbB-2.1	NM_009427|Tob1|22057|transducer of ErbB-2.1
mm9_v1_chr13_-_104710374_104710739	0.0719503	AUUGCAC	BC141178|Erbb2ip|59079|Erbb2 interacting protein	BC141188|Erbb2ip|59079|Erbb2 interacting protein	BC145498|Erbb2ip|59079|Erbb2 interacting protein	BC145509|Erbb2ip|59079|Erbb2 interacting protein	AK169529|Erbb2ip|59079|Erbb2 interacting protein	NM_001005868|Erbb2ip|59079|Erbb2 interacting protein	NM_021563|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr2_-_131855722_131855755	0.0665296	AUUGCAC	NM_175445|Rassf2|215653|Ras association (RalGDS/AF-6) domain family member 2
mm9_v1_chr4_+_5571316_5571381	0.0615036	AUUGCAC	AK159054|Fam110b|242297|family with sequence similarity 110, member B	AK163184|Fam110b|242297|family with sequence similarity 110, member B	AK052596|Fam110b|242297|family with sequence similarity 110, member B	NM_173426|Fam110b|242297|family with sequence similarity 110, member B	AK005911|Fam110b|242297|family with sequence similarity 110, member B
mm9_v1_chr15_-_81688686_81688755	0.0574698	AUUGCAC	BC094031|Tob2|57259|transducer of ERBB2, 2	BC021869|Tob2|57259|transducer of ERBB2, 2	AK049766|Tob2|57259|transducer of ERBB2, 2	AK080817|Tob2|57259|transducer of ERBB2, 2	AK143542|Tob2|57259|transducer of ERBB2, 2	AK037631|Tob2|57259|transducer of ERBB2, 2	AK044623|Tob2|57259|transducer of ERBB2, 2	NM_020507|Tob2|57259|transducer of ERBB2, 2
mm9_v1_chr10_+_98725858_98725868	0.0549775	AUUGCAC	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr9_+_74918979_74919024	0.0532089	AUUGCAC	AK032713|Myo5a|17918|myosin VA	NM_010864|Myo5a|17918|myosin VA
mm9_v1_chr7_-_81699435_81699678	0.0521972	AUUGCAC	AK166266|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	BC094464|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK037938|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	BC025059|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK152488|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AF226324|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK151781|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	AK031280|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	NM_001038643|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1	NM_023908|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1
mm9_v1_chr3_+_32335072_32335127	0.048061	AUUGCAC	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr1_-_25886551_25886551	0.0460411	AUUGCAC	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr10_+_7400978_7401034	0.0453461	AUUGCAC	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chrX_+_20265590_20265887	0.0440439	AUUGCAC	AK143518|Cdk16|18555|cyclin-dependent kinase 16	AK051425|Cdk16|18555|cyclin-dependent kinase 16	NM_011049|Cdk16|18555|cyclin-dependent kinase 16	AK211169|Cdk16|18555|cyclin-dependent kinase 16	BC011069|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr5_-_102498929_102498975	0.0380927	AUUGCAC	AK047077|Wdfy3|72145|WD repeat and FYVE domain containing 3	AY336569|Wdfy3|72145|WD repeat and FYVE domain containing 3	NM_172882|Wdfy3|72145|WD repeat and FYVE domain containing 3
mm9_v1_chr9_-_99040505_99040647	0.0378241	AUUGCAC	AK090116|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	BC039650|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	AK154106|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	NM_029094|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm9_v1_chr3_-_132613190_132613254	0.0347777	AUUGCAC	AB059656|Npnt|114249|nephronectin	NM_001029836|Npnt|114249|nephronectin	NM_033525|Npnt|114249|nephronectin
mm9_v1_chr14_+_31292750_31292775	0.0320109	AUUGCAC	AJ344447|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	NM_133761|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr6_-_119058206_119058206	0.0306387	AUUGCAC	BC138031|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	BC145103|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	BC145104|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	BC145105|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_001159533|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_001159534|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_001159535|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm9_v1_chr13_+_120217406_120217406	0.0288633	AUUGCAC	AK040012|Paip1|218693|polyadenylate binding protein-interacting protein 1	NM_001079849|Paip1|218693|polyadenylate binding protein-interacting protein 1
mm9_v1_chr13_-_99585403_99585403	0.0242783	AUUGCAC	AK031041|Fcho2|218503|FCH domain only 2	NM_172591|Fcho2|218503|FCH domain only 2
mm9_v1_chr10_-_80889856_80889928	0.0222572	AUUGCAC	U57635|Nfic|18029|nuclear factor I/C	Y07692|Nfic|18029|nuclear factor I/C	AK087539|Nfic|18029|nuclear factor I/C	AK147496|Nfic|18029|nuclear factor I/C	AK155258|Nfic|18029|nuclear factor I/C	NM_008688|Nfic|18029|nuclear factor I/C	NM_026756|Nfic|18029|nuclear factor I/C
mm9_v1_chr9_+_77956998_77957048	0.0210806	AUUGCAC	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr7_+_130114059_130114440	0.017262	AUUGCAC	NM_011247|Rbbp6|19647|retinoblastoma binding protein 6	NM_175023|Rbbp6|19647|retinoblastoma binding protein 6	AK081261|Rbbp6|19647|retinoblastoma binding protein 6	AK045635|Rbbp6|19647|retinoblastoma binding protein 6	BC025874|Rbbp6|19647|retinoblastoma binding protein 6
mm9_v1_chr2_+_75670230_75670233	0.0168481	AUUGCAC	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr15_+_80541675_80541764	0.0135168	AUUGCAC	AK048628|Tnrc6b|213988|trinucleotide repeat containing 6b	NM_144812|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr5_-_23122181_23122418	0.013291	AUUGCAC	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr7_+_137836057_137836069	0.0122207	AUUGCAC	AB041546|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_021314|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr7_-_88599560_88599643	0.0108745	AUUGCAC	BC125476|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	BC144948|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	NM_007755|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	Y08260|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	AK136088|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1
mm9_v1_chr3_-_97020401_97020429	0.0106639	AUUGCAC	BC137850|Bcl9|77578|B-cell CLL/lymphoma 9	AY296061|Bcl9|77578|B-cell CLL/lymphoma 9	NM_029933|Bcl9|77578|B-cell CLL/lymphoma 9
mm9_v1_chr10_-_119913990_119913990	0.00920021	AUUGCAC	NM_010441|Hmga2|15364|high mobility group AT-hook 2
mm9_v1_chr15_+_91958558_91958558	0.00671061	AUUGCAC	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr9_+_96096690_96096766	0.00463293	AUUGCAC	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr4_+_13711928_13711928	0.00439837	AUUGCAC	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr11_+_100181296_100181331	0.000992669	AUUGCAC	AK150813|Eif1|20918|eukaryotic translation initiation factor 1	AK151575|Eif1|20918|eukaryotic translation initiation factor 1	AK152194|Eif1|20918|eukaryotic translation initiation factor 1	AK169763|Eif1|20918|eukaryotic translation initiation factor 1	AK148032|Eif1|20918|eukaryotic translation initiation factor 1	AK151070|Eif1|20918|eukaryotic translation initiation factor 1	BC003463|Eif1|20918|eukaryotic translation initiation factor 1	NM_011508|Eif1|20918|eukaryotic translation initiation factor 1	BC081429|Eif1|20918|eukaryotic translation initiation factor 1	AF129888|Eif1|20918|eukaryotic translation initiation factor 1	BC010791|Eif1|20918|eukaryotic translation initiation factor 1	BC096691|Eif1|20918|eukaryotic translation initiation factor 1	BC096656|Eif1|20918|eukaryotic translation initiation factor 1
mm9_v1_chr16_+_93832365_93832557	0.000786501	AUUGCAC	AK172896|Morc3|338467|microrchidia 3	NM_001045529|Morc3|338467|microrchidia 3	BC145705|Morc3|338467|microrchidia 3	AK144885|Morc3|338467|microrchidia 3	AK132226|Morc3|338467|microrchidia 3	BC098072|Morc3|338467|microrchidia 3
