mm9_v1_chr2_+_25036276_25036300	4.78644	CACAGUG	AY046077|Nrarp|67122|Notch-regulated ankyrin repeat protein	NM_025980|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC020293|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC048088|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr2_+_181498036_181498036	4.59655	CACAGUG	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chr1_-_135975681_135975731	3.36304	CACAGUG	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr16_+_33684551_33684609	3.151	CACAGUG	AK028518|Heg1|77446|HEG homolog 1 (zebrafish)	AK163128|Heg1|77446|HEG homolog 1 (zebrafish)	NM_175256|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr3_+_131748252_131748264	3.14306	CACAGUG	AK031749|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	NM_020265|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	BC096448|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)
mm9_v1_chr14_+_73637697_73637874	2.97117	CACAGUG	NM_175116|Lpar6|67168|lysophosphatidic acid receptor 6	AK032901|Lpar6|67168|lysophosphatidic acid receptor 6	AK011967|Lpar6|67168|lysophosphatidic acid receptor 6	AK169602|Lpar6|67168|lysophosphatidic acid receptor 6	BC047931|Lpar6|67168|lysophosphatidic acid receptor 6	AK008952|Lpar6|67168|lysophosphatidic acid receptor 6	BC057175|Lpar6|67168|lysophosphatidic acid receptor 6	BC069991|Lpar6|67168|lysophosphatidic acid receptor 6
mm9_v1_chr19_-_12576485_12576634	2.93834	CACAGUG	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr10_+_79642100_79642260	2.85826	CACAGUG	AK140544|Efna2|13637|ephrin A2	NM_007909|Efna2|13637|ephrin A2
mm9_v1_chr1_-_153937364_153937449	2.85623	CACAGUG	AK144357|LOC545371|545371|hypothetical protein LOC545371	NM_197990|1700025G04Rik|69399|RIKEN cDNA 1700025G04 gene
mm9_v1_chr13_-_117099629_117099895	2.65655	CACAGUG	AB104633|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AJ132765|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	BC132609|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK044406|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK090263|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	AK143052|Isl1|16392|ISL1 transcription factor, LIM/homeodomain	NM_021459|Isl1|16392|ISL1 transcription factor, LIM/homeodomain
mm9_v1_chr4_+_47366162_47366183	2.65238	CACAGUG	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr2_-_153067043_153067211	2.62581	CACAGUG	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr4_-_131604821_131605088	2.53831	CACAGUG	BC079875|Epb4.1|269587|erythrocyte protein band 4.1	AK220462|Epb4.1|269587|erythrocyte protein band 4.1	NM_001128606|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr18_+_44540137_44540241	2.44442	CACAGUG	AK153105|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	NM_027490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK008609|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK017809|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK166560|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK010490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK152160|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153264|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153310|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)
mm9_v1_chr1_+_168184269_168184413	2.38539	CACAGUG	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr3_+_5218545_5218658	2.38507	CACAGUG	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr10_+_110357230_110357257	2.3508	CACAGUG	AF037208|Csrp2|13008|cysteine and glycine-rich protein 2	AK010626|Csrp2|13008|cysteine and glycine-rich protein 2	NM_007792|Csrp2|13008|cysteine and glycine-rich protein 2	AK003328|Csrp2|13008|cysteine and glycine-rich protein 2	AK012647|Csrp2|13008|cysteine and glycine-rich protein 2	BC012663|Csrp2|13008|cysteine and glycine-rich protein 2
mm9_v1_chr19_-_34329804_34329828	2.26923	CACAGUG	X13297|Acta2|11475|actin, alpha 2, smooth muscle, aorta	BC064800|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK017374|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK156331|Acta2|11475|actin, alpha 2, smooth muscle, aorta	NM_007392|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr13_+_89680240_89680277	2.15376	CACAGUG	AK032750|Hapln1|12950|hyaluronan and proteoglycan link protein 1	NM_013500|Hapln1|12950|hyaluronan and proteoglycan link protein 1
mm9_v1_chr15_+_102236709_102236810	2.09398	CACAGUG	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr2_-_136942066_136942255	2.05437	CACAGUG	NM_013822|Jag1|16449|jagged 1	AK137092|Jag1|16449|jagged 1	AF171092|Jag1|16449|jagged 1
mm9_v1_chr5_-_103640272_103640352	2.05211	CACAGUG	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr3_-_86978431_86978668	1.95888	CACAGUG	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr12_+_110691637_110691748	1.91153	CACAGUG	AK162458|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190703|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190704|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_001190705|Dlk1|13386|delta-like 1 homolog (Drosophila)	NM_010052|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK005522|Dlk1|13386|delta-like 1 homolog (Drosophila)	AK164935|Dlk1|13386|delta-like 1 homolog (Drosophila)	L12721|Dlk1|13386|delta-like 1 homolog (Drosophila)	BC052159|Dlk1|13386|delta-like 1 homolog (Drosophila)	U15980|Dlk1|13386|delta-like 1 homolog (Drosophila)	EU434917|Dlk1|13386|delta-like 1 homolog (Drosophila)
mm9_v1_chr17_-_47970167_47970209	1.81622	CACAGUG	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr13_-_34437042_34437162	1.81561	CACAGUG	AK147397|Slc22a23|73102|solute carrier family 22, member 23	NM_001033167|Slc22a23|73102|solute carrier family 22, member 23
mm9_v1_chr6_-_39156706_39156787	1.77319	CACAGUG	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr6_+_88148657_88148753	1.76771	CACAGUG	AK154981|Gata2|14461|GATA binding protein 2	NM_008090|Gata2|14461|GATA binding protein 2	AK004551|Gata2|14461|GATA binding protein 2	AK154792|Gata2|14461|GATA binding protein 2	BC107009|Gata2|14461|GATA binding protein 2
mm9_v1_chr10_+_110182506_110182701	1.75088	CACAGUG	AK051521|E2f7|52679|E2F transcription factor 7	NM_178609|E2f7|52679|E2F transcription factor 7	AK031078|E2f7|52679|E2F transcription factor 7	AK041481|E2f7|52679|E2F transcription factor 7	AY463359|E2f7|52679|E2F transcription factor 7	AK143686|E2f7|52679|E2F transcription factor 7	BC145429|E2f7|52679|E2F transcription factor 7	BC150772|E2f7|52679|E2F transcription factor 7	AK045040|E2f7|52679|E2F transcription factor 7
mm9_v1_chr2_+_18598644_18598801	1.74441	CACAGUG	M64279|Bmi1|12151|Bmi1 polycomb ring finger oncogene	NM_007552|Bmi1|12151|Bmi1 polycomb ring finger oncogene
mm9_v1_chr8_-_28285056_28285121	1.73939	CACAGUG	AK014696|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK089792|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC125400|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	BC132094|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK166735|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK086797|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK151024|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	AK030769|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_001080813|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)	NM_029423|Rab11fip1|75767|RAB11 family interacting protein 1 (class I)
mm9_v1_chr18_-_89063572_89063675	1.71307	CACAGUG	BC094443|Socs6|54607|suppressor of cytokine signaling 6	AK028701|Socs6|54607|suppressor of cytokine signaling 6	AK083341|Socs6|54607|suppressor of cytokine signaling 6	AK028665|Socs6|54607|suppressor of cytokine signaling 6	AK031164|Socs6|54607|suppressor of cytokine signaling 6	AK044946|Socs6|54607|suppressor of cytokine signaling 6	NM_018821|Socs6|54607|suppressor of cytokine signaling 6	BC085245|Socs6|54607|suppressor of cytokine signaling 6	AK031929|Socs6|54607|suppressor of cytokine signaling 6	AK019993|Socs6|54607|suppressor of cytokine signaling 6
mm9_v1_chr2_-_168592528_168592700	1.68646	CACAGUG	AY463371|Sall4|99377|sal-like 4 (Drosophila)	AY463372|Sall4|99377|sal-like 4 (Drosophila)	AY463373|Sall4|99377|sal-like 4 (Drosophila)	AK049188|Sall4|99377|sal-like 4 (Drosophila)	AK145388|Sall4|99377|sal-like 4 (Drosophila)	BC099928|Sall4|99377|sal-like 4 (Drosophila)	BC053716|Sall4|99377|sal-like 4 (Drosophila)	NM_175303|Sall4|99377|sal-like 4 (Drosophila)	NM_201395|Sall4|99377|sal-like 4 (Drosophila)	NM_201396|Sall4|99377|sal-like 4 (Drosophila)
mm9_v1_chr3_+_63780058_63780135	1.66456	CACAGUG	AK143197|Gmps|229363|guanine monophosphate synthetase	NM_001033300|Gmps|229363|guanine monophosphate synthetase	AK169701|Gmps|229363|guanine monophosphate synthetase	AK169043|Gmps|229363|guanine monophosphate synthetase	AK167857|Gmps|229363|guanine monophosphate synthetase	AK049755|Gmps|229363|guanine monophosphate synthetase	BC138411|Gmps|229363|guanine monophosphate synthetase	BC138412|Gmps|229363|guanine monophosphate synthetase	AK168239|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chr5_+_28492235_28492251	1.66138	CACAGUG	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr10_+_127176590_127176697	1.62526	CACAGUG	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr19_+_40905768_40905801	1.6211	CACAGUG	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr14_-_65881225_65881304	1.61171	CACAGUG	BC066186|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC103714|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK134261|Fzd3|14365|frizzled homolog 3 (Drosophila)	AK160554|Fzd3|14365|frizzled homolog 3 (Drosophila)	BC050965|Fzd3|14365|frizzled homolog 3 (Drosophila)	NM_021458|Fzd3|14365|frizzled homolog 3 (Drosophila)
mm9_v1_chr8_-_72519966_72520302	1.60307	CACAGUG	AK160058|Gatad2a|234366|GATA zinc finger domain containing 2A	AK089074|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_001113345|Gatad2a|234366|GATA zinc finger domain containing 2A	NM_145596|Gatad2a|234366|GATA zinc finger domain containing 2A	AK083473|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr1_+_64579358_64579513	1.57173	CACAGUG	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr4_-_131631226_131631229	1.56706	CACAGUG	NM_001128607|Epb4.1|269587|erythrocyte protein band 4.1
mm9_v1_chr12_-_28027541_28027588	1.56175	CACAGUG	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr5_-_111239017_111239099	1.56146	CACAGUG	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr8_-_73905790_73905902	1.55829	CACAGUG	AK131941|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6	NM_010150|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6
mm9_v1_chr16_+_44139908_44140168	1.55818	CACAGUG	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chr16_+_44173356_44173509	1.53905	CACAGUG	NM_001029889|Gm608|207806|predicted gene 608
mm9_v1_chr13_-_99660903_99660996	1.52524	CACAGUG	BC055372|Tnpo1|238799|transportin 1	AK167049|Tnpo1|238799|transportin 1	AK045132|Tnpo1|238799|transportin 1	NM_001048267|Tnpo1|238799|transportin 1
mm9_v1_chr15_-_60656465_60656634	1.52135	CACAGUG	AK139928|Fam84b|399603|family with sequence similarity 84, member B	NM_001162926|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr5_+_73882264_73882364	1.5196	CACAGUG	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr10_-_20444654_20444883	1.50691	CACAGUG	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr2_+_32390780_32390878	1.49769	CACAGUG	AK131145|Fam102a|98952|family with sequence similarity 102, member A	AK170536|Fam102a|98952|family with sequence similarity 102, member A	AK049032|Fam102a|98952|family with sequence similarity 102, member A	NM_153560|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr2_-_140497204_140497211	1.48089	CACAGUG	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr1_+_59538966_59539075	1.46318	CACAGUG	NM_008057|Fzd7|14369|frizzled homolog 7 (Drosophila)	BC063077|Fzd7|14369|frizzled homolog 7 (Drosophila)
mm9_v1_chr4_-_122638401_122638432	1.42945	CACAGUG	BC060526|Mfsd2a|76574|major facilitator superfamily domain containing 2A	BC046793|Mfsd2a|76574|major facilitator superfamily domain containing 2A	AK006096|Mfsd2a|76574|major facilitator superfamily domain containing 2A	NM_029662|Mfsd2a|76574|major facilitator superfamily domain containing 2A
mm9_v1_chr2_+_27532692_27532866	1.40434	CACAGUG	AK144675|Rxra|20181|retinoid X receptor alpha	NM_011305|Rxra|20181|retinoid X receptor alpha	M84817|Rxra|20181|retinoid X receptor alpha	BC138800|Rxra|20181|retinoid X receptor alpha	BC138802|Rxra|20181|retinoid X receptor alpha	X66223|Rxra|20181|retinoid X receptor alpha	AK031034|Rxra|20181|retinoid X receptor alpha
mm9_v1_chr15_+_96117952_96118007	1.37954	CACAGUG	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr11_-_76660476_76660569	1.37395	CACAGUG	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr11_+_98769162_98769202	1.35301	CACAGUG	AK162669|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK075975|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK085020|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	AK012192|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	BC052434|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)	NM_001025779|Cdc6|23834|cell division cycle 6 homolog (S. cerevisiae)
mm9_v1_chr9_+_72510153_72510370	1.35261	CACAGUG	D85414|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	NM_010890|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088767|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK133838|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK144240|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK169582|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK088620|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC138813|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK050517|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK080349|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK160570|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	AK122203|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4	BC080710|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr7_+_121558695_121558794	1.34362	CACAGUG	NM_011055|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited	AF547435|Pde3b|18576|phosphodiesterase 3B, cGMP-inhibited
mm9_v1_chr1_+_140860285_140860402	1.3286	CACAGUG	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr16_-_35490849_35490973	1.32795	CACAGUG	BC009151|Pdia5|72599|protein disulfide isomerase associated 5	NM_028295|Pdia5|72599|protein disulfide isomerase associated 5
mm9_v1_chr15_-_103197178_103197295	1.32555	CACAGUG	BC053431|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	NM_010577|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC050943|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC059829|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)
mm9_v1_chr9_+_44187572_44187715	1.30046	CACAGUG	NM_021395|Hyou1|12282|hypoxia up-regulated 1	AK128937|Hyou1|12282|hypoxia up-regulated 1	AK155721|Hyou1|12282|hypoxia up-regulated 1	AK145857|Hyou1|12282|hypoxia up-regulated 1	AK171769|Hyou1|12282|hypoxia up-regulated 1	BC058255|Hyou1|12282|hypoxia up-regulated 1	AK157949|Hyou1|12282|hypoxia up-regulated 1	BC019785|Hyou1|12282|hypoxia up-regulated 1	BC050107|Hyou1|12282|hypoxia up-regulated 1
mm9_v1_chr4_-_154010868_154010981	1.28389	CACAGUG	AB078338|Prdm16|70673|PR domain containing 16	AK083829|Prdm16|70673|PR domain containing 16	BC053082|Prdm16|70673|PR domain containing 16	BC059838|Prdm16|70673|PR domain containing 16	NM_001177995|Prdm16|70673|PR domain containing 16	NM_027504|Prdm16|70673|PR domain containing 16
mm9_v1_chr4_-_44180323_44180519	1.24833	CACAGUG	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr15_-_73015345_73015397	1.22283	CACAGUG	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr10_+_43198945_43198945	1.20896	CACAGUG	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr11_+_98821784_98821900	1.20195	CACAGUG	AK170956|Rara|19401|retinoic acid receptor, alpha	NM_001176528|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr13_-_99696254_99696340	1.18998	CACAGUG	AK030580|Tnpo1|238799|transportin 1	AK087194|Tnpo1|238799|transportin 1	AK037001|Tnpo1|238799|transportin 1	AK029953|Tnpo1|238799|transportin 1	NM_178716|Tnpo1|238799|transportin 1
mm9_v1_chr18_-_72510670_72510722	1.18558	CACAGUG	AK157715|Dcc|13176|deleted in colorectal carcinoma	AK090377|Dcc|13176|deleted in colorectal carcinoma	NM_007831|Dcc|13176|deleted in colorectal carcinoma
mm9_v1_chr5_-_114358647_114358779	1.15271	CACAGUG	BC099671|Coro1c|23790|coronin, actin binding protein 1C	AK037801|Coro1c|23790|coronin, actin binding protein 1C	BC085498|Coro1c|23790|coronin, actin binding protein 1C	AF143957|Coro1c|23790|coronin, actin binding protein 1C	BC019444|Coro1c|23790|coronin, actin binding protein 1C	BC087553|Coro1c|23790|coronin, actin binding protein 1C	AK169262|Coro1c|23790|coronin, actin binding protein 1C	AK151017|Coro1c|23790|coronin, actin binding protein 1C	AK151749|Coro1c|23790|coronin, actin binding protein 1C	AK167089|Coro1c|23790|coronin, actin binding protein 1C	AK159506|Coro1c|23790|coronin, actin binding protein 1C	AK169404|Coro1c|23790|coronin, actin binding protein 1C	BC009126|Coro1c|23790|coronin, actin binding protein 1C	AK082986|Coro1c|23790|coronin, actin binding protein 1C	NM_011779|Coro1c|23790|coronin, actin binding protein 1C	AK088101|Coro1c|23790|coronin, actin binding protein 1C	AK077552|Coro1c|23790|coronin, actin binding protein 1C	AK079327|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr6_-_119988624_119988681	1.1476	CACAGUG	AK172935|Wnk1|232341|WNK lysine deficient protein kinase 1	BC055788|Wnk1|232341|WNK lysine deficient protein kinase 1	BC046916|Wnk1|232341|WNK lysine deficient protein kinase 1	AK133738|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185020|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_001185021|Wnk1|232341|WNK lysine deficient protein kinase 1	NM_198703|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr11_-_86807216_86807263	1.14684	CACAGUG	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr4_-_33010429_33010479	1.13399	CACAGUG	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr5_-_108304062_108304125	1.12854	CACAGUG	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr11_+_62062462_62062711	1.12616	CACAGUG	AK047002|Adora2b|11541|adenosine A2b receptor	NM_007413|Adora2b|11541|adenosine A2b receptor	AK080759|Adora2b|11541|adenosine A2b receptor	BC116415|Adora2b|11541|adenosine A2b receptor	BC116416|Adora2b|11541|adenosine A2b receptor	U05673|Adora2b|11541|adenosine A2b receptor	AK077289|Adora2b|11541|adenosine A2b receptor
mm9_v1_chr3_+_129235284_129235325	1.11446	CACAGUG	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr10_-_117283020_117283117	1.10471	CACAGUG	BC052480|Rap1b|215449|RAS related protein 1b	NM_024457|Rap1b|215449|RAS related protein 1b	AK163242|Rap1b|215449|RAS related protein 1b
mm9_v1_chr15_-_103045710_103045798	1.10313	CACAGUG	X99641|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK018349|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030442|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK032975|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	AK030366|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001110216|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_007626|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr4_+_125781197_125781263	1.10258	CACAGUG	NM_001145827|Stk40|74178|serine/threonine kinase 40	NM_028800|Stk40|74178|serine/threonine kinase 40	AK154780|Stk40|74178|serine/threonine kinase 40	AY336057|Stk40|74178|serine/threonine kinase 40	BC046981|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr10_-_8605668_8605870	1.08733	CACAGUG	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr5_-_135870365_135870452	1.07805	CACAGUG	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr10_-_83996632_83996824	1.06715	CACAGUG	NM_175451|Ckap4|216197|cytoskeleton-associated protein 4	BC138318|Ckap4|216197|cytoskeleton-associated protein 4	BC138320|Ckap4|216197|cytoskeleton-associated protein 4	AK132136|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr4_+_15192892_15192977	1.05422	CACAGUG	AK156282|Tmem64|100201|transmembrane protein 64	NM_181401|Tmem64|100201|transmembrane protein 64	AY147882|Tmem64|100201|transmembrane protein 64	BC030341|Tmem64|100201|transmembrane protein 64
mm9_v1_chr8_+_107064705_107064811	1.05066	CACAGUG	AK090390|Car7|12354|carbonic anhydrase 7	AY075021|Car7|12354|carbonic anhydrase 7	NM_053070|Car7|12354|carbonic anhydrase 7	BC094913|Car7|12354|carbonic anhydrase 7	AF291660|Car7|12354|carbonic anhydrase 7
mm9_v1_chr11_-_82684653_82684724	1.04996	CACAGUG	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr18_-_34166859_34166859	1.04539	CACAGUG	NM_013512|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr4_-_140695648_140695720	1.02266	CACAGUG	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr9_+_21528037_21528221	1.01242	CACAGUG	NM_010700|Ldlr|16835|low density lipoprotein receptor	AK076243|Ldlr|16835|low density lipoprotein receptor	AK151968|Ldlr|16835|low density lipoprotein receptor	BC053041|Ldlr|16835|low density lipoprotein receptor	AK170264|Ldlr|16835|low density lipoprotein receptor	AK149950|Ldlr|16835|low density lipoprotein receptor	AK160006|Ldlr|16835|low density lipoprotein receptor	AK161104|Ldlr|16835|low density lipoprotein receptor	AK166466|Ldlr|16835|low density lipoprotein receptor	AK018697|Ldlr|16835|low density lipoprotein receptor	AK152103|Ldlr|16835|low density lipoprotein receptor	X64414|Ldlr|16835|low density lipoprotein receptor	BC019207|Ldlr|16835|low density lipoprotein receptor	AK184620|Ldlr|16835|low density lipoprotein receptor	AF425607|Ldlr|16835|low density lipoprotein receptor	Z19521|Ldlr|16835|low density lipoprotein receptor
mm9_v1_chr2_+_129626252_129626487	0.996886	CACAGUG	NM_001038635|Stk35|67333|serine/threonine kinase 35	NM_183262|Stk35|67333|serine/threonine kinase 35	BC138904|Stk35|67333|serine/threonine kinase 35	BC138905|Stk35|67333|serine/threonine kinase 35	AK165988|Stk35|67333|serine/threonine kinase 35	AK006778|Stk35|67333|serine/threonine kinase 35
mm9_v1_chr4_+_33397279_33397404	0.994869	CACAGUG	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr17_-_31992708_31992780	0.983394	CACAGUG	U11494|Sik1|17691|salt inducible kinase 1	AK141817|Sik1|17691|salt inducible kinase 1	NM_010831|Sik1|17691|salt inducible kinase 1	AK172427|Sik1|17691|salt inducible kinase 1
mm9_v1_chr1_+_134195202_134195202	0.979688	CACAGUG	AK080356|Klhdc8a|213417|kelch domain containing 8A	NM_144810|Klhdc8a|213417|kelch domain containing 8A
mm9_v1_chr3_+_51219882_51219968	0.97587	CACAGUG	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr5_+_122608248_122608342	0.975508	CACAGUG	AK147131|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	NM_013636|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	BC021646|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK152422|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK169336|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform
mm9_v1_chr7_-_54263783_54263783	0.962804	CACAGUG	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr4_+_48598013_48598089	0.960808	CACAGUG	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr11_+_98798970_98799011	0.960446	CACAGUG	X56572|Rara|19401|retinoic acid receptor, alpha	NM_009024|Rara|19401|retinoic acid receptor, alpha	BC010216|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr6_-_53770687_53770818	0.958095	CACAGUG	BC043099|Tril|66873|TLR4 interactor with leucine-rich repeats	BC059224|Tril|66873|TLR4 interactor with leucine-rich repeats	NM_025817|Tril|66873|TLR4 interactor with leucine-rich repeats
mm9_v1_chr1_+_95700522_95700570	0.932244	CACAGUG	AK028397|Ing5|66262|inhibitor of growth family, member 5	NM_025454|Ing5|66262|inhibitor of growth family, member 5	AK007536|Ing5|66262|inhibitor of growth family, member 5	BC064674|Ing5|66262|inhibitor of growth family, member 5	AK009312|Ing5|66262|inhibitor of growth family, member 5	AK028010|Ing5|66262|inhibitor of growth family, member 5	AK145695|Ing5|66262|inhibitor of growth family, member 5
mm9_v1_chr12_-_47919695_47919761	0.930865	CACAGUG	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr18_-_33623668_33623692	0.929034	CACAGUG	NM_001109988|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr15_-_96291163_96291288	0.917836	CACAGUG	AK129478|Scaf11|72193|SR-related CTD-associated factor 11	AK034674|Scaf11|72193|SR-related CTD-associated factor 11	BC058682|Scaf11|72193|SR-related CTD-associated factor 11	NM_028148|Scaf11|72193|SR-related CTD-associated factor 11
mm9_v1_chr7_-_91032695_91032850	0.914422	CACAGUG	AK162446|Mesdc1|80889|mesoderm development candidate 1	AK084510|Mesdc1|80889|mesoderm development candidate 1	AK089082|Mesdc1|80889|mesoderm development candidate 1	AK036338|Mesdc1|80889|mesoderm development candidate 1	NM_030705|Mesdc1|80889|mesoderm development candidate 1
mm9_v1_chr2_-_167457476_167457545	0.912922	CACAGUG	AK012021|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	BC003449|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	AK158230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1	NM_023230|Ube2v1|66589|ubiquitin-conjugating enzyme E2 variant 1
mm9_v1_chrX_-_159267249_159267385	0.89971	CACAGUG	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr18_+_69505374_69505487	0.896157	CACAGUG	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr17_+_28828286_28828455	0.883873	CACAGUG	BC012235|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168508|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168514|Mapk14|26416|mitogen-activated protein kinase 14	NM_011951|Mapk14|26416|mitogen-activated protein kinase 14	BC085303|Mapk14|26416|mitogen-activated protein kinase 14	AK089059|Mapk14|26416|mitogen-activated protein kinase 14	AK133684|Mapk14|26416|mitogen-activated protein kinase 14	AF128892|Mapk14|26416|mitogen-activated protein kinase 14	BC018227|Mapk14|26416|mitogen-activated protein kinase 14	U10871|Mapk14|26416|mitogen-activated protein kinase 14	D83073|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr11_+_98799013_98799173	0.859224	CACAGUG	S56656|Rara|19401|retinoic acid receptor, alpha	BC040383|Rara|19401|retinoic acid receptor, alpha	NM_001177302|Rara|19401|retinoic acid receptor, alpha	AK154623|Rara|19401|retinoic acid receptor, alpha
mm9_v1_chr3_-_126701367_126701380	0.84326	CACAGUG	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr18_-_9450104_9450192	0.84315	CACAGUG	BC023321|Ccny|67974|cyclin Y	AK028696|Ccny|67974|cyclin Y	NM_026484|Ccny|67974|cyclin Y	AK014201|Ccny|67974|cyclin Y
mm9_v1_chr1_-_108693180_108693301	0.839929	CACAGUG	AK168270|Vps4b|20479|vacuolar protein sorting 4b (yeast)	BC003799|Vps4b|20479|vacuolar protein sorting 4b (yeast)	AK165594|Vps4b|20479|vacuolar protein sorting 4b (yeast)	U10119|Vps4b|20479|vacuolar protein sorting 4b (yeast)	AK151023|Vps4b|20479|vacuolar protein sorting 4b (yeast)	AK152131|Vps4b|20479|vacuolar protein sorting 4b (yeast)	NM_009190|Vps4b|20479|vacuolar protein sorting 4b (yeast)
mm9_v1_chr2_+_167906462_167906503	0.838719	CACAGUG	NM_021409|Pard6b|58220|par-6 (partitioning defective 6) homolog beta (C. elegans)
mm9_v1_chr9_-_43047862_43047949	0.828454	CACAGUG	BC026022|Oaf|102644|OAF homolog (Drosophila)	BC034836|Oaf|102644|OAF homolog (Drosophila)	AK150279|Oaf|102644|OAF homolog (Drosophila)	BC025514|Oaf|102644|OAF homolog (Drosophila)	AK051349|Oaf|102644|OAF homolog (Drosophila)	NM_178644|Oaf|102644|OAF homolog (Drosophila)
mm9_v1_chr1_-_51535232_51535262	0.811632	CACAGUG	AK167541|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK167652|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK028886|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK031015|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK042351|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK049396|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK051607|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077226|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077767|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK079434|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK083915|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK163613|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK166300|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AY880264|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	NM_028696|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK076824|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A
mm9_v1_chr7_+_140829357_140829384	0.804217	CACAGUG	NM_178115|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene	AK052387|2700050L05Rik|214764|RIKEN cDNA 2700050L05 gene
mm9_v1_chr11_+_98657082_98657130	0.804082	CACAGUG	BC058629|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	NM_028722|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC043039|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	AK053719|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC055715|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr13_-_59777105_59777155	0.801705	CACAGUG	BC011152|Golm1|105348|golgi membrane protein 1	AK167646|Golm1|105348|golgi membrane protein 1	AK160475|Golm1|105348|golgi membrane protein 1	BC098486|Golm1|105348|golgi membrane protein 1	NM_001035122|Golm1|105348|golgi membrane protein 1	NM_027307|Golm1|105348|golgi membrane protein 1	AK133865|Golm1|105348|golgi membrane protein 1
mm9_v1_chr11_+_11586215_11586246	0.800479	CACAGUG	NM_001025597|Ikzf1|22778|IKAROS family zinc finger 1	NM_009578|Ikzf1|22778|IKAROS family zinc finger 1	AK036833|Ikzf1|22778|IKAROS family zinc finger 1	AK040268|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chr6_+_17413930_17414106	0.785774	CACAGUG	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr4_+_43970559_43970608	0.785286	CACAGUG	BC031750|Glipr2|384009|GLI pathogenesis-related 2	NM_027450|Glipr2|384009|GLI pathogenesis-related 2	AK167595|Glipr2|384009|GLI pathogenesis-related 2	AK141459|Glipr2|384009|GLI pathogenesis-related 2	AK154433|Glipr2|384009|GLI pathogenesis-related 2	AK089960|Glipr2|384009|GLI pathogenesis-related 2	AK017557|Glipr2|384009|GLI pathogenesis-related 2
mm9_v1_chr10_+_12810593_12810650	0.780478	CACAGUG	BC065150|Plagl1|22634|pleiomorphic adenoma gene-like 1	NM_009538|Plagl1|22634|pleiomorphic adenoma gene-like 1	AK142210|Plagl1|22634|pleiomorphic adenoma gene-like 1	AK142052|Plagl1|22634|pleiomorphic adenoma gene-like 1
mm9_v1_chr11_-_97141747_97141925	0.778315	CACAGUG	BC009653|Npepps|19155|aminopeptidase puromycin sensitive	AK138772|Npepps|19155|aminopeptidase puromycin sensitive	U35646|Npepps|19155|aminopeptidase puromycin sensitive	BC086798|Npepps|19155|aminopeptidase puromycin sensitive	BC098212|Npepps|19155|aminopeptidase puromycin sensitive	NM_008942|Npepps|19155|aminopeptidase puromycin sensitive
mm9_v1_chr15_-_96886327_96886398	0.776821	CACAGUG	AK164292|Slc38a4|69354|solute carrier family 38, member 4	AK167539|Slc38a4|69354|solute carrier family 38, member 4	AK051023|Slc38a4|69354|solute carrier family 38, member 4	NM_027052|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr11_-_85048564_85048637	0.774547	CACAGUG	BC018442|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	BC019152|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK133853|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	NM_025825|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK004888|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm9_v1_chr16_+_20611637_20611755	0.757666	CACAGUG	AK007407|Ece2|107522|endothelin converting enzyme 2	AK007791|Ece2|107522|endothelin converting enzyme 2	BC115541|Ece2|107522|endothelin converting enzyme 2	BC115542|Ece2|107522|endothelin converting enzyme 2	NM_025462|Ece2|107522|endothelin converting enzyme 2	NM_177940|Ece2|107522|endothelin converting enzyme 2	NM_177941|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr5_+_97426665_97426877	0.753125	CACAGUG	AY050249|Bmp2k|140780|BMP2 inducible kinase	NM_080708|Bmp2k|140780|BMP2 inducible kinase	AK046752|Bmp2k|140780|BMP2 inducible kinase
mm9_v1_chr13_-_95992994_95993009	0.752718	CACAGUG	AK043680|Pde8b|218461|phosphodiesterase 8B	AK045991|Pde8b|218461|phosphodiesterase 8B	NM_001170669|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr16_+_27388907_27389196	0.743252	CACAGUG	BC144895|Ccdc50|67501|coiled-coil domain containing 50	BC144898|Ccdc50|67501|coiled-coil domain containing 50	BC145933|Ccdc50|67501|coiled-coil domain containing 50	BC145935|Ccdc50|67501|coiled-coil domain containing 50	NM_001025615|Ccdc50|67501|coiled-coil domain containing 50	NM_026202|Ccdc50|67501|coiled-coil domain containing 50	AK162434|Ccdc50|67501|coiled-coil domain containing 50	AK016827|Ccdc50|67501|coiled-coil domain containing 50	AK151672|Ccdc50|67501|coiled-coil domain containing 50	AK147820|Ccdc50|67501|coiled-coil domain containing 50	AK077557|Ccdc50|67501|coiled-coil domain containing 50	AK165214|Ccdc50|67501|coiled-coil domain containing 50	AK012190|Ccdc50|67501|coiled-coil domain containing 50	AJ534985|Ccdc50|67501|coiled-coil domain containing 50
mm9_v1_chr8_+_112392441_112392545	0.741917	CACAGUG	AK165088|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048472|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117961|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	NM_001122594|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117962|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048260|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2
mm9_v1_chr11_+_69814046_69814322	0.732322	CACAGUG	AK144001|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC092396|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC021015|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK146822|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	NM_007888|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	U24160|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	BC053050|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK168376|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK159895|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)	AK050614|Dvl2|13543|dishevelled 2, dsh homolog (Drosophila)
mm9_v1_chr12_+_80130149_80130201	0.728785	CACAGUG	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr8_-_72877137_72877227	0.723139	CACAGUG	AK148196|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	BC056442|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	NM_001122829|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	NM_030680|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)	AF182947|Upf1|19704|UPF1 regulator of nonsense transcripts homolog (yeast)
mm9_v1_chr11_+_20531941_20532003	0.717004	CACAGUG	AK146621|Sertad2|58172|SERTA domain containing 2	NM_001038625|Sertad2|58172|SERTA domain containing 2	AK146897|Sertad2|58172|SERTA domain containing 2	AK132846|Sertad2|58172|SERTA domain containing 2	AK142018|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr9_-_106691395_106691543	0.707004	CACAGUG	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr11_-_30854081_30854140	0.706584	CACAGUG	AK002471|Erlec1|66753|endoplasmic reticulum lectin 1	AK077120|Erlec1|66753|endoplasmic reticulum lectin 1	AK133874|Erlec1|66753|endoplasmic reticulum lectin 1	NM_025745|Erlec1|66753|endoplasmic reticulum lectin 1	BC018468|Erlec1|66753|endoplasmic reticulum lectin 1
mm9_v1_chr2_+_102498839_102498845	0.705132	CACAGUG	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr3_+_152058937_152059038	0.697132	CACAGUG	NM_001080755|Zzz3|108946|zinc finger, ZZ domain containing 3	AK131150|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chr15_-_38008565_38008625	0.696084	CACAGUG	NM_001081359|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5	NM_001112721|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chrX_+_70728939_70728991	0.681346	CACAGUG	BC057185|Bgn|12111|biglycan	AK135496|Bgn|12111|biglycan	AK155973|Bgn|12111|biglycan	AK164867|Bgn|12111|biglycan	L20276|Bgn|12111|biglycan	NM_007542|Bgn|12111|biglycan	AK171870|Bgn|12111|biglycan	AK086920|Bgn|12111|biglycan	BC019502|Bgn|12111|biglycan	BC005452|Bgn|12111|biglycan
mm9_v1_chr17_+_28938070_28938070	0.675999	CACAGUG	AK147555|Brpf3|268936|bromodomain and PHD finger containing, 3	NM_001081315|Brpf3|268936|bromodomain and PHD finger containing, 3
mm9_v1_chr2_-_115890747_115890848	0.671831	CACAGUG	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr17_+_64950988_64951003	0.667329	CACAGUG	NM_008549|Man2a1|17158|mannosidase 2, alpha 1	X61172|Man2a1|17158|mannosidase 2, alpha 1	BC138371|Man2a1|17158|mannosidase 2, alpha 1	BC138372|Man2a1|17158|mannosidase 2, alpha 1
mm9_v1_chr11_-_98010872_98010958	0.656099	CACAGUG	AK220232|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK161566|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK144786|Fbxl20|72194|F-box and leucine-rich repeat protein 20	NM_028149|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK012109|Fbxl20|72194|F-box and leucine-rich repeat protein 20
mm9_v1_chr10_-_70700764_70701027	0.647348	CACAGUG	U57939|Tfam|21780|transcription factor A, mitochondrial	AK004857|Tfam|21780|transcription factor A, mitochondrial	BC001987|Tfam|21780|transcription factor A, mitochondrial	BC083084|Tfam|21780|transcription factor A, mitochondrial	AK050446|Tfam|21780|transcription factor A, mitochondrial	AK167348|Tfam|21780|transcription factor A, mitochondrial	NM_009360|Tfam|21780|transcription factor A, mitochondrial	AK163563|Tfam|21780|transcription factor A, mitochondrial	AK017974|Tfam|21780|transcription factor A, mitochondrial	AK161747|Tfam|21780|transcription factor A, mitochondrial	AK167777|Tfam|21780|transcription factor A, mitochondrial	AK169808|Tfam|21780|transcription factor A, mitochondrial	U63859|Tfam|21780|transcription factor A, mitochondrial	U63858|Tfam|21780|transcription factor A, mitochondrial	U63712|Tfam|21780|transcription factor A, mitochondrial
mm9_v1_chr8_+_24521967_24522003	0.645679	CACAGUG	AK088868|Sfrp1|20377|secreted frizzled-related protein 1	NM_013834|Sfrp1|20377|secreted frizzled-related protein 1	BC094662|Sfrp1|20377|secreted frizzled-related protein 1	U88566|Sfrp1|20377|secreted frizzled-related protein 1	BC024495|Sfrp1|20377|secreted frizzled-related protein 1
mm9_v1_chr6_+_38383918_38383949	0.6449	CACAGUG	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr19_+_46697882_46697901	0.644799	CACAGUG	AK078491|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK142695|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	NM_001177813|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK052400|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed
mm9_v1_chr12_-_74147698_74147707	0.643602	CACAGUG	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr7_+_56214442_56214485	0.636979	CACAGUG	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr5_-_67819037_67819037	0.634325	CACAGUG	NM_001164806|Bend4|666938|BEN domain containing 4
mm9_v1_chr11_+_87861165_87861225	0.633159	CACAGUG	AK150535|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_001078167|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_173374|Srsf1|110809|serine/arginine-rich splicing factor 1	AK053674|Srsf1|110809|serine/arginine-rich splicing factor 1	AK018176|Srsf1|110809|serine/arginine-rich splicing factor 1	BC058627|Srsf1|110809|serine/arginine-rich splicing factor 1	AK078715|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169203|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169623|Srsf1|110809|serine/arginine-rich splicing factor 1	AK190745|Srsf1|110809|serine/arginine-rich splicing factor 1
mm9_v1_chr8_+_106625524_106625609	0.629037	CACAGUG	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chr5_-_115140869_115140951	0.621227	CACAGUG	AF209703|Gltp|56356|glycolipid transfer protein	BC053729|Gltp|56356|glycolipid transfer protein	AK157313|Gltp|56356|glycolipid transfer protein	BC016584|Gltp|56356|glycolipid transfer protein	NM_019821|Gltp|56356|glycolipid transfer protein
mm9_v1_chr2_+_146047656_146047846	0.612417	CACAGUG	BC051240|Insm1|53626|insulinoma-associated 1	NM_016889|Insm1|53626|insulinoma-associated 1	AF044669|Insm1|53626|insulinoma-associated 1	BC082809|Insm1|53626|insulinoma-associated 1
mm9_v1_chrX_+_90531783_90531984	0.610813	CACAGUG	AB006103|Arx|11878|aristaless related homeobox	BC052033|Arx|11878|aristaless related homeobox	NM_007492|Arx|11878|aristaless related homeobox
mm9_v1_chr4_-_91066674_91066674	0.588992	CACAGUG	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr14_-_46008425_46008617	0.588824	CACAGUG	BC092047|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	BC031116|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK018499|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK050266|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AJ001006|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	NM_019425|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007722|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK167870|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK168074|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007647|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK008566|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK002466|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK028693|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007764|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK011098|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1
mm9_v1_chr2_+_4480799_4480871	0.587521	CACAGUG	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr12_-_27100112_27100136	0.58729	CACAGUG	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr12_-_92828018_92828088	0.58037	CACAGUG	AF250834|Gtf2a1|83602|general transcription factor II A, 1	BC079909|Gtf2a1|83602|general transcription factor II A, 1	AK139996|Gtf2a1|83602|general transcription factor II A, 1	NM_031391|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr8_-_60131768_60131885	0.575598	CACAGUG	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr12_-_111934580_111934653	0.573965	CACAGUG	BC049124|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1	AK004658|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1	NM_010480|Hsp90aa1|15519|heat shock protein 90, alpha (cytosolic), class A member 1
mm9_v1_chr1_-_145624156_145624181	0.572936	CACAGUG	AK076167|Trove2|20822|TROVE domain family, member 2	NM_013835|Trove2|20822|TROVE domain family, member 2
mm9_v1_chr5_-_108561512_108561635	0.572238	CACAGUG	AK033463|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014065|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK140979|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK159813|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK170036|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC020076|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC132023|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC138226|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK151650|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK078317|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK042931|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014490|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	NM_028876|Tmed5|73130|transmembrane emp24 protein transport domain containing 5
mm9_v1_chr2_-_79969429_79969614	0.568651	CACAGUG	AK050004|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001159582|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK021279|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr18_-_33623400_33623430	0.56546	CACAGUG	NM_001109989|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr1_+_168309297_168309436	0.564199	CACAGUG	NM_030245|Tada1|27878|transcriptional adaptor 1	BC027337|Tada1|27878|transcriptional adaptor 1	AK151132|Tada1|27878|transcriptional adaptor 1
mm9_v1_chr12_+_71554087_71554153	0.5567	CACAGUG	AK030429|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK170468|Tmx1|72736|thioredoxin-related transmembrane protein 1	BC021533|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK150511|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK153027|Tmx1|72736|thioredoxin-related transmembrane protein 1	BC017603|Tmx1|72736|thioredoxin-related transmembrane protein 1	NM_028339|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK050567|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK013150|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK137059|Tmx1|72736|thioredoxin-related transmembrane protein 1
mm9_v1_chr1_-_82287990_82288082	0.55417	CACAGUG	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr8_-_72498210_72498309	0.55369	CACAGUG	NM_001113346|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr3_+_151873407_151873495	0.548702	CACAGUG	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr8_-_93837120_93837168	0.539976	CACAGUG	AK029911|Rpgrip1l|244585|Rpgrip1-like	NM_173431|Rpgrip1l|244585|Rpgrip1-like	AJ344253|Rpgrip1l|244585|Rpgrip1-like
mm9_v1_chr11_+_53164267_53164268	0.53768	CACAGUG	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr9_+_100544034_100544056	0.536463	CACAGUG	AK052003|Stag1|20842|stromal antigen 1	BC062954|Stag1|20842|stromal antigen 1	NM_009282|Stag1|20842|stromal antigen 1	AK017978|Stag1|20842|stromal antigen 1
mm9_v1_chr2_+_28496752_28496773	0.532457	CACAGUG	AK030318|Tsc1|64930|tuberous sclerosis 1	AJ271912|Tsc1|64930|tuberous sclerosis 1	AK147428|Tsc1|64930|tuberous sclerosis 1	NM_022887|Tsc1|64930|tuberous sclerosis 1	AK083363|Tsc1|64930|tuberous sclerosis 1	AK078140|Tsc1|64930|tuberous sclerosis 1	AK154416|Tsc1|64930|tuberous sclerosis 1
mm9_v1_chr5_+_151476361_151476427	0.527631	CACAGUG	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chrX_-_6765768_6765839	0.5245	CACAGUG	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr16_-_11254052_11254466	0.516186	CACAGUG	BC031640|Gspt1|14852|G1 to S phase transition 1	AK030760|Gspt1|14852|G1 to S phase transition 1	AK032059|Gspt1|14852|G1 to S phase transition 1	AK148603|Gspt1|14852|G1 to S phase transition 1	AK134128|Gspt1|14852|G1 to S phase transition 1	AK037929|Gspt1|14852|G1 to S phase transition 1	AK166626|Gspt1|14852|G1 to S phase transition 1	NM_001130008|Gspt1|14852|G1 to S phase transition 1	NM_146066|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr1_+_91351373_91351428	0.515132	CACAGUG	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr5_-_25004598_25004626	0.514225	CACAGUG	AK044828|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	NM_001081383|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3	AK087368|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr9_+_70526702_70526924	0.511726	CACAGUG	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr11_+_93747419_93747532	0.510582	CACAGUG	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr7_-_30290470_30290595	0.504267	CACAGUG	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chr15_+_99803210_99803320	0.502818	CACAGUG	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr12_-_60320438_60320474	0.497104	CACAGUG	BC020022|Fbxo33|70611|F-box protein 33	NM_001033156|Fbxo33|70611|F-box protein 33
mm9_v1_chr6_+_15135505_15135508	0.49054	CACAGUG	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr3_+_58810899_58810899	0.485429	CACAGUG	AK047743|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like	NM_177855|Med12l|329650|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)-like
mm9_v1_chr10_-_66747843_66748097	0.483354	CACAGUG	AK181810|Nrbf2|641340|nuclear receptor binding factor 2	AK189272|Nrbf2|641340|nuclear receptor binding factor 2	AK205591|Nrbf2|641340|nuclear receptor binding factor 2	AK004200|Nrbf2|641340|nuclear receptor binding factor 2	BC019448|Nrbf2|641340|nuclear receptor binding factor 2	NM_001036293|Nrbf2|641340|nuclear receptor binding factor 2	AK002810|Nrbf2|641340|nuclear receptor binding factor 2
mm9_v1_chr4_-_133574655_133574730	0.48011	CACAGUG	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chr2_+_57090707_57090899	0.480074	CACAGUG	BC021359|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_010274|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK167152|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	U60987|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK034353|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK151189|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	D50430|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr15_+_103333554_103333728	0.47852	CACAGUG	L01695|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent	NM_008800|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr18_+_35758269_35758376	0.478391	CACAGUG	AK146327|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK167545|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169207|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169411|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK154453|Paip2|67869|polyadenylate-binding protein-interacting protein 2	BC010190|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK150957|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK005462|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK009909|Paip2|67869|polyadenylate-binding protein-interacting protein 2	NM_026420|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr6_-_13627853_13628000	0.478101	CACAGUG	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr18_-_6241497_6241528	0.478087	CACAGUG	BC069920|Kif5b|16573|kinesin family member 5B	BC090841|Kif5b|16573|kinesin family member 5B	BC040800|Kif5b|16573|kinesin family member 5B	AK133535|Kif5b|16573|kinesin family member 5B	AK136307|Kif5b|16573|kinesin family member 5B	NM_008448|Kif5b|16573|kinesin family member 5B
mm9_v1_chr10_-_78054639_78054708	0.475242	CACAGUG	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr6_+_88034462_88034491	0.468676	CACAGUG	NM_133933|Rpn1|103963|ribophorin I
mm9_v1_chr4_-_55545337_55545348	0.465074	CACAGUG	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr2_-_68309996_68310080	0.464859	CACAGUG	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr17_-_43013320_43013409	0.462079	CACAGUG	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr7_-_135605026_135605189	0.4591	CACAGUG	NM_009383|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1	AK132677|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm9_v1_chr15_+_58247016_58247063	0.454611	CACAGUG	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr2_-_156904966_156905000	0.454572	CACAGUG	AK147227|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene	NM_001164663|9830001H06Rik|320706|RIKEN cDNA 9830001H06 gene
mm9_v1_chr8_-_125222837_125223008	0.453594	CACAGUG	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr2_-_59963796_59963833	0.451936	CACAGUG	NM_001001182|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK147737|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr11_-_88579517_88579542	0.451407	CACAGUG	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr8_-_80248313_80248382	0.44807	CACAGUG	BC008277|Ednra|13617|endothelin receptor type A	AK017486|Ednra|13617|endothelin receptor type A	NM_010332|Ednra|13617|endothelin receptor type A	AK042211|Ednra|13617|endothelin receptor type A
mm9_v1_chr19_+_8831563_8831725	0.448008	CACAGUG	BC005594|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	NM_016813|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK086527|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK079583|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK133883|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK143640|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK167518|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AF093140|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK077644|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK088634|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)	AK199824|Nxf1|53319|nuclear RNA export factor 1 homolog (S. cerevisiae)
mm9_v1_chr3_+_84756090_84756352	0.445876	CACAGUG	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr8_+_71404452_71404464	0.445623	CACAGUG	AK080872|Lpl|16956|lipoprotein lipase	AK150328|Lpl|16956|lipoprotein lipase	AK150488|Lpl|16956|lipoprotein lipase	AK150505|Lpl|16956|lipoprotein lipase	AK150532|Lpl|16956|lipoprotein lipase	AK150577|Lpl|16956|lipoprotein lipase	AK150585|Lpl|16956|lipoprotein lipase	AK150593|Lpl|16956|lipoprotein lipase	AK150691|Lpl|16956|lipoprotein lipase	AK150984|Lpl|16956|lipoprotein lipase	AK150990|Lpl|16956|lipoprotein lipase	AK151006|Lpl|16956|lipoprotein lipase	AK151049|Lpl|16956|lipoprotein lipase	AK151093|Lpl|16956|lipoprotein lipase	AK151099|Lpl|16956|lipoprotein lipase	AK151105|Lpl|16956|lipoprotein lipase	AK151112|Lpl|16956|lipoprotein lipase	AK151216|Lpl|16956|lipoprotein lipase	AK151563|Lpl|16956|lipoprotein lipase	AK151679|Lpl|16956|lipoprotein lipase	AK151698|Lpl|16956|lipoprotein lipase	AK151727|Lpl|16956|lipoprotein lipase	AK151772|Lpl|16956|lipoprotein lipase	AK151866|Lpl|16956|lipoprotein lipase	AK151870|Lpl|16956|lipoprotein lipase	AK151872|Lpl|16956|lipoprotein lipase	AK152014|Lpl|16956|lipoprotein lipase	AK152035|Lpl|16956|lipoprotein lipase	AK152049|Lpl|16956|lipoprotein lipase	AK152079|Lpl|16956|lipoprotein lipase	AK152238|Lpl|16956|lipoprotein lipase	AK152350|Lpl|16956|lipoprotein lipase	AK152657|Lpl|16956|lipoprotein lipase	AK152706|Lpl|16956|lipoprotein lipase	AK152775|Lpl|16956|lipoprotein lipase	AK152869|Lpl|16956|lipoprotein lipase	AK152956|Lpl|16956|lipoprotein lipase	AK153006|Lpl|16956|lipoprotein lipase	AK153148|Lpl|16956|lipoprotein lipase	AK153242|Lpl|16956|lipoprotein lipase	AK153425|Lpl|16956|lipoprotein lipase	AK153428|Lpl|16956|lipoprotein lipase	AK155917|Lpl|16956|lipoprotein lipase	AK159268|Lpl|16956|lipoprotein lipase	NM_008509|Lpl|16956|lipoprotein lipase	AK150355|Lpl|16956|lipoprotein lipase	AK152481|Lpl|16956|lipoprotein lipase	AK170486|Lpl|16956|lipoprotein lipase	AK017272|Lpl|16956|lipoprotein lipase	AK150375|Lpl|16956|lipoprotein lipase	AK150646|Lpl|16956|lipoprotein lipase	AK152251|Lpl|16956|lipoprotein lipase	AK154419|Lpl|16956|lipoprotein lipase	BC003305|Lpl|16956|lipoprotein lipase
mm9_v1_chr3_-_32264572_32264614	0.444439	CACAGUG	NM_009517|Zmat3|22401|zinc finger matrin type 3	BC023726|Zmat3|22401|zinc finger matrin type 3
mm9_v1_chr11_+_105042843_105042862	0.441801	CACAGUG	AK165667|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_001112705|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)	NM_011903|Tlk2|24086|tousled-like kinase 2 (Arabidopsis)
mm9_v1_chr16_-_50432421_50432504	0.439119	CACAGUG	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr5_-_138227888_138227970	0.436607	CACAGUG	AK154415|Mepce|231803|methylphosphate capping enzyme	NM_144913|Mepce|231803|methylphosphate capping enzyme
mm9_v1_chr5_-_22056086_22056211	0.436419	CACAGUG	AK166537|Orc5|26429|origin recognition complex, subunit 5	AK169683|Orc5|26429|origin recognition complex, subunit 5	AJ007360|Orc5|26429|origin recognition complex, subunit 5	AK144983|Orc5|26429|origin recognition complex, subunit 5	NM_011959|Orc5|26429|origin recognition complex, subunit 5	AK165912|Orc5|26429|origin recognition complex, subunit 5	BC006927|Orc5|26429|origin recognition complex, subunit 5	AK084683|Orc5|26429|origin recognition complex, subunit 5
mm9_v1_chr12_+_16817770_16817770	0.427068	CACAGUG	NM_033270|E2f6|50496|E2F transcription factor 6
mm9_v1_chr9_-_75257729_75257901	0.424131	CACAGUG	AK011505|Mapk6|50772|mitogen-activated protein kinase 6	AK044752|Mapk6|50772|mitogen-activated protein kinase 6	BC100385|Mapk6|50772|mitogen-activated protein kinase 6	NM_015806|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr10_-_62801726_62801784	0.422532	CACAGUG	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr2_-_63936044_63936094	0.420907	CACAGUG	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr11_+_79153388_79153393	0.415027	CACAGUG	AK085050|Nf1|18015|neurofibromatosis 1	NM_010897|Nf1|18015|neurofibromatosis 1
mm9_v1_chr4_-_134828503_134828682	0.409113	CACAGUG	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr16_+_32332294_32332380	0.406785	CACAGUG	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr2_+_181231870_181232009	0.402877	CACAGUG	AK171825|Tpd52l2|66314|tumor protein D52-like 2	AK147885|Tpd52l2|66314|tumor protein D52-like 2	AK161092|Tpd52l2|66314|tumor protein D52-like 2	AK013188|Tpd52l2|66314|tumor protein D52-like 2	AK051268|Tpd52l2|66314|tumor protein D52-like 2	AK160727|Tpd52l2|66314|tumor protein D52-like 2	AK013085|Tpd52l2|66314|tumor protein D52-like 2	AK155987|Tpd52l2|66314|tumor protein D52-like 2	AK159925|Tpd52l2|66314|tumor protein D52-like 2	BC006886|Tpd52l2|66314|tumor protein D52-like 2	NM_025482|Tpd52l2|66314|tumor protein D52-like 2
mm9_v1_chr18_-_24179208_24179311	0.402577	CACAGUG	AK146726|Zfp191|59057|zinc finger protein 191	BC054832|Zfp191|59057|zinc finger protein 191	NM_021559|Zfp191|59057|zinc finger protein 191	AY832930|Zfp191|59057|zinc finger protein 191
mm9_v1_chr15_-_90880241_90880381	0.401415	CACAGUG	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr11_-_68200284_68200327	0.399755	CACAGUG	NM_008744|Ntn1|18208|netrin 1
mm9_v1_chr3_-_51364525_51364799	0.399438	CACAGUG	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr2_-_115890247_115890356	0.39678	CACAGUG	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr11_-_59104252_59104253	0.396123	CACAGUG	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chr2_-_179711350_179711395	0.388507	CACAGUG	NM_001081092|Taf4a|228980|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr4_-_124539414_124539476	0.377241	CACAGUG	BC065047|Maneal|215090|mannosidase, endo-alpha-like	NM_001007573|Maneal|215090|mannosidase, endo-alpha-like
mm9_v1_chr15_-_77949709_77949709	0.377202	CACAGUG	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr3_-_157587998_157588029	0.375589	CACAGUG	AK002480|Cth|107869|cystathionase (cystathionine gamma-lyase)	BC019483|Cth|107869|cystathionase (cystathionine gamma-lyase)	AY083352|Cth|107869|cystathionase (cystathionine gamma-lyase)	NM_145953|Cth|107869|cystathionase (cystathionine gamma-lyase)
mm9_v1_chr14_+_48740495_48740543	0.37555	CACAGUG	AK030564|Peli2|93834|pellino 2	AK045515|Peli2|93834|pellino 2	NM_033602|Peli2|93834|pellino 2
mm9_v1_chr17_+_15636851_15636923	0.366507	CACAGUG	AK085037|Tbp|21374|TATA box binding protein	NM_013684|Tbp|21374|TATA box binding protein	BC016476|Tbp|21374|TATA box binding protein	AK089397|Tbp|21374|TATA box binding protein	BC050136|Tbp|21374|TATA box binding protein	U63933|Tbp|21374|TATA box binding protein	BC012685|Tbp|21374|TATA box binding protein
mm9_v1_chr5_-_23536487_23536520	0.363322	CACAGUG	BC060692|Fam126a|84652|family with sequence similarity 126, member A	AK155209|Fam126a|84652|family with sequence similarity 126, member A	NM_053090|Fam126a|84652|family with sequence similarity 126, member A
mm9_v1_chr12_-_99816091_99816149	0.361845	CACAGUG	BC132487|Kcnk10|72258|potassium channel, subfamily K, member 10	BC137869|Kcnk10|72258|potassium channel, subfamily K, member 10	AK082153|Kcnk10|72258|potassium channel, subfamily K, member 10	NM_029911|Kcnk10|72258|potassium channel, subfamily K, member 10
mm9_v1_chr11_+_49064013_49064076	0.360763	CACAGUG	AK155322|Mgat1|17308|mannoside acetylglucosaminyltransferase 1	AK004760|Mgat1|17308|mannoside acetylglucosaminyltransferase 1	NM_001110150|Mgat1|17308|mannoside acetylglucosaminyltransferase 1
mm9_v1_chr2_-_79969095_79969127	0.353498	CACAGUG	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr3_+_37538808_37538883	0.351255	CACAGUG	BC053428|Spry1|24063|sprouty homolog 1 (Drosophila)	NM_011896|Spry1|24063|sprouty homolog 1 (Drosophila)	AK014578|Spry1|24063|sprouty homolog 1 (Drosophila)	AK140405|Spry1|24063|sprouty homolog 1 (Drosophila)	BC039139|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr8_-_3279545_3279616	0.346283	CACAGUG	AK052187|Insr|16337|insulin receptor	NM_010568|Insr|16337|insulin receptor
mm9_v1_chr13_-_64376186_64376295	0.338943	CACAGUG	BC057357|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	BC049794|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	AK161345|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)	NM_172587|Cdc14b|218294|CDC14 cell division cycle 14 homolog B (S. cerevisiae)
mm9_v1_chr18_+_23910833_23910892	0.336865	CACAGUG	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chrX_+_138662479_138662479	0.335869	CACAGUG	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr3_-_50247306_50247534	0.335708	CACAGUG	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr5_-_144493077_144493148	0.33163	CACAGUG	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr12_-_119539909_119539930	0.330613	CACAGUG	NM_001166385|Sp4|20688|trans-acting transcription factor 4	NM_009239|Sp4|20688|trans-acting transcription factor 4
mm9_v1_chr2_-_31939210_31939226	0.326149	CACAGUG	AK079514|Fam78a|241303|family with sequence similarity 78, member A	NM_175511|Fam78a|241303|family with sequence similarity 78, member A	AK077626|Fam78a|241303|family with sequence similarity 78, member A
mm9_v1_chr9_-_44689356_44689381	0.320018	CACAGUG	NM_001081049|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1
mm9_v1_chr6_+_114232618_114232629	0.317852	CACAGUG	NM_178703|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr5_-_125342474_125342590	0.31732	CACAGUG	BC021492|Ccdc92|215707|coiled-coil domain containing 92	AK028192|Ccdc92|215707|coiled-coil domain containing 92	AK165371|Ccdc92|215707|coiled-coil domain containing 92	NM_144819|Ccdc92|215707|coiled-coil domain containing 92
mm9_v1_chr14_-_62058627_62058783	0.317221	CACAGUG	AF020772|Kpna3|16648|karyopherin (importin) alpha 3	AK011559|Kpna3|16648|karyopherin (importin) alpha 3	AK049373|Kpna3|16648|karyopherin (importin) alpha 3	BC026885|Kpna3|16648|karyopherin (importin) alpha 3	AK161664|Kpna3|16648|karyopherin (importin) alpha 3	NM_008466|Kpna3|16648|karyopherin (importin) alpha 3
mm9_v1_chr7_+_71432538_71432641	0.315648	CACAGUG	AK088715|Mtmr10|233315|myotubularin related protein 10	NM_172742|Mtmr10|233315|myotubularin related protein 10	BC041672|Mtmr10|233315|myotubularin related protein 10
mm9_v1_chr2_+_154959216_154959300	0.30965	CACAGUG	NM_008395|Itch|16396|itchy, E3 ubiquitin protein ligase	AK082003|Itch|16396|itchy, E3 ubiquitin protein ligase	AK163006|Itch|16396|itchy, E3 ubiquitin protein ligase	AK141800|Itch|16396|itchy, E3 ubiquitin protein ligase	AK037940|Itch|16396|itchy, E3 ubiquitin protein ligase	BC062934|Itch|16396|itchy, E3 ubiquitin protein ligase	AK020167|Itch|16396|itchy, E3 ubiquitin protein ligase	AK220164|Itch|16396|itchy, E3 ubiquitin protein ligase	AK048303|Itch|16396|itchy, E3 ubiquitin protein ligase	BC064678|Itch|16396|itchy, E3 ubiquitin protein ligase	AF037454|Itch|16396|itchy, E3 ubiquitin protein ligase
mm9_v1_chr6_-_92431385_92431385	0.308942	CACAGUG	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr4_-_33037783_33037814	0.306848	CACAGUG	AK135024|Ankrd6|140577|ankyrin repeat domain 6	NM_001012451|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr18_-_52689279_52689397	0.306368	CACAGUG	AK159199|Lox|16948|lysyl oxidase	AK159263|Lox|16948|lysyl oxidase	AK166386|Lox|16948|lysyl oxidase	BC018439|Lox|16948|lysyl oxidase	AK141995|Lox|16948|lysyl oxidase	NM_010728|Lox|16948|lysyl oxidase
mm9_v1_chr6_+_141197789_141197831	0.303231	CACAGUG	AF099187|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	NM_018779|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	BC138265|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited	BC138266|Pde3a|54611|phosphodiesterase 3A, cGMP inhibited
mm9_v1_chr2_+_57090045_57090088	0.302212	CACAGUG	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr12_+_117643874_117643931	0.299645	CACAGUG	AK138871|Ncapg2|76044|non-SMC condensin II complex, subunit G2	NM_133762|Ncapg2|76044|non-SMC condensin II complex, subunit G2
mm9_v1_chr17_+_57129686_57129814	0.292971	CACAGUG	NM_017393|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK145765|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	BC001998|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AJ005253|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK004024|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK168053|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK002238|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK147719|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)
mm9_v1_chrX_+_98449866_98450159	0.291058	CACAGUG	AF114260|Foxo4|54601|forkhead box O4	NM_018789|Foxo4|54601|forkhead box O4	AK157830|Foxo4|54601|forkhead box O4	BC099460|Foxo4|54601|forkhead box O4	BC139275|Foxo4|54601|forkhead box O4	BC139304|Foxo4|54601|forkhead box O4	AB032770|Foxo4|54601|forkhead box O4	AB221664|Foxo4|54601|forkhead box O4
mm9_v1_chrX_-_12339096_12339247	0.291054	CACAGUG	AB019028|Med14|26896|mediator complex subunit 14	NM_001048208|Med14|26896|mediator complex subunit 14	NM_012005|Med14|26896|mediator complex subunit 14	BC065072|Med14|26896|mediator complex subunit 14
mm9_v1_chr5_-_23953594_23953663	0.290405	CACAGUG	AY603379|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AK008109|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	BC019547|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AB030183|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	NM_022418|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1
mm9_v1_chr7_-_144506112_144506127	0.290206	CACAGUG	AK220542|Ebf3|13593|early B-cell factor 3	NM_001113414|Ebf3|13593|early B-cell factor 3	NM_001113415|Ebf3|13593|early B-cell factor 3	NM_010096|Ebf3|13593|early B-cell factor 3
mm9_v1_chr2_-_75542552_75542719	0.289977	CACAGUG	BC003340|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK144247|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK029360|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK142347|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	BC026943|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	NM_010902|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	U20532|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr11_-_42134548_42134554	0.28879	CACAGUG	AK135145|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	AK137331|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_001099641|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_008068|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr10_+_7400978_7401034	0.286136	CACAGUG	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chr2_-_51004604_51004631	0.284123	CACAGUG	BC009002|Rnd3|74194|Rho family GTPase 3	AK035195|Rnd3|74194|Rho family GTPase 3	AK048635|Rnd3|74194|Rho family GTPase 3	AK011442|Rnd3|74194|Rho family GTPase 3	NM_028810|Rnd3|74194|Rho family GTPase 3
mm9_v1_chr5_+_75552144_75552190	0.283148	CACAGUG	AK163952|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	BC053036|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	NM_001083316|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr4_+_101092307_101092393	0.281853	CACAGUG	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr15_+_80064503_80064578	0.279545	CACAGUG	AK163389|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	NM_178719|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK041184|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK038466|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK044773|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK050546|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK080375|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	BC094597|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)
mm9_v1_chr10_+_126415772_126415772	0.278252	CACAGUG	BC085142|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	NM_001113470|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm9_v1_chr19_+_53384990_53385011	0.277858	CACAGUG	NM_001008542|Mxi1|17859|Max interacting protein 1	AK154538|Mxi1|17859|Max interacting protein 1	BC064453|Mxi1|17859|Max interacting protein 1
mm9_v1_chr1_-_33814590_33814594	0.273845	CACAGUG	BC016230|Bag2|213539|BCL2-associated athanogene 2	NM_145392|Bag2|213539|BCL2-associated athanogene 2
mm9_v1_chr3_-_78949796_78949796	0.272188	CACAGUG	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr10_+_17775737_17775881	0.26994	CACAGUG	NM_001111065|Reps1|19707|RalBP1 associated Eps domain containing protein	NM_009048|Reps1|19707|RalBP1 associated Eps domain containing protein	BC087547|Reps1|19707|RalBP1 associated Eps domain containing protein	AK150284|Reps1|19707|RalBP1 associated Eps domain containing protein	AK151309|Reps1|19707|RalBP1 associated Eps domain containing protein
mm9_v1_chr17_-_84587278_84587289	0.267522	CACAGUG	AK159513|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK160955|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK170763|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	NM_001001806|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr4_-_46151281_46151362	0.26694	CACAGUG	BC057893|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK165359|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK155456|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK028258|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	NM_173033|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	AK089417|Tstd2|272027|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
mm9_v1_chr11_-_40568710_40568789	0.265698	CACAGUG	AK167486|Ccng1|12450|cyclin G1	AK159429|Ccng1|12450|cyclin G1	AK153392|Ccng1|12450|cyclin G1	AK167052|Ccng1|12450|cyclin G1	AK159831|Ccng1|12450|cyclin G1	L49507|Ccng1|12450|cyclin G1	Z37110|Ccng1|12450|cyclin G1	AK160411|Ccng1|12450|cyclin G1	AK128957|Ccng1|12450|cyclin G1	AK147026|Ccng1|12450|cyclin G1	AK170397|Ccng1|12450|cyclin G1	AK143114|Ccng1|12450|cyclin G1	NM_009831|Ccng1|12450|cyclin G1
mm9_v1_chr7_-_133935952_133936049	0.263297	CACAGUG	BC001993|Ppp4c|56420|protein phosphatase 4, catalytic subunit	NM_019674|Ppp4c|56420|protein phosphatase 4, catalytic subunit	AF088911|Ppp4c|56420|protein phosphatase 4, catalytic subunit	BC013806|Ppp4c|56420|protein phosphatase 4, catalytic subunit
mm9_v1_chr11_+_20443168_20443285	0.262391	CACAGUG	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr11_+_29273673_29273774	0.262236	CACAGUG	AK051140|Ccdc88a|108686|coiled coil domain containing 88A	NM_176841|Ccdc88a|108686|coiled coil domain containing 88A
mm9_v1_chr13_-_102462584_102462601	0.262175	CACAGUG	AK046259|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001024955|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr6_+_116288075_116288140	0.258724	CACAGUG	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr2_+_35477498_35477550	0.254164	CACAGUG	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr12_+_112404645_112404765	0.253196	CACAGUG	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr11_+_72861327_72861399	0.251978	CACAGUG	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr8_-_25549415_25549421	0.250041	CACAGUG	AK007441|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene	NM_026931|1810011O10Rik|69068|RIKEN cDNA 1810011O10 gene
mm9_v1_chr4_+_109079704_109079727	0.246009	CACAGUG	AK048659|Ttc39a|230603|tetratricopeptide repeat domain 39A	NM_153392|Ttc39a|230603|tetratricopeptide repeat domain 39A	AK082733|Ttc39a|230603|tetratricopeptide repeat domain 39A	BC023883|Ttc39a|230603|tetratricopeptide repeat domain 39A
mm9_v1_chr17_+_75404865_75404880	0.243744	CACAGUG	NM_019919|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr14_-_109313447_109313461	0.242149	CACAGUG	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr15_-_98748371_98748661	0.241631	CACAGUG	AY052398|Lmbr1l|74775|limb region 1 like	AK003656|Lmbr1l|74775|limb region 1 like	BC023397|Lmbr1l|74775|limb region 1 like	AK170328|Lmbr1l|74775|limb region 1 like	AK143891|Lmbr1l|74775|limb region 1 like	AK030589|Lmbr1l|74775|limb region 1 like	AK049110|Lmbr1l|74775|limb region 1 like	NM_029098|Lmbr1l|74775|limb region 1 like	AK154968|Lmbr1l|74775|limb region 1 like
mm9_v1_chr18_-_60872888_60873042	0.237602	CACAGUG	AF049894|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AF074926|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC066098|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC079561|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	NM_008306|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr5_-_136020946_136020998	0.235566	CACAGUG	AK147246|Hip1|215114|huntingtin interacting protein 1	AK147269|Hip1|215114|huntingtin interacting protein 1	AK166346|Hip1|215114|huntingtin interacting protein 1	AK011828|Hip1|215114|huntingtin interacting protein 1	BC017516|Hip1|215114|huntingtin interacting protein 1	AK087586|Hip1|215114|huntingtin interacting protein 1	NM_146001|Hip1|215114|huntingtin interacting protein 1
mm9_v1_chr5_-_20457608_20457646	0.232836	CACAGUG	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chr8_+_107694536_107694875	0.232371	CACAGUG	AK089094|Cbfb|12400|core binding factor beta	NM_001161456|Cbfb|12400|core binding factor beta	NM_001161457|Cbfb|12400|core binding factor beta	NM_001161458|Cbfb|12400|core binding factor beta	NM_022309|Cbfb|12400|core binding factor beta	D14570|Cbfb|12400|core binding factor beta	D14571|Cbfb|12400|core binding factor beta	D14572|Cbfb|12400|core binding factor beta	BC026749|Cbfb|12400|core binding factor beta	BC040752|Cbfb|12400|core binding factor beta	BC006763|Cbfb|12400|core binding factor beta	L03305|Cbfb|12400|core binding factor beta	L03306|Cbfb|12400|core binding factor beta
mm9_v1_chrX_+_69208336_69208359	0.231267	CACAGUG	BC060135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	NM_001081135|Prrg3|208748|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm9_v1_chr6_-_118147735_118147761	0.230282	CACAGUG	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr7_+_123236814_123237015	0.227491	CACAGUG	AK003415|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK170172|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	BC072575|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK168206|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK167571|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK144059|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK169309|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AB025407|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	NM_019772|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK180958|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene	AK182617|1110004F10Rik|56372|RIKEN cDNA 1110004F10 gene
mm9_v1_chr8_+_81033220_81033473	0.226589	CACAGUG	NM_029736|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK160402|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK079901|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152752|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152849|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK010834|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK165983|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK040517|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116666|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116717|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825926|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825927|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825928|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm9_v1_chr6_+_119429620_119429803	0.226024	CACAGUG	NM_133940|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK036124|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK084506|Fbxl14|101358|F-box and leucine-rich repeat protein 14	AK155154|Fbxl14|101358|F-box and leucine-rich repeat protein 14	BC021329|Fbxl14|101358|F-box and leucine-rich repeat protein 14
mm9_v1_chr6_-_120443824_120443824	0.225118	CACAGUG	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr2_+_156301543_156301577	0.222287	CACAGUG	NM_001006664|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr11_+_79806552_79806633	0.22175	CACAGUG	AK141264|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	BC064461|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_001163018|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_199196|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr15_+_12134833_12134872	0.22113	CACAGUG	AK076161|Mtmr12|268783|myotubularin related protein 12	BC054352|Mtmr12|268783|myotubularin related protein 12	NM_172958|Mtmr12|268783|myotubularin related protein 12	AK050099|Mtmr12|268783|myotubularin related protein 12	AK050236|Mtmr12|268783|myotubularin related protein 12	BC042573|Mtmr12|268783|myotubularin related protein 12
mm9_v1_chr6_+_146673451_146673548	0.221031	CACAGUG	NM_172734|Stk38l|232533|serine/threonine kinase 38 like	AK052288|Stk38l|232533|serine/threonine kinase 38 like	AK045971|Stk38l|232533|serine/threonine kinase 38 like	AY223819|Stk38l|232533|serine/threonine kinase 38 like
mm9_v1_chr9_-_65732843_65732979	0.220252	CACAGUG	AK078393|Trip4|56404|thyroid hormone receptor interactor 4	AK150752|Trip4|56404|thyroid hormone receptor interactor 4	BC021316|Trip4|56404|thyroid hormone receptor interactor 4	AK039024|Trip4|56404|thyroid hormone receptor interactor 4	AK146298|Trip4|56404|thyroid hormone receptor interactor 4	NM_001170907|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr2_+_31428244_31428356	0.219186	CACAGUG	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chr15_+_34012415_34012599	0.218413	CACAGUG	AK087486|Mtdh|67154|metadherin	AK156119|Mtdh|67154|metadherin	AK029915|Mtdh|67154|metadherin	NM_026002|Mtdh|67154|metadherin	AK011808|Mtdh|67154|metadherin	AK151810|Mtdh|67154|metadherin	AK171976|Mtdh|67154|metadherin	AK151269|Mtdh|67154|metadherin	AF501309|Mtdh|67154|metadherin	AK009253|Mtdh|67154|metadherin	BC023115|Mtdh|67154|metadherin
mm9_v1_chr10_-_36858671_36858801	0.217338	CACAGUG	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr15_-_78548542_78548542	0.215724	CACAGUG	BC094219|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2	NM_183141|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2
mm9_v1_chr7_-_138553991_138554026	0.213641	CACAGUG	BC048183|Ikzf5|67143|IKAROS family zinc finger 5	BC058537|Ikzf5|67143|IKAROS family zinc finger 5	NM_175115|Ikzf5|67143|IKAROS family zinc finger 5	AK153883|Ikzf5|67143|IKAROS family zinc finger 5	AK033716|Ikzf5|67143|IKAROS family zinc finger 5	BC089455|Ikzf5|67143|IKAROS family zinc finger 5	AK169384|Ikzf5|67143|IKAROS family zinc finger 5
mm9_v1_chr3_+_84668066_84668066	0.213392	CACAGUG	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr3_-_107563372_107563394	0.210427	CACAGUG	AK154261|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113529|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113530|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_007778|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chr2_+_173563060_173563229	0.208712	CACAGUG	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr18_-_14841294_14841422	0.205039	CACAGUG	AK083887|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161369|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161370|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161371|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_009280|Ss18|268996|synovial sarcoma translocation, Chromosome 18	X93357|Ss18|268996|synovial sarcoma translocation, Chromosome 18
mm9_v1_chrX_+_135448968_135449043	0.203352	CACAGUG	NM_013724|Nrk|27206|Nik related kinase	AK041377|Nrk|27206|Nik related kinase	BC068311|Nrk|27206|Nik related kinase	AB020741|Nrk|27206|Nik related kinase
mm9_v1_chrX_-_57657081_57657155	0.199796	CACAGUG	AK143860|Atp11c|320940|ATPase, class VI, type 11C	BC106087|Atp11c|320940|ATPase, class VI, type 11C	AK079479|Atp11c|320940|ATPase, class VI, type 11C	AK043065|Atp11c|320940|ATPase, class VI, type 11C	AK039243|Atp11c|320940|ATPase, class VI, type 11C	NM_001001798|Atp11c|320940|ATPase, class VI, type 11C	NM_001037863|Atp11c|320940|ATPase, class VI, type 11C
mm9_v1_chr1_+_154246959_154247050	0.199714	CACAGUG	AK085716|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK052838|Glt25d2|269132|glycosyltransferase 25 domain containing 2	NM_177756|Glt25d2|269132|glycosyltransferase 25 domain containing 2	AK134084|Glt25d2|269132|glycosyltransferase 25 domain containing 2	BC068118|Glt25d2|269132|glycosyltransferase 25 domain containing 2
mm9_v1_chr11_+_69715343_69715451	0.199212	CACAGUG	NM_001013414|Neurl4|216860|neuralized homolog 4 (Drosophila)	AK157107|Neurl4|216860|neuralized homolog 4 (Drosophila)
mm9_v1_chr5_-_46247789_46247790	0.19885	CACAGUG	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr9_+_44412931_44412987	0.196629	CACAGUG	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr19_+_45225176_45225204	0.196471	CACAGUG	BC018246|Tlx1|21908|T-cell leukemia, homeobox 1	NM_021901|Tlx1|21908|T-cell leukemia, homeobox 1
mm9_v1_chr3_+_94641479_94641499	0.195656	CACAGUG	NM_001165948|Pogz|229584|pogo transposable element with ZNF domain	NM_172683|Pogz|229584|pogo transposable element with ZNF domain	BC065134|Pogz|229584|pogo transposable element with ZNF domain	BC066108|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr7_+_100023762_100023966	0.194553	CACAGUG	NM_028243|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011112|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK051677|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK166282|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011816|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC089575|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK054462|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC055022|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC026424|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)
mm9_v1_chr5_+_54389740_54389855	0.193302	CACAGUG	AK173183|Stim2|116873|stromal interaction molecule 2	NM_001081103|Stim2|116873|stromal interaction molecule 2	AK080310|Stim2|116873|stromal interaction molecule 2	BC137881|Stim2|116873|stromal interaction molecule 2	BC145001|Stim2|116873|stromal interaction molecule 2
mm9_v1_chr10_+_83006673_83006768	0.192297	CACAGUG	NM_001033375|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK145000|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK166233|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK043911|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK038582|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene
mm9_v1_chr10_+_93498745_93498948	0.191635	CACAGUG	AK044341|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	NM_053072|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	AK173157|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139019|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139022|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6
mm9_v1_chr17_+_25359526_25359671	0.190548	CACAGUG	AK004898|Unkl|74154|unkempt-like (Drosophila)	NM_028789|Unkl|74154|unkempt-like (Drosophila)	BC150842|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr10_-_90545483_90545514	0.189892	CACAGUG	AK220340|Apaf1|11783|apoptotic peptidase activating factor 1	NM_001042558|Apaf1|11783|apoptotic peptidase activating factor 1	NM_009684|Apaf1|11783|apoptotic peptidase activating factor 1	BC045144|Apaf1|11783|apoptotic peptidase activating factor 1
mm9_v1_chr2_-_154718506_154718641	0.188576	CACAGUG	BC113766|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC003848|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK019156|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK143553|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166862|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145401|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK012338|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	BC100539|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK076056|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK011503|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK042004|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK166866|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	AK145434|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)	NM_026030|Eif2s2|67204|eukaryotic translation initiation factor 2, subunit 2 (beta)
mm9_v1_chr1_-_57028171_57028177	0.184912	CACAGUG	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr15_+_100446018_100446129	0.183591	CACAGUG	AK002595|Dazap2|23994|DAZ associated protein 2	AK145398|Dazap2|23994|DAZ associated protein 2	AK146970|Dazap2|23994|DAZ associated protein 2	L10906|Dazap2|23994|DAZ associated protein 2	AK088916|Dazap2|23994|DAZ associated protein 2	AK132139|Dazap2|23994|DAZ associated protein 2	AK137246|Dazap2|23994|DAZ associated protein 2	BC014808|Dazap2|23994|DAZ associated protein 2	NM_011873|Dazap2|23994|DAZ associated protein 2	BC083347|Dazap2|23994|DAZ associated protein 2	AF085348|Dazap2|23994|DAZ associated protein 2
mm9_v1_chr2_+_119151519_119151564	0.183289	CACAGUG	AK052322|Dll4|54485|delta-like 4 (Drosophila)	NM_019454|Dll4|54485|delta-like 4 (Drosophila)	AK004739|Dll4|54485|delta-like 4 (Drosophila)	AK031699|Dll4|54485|delta-like 4 (Drosophila)	AK165517|Dll4|54485|delta-like 4 (Drosophila)	AK171717|Dll4|54485|delta-like 4 (Drosophila)	BC049130|Dll4|54485|delta-like 4 (Drosophila)	AF253469|Dll4|54485|delta-like 4 (Drosophila)	BC042497|Dll4|54485|delta-like 4 (Drosophila)
mm9_v1_chr13_+_112476313_112476385	0.181675	CACAGUG	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr4_+_62626582_62626639	0.180655	CACAGUG	NM_028326|Zfp618|72701|zinc fingerprotein 618	AK012848|Zfp618|72701|zinc fingerprotein 618
mm9_v1_chr4_+_118100682_118100801	0.178236	CACAGUG	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr12_+_82960953_82961016	0.177486	CACAGUG	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chr10_-_14264800_14264841	0.175726	CACAGUG	AB183545|Gpr126|215798|G protein-coupled receptor 126	NM_001002268|Gpr126|215798|G protein-coupled receptor 126
mm9_v1_chr14_+_31638767_31638861	0.174593	CACAGUG	AK007740|Tmem110|69179|transmembrane protein 110	NM_028839|Tmem110|69179|transmembrane protein 110	AK009341|Tmem110|69179|transmembrane protein 110	AK076341|Tmem110|69179|transmembrane protein 110	AK149088|Tmem110|69179|transmembrane protein 110	AK155257|Tmem110|69179|transmembrane protein 110
mm9_v1_chr16_+_37868418_37868496	0.172658	CACAGUG	AK090204|Lrrc58|320184|leucine rich repeat containing 58	AK049274|Lrrc58|320184|leucine rich repeat containing 58	NM_177093|Lrrc58|320184|leucine rich repeat containing 58
mm9_v1_chr5_+_89149887_89150001	0.170227	CACAGUG	AK045695|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK162120|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	NM_026735|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK150016|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK077320|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK172291|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104402|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104403|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK003346|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)
mm9_v1_chr5_-_135164426_135164540	0.168316	CACAGUG	BC063768|Limk1|16885|LIM-domain containing, protein kinase	AK141813|Limk1|16885|LIM-domain containing, protein kinase	AK164484|Limk1|16885|LIM-domain containing, protein kinase	U15159|Limk1|16885|LIM-domain containing, protein kinase	NM_010717|Limk1|16885|LIM-domain containing, protein kinase	U14166|Limk1|16885|LIM-domain containing, protein kinase
mm9_v1_chr1_-_134603848_134603902	0.167377	CACAGUG	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr1_-_52557130_52557348	0.167127	CACAGUG	U47008|Nab1|17936|Ngfi-A binding protein 1	BC016886|Nab1|17936|Ngfi-A binding protein 1	BC005627|Nab1|17936|Ngfi-A binding protein 1	NM_008667|Nab1|17936|Ngfi-A binding protein 1
mm9_v1_chr3_-_125641429_125641514	0.166187	CACAGUG	AK163650|Ugt8a|22239|UDP galactosyltransferase 8A	AK128994|Ugt8a|22239|UDP galactosyltransferase 8A	AK137364|Ugt8a|22239|UDP galactosyltransferase 8A	AK144005|Ugt8a|22239|UDP galactosyltransferase 8A	NM_011674|Ugt8a|22239|UDP galactosyltransferase 8A	AK078371|Ugt8a|22239|UDP galactosyltransferase 8A
mm9_v1_chr3_+_32335072_32335127	0.165806	CACAGUG	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr7_-_50745358_50745392	0.165286	CACAGUG	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr2_-_58210162_58210168	0.165272	CACAGUG	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr17_+_84911219_84911272	0.164735	CACAGUG	AK029252|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	NM_177606|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC125583|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC137804|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	BC021518|Plekhh2|213556|pleckstrin homology domain containing, family H (with MyTH4 domain) member 2
mm9_v1_chr15_+_100299408_100299504	0.164575	CACAGUG	NM_134093|Letmd1|68614|LETM1 domain containing 1	AK158718|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr7_-_91300359_91300442	0.163552	CACAGUG	BC018511|Fam108c|70178|family with sequence similarity 108, member C	NM_133722|Fam108c|70178|family with sequence similarity 108, member C
mm9_v1_chr9_-_16182674_16182674	0.162279	CACAGUG	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr11_-_96838940_96839063	0.161865	CACAGUG	GU126673|Sp2|78912|Sp2 transcription factor	AK139302|Sp2|78912|Sp2 transcription factor	BC086457|Sp2|78912|Sp2 transcription factor	BC021759|Sp2|78912|Sp2 transcription factor	AK078246|Sp2|78912|Sp2 transcription factor	AK156580|Sp2|78912|Sp2 transcription factor	NM_001080964|Sp2|78912|Sp2 transcription factor	NM_030220|Sp2|78912|Sp2 transcription factor
mm9_v1_chr17_+_15080188_15080199	0.160461	CACAGUG	AK028052|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083880|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083881|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_001083882|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene	NM_026451|1600012H06Rik|67912|RIKEN cDNA 1600012H06 gene
mm9_v1_chr6_-_95668770_95668830	0.159226	CACAGUG	BC080781|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK045176|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK042987|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK156263|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK167136|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172363|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172561|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172633|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	NM_011507|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit
mm9_v1_chr7_+_52690164_52690415	0.158312	CACAGUG	NM_030678|Gys1|14936|glycogen synthase 1, muscle	AK169344|Gys1|14936|glycogen synthase 1, muscle	AK170404|Gys1|14936|glycogen synthase 1, muscle	AK171426|Gys1|14936|glycogen synthase 1, muscle	AK171148|Gys1|14936|glycogen synthase 1, muscle	AK170585|Gys1|14936|glycogen synthase 1, muscle	X94616|Gys1|14936|glycogen synthase 1, muscle	BC131687|Gys1|14936|glycogen synthase 1, muscle	BC131688|Gys1|14936|glycogen synthase 1, muscle	BC152550|Gys1|14936|glycogen synthase 1, muscle	U53218|Gys1|14936|glycogen synthase 1, muscle	BC019389|Gys1|14936|glycogen synthase 1, muscle
mm9_v1_chr16_-_38550174_38550326	0.156541	CACAGUG	AK197458|Poglut1|224143|protein O-glucosyltransferase 1	AK215456|Poglut1|224143|protein O-glucosyltransferase 1	AK216766|Poglut1|224143|protein O-glucosyltransferase 1	AK036224|Poglut1|224143|protein O-glucosyltransferase 1	NM_172380|Poglut1|224143|protein O-glucosyltransferase 1	AK031608|Poglut1|224143|protein O-glucosyltransferase 1	AK041321|Poglut1|224143|protein O-glucosyltransferase 1	AK045278|Poglut1|224143|protein O-glucosyltransferase 1	AK035948|Poglut1|224143|protein O-glucosyltransferase 1	BC026809|Poglut1|224143|protein O-glucosyltransferase 1	AK082556|Poglut1|224143|protein O-glucosyltransferase 1	AK167641|Poglut1|224143|protein O-glucosyltransferase 1	AK079886|Poglut1|224143|protein O-glucosyltransferase 1
mm9_v1_chr3_-_153388047_153388152	0.154665	CACAGUG	BC131987|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC132317|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	BC058387|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	AK034804|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	NM_011372|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	Y11342|St6galnac3|20447|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm9_v1_chr17_-_10512217_10512250	0.152443	CACAGUG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr1_-_16609325_16609423	0.151522	CACAGUG	AK077997|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	BC020124|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK082233|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	NM_025773|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK042870|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK044463|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050679|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK015348|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK046086|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050923|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)
mm9_v1_chr5_-_46248719_46248778	0.150833	CACAGUG	BC066151|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK041987|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043498|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK154398|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK155421|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK083689|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043845|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	BC138563|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_001163073|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_178142|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr13_+_75844906_75844941	0.147842	CACAGUG	NM_138953|Ell2|192657|elongation factor RNA polymerase II 2
mm9_v1_chr17_+_4995073_4995073	0.147061	CACAGUG	NM_001085355|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr8_-_8660610_8660772	0.144861	CACAGUG	U30244|Efnb2|13642|ephrin B2	CT010381|Efnb2|13642|ephrin B2	U16819|Efnb2|13642|ephrin B2	L38847|Efnb2|13642|ephrin B2	NM_010111|Efnb2|13642|ephrin B2
mm9_v1_chr4_+_148478238_148478288	0.144438	CACAGUG	AK039227|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_001025296|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_010044|Dffa|13347|DNA fragmentation factor, alpha subunit	AK154488|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr6_-_88468710_88468869	0.142065	CACAGUG	AF145253|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AF222743|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK167484|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	BC003707|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK159349|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK153055|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK088473|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	NM_016906|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AB032902|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)
mm9_v1_chr3_-_102008512_102008615	0.141063	CACAGUG	AK167743|Vangl1|229658|vang-like 1 (van gogh, Drosophila)	AF481860|Vangl1|229658|vang-like 1 (van gogh, Drosophila)	NM_177545|Vangl1|229658|vang-like 1 (van gogh, Drosophila)
mm9_v1_chr15_+_58720783_58720964	0.140875	CACAGUG	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr9_+_66561492_66561635	0.139465	CACAGUG	NM_178396|Car12|76459|carbonic anyhydrase 12	AK052639|Car12|76459|carbonic anyhydrase 12	AK157977|Car12|76459|carbonic anyhydrase 12	AK037694|Car12|76459|carbonic anyhydrase 12	AK166132|Car12|76459|carbonic anyhydrase 12	BC031385|Car12|76459|carbonic anyhydrase 12	BC035941|Car12|76459|carbonic anyhydrase 12	AK170859|Car12|76459|carbonic anyhydrase 12	BC033432|Car12|76459|carbonic anyhydrase 12
mm9_v1_chrX_-_98417753_98417901	0.137839	CACAGUG	AK168604|Snx12|55988|sorting nexin 12	AK011257|Snx12|55988|sorting nexin 12	AK170403|Snx12|55988|sorting nexin 12	AK049561|Snx12|55988|sorting nexin 12	AK146833|Snx12|55988|sorting nexin 12	AF062484|Snx12|55988|sorting nexin 12	BC002009|Snx12|55988|sorting nexin 12	AK148235|Snx12|55988|sorting nexin 12	AK169569|Snx12|55988|sorting nexin 12	AK170992|Snx12|55988|sorting nexin 12	AK131838|Snx12|55988|sorting nexin 12	NM_001110310|Snx12|55988|sorting nexin 12	NM_001110311|Snx12|55988|sorting nexin 12	NM_018875|Snx12|55988|sorting nexin 12
mm9_v1_chr15_+_88906446_88906550	0.137309	CACAGUG	NM_026485|Trabd|67976|TraB domain containing	AK017745|Trabd|67976|TraB domain containing	AK146027|Trabd|67976|TraB domain containing	AK005300|Trabd|67976|TraB domain containing
mm9_v1_chr2_-_65962685_65962849	0.137225	CACAGUG	U70538|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC043331|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC003765|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK007135|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK135489|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK019995|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	NM_015736|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
mm9_v1_chr8_-_89409079_89409204	0.136504	CACAGUG	AK134934|N4bp1|80750|NEDD4 binding protein 1	AK172981|N4bp1|80750|NEDD4 binding protein 1	AK147522|N4bp1|80750|NEDD4 binding protein 1	NM_030563|N4bp1|80750|NEDD4 binding protein 1
mm9_v1_chr9_-_62994774_62994817	0.131421	CACAGUG	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr3_+_64913564_64913693	0.130541	CACAGUG	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr18_-_39078304_39078358	0.128813	CACAGUG	U67610|Fgf1|14164|fibroblast growth factor 1	AK035330|Fgf1|14164|fibroblast growth factor 1	NM_010197|Fgf1|14164|fibroblast growth factor 1
mm9_v1_chr2_-_102913613_102913693	0.12662	CACAGUG	AK046020|Pdhx|27402|pyruvate dehydrogenase complex, component X	BC061231|Pdhx|27402|pyruvate dehydrogenase complex, component X	AK083170|Pdhx|27402|pyruvate dehydrogenase complex, component X	AK166257|Pdhx|27402|pyruvate dehydrogenase complex, component X	AK047670|Pdhx|27402|pyruvate dehydrogenase complex, component X	AK050433|Pdhx|27402|pyruvate dehydrogenase complex, component X	NM_175094|Pdhx|27402|pyruvate dehydrogenase complex, component X
mm9_v1_chr10_+_94977721_94977835	0.122272	CACAGUG	AK005302|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK161968|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK005788|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC067069|Ube2n|93765|ubiquitin-conjugating enzyme E2N	NM_080560|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AY039837|Ube2n|93765|ubiquitin-conjugating enzyme E2N	Y09873|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC034898|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC052203|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC132630|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC138211|Ube2n|93765|ubiquitin-conjugating enzyme E2N
mm9_v1_chr5_+_3543815_3543891	0.119131	CACAGUG	AK008115|Fam133b|68152|family with sequence similarity 133, member B	AK019188|Fam133b|68152|family with sequence similarity 133, member B	NM_001042501|Fam133b|68152|family with sequence similarity 133, member B	AK020011|Fam133b|68152|family with sequence similarity 133, member B	BC147310|Fam133b|68152|family with sequence similarity 133, member B	BC147311|Fam133b|68152|family with sequence similarity 133, member B	BC172033|Fam133b|68152|family with sequence similarity 133, member B	BC027051|Fam133b|68152|family with sequence similarity 133, member B	AK161505|Fam133b|68152|family with sequence similarity 133, member B
mm9_v1_chr16_+_92058498_92058582	0.11846	CACAGUG	AK165590|Mrps6|121022|mitochondrial ribosomal protein S6	AB049943|Mrps6|121022|mitochondrial ribosomal protein S6	AY061856|Mrps6|121022|mitochondrial ribosomal protein S6	AK144718|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK166374|Mrps6|121022|mitochondrial ribosomal protein S6	AK167304|Mrps6|121022|mitochondrial ribosomal protein S6	NM_017391|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK167316|Mrps6|121022|mitochondrial ribosomal protein S6	BC027271|Mrps6|121022|mitochondrial ribosomal protein S6	NM_080456|Mrps6|121022|mitochondrial ribosomal protein S6
mm9_v1_chr14_-_76510534_76510637	0.11793	CACAGUG	AK173238|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	BC029731|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK004707|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK082912|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	NM_026177|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene	AK016681|1200011I18Rik|67467|RIKEN cDNA 1200011I18 gene
mm9_v1_chr17_+_34066835_34066937	0.117467	CACAGUG	BC068121|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2	NM_009059|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2	AK144440|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2	U54639|Rgl2|19732|ral guanine nucleotide dissociation stimulator-like 2
mm9_v1_chr12_-_51750204_51750242	0.116639	CACAGUG	NM_008858|Prkd1|18760|protein kinase D1
mm9_v1_chr6_-_72849854_72850037	0.11651	CACAGUG	NM_019715|Kcmf1|74287|potassium channel modulatory factor 1
mm9_v1_chr12_+_54349663_54349663	0.116459	CACAGUG	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr9_+_55174719_55174759	0.115257	CACAGUG	BC068128|AI118078|244886|expressed sequence AI118078	AK036040|AI118078|244886|expressed sequence AI118078	NM_172923|AI118078|244886|expressed sequence AI118078
mm9_v1_chr5_-_44617844_44617920	0.110633	CACAGUG	NM_173764|Tapt1|231225|transmembrane anterior posterior transformation 1
mm9_v1_chr6_-_72566691_72566744	0.110098	CACAGUG	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr2_-_33286793_33286890	0.109536	CACAGUG	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr1_-_163806710_163806814	0.108905	CACAGUG	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr17_+_75578120_75578285	0.10871	CACAGUG	AK036047|Ltbp1|268977|latent transforming growth factor beta binding protein 1	NM_206958|Ltbp1|268977|latent transforming growth factor beta binding protein 1	AF280604|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr19_+_10257363_10257524	0.107948	CACAGUG	NM_146094|Fads1|76267|fatty acid desaturase 1	BC026831|Fads1|76267|fatty acid desaturase 1	AK154367|Fads1|76267|fatty acid desaturase 1	BC022139|Fads1|76267|fatty acid desaturase 1	BC026848|Fads1|76267|fatty acid desaturase 1	AB072976|Fads1|76267|fatty acid desaturase 1	AK080706|Fads1|76267|fatty acid desaturase 1	AF061504|Fads1|76267|fatty acid desaturase 1	AK083959|Fads1|76267|fatty acid desaturase 1	BC063053|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr12_+_70473032_70473193	0.100618	CACAGUG	BC083112|Arf6|11845|ADP-ribosylation factor 6	NM_007481|Arf6|11845|ADP-ribosylation factor 6	AK156960|Arf6|11845|ADP-ribosylation factor 6	BC003478|Arf6|11845|ADP-ribosylation factor 6	D87903|Arf6|11845|ADP-ribosylation factor 6
mm9_v1_chr1_-_168339909_168339980	0.0972385	CACAGUG	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr11_-_5662259_5662400	0.0951661	CACAGUG	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr7_-_87550315_87550316	0.0950317	CACAGUG	AK020294|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_001081454|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr5_+_75548309_75548318	0.0926454	CACAGUG	NM_011058|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK081664|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr13_-_115178227_115178301	0.0921869	CACAGUG	AF124785|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020552|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	BC004618|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK011124|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020108|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	NM_010887|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr6_-_92484838_92484854	0.0906782	CACAGUG	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr2_-_134380065_134380100	0.0887685	CACAGUG	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr16_-_4789869_4789937	0.0882183	CACAGUG	AK017480|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK005157|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	BC004063|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK149939|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK150219|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK051560|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	AK031705|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene	NM_025670|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr1_+_92949986_92950162	0.0868121	CACAGUG	AK077637|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_001111311|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	NM_008515|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK134120|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK133661|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AF045573|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144955|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC144956|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	BC145642|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr11_-_113545329_113545497	0.0863651	CACAGUG	AK009763|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159228|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK017659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK087540|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK028386|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	NM_138598|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed
mm9_v1_chr19_+_21727795_21727859	0.0857277	CACAGUG	NM_146096|Fam108b|226016|family with sequence similarity 108, member B	AK017641|Fam108b|226016|family with sequence similarity 108, member B
mm9_v1_chr19_-_55173908_55173946	0.0854572	CACAGUG	BC019201|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	NM_008149|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr4_-_44181148_44181210	0.0851148	CACAGUG	AK044324|Rnf38|73469|ring finger protein 38	NM_001038993|Rnf38|73469|ring finger protein 38	AK147608|Rnf38|73469|ring finger protein 38
mm9_v1_chr5_+_34185760_34185844	0.0838941	CACAGUG	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr17_-_48061577_48061752	0.0836652	CACAGUG	BC057110|Foxp4|74123|forkhead box P4	NM_001110824|Foxp4|74123|forkhead box P4	NM_001110825|Foxp4|74123|forkhead box P4	NM_028767|Foxp4|74123|forkhead box P4
mm9_v1_chrX_+_82819294_82819360	0.0835009	CACAGUG	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr11_+_98724908_98724950	0.083075	CACAGUG	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr13_-_100874021_100874024	0.0744954	CACAGUG	AK045292|Bdp1|544971|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	NM_001081061|Bdp1|544971|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
mm9_v1_chr2_+_173902521_173902654	0.0728235	CACAGUG	AK078110|Stx16|228960|syntaxin 16	NM_001102423|Stx16|228960|syntaxin 16	NM_001102424|Stx16|228960|syntaxin 16	NM_001102425|Stx16|228960|syntaxin 16	NM_172675|Stx16|228960|syntaxin 16	BC094436|Stx16|228960|syntaxin 16	BC095989|Stx16|228960|syntaxin 16	BC138544|Stx16|228960|syntaxin 16
mm9_v1_chr15_-_103070227_103070257	0.072449	CACAGUG	BC004707|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)	NM_001076789|Cbx5|12419|chromobox homolog 5 (Drosophila HP1a)
mm9_v1_chr2_-_85036855_85036855	0.0722891	CACAGUG	AK134968|Lrrc55|241528|leucine rich repeat containing 55	BC141221|Lrrc55|241528|leucine rich repeat containing 55	NM_001033346|Lrrc55|241528|leucine rich repeat containing 55
mm9_v1_chr19_+_26822892_26822948	0.0703889	CACAGUG	NM_026003|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	AK011935|Smarca2|67155|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm9_v1_chr2_+_4322020_4322021	0.0699019	CACAGUG	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr6_-_28371572_28371734	0.0691354	CACAGUG	BC066807|Gcc1|74375|golgi coiled coil 1	AK032253|Gcc1|74375|golgi coiled coil 1	NM_028900|Gcc1|74375|golgi coiled coil 1
mm9_v1_chr9_+_56842653_56842808	0.065279	CACAGUG	BC053017|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	NM_019651|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chr17_+_43938789_43938843	0.0618866	CACAGUG	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr5_-_143579060_143579087	0.0612095	CACAGUG	BC049818|Tnrc18|231861|trinucleotide repeat containing 18	NM_001122730|Tnrc18|231861|trinucleotide repeat containing 18	NM_178242|Tnrc18|231861|trinucleotide repeat containing 18
mm9_v1_chr12_-_70994089_70994191	0.0598717	CACAGUG	BC048173|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	AK045031|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	AK053775|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	NM_201519|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5
mm9_v1_chr6_-_38204008_38204008	0.059819	CACAGUG	NM_194061|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr1_-_133423902_133423973	0.0590731	CACAGUG	AK143649|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	NM_001081011|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr4_+_59202363_59202463	0.0576906	CACAGUG	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr11_-_86358252_86358308	0.0569803	CACAGUG	BC038491|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	BC071244|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK032724|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK085687|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK135716|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK163258|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_001114334|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_028259|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr14_-_69903072_69903169	0.0550233	CACAGUG	AF288621|Slc25a37|67712|solute carrier family 25, member 37	AF361699|Slc25a37|67712|solute carrier family 25, member 37	AK050414|Slc25a37|67712|solute carrier family 25, member 37	NM_026331|Slc25a37|67712|solute carrier family 25, member 37	AK006155|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr1_-_122167658_122167658	0.0506782	CACAGUG	AK167028|Steap3|68428|STEAP family member 3	NM_001085409|Steap3|68428|STEAP family member 3
mm9_v1_chr10_-_80134720_80134753	0.0498849	CACAGUG	BC010256|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	NM_021462|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	Y11092|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr1_-_14299936_14300280	0.0493925	CACAGUG	BC066860|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK045320|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK042412|Eya1|14048|eyes absent 1 homolog (Drosophila)	BC060260|Eya1|14048|eyes absent 1 homolog (Drosophila)	NM_010164|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK153788|Eya1|14048|eyes absent 1 homolog (Drosophila)
mm9_v1_chr9_+_58671214_58671318	0.0470629	CACAGUG	BC158106|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4	BC158108|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4	NM_001081192|Hcn4|330953|hyperpolarization-activated, cyclic nucleotide-gated K+ 4
mm9_v1_chr7_-_36539369_36539472	0.046532	CACAGUG	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr2_+_17976897_17976897	0.0454443	CACAGUG	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr3_-_90269648_90269831	0.0440483	CACAGUG	BC139767|Npr1|18160|natriuretic peptide receptor 1	BC110659|Npr1|18160|natriuretic peptide receptor 1	NM_008727|Npr1|18160|natriuretic peptide receptor 1
mm9_v1_chr8_-_26311823_26311983	0.0414181	CACAGUG	BC125389|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	BC145709|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK037910|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK138513|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK046384|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177412|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177413|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_177089|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_199323|Tacc1|320165|transforming, acidic coiled-coil containing protein 1
mm9_v1_chr16_-_92697567_92697590	0.035587	CACAGUG	AK155262|Runx1|12394|runt related transcription factor 1	D26532|Runx1|12394|runt related transcription factor 1	NM_001111023|Runx1|12394|runt related transcription factor 1	NM_009821|Runx1|12394|runt related transcription factor 1
mm9_v1_chr7_+_130114059_130114440	0.033933	CACAGUG	NM_011247|Rbbp6|19647|retinoblastoma binding protein 6	NM_175023|Rbbp6|19647|retinoblastoma binding protein 6	AK081261|Rbbp6|19647|retinoblastoma binding protein 6	AK045635|Rbbp6|19647|retinoblastoma binding protein 6	BC025874|Rbbp6|19647|retinoblastoma binding protein 6
mm9_v1_chr6_-_126595818_126595818	0.0334802	CACAGUG	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr10_+_52137324_52137453	0.0331452	CACAGUG	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr18_-_55149819_55149833	0.0323492	CACAGUG	AK051334|Zfp608|269023|zinc finger protein 608	NM_175751|Zfp608|269023|zinc finger protein 608
mm9_v1_chr17_+_28046196_28046431	0.031418	CACAGUG	BC050847|Anks1|224650|ankyrin repeat and SAM domain containing 1	NM_181413|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK129094|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK147273|Anks1|224650|ankyrin repeat and SAM domain containing 1
mm9_v1_chr5_+_77403725_77403746	0.0275697	CACAGUG	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr3_-_82707880_82707898	0.0264189	CACAGUG	AF255061|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	AK004953|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	NM_023624|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
mm9_v1_chr13_-_55671276_55671335	0.0245919	CACAGUG	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr4_-_129301106_129301154	0.0223381	CACAGUG	AK003287|Ccdc28b|66264|coiled coil domain containing 28B	AK028262|Ccdc28b|66264|coiled coil domain containing 28B	BC028873|Ccdc28b|66264|coiled coil domain containing 28B	NM_025455|Ccdc28b|66264|coiled coil domain containing 28B	AK158016|Ccdc28b|66264|coiled coil domain containing 28B
mm9_v1_chr15_-_79518160_79518352	0.0176736	CACAGUG	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr8_+_24168730_24168785	0.0131068	CACAGUG	AK147483|Ank1|11733|ankyrin 1, erythroid	NM_031158|Ank1|11733|ankyrin 1, erythroid	X69063|Ank1|11733|ankyrin 1, erythroid	AK147597|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr11_+_6446883_6447007	0.0108316	CACAGUG	NM_001190343|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	NM_146014|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	AK155145|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	BC029157|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	AY442689|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)
mm9_v1_chr14_-_124591742_124591767	0.0085898	CACAGUG	U66204|Fgf14|14169|fibroblast growth factor 14	NM_010201|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr12_+_4599810_4599868	0.0082882	CACAGUG	AK034367|Itsn2|20403|intersectin 2	NM_001198968|Itsn2|20403|intersectin 2	NM_001198969|Itsn2|20403|intersectin 2	NM_011365|Itsn2|20403|intersectin 2	BC138262|Itsn2|20403|intersectin 2	BC171950|Itsn2|20403|intersectin 2	AK163807|Itsn2|20403|intersectin 2	AK042449|Itsn2|20403|intersectin 2	AK029325|Itsn2|20403|intersectin 2
mm9_v1_chr12_-_81213930_81214002	0.00791189	CACAGUG	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr18_+_31919533_31919621	0.00541291	CACAGUG	BC056948|Ammecr1l|225339|AMME chromosomal region gene 1-like	NM_153515|Ammecr1l|225339|AMME chromosomal region gene 1-like	AK151257|Ammecr1l|225339|AMME chromosomal region gene 1-like
mm9_v1_chr10_+_59809598_59809683	0.0026725	CACAGUG	NM_001159572|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	NM_028732|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK079734|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK170059|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK032383|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK159086|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK159864|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK163118|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK170419|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK171045|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK033393|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK030479|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK014600|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK131118|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	BC003967|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene
mm9_v1_chr11_-_66339627_66339627	0.0023922	CACAGUG	AK147504|Shisa6|380702|shisa homolog 6 (Xenopus laevis)	NM_001034874|Shisa6|380702|shisa homolog 6 (Xenopus laevis)
mm9_v1_chr1_+_70772288_70772496	0.00177777	CACAGUG	BC094541|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	NM_177164|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK083856|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	BC064448|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK080585|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like
mm9_v1_chr2_+_163820920_163821078	0.000656881	CACAGUG	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr11_+_60591019_60591051	0.000540612	CACAGUG	NM_001085440|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	NM_175491|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK052754|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK164045|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK145010|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	AK083739|Smcr8|237782|Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
mm9_v1_chr3_-_104024291_104024328	0.000538686	CACAGUG	AK018328|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_001159354|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_133853|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm9_v1_chr11_+_80022524_80022572	0.000414263	CACAGUG	AK147801|Rhot1|59040|ras homolog gene family, member T1	AK167502|Rhot1|59040|ras homolog gene family, member T1	NM_001163354|Rhot1|59040|ras homolog gene family, member T1	NM_001163355|Rhot1|59040|ras homolog gene family, member T1	NM_021536|Rhot1|59040|ras homolog gene family, member T1
