mm9_v1_chr2_+_25036276_25036300	0.845673	CAGUGCA	AY046077|Nrarp|67122|Notch-regulated ankyrin repeat protein	NM_025980|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC020293|Nrarp|67122|Notch-regulated ankyrin repeat protein	BC048088|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr2_-_160192799_160192833	0.614737	CAGUGCA	AK132425|Mafb|16658|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	NM_010658|Mafb|16658|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	AK143209|Mafb|16658|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm9_v1_chr2_+_131012677_131012814	0.537913	CAGUGCA	BC048164|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	NM_001111075|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	NM_023117|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK153903|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK043730|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK004836|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	AK157397|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	BC057568|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)	S93521|Cdc25b|12531|cell division cycle 25 homolog B (S. pombe)
mm9_v1_chr4_-_109960078_109960115	0.501649	CAGUGCA	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr9_-_36575157_36575263	0.489073	CAGUGCA	AK153840|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK160607|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	NM_008408|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	BC085313|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK077877|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK169669|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK189214|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	BC037612|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK081427|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK087470|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK129027|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK160037|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AX799090|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	L34260|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK150640|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK152242|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK168505|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK168937|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK081547|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK151541|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK151791|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK030363|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	AK153886|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr15_-_73015345_73015397	0.430003	CAGUGCA	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr13_-_99660903_99660996	0.415994	CAGUGCA	BC055372|Tnpo1|238799|transportin 1	AK167049|Tnpo1|238799|transportin 1	AK045132|Tnpo1|238799|transportin 1	NM_001048267|Tnpo1|238799|transportin 1
mm9_v1_chr2_+_173935819_173935978	0.407906	CAGUGCA	AK150313|Npepl1|228961|aminopeptidase-like 1	AK170509|Npepl1|228961|aminopeptidase-like 1	NM_213733|Npepl1|228961|aminopeptidase-like 1	AK156136|Npepl1|228961|aminopeptidase-like 1	BC069933|Npepl1|228961|aminopeptidase-like 1	AK144651|Npepl1|228961|aminopeptidase-like 1	BC080707|Npepl1|228961|aminopeptidase-like 1
mm9_v1_chr17_-_78817348_78817472	0.405249	CAGUGCA	BC064130|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK033547|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK165595|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	BC096619|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AY382580|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	NM_199448|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK159545|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK157221|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	AK150241|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)	BC052366|Fez2|225020|fasciculation and elongation protein zeta 2 (zygin II)
mm9_v1_chr2_-_59963796_59963833	0.395211	CAGUGCA	NM_001001182|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK147737|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr2_-_119303348_119303443	0.392795	CAGUGCA	BC061495|Ino80|68142|INO80 homolog (S. cerevisiae)	AK040612|Ino80|68142|INO80 homolog (S. cerevisiae)	NM_026574|Ino80|68142|INO80 homolog (S. cerevisiae)
mm9_v1_chr7_+_119166928_119167032	0.383417	CAGUGCA	AK151051|Usp47|74996|ubiquitin specific peptidase 47	NM_133758|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chr1_+_6720087_6720131	0.377059	CAGUGCA	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr16_+_72663393_72663448	0.37607	CAGUGCA	AK138485|Robo1|19876|roundabout homolog 1 (Drosophila)	AK143001|Robo1|19876|roundabout homolog 1 (Drosophila)	NM_019413|Robo1|19876|roundabout homolog 1 (Drosophila)	AK032752|Robo1|19876|roundabout homolog 1 (Drosophila)	AK142047|Robo1|19876|roundabout homolog 1 (Drosophila)
mm9_v1_chr11_-_106021399_106021524	0.366714	CAGUGCA	BC068130|Limd2|67803|LIM domain containing 2	AK049809|Limd2|67803|LIM domain containing 2	AK167349|Limd2|67803|LIM domain containing 2	AK169829|Limd2|67803|LIM domain containing 2	AK012581|Limd2|67803|LIM domain containing 2	AK032430|Limd2|67803|LIM domain containing 2	AK040486|Limd2|67803|LIM domain containing 2	NM_172397|Limd2|67803|LIM domain containing 2
mm9_v1_chr3_-_36470904_36470919	0.365138	CAGUGCA	NM_009828|Ccna2|12428|cyclin A2	AK044924|Ccna2|12428|cyclin A2
mm9_v1_chr11_-_84953442_84953491	0.355963	CAGUGCA	AK170234|Usp32|237898|ubiquitin specific peptidase 32	AK148221|Usp32|237898|ubiquitin specific peptidase 32	NM_001029934|Usp32|237898|ubiquitin specific peptidase 32
mm9_v1_chr11_-_102417457_102417523	0.345065	CAGUGCA	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr17_+_15841889_15842002	0.344561	CAGUGCA	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr9_+_70526702_70526924	0.34117	CAGUGCA	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr6_-_92133945_92134035	0.33666	CAGUGCA	AK131114|Mrps25|64658|mitochondrial ribosomal protein S25	AK013196|Mrps25|64658|mitochondrial ribosomal protein S25	AK004037|Mrps25|64658|mitochondrial ribosomal protein S25	BC022953|Mrps25|64658|mitochondrial ribosomal protein S25	NM_025578|Mrps25|64658|mitochondrial ribosomal protein S25
mm9_v1_chr18_+_69505374_69505487	0.334504	CAGUGCA	NM_001083967|Tcf4|21413|transcription factor 4	AK081012|Tcf4|21413|transcription factor 4	AK145285|Tcf4|21413|transcription factor 4	AK028748|Tcf4|21413|transcription factor 4	S75870|Tcf4|21413|transcription factor 4
mm9_v1_chr13_+_113254277_113254381	0.331828	CAGUGCA	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chr11_-_76660476_76660569	0.329403	CAGUGCA	AK142583|Cpd|12874|carboxypeptidase D	AK134907|Cpd|12874|carboxypeptidase D	AK137737|Cpd|12874|carboxypeptidase D	D85391|Cpd|12874|carboxypeptidase D	NM_007754|Cpd|12874|carboxypeptidase D
mm9_v1_chr3_+_102862151_102862295	0.322692	CAGUGCA	X13664|Nras|18176|neuroblastoma ras oncogene	NM_010937|Nras|18176|neuroblastoma ras oncogene	AK011704|Nras|18176|neuroblastoma ras oncogene	AK165960|Nras|18176|neuroblastoma ras oncogene	AK150357|Nras|18176|neuroblastoma ras oncogene	BC058755|Nras|18176|neuroblastoma ras oncogene	BC014704|Nras|18176|neuroblastoma ras oncogene	BC051443|Nras|18176|neuroblastoma ras oncogene
mm9_v1_chr3_-_50247306_50247534	0.31695	CAGUGCA	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr10_+_110182506_110182701	0.31686	CAGUGCA	AK051521|E2f7|52679|E2F transcription factor 7	NM_178609|E2f7|52679|E2F transcription factor 7	AK031078|E2f7|52679|E2F transcription factor 7	AK041481|E2f7|52679|E2F transcription factor 7	AY463359|E2f7|52679|E2F transcription factor 7	AK143686|E2f7|52679|E2F transcription factor 7	BC145429|E2f7|52679|E2F transcription factor 7	BC150772|E2f7|52679|E2F transcription factor 7	AK045040|E2f7|52679|E2F transcription factor 7
mm9_v1_chr9_+_74885420_74885510	0.311542	CAGUGCA	NM_001142655|Arpp19|59046|cAMP-regulated phosphoprotein 19	AK076052|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr7_+_71432538_71432641	0.308503	CAGUGCA	AK088715|Mtmr10|233315|myotubularin related protein 10	NM_172742|Mtmr10|233315|myotubularin related protein 10	BC041672|Mtmr10|233315|myotubularin related protein 10
mm9_v1_chr4_+_140257340_140257464	0.304638	CAGUGCA	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr8_+_12757011_12757296	0.304623	CAGUGCA	AK147497|Atp11a|50770|ATPase, class VI, type 11A	NM_015804|Atp11a|50770|ATPase, class VI, type 11A	AF156551|Atp11a|50770|ATPase, class VI, type 11A	BC145399|Atp11a|50770|ATPase, class VI, type 11A	BC145400|Atp11a|50770|ATPase, class VI, type 11A	BC138715|Atp11a|50770|ATPase, class VI, type 11A
mm9_v1_chr1_+_12682510_12682540	0.301078	CAGUGCA	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr13_-_99696254_99696340	0.297714	CAGUGCA	AK030580|Tnpo1|238799|transportin 1	AK087194|Tnpo1|238799|transportin 1	AK037001|Tnpo1|238799|transportin 1	AK029953|Tnpo1|238799|transportin 1	NM_178716|Tnpo1|238799|transportin 1
mm9_v1_chr9_+_64949242_64949341	0.291375	CAGUGCA	AB052620|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AB052621|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AK082162|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	NM_020043|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AK079073|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AF176694|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	AK143256|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	BC126879|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4	BC126880|Igdcc4|56741|immunoglobulin superfamily, DCC subclass, member 4
mm9_v1_chr6_-_144157971_144158077	0.291325	CAGUGCA	BC110478|Sox5|20678|SRY-box containing gene 5	AK132307|Sox5|20678|SRY-box containing gene 5	AB006330|Sox5|20678|SRY-box containing gene 5	AJ010604|Sox5|20678|SRY-box containing gene 5	NM_001113559|Sox5|20678|SRY-box containing gene 5	NM_011444|Sox5|20678|SRY-box containing gene 5
mm9_v1_chr15_+_76181718_76181819	0.283041	CAGUGCA	NM_001164607|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_001164608|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_026859|Maf1|68877|MAF1 homolog (S. cerevisiae)	BC016260|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK154047|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK042913|Maf1|68877|MAF1 homolog (S. cerevisiae)
mm9_v1_chr9_+_44412931_44412987	0.2829	CAGUGCA	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr11_-_113545329_113545497	0.282584	CAGUGCA	AK009763|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159228|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK159659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK017659|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK087540|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	AK028386|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed	NM_138598|D11Wsu99e|28081|DNA segment, Chr 11, Wayne State University 99, expressed
mm9_v1_chr4_-_140695648_140695720	0.281023	CAGUGCA	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr9_+_62525612_62525700	0.280529	CAGUGCA	NM_176922|Itga11|319480|integrin alpha 11	AK054303|Itga11|319480|integrin alpha 11	AY124460|Itga11|319480|integrin alpha 11	BC058716|Itga11|319480|integrin alpha 11
mm9_v1_chr7_-_125273061_125273141	0.27597	CAGUGCA	BC046792|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF133669|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF223953|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	BC010196|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK152885|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK090001|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK150042|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK151272|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK151507|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK152565|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK163655|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167912|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK168245|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK169191|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK150507|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK154644|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167872|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK168172|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK154355|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF172088|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167888|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	NM_019419|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr4_+_118781336_118781380	0.275821	CAGUGCA	NM_011400|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	M23384|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1	BC055340|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr11_-_50139023_50139176	0.269948	CAGUGCA	BC012408|Canx|12330|calnexin	BC040244|Canx|12330|calnexin	AK028279|Canx|12330|calnexin	AK165508|Canx|12330|calnexin	AK084175|Canx|12330|calnexin	AK171868|Canx|12330|calnexin	AK159298|Canx|12330|calnexin	AK166649|Canx|12330|calnexin	NM_001110499|Canx|12330|calnexin	NM_001110500|Canx|12330|calnexin	NM_007597|Canx|12330|calnexin
mm9_v1_chr10_+_40069113_40069226	0.266814	CAGUGCA	AK122421|Cdk19|78334|cyclin-dependent kinase 19	NM_001168304|Cdk19|78334|cyclin-dependent kinase 19	NM_198164|Cdk19|78334|cyclin-dependent kinase 19	AK053651|Cdk19|78334|cyclin-dependent kinase 19	BC137614|Cdk19|78334|cyclin-dependent kinase 19	BC144782|Cdk19|78334|cyclin-dependent kinase 19	BC080280|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr11_-_20731016_20731238	0.266145	CAGUGCA	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr10_-_118677059_118677116	0.260614	CAGUGCA	AK129225|Cand1|71902|cullin associated and neddylation disassociated 1	AK144869|Cand1|71902|cullin associated and neddylation disassociated 1	AK158080|Cand1|71902|cullin associated and neddylation disassociated 1	NM_027994|Cand1|71902|cullin associated and neddylation disassociated 1
mm9_v1_chr12_-_105990160_105990320	0.259908	CAGUGCA	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr6_+_113187821_113187914	0.257657	CAGUGCA	NM_026849|Mtmr14|97287|myotubularin related protein 14	AK161445|Mtmr14|97287|myotubularin related protein 14	BC018294|Mtmr14|97287|myotubularin related protein 14	AK034867|Mtmr14|97287|myotubularin related protein 14
mm9_v1_chr8_-_11312729_11312825	0.25623	CAGUGCA	J04694|Col4a1|12826|collagen, type IV, alpha 1	AK142097|Col4a1|12826|collagen, type IV, alpha 1	J03758|Col4a1|12826|collagen, type IV, alpha 1	AK147284|Col4a1|12826|collagen, type IV, alpha 1	AK147355|Col4a1|12826|collagen, type IV, alpha 1	X06777|Col4a1|12826|collagen, type IV, alpha 1	AK146487|Col4a1|12826|collagen, type IV, alpha 1	AK159130|Col4a1|12826|collagen, type IV, alpha 1	AK147661|Col4a1|12826|collagen, type IV, alpha 1	NM_009931|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr18_+_73732352_73732560	0.255325	CAGUGCA	NM_001039214|Mex3c|240396|mex3 homolog C (C. elegans)	AK133686|Mex3c|240396|mex3 homolog C (C. elegans)
mm9_v1_chr4_-_136604609_136604715	0.249991	CAGUGCA	BC059177|Zbtb40|230848|zinc finger and BTB domain containing 40	NM_198248|Zbtb40|230848|zinc finger and BTB domain containing 40	AK036584|Zbtb40|230848|zinc finger and BTB domain containing 40
mm9_v1_chr2_-_101637773_101637865	0.246734	CAGUGCA	BC048394|Prr5l|72446|proline rich 5 like	AK030499|Prr5l|72446|proline rich 5 like	NM_001083810|Prr5l|72446|proline rich 5 like	NM_175181|Prr5l|72446|proline rich 5 like	AK145981|Prr5l|72446|proline rich 5 like
mm9_v1_chr4_-_110024513_110024515	0.246059	CAGUGCA	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr14_-_46008425_46008617	0.245709	CAGUGCA	BC092047|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	BC031116|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK018499|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK050266|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AJ001006|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	NM_019425|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007722|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK167870|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK168074|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007647|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK008566|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK002466|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK028693|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007764|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK011098|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1
mm9_v1_chr2_+_156665812_156665874	0.245439	CAGUGCA	AK029490|Tgif2|228839|TGFB-induced factor homeobox 2	NM_173396|Tgif2|228839|TGFB-induced factor homeobox 2	BC138706|Tgif2|228839|TGFB-induced factor homeobox 2	BC138705|Tgif2|228839|TGFB-induced factor homeobox 2	AK157623|Tgif2|228839|TGFB-induced factor homeobox 2	AK017884|Tgif2|228839|TGFB-induced factor homeobox 2
mm9_v1_chr11_-_88725877_88725929	0.245381	CAGUGCA	AK076216|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_001042541|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr11_+_69715343_69715451	0.24527	CAGUGCA	NM_001013414|Neurl4|216860|neuralized homolog 4 (Drosophila)	AK157107|Neurl4|216860|neuralized homolog 4 (Drosophila)
mm9_v1_chr12_-_80397239_80397289	0.243428	CAGUGCA	AK220333|Zfyve26|211978|zinc finger, FYVE domain containing 26	BC141359|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK132344|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK041668|Zfyve26|211978|zinc finger, FYVE domain containing 26	AK135518|Zfyve26|211978|zinc finger, FYVE domain containing 26	NM_001008550|Zfyve26|211978|zinc finger, FYVE domain containing 26
mm9_v1_chr5_-_124875921_124875965	0.243295	CAGUGCA	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr15_-_96291163_96291288	0.242822	CAGUGCA	AK129478|Scaf11|72193|SR-related CTD-associated factor 11	AK034674|Scaf11|72193|SR-related CTD-associated factor 11	BC058682|Scaf11|72193|SR-related CTD-associated factor 11	NM_028148|Scaf11|72193|SR-related CTD-associated factor 11
mm9_v1_chrX_-_153929935_153930011	0.228219	CAGUGCA	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr18_-_15562126_15562266	0.220979	CAGUGCA	AK044074|Aqp4|11829|aquaporin 4	BC024526|Aqp4|11829|aquaporin 4	NM_009700|Aqp4|11829|aquaporin 4	AF469168|Aqp4|11829|aquaporin 4
mm9_v1_chr11_+_74462965_74463046	0.218674	CAGUGCA	AK145708|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK157310|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154925|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	NM_001081158|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154146|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK036540|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK150045|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	BC072573|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene
mm9_v1_chr3_-_115417932_115417972	0.218015	CAGUGCA	AK004591|S1pr1|13609|sphingosine-1-phosphate receptor 1	NM_007901|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr3_+_40549475_40549540	0.217723	CAGUGCA	BC012712|Hspa4l|18415|heat shock protein 4 like	AK144225|Hspa4l|18415|heat shock protein 4 like	AK032066|Hspa4l|18415|heat shock protein 4 like	BC110662|Hspa4l|18415|heat shock protein 4 like	BC057002|Hspa4l|18415|heat shock protein 4 like	NM_011020|Hspa4l|18415|heat shock protein 4 like	D49482|Hspa4l|18415|heat shock protein 4 like
mm9_v1_chr10_-_13043959_13044096	0.216274	CAGUGCA	BC130264|Phactr2|215789|phosphatase and actin regulator 2	AK142930|Phactr2|215789|phosphatase and actin regulator 2	NM_001033257|Phactr2|215789|phosphatase and actin regulator 2	NM_001195096|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr1_-_183772442_183772553	0.215844	CAGUGCA	BC021516|Lbr|98386|lamin B receptor	AK166850|Lbr|98386|lamin B receptor	AK167157|Lbr|98386|lamin B receptor	AK033459|Lbr|98386|lamin B receptor	AK088179|Lbr|98386|lamin B receptor	AK030606|Lbr|98386|lamin B receptor	BC042522|Lbr|98386|lamin B receptor	AK151798|Lbr|98386|lamin B receptor	AK161762|Lbr|98386|lamin B receptor	AK028426|Lbr|98386|lamin B receptor	NM_133815|Lbr|98386|lamin B receptor
mm9_v1_chr7_+_127821093_127821157	0.215566	CAGUGCA	NM_001164580|BC030336|233812|cDNA sequence BC030336
mm9_v1_chr10_-_128133261_128133372	0.215432	CAGUGCA	AK144551|Rab5b|19344|RAB5B, member RAS oncogene family	AK083034|Rab5b|19344|RAB5B, member RAS oncogene family	AK081251|Rab5b|19344|RAB5B, member RAS oncogene family	NM_177411|Rab5b|19344|RAB5B, member RAS oncogene family
mm9_v1_chr15_+_5093855_5093914	0.208255	CAGUGCA	NM_001013367|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	AK160612|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	AK147811|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	BC086695|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit	AY885266|Prkaa1|105787|protein kinase, AMP-activated, alpha 1 catalytic subunit
mm9_v1_chr3_-_84386546_84386619	0.205543	CAGUGCA	NM_001081093|Arfip1|99889|ADP-ribosylation factor interacting protein 1
mm9_v1_chr6_-_92431385_92431385	0.204828	CAGUGCA	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr2_+_59450080_59450110	0.197216	CAGUGCA	NM_198294|Tanc1|66860|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm9_v1_chr7_-_116895708_116895795	0.196943	CAGUGCA	AK009147|Tmem9b|56786|TMEM9 domain family, member B	AK077253|Tmem9b|56786|TMEM9 domain family, member B	AK007430|Tmem9b|56786|TMEM9 domain family, member B	BC002208|Tmem9b|56786|TMEM9 domain family, member B	NM_020050|Tmem9b|56786|TMEM9 domain family, member B	AK147127|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chr4_+_109015660_109015680	0.193837	CAGUGCA	NM_001159964|Eps15|13858|epidermal growth factor receptor pathway substrate 15	AK083176|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr19_+_37000568_37000661	0.193138	CAGUGCA	NM_001080706|Btaf1|107182|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm9_v1_chr18_+_44540137_44540241	0.190914	CAGUGCA	AK153105|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	NM_027490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK008609|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK017809|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK166560|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK010490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK152160|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153264|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153310|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)
mm9_v1_chr7_-_127039189_127039258	0.185917	CAGUGCA	BC030335|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	AK155160|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	NM_001163703|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm9_v1_chr4_+_150229178_150229242	0.185688	CAGUGCA	AK004851|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK166791|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK167359|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK168797|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK139780|Errfi1|74155|ERBB receptor feedback inhibitor 1	BC005546|Errfi1|74155|ERBB receptor feedback inhibitor 1	NM_133753|Errfi1|74155|ERBB receptor feedback inhibitor 1	AK167156|Errfi1|74155|ERBB receptor feedback inhibitor 1
mm9_v1_chr3_-_126701367_126701380	0.184532	CAGUGCA	AK032060|Ank2|109676|ankyrin 2, brain	NM_178655|Ank2|109676|ankyrin 2, brain
mm9_v1_chr5_-_51945054_51945159	0.183328	CAGUGCA	BC066868|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AB061324|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AF049330|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK143753|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	AK138668|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	NM_008904|Ppargc1a|19017|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm9_v1_chr7_+_133903118_133903185	0.180689	CAGUGCA	NM_011952|Mapk3|26417|mitogen-activated protein kinase 3	BC029712|Mapk3|26417|mitogen-activated protein kinase 3	Z14249|Mapk3|26417|mitogen-activated protein kinase 3
mm9_v1_chr10_+_17516024_17516131	0.178825	CAGUGCA	AK084639|Txlnb|378431|taxilin beta	NM_138628|Txlnb|378431|taxilin beta	AK084579|Txlnb|378431|taxilin beta	AK052324|Txlnb|378431|taxilin beta	AF422244|Txlnb|378431|taxilin beta	AF422245|Txlnb|378431|taxilin beta	AK137442|Txlnb|378431|taxilin beta	BC141023|Txlnb|378431|taxilin beta	AK085904|Txlnb|378431|taxilin beta
mm9_v1_chr3_+_87774988_87775050	0.176236	CAGUGCA	AK031207|Nes|18008|nestin	AK012622|Nes|18008|nestin	BC062893|Nes|18008|nestin	NM_016701|Nes|18008|nestin	BC060693|Nes|18008|nestin	AF076623|Nes|18008|nestin
mm9_v1_chrX_+_65931715_65931923	0.170792	CAGUGCA	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr3_-_157694667_157694727	0.170309	CAGUGCA	BC069945|Srsf11|69207|serine/arginine-rich splicing factor 11	BC021809|Srsf11|69207|serine/arginine-rich splicing factor 11	AK029394|Srsf11|69207|serine/arginine-rich splicing factor 11	BC002111|Srsf11|69207|serine/arginine-rich splicing factor 11	AK146719|Srsf11|69207|serine/arginine-rich splicing factor 11	AK002411|Srsf11|69207|serine/arginine-rich splicing factor 11	NM_001093753|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr13_+_49703402_49703439	0.16983	CAGUGCA	AK028300|Ogn|18295|osteoglycin	AK160760|Ogn|18295|osteoglycin	AK053650|Ogn|18295|osteoglycin	NM_008760|Ogn|18295|osteoglycin
mm9_v1_chrX_+_156146532_156146595	0.169443	CAGUGCA	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr17_-_31992708_31992780	0.168113	CAGUGCA	U11494|Sik1|17691|salt inducible kinase 1	AK141817|Sik1|17691|salt inducible kinase 1	NM_010831|Sik1|17691|salt inducible kinase 1	AK172427|Sik1|17691|salt inducible kinase 1
mm9_v1_chr6_-_39156706_39156787	0.167394	CAGUGCA	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr1_+_191552133_191552202	0.167303	CAGUGCA	AK037646|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	NM_008976|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK086524|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK028783|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14
mm9_v1_chr9_+_86916846_86916935	0.165919	CAGUGCA	AK090159|Cyb5r4|266690|cytochrome b5 reductase 4	NM_024195|Cyb5r4|266690|cytochrome b5 reductase 4	AK157312|Cyb5r4|266690|cytochrome b5 reductase 4	AK169937|Cyb5r4|266690|cytochrome b5 reductase 4	AK169995|Cyb5r4|266690|cytochrome b5 reductase 4	BC025438|Cyb5r4|266690|cytochrome b5 reductase 4	AK034878|Cyb5r4|266690|cytochrome b5 reductase 4	AK172252|Cyb5r4|266690|cytochrome b5 reductase 4
mm9_v1_chr4_-_91066674_91066674	0.156397	CAGUGCA	BC049125|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	BC058393|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207685|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr15_-_97835044_97835154	0.15584	CAGUGCA	BC052326|Col2a1|12824|collagen, type II, alpha 1	BC051383|Col2a1|12824|collagen, type II, alpha 1	AK132311|Col2a1|12824|collagen, type II, alpha 1	BC082331|Col2a1|12824|collagen, type II, alpha 1	AK053784|Col2a1|12824|collagen, type II, alpha 1	NM_001113515|Col2a1|12824|collagen, type II, alpha 1	NM_031163|Col2a1|12824|collagen, type II, alpha 1
mm9_v1_chr4_-_136512727_136512761	0.151853	CAGUGCA	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr5_-_115608153_115608220	0.150946	CAGUGCA	AK031525|Mlec|109154|malectin	AK075940|Mlec|109154|malectin	NM_175403|Mlec|109154|malectin
mm9_v1_chr9_+_21351307_21351499	0.147949	CAGUGCA	NM_021531|Carm1|59035|coactivator-associated arginine methyltransferase 1	NM_153141|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC036974|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158242|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC071267|Carm1|59035|coactivator-associated arginine methyltransferase 1	AF117887|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158757|Carm1|59035|coactivator-associated arginine methyltransferase 1
mm9_v1_chr1_-_16609325_16609423	0.146657	CAGUGCA	AK077997|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	BC020124|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK082233|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	NM_025773|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK042870|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK044463|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050679|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK015348|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK046086|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050923|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)
mm9_v1_chr7_-_108080671_108080707	0.143651	CAGUGCA	NM_001081116|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr3_+_96361879_96362304	0.141206	CAGUGCA	AK089304|Txnip|56338|thioredoxin interacting protein	AK089403|Txnip|56338|thioredoxin interacting protein	NM_001009935|Txnip|56338|thioredoxin interacting protein	NM_023719|Txnip|56338|thioredoxin interacting protein	AK004653|Txnip|56338|thioredoxin interacting protein	AK082476|Txnip|56338|thioredoxin interacting protein	AK088870|Txnip|56338|thioredoxin interacting protein	AK089351|Txnip|56338|thioredoxin interacting protein	AK155517|Txnip|56338|thioredoxin interacting protein	AK171205|Txnip|56338|thioredoxin interacting protein	AK171312|Txnip|56338|thioredoxin interacting protein	AK171425|Txnip|56338|thioredoxin interacting protein	AK171456|Txnip|56338|thioredoxin interacting protein	AK171464|Txnip|56338|thioredoxin interacting protein	AK171527|Txnip|56338|thioredoxin interacting protein	BC031850|Txnip|56338|thioredoxin interacting protein	BC011212|Txnip|56338|thioredoxin interacting protein	AK187108|Txnip|56338|thioredoxin interacting protein	AF173681|Txnip|56338|thioredoxin interacting protein	AF282826|Txnip|56338|thioredoxin interacting protein	AK192038|Txnip|56338|thioredoxin interacting protein	AK214578|Txnip|56338|thioredoxin interacting protein
mm9_v1_chr9_+_74885522_74885560	0.141049	CAGUGCA	BC040206|Arpp19|59046|cAMP-regulated phosphoprotein 19	NM_021548|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr4_+_148178500_148178594	0.137751	CAGUGCA	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr11_+_77845814_77845821	0.137117	CAGUGCA	NM_183286|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr8_+_82163574_82163602	0.134975	CAGUGCA	NM_001081164|Otud4|73945|OTU domain containing 4	BC138373|Otud4|73945|OTU domain containing 4	BC145259|Otud4|73945|OTU domain containing 4
mm9_v1_chr9_+_64808638_64808765	0.134284	CAGUGCA	NM_001077631|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK169772|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK035654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK041578|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK086850|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	BC024913|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK032095|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	NM_175153|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK050654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr15_-_103197178_103197295	0.134201	CAGUGCA	BC053431|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	NM_010577|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC050943|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)	BC059829|Itga5|16402|integrin alpha 5 (fibronectin receptor alpha)
mm9_v1_chr17_-_24388262_24388385	0.132679	CAGUGCA	BC021658|Ccnf|12449|cyclin F	Z47766|Ccnf|12449|cyclin F	U20612|Ccnf|12449|cyclin F	U20636|Ccnf|12449|cyclin F	AK085183|Ccnf|12449|cyclin F	AK030298|Ccnf|12449|cyclin F	AK031613|Ccnf|12449|cyclin F	AK032961|Ccnf|12449|cyclin F	AK162447|Ccnf|12449|cyclin F	AK169263|Ccnf|12449|cyclin F	AK082485|Ccnf|12449|cyclin F	AK159594|Ccnf|12449|cyclin F	NM_007634|Ccnf|12449|cyclin F
mm9_v1_chr16_-_85901362_85901374	0.132558	CAGUGCA	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr4_+_102791890_102792040	0.131577	CAGUGCA	AK143201|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK138876|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	NM_001039081|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK168693|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	BC108273|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AY769437|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis
mm9_v1_chr2_-_69424085_69424123	0.130945	CAGUGCA	AK049346|Lrp2|14725|low density lipoprotein receptor-related protein 2	AK084165|Lrp2|14725|low density lipoprotein receptor-related protein 2	AK165434|Lrp2|14725|low density lipoprotein receptor-related protein 2	NM_001081088|Lrp2|14725|low density lipoprotein receptor-related protein 2
mm9_v1_chr16_-_50432421_50432504	0.130943	CAGUGCA	AK044855|Bbx|70508|bobby sox homolog (Drosophila)	BC019456|Bbx|70508|bobby sox homolog (Drosophila)	BC066821|Bbx|70508|bobby sox homolog (Drosophila)	AF276951|Bbx|70508|bobby sox homolog (Drosophila)	BC064763|Bbx|70508|bobby sox homolog (Drosophila)	BC057869|Bbx|70508|bobby sox homolog (Drosophila)	AK157813|Bbx|70508|bobby sox homolog (Drosophila)	AK049516|Bbx|70508|bobby sox homolog (Drosophila)	AF454943|Bbx|70508|bobby sox homolog (Drosophila)	AK017487|Bbx|70508|bobby sox homolog (Drosophila)	AK029747|Bbx|70508|bobby sox homolog (Drosophila)	AK167724|Bbx|70508|bobby sox homolog (Drosophila)	NM_027444|Bbx|70508|bobby sox homolog (Drosophila)
mm9_v1_chr3_+_27081918_27081998	0.130183	CAGUGCA	AK128968|Nceh1|320024|arylacetamide deacetylase-like 1	AK038691|Nceh1|320024|arylacetamide deacetylase-like 1	AK045363|Nceh1|320024|arylacetamide deacetylase-like 1	AK085767|Nceh1|320024|arylacetamide deacetylase-like 1	NM_178772|Nceh1|320024|arylacetamide deacetylase-like 1	AK135837|Nceh1|320024|arylacetamide deacetylase-like 1	BC082569|Nceh1|320024|arylacetamide deacetylase-like 1	AK173158|Nceh1|320024|arylacetamide deacetylase-like 1	AK034339|Nceh1|320024|arylacetamide deacetylase-like 1
mm9_v1_chr15_+_80629020_80629144	0.129157	CAGUGCA	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chr2_-_25838722_25838801	0.127913	CAGUGCA	AK137097|Camsap1|227634|calmodulin regulated spectrin-associated protein 1	NM_001115076|Camsap1|227634|calmodulin regulated spectrin-associated protein 1
mm9_v1_chr11_-_54601163_54601250	0.127569	CAGUGCA	AK145931|Cdc42se2|72729|CDC42 small effector 2	AK160934|Cdc42se2|72729|CDC42 small effector 2	NM_178626|Cdc42se2|72729|CDC42 small effector 2
mm9_v1_chr6_+_97879810_97879849	0.122854	CAGUGCA	NM_001178049|Mitf|17342|microphthalmia-associated transcription factor	AK052895|Mitf|17342|microphthalmia-associated transcription factor	U19874|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr11_-_109334465_109334613	0.122771	CAGUGCA	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr11_+_120094240_120094260	0.122649	CAGUGCA	AK147250|Bahcc1|268515|BAH domain and coiled-coil containing 1	NM_198423|Bahcc1|268515|BAH domain and coiled-coil containing 1
mm9_v1_chr4_+_124479785_124479853	0.122547	CAGUGCA	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr2_-_125332107_125332185	0.121532	CAGUGCA	U22493|Fbn1|14118|fibrillin 1	AK080935|Fbn1|14118|fibrillin 1	NM_007993|Fbn1|14118|fibrillin 1
mm9_v1_chr2_+_25227840_25227897	0.120883	CAGUGCA	NM_001081085|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK154143|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	BC070477|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK008577|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK164615|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK166625|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene	AK077952|2010317E24Rik|72080|RIKEN cDNA 2010317E24 gene
mm9_v1_chr6_+_146673451_146673548	0.120779	CAGUGCA	NM_172734|Stk38l|232533|serine/threonine kinase 38 like	AK052288|Stk38l|232533|serine/threonine kinase 38 like	AK045971|Stk38l|232533|serine/threonine kinase 38 like	AY223819|Stk38l|232533|serine/threonine kinase 38 like
mm9_v1_chr11_+_43342241_43342329	0.120256	CAGUGCA	AK143205|Ccnjl|380694|cyclin J-like	NM_001045530|Ccnjl|380694|cyclin J-like
mm9_v1_chrX_-_45388010_45388030	0.120168	CAGUGCA	BC020015|Apln|30878|apelin	DQ832282|Apln|30878|apelin	NM_013912|Apln|30878|apelin	AK042076|Apln|30878|apelin
mm9_v1_chr2_-_151567023_151567053	0.119764	CAGUGCA	AK031363|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	AK083431|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	NM_212446|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	AK053924|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1
mm9_v1_chr7_-_112900699_112900744	0.118097	CAGUGCA	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr11_-_86922163_86922249	0.118061	CAGUGCA	AK040348|Prr11|270906|proline rich 11	AK047463|Prr11|270906|proline rich 11	AK083651|Prr11|270906|proline rich 11	NM_175563|Prr11|270906|proline rich 11
mm9_v1_chr7_+_119571219_119571592	0.118025	CAGUGCA	BC059236|Parva|57342|parvin, alpha	NM_020606|Parva|57342|parvin, alpha	AB045321|Parva|57342|parvin, alpha	AF237774|Parva|57342|parvin, alpha	AK162796|Parva|57342|parvin, alpha	AK076473|Parva|57342|parvin, alpha	AF264766|Parva|57342|parvin, alpha	BC039750|Parva|57342|parvin, alpha
mm9_v1_chrX_-_138825032_138825081	0.117751	CAGUGCA	AK054387|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_001033600|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_019477|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	NM_207625|Acsl4|50790|acyl-CoA synthetase long-chain family member 4
mm9_v1_chr4_-_126991216_126991282	0.117128	CAGUGCA	BC056613|Gja4|14612|gap junction protein, alpha 4	AF216832|Gja4|14612|gap junction protein, alpha 4	NM_008120|Gja4|14612|gap junction protein, alpha 4	AK143024|Gja4|14612|gap junction protein, alpha 4
mm9_v1_chr6_+_113257130_113257306	0.116002	CAGUGCA	AK043372|Brpf1|78783|bromodomain and PHD finger containing, 1	AK156375|Brpf1|78783|bromodomain and PHD finger containing, 1	BC046521|Brpf1|78783|bromodomain and PHD finger containing, 1	NM_030178|Brpf1|78783|bromodomain and PHD finger containing, 1	AK177868|Brpf1|78783|bromodomain and PHD finger containing, 1	BC138361|Brpf1|78783|bromodomain and PHD finger containing, 1	BC145256|Brpf1|78783|bromodomain and PHD finger containing, 1
mm9_v1_chr8_+_97876182_97876236	0.115915	CAGUGCA	BC047278|Mmp15|17388|matrix metallopeptidase 15	NM_008609|Mmp15|17388|matrix metallopeptidase 15
mm9_v1_chr10_+_87321789_87322010	0.113787	CAGUGCA	NM_001111275|Igf1|16000|insulin-like growth factor 1	NM_010512|Igf1|16000|insulin-like growth factor 1	AK050118|Igf1|16000|insulin-like growth factor 1	AK081019|Igf1|16000|insulin-like growth factor 1	AK165471|Igf1|16000|insulin-like growth factor 1	AY878192|Igf1|16000|insulin-like growth factor 1	AY878193|Igf1|16000|insulin-like growth factor 1	AK052033|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr11_-_95171521_95171560	0.110621	CAGUGCA	AK078483|Myst2|217127|MYST histone acetyltransferase 2	AK166915|Myst2|217127|MYST histone acetyltransferase 2	NM_001195003|Myst2|217127|MYST histone acetyltransferase 2	NM_001195004|Myst2|217127|MYST histone acetyltransferase 2	NM_177619|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr5_-_68238654_68238670	0.107302	CAGUGCA	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr11_+_52045464_52045596	0.107114	CAGUGCA	NM_011543|Skp1a|21402|S-phase kinase-associated protein 1A	AK078330|Skp1a|21402|S-phase kinase-associated protein 1A	AK002983|Skp1a|21402|S-phase kinase-associated protein 1A	AK012498|Skp1a|21402|S-phase kinase-associated protein 1A	AK014245|Skp1a|21402|S-phase kinase-associated protein 1A	AK027909|Skp1a|21402|S-phase kinase-associated protein 1A	AK088339|Skp1a|21402|S-phase kinase-associated protein 1A	AK160198|Skp1a|21402|S-phase kinase-associated protein 1A	AK158209|Skp1a|21402|S-phase kinase-associated protein 1A	AK166673|Skp1a|21402|S-phase kinase-associated protein 1A	AK152609|Skp1a|21402|S-phase kinase-associated protein 1A	Z47088|Skp1a|21402|S-phase kinase-associated protein 1A	BC002115|Skp1a|21402|S-phase kinase-associated protein 1A	AF083214|Skp1a|21402|S-phase kinase-associated protein 1A
mm9_v1_chr10_-_92185071_92185164	0.107078	CAGUGCA	BC066870|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	D10712|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	AK090040|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	AK048393|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	AK085355|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	BC052430|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	AK010591|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	NM_008682|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1	AK153746|Nedd1|17997|neural precursor cell expressed, developmentally down-regulated gene 1
mm9_v1_chrX_+_139115908_139116076	0.107052	CAGUGCA	AK166488|Tmem164|209497|transmembrane protein 164	BC056470|Tmem164|209497|transmembrane protein 164	NM_177592|Tmem164|209497|transmembrane protein 164
mm9_v1_chr8_-_48760457_48760542	0.107048	CAGUGCA	BC050003|Ing2|69260|inhibitor of growth family, member 2	BC096433|Ing2|69260|inhibitor of growth family, member 2	AK048800|Ing2|69260|inhibitor of growth family, member 2	AK083144|Ing2|69260|inhibitor of growth family, member 2	AK012716|Ing2|69260|inhibitor of growth family, member 2	NM_023503|Ing2|69260|inhibitor of growth family, member 2
mm9_v1_chr6_-_92656148_92656177	0.106613	CAGUGCA	BC099897|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001081146|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr15_+_98620287_98620435	0.106575	CAGUGCA	BC005449|Wnt1|22408|wingless-related MMTV integration site 1	NM_021279|Wnt1|22408|wingless-related MMTV integration site 1	AK141669|Wnt1|22408|wingless-related MMTV integration site 1	M11943|Wnt1|22408|wingless-related MMTV integration site 1
mm9_v1_chr11_+_78001871_78001989	0.105629	CAGUGCA	NM_001159482|Rab34|19376|RAB34, member of RAS oncogene family	AF327929|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr17_+_87153083_87153241	0.103257	CAGUGCA	AK136911|Epas1|13819|endothelial PAS domain protein 1	NM_010137|Epas1|13819|endothelial PAS domain protein 1	D89787|Epas1|13819|endothelial PAS domain protein 1
mm9_v1_chr9_-_82869081_82869124	0.103019	CAGUGCA	NM_001081216|Phip|83946|pleckstrin homology domain interacting protein	AK032797|Phip|83946|pleckstrin homology domain interacting protein
mm9_v1_chr14_-_58444986_58445016	0.102894	CAGUGCA	AK166171|F630043A04Rik|219114|RIKEN cDNA F630043A04 gene	BC117500|F630043A04Rik|219114|RIKEN cDNA F630043A04 gene	BC117501|F630043A04Rik|219114|RIKEN cDNA F630043A04 gene	AK089223|F630043A04Rik|219114|RIKEN cDNA F630043A04 gene	NM_198605|F630043A04Rik|219114|RIKEN cDNA F630043A04 gene	AK158142|F630043A04Rik|219114|RIKEN cDNA F630043A04 gene
mm9_v1_chr10_+_21015762_21015859	0.102	CAGUGCA	NM_001042593|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_001145209|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_019702|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK006626|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK146678|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK166140|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK168671|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK169281|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK012856|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK173091|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC085235|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC010251|Hbs1l|56422|Hbs1-like (S. cerevisiae)
mm9_v1_chr12_-_47919695_47919761	0.101934	CAGUGCA	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr11_-_62270815_62270835	0.100755	CAGUGCA	AK035813|Ncor1|20185|nuclear receptor co-repressor 1	AK077420|Ncor1|20185|nuclear receptor co-repressor 1	NM_011308|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr2_+_20441139_20441459	0.0999229	CAGUGCA	NM_001177630|Etl4|208618|enhancer trap locus 4	NM_001177631|Etl4|208618|enhancer trap locus 4	AK147510|Etl4|208618|enhancer trap locus 4	AB093289|Etl4|208618|enhancer trap locus 4	BC158051|Etl4|208618|enhancer trap locus 4	BC172143|Etl4|208618|enhancer trap locus 4	BC050016|Etl4|208618|enhancer trap locus 4	AK052733|Etl4|208618|enhancer trap locus 4
mm9_v1_chr4_+_126234210_126234268	0.0987742	CAGUGCA	AK053847|Clspn|269582|claspin homolog (Xenopus laevis)	NM_175554|Clspn|269582|claspin homolog (Xenopus laevis)	AK045076|Clspn|269582|claspin homolog (Xenopus laevis)	AK135394|Clspn|269582|claspin homolog (Xenopus laevis)	AK051966|Clspn|269582|claspin homolog (Xenopus laevis)	BC050848|Clspn|269582|claspin homolog (Xenopus laevis)
mm9_v1_chr4_-_144836658_144836801	0.0982107	CAGUGCA	X76401|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK170464|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	M60469|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	M59378|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	BC141405|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK155385|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK004752|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK004844|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK085490|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK140332|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK153301|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	NM_011610|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK156996|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b
mm9_v1_chr12_+_4599810_4599868	0.0980549	CAGUGCA	AK034367|Itsn2|20403|intersectin 2	NM_001198968|Itsn2|20403|intersectin 2	NM_001198969|Itsn2|20403|intersectin 2	NM_011365|Itsn2|20403|intersectin 2	BC138262|Itsn2|20403|intersectin 2	BC171950|Itsn2|20403|intersectin 2	AK163807|Itsn2|20403|intersectin 2	AK042449|Itsn2|20403|intersectin 2	AK029325|Itsn2|20403|intersectin 2
mm9_v1_chr5_+_144383313_144383461	0.0978509	CAGUGCA	NM_011182|Cyth3|19159|cytohesin 3	AK142407|Cyth3|19159|cytohesin 3	AK220565|Cyth3|19159|cytohesin 3	AK159229|Cyth3|19159|cytohesin 3	BC035296|Cyth3|19159|cytohesin 3	AK036191|Cyth3|19159|cytohesin 3	AK168566|Cyth3|19159|cytohesin 3	AF084221|Cyth3|19159|cytohesin 3	AB013470|Cyth3|19159|cytohesin 3
mm9_v1_chr19_-_5912757_5912865	0.0975626	CAGUGCA	U10435|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK215194|Dpf2|19708|D4, zinc and double PHD fingers family 2	BC012709|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK138047|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144848|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK019051|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144106|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK004812|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144954|Dpf2|19708|D4, zinc and double PHD fingers family 2	U43921|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK145851|Dpf2|19708|D4, zinc and double PHD fingers family 2	NM_011262|Dpf2|19708|D4, zinc and double PHD fingers family 2
mm9_v1_chr2_+_90687308_90687523	0.0968916	CAGUGCA	AK008712|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	NM_019758|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC028929|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK016000|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011814|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038899|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC038916|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK162807|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AF176009|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	BC065145|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK164169|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011874|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK151553|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008487|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK161441|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK007757|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK008463|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK011785|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK075890|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK003100|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK184198|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK215565|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)	AK217615|Mtch2|56428|mitochondrial carrier homolog 2 (C. elegans)
mm9_v1_chr7_-_139791248_139791319	0.0966382	CAGUGCA	BC139757|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222444|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF222445|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223361|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223362|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223363|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223674|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	AF223675|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)	NM_009123|Nkx1-2|20231|NK1 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr3_+_21975544_21975859	0.0962026	CAGUGCA	AK036064|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	NM_030732|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1	AK033347|Tbl1xr1|81004|transducin (beta)-like 1X-linked receptor 1
mm9_v1_chr3_+_152058937_152059038	0.0949462	CAGUGCA	NM_001080755|Zzz3|108946|zinc finger, ZZ domain containing 3	AK131150|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chrX_+_135751704_135751704	0.0947264	CAGUGCA	NM_001164631|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164632|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164633|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr2_+_130732201_130732231	0.0933775	CAGUGCA	AK155069|Atrn|11990|attractin	AF116897|Atrn|11990|attractin	NM_009730|Atrn|11990|attractin
mm9_v1_chr17_+_36053855_36053941	0.0921306	CAGUGCA	NM_175934|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK004266|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK011552|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK079389|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK031654|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK053183|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	AK079918|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10	BC030903|Ppp1r10|52040|protein phosphatase 1, regulatory subunit 10
mm9_v1_chr13_-_107726930_107727002	0.0910926	CAGUGCA	BC031900|Ipo11|76582|importin 11	BC029746|Ipo11|76582|importin 11	NM_029665|Ipo11|76582|importin 11
mm9_v1_chr2_-_179711350_179711395	0.0903889	CAGUGCA	NM_001081092|Taf4a|228980|TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr15_+_75447114_75447188	0.0902826	CAGUGCA	NM_001044718|Zfp41|22701|zinc finger protein 41	NM_011759|Zfp41|22701|zinc finger protein 41	AK030420|Zfp41|22701|zinc finger protein 41	BC053927|Zfp41|22701|zinc finger protein 41
mm9_v1_chr1_-_184271729_184271762	0.0902448	CAGUGCA	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chr4_+_11118855_11118930	0.0901947	CAGUGCA	NM_009830|Ccne2|12448|cyclin E2	AK010929|Ccne2|12448|cyclin E2	AK031116|Ccne2|12448|cyclin E2	AK037791|Ccne2|12448|cyclin E2	AK167428|Ccne2|12448|cyclin E2
mm9_v1_chr16_-_11176350_11176485	0.0898353	CAGUGCA	BC027330|Zc3h7a|106205|zinc finger CCCH type containing 7 A	BC029320|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK150952|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK028438|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK040507|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK166876|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK167758|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK139351|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK161148|Zc3h7a|106205|zinc finger CCCH type containing 7 A	NM_145931|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr2_+_57090707_57090899	0.0893303	CAGUGCA	BC021359|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_010274|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK167152|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	U60987|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK034353|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK151189|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	D50430|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr4_+_108952859_108952895	0.0891505	CAGUGCA	NM_007943|Eps15|13858|epidermal growth factor receptor pathway substrate 15
mm9_v1_chr8_+_108583449_108583790	0.088948	CAGUGCA	NM_010901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK147708|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK155087|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK051602|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK134054|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK039929|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK220187|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120900|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	D85612|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887629|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887630|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887631|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
mm9_v1_chr15_-_79272478_79272599	0.0873846	CAGUGCA	NM_013767|Csnk1e|27373|casein kinase 1, epsilon
mm9_v1_chr2_-_167174531_167174736	0.0869962	CAGUGCA	AF142673|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	NM_019835|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	AB004786|B4galt5|56336|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
mm9_v1_chr8_+_11728104_11728202	0.0866941	CAGUGCA	NM_001113517|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK129064|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK139156|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr17_+_75404865_75404880	0.0861437	CAGUGCA	NM_019919|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr7_-_126138689_126138754	0.0855761	CAGUGCA	NM_001195774|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B	NM_022420|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B
mm9_v1_chr2_+_57090045_57090088	0.0845478	CAGUGCA	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr13_-_19711409_19711707	0.083275	CAGUGCA	DQ914440|Epdr1|105298|ependymin related protein 1 (zebrafish)	AF353717|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK192851|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK160413|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK166252|Epdr1|105298|ependymin related protein 1 (zebrafish)	BC014708|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK034083|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK038733|Epdr1|105298|ependymin related protein 1 (zebrafish)	AK046185|Epdr1|105298|ependymin related protein 1 (zebrafish)	NM_134065|Epdr1|105298|ependymin related protein 1 (zebrafish)
mm9_v1_chr15_+_89186142_89186276	0.0832421	CAGUGCA	NM_001115132|Ncaph2|52683|non-SMC condensin II complex, subunit H2	NM_025795|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK146642|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK152158|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK012142|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK088294|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK080447|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK153528|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK083981|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK165250|Ncaph2|52683|non-SMC condensin II complex, subunit H2	BC019422|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK037175|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK085584|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK169627|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK163958|Ncaph2|52683|non-SMC condensin II complex, subunit H2	BC003900|Ncaph2|52683|non-SMC condensin II complex, subunit H2	AK002487|Ncaph2|52683|non-SMC condensin II complex, subunit H2
mm9_v1_chr3_+_115591053_115591114	0.0831172	CAGUGCA	AK045127|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK046753|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK034652|Dph5|69740|DPH5 homolog (S. cerevisiae)	BC060372|Dph5|69740|DPH5 homolog (S. cerevisiae)	NM_027193|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK010475|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK045548|Dph5|69740|DPH5 homolog (S. cerevisiae)	AK046024|Dph5|69740|DPH5 homolog (S. cerevisiae)
mm9_v1_chrX_+_50265390_50265552	0.0827661	CAGUGCA	AK157045|Phf6|70998|PHD finger protein 6	AK012211|Phf6|70998|PHD finger protein 6	AK077803|Phf6|70998|PHD finger protein 6	AK163345|Phf6|70998|PHD finger protein 6	BC043127|Phf6|70998|PHD finger protein 6	NM_027642|Phf6|70998|PHD finger protein 6	AK141804|Phf6|70998|PHD finger protein 6	BC055330|Phf6|70998|PHD finger protein 6	AK122560|Phf6|70998|PHD finger protein 6	AK028498|Phf6|70998|PHD finger protein 6	AK038320|Phf6|70998|PHD finger protein 6	BC057374|Phf6|70998|PHD finger protein 6	AK192342|Phf6|70998|PHD finger protein 6	AK213676|Phf6|70998|PHD finger protein 6
mm9_v1_chr6_+_97757012_97757093	0.0826464	CAGUGCA	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr1_+_82836029_82836087	0.0816938	CAGUGCA	AK048326|Agfg1|15463|ArfGAP with FG repeats 1	NM_010472|Agfg1|15463|ArfGAP with FG repeats 1	AK049400|Agfg1|15463|ArfGAP with FG repeats 1	BC031154|Agfg1|15463|ArfGAP with FG repeats 1
mm9_v1_chr8_+_123061308_123061392	0.0815804	CAGUGCA	NM_001145896|Gse1|382034|genetic suppressor element 1	AK154829|Gse1|382034|genetic suppressor element 1	AK042915|Gse1|382034|genetic suppressor element 1
mm9_v1_chr5_+_124357243_124357339	0.0813688	CAGUGCA	AK135127|Denr|68184|density-regulated protein	AK017647|Denr|68184|density-regulated protein	AK010394|Denr|68184|density-regulated protein	AK018762|Denr|68184|density-regulated protein	AK083852|Denr|68184|density-regulated protein	NM_026603|Denr|68184|density-regulated protein	BC025143|Denr|68184|density-regulated protein	BC043922|Denr|68184|density-regulated protein
mm9_v1_chr1_-_130256055_130256293	0.0812203	CAGUGCA	AK188642|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK177954|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK180079|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK183692|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK194535|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK210474|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK211618|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK150726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146896|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC051658|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC057584|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK145520|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146770|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146272|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK088493|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	D86726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	NM_008567|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC050886|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
mm9_v1_chr19_-_44144244_44144286	0.0809489	CAGUGCA	AK145990|Erlin1|226144|ER lipid raft associated 1	NM_001164359|Erlin1|226144|ER lipid raft associated 1	NM_001164360|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr18_+_69504145_69504185	0.0809138	CAGUGCA	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr12_-_21379292_21379460	0.0805591	CAGUGCA	AJ007365|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC114999|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69613|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138416|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138420|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC145270|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC026052|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149288|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK139471|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC048792|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK137693|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK165739|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC094655|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK144161|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK142441|Adam17|11491|a disintegrin and metallopeptidase domain 17	NM_009615|Adam17|11491|a disintegrin and metallopeptidase domain 17	AB021709|Adam17|11491|a disintegrin and metallopeptidase domain 17
mm9_v1_chr2_-_63936044_63936094	0.0804724	CAGUGCA	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chrX_+_156278399_156278494	0.0798011	CAGUGCA	AK028299|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135728|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr15_+_57526212_57526467	0.0797148	CAGUGCA	NM_199449|Zhx2|387609|zinc fingers and homeoboxes 2	AK157631|Zhx2|387609|zinc fingers and homeoboxes 2	AK031782|Zhx2|387609|zinc fingers and homeoboxes 2	BC059178|Zhx2|387609|zinc fingers and homeoboxes 2
mm9_v1_chr15_+_40486577_40486623	0.0789422	CAGUGCA	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr8_+_130882920_130882997	0.0779377	CAGUGCA	AK082992|Nrp1|18186|neuropilin 1	AK083052|Nrp1|18186|neuropilin 1	AK164378|Nrp1|18186|neuropilin 1	NM_008737|Nrp1|18186|neuropilin 1	BC026730|Nrp1|18186|neuropilin 1	BC032048|Nrp1|18186|neuropilin 1	AK148372|Nrp1|18186|neuropilin 1
mm9_v1_chr9_-_45763300_45763376	0.0775033	CAGUGCA	AK081177|Sidt2|214597|SID1 transmembrane family, member 2	BC023957|Sidt2|214597|SID1 transmembrane family, member 2	NM_172257|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr4_-_129055233_129055271	0.0771512	CAGUGCA	AK010736|Zbtb8a|73680|zinc finger and BTB domain containing 8a	NM_028603|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr6_-_97098845_97098885	0.076896	CAGUGCA	AK037507|A130022J15Rik|101351|RIKEN cDNA A130022J15 gene	NM_175313|A130022J15Rik|101351|RIKEN cDNA A130022J15 gene
mm9_v1_chr8_+_3515373_3515441	0.076642	CAGUGCA	AF173829|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_001122818|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_015801|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK040720|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC054789|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC056999|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr5_+_34338625_34338665	0.0765929	CAGUGCA	AK147307|Nat8l|269642|N-acetyltransferase 8-like	NM_001001985|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr6_-_72330414_72330474	0.0764717	CAGUGCA	BC086925|Vamp5|53620|vesicle-associated membrane protein 5	AK009266|Vamp5|53620|vesicle-associated membrane protein 5	NM_001080742|Vamp5|53620|vesicle-associated membrane protein 5	NM_016872|Vamp5|53620|vesicle-associated membrane protein 5
mm9_v1_chr3_+_88101037_88101138	0.0760915	CAGUGCA	AK031293|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK158223|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK089548|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK146360|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK161630|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK171160|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	NM_009836|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	Z31556|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	BC054776|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK168052|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	BC139465|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	BC139467|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK154043|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK158254|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK158272|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)	AK156836|Cct3|12462|chaperonin containing Tcp1, subunit 3 (gamma)
mm9_v1_chr6_-_91423388_91423454	0.0759667	CAGUGCA	AK010479|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4	BC019405|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4	NM_133928|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4
mm9_v1_chr4_+_47366162_47366183	0.0758564	CAGUGCA	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr2_-_77118632_77118710	0.0745444	CAGUGCA	BC013245|Sestd1|228071|SEC14 and spectrin domains 1	AK047939|Sestd1|228071|SEC14 and spectrin domains 1	BC044853|Sestd1|228071|SEC14 and spectrin domains 1	NM_175465|Sestd1|228071|SEC14 and spectrin domains 1
mm9_v1_chr17_+_79336458_79336518	0.0743672	CAGUGCA	NM_028611|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene	AK010752|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene	AK090097|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene	BC108350|2410091C18Rik|73694|RIKEN cDNA 2410091C18 gene
mm9_v1_chr15_+_102236709_102236810	0.0737005	CAGUGCA	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr7_-_4610551_4610664	0.0735872	CAGUGCA	BC053076|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1	NM_172894|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1	AK080891|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr1_+_6204729_6204756	0.0729378	CAGUGCA	AB050017|Rb1cc1|12421|RB1-inducible coiled-coil 1	AB070619|Rb1cc1|12421|RB1-inducible coiled-coil 1	NM_009826|Rb1cc1|12421|RB1-inducible coiled-coil 1	AK020027|Rb1cc1|12421|RB1-inducible coiled-coil 1
mm9_v1_chr4_-_33010429_33010479	0.0723593	CAGUGCA	BC065177|Ankrd6|140577|ankyrin repeat domain 6	NM_001012450|Ankrd6|140577|ankyrin repeat domain 6	NM_080471|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr4_-_44180323_44180519	0.0722842	CAGUGCA	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr15_+_84753817_84753857	0.0721494	CAGUGCA	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr14_-_67691221_67691310	0.0718965	CAGUGCA	BC080692|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161704|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167530|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK220192|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161507|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	NM_028032|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK010380|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	BC065100|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK090027|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK164497|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167189|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm9_v1_chr4_-_133574655_133574730	0.0715061	CAGUGCA	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chr13_+_54723144_54723248	0.0709052	CAGUGCA	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr5_-_64360058_64360140	0.070899	CAGUGCA	AK133845|Rell1|100532|RELT-like 1	AK159944|Rell1|100532|RELT-like 1	AK161061|Rell1|100532|RELT-like 1	BC031198|Rell1|100532|RELT-like 1	BC066137|Rell1|100532|RELT-like 1	BC066160|Rell1|100532|RELT-like 1	AK140108|Rell1|100532|RELT-like 1	NM_145923|Rell1|100532|RELT-like 1
mm9_v1_chr11_-_78510874_78510941	0.0704274	CAGUGCA	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr12_-_103943059_103943209	0.06989	CAGUGCA	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chrX_+_103222548_103222685	0.0696953	CAGUGCA	AK017506|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK033254|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_001109757|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	NM_009726|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK155643|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK171563|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	AK172209|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U03434|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	U71091|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide	BC141395|Atp7a|11977|ATPase, Cu++ transporting, alpha polypeptide
mm9_v1_chr18_+_84257471_84257589	0.0695875	CAGUGCA	AK083082|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK047559|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK081988|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116427|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116428|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	NM_146090|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2
mm9_v1_chr14_-_47441795_47441916	0.06948	CAGUGCA	AB001732|Gmfb|63985|glia maturation factor, beta	BC040233|Gmfb|63985|glia maturation factor, beta	AB050013|Gmfb|63985|glia maturation factor, beta	BC049134|Gmfb|63985|glia maturation factor, beta	AK013970|Gmfb|63985|glia maturation factor, beta	AK013947|Gmfb|63985|glia maturation factor, beta	AF297220|Gmfb|63985|glia maturation factor, beta	AK142014|Gmfb|63985|glia maturation factor, beta	NM_022023|Gmfb|63985|glia maturation factor, beta
mm9_v1_chr1_+_12708582_12708625	0.0691135	CAGUGCA	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr7_-_52973262_52973371	0.0686379	CAGUGCA	AK146414|Sphk2|56632|sphingosine kinase 2	AK151990|Sphk2|56632|sphingosine kinase 2	BC053737|Sphk2|56632|sphingosine kinase 2	AF245448|Sphk2|56632|sphingosine kinase 2	NM_001172561|Sphk2|56632|sphingosine kinase 2	NM_203280|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr8_+_127386922_127387009	0.0684563	CAGUGCA	NM_010322|Gnpat|14712|glyceronephosphate O-acyltransferase	AK004771|Gnpat|14712|glyceronephosphate O-acyltransferase	AK010896|Gnpat|14712|glyceronephosphate O-acyltransferase	AK004630|Gnpat|14712|glyceronephosphate O-acyltransferase	AK166997|Gnpat|14712|glyceronephosphate O-acyltransferase	AF110769|Gnpat|14712|glyceronephosphate O-acyltransferase	BC003225|Gnpat|14712|glyceronephosphate O-acyltransferase	AK150810|Gnpat|14712|glyceronephosphate O-acyltransferase	BC025972|Gnpat|14712|glyceronephosphate O-acyltransferase
mm9_v1_chr4_+_33397279_33397404	0.0681982	CAGUGCA	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr2_-_154429368_154429412	0.0681787	CAGUGCA	BC025796|Pxmp4|59038|peroxisomal membrane protein 4	AJ271476|Pxmp4|59038|peroxisomal membrane protein 4	AK143785|Pxmp4|59038|peroxisomal membrane protein 4	AK156743|Pxmp4|59038|peroxisomal membrane protein 4	AK050647|Pxmp4|59038|peroxisomal membrane protein 4	NM_021534|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr7_-_54263783_54263783	0.0678182	CAGUGCA	NM_175318|Spty2d1|101685|SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
mm9_v1_chr14_-_52898946_52899069	0.0677291	CAGUGCA	AK044202|Rab2b|76338|RAB2B, member RAS oncogene family	BC033312|Rab2b|76338|RAB2B, member RAS oncogene family	AK005230|Rab2b|76338|RAB2B, member RAS oncogene family	BC054719|Rab2b|76338|RAB2B, member RAS oncogene family	AK038393|Rab2b|76338|RAB2B, member RAS oncogene family	AK038576|Rab2b|76338|RAB2B, member RAS oncogene family	AK169657|Rab2b|76338|RAB2B, member RAS oncogene family	BC046334|Rab2b|76338|RAB2B, member RAS oncogene family	NM_172601|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr3_+_88520743_88520881	0.06758	CAGUGCA	NM_001163310|Rit1|19769|Ras-like without CAAX 1	NM_009069|Rit1|19769|Ras-like without CAAX 1	AK014126|Rit1|19769|Ras-like without CAAX 1	AK164196|Rit1|19769|Ras-like without CAAX 1	AK005357|Rit1|19769|Ras-like without CAAX 1	AK168254|Rit1|19769|Ras-like without CAAX 1	BC012694|Rit1|19769|Ras-like without CAAX 1	AK018785|Rit1|19769|Ras-like without CAAX 1	U71205|Rit1|19769|Ras-like without CAAX 1
mm9_v1_chr18_+_77183105_77183189	0.0673653	CAGUGCA	NM_001039201|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK147794|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2
mm9_v1_chr19_+_42164922_42164992	0.0666728	CAGUGCA	NM_145501|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	AK030725|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC110363|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC089309|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha
mm9_v1_chr16_+_30599808_30599823	0.0659801	CAGUGCA	AK083036|Fam43a|224093|family with sequence similarity 43, member A	NM_177632|Fam43a|224093|family with sequence similarity 43, member A	AK137950|Fam43a|224093|family with sequence similarity 43, member A	BC099947|Fam43a|224093|family with sequence similarity 43, member A
mm9_v1_chr13_-_54666552_54666754	0.065633	CAGUGCA	AK217762|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK173126|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC039775|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK014792|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK028697|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK016176|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK167616|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC054417|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC043040|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK004845|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK159945|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK145025|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK169399|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC033445|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	NM_133797|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene
mm9_v1_chr4_-_148800731_148800857	0.0653696	CAGUGCA	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr17_+_43526389_43526484	0.0648169	CAGUGCA	NM_001081178|Gpr116|224792|G protein-coupled receptor 116
mm9_v1_chr12_-_81537525_81537603	0.0647991	CAGUGCA	BC046813|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK165096|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK137579|Dcaf5|320808|DDB1 and CUL4 associated factor 5	NM_177267|Dcaf5|320808|DDB1 and CUL4 associated factor 5
mm9_v1_chr6_-_71390592_71390638	0.0646947	CAGUGCA	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr3_+_135101664_135101764	0.064217	CAGUGCA	AK153111|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152231|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK153410|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167801|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK151594|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK032885|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167077|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK090099|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC098220|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC024351|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK004001|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK049906|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	NM_025356|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK167650|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159546|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK152541|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK159963|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	BC057941|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK088448|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr1_+_134373910_134373945	0.0637753	CAGUGCA	AK171177|Rbbp5|213464|retinoblastoma binding protein 5	AK154782|Rbbp5|213464|retinoblastoma binding protein 5	NM_172517|Rbbp5|213464|retinoblastoma binding protein 5	AK170520|Rbbp5|213464|retinoblastoma binding protein 5
mm9_v1_chr6_-_93863547_93863683	0.0636706	CAGUGCA	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr11_+_69435553_69435610	0.0635418	CAGUGCA	AK011406|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	AK161230|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	BC061227|Sat2|69215|spermidine/spermine N1-acetyl transferase 2	NM_026991|Sat2|69215|spermidine/spermine N1-acetyl transferase 2
mm9_v1_chr4_+_86394436_86394546	0.0625511	CAGUGCA	AK155220|Dennd4c|329877|DENN/MADD domain containing 4C	NM_001081014|Dennd4c|329877|DENN/MADD domain containing 4C	NM_184088|Dennd4c|329877|DENN/MADD domain containing 4C	AK154950|Dennd4c|329877|DENN/MADD domain containing 4C
mm9_v1_chr15_-_53733989_53734012	0.0624025	CAGUGCA	AK044142|Samd12|320679|sterile alpha motif domain containing 12	BC119383|Samd12|320679|sterile alpha motif domain containing 12	BC119385|Samd12|320679|sterile alpha motif domain containing 12	BC144982|Samd12|320679|sterile alpha motif domain containing 12	NM_177225|Samd12|320679|sterile alpha motif domain containing 12
mm9_v1_chr11_+_57458925_57459050	0.0612206	CAGUGCA	AK162424|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	NM_134189|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK143714|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK159362|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK159088|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	BC060617|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK131155|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	AK172609|Galnt10|171212|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10
mm9_v1_chr6_+_15670660_15670769	0.0598274	CAGUGCA	AK165016|Mdfic|16543|MyoD family inhibitor domain containing	NM_175088|Mdfic|16543|MyoD family inhibitor domain containing	AK086117|Mdfic|16543|MyoD family inhibitor domain containing	AK172522|Mdfic|16543|MyoD family inhibitor domain containing	AK166462|Mdfic|16543|MyoD family inhibitor domain containing	AK080178|Mdfic|16543|MyoD family inhibitor domain containing	AK134050|Mdfic|16543|MyoD family inhibitor domain containing	AK048821|Mdfic|16543|MyoD family inhibitor domain containing
mm9_v1_chr17_-_33897428_33897430	0.0596837	CAGUGCA	NM_008997|Rab11b|19326|RAB11B, member RAS oncogene family
mm9_v1_chr9_-_123626642_123626742	0.0596348	CAGUGCA	AK046515|Lztfl1|93730|leucine zipper transcription factor-like 1	BC037045|Lztfl1|93730|leucine zipper transcription factor-like 1	AJ297352|Lztfl1|93730|leucine zipper transcription factor-like 1	BC098224|Lztfl1|93730|leucine zipper transcription factor-like 1	BC026840|Lztfl1|93730|leucine zipper transcription factor-like 1	NM_033322|Lztfl1|93730|leucine zipper transcription factor-like 1	AK054003|Lztfl1|93730|leucine zipper transcription factor-like 1	AK157770|Lztfl1|93730|leucine zipper transcription factor-like 1	AK145263|Lztfl1|93730|leucine zipper transcription factor-like 1	AK030068|Lztfl1|93730|leucine zipper transcription factor-like 1	AK029671|Lztfl1|93730|leucine zipper transcription factor-like 1	AK041091|Lztfl1|93730|leucine zipper transcription factor-like 1	AK147312|Lztfl1|93730|leucine zipper transcription factor-like 1
mm9_v1_chr18_+_80403593_80403727	0.0590162	CAGUGCA	BC031634|Txnl4a|27366|thioredoxin-like 4A	BC014770|Txnl4a|27366|thioredoxin-like 4A	NM_001042408|Txnl4a|27366|thioredoxin-like 4A	AK011717|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr7_+_16986478_16986599	0.0589398	CAGUGCA	NM_198631|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151148|Zc3h4|330474|zinc finger CCCH-type containing 4	AK151306|Zc3h4|330474|zinc finger CCCH-type containing 4	BC057627|Zc3h4|330474|zinc finger CCCH-type containing 4
mm9_v1_chr10_+_93498745_93498948	0.0587454	CAGUGCA	AK044341|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	NM_053072|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	AK173157|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139019|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6	BC139022|Fgd6|13998|FYVE, RhoGEF and PH domain containing 6
mm9_v1_chr4_-_142802606_142802625	0.0587072	CAGUGCA	AK087820|Prdm2|110593|PR domain containing 2, with ZNF domain	NM_001081355|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr1_-_157820378_157820386	0.0587036	CAGUGCA	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr6_-_112897259_112897274	0.0584881	CAGUGCA	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr11_+_53164267_53164268	0.0577193	CAGUGCA	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr16_+_32608981_32609106	0.0575295	CAGUGCA	NM_011638|Tfrc|22042|transferrin receptor	AK048228|Tfrc|22042|transferrin receptor	AK088961|Tfrc|22042|transferrin receptor	BC054522|Tfrc|22042|transferrin receptor
mm9_v1_chr4_-_55545337_55545348	0.0574429	CAGUGCA	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr1_-_172145521_172145534	0.0572129	CAGUGCA	BC058732|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	NM_010633|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	AK013347|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr12_-_60320438_60320474	0.0566989	CAGUGCA	BC020022|Fbxo33|70611|F-box protein 33	NM_001033156|Fbxo33|70611|F-box protein 33
mm9_v1_chr15_+_6658368_6658402	0.0566343	CAGUGCA	AK029196|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036149|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036492|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK082586|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK087858|Rictor|78757|RPTOR independent companion of MTOR, complex 2	NM_030168|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY540053|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120903|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120904|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK019537|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK054119|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY497009|Rictor|78757|RPTOR independent companion of MTOR, complex 2
mm9_v1_chr6_-_29559606_29559647	0.0564924	CAGUGCA	BC064646|Tnpo3|320938|transportin 3	NM_177296|Tnpo3|320938|transportin 3	AK145723|Tnpo3|320938|transportin 3	AK045143|Tnpo3|320938|transportin 3
mm9_v1_chr16_+_4684069_4684136	0.0561213	CAGUGCA	NM_001135112|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	NM_023646|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK167511|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK031250|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK004910|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	BC027240|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK004575|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	AK007852|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3	BC003920|Dnaja3|83945|DnaJ (Hsp40) homolog, subfamily A, member 3
mm9_v1_chr17_-_71660199_71660362	0.0559234	CAGUGCA	GQ872457|Emilin2|246707|elastin microfibril interfacer 2	GQ872460|Emilin2|246707|elastin microfibril interfacer 2	AF468645|Emilin2|246707|elastin microfibril interfacer 2	AK171616|Emilin2|246707|elastin microfibril interfacer 2	AK155913|Emilin2|246707|elastin microfibril interfacer 2	AK170391|Emilin2|246707|elastin microfibril interfacer 2	AK154230|Emilin2|246707|elastin microfibril interfacer 2	AK170288|Emilin2|246707|elastin microfibril interfacer 2	AK171579|Emilin2|246707|elastin microfibril interfacer 2	AK171592|Emilin2|246707|elastin microfibril interfacer 2	AK155037|Emilin2|246707|elastin microfibril interfacer 2	AK155366|Emilin2|246707|elastin microfibril interfacer 2	AK171020|Emilin2|246707|elastin microfibril interfacer 2	AK155879|Emilin2|246707|elastin microfibril interfacer 2	AK155306|Emilin2|246707|elastin microfibril interfacer 2	AK155797|Emilin2|246707|elastin microfibril interfacer 2	AK155554|Emilin2|246707|elastin microfibril interfacer 2	AK155878|Emilin2|246707|elastin microfibril interfacer 2	AK170081|Emilin2|246707|elastin microfibril interfacer 2	AK171309|Emilin2|246707|elastin microfibril interfacer 2	AK155909|Emilin2|246707|elastin microfibril interfacer 2	AK170801|Emilin2|246707|elastin microfibril interfacer 2	NM_145158|Emilin2|246707|elastin microfibril interfacer 2	AK170953|Emilin2|246707|elastin microfibril interfacer 2	AK170822|Emilin2|246707|elastin microfibril interfacer 2	AK171015|Emilin2|246707|elastin microfibril interfacer 2	AK155918|Emilin2|246707|elastin microfibril interfacer 2
mm9_v1_chr11_+_86298106_86298244	0.0552503	CAGUGCA	AK036401|Rnft1|76892|ring finger protein, transmembrane 1	NM_029788|Rnft1|76892|ring finger protein, transmembrane 1	AK171077|Rnft1|76892|ring finger protein, transmembrane 1	AK153293|Rnft1|76892|ring finger protein, transmembrane 1	BC050796|Rnft1|76892|ring finger protein, transmembrane 1	AK002624|Rnft1|76892|ring finger protein, transmembrane 1
mm9_v1_chr4_-_19636000_19636212	0.0550824	CAGUGCA	AK137588|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	BC026829|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK168567|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK032232|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	AK042432|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1	NM_177327|Wwp1|107568|WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr3_-_103594950_103595238	0.0550817	CAGUGCA	BC145697|Hipk1|15257|homeodomain interacting protein kinase 1	BC145699|Hipk1|15257|homeodomain interacting protein kinase 1	AF170303|Hipk1|15257|homeodomain interacting protein kinase 1	AF170304|Hipk1|15257|homeodomain interacting protein kinase 1	AF077658|Hipk1|15257|homeodomain interacting protein kinase 1	AK134408|Hipk1|15257|homeodomain interacting protein kinase 1	NM_010432|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr17_-_66799086_66799133	0.055069	CAGUGCA	AK147631|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	AK147691|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	AK147205|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	NM_001114098|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene	NM_172963|1110012J17Rik|68617|RIKEN cDNA 1110012J17 gene
mm9_v1_chr3_+_152009436_152009469	0.0550422	CAGUGCA	AK087467|Usp33|170822|ubiquitin specific peptidase 33	NM_001076676|Usp33|170822|ubiquitin specific peptidase 33	NM_133247|Usp33|170822|ubiquitin specific peptidase 33	AF383174|Usp33|170822|ubiquitin specific peptidase 33	AK082251|Usp33|170822|ubiquitin specific peptidase 33	AK082943|Usp33|170822|ubiquitin specific peptidase 33
mm9_v1_chr18_+_80403500_80403576	0.0544129	CAGUGCA	AK010599|Txnl4a|27366|thioredoxin-like 4A	NM_001038608|Txnl4a|27366|thioredoxin-like 4A	NM_025299|Txnl4a|27366|thioredoxin-like 4A	AK148287|Txnl4a|27366|thioredoxin-like 4A	AK166497|Txnl4a|27366|thioredoxin-like 4A	BC029327|Txnl4a|27366|thioredoxin-like 4A	AK007331|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr1_+_106665395_106665416	0.0543286	CAGUGCA	AK034475|Cdh20|23836|cadherin 20	NM_011800|Cdh20|23836|cadherin 20	BC119606|Cdh20|23836|cadherin 20	BC119607|Cdh20|23836|cadherin 20
mm9_v1_chr16_+_64851768_64851933	0.0542392	CAGUGCA	AK086053|Cggbp1|106143|CGG triplet repeat binding protein 1	AK049631|Cggbp1|106143|CGG triplet repeat binding protein 1	AK052195|Cggbp1|106143|CGG triplet repeat binding protein 1	BC057053|Cggbp1|106143|CGG triplet repeat binding protein 1	AK083450|Cggbp1|106143|CGG triplet repeat binding protein 1	BC043097|Cggbp1|106143|CGG triplet repeat binding protein 1	NM_178647|Cggbp1|106143|CGG triplet repeat binding protein 1
mm9_v1_chr5_-_123439064_123439107	0.0532261	CAGUGCA	BC065090|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK043352|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_001003953|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK136625|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr17_+_26813327_26813409	0.0526982	CAGUGCA	AK017760|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	NM_025272|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK159669|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK134836|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK007610|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK008464|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK168015|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	BC024733|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK013229|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK030335|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E
mm9_v1_chr7_+_87377748_87377824	0.0526854	CAGUGCA	AK166345|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK143704|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK085577|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK086166|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	NM_178752|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK084531|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	BC037479|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene
mm9_v1_chr9_-_50817077_50817177	0.0525412	CAGUGCA	AB067780|Sik2|235344|salt inducible kinase 2	AK090386|Sik2|235344|salt inducible kinase 2	AK028526|Sik2|235344|salt inducible kinase 2	AK041032|Sik2|235344|salt inducible kinase 2	NM_178710|Sik2|235344|salt inducible kinase 2
mm9_v1_chr6_+_51420581_51420714	0.0518474	CAGUGCA	NM_007624|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)	AK002910|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)	AK017958|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)	AK146376|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)	BC003840|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)	BC108370|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)	AK083957|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)	BC059831|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)
mm9_v1_chr2_-_119980243_119980354	0.0511319	CAGUGCA	BC012272|Ehd4|98878|EH-domain containing 4	AK149760|Ehd4|98878|EH-domain containing 4	AK163835|Ehd4|98878|EH-domain containing 4	AK147186|Ehd4|98878|EH-domain containing 4	AK159235|Ehd4|98878|EH-domain containing 4	AK159597|Ehd4|98878|EH-domain containing 4	NM_133838|Ehd4|98878|EH-domain containing 4	AK166101|Ehd4|98878|EH-domain containing 4	AK169343|Ehd4|98878|EH-domain containing 4
mm9_v1_chr5_+_135845811_135845865	0.0511199	CAGUGCA	AK079400|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	NM_145414|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK156651|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AF412029|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5	AK149521|Nsun5|100609|NOL1/NOP2/Sun domain family, member 5
mm9_v1_chr11_-_101846064_101846112	0.0510633	CAGUGCA	AF280809|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK008734|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	AK170772|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	NM_028207|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	BC016269|Dusp3|72349|dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
mm9_v1_chr14_+_48740495_48740543	0.0510533	CAGUGCA	AK030564|Peli2|93834|pellino 2	AK045515|Peli2|93834|pellino 2	NM_033602|Peli2|93834|pellino 2
mm9_v1_chr9_+_55174719_55174759	0.0508049	CAGUGCA	BC068128|AI118078|244886|expressed sequence AI118078	AK036040|AI118078|244886|expressed sequence AI118078	NM_172923|AI118078|244886|expressed sequence AI118078
mm9_v1_chr2_-_122528199_122528447	0.0507187	CAGUGCA	AF003747|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	BC117997|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	AK134245|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	AK166106|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4	NM_011774|Slc30a4|22785|solute carrier family 30 (zinc transporter), member 4
mm9_v1_chr10_+_79689342_79689484	0.0506513	CAGUGCA	AK158750|Mum1|68114|melanoma associated antigen (mutated) 1	NM_023431|Mum1|68114|melanoma associated antigen (mutated) 1	AK159972|Mum1|68114|melanoma associated antigen (mutated) 1	AK170459|Mum1|68114|melanoma associated antigen (mutated) 1	AK154610|Mum1|68114|melanoma associated antigen (mutated) 1
mm9_v1_chr1_+_75378688_75378710	0.0499506	CAGUGCA	NM_001085371|Speg|11790|SPEG complex locus	AK164360|Speg|11790|SPEG complex locus
mm9_v1_chr1_+_43155550_43155613	0.0498462	CAGUGCA	BC006931|AI597479|98404|expressed sequence AI597479	NM_133818|AI597479|98404|expressed sequence AI597479	AK081372|AI597479|98404|expressed sequence AI597479
mm9_v1_chr15_+_75740152_75740190	0.049687	CAGUGCA	AK051177|Tigd5|105734|tigger transposable element derived 5	BC099838|Tigd5|105734|tigger transposable element derived 5	NM_178646|Tigd5|105734|tigger transposable element derived 5	AK036241|Tigd5|105734|tigger transposable element derived 5	AK086663|Tigd5|105734|tigger transposable element derived 5	AK165093|Tigd5|105734|tigger transposable element derived 5	BC138289|Tigd5|105734|tigger transposable element derived 5
mm9_v1_chr8_+_112302530_112302620	0.0491994	CAGUGCA	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr5_-_31456576_31456630	0.0485375	CAGUGCA	BC013452|Mpv17|17527|MpV17 mitochondrial inner membrane protein	AK040477|Mpv17|17527|MpV17 mitochondrial inner membrane protein	M36411|Mpv17|17527|MpV17 mitochondrial inner membrane protein	NM_008622|Mpv17|17527|MpV17 mitochondrial inner membrane protein
mm9_v1_chr9_+_72380046_72380064	0.0483897	CAGUGCA	AK090370|Rfx7|319758|regulatory factor X, 7	NM_001033536|Rfx7|319758|regulatory factor X, 7	AK144999|Rfx7|319758|regulatory factor X, 7
mm9_v1_chrX_-_103207106_103207254	0.048138	CAGUGCA	AK144696|Magt1|67075|magnesium transporter 1	AK012185|Magt1|67075|magnesium transporter 1	AK013243|Magt1|67075|magnesium transporter 1	AK136622|Magt1|67075|magnesium transporter 1	BC003881|Magt1|67075|magnesium transporter 1	AK018623|Magt1|67075|magnesium transporter 1	AK010320|Magt1|67075|magnesium transporter 1	DQ000005|Magt1|67075|magnesium transporter 1	NM_001190409|Magt1|67075|magnesium transporter 1	NM_025952|Magt1|67075|magnesium transporter 1
mm9_v1_chr11_+_78141923_78141987	0.0477375	CAGUGCA	BC058979|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	NM_201406|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK166408|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK033331|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK043232|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK053771|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK039604|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK045759|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK142871|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK158128|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK169633|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK153300|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK151858|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK152229|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S
mm9_v1_chr11_-_103224633_103224824	0.0475711	CAGUGCA	AK017636|Sh3d20|70559|SH3 domain containing 20	NM_183288|Sh3d20|70559|SH3 domain containing 20
mm9_v1_chr19_-_7557690_7557778	0.0472943	CAGUGCA	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chr2_+_17976897_17976897	0.0468525	CAGUGCA	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr3_+_116297899_116297929	0.0447515	CAGUGCA	AK013338|Sass6|72776|spindle assembly 6 homolog (C. elegans)	BC050110|Sass6|72776|spindle assembly 6 homolog (C. elegans)	NM_028349|Sass6|72776|spindle assembly 6 homolog (C. elegans)	AK145076|Sass6|72776|spindle assembly 6 homolog (C. elegans)	AK165224|Sass6|72776|spindle assembly 6 homolog (C. elegans)
mm9_v1_chr12_+_3426883_3427022	0.0443752	CAGUGCA	AK080679|Asxl2|75302|additional sex combs like 2 (Drosophila)	NM_172421|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK036839|Asxl2|75302|additional sex combs like 2 (Drosophila)	AK142135|Asxl2|75302|additional sex combs like 2 (Drosophila)	BC141140|Asxl2|75302|additional sex combs like 2 (Drosophila)
mm9_v1_chr19_-_9973901_9974022	0.0440889	CAGUGCA	BC021761|Incenp|16319|inner centromere protein	AK034764|Incenp|16319|inner centromere protein	AK081841|Incenp|16319|inner centromere protein	BC052414|Incenp|16319|inner centromere protein	AF117610|Incenp|16319|inner centromere protein	BC037011|Incenp|16319|inner centromere protein	AK088627|Incenp|16319|inner centromere protein	NM_016692|Incenp|16319|inner centromere protein
mm9_v1_chr9_-_88376937_88377419	0.0439552	CAGUGCA	BC080309|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC108363|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK083398|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK077588|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC050079|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC055863|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK076026|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AB035725|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	AK034845|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC041148|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	BC058807|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019666|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein	NM_019796|Syncrip|56403|synaptotagmin binding, cytoplasmic RNA interacting protein
mm9_v1_chr15_-_98748371_98748661	0.0437365	CAGUGCA	AY052398|Lmbr1l|74775|limb region 1 like	AK003656|Lmbr1l|74775|limb region 1 like	BC023397|Lmbr1l|74775|limb region 1 like	AK170328|Lmbr1l|74775|limb region 1 like	AK143891|Lmbr1l|74775|limb region 1 like	AK030589|Lmbr1l|74775|limb region 1 like	AK049110|Lmbr1l|74775|limb region 1 like	NM_029098|Lmbr1l|74775|limb region 1 like	AK154968|Lmbr1l|74775|limb region 1 like
mm9_v1_chr19_-_44181897_44181978	0.0436541	CAGUGCA	AK035326|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	U12473|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK150039|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK165275|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK018671|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155328|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	BC018243|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155393|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK164236|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_001162410|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_007700|Chuk|12675|conserved helix-loop-helix ubiquitous kinase
mm9_v1_chr17_-_26645403_26645422	0.0435599	CAGUGCA	BC006967|Dusp1|19252|dual specificity phosphatase 1	X61940|Dusp1|19252|dual specificity phosphatase 1	AK159658|Dusp1|19252|dual specificity phosphatase 1	AK150433|Dusp1|19252|dual specificity phosphatase 1	AK152183|Dusp1|19252|dual specificity phosphatase 1	AK152905|Dusp1|19252|dual specificity phosphatase 1	AK159251|Dusp1|19252|dual specificity phosphatase 1	AK159363|Dusp1|19252|dual specificity phosphatase 1	AK159567|Dusp1|19252|dual specificity phosphatase 1	AK167602|Dusp1|19252|dual specificity phosphatase 1	AK168627|Dusp1|19252|dual specificity phosphatase 1	NM_013642|Dusp1|19252|dual specificity phosphatase 1	AK145903|Dusp1|19252|dual specificity phosphatase 1	AK152324|Dusp1|19252|dual specificity phosphatase 1
mm9_v1_chr5_-_20457608_20457646	0.0434482	CAGUGCA	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chr3_-_104855832_104856063	0.043395	CAGUGCA	BC003236|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK145085|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK051259|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK030438|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK129359|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163332|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163333|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK029901|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_030249|Cttnbp2nl|80281|CTTNBP2 N-terminal like
mm9_v1_chr3_+_133903056_133903111	0.0432171	CAGUGCA	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chr11_-_96685326_96685440	0.0431518	CAGUGCA	AK148471|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130453|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130454|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130451|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130452|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr15_-_3945704_3945774	0.0431236	CAGUGCA	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr2_+_163820920_163821078	0.0427795	CAGUGCA	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr18_+_14941735_14941757	0.0423051	CAGUGCA	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr1_-_3661578_3661628	0.0421919	CAGUGCA	AY534250|Xkr4|497097|X Kell blood group precursor related family member 4	NM_001011874|Xkr4|497097|X Kell blood group precursor related family member 4
mm9_v1_chr15_+_12134833_12134872	0.0420302	CAGUGCA	AK076161|Mtmr12|268783|myotubularin related protein 12	BC054352|Mtmr12|268783|myotubularin related protein 12	NM_172958|Mtmr12|268783|myotubularin related protein 12	AK050099|Mtmr12|268783|myotubularin related protein 12	AK050236|Mtmr12|268783|myotubularin related protein 12	BC042573|Mtmr12|268783|myotubularin related protein 12
mm9_v1_chr5_-_36873134_36873271	0.0420168	CAGUGCA	AB064521|Tbc1d14|100855|TBC1 domain family, member 14	BC011420|Tbc1d14|100855|TBC1 domain family, member 14	AK013092|Tbc1d14|100855|TBC1 domain family, member 14	NM_001113364|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr10_+_127814144_127814228	0.0418962	CAGUGCA	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr7_+_97278722_97279067	0.0418822	CAGUGCA	AK170373|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC025566|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	NM_146194|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC057683|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC021491|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK144960|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC023843|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK220291|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC011470|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK162360|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AY206701|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr5_-_5380077_5380250	0.041601	CAGUGCA	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr3_-_86978431_86978668	0.0413616	CAGUGCA	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr11_-_95375878_95375924	0.0413239	CAGUGCA	AK158760|Nxph3|104079|neurexophilin 3	NM_130858|Nxph3|104079|neurexophilin 3
mm9_v1_chr10_+_59809598_59809683	0.0412478	CAGUGCA	NM_001159572|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	NM_028732|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK079734|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK170059|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK032383|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK159086|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK159864|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK163118|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK170419|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK171045|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK033393|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK030479|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK014600|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK131118|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	BC003967|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene
mm9_v1_chr16_+_29579427_29579538	0.0403498	CAGUGCA	AB044138|Opa1|74143|optic atrophy 1 homolog (human)	NM_133752|Opa1|74143|optic atrophy 1 homolog (human)	AK029157|Opa1|74143|optic atrophy 1 homolog (human)	AK053861|Opa1|74143|optic atrophy 1 homolog (human)	AK004715|Opa1|74143|optic atrophy 1 homolog (human)	AK030835|Opa1|74143|optic atrophy 1 homolog (human)	AK145620|Opa1|74143|optic atrophy 1 homolog (human)	AK038446|Opa1|74143|optic atrophy 1 homolog (human)	BC052704|Opa1|74143|optic atrophy 1 homolog (human)	AK050383|Opa1|74143|optic atrophy 1 homolog (human)	AK164872|Opa1|74143|optic atrophy 1 homolog (human)	AK044657|Opa1|74143|optic atrophy 1 homolog (human)	BC138665|Opa1|74143|optic atrophy 1 homolog (human)	BC145959|Opa1|74143|optic atrophy 1 homolog (human)
mm9_v1_chr2_+_152561983_152562076	0.0398415	CAGUGCA	M31885|Id1|15901|inhibitor of DNA binding 1	AK008264|Id1|15901|inhibitor of DNA binding 1	BC025073|Id1|15901|inhibitor of DNA binding 1	NM_010495|Id1|15901|inhibitor of DNA binding 1	U43884|Id1|15901|inhibitor of DNA binding 1	AB221668|Id1|15901|inhibitor of DNA binding 1	CT010243|Id1|15901|inhibitor of DNA binding 1
mm9_v1_chr1_-_176851949_176851953	0.0395086	CAGUGCA	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr17_-_63849928_63849928	0.0393925	CAGUGCA	NM_015794|Fbxl17|50758|F-box and leucine-rich repeat protein 17
mm9_v1_chr4_-_136454674_136454768	0.039348	CAGUGCA	X58861|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide	AK159343|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide	AK002655|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide	AK136737|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide	AK150771|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide	AK159210|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide	BC002086|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide	NM_007572|C1qa|12259|complement component 1, q subcomponent, alpha polypeptide
mm9_v1_chr9_-_20264387_20264605	0.0391571	CAGUGCA	AK141740|Zfp26|22688|zinc finger protein 26	AK029298|Zfp26|22688|zinc finger protein 26	AK017201|Zfp26|22688|zinc finger protein 26	AK082002|Zfp26|22688|zinc finger protein 26	NM_011753|Zfp26|22688|zinc finger protein 26	AK085739|Zfp26|22688|zinc finger protein 26
mm9_v1_chr3_+_51219882_51219968	0.0391314	CAGUGCA	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr17_-_48548973_48549148	0.0384666	CAGUGCA	AK156487|Nfya|18044|nuclear transcription factor-Y alpha	BC029695|Nfya|18044|nuclear transcription factor-Y alpha	X55315|Nfya|18044|nuclear transcription factor-Y alpha	BC057099|Nfya|18044|nuclear transcription factor-Y alpha	AK137561|Nfya|18044|nuclear transcription factor-Y alpha	AK004729|Nfya|18044|nuclear transcription factor-Y alpha	AK143723|Nfya|18044|nuclear transcription factor-Y alpha	NM_001110832|Nfya|18044|nuclear transcription factor-Y alpha	NM_010913|Nfya|18044|nuclear transcription factor-Y alpha
mm9_v1_chr2_+_144194646_144194805	0.037914	CAGUGCA	NM_001164813|Pet117|100048644|cytochrome c oxidase assembly factor-like	BC033464|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_001166640|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	BC031563|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein	NM_181417|Csrp2bp|228714|cysteine and glycine-rich protein 2 binding protein
mm9_v1_chr2_+_153067186_153067388	0.0374615	CAGUGCA	NM_080463|Pofut1|140484|protein O-fucosyltransferase 1	BC046295|Pofut1|140484|protein O-fucosyltransferase 1	AK135635|Pofut1|140484|protein O-fucosyltransferase 1	AK044629|Pofut1|140484|protein O-fucosyltransferase 1	AF375885|Pofut1|140484|protein O-fucosyltransferase 1	AK037857|Pofut1|140484|protein O-fucosyltransferase 1	AK081059|Pofut1|140484|protein O-fucosyltransferase 1	AK132301|Pofut1|140484|protein O-fucosyltransferase 1	AK170038|Pofut1|140484|protein O-fucosyltransferase 1
mm9_v1_chr8_-_122625167_122625371	0.0373395	CAGUGCA	AK170923|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK172462|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK089681|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK090333|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK170639|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK157968|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK041905|Zdhhc7|102193|zinc finger, DHHC domain containing 7	BC075666|Zdhhc7|102193|zinc finger, DHHC domain containing 7	NM_133967|Zdhhc7|102193|zinc finger, DHHC domain containing 7
mm9_v1_chr5_+_48763568_48763674	0.0372872	CAGUGCA	AK032498|Pacrgl|66768|PARK2 co-regulated-like	AK016966|Pacrgl|66768|PARK2 co-regulated-like	AK018101|Pacrgl|66768|PARK2 co-regulated-like	AK014276|Pacrgl|66768|PARK2 co-regulated-like	BC018481|Pacrgl|66768|PARK2 co-regulated-like	NM_025755|Pacrgl|66768|PARK2 co-regulated-like
mm9_v1_chr6_+_145159653_145159723	0.0369558	CAGUGCA	NM_001163628|Lyrm5|67636|LYR motif containing 5	AF412300|Lyrm5|67636|LYR motif containing 5	NM_133688|Lyrm5|67636|LYR motif containing 5	AY753325|Lyrm5|67636|LYR motif containing 5	AF412298|Lyrm5|67636|LYR motif containing 5	AK075835|Lyrm5|67636|LYR motif containing 5	AF412299|Lyrm5|67636|LYR motif containing 5	AK015530|Lyrm5|67636|LYR motif containing 5	AK046179|Lyrm5|67636|LYR motif containing 5	BC021522|Lyrm5|67636|LYR motif containing 5
mm9_v1_chrX_-_101609169_101609195	0.0368721	CAGUGCA	AK151967|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152535|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152816|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152946|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK084853|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK040069|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC151037|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	NM_009592|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC080769|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm9_v1_chr1_+_95700522_95700570	0.0368661	CAGUGCA	AK028397|Ing5|66262|inhibitor of growth family, member 5	NM_025454|Ing5|66262|inhibitor of growth family, member 5	AK007536|Ing5|66262|inhibitor of growth family, member 5	BC064674|Ing5|66262|inhibitor of growth family, member 5	AK009312|Ing5|66262|inhibitor of growth family, member 5	AK028010|Ing5|66262|inhibitor of growth family, member 5	AK145695|Ing5|66262|inhibitor of growth family, member 5
mm9_v1_chr9_-_86465373_86465470	0.0366934	CAGUGCA	BC138700|Pgm3|109785|phosphoglucomutase 3	AK051706|Pgm3|109785|phosphoglucomutase 3	AK032776|Pgm3|109785|phosphoglucomutase 3	AK049337|Pgm3|109785|phosphoglucomutase 3	AK169141|Pgm3|109785|phosphoglucomutase 3	AK169082|Pgm3|109785|phosphoglucomutase 3	AK169787|Pgm3|109785|phosphoglucomutase 3	AK165513|Pgm3|109785|phosphoglucomutase 3	AK013402|Pgm3|109785|phosphoglucomutase 3	AK036561|Pgm3|109785|phosphoglucomutase 3	AK049758|Pgm3|109785|phosphoglucomutase 3	AK028066|Pgm3|109785|phosphoglucomutase 3	AK160913|Pgm3|109785|phosphoglucomutase 3	AK043547|Pgm3|109785|phosphoglucomutase 3	NM_001163746|Pgm3|109785|phosphoglucomutase 3	NM_028352|Pgm3|109785|phosphoglucomutase 3
mm9_v1_chr18_+_53335981_53336033	0.036407	CAGUGCA	AK005470|Snx2|67804|sorting nexin 2	AK002692|Snx2|67804|sorting nexin 2	BC006960|Snx2|67804|sorting nexin 2	NM_026386|Snx2|67804|sorting nexin 2	AK010572|Snx2|67804|sorting nexin 2	AK075929|Snx2|67804|sorting nexin 2	AK153525|Snx2|67804|sorting nexin 2	CT010229|Snx2|67804|sorting nexin 2
mm9_v1_chr19_-_29722826_29722925	0.0363087	CAGUGCA	AK129447|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC086627|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK137206|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK037287|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC151181|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC151182|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	BC157914|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK041066|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	AK050284|Ermp1|226090|endoplasmic reticulum metallopeptidase 1	NM_001081213|Ermp1|226090|endoplasmic reticulum metallopeptidase 1
mm9_v1_chr19_+_8876985_8877044	0.0362794	CAGUGCA	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr7_+_28964486_28964515	0.0359217	CAGUGCA	BC019545|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_001037957|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_010092|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	Y18280|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm9_v1_chr18_-_66451420_66451491	0.0359178	CAGUGCA	AK039742|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC103803|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC152322|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK220435|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK035153|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK028377|Ccbe1|320924|collagen and calcium binding EGF domains 1	NM_178793|Ccbe1|320924|collagen and calcium binding EGF domains 1
mm9_v1_chr11_+_6289339_6289394	0.0359133	CAGUGCA	NM_028601|Zmiz2|52915|zinc finger, MIZ-type containing 2
mm9_v1_chr12_+_39506844_39506916	0.0353779	CAGUGCA	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr12_-_88541151_88541189	0.0351364	CAGUGCA	AK147378|Tmed8|382620|transmembrane emp24 domain containing 8	NM_001033475|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr11_-_21901563_21901712	0.0347533	CAGUGCA	BC057105|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK083671|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK050758|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK083434|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK042975|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK158588|Otx1|18423|orthodenticle homolog 1 (Drosophila)	NM_011023|Otx1|18423|orthodenticle homolog 1 (Drosophila)	AK049430|Otx1|18423|orthodenticle homolog 1 (Drosophila)
mm9_v1_chr2_-_37278415_37278506	0.0342866	CAGUGCA	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr7_-_30691111_30691122	0.0340433	CAGUGCA	AK147732|Zfp27|22689|zinc finger protein 27	NM_001037707|Zfp27|22689|zinc finger protein 27	NM_011754|Zfp27|22689|zinc finger protein 27
mm9_v1_chr6_-_13627853_13628000	0.0339963	CAGUGCA	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr2_+_24817941_24817990	0.0337008	CAGUGCA	AK152000|Wdr85|67228|WD repeat domain 85	AK153537|Wdr85|67228|WD repeat domain 85	NM_026044|Wdr85|67228|WD repeat domain 85	BC086486|Wdr85|67228|WD repeat domain 85	AK013297|Wdr85|67228|WD repeat domain 85	AK078448|Wdr85|67228|WD repeat domain 85	AK087998|Wdr85|67228|WD repeat domain 85	BC056962|Wdr85|67228|WD repeat domain 85
mm9_v1_chr17_-_26078825_26078928	0.033459	CAGUGCA	AK155173|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK016852|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK137390|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK033349|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK170431|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AB008895|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	BC014287|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	NM_011822|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK163680|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK169284|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q
mm9_v1_chr4_+_53644336_53644426	0.0330989	CAGUGCA	NM_001195284|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	NM_176966|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	AK140020|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	AK038893|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like	BC130265|Fsd1l|319636|fibronectin type III and SPRY domain containing 1-like
mm9_v1_chr8_-_13974679_13974776	0.0328331	CAGUGCA	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chr4_+_125781197_125781263	0.0326296	CAGUGCA	NM_001145827|Stk40|74178|serine/threonine kinase 40	NM_028800|Stk40|74178|serine/threonine kinase 40	AK154780|Stk40|74178|serine/threonine kinase 40	AY336057|Stk40|74178|serine/threonine kinase 40	BC046981|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr16_+_52031661_52031695	0.0324508	CAGUGCA	NM_001033238|Cblb|208650|Casitas B-lineage lymphoma b	AK147367|Cblb|208650|Casitas B-lineage lymphoma b
mm9_v1_chr15_-_12754300_12754424	0.0318747	CAGUGCA	AK036721|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC119058|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC137759|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK144748|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK037867|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC028769|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC099607|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK081625|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK054133|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK171821|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK163412|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK035859|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK038561|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK078182|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK020074|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK152195|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	NM_001166360|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	NM_029998|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK162187|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene
mm9_v1_chr17_-_46841925_46841975	0.0311506	CAGUGCA	AK154050|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	NM_009358|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr15_+_83393975_83394050	0.0308679	CAGUGCA	NM_009775|Tspo|12257|translocator protein	AK151824|Tspo|12257|translocator protein	AK153273|Tspo|12257|translocator protein	AK165822|Tspo|12257|translocator protein	AK166125|Tspo|12257|translocator protein	AK151569|Tspo|12257|translocator protein	AK156489|Tspo|12257|translocator protein	AK172384|Tspo|12257|translocator protein	AK149743|Tspo|12257|translocator protein	AK151421|Tspo|12257|translocator protein	AK152860|Tspo|12257|translocator protein	AK153159|Tspo|12257|translocator protein	AK165450|Tspo|12257|translocator protein	AK150516|Tspo|12257|translocator protein	AK152082|Tspo|12257|translocator protein	AK152827|Tspo|12257|translocator protein	BC002055|Tspo|12257|translocator protein	D21207|Tspo|12257|translocator protein
mm9_v1_chr8_-_112261607_112261664	0.0307268	CAGUGCA	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr5_+_116081897_116082155	0.0306476	CAGUGCA	BC056466|Rab35|77407|RAB35, member RAS oncogene family	NM_198163|Rab35|77407|RAB35, member RAS oncogene family	AK156576|Rab35|77407|RAB35, member RAS oncogene family	AB232631|Rab35|77407|RAB35, member RAS oncogene family
mm9_v1_chr17_-_17761403_17761607	0.0301289	CAGUGCA	BC120925|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC120926|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK029094|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK036967|Lnpep|240028|leucyl/cystinyl aminopeptidase	NM_172827|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC066791|Lnpep|240028|leucyl/cystinyl aminopeptidase
mm9_v1_chr9_+_43552516_43552726	0.0298367	CAGUGCA	BC060694|Pvrl1|58235|poliovirus receptor-related 1	NM_021424|Pvrl1|58235|poliovirus receptor-related 1	AF297665|Pvrl1|58235|poliovirus receptor-related 1	AF239762|Pvrl1|58235|poliovirus receptor-related 1	AF270977|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr11_-_68770359_68770398	0.0296513	CAGUGCA	BC089365|Arhgef15|442801|Rho guanine nucleotide exchange factor (GEF) 15	NM_177566|Arhgef15|442801|Rho guanine nucleotide exchange factor (GEF) 15
mm9_v1_chr2_-_115890247_115890356	0.0294862	CAGUGCA	AK158513|Meis2|17536|Meis homeobox 2	AK158839|Meis2|17536|Meis homeobox 2	NM_001159569|Meis2|17536|Meis homeobox 2	NM_001159570|Meis2|17536|Meis homeobox 2
mm9_v1_chr8_-_42219037_42219129	0.0289542	CAGUGCA	AK040710|Mtus1|102103|mitochondrial tumor suppressor 1	AK143781|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005863|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr4_+_14791353_14791554	0.0287953	CAGUGCA	AK049213|Tmem55a|72519|transmembrane protein 55A	NM_028264|Tmem55a|72519|transmembrane protein 55A	AK033845|Tmem55a|72519|transmembrane protein 55A	AK012054|Tmem55a|72519|transmembrane protein 55A	AX775959|Tmem55a|72519|transmembrane protein 55A	BC021435|Tmem55a|72519|transmembrane protein 55A	AK206695|Tmem55a|72519|transmembrane protein 55A
mm9_v1_chr12_-_5382487_5382487	0.0286895	CAGUGCA	BC065168|Klhl29|208439|kelch-like 29 (Drosophila)	NM_001164493|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chrX_+_33652066_33652189	0.0285688	CAGUGCA	AK154675|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK089984|Il13ra1|16164|interleukin 13 receptor, alpha 1	BC052425|Il13ra1|16164|interleukin 13 receptor, alpha 1	NM_133990|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK080147|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK143292|Il13ra1|16164|interleukin 13 receptor, alpha 1	AK082889|Il13ra1|16164|interleukin 13 receptor, alpha 1	BC059939|Il13ra1|16164|interleukin 13 receptor, alpha 1
mm9_v1_chr11_+_77306825_77306918	0.0274901	CAGUGCA	BC079870|Git1|216963|G protein-coupled receptor kinase-interactor 1	NM_001004144|Git1|216963|G protein-coupled receptor kinase-interactor 1
mm9_v1_chr16_-_18089085_18089282	0.0273212	CAGUGCA	BC125327|Prodh|19125|proline dehydrogenase	BC008548|Prodh|19125|proline dehydrogenase	U80020|Prodh|19125|proline dehydrogenase	AF120279|Prodh|19125|proline dehydrogenase	AK144068|Prodh|19125|proline dehydrogenase	AK085938|Prodh|19125|proline dehydrogenase	NM_011172|Prodh|19125|proline dehydrogenase
mm9_v1_chr11_-_104303565_104303604	0.0269641	CAGUGCA	AK153679|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene	AK122484|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene	NM_001081045|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene
mm9_v1_chr6_-_92484838_92484854	0.0265993	CAGUGCA	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr4_+_115747945_115748197	0.0263751	CAGUGCA	AK154613|Lrrc41|230654|leucine rich repeat containing 41	AK170641|Lrrc41|230654|leucine rich repeat containing 41	AK085717|Lrrc41|230654|leucine rich repeat containing 41	AK163171|Lrrc41|230654|leucine rich repeat containing 41	BC022976|Lrrc41|230654|leucine rich repeat containing 41	NM_153521|Lrrc41|230654|leucine rich repeat containing 41	BC024940|Lrrc41|230654|leucine rich repeat containing 41	AK052762|Lrrc41|230654|leucine rich repeat containing 41
mm9_v1_chr4_+_13711928_13711928	0.0259867	CAGUGCA	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chrX_-_156576261_156576298	0.0258794	CAGUGCA	BC007142|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	NM_008810|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK148459|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK167987|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr3_+_89240625_89240684	0.0255078	CAGUGCA	NM_146131|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028858|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159422|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159448|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK160103|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159633|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028754|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC027771|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK170318|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC034200|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1
mm9_v1_chr16_-_30587549_30587690	0.0254765	CAGUGCA	AK146895|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK030940|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK145186|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK135345|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK078501|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	BC043724|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	NM_178069|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK132527|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)
mm9_v1_chr8_-_42127242_42127289	0.0252642	CAGUGCA	AK030510|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005865|Mtus1|102103|mitochondrial tumor suppressor 1	AY626781|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr2_-_120178819_120178881	0.0251724	CAGUGCA	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr17_-_28487544_28487766	0.0246773	CAGUGCA	AK087649|Tead3|21678|TEA domain family member 3	NM_001098226|Tead3|21678|TEA domain family member 3	AK143551|Tead3|21678|TEA domain family member 3	AK031555|Tead3|21678|TEA domain family member 3	D87964|Tead3|21678|TEA domain family member 3	NM_011566|Tead3|21678|TEA domain family member 3
mm9_v1_chr2_-_17970075_17970075	0.0241101	CAGUGCA	BC050860|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene	NM_028317|2810030E01Rik|72668|RIKEN cDNA 2810030E01 gene
mm9_v1_chr14_+_21167383_21167391	0.0237952	CAGUGCA	AK031973|Fam149b|105428|family with sequence similarity 149, member B	NM_001177633|Fam149b|105428|family with sequence similarity 149, member B	NM_172379|Fam149b|105428|family with sequence similarity 149, member B
mm9_v1_chr9_+_32503600_32503674	0.0235302	CAGUGCA	NM_001038642|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	NM_011808|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	BC010588|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK168247|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain
mm9_v1_chr18_-_46756837_46757206	0.0228847	CAGUGCA	AK202734|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK180182|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK029576|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK076210|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK147412|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK013936|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	NM_025698|Tmed7|66676|transmembrane emp24 protein transport domain containing 7
mm9_v1_chr12_+_112776311_112776423	0.0223069	CAGUGCA	NM_173363|Eif5|217869|eukaryotic translation initiation factor 5	NM_178041|Eif5|217869|eukaryotic translation initiation factor 5	AK161554|Eif5|217869|eukaryotic translation initiation factor 5	BC039275|Eif5|217869|eukaryotic translation initiation factor 5
mm9_v1_chr16_-_31081444_31081521	0.0221753	CAGUGCA	BC031419|AI480653|268880|expressed sequence AI480653	AK166259|AI480653|268880|expressed sequence AI480653	AK154256|AI480653|268880|expressed sequence AI480653	NM_198626|AI480653|268880|expressed sequence AI480653
mm9_v1_chr10_-_79600131_79600131	0.0218986	CAGUGCA	BC052075|Dos|100503659|downstream of Stk11	NM_001195268|Dos|100503659|downstream of Stk11
mm9_v1_chr8_-_18950870_18950974	0.0218153	CAGUGCA	BC098477|Xkr5|319581|X Kell blood group precursor-related family, member 5	AK045098|Xkr5|319581|X Kell blood group precursor-related family, member 5	AK030692|Xkr5|319581|X Kell blood group precursor-related family, member 5	NM_001113350|Xkr5|319581|X Kell blood group precursor-related family, member 5	NM_176951|Xkr5|319581|X Kell blood group precursor-related family, member 5	AY534251|Xkr5|319581|X Kell blood group precursor-related family, member 5
mm9_v1_chr4_+_115511802_115511871	0.0216953	CAGUGCA	AK141298|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK010697|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK169982|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	Y11091|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK155934|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	NM_021461|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	BC021369|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1
mm9_v1_chr12_+_80130149_80130201	0.0216486	CAGUGCA	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr3_-_84024766_84024812	0.0214579	CAGUGCA	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr12_+_37835132_37835270	0.0209	CAGUGCA	AK028352|Meox2|17286|mesenchyme homeobox 2	NM_008584|Meox2|17286|mesenchyme homeobox 2	AK031152|Meox2|17286|mesenchyme homeobox 2	BC002076|Meox2|17286|mesenchyme homeobox 2	AK142690|Meox2|17286|mesenchyme homeobox 2	Z16406|Meox2|17286|mesenchyme homeobox 2
mm9_v1_chr11_-_96690784_96690815	0.0207457	CAGUGCA	AK154167|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK085935|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130450|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr5_+_28643698_28643741	0.0206483	CAGUGCA	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chr8_-_42140113_42140147	0.0203234	CAGUGCA	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr12_-_70782807_70782838	0.0200485	CAGUGCA	NM_001135559|Sos2|20663|son of sevenless homolog 2 (Drosophila)
mm9_v1_chr4_+_154783298_154783366	0.0198658	CAGUGCA	AK008257|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	NM_001166029|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	NM_177674|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	AK134858|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene	BC056495|2010015L04Rik|544678|RIKEN cDNA 2010015L04 gene
mm9_v1_chr15_-_50721552_50721725	0.0197512	CAGUGCA	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr19_+_5637459_5637550	0.019469	CAGUGCA	AK155321|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK158072|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	BC094053|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	NM_009045|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr13_-_69138418_69138432	0.0194218	CAGUGCA	AK132312|Adcy2|210044|adenylate cyclase 2	NM_153534|Adcy2|210044|adenylate cyclase 2
mm9_v1_chr19_-_24551914_24551976	0.0193767	CAGUGCA	AK018219|Fam122a|68034|family with sequence similarity 122, member A	BC028637|Fam122a|68034|family with sequence similarity 122, member A	AK172089|Fam122a|68034|family with sequence similarity 122, member A	AK077654|Fam122a|68034|family with sequence similarity 122, member A	AK011741|Fam122a|68034|family with sequence similarity 122, member A	BC083062|Fam122a|68034|family with sequence similarity 122, member A	AK005219|Fam122a|68034|family with sequence similarity 122, member A	AK033646|Fam122a|68034|family with sequence similarity 122, member A	NM_026520|Fam122a|68034|family with sequence similarity 122, member A
mm9_v1_chr5_+_123794456_123794498	0.0192481	CAGUGCA	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr11_-_106781995_106782028	0.019229	CAGUGCA	AK012060|Smurf2|66313|SMAD specific E3 ubiquitin protein ligase 2	NM_025481|Smurf2|66313|SMAD specific E3 ubiquitin protein ligase 2
mm9_v1_chr14_+_117324518_117324572	0.0190763	CAGUGCA	AK164668|Gpc6|23888|glypican 6	AK135442|Gpc6|23888|glypican 6	NM_001079844|Gpc6|23888|glypican 6	NM_011821|Gpc6|23888|glypican 6
mm9_v1_chr14_+_51710751_51710835	0.0190467	CAGUGCA	NM_001161731|Ang|11727|angiogenin, ribonuclease, RNase A family, 5	NM_021472|Rnase4|58809|ribonuclease, RNase A family 4	AK076504|Rnase4|58809|ribonuclease, RNase A family 4	BC066843|Rnase4|58809|ribonuclease, RNase A family 4	AK171251|Ang|11727|angiogenin, ribonuclease, RNase A family, 5
mm9_v1_chr9_-_106691395_106691543	0.0186168	CAGUGCA	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr5_-_147606370_147606581	0.0183297	CAGUGCA	AK035629|Usp12|22217|ubiquitin specific peptidase 12	AK167153|Usp12|22217|ubiquitin specific peptidase 12	BC068136|Usp12|22217|ubiquitin specific peptidase 12	NM_011669|Usp12|22217|ubiquitin specific peptidase 12	AK006739|Usp12|22217|ubiquitin specific peptidase 12
mm9_v1_chr9_-_108962219_108962241	0.0183242	CAGUGCA	AF319574|Trex1|22040|three prime repair exonuclease 1	AF151106|Trex1|22040|three prime repair exonuclease 1	NM_011637|Trex1|22040|three prime repair exonuclease 1	BC011133|Trex1|22040|three prime repair exonuclease 1
mm9_v1_chr3_-_94386590_94386623	0.0183032	CAGUGCA	AK147452|Snx27|76742|sorting nexin family member 27	NM_001082484|Snx27|76742|sorting nexin family member 27	NM_029721|Snx27|76742|sorting nexin family member 27
mm9_v1_chr3_-_32264572_32264614	0.0179565	CAGUGCA	NM_009517|Zmat3|22401|zinc finger matrin type 3	BC023726|Zmat3|22401|zinc finger matrin type 3
mm9_v1_chr4_+_137150067_137150162	0.0177412	CAGUGCA	AK166158|Usp48|170707|ubiquitin specific peptidase 48	NM_130879|Usp48|170707|ubiquitin specific peptidase 48	AK220190|Usp48|170707|ubiquitin specific peptidase 48	BC021769|Usp48|170707|ubiquitin specific peptidase 48	AK052297|Usp48|170707|ubiquitin specific peptidase 48
mm9_v1_chr14_+_58691522_58691522	0.0175173	CAGUGCA	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr13_+_81022644_81022695	0.0174125	CAGUGCA	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr4_-_109959366_109959438	0.0170514	CAGUGCA	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr5_-_52581705_52581765	0.0168037	CAGUGCA	BC003745|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	BC100343|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK146441|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK145983|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151015|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151757|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK149869|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168323|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168835|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK169174|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_001042620|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_007839|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr3_+_96500294_96500403	0.0167328	CAGUGCA	NM_146135|Pias3|229615|protein inhibitor of activated STAT 3	AK040619|Pias3|229615|protein inhibitor of activated STAT 3	AK077551|Pias3|229615|protein inhibitor of activated STAT 3	AK085503|Pias3|229615|protein inhibitor of activated STAT 3	BC023128|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr2_+_128689667_128689808	0.016648	CAGUGCA	NM_024237|Fbln7|70370|fibulin 7	AK005465|Fbln7|70370|fibulin 7	BC095941|Fbln7|70370|fibulin 7	EF668007|Fbln7|70370|fibulin 7
mm9_v1_chr5_-_24414236_24414326	0.0161443	CAGUGCA	AY348864|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	AK165834|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	AK010703|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_001170555|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_001170556|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr5_-_123438517_123438541	0.016107	CAGUGCA	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr1_-_74170987_74171037	0.0160975	CAGUGCA	NM_027884|Tns1|21961|tensin 1
mm9_v1_chr3_-_89856250_89856452	0.0159829	CAGUGCA	AK030218|Ubap2l|74383|ubiquitin associated protein 2-like	AK031934|Ubap2l|74383|ubiquitin associated protein 2-like	BC023906|Ubap2l|74383|ubiquitin associated protein 2-like	BC029075|Ubap2l|74383|ubiquitin associated protein 2-like	AK088702|Ubap2l|74383|ubiquitin associated protein 2-like	AF276967|Ubap2l|74383|ubiquitin associated protein 2-like	AK048286|Ubap2l|74383|ubiquitin associated protein 2-like	AK079895|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165983|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165985|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165987|Ubap2l|74383|ubiquitin associated protein 2-like	NM_028475|Ubap2l|74383|ubiquitin associated protein 2-like	NM_153489|Ubap2l|74383|ubiquitin associated protein 2-like	AK014274|Ubap2l|74383|ubiquitin associated protein 2-like	AK152135|Ubap2l|74383|ubiquitin associated protein 2-like	AK040551|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165984|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165986|Ubap2l|74383|ubiquitin associated protein 2-like	NM_001165988|Ubap2l|74383|ubiquitin associated protein 2-like
mm9_v1_chr5_-_63157309_63157425	0.0159772	CAGUGCA	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr12_-_77811533_77811533	0.0157182	CAGUGCA	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr6_+_17413930_17414106	0.0155955	CAGUGCA	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr2_-_62249934_62250287	0.0152737	CAGUGCA	X58384|Dpp4|13482|dipeptidylpeptidase 4	AK040409|Dpp4|13482|dipeptidylpeptidase 4	BC022183|Dpp4|13482|dipeptidylpeptidase 4	AK163085|Dpp4|13482|dipeptidylpeptidase 4	NM_001159543|Dpp4|13482|dipeptidylpeptidase 4	NM_010074|Dpp4|13482|dipeptidylpeptidase 4
mm9_v1_chr2_-_127410404_127410441	0.0150707	CAGUGCA	BC052876|Zfp661|72180|zinc finger protein 661	AK033122|Zfp661|72180|zinc finger protein 661	NM_001111029|Zfp661|72180|zinc finger protein 661	NM_028141|Zfp661|72180|zinc finger protein 661
mm9_v1_chr2_-_73367455_73367546	0.0145681	CAGUGCA	BC049788|Wipf1|215280|WAS/WASL interacting protein family, member 1	NM_153138|Wipf1|215280|WAS/WASL interacting protein family, member 1
mm9_v1_chr18_-_35862744_35862797	0.0144812	CAGUGCA	AK012521|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	BC026452|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	AK030483|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18	NM_029669|Dnajc18|76594|DnaJ (Hsp40) homolog, subfamily C, member 18
mm9_v1_chr10_+_25949512_25949512	0.0143224	CAGUGCA	AK082201|Samd3|268288|sterile alpha motif domain containing 3	BC150876|Samd3|268288|sterile alpha motif domain containing 3	NM_001013766|Samd3|268288|sterile alpha motif domain containing 3	NM_001115154|Samd3|268288|sterile alpha motif domain containing 3
mm9_v1_chr4_-_33037783_33037814	0.0142029	CAGUGCA	AK135024|Ankrd6|140577|ankyrin repeat domain 6	NM_001012451|Ankrd6|140577|ankyrin repeat domain 6
mm9_v1_chr2_+_27532692_27532866	0.0136044	CAGUGCA	AK144675|Rxra|20181|retinoid X receptor alpha	NM_011305|Rxra|20181|retinoid X receptor alpha	M84817|Rxra|20181|retinoid X receptor alpha	BC138800|Rxra|20181|retinoid X receptor alpha	BC138802|Rxra|20181|retinoid X receptor alpha	X66223|Rxra|20181|retinoid X receptor alpha	AK031034|Rxra|20181|retinoid X receptor alpha
mm9_v1_chr4_+_147314951_147315041	0.0134775	CAGUGCA	AK011059|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK153761|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	NM_029841|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	BC012878|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene	AK173332|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr2_+_152987036_152987075	0.0133136	CAGUGCA	NM_133847|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK083541|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC116320|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK035622|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr7_-_109213606_109213687	0.0131837	CAGUGCA	AK078509|Rnf121|75212|ring finger protein 121	BC022686|Rnf121|75212|ring finger protein 121	NM_029211|Rnf121|75212|ring finger protein 121	AK168821|Rnf121|75212|ring finger protein 121	AK169089|Rnf121|75212|ring finger protein 121	AK159260|Rnf121|75212|ring finger protein 121
mm9_v1_chr2_-_115890747_115890848	0.0130094	CAGUGCA	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr3_-_157699581_157699608	0.012826	CAGUGCA	NM_001093752|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr11_-_90252228_90252237	0.0122393	CAGUGCA	NM_172563|Hlf|217082|hepatic leukemia factor
mm9_v1_chr8_-_87370795_87370829	0.0118255	CAGUGCA	NM_007591|Calr|12317|calreticulin
mm9_v1_chr13_-_38085986_38086062	0.0111488	CAGUGCA	BC011255|Ssr1|107513|signal sequence receptor, alpha	AK010884|Ssr1|107513|signal sequence receptor, alpha	AK167793|Ssr1|107513|signal sequence receptor, alpha	AK160285|Ssr1|107513|signal sequence receptor, alpha	AF326229|Ssr1|107513|signal sequence receptor, alpha	AF395811|Ssr1|107513|signal sequence receptor, alpha	AY993942|Ssr1|107513|signal sequence receptor, alpha	AK166235|Ssr1|107513|signal sequence receptor, alpha	AK031538|Ssr1|107513|signal sequence receptor, alpha	AB009295|Ssr1|107513|signal sequence receptor, alpha	NM_025965|Ssr1|107513|signal sequence receptor, alpha
mm9_v1_chr3_-_126646303_126646303	0.0109451	CAGUGCA	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chr14_+_31638767_31638861	0.0109295	CAGUGCA	AK007740|Tmem110|69179|transmembrane protein 110	NM_028839|Tmem110|69179|transmembrane protein 110	AK009341|Tmem110|69179|transmembrane protein 110	AK076341|Tmem110|69179|transmembrane protein 110	AK149088|Tmem110|69179|transmembrane protein 110	AK155257|Tmem110|69179|transmembrane protein 110
mm9_v1_chr10_+_115738429_115738633	0.0108405	CAGUGCA	AK147439|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AK147668|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	NM_029928|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AY077755|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC141006|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC145111|Ptprb|19263|protein tyrosine phosphatase, receptor type, B
mm9_v1_chr2_+_180921963_180922240	0.0103517	CAGUGCA	AK002602|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC058516|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK154758|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK166314|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC100439|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK003282|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	NM_025598|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK012327|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK012037|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK014211|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC029225|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	BC091753|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene	AK012545|Ppdpf|66496|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
mm9_v1_chr4_-_82970054_82970102	0.0102601	CAGUGCA	BC151021|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK007856|Ttc39b|69863|tetratricopeptide repeat domain 39B	AK037208|Ttc39b|69863|tetratricopeptide repeat domain 39B	NM_027238|Ttc39b|69863|tetratricopeptide repeat domain 39B
mm9_v1_chr18_+_80403581_80403591	0.00983203	CAGUGCA	BC025053|Txnl4a|27366|thioredoxin-like 4A	NM_178604|Txnl4a|27366|thioredoxin-like 4A	AK171121|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr2_+_4322020_4322021	0.00977812	CAGUGCA	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr16_+_4594703_4594731	0.00953338	CAGUGCA	NM_031184|Glis2|83396|GLIS family zinc finger 2
mm9_v1_chr18_-_77952721_77952748	0.00953243	CAGUGCA	AK046785|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK033209|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK163840|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_178670|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr7_-_120512849_120512864	0.00929638	CAGUGCA	BC050781|Btbd10|68815|BTB (POZ) domain containing 10	NM_133700|Btbd10|68815|BTB (POZ) domain containing 10
mm9_v1_chr11_-_4965279_4965341	0.00924659	CAGUGCA	BC031785|Gas2l1|78926|growth arrest-specific 2 like 1	AK082864|Gas2l1|78926|growth arrest-specific 2 like 1	AK019661|Gas2l1|78926|growth arrest-specific 2 like 1	AK052229|Gas2l1|78926|growth arrest-specific 2 like 1	NM_001190406|Gas2l1|78926|growth arrest-specific 2 like 1	NM_001190408|Gas2l1|78926|growth arrest-specific 2 like 1	NM_030228|Gas2l1|78926|growth arrest-specific 2 like 1	NM_144560|Gas2l1|78926|growth arrest-specific 2 like 1
mm9_v1_chr4_-_94269846_94269942	0.00860994	CAGUGCA	BC139773|Plaa|18786|phospholipase A2, activating protein	AK075934|Plaa|18786|phospholipase A2, activating protein	BC139355|Plaa|18786|phospholipase A2, activating protein	BC139356|Plaa|18786|phospholipase A2, activating protein	NM_172695|Plaa|18786|phospholipase A2, activating protein	AK019070|Plaa|18786|phospholipase A2, activating protein
mm9_v1_chr8_+_107749072_107749302	0.00859789	CAGUGCA	AK156120|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	NM_145604|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC057919|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	AK051965|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	AK166937|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC066141|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC066826|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene	BC006874|D230025D16Rik|234678|RIKEN cDNA D230025D16 gene
mm9_v1_chr11_-_97049185_97049278	0.00843423	CAGUGCA	BC055115|Kpnb1|16211|karyopherin (importin) beta 1	AK077709|Kpnb1|16211|karyopherin (importin) beta 1	NM_008379|Kpnb1|16211|karyopherin (importin) beta 1	AK147175|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr9_-_54509658_54509691	0.00838277	CAGUGCA	AB050554|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	NM_053178|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr13_+_42147389_42147402	0.00817076	CAGUGCA	AK039808|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1	NM_007772|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1
mm9_v1_chr10_+_127114119_127114144	0.00798998	CAGUGCA	BC030440|Tmem194|210035|transmembrane protein 194	NM_001113211|Tmem194|210035|transmembrane protein 194	NM_173732|Tmem194|210035|transmembrane protein 194	AK129110|Tmem194|210035|transmembrane protein 194	AK090031|Tmem194|210035|transmembrane protein 194
mm9_v1_chr5_-_5694325_5694567	0.00775227	CAGUGCA	BC043459|Steap2|74051|six transmembrane epithelial antigen of prostate 2	BC150881|Steap2|74051|six transmembrane epithelial antigen of prostate 2	BC150889|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK166162|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK052981|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_028734|Steap2|74051|six transmembrane epithelial antigen of prostate 2
mm9_v1_chr8_-_26212242_26212282	0.0077182	CAGUGCA	AK042324|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AK078212|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	NM_031257|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr15_-_99602827_99602945	0.00764127	CAGUGCA	AK146417|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145589|Lass5|71949|LAG1 homolog, ceramide synthase 5	AY029533|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK075694|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK146220|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK145762|Lass5|71949|LAG1 homolog, ceramide synthase 5	AK010241|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC043059|Lass5|71949|LAG1 homolog, ceramide synthase 5	BC046797|Lass5|71949|LAG1 homolog, ceramide synthase 5	NM_028015|Lass5|71949|LAG1 homolog, ceramide synthase 5
mm9_v1_chr4_+_53838895_53838980	0.00733325	CAGUGCA	NM_028053|Tmem38b|52076|transmembrane protein 38B	AK005479|Tmem38b|52076|transmembrane protein 38B	BC011072|Tmem38b|52076|transmembrane protein 38B	AK150377|Tmem38b|52076|transmembrane protein 38B	AK150892|Tmem38b|52076|transmembrane protein 38B	AK153075|Tmem38b|52076|transmembrane protein 38B	AB261159|Tmem38b|52076|transmembrane protein 38B
mm9_v1_chr8_+_109817355_109817761	0.0073044	CAGUGCA	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr6_-_129422702_129422806	0.00722315	CAGUGCA	AY534909|Clec7a|56644|C-type lectin domain family 7, member a	BC027742|Clec7a|56644|C-type lectin domain family 7, member a	AF262985|Clec7a|56644|C-type lectin domain family 7, member a	NM_020008|Clec7a|56644|C-type lectin domain family 7, member a
mm9_v1_chr18_-_77803843_77803942	0.00718271	CAGUGCA	DQ465971|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_001164504|Rnf165|225743|ring finger protein 165
mm9_v1_chr6_+_117118552_117118673	0.00711435	CAGUGCA	NM_001012477|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_013655|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_021704|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK157553|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK045092|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK075596|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43804|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43805|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12029|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12030|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC046827|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC006640|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC020297|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC029335|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D21072|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	S74318|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	CT010389|Cxcl12|20315|chemokine (C-X-C motif) ligand 12
mm9_v1_chr12_+_4082573_4082658	0.00704753	CAGUGCA	NM_153082|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC051140|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	AK049300|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC042643|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr4_-_44181148_44181210	0.00698368	CAGUGCA	AK044324|Rnf38|73469|ring finger protein 38	NM_001038993|Rnf38|73469|ring finger protein 38	AK147608|Rnf38|73469|ring finger protein 38
mm9_v1_chr3_-_88229007_88229060	0.00697016	CAGUGCA	BC052771|Slc25a44|229517|solute carrier family 25, member 44	AK166331|Slc25a44|229517|solute carrier family 25, member 44	AK169886|Slc25a44|229517|solute carrier family 25, member 44	AK044648|Slc25a44|229517|solute carrier family 25, member 44	AK046586|Slc25a44|229517|solute carrier family 25, member 44	AK079532|Slc25a44|229517|solute carrier family 25, member 44	AK165159|Slc25a44|229517|solute carrier family 25, member 44	AK083470|Slc25a44|229517|solute carrier family 25, member 44	AK083273|Slc25a44|229517|solute carrier family 25, member 44	AK144731|Slc25a44|229517|solute carrier family 25, member 44	AK166011|Slc25a44|229517|solute carrier family 25, member 44	AK168955|Slc25a44|229517|solute carrier family 25, member 44	AK032960|Slc25a44|229517|solute carrier family 25, member 44	AK134914|Slc25a44|229517|solute carrier family 25, member 44	NM_001145876|Slc25a44|229517|solute carrier family 25, member 44	NM_001145877|Slc25a44|229517|solute carrier family 25, member 44	NM_178696|Slc25a44|229517|solute carrier family 25, member 44
mm9_v1_chr9_-_20781206_20781236	0.00694841	CAGUGCA	AK170436|S1pr2|14739|sphingosine-1-phosphate receptor 2	AK085114|S1pr2|14739|sphingosine-1-phosphate receptor 2	NM_010333|S1pr2|14739|sphingosine-1-phosphate receptor 2
mm9_v1_chr11_+_72609717_72609729	0.00689167	CAGUGCA	AK158924|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1	NM_001045536|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1
mm9_v1_chr2_-_52601140_52601264	0.00673432	CAGUGCA	AK214650|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK004604|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	NM_019667|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AB012611|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK044230|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK159699|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK017668|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK078244|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK168729|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	BC013818|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	DQ141211|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	AK035789|Stam2|56324|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm9_v1_chr4_-_133843139_133843188	0.00659447	CAGUGCA	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr3_+_151873407_151873495	0.0064622	CAGUGCA	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr4_+_119487105_119487332	0.00637694	CAGUGCA	AY454348|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC058336|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	NM_010657|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454345|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr16_+_23224804_23224864	0.00634865	CAGUGCA	BC092222|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1	NM_145933|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1
mm9_v1_chr10_+_61143056_61143106	0.00612357	CAGUGCA	AK157843|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK168175|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	AK159239|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	NM_009120|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	BC005549|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)	L20294|Sar1a|20224|SAR1 gene homolog A (S. cerevisiae)
mm9_v1_chr5_+_23606402_23606481	0.00576805	CAGUGCA	NM_001161800|Klhl7|52323|kelch-like 7 (Drosophila)	NM_026448|Klhl7|52323|kelch-like 7 (Drosophila)	AK083358|Klhl7|52323|kelch-like 7 (Drosophila)	AK089072|Klhl7|52323|kelch-like 7 (Drosophila)	AK012326|Klhl7|52323|kelch-like 7 (Drosophila)	BC029154|Klhl7|52323|kelch-like 7 (Drosophila)	AK082520|Klhl7|52323|kelch-like 7 (Drosophila)
mm9_v1_chr7_-_4990023_4990047	0.00565538	CAGUGCA	BC147237|Zfp784|654801|zinc finger protein 784	BC147238|Zfp784|654801|zinc finger protein 784	AK050452|Zfp784|654801|zinc finger protein 784	AK161791|Zfp784|654801|zinc finger protein 784	NM_001039532|Zfp784|654801|zinc finger protein 784
mm9_v1_chr2_+_121239637_121239649	0.00564951	CAGUGCA	NM_007952|Pdia3|14827|protein disulfide isomerase associated 3
mm9_v1_chr1_+_179374783_179374796	0.00554207	CAGUGCA	BC089333|Zfp238|30928|zinc finger protein 238	NM_001012330|Zfp238|30928|zinc finger protein 238
mm9_v1_chr1_-_135817945_135817982	0.00551254	CAGUGCA	AK037150|Prelp|116847|proline arginine-rich end leucine-rich repeat	BC019775|Prelp|116847|proline arginine-rich end leucine-rich repeat	AK047480|Prelp|116847|proline arginine-rich end leucine-rich repeat	NM_054077|Prelp|116847|proline arginine-rich end leucine-rich repeat
mm9_v1_chr12_+_106270857_106270981	0.00509869	CAGUGCA	BC050937|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	BC058371|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK009158|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK013761|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	NM_028419|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK050883|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	DQ083330|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)
mm9_v1_chr1_+_194999662_194999887	0.00507786	CAGUGCA	AK077339|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	NM_001160360|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	NM_001160359|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	NM_181048|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	AK037364|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	BC055955|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	AK047686|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene	AK084448|A130010J15Rik|319266|RIKEN cDNA A130010J15 gene
mm9_v1_chr2_-_84265422_84265424	0.00503935	CAGUGCA	AK137210|Calcrl|54598|calcitonin receptor-like	NM_018782|Calcrl|54598|calcitonin receptor-like	AB015595|Calcrl|54598|calcitonin receptor-like
mm9_v1_chr12_-_71203819_71203840	0.00463123	CAGUGCA	AY515727|Nin|18080|ninein	NM_001081453|Nin|18080|ninein
mm9_v1_chr3_-_108830522_108830608	0.00454486	CAGUGCA	NM_001163567|Fam102b|329739|family with sequence similarity 102, member B
mm9_v1_chr13_-_54789548_54789560	0.00451648	CAGUGCA	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr10_+_52137324_52137453	0.0042833	CAGUGCA	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr5_+_89149887_89150001	0.00409378	CAGUGCA	AK045695|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK162120|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	NM_026735|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK150016|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK077320|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK172291|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104402|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	BC104403|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)	AK003346|Mobkl1a|68473|MOB1, Mps One Binder kinase activator-like 1A (yeast)
mm9_v1_chr7_+_148317160_148317300	0.0037984	CAGUGCA	AK036368|Ptdss2|27388|phosphatidylserine synthase 2	NM_013782|Ptdss2|27388|phosphatidylserine synthase 2	AK031906|Ptdss2|27388|phosphatidylserine synthase 2	AK048026|Ptdss2|27388|phosphatidylserine synthase 2	AK081275|Ptdss2|27388|phosphatidylserine synthase 2	AK021249|Ptdss2|27388|phosphatidylserine synthase 2	AK032686|Ptdss2|27388|phosphatidylserine synthase 2	AK137415|Ptdss2|27388|phosphatidylserine synthase 2	BC053517|Ptdss2|27388|phosphatidylserine synthase 2	AF099053|Ptdss2|27388|phosphatidylserine synthase 2
mm9_v1_chr2_+_177927788_177927833	0.00379628	CAGUGCA	AJ632222|Phactr3|74189|phosphatase and actin regulator 3	NM_001007154|Phactr3|74189|phosphatase and actin regulator 3	AK038449|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr4_-_63681749_63681759	0.00326033	CAGUGCA	BC117979|Tnc|21923|tenascin C	BC117980|Tnc|21923|tenascin C	NM_011607|Tnc|21923|tenascin C	X56304|Tnc|21923|tenascin C
mm9_v1_chr9_+_56712850_56712966	0.0031344	CAGUGCA	NM_139001|Cspg4|121021|chondroitin sulfate proteoglycan 4	AF352400|Cspg4|121021|chondroitin sulfate proteoglycan 4
mm9_v1_chr19_-_18706239_18706339	0.00304196	CAGUGCA	AK008123|Ostf1|20409|osteoclast stimulating factor 1	AK008467|Ostf1|20409|osteoclast stimulating factor 1	U58888|Ostf1|20409|osteoclast stimulating factor 1	AK145949|Ostf1|20409|osteoclast stimulating factor 1	AK005525|Ostf1|20409|osteoclast stimulating factor 1	AK150145|Ostf1|20409|osteoclast stimulating factor 1	AK155028|Ostf1|20409|osteoclast stimulating factor 1	AK149175|Ostf1|20409|osteoclast stimulating factor 1	AK002899|Ostf1|20409|osteoclast stimulating factor 1	AK010074|Ostf1|20409|osteoclast stimulating factor 1	NM_017375|Ostf1|20409|osteoclast stimulating factor 1
mm9_v1_chr14_+_73909826_73909861	0.0029733	CAGUGCA	AK145636|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK078288|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK010270|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK010686|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	BC024950|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	NM_026119|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)
mm9_v1_chr18_+_23573908_23573935	0.00290664	CAGUGCA	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr11_+_59263522_59263622	0.00272654	CAGUGCA	AK047586|Jmjd4|194952|jumonji domain containing 4	AK037954|Jmjd4|194952|jumonji domain containing 4	BC049148|Jmjd4|194952|jumonji domain containing 4	AK052144|Jmjd4|194952|jumonji domain containing 4	AK032477|Jmjd4|194952|jumonji domain containing 4	AK145394|Jmjd4|194952|jumonji domain containing 4	AK079104|Jmjd4|194952|jumonji domain containing 4	AK084669|Jmjd4|194952|jumonji domain containing 4	NM_178659|Jmjd4|194952|jumonji domain containing 4	AK171919|Jmjd4|194952|jumonji domain containing 4	BC116707|Jmjd4|194952|jumonji domain containing 4	BC118020|Jmjd4|194952|jumonji domain containing 4	BC098198|Jmjd4|194952|jumonji domain containing 4
mm9_v1_chr18_+_61123204_61123218	0.00265237	CAGUGCA	NM_009792|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X87142|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr2_+_156022382_156022502	0.002403	CAGUGCA	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr9_+_106073255_106073259	0.00237702	CAGUGCA	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr9_+_120448935_120448954	0.00226012	CAGUGCA	NM_178676|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AK032057|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3
mm9_v1_chr6_+_108733041_108733073	0.00212121	CAGUGCA	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr5_-_36925021_36925045	0.00199282	CAGUGCA	BC042515|Tbc1d14|100855|TBC1 domain family, member 14	NM_133910|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr17_+_56396215_56396281	0.00198536	CAGUGCA	NM_010192|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK129000|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK147879|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK155363|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK034412|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK080978|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC054382|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC009161|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK005041|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC110669|Fem1a|14154|feminization 1 homolog a (C. elegans)
mm9_v1_chr7_+_80520360_80520429	0.00196745	CAGUGCA	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr14_-_119498586_119498663	0.0017667	CAGUGCA	AK038817|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK052077|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	NM_001081252|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK048685|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2
mm9_v1_chr18_+_77182835_77182910	0.00171713	CAGUGCA	NM_001039202|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	NM_029826|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK137285|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK002837|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK151285|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK152162|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK152259|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	AK014208|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2	BC058177|Hdhd2|76987|haloacid dehalogenase-like hydrolase domain containing 2
mm9_v1_chr6_-_56873822_56873940	0.00169123	CAGUGCA	AK011894|Nt5c3|107569|5'-nucleotidase, cytosolic III	AK011525|Nt5c3|107569|5'-nucleotidase, cytosolic III	NM_026004|Nt5c3|107569|5'-nucleotidase, cytosolic III
mm9_v1_chr15_+_80064503_80064578	0.00162026	CAGUGCA	AK163389|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	NM_178719|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK041184|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK038466|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK044773|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK050546|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK080375|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	BC094597|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)
mm9_v1_chr13_-_54789148_54789168	0.00155566	CAGUGCA	AK147349|Rnf44|105239|ring finger protein 44	NM_001146025|Rnf44|105239|ring finger protein 44	NM_001146026|Rnf44|105239|ring finger protein 44	NM_134064|Rnf44|105239|ring finger protein 44
mm9_v1_chr18_-_23197156_23197163	0.00147552	CAGUGCA	BC056377|Nol4|319211|nucleolar protein 4	NM_001161483|Nol4|319211|nucleolar protein 4
mm9_v1_chr4_-_34830178_34830200	0.00138276	CAGUGCA	AK017652|Zfp292|30046|zinc finger protein 292	AK018067|Zfp292|30046|zinc finger protein 292	NM_013889|Zfp292|30046|zinc finger protein 292	BC036997|Zfp292|30046|zinc finger protein 292
mm9_v1_chr6_-_24614975_24615061	0.0011428	CAGUGCA	AK143969|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK014104|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC058642|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_001167745|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_028459|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr10_+_7512691_7512745	0.00102262	CAGUGCA	AK017370|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	NM_026141|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK014453|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK011443|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK013377|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK014406|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK049634|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK164127|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK167258|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK012371|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	AK167168|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4	BC079912|Ppil4|67418|peptidylprolyl isomerase (cyclophilin)-like 4
mm9_v1_chr5_-_109089782_109089839	0.00101455	CAGUGCA	BC062929|Dgkq|110524|diacylglycerol kinase, theta	NM_199011|Dgkq|110524|diacylglycerol kinase, theta	AK170840|Dgkq|110524|diacylglycerol kinase, theta	BC066012|Dgkq|110524|diacylglycerol kinase, theta	AK048764|Dgkq|110524|diacylglycerol kinase, theta	AK132151|Dgkq|110524|diacylglycerol kinase, theta
mm9_v1_chr3_+_105255247_105255337	0.000469166	CAGUGCA	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr3_-_107847757_107847776	0.000413227	CAGUGCA	NM_026764|Gstm4|14865|glutathione S-transferase, mu 4	AK003418|Gstm4|14865|glutathione S-transferase, mu 4	NM_001160411|Gstm4|14865|glutathione S-transferase, mu 4
mm9_v1_chr11_+_119352933_119353046	0.000380323	CAGUGCA	NM_177394|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK170595|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK172181|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	BC056486|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK042626|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene
mm9_v1_chr11_-_89163840_89163872	0.000365278	CAGUGCA	AK146488|Nog|18121|noggin	NM_008711|Nog|18121|noggin
mm9_v1_chr2_+_30122064_30122111	0.000118968	CAGUGCA	NM_172267|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC132271|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC132273|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC145356|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC171925|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1
mm9_v1_chr16_-_98072833_98072833	7.61792e-05	CAGUGCA	NM_144789|Prdm15|114604|PR domain containing 15
mm9_v1_chr14_+_51715674_51715674	1.85378e-05	CAGUGCA	AK159966|Ang|11727|angiogenin, ribonuclease, RNase A family, 5	NM_007447|Ang|11727|angiogenin, ribonuclease, RNase A family, 5	NM_201239|Rnase4|58809|ribonuclease, RNase A family 4
