mm9_v1_chr11_-_11937330_11937512	13.538	CCAGUGU	AK030727|Grb10|14783|growth factor receptor bound protein 10	BC053842|Grb10|14783|growth factor receptor bound protein 10	AF022072|Grb10|14783|growth factor receptor bound protein 10	AK012646|Grb10|14783|growth factor receptor bound protein 10	AK163841|Grb10|14783|growth factor receptor bound protein 10	AK032927|Grb10|14783|growth factor receptor bound protein 10	NM_010345|Grb10|14783|growth factor receptor bound protein 10	FJ425892|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr6_-_31513817_31513936	7.51162	CCAGUGU	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr2_-_93174606_93174694	6.11853	CCAGUGU	BC052169|Tspan18|241556|tetraspanin 18	AK042573|Tspan18|241556|tetraspanin 18	NM_183180|Tspan18|241556|tetraspanin 18	AK011742|Tspan18|241556|tetraspanin 18
mm9_v1_chr2_-_140497204_140497211	6.07612	CCAGUGU	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr1_-_78193381_78193710	6.06732	CCAGUGU	BC048699|Pax3|18505|paired box gene 3	AK157760|Pax3|18505|paired box gene 3	AK012493|Pax3|18505|paired box gene 3	AK014337|Pax3|18505|paired box gene 3	AK044985|Pax3|18505|paired box gene 3	AK144973|Pax3|18505|paired box gene 3	AK147919|Pax3|18505|paired box gene 3	X59358|Pax3|18505|paired box gene 3	AK048723|Pax3|18505|paired box gene 3	AK083424|Pax3|18505|paired box gene 3	AK148354|Pax3|18505|paired box gene 3	AK045018|Pax3|18505|paired box gene 3	NM_001159520|Pax3|18505|paired box gene 3	NM_008781|Pax3|18505|paired box gene 3
mm9_v1_chr17_-_35840931_35841083	6.02974	CCAGUGU	L57509|Ddr1|12305|discoidin domain receptor family, member 1	AK143088|Ddr1|12305|discoidin domain receptor family, member 1	AK031442|Ddr1|12305|discoidin domain receptor family, member 1	NM_007584|Ddr1|12305|discoidin domain receptor family, member 1	NM_172962|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr17_-_35838974_35838988	5.85873	CCAGUGU	AK138698|Ddr1|12305|discoidin domain receptor family, member 1	NM_001198831|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr1_+_196446006_196446022	5.366	CCAGUGU	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr15_-_85412250_85412299	5.06052	CCAGUGU	BC058398|Wnt7b|22422|wingless-related MMTV integration site 7B	NM_009528|Wnt7b|22422|wingless-related MMTV integration site 7B
mm9_v1_chr2_-_150835067_150835133	4.43772	CCAGUGU	AK129253|Ninl|78177|ninein-like	BC067071|Ninl|78177|ninein-like	NM_207204|Ninl|78177|ninein-like
mm9_v1_chr19_+_40905768_40905801	4.17391	CCAGUGU	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr19_-_47538898_47538933	4.10628	CCAGUGU	AJ007012|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_001164717|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_008018|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr19_-_60656627_60656934	4.06265	CCAGUGU	AK036606|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK169791|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK019216|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	BC026363|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	AK147382|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172096|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_001172097|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene	NM_030197|2700078E11Rik|78832|RIKEN cDNA 2700078E11 gene
mm9_v1_chr19_-_28085534_28085655	3.99406	CCAGUGU	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr6_-_38826156_38826247	3.8515	CCAGUGU	NM_010433|Hipk2|15258|homeodomain interacting protein kinase 2
mm9_v1_chr6_-_98978185_98978383	3.72427	CCAGUGU	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr4_+_13670425_13670448	3.56344	CCAGUGU	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr9_+_72655019_72655080	3.53045	CCAGUGU	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr13_+_89680240_89680277	3.51742	CCAGUGU	AK032750|Hapln1|12950|hyaluronan and proteoglycan link protein 1	NM_013500|Hapln1|12950|hyaluronan and proteoglycan link protein 1
mm9_v1_chr6_-_112897259_112897274	3.43446	CCAGUGU	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr1_+_12682510_12682540	3.4297	CCAGUGU	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr13_-_99696254_99696340	3.22863	CCAGUGU	AK030580|Tnpo1|238799|transportin 1	AK087194|Tnpo1|238799|transportin 1	AK037001|Tnpo1|238799|transportin 1	AK029953|Tnpo1|238799|transportin 1	NM_178716|Tnpo1|238799|transportin 1
mm9_v1_chr2_-_103637096_103637239	3.14778	CCAGUGU	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr3_-_142544883_142544984	3.0462	CCAGUGU	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr8_-_92872139_92872206	2.96059	CCAGUGU	AK082602|Tox3|244579|TOX high mobility group box family member 3	NM_172913|Tox3|244579|TOX high mobility group box family member 3
mm9_v1_chr16_+_38089086_38089192	2.92175	CCAGUGU	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr18_+_83080270_83080270	2.8925	CCAGUGU	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr4_-_154010868_154010981	2.88861	CCAGUGU	AB078338|Prdm16|70673|PR domain containing 16	AK083829|Prdm16|70673|PR domain containing 16	BC053082|Prdm16|70673|PR domain containing 16	BC059838|Prdm16|70673|PR domain containing 16	NM_001177995|Prdm16|70673|PR domain containing 16	NM_027504|Prdm16|70673|PR domain containing 16
mm9_v1_chr10_+_43198945_43198945	2.81852	CCAGUGU	BC060240|Bend3|331623|BEN domain containing 3	NM_199028|Bend3|331623|BEN domain containing 3
mm9_v1_chr2_+_121332458_121332519	2.80364	CCAGUGU	NM_030234|Wdr76|241627|WD repeat domain 76	AK051037|Wdr76|241627|WD repeat domain 76	AK020004|Wdr76|241627|WD repeat domain 76	AK162181|Wdr76|241627|WD repeat domain 76	AK031592|Wdr76|241627|WD repeat domain 76	BC117821|Wdr76|241627|WD repeat domain 76	BC117822|Wdr76|241627|WD repeat domain 76
mm9_v1_chr11_-_23397927_23397986	2.66592	CCAGUGU	BC038397|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	BC052829|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK033696|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK093945|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	NM_172391|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK154196|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK155265|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK137116|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)
mm9_v1_chr19_-_41876509_41876573	2.65091	CCAGUGU	AK220317|Arhgap19|71085|Rho GTPase activating protein 19	BC086680|Arhgap19|71085|Rho GTPase activating protein 19	AK044841|Arhgap19|71085|Rho GTPase activating protein 19	AK016763|Arhgap19|71085|Rho GTPase activating protein 19	AK164477|Arhgap19|71085|Rho GTPase activating protein 19	BC139195|Arhgap19|71085|Rho GTPase activating protein 19	NM_001163495|Arhgap19|71085|Rho GTPase activating protein 19	NM_027667|Arhgap19|71085|Rho GTPase activating protein 19
mm9_v1_chr2_+_29917543_29917687	2.64938	CCAGUGU	BC018255|Set|56086|SET nuclear oncogene	NM_023871|Set|56086|SET nuclear oncogene	AB044937|Set|56086|SET nuclear oncogene	AK011630|Set|56086|SET nuclear oncogene	BC103791|Set|56086|SET nuclear oncogene
mm9_v1_chr9_-_44042043_44042131	2.63938	CCAGUGU	BC125285|Cbl|12402|Casitas B-lineage lymphoma	X57111|Cbl|12402|Casitas B-lineage lymphoma	AK153915|Cbl|12402|Casitas B-lineage lymphoma	AK163907|Cbl|12402|Casitas B-lineage lymphoma	NM_007619|Cbl|12402|Casitas B-lineage lymphoma	AK029826|Cbl|12402|Casitas B-lineage lymphoma
mm9_v1_chr1_-_152840432_152840584	2.58448	CCAGUGU	BC147549|Hmcn1|545370|hemicentin 1	BC147568|Hmcn1|545370|hemicentin 1	AK052713|Hmcn1|545370|hemicentin 1	NM_001024720|Hmcn1|545370|hemicentin 1
mm9_v1_chr13_+_41012969_41013020	2.4353	CCAGUGU	AY236875|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_133219|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK019924|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	BC054845|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr16_+_44173356_44173509	2.41094	CCAGUGU	NM_001029889|Gm608|207806|predicted gene 608
mm9_v1_chr10_-_61949345_61949552	2.33783	CCAGUGU	AK028096|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_001113355|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK086851|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK150244|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK151360|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC007148|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK149859|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC058236|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK147989|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK152424|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK165853|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	S41204|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK159783|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK167592|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168537|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168213|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_133672|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)
mm9_v1_chr11_-_78510874_78510941	2.16582	CCAGUGU	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr16_+_23224804_23224864	2.15152	CCAGUGU	BC092222|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1	NM_145933|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1
mm9_v1_chr11_-_97049185_97049278	2.04711	CCAGUGU	BC055115|Kpnb1|16211|karyopherin (importin) beta 1	AK077709|Kpnb1|16211|karyopherin (importin) beta 1	NM_008379|Kpnb1|16211|karyopherin (importin) beta 1	AK147175|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr5_-_84846348_84846408	2.03321	CCAGUGU	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr16_-_96349292_96349333	2.0123	CCAGUGU	NM_008251|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr13_+_21454688_21454753	1.98923	CCAGUGU	AK129138|Zscan12|22758|zinc finger and SCAN domain containing 12	NM_016684|Zscan12|22758|zinc finger and SCAN domain containing 12	AK075886|Zscan12|22758|zinc finger and SCAN domain containing 12	AK139837|Zscan12|22758|zinc finger and SCAN domain containing 12	AK142005|Zscan12|22758|zinc finger and SCAN domain containing 12	BC027041|Zscan12|22758|zinc finger and SCAN domain containing 12
mm9_v1_chr6_+_64992584_64992660	1.97034	CCAGUGU	NM_007958|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	X69942|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr3_+_51219882_51219968	1.96339	CCAGUGU	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr13_-_99660903_99660996	1.94205	CCAGUGU	BC055372|Tnpo1|238799|transportin 1	AK167049|Tnpo1|238799|transportin 1	AK045132|Tnpo1|238799|transportin 1	NM_001048267|Tnpo1|238799|transportin 1
mm9_v1_chr8_+_95351212_95351327	1.93962	CCAGUGU	BC070430|Mmp2|17390|matrix metallopeptidase 2	NM_008610|Mmp2|17390|matrix metallopeptidase 2	AK148184|Mmp2|17390|matrix metallopeptidase 2
mm9_v1_chr2_+_163899842_163899948	1.8247	CCAGUGU	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr6_-_91361356_91361402	1.80086	CCAGUGU	BC049093|Wnt7a|22421|wingless-related MMTV integration site 7A	BC057586|Wnt7a|22421|wingless-related MMTV integration site 7A	AK004683|Wnt7a|22421|wingless-related MMTV integration site 7A	NM_009527|Wnt7a|22421|wingless-related MMTV integration site 7A
mm9_v1_chr15_+_96117952_96118007	1.78719	CCAGUGU	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr11_-_102559011_102559087	1.7826	CCAGUGU	AK166820|Ccdc43|52715|coiled-coil domain containing 43	AK009319|Ccdc43|52715|coiled-coil domain containing 43	AK011254|Ccdc43|52715|coiled-coil domain containing 43	NM_025918|Ccdc43|52715|coiled-coil domain containing 43	AK028834|Ccdc43|52715|coiled-coil domain containing 43	AK161543|Ccdc43|52715|coiled-coil domain containing 43	BC058520|Ccdc43|52715|coiled-coil domain containing 43	BC061076|Ccdc43|52715|coiled-coil domain containing 43
mm9_v1_chr15_-_84686558_84686558	1.72957	CCAGUGU	AK046530|Phf21b|271305|PHD finger protein 21B	NM_001081166|Phf21b|271305|PHD finger protein 21B
mm9_v1_chr16_-_31274947_31275377	1.71319	CCAGUGU	AK015349|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK053657|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069886|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK002671|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK032462|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK028603|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069885|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK150281|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	NM_025800|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm9_v1_chr15_-_77672472_77672592	1.67274	CCAGUGU	AK147216|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147221|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK165379|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC116417|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC116418|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC128497|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC128498|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147215|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147222|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147203|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AJ312390|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147223|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK040822|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK083071|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147209|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147210|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147235|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147296|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147407|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147233|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147206|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK053221|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147208|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147430|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	NM_022410|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	AK147211|Myh9|17886|myosin, heavy polypeptide 9, non-muscle
mm9_v1_chr12_+_119082333_119082371	1.60756	CCAGUGU	BC006933|Cdca7l|217946|cell division cycle associated 7 like	NM_146040|Cdca7l|217946|cell division cycle associated 7 like	AK149673|Cdca7l|217946|cell division cycle associated 7 like	BC071198|Cdca7l|217946|cell division cycle associated 7 like
mm9_v1_chr6_+_135015679_135015703	1.5785	CCAGUGU	NM_181444|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A	BC039217|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A
mm9_v1_chr1_-_168339909_168339980	1.56651	CCAGUGU	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr6_-_148779856_148779997	1.55256	CCAGUGU	BC151036|Ipo8|320727|importin 8	BC151052|Ipo8|320727|importin 8	BC044819|Ipo8|320727|importin 8	BC054373|Ipo8|320727|importin 8	NM_001081113|Ipo8|320727|importin 8
mm9_v1_chr11_+_116295406_116295422	1.54899	CCAGUGU	AK144901|Fam100b|319370|family with sequence similarity 100, member B	NM_176902|Fam100b|319370|family with sequence similarity 100, member B
mm9_v1_chr19_-_7315495_7315711	1.51543	CCAGUGU	AK202154|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK035418|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033510|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK170548|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033896|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK089209|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK162625|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	BC020020|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK016504|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	NM_027643|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm9_v1_chr12_+_112404645_112404765	1.49813	CCAGUGU	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr11_-_77421308_77421363	1.4869	CCAGUGU	AK143530|Taok1|216965|TAO kinase 1	NM_144825|Taok1|216965|TAO kinase 1
mm9_v1_chr18_-_9450104_9450192	1.46553	CCAGUGU	BC023321|Ccny|67974|cyclin Y	AK028696|Ccny|67974|cyclin Y	NM_026484|Ccny|67974|cyclin Y	AK014201|Ccny|67974|cyclin Y
mm9_v1_chr14_+_21748646_21748736	1.43671	CCAGUGU	BC008520|Vcl|22330|vinculin	NM_009502|Vcl|22330|vinculin	L18880|Vcl|22330|vinculin
mm9_v1_chr11_+_77499638_77499656	1.42465	CCAGUGU	AK030113|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK160601|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	NM_001024205|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK170764|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2	AK122494|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr2_+_91297678_91297857	1.42013	CCAGUGU	NM_001145857|Lrp4|228357|low density lipoprotein receptor-related protein 4	NM_172668|Lrp4|228357|low density lipoprotein receptor-related protein 4	BC132240|Lrp4|228357|low density lipoprotein receptor-related protein 4	AF247637|Lrp4|228357|low density lipoprotein receptor-related protein 4
mm9_v1_chr4_+_124334876_124334927	1.39435	CCAGUGU	NM_011141|Pou3f1|18991|POU domain, class 3, transcription factor 1	X54628|Pou3f1|18991|POU domain, class 3, transcription factor 1	X56959|Pou3f1|18991|POU domain, class 3, transcription factor 1	X57482|Pou3f1|18991|POU domain, class 3, transcription factor 1
mm9_v1_chr12_+_75008853_75009062	1.385	CCAGUGU	NM_010431|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK034087|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK150367|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK138944|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK017853|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	BC026139|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AF003695|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr9_+_44412931_44412987	1.36479	CCAGUGU	NM_001110826|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_007841|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	NM_181324|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK148483|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK036648|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	AK054144|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr15_+_99532698_99532771	1.34766	CCAGUGU	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr9_+_21420612_21420824	1.3094	CCAGUGU	BC079560|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174078|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174079|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_011417|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK147285|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK166837|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK160825|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK135308|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK142137|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC061214|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC060229|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC023830|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC032162|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC054056|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC014760|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK051530|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm9_v1_chr11_+_87861165_87861225	1.30294	CCAGUGU	AK150535|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_001078167|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_173374|Srsf1|110809|serine/arginine-rich splicing factor 1	AK053674|Srsf1|110809|serine/arginine-rich splicing factor 1	AK018176|Srsf1|110809|serine/arginine-rich splicing factor 1	BC058627|Srsf1|110809|serine/arginine-rich splicing factor 1	AK078715|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169203|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169623|Srsf1|110809|serine/arginine-rich splicing factor 1	AK190745|Srsf1|110809|serine/arginine-rich splicing factor 1
mm9_v1_chr17_+_78599556_78599594	1.29746	CCAGUGU	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr9_-_106691395_106691543	1.29666	CCAGUGU	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr12_-_70782807_70782838	1.29436	CCAGUGU	NM_001135559|Sos2|20663|son of sevenless homolog 2 (Drosophila)
mm9_v1_chr13_+_40982534_40982735	1.26249	CCAGUGU	NM_008105|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK080061|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK054226|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AB037597|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435149|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr15_+_80004048_80004240	1.22816	CCAGUGU	AK081850|Mgat3|17309|mannoside acetylglucosaminyltransferase 3	NM_010795|Mgat3|17309|mannoside acetylglucosaminyltransferase 3	BC053040|Mgat3|17309|mannoside acetylglucosaminyltransferase 3
mm9_v1_chr4_+_13678443_13678575	1.18841	CCAGUGU	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr10_-_62801726_62801784	1.186	CCAGUGU	AK140330|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	BC152314|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159590|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AY377984|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AF214646|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_019812|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	AK144203|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)	NM_001159589|Sirt1|93759|sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)
mm9_v1_chr2_-_153067043_153067211	1.17142	CCAGUGU	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chrX_-_6952873_6952997	1.16707	CCAGUGU	BC137612|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	AK028249|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	NM_019461|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome
mm9_v1_chr4_-_34562138_34562200	1.15663	CCAGUGU	AB190257|Orc3|50793|origin recognition complex, subunit 3	BC061252|Orc3|50793|origin recognition complex, subunit 3	AK145324|Orc3|50793|origin recognition complex, subunit 3	AK045388|Orc3|50793|origin recognition complex, subunit 3	AJ132830|Orc3|50793|origin recognition complex, subunit 3	NM_001159563|Orc3|50793|origin recognition complex, subunit 3	NM_015824|Orc3|50793|origin recognition complex, subunit 3	AK086579|Orc3|50793|origin recognition complex, subunit 3
mm9_v1_chrX_+_98469429_98469601	1.15082	CCAGUGU	BC090654|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)	NM_021521|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)
mm9_v1_chr12_+_80130149_80130201	1.14946	CCAGUGU	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chrY_-_623013_623055	1.14931	CCAGUGU	AK154382|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	AJ007376|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	BC051046|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	NM_012008|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr11_+_77306825_77306918	1.14083	CCAGUGU	BC079870|Git1|216963|G protein-coupled receptor kinase-interactor 1	NM_001004144|Git1|216963|G protein-coupled receptor kinase-interactor 1
mm9_v1_chr19_-_41338400_41338559	1.12886	CCAGUGU	AF269151|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK075807|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK220279|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK147380|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK147629|Tm9sf3|107358|transmembrane 9 superfamily member 3	NM_133352|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr6_+_120616386_120616438	1.12597	CCAGUGU	AK137536|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)	NM_001128151|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)
mm9_v1_chr12_+_9581218_9581247	1.09899	CCAGUGU	NM_011859|Osr1|23967|odd-skipped related 1 (Drosophila)
mm9_v1_chr10_-_121063321_121063512	1.08785	CCAGUGU	NM_001081056|Xpot|73192|exportin, tRNA (nuclear export receptor for tRNAs)
mm9_v1_chr1_+_133807034_133807132	1.08448	CCAGUGU	NM_001145804|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	NM_175294|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AB049825|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AK078816|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	BC039951|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm9_v1_chr13_+_47138896_47138963	1.07239	CCAGUGU	NM_172262|Kdm1b|218214|lysine (K)-specific demethylase 1B	BC023917|Kdm1b|218214|lysine (K)-specific demethylase 1B
mm9_v1_chr17_-_46169322_46169332	1.0662	CCAGUGU	NM_001025250|Vegfa|22339|vascular endothelial growth factor A	NM_001025257|Vegfa|22339|vascular endothelial growth factor A	NM_009505|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr1_-_95375372_95375387	1.05331	CCAGUGU	BC027779|Hdlbp|110611|high density lipoprotein (HDL) binding protein	BC027788|Hdlbp|110611|high density lipoprotein (HDL) binding protein	NM_133808|Hdlbp|110611|high density lipoprotein (HDL) binding protein
mm9_v1_chr4_-_44180323_44180519	1.04736	CCAGUGU	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr19_-_7557690_7557778	1.0377	CCAGUGU	BC079882|Rtn3|20168|reticulon 3	BC014697|Rtn3|20168|reticulon 3	AK075883|Rtn3|20168|reticulon 3	AK165683|Rtn3|20168|reticulon 3	AK088670|Rtn3|20168|reticulon 3	AK049845|Rtn3|20168|reticulon 3	AF195940|Rtn3|20168|reticulon 3	AK148792|Rtn3|20168|reticulon 3	AK148947|Rtn3|20168|reticulon 3	AK036892|Rtn3|20168|reticulon 3	AK032109|Rtn3|20168|reticulon 3	AY427822|Rtn3|20168|reticulon 3	AY750849|Rtn3|20168|reticulon 3	AB046114|Rtn3|20168|reticulon 3	AY164700|Rtn3|20168|reticulon 3	NM_053076|Rtn3|20168|reticulon 3	NM_001003933|Rtn3|20168|reticulon 3	NM_001003934|Rtn3|20168|reticulon 3
mm9_v1_chr14_+_31832323_31832337	1.03547	CCAGUGU	AK165182|Pbrm1|66923|polybromo 1	NM_001081251|Pbrm1|66923|polybromo 1
mm9_v1_chr19_+_54019308_54019391	0.997753	CCAGUGU	NM_019658|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)	AK146447|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)
mm9_v1_chr4_-_82505534_82505564	0.997179	CCAGUGU	NM_026647|Zdhhc21|68268|zinc finger, DHHC domain containing 21
mm9_v1_chr14_+_27399015_27399092	0.996532	CCAGUGU	AK054295|Fam116a|211922|family with sequence similarity 116, member A	NM_001134465|Fam116a|211922|family with sequence similarity 116, member A	NM_145969|Fam116a|211922|family with sequence similarity 116, member A	AK132219|Fam116a|211922|family with sequence similarity 116, member A	AK131163|Fam116a|211922|family with sequence similarity 116, member A	BC025603|Fam116a|211922|family with sequence similarity 116, member A	AK161908|Fam116a|211922|family with sequence similarity 116, member A	AK054197|Fam116a|211922|family with sequence similarity 116, member A
mm9_v1_chr3_-_65762057_65762146	0.984473	CCAGUGU	BC094383|Ccnl1|56706|cyclin L1	BC069909|Ccnl1|56706|cyclin L1	BC037204|Ccnl1|56706|cyclin L1	BC117816|Ccnl1|56706|cyclin L1	AF159159|Ccnl1|56706|cyclin L1	AK011629|Ccnl1|56706|cyclin L1	AK051380|Ccnl1|56706|cyclin L1	BC007177|Ccnl1|56706|cyclin L1	AF467251|Ccnl1|56706|cyclin L1	NM_019937|Ccnl1|56706|cyclin L1
mm9_v1_chr18_-_6135924_6136095	0.977881	CCAGUGU	AK031648|Arhgap12|75415|Rho GTPase activating protein 12	AK012717|Arhgap12|75415|Rho GTPase activating protein 12	AK077063|Arhgap12|75415|Rho GTPase activating protein 12	NM_001039692|Arhgap12|75415|Rho GTPase activating protein 12	NM_029277|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr11_-_59104252_59104253	0.963243	CCAGUGU	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chr18_-_63851841_63852091	0.96196	CCAGUGU	AF052660|Txnl1|53382|thioredoxin-like 1	AK144211|Txnl1|53382|thioredoxin-like 1	AK150326|Txnl1|53382|thioredoxin-like 1	AK168712|Txnl1|53382|thioredoxin-like 1	AK150887|Txnl1|53382|thioredoxin-like 1	AK152101|Txnl1|53382|thioredoxin-like 1	AK150983|Txnl1|53382|thioredoxin-like 1	AK167954|Txnl1|53382|thioredoxin-like 1	AK051698|Txnl1|53382|thioredoxin-like 1	AK029807|Txnl1|53382|thioredoxin-like 1	NM_016792|Txnl1|53382|thioredoxin-like 1	BC061123|Txnl1|53382|thioredoxin-like 1
mm9_v1_chr17_-_35837432_35837546	0.957097	CCAGUGU	AF026259|Ddr1|12305|discoidin domain receptor family, member 1	BC006836|Ddr1|12305|discoidin domain receptor family, member 1	NM_001198833|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr7_-_29383180_29383213	0.931842	CCAGUGU	AK129298|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4	NM_027470|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4
mm9_v1_chr10_+_107599446_107599460	0.910777	CCAGUGU	AK004785|Ppp1r12a|17931|protein phosphatase 1, regulatory (inhibitor) subunit 12A	NM_027892|Ppp1r12a|17931|protein phosphatase 1, regulatory (inhibitor) subunit 12A
mm9_v1_chr6_-_39068340_39068419	0.888625	CCAGUGU	AK036886|Parp12|243771|poly (ADP-ribose) polymerase family, member 12	NM_172893|Parp12|243771|poly (ADP-ribose) polymerase family, member 12
mm9_v1_chr11_-_85048564_85048637	0.886702	CCAGUGU	BC018442|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	BC019152|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK133853|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	NM_025825|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK004888|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm9_v1_chr11_+_62944973_62945074	0.868494	CCAGUGU	NM_008885|Pmp22|18858|peripheral myelin protein 22	M32240|Pmp22|18858|peripheral myelin protein 22	BC010765|Pmp22|18858|peripheral myelin protein 22	AK076005|Pmp22|18858|peripheral myelin protein 22	AK171745|Pmp22|18858|peripheral myelin protein 22
mm9_v1_chr13_+_112476313_112476385	0.866289	CCAGUGU	AK147427|Mier3|218613|mesoderm induction early response 1, family member 3	NM_172593|Mier3|218613|mesoderm induction early response 1, family member 3
mm9_v1_chr1_+_12708582_12708625	0.862835	CCAGUGU	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr4_-_133843139_133843188	0.860569	CCAGUGU	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr1_-_155179844_155179930	0.860562	CCAGUGU	J02930|Lamc1|226519|laminin, gamma 1	AK144233|Lamc1|226519|laminin, gamma 1	J03484|Lamc1|226519|laminin, gamma 1	NM_010683|Lamc1|226519|laminin, gamma 1
mm9_v1_chr5_+_139676589_139676634	0.858389	CCAGUGU	AK014585|Sun1|77053|Sad1 and UNC84 domain containing 1	AK036187|Sun1|77053|Sad1 and UNC84 domain containing 1	AK161959|Sun1|77053|Sad1 and UNC84 domain containing 1	AK162533|Sun1|77053|Sad1 and UNC84 domain containing 1	AK167686|Sun1|77053|Sad1 and UNC84 domain containing 1	BC048156|Sun1|77053|Sad1 and UNC84 domain containing 1	BC047928|Sun1|77053|Sad1 and UNC84 domain containing 1	NM_024451|Sun1|77053|Sad1 and UNC84 domain containing 1	AK160281|Sun1|77053|Sad1 and UNC84 domain containing 1
mm9_v1_chr2_-_33323966_33324113	0.853703	CCAGUGU	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chr9_-_21602942_21603000	0.815352	CCAGUGU	BC010245|Kank2|235041|KN motif and ankyrin repeat domains 2	AK045492|Kank2|235041|KN motif and ankyrin repeat domains 2	BC006647|Kank2|235041|KN motif and ankyrin repeat domains 2	AK031324|Kank2|235041|KN motif and ankyrin repeat domains 2	AK049288|Kank2|235041|KN motif and ankyrin repeat domains 2	NM_145611|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chr15_+_99803210_99803320	0.795303	CCAGUGU	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr8_-_108351060_108351249	0.789077	CCAGUGU	AK173177|Ranbp10|74334|RAN binding protein 10	BC024698|Ranbp10|74334|RAN binding protein 10	AK048772|Ranbp10|74334|RAN binding protein 10	EU281316|Ranbp10|74334|RAN binding protein 10	AY337314|Ranbp10|74334|RAN binding protein 10	NM_145824|Ranbp10|74334|RAN binding protein 10
mm9_v1_chr12_-_52930506_52930535	0.776418	CCAGUGU	AK172326|Hectd1|207304|HECT domain containing 1	NM_144788|Hectd1|207304|HECT domain containing 1
mm9_v1_chr15_+_101004502_101004580	0.762412	CCAGUGU	BC145775|Acvr1b|11479|activin A receptor, type 1B	BC145777|Acvr1b|11479|activin A receptor, type 1B	AK154578|Acvr1b|11479|activin A receptor, type 1B	AK157910|Acvr1b|11479|activin A receptor, type 1B	NM_007395|Acvr1b|11479|activin A receptor, type 1B	BC059832|Acvr1b|11479|activin A receptor, type 1B	Z31663|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr14_+_14845004_14845173	0.75632	CCAGUGU	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chrX_-_103207106_103207254	0.754146	CCAGUGU	AK144696|Magt1|67075|magnesium transporter 1	AK012185|Magt1|67075|magnesium transporter 1	AK013243|Magt1|67075|magnesium transporter 1	AK136622|Magt1|67075|magnesium transporter 1	BC003881|Magt1|67075|magnesium transporter 1	AK018623|Magt1|67075|magnesium transporter 1	AK010320|Magt1|67075|magnesium transporter 1	DQ000005|Magt1|67075|magnesium transporter 1	NM_001190409|Magt1|67075|magnesium transporter 1	NM_025952|Magt1|67075|magnesium transporter 1
mm9_v1_chr8_+_74446723_74446817	0.725602	CCAGUGU	NM_133358|Zfp617|170938|zinc finger protein 617	AK143880|Zfp617|170938|zinc finger protein 617	AB020542|Zfp617|170938|zinc finger protein 617	AK146644|Zfp617|170938|zinc finger protein 617	BC014712|Zfp617|170938|zinc finger protein 617
mm9_v1_chr2_-_63936044_63936094	0.713563	CCAGUGU	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr8_-_75016484_75016582	0.71317	CCAGUGU	NM_177766|Slc35e1|270066|solute carrier family 35, member E1
mm9_v1_chr4_-_43512476_43512545	0.686296	CCAGUGU	AK087493|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	BC080700|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	AK153880|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	NM_001013377|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene
mm9_v1_chr1_+_162836541_162836569	0.683443	CCAGUGU	NM_001024952|Rc3h1|381305|RING CCCH (C3H) domains 1	AK139648|Rc3h1|381305|RING CCCH (C3H) domains 1
mm9_v1_chrX_+_12858142_12858215	0.683273	CCAGUGU	AK140990|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	NM_010028|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	Z38117|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	AK163250|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC150862|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC172016|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	L25126|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr3_-_84024766_84024812	0.672736	CCAGUGU	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr8_+_112302530_112302620	0.671585	CCAGUGU	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr8_-_23816962_23817062	0.665025	CCAGUGU	BC004772|Ikbkb|16150|inhibitor of kappaB kinase beta	BC019210|Ikbkb|16150|inhibitor of kappaB kinase beta	BC037723|Ikbkb|16150|inhibitor of kappaB kinase beta	AK151955|Ikbkb|16150|inhibitor of kappaB kinase beta	AK153151|Ikbkb|16150|inhibitor of kappaB kinase beta	AK150884|Ikbkb|16150|inhibitor of kappaB kinase beta	AK151888|Ikbkb|16150|inhibitor of kappaB kinase beta	AK155587|Ikbkb|16150|inhibitor of kappaB kinase beta	AK011359|Ikbkb|16150|inhibitor of kappaB kinase beta	AK139972|Ikbkb|16150|inhibitor of kappaB kinase beta	AK156294|Ikbkb|16150|inhibitor of kappaB kinase beta	AK144048|Ikbkb|16150|inhibitor of kappaB kinase beta	AK172275|Ikbkb|16150|inhibitor of kappaB kinase beta	AK051128|Ikbkb|16150|inhibitor of kappaB kinase beta	AK053346|Ikbkb|16150|inhibitor of kappaB kinase beta	AK144603|Ikbkb|16150|inhibitor of kappaB kinase beta	AK086442|Ikbkb|16150|inhibitor of kappaB kinase beta	NM_001159774|Ikbkb|16150|inhibitor of kappaB kinase beta	NM_010546|Ikbkb|16150|inhibitor of kappaB kinase beta
mm9_v1_chr17_-_33028471_33028547	0.641752	CCAGUGU	BC066107|Zfp870|240066|zinc finger protein 870	NM_207245|Zfp870|240066|zinc finger protein 870
mm9_v1_chrX_-_130432840_130432967	0.640857	CCAGUGU	AK160313|Tspan6|56496|tetraspanin 6	AK167384|Tspan6|56496|tetraspanin 6	AK146673|Tspan6|56496|tetraspanin 6	AK149204|Tspan6|56496|tetraspanin 6	BC110314|Tspan6|56496|tetraspanin 6	BC003733|Tspan6|56496|tetraspanin 6	NM_019656|Tspan6|56496|tetraspanin 6
mm9_v1_chr1_-_13364092_13364163	0.637214	CCAGUGU	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr4_+_41296028_41296100	0.63343	CCAGUGU	NM_023305|Ubap1|67123|ubiquitin-associated protein 1	AK009596|Ubap1|67123|ubiquitin-associated protein 1	AK076078|Ubap1|67123|ubiquitin-associated protein 1	AK028477|Ubap1|67123|ubiquitin-associated protein 1	AK163229|Ubap1|67123|ubiquitin-associated protein 1	AK033121|Ubap1|67123|ubiquitin-associated protein 1	AK028670|Ubap1|67123|ubiquitin-associated protein 1	BC065996|Ubap1|67123|ubiquitin-associated protein 1	AF275549|Ubap1|67123|ubiquitin-associated protein 1	AK030370|Ubap1|67123|ubiquitin-associated protein 1
mm9_v1_chr13_+_62231249_62231259	0.630625	CCAGUGU	BC061203|Zfp808|630579|zinc finger protein 80	NM_001039239|Zfp808|630579|zinc finger protein 80	AK013043|2810408B13Rik|76371|RIKEN cDNA 2810408B13 gene
mm9_v1_chr10_+_127176590_127176697	0.617949	CCAGUGU	BC058661|Zbtb39|320080|zinc finger and BTB domain containing 39	NM_198035|Zbtb39|320080|zinc finger and BTB domain containing 39	AK135409|Zbtb39|320080|zinc finger and BTB domain containing 39	AK155700|Zbtb39|320080|zinc finger and BTB domain containing 39	BC079569|Zbtb39|320080|zinc finger and BTB domain containing 39
mm9_v1_chr2_+_57090045_57090088	0.609941	CCAGUGU	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chrX_+_82819294_82819360	0.606942	CCAGUGU	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr12_+_113917038_113917088	0.602635	CCAGUGU	BC046387|Zbtb42|382639|zinc finger and BTB domain containing 42	NM_001100460|Zbtb42|382639|zinc finger and BTB domain containing 42
mm9_v1_chr11_-_104303565_104303604	0.568339	CCAGUGU	AK153679|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene	AK122484|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene	NM_001081045|1700081L11Rik|76719|RIKEN cDNA 1700081L11 gene
mm9_v1_chr15_+_38837818_38837834	0.563079	CCAGUGU	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chrX_+_23270202_23270284	0.54624	CCAGUGU	AK049071|Wdr44|72404|WD repeat domain 44	AK088885|Wdr44|72404|WD repeat domain 44	BC068151|Wdr44|72404|WD repeat domain 44	NM_175180|Wdr44|72404|WD repeat domain 44	BC049191|Wdr44|72404|WD repeat domain 44	AK011669|Wdr44|72404|WD repeat domain 44
mm9_v1_chr18_+_83084023_83084023	0.546151	CCAGUGU	NM_001177464|Zfp516|329003|zinc finger protein 516
mm9_v1_chr5_-_5380077_5380250	0.543437	CCAGUGU	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr11_+_87881747_87881842	0.532323	CCAGUGU	AF104410|Vezf1|22344|vascular endothelial zinc finger 1	NM_016686|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr5_+_123794456_123794498	0.526169	CCAGUGU	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chr2_+_34627607_34627658	0.515663	CCAGUGU	NM_001163434|Hspa5|14828|heat shock protein 5	NM_022310|Hspa5|14828|heat shock protein 5	AK077463|Hspa5|14828|heat shock protein 5	AK146647|Hspa5|14828|heat shock protein 5	AK148539|Hspa5|14828|heat shock protein 5	AK149447|Hspa5|14828|heat shock protein 5	AK151647|Hspa5|14828|heat shock protein 5	AK151806|Hspa5|14828|heat shock protein 5	AK152958|Hspa5|14828|heat shock protein 5	AK160821|Hspa5|14828|heat shock protein 5	AK168012|Hspa5|14828|heat shock protein 5	AK169034|Hspa5|14828|heat shock protein 5	AK004578|Hspa5|14828|heat shock protein 5	AK076079|Hspa5|14828|heat shock protein 5	AK144650|Hspa5|14828|heat shock protein 5	AK144742|Hspa5|14828|heat shock protein 5	AK152020|Hspa5|14828|heat shock protein 5	AK159719|Hspa5|14828|heat shock protein 5	AK166207|Hspa5|14828|heat shock protein 5	AK166739|Hspa5|14828|heat shock protein 5	AK167011|Hspa5|14828|heat shock protein 5	AK152521|Hspa5|14828|heat shock protein 5	AK168230|Hspa5|14828|heat shock protein 5	BC050927|Hspa5|14828|heat shock protein 5
mm9_v1_chr5_+_33678157_33678258	0.515044	CCAGUGU	AK145800|Maea|59003|macrophage erythroblast attacher	AK168788|Maea|59003|macrophage erythroblast attacher	AK049424|Maea|59003|macrophage erythroblast attacher	AK088854|Maea|59003|macrophage erythroblast attacher	AK152523|Maea|59003|macrophage erythroblast attacher	AK169149|Maea|59003|macrophage erythroblast attacher	NM_021500|Maea|59003|macrophage erythroblast attacher	AK034859|Maea|59003|macrophage erythroblast attacher	BC058687|Maea|59003|macrophage erythroblast attacher	BC039054|Maea|59003|macrophage erythroblast attacher	AK191436|Maea|59003|macrophage erythroblast attacher	AK218361|Maea|59003|macrophage erythroblast attacher	AK007307|Maea|59003|macrophage erythroblast attacher	AF263247|Maea|59003|macrophage erythroblast attacher
mm9_v1_chr2_-_131855722_131855755	0.509441	CCAGUGU	NM_175445|Rassf2|215653|Ras association (RalGDS/AF-6) domain family member 2
mm9_v1_chrX_+_130593867_130593899	0.507746	CCAGUGU	AK147438|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	AK088260|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	NM_133196|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2
mm9_v1_chr7_+_82600419_82600490	0.504159	CCAGUGU	NM_029332|Akap13|75547|A kinase (PRKA) anchor protein 13	AK157986|Akap13|75547|A kinase (PRKA) anchor protein 13	AK172125|Akap13|75547|A kinase (PRKA) anchor protein 13
mm9_v1_chr4_-_10934608_10934850	0.5013	CCAGUGU	BC016134|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	BC039276|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	AK154634|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	AK033666|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2	NM_175175|Plekhf2|71801|pleckstrin homology domain containing, family F (with FYVE domain) member 2
mm9_v1_chr3_-_68930928_68931049	0.50052	CCAGUGU	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr7_-_20355880_20355889	0.494353	CCAGUGU	AF109160|Bcam|57278|basal cell adhesion molecule	NM_020486|Bcam|57278|basal cell adhesion molecule
mm9_v1_chr9_+_20447739_20447785	0.492305	CCAGUGU	AK051149|Ubl5|66177|ubiquitin-like 5	NM_025401|Ubl5|66177|ubiquitin-like 5	AK040449|Ubl5|66177|ubiquitin-like 5
mm9_v1_chr12_+_79849918_79849954	0.490961	CCAGUGU	NM_019579|Mpp5|56217|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm9_v1_chr2_-_124949149_124949396	0.486981	CCAGUGU	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr6_+_38383918_38383949	0.482935	CCAGUGU	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr6_+_133985717_133985901	0.473632	CCAGUGU	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr19_-_44144244_44144286	0.463015	CCAGUGU	AK145990|Erlin1|226144|ER lipid raft associated 1	NM_001164359|Erlin1|226144|ER lipid raft associated 1	NM_001164360|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr3_+_89577436_89577810	0.459995	CCAGUGU	NM_027315|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY112699|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY945937|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AK146707|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr14_+_57506630_57506655	0.451449	CCAGUGU	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr2_-_53050207_53050293	0.448251	CCAGUGU	AF135439|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	NM_018785|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	AK045207|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	BC003318|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	AK087963|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)
mm9_v1_chr11_+_69794546_69794727	0.447106	CCAGUGU	AK076150|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	BC018265|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	NM_026017|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	AK012063|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	AK164602|Ctdnep1|67181|CTD nuclear envelope phosphatase 1
mm9_v1_chr5_-_66543123_66543228	0.44228	CCAGUGU	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr8_-_3279545_3279616	0.437666	CCAGUGU	AK052187|Insr|16337|insulin receptor	NM_010568|Insr|16337|insulin receptor
mm9_v1_chr10_-_116813919_116814033	0.437406	CCAGUGU	AK048615|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK046856|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK168764|Cpsf6|432508|cleavage and polyadenylation specific factor 6	BC068133|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK049749|Cpsf6|432508|cleavage and polyadenylation specific factor 6	AK077684|Cpsf6|432508|cleavage and polyadenylation specific factor 6	NM_001013391|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr7_-_20334872_20334921	0.42526	CCAGUGU	BC059941|Pvrl2|19294|poliovirus receptor-related 2	NM_001159724|Pvrl2|19294|poliovirus receptor-related 2	NM_008990|Pvrl2|19294|poliovirus receptor-related 2
mm9_v1_chr18_-_24688688_24688704	0.420115	CCAGUGU	AK220475|Rprd1a|225283|regulation of nuclear pre-mRNA domain containing 1A	NM_144861|Rprd1a|225283|regulation of nuclear pre-mRNA domain containing 1A
mm9_v1_chr2_-_33743465_33743465	0.403716	CCAGUGU	BC059907|Fam125b|72543|family with sequence similarity 125, member B	NM_175184|Fam125b|72543|family with sequence similarity 125, member B
mm9_v1_chr7_+_135390325_135390446	0.398419	CCAGUGU	DQ143891|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	BC056362|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	NM_009365|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1
mm9_v1_chr12_-_60320438_60320474	0.385758	CCAGUGU	BC020022|Fbxo33|70611|F-box protein 33	NM_001033156|Fbxo33|70611|F-box protein 33
mm9_v1_chr2_-_20889276_20889347	0.348138	CCAGUGU	BC150741|Arhgap21|71435|Rho GTPase activating protein 21	BC076629|Arhgap21|71435|Rho GTPase activating protein 21	NM_001081364|Arhgap21|71435|Rho GTPase activating protein 21	NM_001128084|Arhgap21|71435|Rho GTPase activating protein 21
mm9_v1_chr2_-_155555105_155555210	0.333063	CCAGUGU	AK075650|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	BC008268|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK149892|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK040560|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK079296|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK166998|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK080636|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK029164|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK155024|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	NM_145537|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2
mm9_v1_chr7_-_87065480_87065546	0.3282	CCAGUGU	U91933|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC060236|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	BC028319|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK037336|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK028372|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK083911|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	AK150085|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit	NM_009682|Ap3s2|11778|adaptor-related protein complex 3, sigma 2 subunit
mm9_v1_chr11_+_100981384_100981545	0.319591	CCAGUGU	AK160125|Tubg1|103733|tubulin, gamma 1	BC006581|Tubg1|103733|tubulin, gamma 1	NM_134024|Tubg1|103733|tubulin, gamma 1	AK183189|Tubg1|103733|tubulin, gamma 1	AK192509|Tubg1|103733|tubulin, gamma 1	AK154019|Tubg1|103733|tubulin, gamma 1	AK196283|Tubg1|103733|tubulin, gamma 1
mm9_v1_chr9_+_43552516_43552726	0.316168	CCAGUGU	BC060694|Pvrl1|58235|poliovirus receptor-related 1	NM_021424|Pvrl1|58235|poliovirus receptor-related 1	AF297665|Pvrl1|58235|poliovirus receptor-related 1	AF239762|Pvrl1|58235|poliovirus receptor-related 1	AF270977|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr8_+_28196312_28196323	0.292394	CCAGUGU	AF378759|Gpr124|78560|G protein-coupled receptor 124	NM_054044|Gpr124|78560|G protein-coupled receptor 124	BC138451|Gpr124|78560|G protein-coupled receptor 124	BC138452|Gpr124|78560|G protein-coupled receptor 124
mm9_v1_chr9_+_56842653_56842808	0.288702	CCAGUGU	BC053017|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	NM_019651|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chr7_+_96552871_96552906	0.286181	CCAGUGU	BC015256|Fzd4|14366|frizzled homolog 4 (Drosophila)	NM_008055|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK044794|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK132577|Fzd4|14366|frizzled homolog 4 (Drosophila)	AK050891|Fzd4|14366|frizzled homolog 4 (Drosophila)
mm9_v1_chr9_-_95412264_95412414	0.283559	CCAGUGU	BC031497|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC080699|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011588|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC059732|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK011796|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	AK029898|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	BC068265|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_001114977|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene	NM_026476|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene
mm9_v1_chr12_-_47919695_47919761	0.274225	CCAGUGU	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr5_+_114580397_114580568	0.272848	CCAGUGU	BC011039|Ung|22256|uracil DNA glycosylase	NM_001040691|Ung|22256|uracil DNA glycosylase	Y08975|Ung|22256|uracil DNA glycosylase	AK146178|Ung|22256|uracil DNA glycosylase
mm9_v1_chrX_+_98449866_98450159	0.27091	CCAGUGU	AF114260|Foxo4|54601|forkhead box O4	NM_018789|Foxo4|54601|forkhead box O4	AK157830|Foxo4|54601|forkhead box O4	BC099460|Foxo4|54601|forkhead box O4	BC139275|Foxo4|54601|forkhead box O4	BC139304|Foxo4|54601|forkhead box O4	AB032770|Foxo4|54601|forkhead box O4	AB221664|Foxo4|54601|forkhead box O4
mm9_v1_chr17_-_66450782_66450906	0.268307	CCAGUGU	AK159460|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	BC030946|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK146998|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	NM_028388|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK150404|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK151729|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK078351|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK013511|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK166539|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK169143|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2
mm9_v1_chr1_+_38054854_38055019	0.266839	CCAGUGU	AK145732|Eif5b|226982|eukaryotic translation initiation factor 5B	NM_198303|Eif5b|226982|eukaryotic translation initiation factor 5B	AK163527|Eif5b|226982|eukaryotic translation initiation factor 5B	AK145146|Eif5b|226982|eukaryotic translation initiation factor 5B	BC103806|Eif5b|226982|eukaryotic translation initiation factor 5B	AK168377|Eif5b|226982|eukaryotic translation initiation factor 5B	BC040746|Eif5b|226982|eukaryotic translation initiation factor 5B	BC018347|Eif5b|226982|eukaryotic translation initiation factor 5B	BC060288|Eif5b|226982|eukaryotic translation initiation factor 5B
mm9_v1_chr1_+_132613903_132614127	0.255384	CCAGUGU	AK036938|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK036991|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	NM_178691|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC139034|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK044678|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC099948|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK053730|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm9_v1_chr19_-_43827386_43827505	0.253812	CCAGUGU	AK051792|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC021498|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK141631|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	BC011509|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	AK048099|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)	NM_144874|Cox15|226139|COX15 homolog, cytochrome c oxidase assembly protein (yeast)
mm9_v1_chr12_+_16817770_16817770	0.244156	CCAGUGU	NM_033270|E2f6|50496|E2F transcription factor 6
mm9_v1_chr8_-_127245800_127245897	0.231734	CCAGUGU	AK212172|Ttc13|234875|tetratricopeptide repeat domain 13	BC079851|Ttc13|234875|tetratricopeptide repeat domain 13	BC072577|Ttc13|234875|tetratricopeptide repeat domain 13	AK148102|Ttc13|234875|tetratricopeptide repeat domain 13	AK144842|Ttc13|234875|tetratricopeptide repeat domain 13	NM_145607|Ttc13|234875|tetratricopeptide repeat domain 13	AK051200|Ttc13|234875|tetratricopeptide repeat domain 13	AK160894|Ttc13|234875|tetratricopeptide repeat domain 13
mm9_v1_chr2_-_37278415_37278506	0.231296	CCAGUGU	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr16_+_4594703_4594731	0.228623	CCAGUGU	NM_031184|Glis2|83396|GLIS family zinc finger 2
mm9_v1_chr1_+_161162285_161162568	0.223104	CCAGUGU	BC082804|Rfwd2|26374|ring finger and WD repeat domain 2	NM_011931|Rfwd2|26374|ring finger and WD repeat domain 2	BC051565|Rfwd2|26374|ring finger and WD repeat domain 2	BC158002|Rfwd2|26374|ring finger and WD repeat domain 2	AF151110|Rfwd2|26374|ring finger and WD repeat domain 2
mm9_v1_chr7_+_28474358_28474458	0.223011	CCAGUGU	NM_001112731|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK140966|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK141645|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene
mm9_v1_chr19_-_44144175_44144240	0.213589	CCAGUGU	NM_145502|Erlin1|226144|ER lipid raft associated 1	BC021793|Erlin1|226144|ER lipid raft associated 1	BC011220|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr5_-_31262588_31262733	0.208782	CCAGUGU	BC017527|Preb|50907|prolactin regulatory element binding	AF150808|Preb|50907|prolactin regulatory element binding	AF193017|Preb|50907|prolactin regulatory element binding	AK029838|Preb|50907|prolactin regulatory element binding	AK036866|Preb|50907|prolactin regulatory element binding	AK013330|Preb|50907|prolactin regulatory element binding	AK151288|Preb|50907|prolactin regulatory element binding	NM_016703|Preb|50907|prolactin regulatory element binding
mm9_v1_chr6_+_17256369_17256377	0.203947	CCAGUGU	AB029929|Cav1|12389|caveolin 1, caveolae protein	NM_007616|Cav1|12389|caveolin 1, caveolae protein
mm9_v1_chr11_-_96685326_96685440	0.202503	CCAGUGU	AK148471|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130453|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130454|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130451|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130452|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr16_+_17233664_17233756	0.195122	CCAGUGU	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chr4_+_135762279_135762338	0.184724	CCAGUGU	NM_001008232|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	AK132294|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	BC085250|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
mm9_v1_chr3_+_95428870_95428903	0.17997	CCAGUGU	AK011334|Ensa|56205|endosulfine alpha	AK019170|Ensa|56205|endosulfine alpha	NM_001026212|Ensa|56205|endosulfine alpha	NM_019561|Ensa|56205|endosulfine alpha
mm9_v1_chr14_-_100548982_100549014	0.178194	CCAGUGU	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr4_-_109149038_109149266	0.173566	CCAGUGU	BC010299|Rnf11|29864|ring finger protein 11	NM_013876|Rnf11|29864|ring finger protein 11	AK014254|Rnf11|29864|ring finger protein 11
mm9_v1_chr4_+_13711928_13711928	0.171547	CCAGUGU	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr11_-_97627829_97627926	0.169371	CCAGUGU	BC021478|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	BC079553|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK030628|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK035158|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK004983|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK017849|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	NM_026186|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)
mm9_v1_chr9_-_114473486_114473486	0.169356	CCAGUGU	DQ005956|Trim71|636931|tripartite motif-containing 71	NM_001042503|Trim71|636931|tripartite motif-containing 71
mm9_v1_chr14_-_48188088_48188108	0.162524	CCAGUGU	AK029330|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK029967|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	BC090995|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	AK054196|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)	NM_172599|Atg14|100504663|VATG14 autophagy related 14 homolog (S. cerevisiae)
mm9_v1_chr4_+_55362895_55362941	0.156923	CCAGUGU	NM_009011|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK084917|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK142280|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK150089|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160880|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK163379|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK167582|Rad23b|19359|RAD23b homolog (S. cerevisiae)	BC027747|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160890|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160973|Rad23b|19359|RAD23b homolog (S. cerevisiae)
mm9_v1_chr4_-_149050154_149050197	0.149497	CCAGUGU	AK171025|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	AK011923|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164051|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr15_-_100253413_100253487	0.147479	CCAGUGU	L33415|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AF029758|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AK148276|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AK083478|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AK049856|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	BC019137|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	NM_001146161|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	NM_008732|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm9_v1_chr6_-_120443824_120443824	0.144251	CCAGUGU	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr5_+_122734363_122734418	0.14027	CCAGUGU	AK135118|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK083481|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK078914|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	BC068149|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	NM_177242|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)
mm9_v1_chr18_-_70212948_70213022	0.13505	CCAGUGU	BC032928|Rab27b|80718|RAB27b, member RAS oncogene family	AB067775|Rab27b|80718|RAB27b, member RAS oncogene family	AF328893|Rab27b|80718|RAB27b, member RAS oncogene family	BC018443|Rab27b|80718|RAB27b, member RAS oncogene family	NM_030554|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chr1_-_163806710_163806814	0.133343	CCAGUGU	BC138379|AI848100|226551|expressed sequence AI848100	AK171856|AI848100|226551|expressed sequence AI848100	NM_172645|AI848100|226551|expressed sequence AI848100
mm9_v1_chr2_-_7317824_7317824	0.132039	CCAGUGU	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr6_-_99216494_99216530	0.129168	CCAGUGU	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr6_+_146526406_146526495	0.124287	CCAGUGU	AK169380|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK050102|Fgfr1op2|67529|FGFR1 oncogene partner 2	NM_026218|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK151318|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK152617|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK153137|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK004662|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK008983|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK005320|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK169383|Fgfr1op2|67529|FGFR1 oncogene partner 2	AB041650|Fgfr1op2|67529|FGFR1 oncogene partner 2	BC028876|Fgfr1op2|67529|FGFR1 oncogene partner 2	AK159805|Fgfr1op2|67529|FGFR1 oncogene partner 2	BC025085|Fgfr1op2|67529|FGFR1 oncogene partner 2
mm9_v1_chr18_-_80909796_80909814	0.115861	CCAGUGU	BC061509|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK048610|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK144965|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164109|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164110|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_198429|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
mm9_v1_chr16_-_48994214_48994235	0.115125	CCAGUGU	AK009865|Dzip3|224170|DAZ interacting protein 3, zinc finger	NM_001110017|Dzip3|224170|DAZ interacting protein 3, zinc finger	NM_027341|Dzip3|224170|DAZ interacting protein 3, zinc finger
mm9_v1_chr19_+_8972532_8972606	0.113199	CCAGUGU	AK028655|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK030722|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK081915|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK149686|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC094437|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC117889|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	NM_008060|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	U92793|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK043606|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC128069|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC117888|Ganab|14376|alpha glucosidase 2 alpha neutral subunit
mm9_v1_chr8_-_71259021_71259065	0.105571	CCAGUGU	BC089162|Csgalnact1|234356|chondroitin sulfate N-acetylgalactosaminyltransferase 1	NM_172753|Csgalnact1|234356|chondroitin sulfate N-acetylgalactosaminyltransferase 1
mm9_v1_chr1_-_172145521_172145534	0.101503	CCAGUGU	BC058732|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	NM_010633|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	AK013347|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chrX_-_48559008_48559019	0.100988	CCAGUGU	AK040522|Mbnl3|171170|muscleblind-like 3 (Drosophila)	NM_134163|Mbnl3|171170|muscleblind-like 3 (Drosophila)	AK088971|Mbnl3|171170|muscleblind-like 3 (Drosophila)
mm9_v1_chr8_+_81033220_81033473	0.0985732	CCAGUGU	NM_029736|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK160402|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK079901|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152752|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152849|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK010834|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK165983|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK040517|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116666|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116717|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825926|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825927|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825928|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm9_v1_chr17_+_14416508_14416565	0.0971544	CCAGUGU	NM_022315|Smoc2|64074|SPARC related modular calcium binding 2	AJ249901|Smoc2|64074|SPARC related modular calcium binding 2	AK030958|Smoc2|64074|SPARC related modular calcium binding 2	AK159749|Smoc2|64074|SPARC related modular calcium binding 2	AK160002|Smoc2|64074|SPARC related modular calcium binding 2	AK172312|Smoc2|64074|SPARC related modular calcium binding 2	AK040109|Smoc2|64074|SPARC related modular calcium binding 2	BC019527|Smoc2|64074|SPARC related modular calcium binding 2
mm9_v1_chr2_+_138082301_138082378	0.0907773	CCAGUGU	NM_001025431|Btbd3|228662|BTB (POZ) domain containing 3	AK052530|Btbd3|228662|BTB (POZ) domain containing 3	AK161924|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr17_+_13897509_13897625	0.0887556	CCAGUGU	NM_010806|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AF172447|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4	AK166398|Mllt4|17356|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
mm9_v1_chr14_-_69903072_69903169	0.0871671	CCAGUGU	AF288621|Slc25a37|67712|solute carrier family 25, member 37	AF361699|Slc25a37|67712|solute carrier family 25, member 37	AK050414|Slc25a37|67712|solute carrier family 25, member 37	NM_026331|Slc25a37|67712|solute carrier family 25, member 37	AK006155|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr13_+_46513668_46513668	0.0857697	CCAGUGU	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr1_-_157820378_157820386	0.0791177	CCAGUGU	AK044664|Cep350|74081|centrosomal protein 350	NM_001039184|Cep350|74081|centrosomal protein 350
mm9_v1_chr9_+_108393006_108393101	0.0770278	CCAGUGU	NM_001168371|Usp19|71472|ubiquitin specific peptidase 19	NM_001168372|Usp19|71472|ubiquitin specific peptidase 19	NM_001168373|Usp19|71472|ubiquitin specific peptidase 19	NM_027804|Usp19|71472|ubiquitin specific peptidase 19	NM_145407|Usp19|71472|ubiquitin specific peptidase 19	BC060613|Usp19|71472|ubiquitin specific peptidase 19
mm9_v1_chr5_+_126012784_126012787	0.0755646	CCAGUGU	NM_001190352|Tmem132b|208151|transmembrane protein 132B
mm9_v1_chr19_-_12870612_12870615	0.0662763	CCAGUGU	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr7_-_134519509_134519563	0.0614931	CCAGUGU	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chr7_-_28764157_28764207	0.0572646	CCAGUGU	BC062253|Zfp780b|338354|zinc finger protein 780B	BC094325|Zfp780b|338354|zinc finger protein 780B	AK045524|Zfp780b|338354|zinc finger protein 780B	NM_001081021|Zfp780b|338354|zinc finger protein 780B	AK083956|Zfp780b|338354|zinc finger protein 780B
mm9_v1_chr6_-_56312803_56312803	0.0569004	CCAGUGU	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr2_+_156022382_156022502	0.0567535	CCAGUGU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr6_+_116288075_116288140	0.0548725	CCAGUGU	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr6_-_48036561_48036593	0.054529	CCAGUGU	AK156312|Zfp746|69228|zinc finger protein 746	NM_001163475|Zfp746|69228|zinc finger protein 746
mm9_v1_chrX_-_147531030_147531085	0.045902	CCAGUGU	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr1_+_92895285_92895313	0.0444878	CCAGUGU	NM_001111312|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1	AK044174|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr13_-_94269616_94269653	0.0362481	CCAGUGU	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr3_+_99966432_99966482	0.0347629	CCAGUGU	AK004887|Gdap2|14547|ganglioside-induced differentiation-associated-protein 2	NM_010269|Gdap2|14547|ganglioside-induced differentiation-associated-protein 2	AK161122|Gdap2|14547|ganglioside-induced differentiation-associated-protein 2	AK166799|Gdap2|14547|ganglioside-induced differentiation-associated-protein 2	AK166859|Gdap2|14547|ganglioside-induced differentiation-associated-protein 2	BC025070|Gdap2|14547|ganglioside-induced differentiation-associated-protein 2
mm9_v1_chr14_+_49791899_49792002	0.0330039	CCAGUGU	NM_001081430|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	AK015640|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC157931|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC158065|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC172029|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm9_v1_chrX_+_130442964_130443234	0.0322903	CCAGUGU	NM_001083895|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	NM_026838|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	AK136935|Srpx2|68792|sushi-repeat-containing protein, X-linked 2	BC028307|Srpx2|68792|sushi-repeat-containing protein, X-linked 2
mm9_v1_chr9_-_108551631_108551731	0.0234104	CCAGUGU	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr18_-_34811357_34811396	0.0178733	CCAGUGU	BC059013|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK031459|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK038523|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK047789|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK048246|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK079681|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK044478|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK052567|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK075948|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK081461|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	NM_178347|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)
mm9_v1_chr15_+_38837839_38837957	0.0142375	CCAGUGU	NM_008056|Fzd6|14368|frizzled homolog 6 (Drosophila)	BC026150|Fzd6|14368|frizzled homolog 6 (Drosophila)	AK088399|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr11_-_96690784_96690815	0.0111048	CCAGUGU	AK154167|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK085935|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_001130450|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr2_+_153117135_153117203	0.00656974	CCAGUGU	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr7_+_28623602_28623625	0.0029157	CCAGUGU	NM_011762|Zfp59|22717|zinc finger protein 59	AK142951|Zfp59|22717|zinc finger protein 59
