mm9_v1_chr7_-_71083734_71083823	9.63096	CCCUGAG	AJ245644|Klf13|50794|Kruppel-like factor 13	AJ275987|Klf13|50794|Kruppel-like factor 13	BC051557|Klf13|50794|Kruppel-like factor 13	AK155298|Klf13|50794|Kruppel-like factor 13	AF251796|Klf13|50794|Kruppel-like factor 13	NM_021366|Klf13|50794|Kruppel-like factor 13
mm9_v1_chr2_+_181498036_181498036	8.34807	CCCUGAG	BC063252|Myt1|17932|myelin transcription factor 1	NM_001171615|Myt1|17932|myelin transcription factor 1
mm9_v1_chr9_+_72655019_72655080	6.36544	CCCUGAG	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr11_+_43342241_43342329	6.18811	CCCUGAG	AK143205|Ccnjl|380694|cyclin J-like	NM_001045530|Ccnjl|380694|cyclin J-like
mm9_v1_chr6_-_53770687_53770818	6.10529	CCCUGAG	BC043099|Tril|66873|TLR4 interactor with leucine-rich repeats	BC059224|Tril|66873|TLR4 interactor with leucine-rich repeats	NM_025817|Tril|66873|TLR4 interactor with leucine-rich repeats
mm9_v1_chr2_+_172847371_172847458	6.09791	CCCUGAG	AK166609|Rbm38|56190|RNA binding motif protein 38	NM_019547|Rbm38|56190|RNA binding motif protein 38	BC006687|Rbm38|56190|RNA binding motif protein 38	AK162141|Rbm38|56190|RNA binding motif protein 38	AK146026|Rbm38|56190|RNA binding motif protein 38	AK172625|Rbm38|56190|RNA binding motif protein 38	BC085307|Rbm38|56190|RNA binding motif protein 38
mm9_v1_chr14_+_70857227_70857399	5.68034	CCCUGAG	AK049900|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	NM_145981|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC030494|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC139360|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein
mm9_v1_chr14_+_48740495_48740543	5.37313	CCCUGAG	AK030564|Peli2|93834|pellino 2	AK045515|Peli2|93834|pellino 2	NM_033602|Peli2|93834|pellino 2
mm9_v1_chr9_+_61220162_61220251	4.81452	CCCUGAG	NM_001083927|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)	NM_001083928|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)	NM_009389|Tle3|21887|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm9_v1_chr15_-_76352331_76352558	4.5143	CCCUGAG	BC057562|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)	BC089316|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)	NM_130893|Scrt1|170729|scratch homolog 1, zinc finger protein (Drosophila)
mm9_v1_chr10_-_120335907_120336063	4.43119	CCCUGAG	BC096447|Msrb3|320183|methionine sulfoxide reductase B3	AK086975|Msrb3|320183|methionine sulfoxide reductase B3	AK137163|Msrb3|320183|methionine sulfoxide reductase B3	NM_177092|Msrb3|320183|methionine sulfoxide reductase B3
mm9_v1_chr2_-_154384574_154384627	4.31766	CCCUGAG	AK044296|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK013520|Necab3|56846|N-terminal EF-hand calcium binding protein 3	AK158225|Necab3|56846|N-terminal EF-hand calcium binding protein 3	NM_021546|Necab3|56846|N-terminal EF-hand calcium binding protein 3
mm9_v1_chr11_-_106021399_106021524	4.21571	CCCUGAG	BC068130|Limd2|67803|LIM domain containing 2	AK049809|Limd2|67803|LIM domain containing 2	AK167349|Limd2|67803|LIM domain containing 2	AK169829|Limd2|67803|LIM domain containing 2	AK012581|Limd2|67803|LIM domain containing 2	AK032430|Limd2|67803|LIM domain containing 2	AK040486|Limd2|67803|LIM domain containing 2	NM_172397|Limd2|67803|LIM domain containing 2
mm9_v1_chr5_-_67490295_67490393	4.1397	CCCUGAG	AK052579|Phox2b|18935|paired-like homeobox 2b	BC079610|Phox2b|18935|paired-like homeobox 2b	NM_008888|Phox2b|18935|paired-like homeobox 2b	Y14493|Phox2b|18935|paired-like homeobox 2b
mm9_v1_chr18_+_23910833_23910892	3.99446	CCCUGAG	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr19_+_29064938_29065019	3.96858	CCCUGAG	AK078872|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK161465|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK018787|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK080238|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK012312|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	NM_025950|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	BC031761|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK038578|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK079556|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1
mm9_v1_chr7_-_90883999_90884032	3.89444	CCCUGAG	AF175292|Il16|16170|interleukin 16	NM_010551|Il16|16170|interleukin 16	AK220455|Il16|16170|interleukin 16	BC058709|Il16|16170|interleukin 16
mm9_v1_chr11_-_89864036_89864209	3.85911	CCCUGAG	Z50024|Pctp|18559|phosphatidylcholine transfer protein	BC053478|Pctp|18559|phosphatidylcholine transfer protein	BC071234|Pctp|18559|phosphatidylcholine transfer protein	AF151639|Pctp|18559|phosphatidylcholine transfer protein	NM_008796|Pctp|18559|phosphatidylcholine transfer protein
mm9_v1_chr11_-_106134024_106134359	3.81428	CCCUGAG	AK166123|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	AK159259|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_001130187|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr8_+_106625524_106625609	3.75805	CCCUGAG	NM_009868|Cdh5|12562|cadherin 5	AK164474|Cdh5|12562|cadherin 5	D63942|Cdh5|12562|cadherin 5	AK167620|Cdh5|12562|cadherin 5	BC054790|Cdh5|12562|cadherin 5	X83930|Cdh5|12562|cadherin 5
mm9_v1_chr4_-_134828503_134828682	3.73495	CCCUGAG	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr2_+_101518568_101518743	3.68402	CCCUGAG	AK041172|Traf6|22034|TNF receptor-associated factor 6	BC060705|Traf6|22034|TNF receptor-associated factor 6	NM_009424|Traf6|22034|TNF receptor-associated factor 6	AK155434|Traf6|22034|TNF receptor-associated factor 6	AK009110|Traf6|22034|TNF receptor-associated factor 6	D84655|Traf6|22034|TNF receptor-associated factor 6
mm9_v1_chr3_+_129235284_129235325	3.6594	CCCUGAG	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr6_+_42214999_42215177	3.6212	CCCUGAG	NM_007610|Casp2|12366|caspase 2	Y13085|Casp2|12366|caspase 2	BC034262|Casp2|12366|caspase 2	AK170649|Casp2|12366|caspase 2	AK052396|Casp2|12366|caspase 2	AK133829|Casp2|12366|caspase 2	AK042072|Casp2|12366|caspase 2	D28492|Casp2|12366|caspase 2	AK199368|Casp2|12366|caspase 2	AK210521|Casp2|12366|caspase 2
mm9_v1_chr1_-_134603848_134603902	3.59922	CCCUGAG	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr10_-_66559568_66559740	3.59104	CCCUGAG	AY562231|Reep3|28193|receptor accessory protein 3	AK154559|Reep3|28193|receptor accessory protein 3	AK047728|Reep3|28193|receptor accessory protein 3	AK079649|Reep3|28193|receptor accessory protein 3	NM_178606|Reep3|28193|receptor accessory protein 3	BC004607|Reep3|28193|receptor accessory protein 3	AK008058|Reep3|28193|receptor accessory protein 3	AK012403|Reep3|28193|receptor accessory protein 3	AK005026|Reep3|28193|receptor accessory protein 3	AK028868|Reep3|28193|receptor accessory protein 3
mm9_v1_chr4_-_133443662_133443718	3.57504	CCCUGAG	BC049076|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	BC094470|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	M28489|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	AK148208|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	NM_009097|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1
mm9_v1_chr6_+_120616386_120616438	3.46422	CCCUGAG	AK137536|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)	NM_001128151|Cecr2|330409|cat eye syndrome chromosome region, candidate 2 homolog (human)
mm9_v1_chr8_-_42127242_42127289	3.382	CCCUGAG	AK030510|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005865|Mtus1|102103|mitochondrial tumor suppressor 1	AY626781|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr2_-_118375365_118375421	3.36257	CCCUGAG	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr9_+_7764067_7764207	3.35055	CCCUGAG	NM_133739|Tmem123|71929|transmembrane protein 123	AK162610|Tmem123|71929|transmembrane protein 123	AK151044|Tmem123|71929|transmembrane protein 123	AK155767|Tmem123|71929|transmembrane protein 123	AK157001|Tmem123|71929|transmembrane protein 123	AK165671|Tmem123|71929|transmembrane protein 123	AK170823|Tmem123|71929|transmembrane protein 123	BC086319|Tmem123|71929|transmembrane protein 123	BC010292|Tmem123|71929|transmembrane protein 123	AK152180|Tmem123|71929|transmembrane protein 123	AK153539|Tmem123|71929|transmembrane protein 123	AK150361|Tmem123|71929|transmembrane protein 123	AK172352|Tmem123|71929|transmembrane protein 123	AK172553|Tmem123|71929|transmembrane protein 123	AK172701|Tmem123|71929|transmembrane protein 123	AK150365|Tmem123|71929|transmembrane protein 123	AK152423|Tmem123|71929|transmembrane protein 123	AK153122|Tmem123|71929|transmembrane protein 123	AK153378|Tmem123|71929|transmembrane protein 123	AK166444|Tmem123|71929|transmembrane protein 123
mm9_v1_chr4_+_118100682_118100801	3.28988	CCCUGAG	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr19_+_40905768_40905801	3.27475	CCCUGAG	AK052506|Ccnj|240665|cyclin J	NM_172839|Ccnj|240665|cyclin J	AK157841|Ccnj|240665|cyclin J	BC120921|Ccnj|240665|cyclin J	BC120922|Ccnj|240665|cyclin J	BC117559|Ccnj|240665|cyclin J
mm9_v1_chr13_+_89680240_89680277	3.25512	CCCUGAG	AK032750|Hapln1|12950|hyaluronan and proteoglycan link protein 1	NM_013500|Hapln1|12950|hyaluronan and proteoglycan link protein 1
mm9_v1_chr10_-_8605668_8605870	3.24606	CCCUGAG	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr3_-_38383688_38383798	3.2143	CCCUGAG	AK129484|Ankrd50|99696|ankyrin repeat domain 50	NM_001167883|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr16_+_17233664_17233756	3.21197	CCCUGAG	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chr4_+_124479785_124479853	2.99982	CCCUGAG	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr1_+_6720087_6720131	2.9746	CCCUGAG	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr5_-_89104575_89104676	2.96133	CCCUGAG	AK168385|Grsf1|231413|G-rich RNA sequence binding factor 1	AK168459|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_001098476|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr5_+_64551449_64551546	2.93443	CCCUGAG	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr11_-_11937330_11937512	2.89633	CCCUGAG	AK030727|Grb10|14783|growth factor receptor bound protein 10	BC053842|Grb10|14783|growth factor receptor bound protein 10	AF022072|Grb10|14783|growth factor receptor bound protein 10	AK012646|Grb10|14783|growth factor receptor bound protein 10	AK163841|Grb10|14783|growth factor receptor bound protein 10	AK032927|Grb10|14783|growth factor receptor bound protein 10	NM_010345|Grb10|14783|growth factor receptor bound protein 10	FJ425892|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr2_-_28771940_28771959	2.85118	CCCUGAG	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr4_-_133574655_133574730	2.84186	CCCUGAG	AB221669|Lin28a|83557|lin-28 homolog A (C. elegans)	BC068304|Lin28a|83557|lin-28 homolog A (C. elegans)	AF521097|Lin28a|83557|lin-28 homolog A (C. elegans)	NM_145833|Lin28a|83557|lin-28 homolog A (C. elegans)
mm9_v1_chr3_+_108087046_108087050	2.84149	CCCUGAG	BC056343|Sort1|20661|sortilin 1	NM_019972|Sort1|20661|sortilin 1
mm9_v1_chr5_+_93522440_93522507	2.83936	CCCUGAG	AK166517|Sept11|52398|septin 11	AK171368|Sept11|52398|septin 11	BC064466|Sept11|52398|septin 11	NM_001009818|Sept11|52398|septin 11
mm9_v1_chr6_-_82724366_82724447	2.8363	CCCUGAG	BC054472|Hk2|15277|hexokinase 2	AJ238540|Hk2|15277|hexokinase 2	AK019092|Hk2|15277|hexokinase 2	AK145936|Hk2|15277|hexokinase 2	AK009328|Hk2|15277|hexokinase 2	NM_013820|Hk2|15277|hexokinase 2
mm9_v1_chr15_-_73015345_73015397	2.82841	CCCUGAG	NM_153178|Eif2c2|239528|eukaryotic translation initiation factor 2C, 2
mm9_v1_chr7_+_28258771_28258858	2.72621	CCCUGAG	AK134829|Sertad3|170742|SERTA domain containing 3	AF317202|Sertad3|170742|SERTA domain containing 3	BC034886|Sertad3|170742|SERTA domain containing 3	NM_133210|Sertad3|170742|SERTA domain containing 3
mm9_v1_chrX_-_7651846_7651885	2.72161	CCCUGAG	AK139757|Suv39h1|20937|suppressor of variegation 3-9 homolog 1 (Drosophila)	AK169592|Suv39h1|20937|suppressor of variegation 3-9 homolog 1 (Drosophila)	NM_011514|Suv39h1|20937|suppressor of variegation 3-9 homolog 1 (Drosophila)
mm9_v1_chr4_+_11083585_11083598	2.70642	CCCUGAG	AJ131776|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034611|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AY034612|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	NM_021897|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK054214|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1	AK142321|Trp53inp1|60599|transformation related protein 53 inducible nuclear protein 1
mm9_v1_chr3_-_19211000_19211321	2.67978	CCCUGAG	AY007702|Pde7a|18583|phosphodiesterase 7A	AK154521|Pde7a|18583|phosphodiesterase 7A	BC062909|Pde7a|18583|phosphodiesterase 7A	NM_001122759|Pde7a|18583|phosphodiesterase 7A
mm9_v1_chr12_-_102321911_102321936	2.67713	CCCUGAG	AK053668|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	NM_001160214|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	NM_211355|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
mm9_v1_chr1_-_58561631_58561830	2.6139	CCCUGAG	BC015257|Orc2|18393|origin recognition complex, subunit 2	NM_008765|Orc2|18393|origin recognition complex, subunit 2	U27457|Orc2|18393|origin recognition complex, subunit 2	AK048408|Orc2|18393|origin recognition complex, subunit 2	AK133604|Orc2|18393|origin recognition complex, subunit 2	AK146281|Orc2|18393|origin recognition complex, subunit 2	AK146859|Orc2|18393|origin recognition complex, subunit 2	AK051747|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr19_-_10379361_10379369	2.60335	CCCUGAG	NM_198114|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr3_-_51364525_51364799	2.54429	CCCUGAG	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr4_+_136025675_136025745	2.46929	CCCUGAG	AK139583|Luzp1|269593|leucine zipper protein 1	NM_024452|Luzp1|269593|leucine zipper protein 1	AK012514|Luzp1|269593|leucine zipper protein 1	BC026746|Luzp1|269593|leucine zipper protein 1
mm9_v1_chr12_-_85559793_85559836	2.46238	CCCUGAG	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr6_-_83391623_83391671	2.4566	CCCUGAG	AK044758|Tet3|194388|tet oncogene family member 3	AK046543|Tet3|194388|tet oncogene family member 3	AK046552|Tet3|194388|tet oncogene family member 3	AK046553|Tet3|194388|tet oncogene family member 3	NM_183138|Tet3|194388|tet oncogene family member 3
mm9_v1_chr5_+_125343060_125343124	2.45339	CCCUGAG	AK143192|Zfp664|269704|zinc finger protein 664	AK086580|Zfp664|269704|zinc finger protein 664	AK039671|Zfp664|269704|zinc finger protein 664	NM_001081750|Zfp664|269704|zinc finger protein 664	AK165974|Zfp664|269704|zinc finger protein 664
mm9_v1_chr11_-_5052224_5052235	2.4001	CCCUGAG	AJ416093|Emid1|140703|EMI domain containing 1	BC130023|Emid1|140703|EMI domain containing 1	NM_080595|Emid1|140703|EMI domain containing 1
mm9_v1_chr4_+_41082993_41083094	2.36361	CCCUGAG	AK003550|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	AK075703|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	BC011112|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	AK075714|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	NM_026275|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2	AJ240086|Ube2r2|67615|ubiquitin-conjugating enzyme E2R 2
mm9_v1_chr7_+_16715637_16715696	2.35021	CCCUGAG	BC058704|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	NM_148946|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	BC080277|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2
mm9_v1_chr11_+_72420705_72421072	2.34714	CCCUGAG	NM_025985|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	BC065083|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK083029|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK012539|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK013902|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK167472|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK197264|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)
mm9_v1_chr6_+_122258946_122259119	2.33585	CCCUGAG	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr5_+_141083273_141083363	2.33032	CCCUGAG	BC138600|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC138601|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK004642|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK153283|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	NM_008494|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94351|Lfng|16848|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr10_+_79389816_79389883	2.32735	CCCUGAG	AK154956|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	NM_007880|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	BC050925|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)
mm9_v1_chr12_+_81891479_81891592	2.30448	CCCUGAG	AK030233|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK161132|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK143867|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	BC040401|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	NM_178682|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK151939|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK152820|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK164823|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr2_-_153067043_153067211	2.28407	CCCUGAG	BC037664|Plagl2|54711|pleiomorphic adenoma gene-like 2	BC078453|Plagl2|54711|pleiomorphic adenoma gene-like 2	NM_018807|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK040626|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK133833|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK141713|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK150243|Plagl2|54711|pleiomorphic adenoma gene-like 2	AK129087|Plagl2|54711|pleiomorphic adenoma gene-like 2
mm9_v1_chr14_-_55196138_55196410	2.2647	CCCUGAG	BC011035|Jub|16475|ajuba	NM_010590|Jub|16475|ajuba	U79776|Jub|16475|ajuba
mm9_v1_chr19_-_17431079_17431156	2.23742	CCCUGAG	BC039126|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK199888|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK045216|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK167048|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	D87333|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	NM_173442|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr11_-_109334465_109334613	2.19221	CCCUGAG	AK170472|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	BC017129|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6	NM_134038|Slc16a6|104681|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm9_v1_chr1_-_108693180_108693301	2.16359	CCCUGAG	AK168270|Vps4b|20479|vacuolar protein sorting 4b (yeast)	BC003799|Vps4b|20479|vacuolar protein sorting 4b (yeast)	AK165594|Vps4b|20479|vacuolar protein sorting 4b (yeast)	U10119|Vps4b|20479|vacuolar protein sorting 4b (yeast)	AK151023|Vps4b|20479|vacuolar protein sorting 4b (yeast)	AK152131|Vps4b|20479|vacuolar protein sorting 4b (yeast)	NM_009190|Vps4b|20479|vacuolar protein sorting 4b (yeast)
mm9_v1_chr19_+_5366812_5366812	2.1615	CCCUGAG	BC024640|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	NM_027236|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing
mm9_v1_chr17_-_80295336_80295462	2.12383	CCCUGAG	AK135988|Atl2|56298|atlastin GTPase 2	BC060501|Atl2|56298|atlastin GTPase 2	NM_019717|Atl2|56298|atlastin GTPase 2	AK038697|Atl2|56298|atlastin GTPase 2	AK043907|Atl2|56298|atlastin GTPase 2	AK008381|Atl2|56298|atlastin GTPase 2	NM_178050|Atl2|56298|atlastin GTPase 2
mm9_v1_chr16_+_5050149_5050235	2.11806	CCCUGAG	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chr6_+_108778633_108778716	2.09075	CCCUGAG	AK030943|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	NM_138677|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AB042828|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK151668|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK152724|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK129090|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK152979|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	AK082920|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1	BC023237|Edem1|192193|ER degradation enhancer, mannosidase alpha-like 1
mm9_v1_chr7_+_106683983_106683997	2.09029	CCCUGAG	AK147508|Arrb1|109689|arrestin, beta 1	NM_177231|Arrb1|109689|arrestin, beta 1	NM_178220|Arrb1|109689|arrestin, beta 1
mm9_v1_chr10_+_56097078_56097350	2.08556	CCCUGAG	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr2_+_37631768_37631768	2.07482	CCCUGAG	NM_001163566|Crb2|241324|crumbs homolog 2 (Drosophila)
mm9_v1_chr17_-_27165478_27165573	2.06065	CCCUGAG	AK089220|Bak1|12018|BCL2-antagonist/killer 1	BC057589|Bak1|12018|BCL2-antagonist/killer 1	NM_007523|Bak1|12018|BCL2-antagonist/killer 1	Y13231|Bak1|12018|BCL2-antagonist/killer 1
mm9_v1_chr9_-_21722533_21722626	2.06053	CCCUGAG	BC010779|Rab3d|19340|RAB3D, member RAS oncogene family	AF263365|Rab3d|19340|RAB3D, member RAS oncogene family	AK078462|Rab3d|19340|RAB3D, member RAS oncogene family	AK169369|Rab3d|19340|RAB3D, member RAS oncogene family	NM_031874|Rab3d|19340|RAB3D, member RAS oncogene family	BC020010|Rab3d|19340|RAB3D, member RAS oncogene family	AK048395|Rab3d|19340|RAB3D, member RAS oncogene family
mm9_v1_chr2_-_150835067_150835133	2.01974	CCCUGAG	AK129253|Ninl|78177|ninein-like	BC067071|Ninl|78177|ninein-like	NM_207204|Ninl|78177|ninein-like
mm9_v1_chr4_+_148178500_148178594	2.01672	CCCUGAG	BC075673|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_001159344|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	NM_027195|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK048565|Casz1|69743|castor homolog 1, zinc finger (Drosophila)	AK144492|Casz1|69743|castor homolog 1, zinc finger (Drosophila)
mm9_v1_chr6_+_113257130_113257306	1.99425	CCCUGAG	AK043372|Brpf1|78783|bromodomain and PHD finger containing, 1	AK156375|Brpf1|78783|bromodomain and PHD finger containing, 1	BC046521|Brpf1|78783|bromodomain and PHD finger containing, 1	NM_030178|Brpf1|78783|bromodomain and PHD finger containing, 1	AK177868|Brpf1|78783|bromodomain and PHD finger containing, 1	BC138361|Brpf1|78783|bromodomain and PHD finger containing, 1	BC145256|Brpf1|78783|bromodomain and PHD finger containing, 1
mm9_v1_chr14_-_71041964_71042074	1.9912	CCCUGAG	AK082858|Fgf17|14171|fibroblast growth factor 17	BC119033|Fgf17|14171|fibroblast growth factor 17	BC144776|Fgf17|14171|fibroblast growth factor 17	AK077555|Fgf17|14171|fibroblast growth factor 17	NM_008004|Fgf17|14171|fibroblast growth factor 17
mm9_v1_chr2_+_32612744_32612905	1.98339	CCCUGAG	BC003466|Tor2a|30933|torsin family 2, member A	BC024469|Tor2a|30933|torsin family 2, member A	NM_152800|Tor2a|30933|torsin family 2, member A	AK170979|Tor2a|30933|torsin family 2, member A	AK171247|Tor2a|30933|torsin family 2, member A	AK162719|Tor2a|30933|torsin family 2, member A	AK019246|Tor2a|30933|torsin family 2, member A	AK185253|Tor2a|30933|torsin family 2, member A	AK189495|Tor2a|30933|torsin family 2, member A
mm9_v1_chr13_-_54789148_54789168	1.96633	CCCUGAG	AK147349|Rnf44|105239|ring finger protein 44	NM_001146025|Rnf44|105239|ring finger protein 44	NM_001146026|Rnf44|105239|ring finger protein 44	NM_134064|Rnf44|105239|ring finger protein 44
mm9_v1_chr4_+_21703416_21703444	1.96608	CCCUGAG	AK040660|Usp45|77593|ubiquitin specific petidase 45	AK162825|Usp45|77593|ubiquitin specific petidase 45	NM_152825|Usp45|77593|ubiquitin specific petidase 45	AK088073|Usp45|77593|ubiquitin specific petidase 45	BC027768|Usp45|77593|ubiquitin specific petidase 45
mm9_v1_chr8_-_122625167_122625371	1.966	CCCUGAG	AK170923|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK172462|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK089681|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK090333|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK170639|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK157968|Zdhhc7|102193|zinc finger, DHHC domain containing 7	AK041905|Zdhhc7|102193|zinc finger, DHHC domain containing 7	BC075666|Zdhhc7|102193|zinc finger, DHHC domain containing 7	NM_133967|Zdhhc7|102193|zinc finger, DHHC domain containing 7
mm9_v1_chr15_+_84753817_84753857	1.94841	CCCUGAG	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr12_-_105990160_105990320	1.94052	CCCUGAG	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr6_-_31513817_31513936	1.93559	CCCUGAG	AB028048|Podxl|27205|podocalyxin-like	AF290209|Podxl|27205|podocalyxin-like	BC052442|Podxl|27205|podocalyxin-like	BC054530|Podxl|27205|podocalyxin-like	NM_013723|Podxl|27205|podocalyxin-like
mm9_v1_chr11_-_120657647_120657730	1.93132	CCCUGAG	AK147967|Dus1l|68730|dihydrouridine synthase 1-like (S. cerevisiae)	AK037538|Dus1l|68730|dihydrouridine synthase 1-like (S. cerevisiae)	AK148307|Dus1l|68730|dihydrouridine synthase 1-like (S. cerevisiae)	AK088243|Dus1l|68730|dihydrouridine synthase 1-like (S. cerevisiae)	NM_026824|Dus1l|68730|dihydrouridine synthase 1-like (S. cerevisiae)
mm9_v1_chr9_+_21069727_21069776	1.92767	CCCUGAG	AK154130|Atg4d|235040|autophagy-related 4D (yeast)	AK087258|Atg4d|235040|autophagy-related 4D (yeast)	AK036282|Atg4d|235040|autophagy-related 4D (yeast)	AK036571|Atg4d|235040|autophagy-related 4D (yeast)	AK081002|Atg4d|235040|autophagy-related 4D (yeast)	NM_153583|Atg4d|235040|autophagy-related 4D (yeast)	AK080353|Atg4d|235040|autophagy-related 4D (yeast)	AK044798|Atg4d|235040|autophagy-related 4D (yeast)	AK081605|Atg4d|235040|autophagy-related 4D (yeast)	BC030861|Atg4d|235040|autophagy-related 4D (yeast)	BC069851|Atg4d|235040|autophagy-related 4D (yeast)
mm9_v1_chr17_+_35998262_35998322	1.91205	CCCUGAG	BC021750|Nrm|106582|nurim (nuclear envelope membrane protein)	NM_134122|Nrm|106582|nurim (nuclear envelope membrane protein)	BC026576|Nrm|106582|nurim (nuclear envelope membrane protein)
mm9_v1_chr1_+_138521477_138521641	1.89656	CCCUGAG	NM_001160251|Zfp281|226442|zinc finger protein 281	NM_177643|Zfp281|226442|zinc finger protein 281	BC003243|Zfp281|226442|zinc finger protein 281	BC062153|Zfp281|226442|zinc finger protein 281	AK157189|Zfp281|226442|zinc finger protein 281	AK142218|Zfp281|226442|zinc finger protein 281
mm9_v1_chr4_-_116806403_116806636	1.88497	CCCUGAG	U21392|Plk3|12795|polo-like kinase 3 (Drosophila)	BC031180|Plk3|12795|polo-like kinase 3 (Drosophila)	BC063051|Plk3|12795|polo-like kinase 3 (Drosophila)	NM_013807|Plk3|12795|polo-like kinase 3 (Drosophila)	AK156754|Plk3|12795|polo-like kinase 3 (Drosophila)
mm9_v1_chr2_-_12223518_12223578	1.87718	CCCUGAG	BC137793|Itga8|241226|integrin alpha 8	AK135193|Itga8|241226|integrin alpha 8	AK044910|Itga8|241226|integrin alpha 8	NM_001001309|Itga8|241226|integrin alpha 8
mm9_v1_chr3_-_133207209_133207353	1.87618	CCCUGAG	AK155776|Tet2|214133|tet oncogene family member 2	DQ079067|Tet2|214133|tet oncogene family member 2	NM_001040400|Tet2|214133|tet oncogene family member 2
mm9_v1_chr5_+_53132801_53132856	1.86606	CCCUGAG	NM_025951|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	NM_028744|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK035523|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK170730|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK016754|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AY148879|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta	AK011751|Pi4k2b|67073|phosphatidylinositol 4-kinase type 2 beta
mm9_v1_chr10_-_45189997_45190006	1.85344	CCCUGAG	BC089037|Lin28b|380669|lin-28 homolog B (C. elegans)	BC085193|Lin28b|380669|lin-28 homolog B (C. elegans)	DQ127225|Lin28b|380669|lin-28 homolog B (C. elegans)	NM_001031772|Lin28b|380669|lin-28 homolog B (C. elegans)
mm9_v1_chr6_+_81991613_81991706	1.83935	CCCUGAG	AK145140|Fam176a|232146|family with sequence similarity 176, member A	NM_145570|Fam176a|232146|family with sequence similarity 176, member A	BC027150|Fam176a|232146|family with sequence similarity 176, member A	AK166504|Fam176a|232146|family with sequence similarity 176, member A	BC014699|Fam176a|232146|family with sequence similarity 176, member A
mm9_v1_chr4_+_47366162_47366183	1.83433	CCCUGAG	BC063260|Tgfbr1|21812|transforming growth factor, beta receptor I	NM_009370|Tgfbr1|21812|transforming growth factor, beta receptor I	D25540|Tgfbr1|21812|transforming growth factor, beta receptor I	CT010393|Tgfbr1|21812|transforming growth factor, beta receptor I	D28526|Tgfbr1|21812|transforming growth factor, beta receptor I
mm9_v1_chr13_-_54789548_54789560	1.82993	CCCUGAG	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr7_+_4691716_4691802	1.8133	CCCUGAG	AY555193|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	NM_001115018|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	NM_146177|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	AK154848|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	AK137449|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)	BC024816|Suv420h2|232811|suppressor of variegation 4-20 homolog 2 (Drosophila)
mm9_v1_chr8_-_112261607_112261664	1.79844	CCCUGAG	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr15_-_97923632_97923835	1.79687	CCCUGAG	AK028565|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK088597|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK138013|Senp1|223870|SUMO1/sentrin specific peptidase 1	AK035581|Senp1|223870|SUMO1/sentrin specific peptidase 1	NM_144851|Senp1|223870|SUMO1/sentrin specific peptidase 1
mm9_v1_chr17_-_10512217_10512250	1.79142	CCCUGAG	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr11_-_100800603_100800824	1.79101	CCCUGAG	U06922|Stat3|20848|signal transducer and activator of transcription 3	AK145486|Stat3|20848|signal transducer and activator of transcription 3	U08378|Stat3|20848|signal transducer and activator of transcription 3	BC003806|Stat3|20848|signal transducer and activator of transcription 3	U30709|Stat3|20848|signal transducer and activator of transcription 3	BC019168|Stat3|20848|signal transducer and activator of transcription 3	AK153472|Stat3|20848|signal transducer and activator of transcription 3	AK153005|Stat3|20848|signal transducer and activator of transcription 3	L29278|Stat3|20848|signal transducer and activator of transcription 3	NM_011486|Stat3|20848|signal transducer and activator of transcription 3	NM_213659|Stat3|20848|signal transducer and activator of transcription 3	NM_213660|Stat3|20848|signal transducer and activator of transcription 3
mm9_v1_chr6_+_133985717_133985901	1.78251	CCCUGAG	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr11_-_118109789_118109956	1.77906	CCCUGAG	BC057974|Cyth1|19157|cytohesin 1	AK078502|Cyth1|19157|cytohesin 1	AB013464|Cyth1|19157|cytohesin 1	AK220302|Cyth1|19157|cytohesin 1	AK172296|Cyth1|19157|cytohesin 1	AB035538|Cyth1|19157|cytohesin 1	AY126516|Cyth1|19157|cytohesin 1	NM_001112699|Cyth1|19157|cytohesin 1	NM_011180|Cyth1|19157|cytohesin 1
mm9_v1_chr19_-_5912757_5912865	1.77808	CCCUGAG	U10435|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK215194|Dpf2|19708|D4, zinc and double PHD fingers family 2	BC012709|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK138047|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144848|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK019051|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144106|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK004812|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144954|Dpf2|19708|D4, zinc and double PHD fingers family 2	U43921|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK145851|Dpf2|19708|D4, zinc and double PHD fingers family 2	NM_011262|Dpf2|19708|D4, zinc and double PHD fingers family 2
mm9_v1_chr2_+_25188246_25188306	1.77235	CCCUGAG	NM_001029983|Man1b1|227619|mannosidase, alpha, class 1B, member 1	AK043541|Man1b1|227619|mannosidase, alpha, class 1B, member 1	BC138550|Man1b1|227619|mannosidase, alpha, class 1B, member 1	BC138551|Man1b1|227619|mannosidase, alpha, class 1B, member 1
mm9_v1_chr11_-_102680467_102680523	1.77183	CCCUGAG	BC050840|Gjc1|14615|gap junction protein, gamma 1	NM_001159382|Gjc1|14615|gap junction protein, gamma 1	BC023153|Gjc1|14615|gap junction protein, gamma 1	AY390397|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr15_-_103170514_103170552	1.74451	CCCUGAG	AF118566|Zfp385a|29813|zinc finger protein 385A	NM_013866|Zfp385a|29813|zinc finger protein 385A	AK137748|Zfp385a|29813|zinc finger protein 385A
mm9_v1_chr5_-_124875921_124875965	1.73416	CCCUGAG	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr14_-_41780085_41780217	1.72621	CCCUGAG	BC026574|Tspan14|52588|tetraspanin 14	NM_145928|Tspan14|52588|tetraspanin 14	AK030593|Tspan14|52588|tetraspanin 14	BC025568|Tspan14|52588|tetraspanin 14	BC024611|Tspan14|52588|tetraspanin 14
mm9_v1_chr14_-_55482884_55482994	1.71318	CCCUGAG	AK129361|Homez|239099|homeodomain leucine zipper-encoding gene	AY258064|Homez|239099|homeodomain leucine zipper-encoding gene	NM_001177705|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr1_+_168184269_168184413	1.70256	CCCUGAG	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr7_+_52419289_52419313	1.70103	CCCUGAG	NM_182993|Slc17a7|72961|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm9_v1_chr5_-_89105135_89105221	1.68512	CCCUGAG	AK045986|Grsf1|231413|G-rich RNA sequence binding factor 1	AK044889|Grsf1|231413|G-rich RNA sequence binding factor 1	AK077782|Grsf1|231413|G-rich RNA sequence binding factor 1	NM_178700|Grsf1|231413|G-rich RNA sequence binding factor 1
mm9_v1_chr8_-_87186691_87186755	1.67662	CCCUGAG	AK172332|Ier2|15936|immediate early response 2	BC002067|Ier2|15936|immediate early response 2	AK170433|Ier2|15936|immediate early response 2	AK032692|Ier2|15936|immediate early response 2	AK144601|Ier2|15936|immediate early response 2	AK150860|Ier2|15936|immediate early response 2	AK152747|Ier2|15936|immediate early response 2	M31042|Ier2|15936|immediate early response 2	NM_010499|Ier2|15936|immediate early response 2	M59821|Ier2|15936|immediate early response 2
mm9_v1_chr15_-_88971039_88971132	1.65591	CCCUGAG	BC021640|Mapk12|29857|mitogen-activated protein kinase 12	Y13439|Mapk12|29857|mitogen-activated protein kinase 12	AK011286|Mapk12|29857|mitogen-activated protein kinase 12	AK165741|Mapk12|29857|mitogen-activated protein kinase 12	NM_013871|Mapk12|29857|mitogen-activated protein kinase 12
mm9_v1_chr4_+_128404814_128404885	1.65395	CCCUGAG	NM_001195083|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC051657|Phc2|54383|polyhomeotic-like 2 (Drosophila)	AB062362|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC071246|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr7_+_87331726_87331785	1.62354	CCCUGAG	AK145570|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	NM_013659|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK028896|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK173249|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr1_+_168931547_168931719	1.61997	CCCUGAG	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chr12_-_71087988_71088118	1.61018	CCCUGAG	AJ292968|Sav1|64010|salvador homolog 1 (Drosophila)	NM_022028|Sav1|64010|salvador homolog 1 (Drosophila)
mm9_v1_chr6_-_39156706_39156787	1.60613	CCCUGAG	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr1_-_135975681_135975731	1.59931	CCCUGAG	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr13_+_109004589_109004634	1.59927	CCCUGAG	AK049118|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	BC005602|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	NM_029001|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK050441|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK137668|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK018616|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK037162|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)
mm9_v1_chr16_+_24393435_24393655	1.59823	CCCUGAG	NM_178665|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK168431|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK085626|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051345|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045288|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK045341|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK051937|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK086307|Lpp|210126|LIM domain containing preferred translocation partner in lipoma	AK169780|Lpp|210126|LIM domain containing preferred translocation partner in lipoma
mm9_v1_chr2_-_37278415_37278506	1.58727	CCCUGAG	BC117951|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	BC117952|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	AK053071|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2	NM_001100591|Rc3h2|319817|ring finger and CCCH-type zinc finger domains 2
mm9_v1_chr6_-_13557981_13558062	1.58259	CCCUGAG	BC024911|Tmem168|101118|transmembrane protein 168	BC007160|Tmem168|101118|transmembrane protein 168	AK054353|Tmem168|101118|transmembrane protein 168	AK152957|Tmem168|101118|transmembrane protein 168	AK034589|Tmem168|101118|transmembrane protein 168	AK170302|Tmem168|101118|transmembrane protein 168	AK018471|Tmem168|101118|transmembrane protein 168	AK051532|Tmem168|101118|transmembrane protein 168	NM_028990|Tmem168|101118|transmembrane protein 168
mm9_v1_chr6_-_42274556_42274690	1.57787	CCCUGAG	AK163654|Fam131b|76156|family with sequence similarity 131, member B	AK047763|Fam131b|76156|family with sequence similarity 131, member B	AK018206|Fam131b|76156|family with sequence similarity 131, member B	AK018325|Fam131b|76156|family with sequence similarity 131, member B	AK158869|Fam131b|76156|family with sequence similarity 131, member B	NM_001113327|Fam131b|76156|family with sequence similarity 131, member B	NM_029528|Fam131b|76156|family with sequence similarity 131, member B
mm9_v1_chr1_+_194014677_194014800	1.55263	CCCUGAG	AK140193|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_001038607|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	NM_010600|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	U04294|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109012|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1	BC109013|Kcnh1|16510|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm9_v1_chrX_+_104115963_104116162	1.54317	CCCUGAG	NM_175271|Lpar4|78134|lysophosphatidic acid receptor 4	BC052178|Lpar4|78134|lysophosphatidic acid receptor 4	AK051709|Lpar4|78134|lysophosphatidic acid receptor 4	AK019967|Lpar4|78134|lysophosphatidic acid receptor 4	AK045289|Lpar4|78134|lysophosphatidic acid receptor 4	BC069178|Lpar4|78134|lysophosphatidic acid receptor 4	BC138893|Lpar4|78134|lysophosphatidic acid receptor 4	BC138894|Lpar4|78134|lysophosphatidic acid receptor 4
mm9_v1_chr11_+_58144207_58144291	1.53904	CCCUGAG	AK156171|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK159202|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK172333|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_001161338|Sh3bp5l|79566|SH3 binding domain protein 5 like	NM_024480|Sh3bp5l|79566|SH3 binding domain protein 5 like	BC094418|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK166491|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK144928|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK086088|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK150129|Sh3bp5l|79566|SH3 binding domain protein 5 like	AK167203|Sh3bp5l|79566|SH3 binding domain protein 5 like
mm9_v1_chr15_+_100446018_100446129	1.53507	CCCUGAG	AK002595|Dazap2|23994|DAZ associated protein 2	AK145398|Dazap2|23994|DAZ associated protein 2	AK146970|Dazap2|23994|DAZ associated protein 2	L10906|Dazap2|23994|DAZ associated protein 2	AK088916|Dazap2|23994|DAZ associated protein 2	AK132139|Dazap2|23994|DAZ associated protein 2	AK137246|Dazap2|23994|DAZ associated protein 2	BC014808|Dazap2|23994|DAZ associated protein 2	NM_011873|Dazap2|23994|DAZ associated protein 2	BC083347|Dazap2|23994|DAZ associated protein 2	AF085348|Dazap2|23994|DAZ associated protein 2
mm9_v1_chr7_+_51846254_51846289	1.5349	CCCUGAG	NM_008422|Kcnc3|16504|potassium voltage gated channel, Shaw-related subfamily, member 3
mm9_v1_chr11_+_102622745_102622752	1.52577	CCCUGAG	AK157926|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_001110778|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_009613|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr1_-_134439500_134439516	1.51775	CCCUGAG	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr18_-_73975022_73975140	1.50038	CCCUGAG	BC004709|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	NM_145494|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK043103|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK171157|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK042289|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK039906|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK050933|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK050980|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK077746|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK156403|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK080403|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial	AK162126|Me2|107029|malic enzyme 2, NAD(+)-dependent, mitochondrial
mm9_v1_chr18_-_66451420_66451491	1.49878	CCCUGAG	AK039742|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC103803|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC152322|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK220435|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK035153|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK028377|Ccbe1|320924|collagen and calcium binding EGF domains 1	NM_178793|Ccbe1|320924|collagen and calcium binding EGF domains 1
mm9_v1_chr5_+_115791215_115791352	1.46981	CCCUGAG	AK007514|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	NM_026933|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	U61156|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	BC030325|Triap1|69076|TP53 regulated inhibitor of apoptosis 1
mm9_v1_chr3_+_95032685_95032873	1.46605	CCCUGAG	AK004859|Cdc42se1|57912|CDC42 small effector 1	NM_172395|Cdc42se1|57912|CDC42 small effector 1	AK019052|Cdc42se1|57912|CDC42 small effector 1	AK028573|Cdc42se1|57912|CDC42 small effector 1	BC029194|Cdc42se1|57912|CDC42 small effector 1	BC060964|Cdc42se1|57912|CDC42 small effector 1	NM_001038708|Cdc42se1|57912|CDC42 small effector 1
mm9_v1_chr12_-_28027541_28027588	1.44234	CCCUGAG	AK146514|Sox11|20666|SRY-box containing gene 11	AF009414|Sox11|20666|SRY-box containing gene 11	BC078643|Sox11|20666|SRY-box containing gene 11	AK165693|Sox11|20666|SRY-box containing gene 11	AK165005|Sox11|20666|SRY-box containing gene 11	NM_009234|Sox11|20666|SRY-box containing gene 11
mm9_v1_chr17_-_46419939_46419978	1.39696	CCCUGAG	AK169889|Tjap1|74094|tight junction associated protein 1	AK164925|Tjap1|74094|tight junction associated protein 1	BC023316|Tjap1|74094|tight junction associated protein 1	AK002882|Tjap1|74094|tight junction associated protein 1	NM_028751|Tjap1|74094|tight junction associated protein 1
mm9_v1_chr8_-_4325051_4325113	1.38796	CCCUGAG	AK011870|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK080365|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK075818|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	AK034536|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)	NM_010485|Elavl1|15568|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
mm9_v1_chr12_-_77811533_77811533	1.37574	CCCUGAG	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr14_+_31528800_31528932	1.37531	CCCUGAG	AK154826|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166532|Sfmbt1|54650|Scm-like with four mbt domains 1	BC036972|Sfmbt1|54650|Scm-like with four mbt domains 1	AK142330|Sfmbt1|54650|Scm-like with four mbt domains 1	BC018217|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr4_+_115511802_115511871	1.35335	CCCUGAG	AK141298|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK010697|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK169982|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	Y11091|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	AK155934|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	NM_021461|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1	BC021369|Mknk1|17346|MAP kinase-interacting serine/threonine kinase 1
mm9_v1_chr7_+_87171113_87171302	1.35106	CCCUGAG	NM_175433|Zfp710|209225|zinc finger protein 710	AK155416|Zfp710|209225|zinc finger protein 710	BC060641|Zfp710|209225|zinc finger protein 710	AK083979|Zfp710|209225|zinc finger protein 710	BC058640|Zfp710|209225|zinc finger protein 710
mm9_v1_chr14_+_31528352_31528352	1.34919	CCCUGAG	AK160573|Sfmbt1|54650|Scm-like with four mbt domains 1	NM_001166531|Sfmbt1|54650|Scm-like with four mbt domains 1
mm9_v1_chr19_+_40969176_40969231	1.34783	CCCUGAG	AK087532|E130314M14Rik|449522|RIKEN cDNA E130314M14 gene	AK041506|Zfp518a|72672|zinc finger protein 518A	NM_028319|Zfp518a|72672|zinc finger protein 518A
mm9_v1_chr19_-_7315495_7315711	1.3456	CCCUGAG	AK202154|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK035418|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033510|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK170548|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033896|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK089209|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK162625|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	BC020020|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK016504|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	NM_027643|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm9_v1_chr10_-_120913138_120913382	1.33735	CCCUGAG	AK167627|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AF332864|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC011511|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	NM_138956|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC071204|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AK155495|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC055023|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3
mm9_v1_chr14_+_56503783_56503825	1.33246	CCCUGAG	AK136301|Khnyn|219094|KH and NYN domain containing	AK033704|Khnyn|219094|KH and NYN domain containing	NM_027143|Khnyn|219094|KH and NYN domain containing	AK047054|Khnyn|219094|KH and NYN domain containing	BC116260|Khnyn|219094|KH and NYN domain containing	BC116261|Khnyn|219094|KH and NYN domain containing
mm9_v1_chr7_+_52471122_52471152	1.3285	CCCUGAG	D50563|Tead2|21677|TEA domain family member 2	NM_011565|Tead2|21677|TEA domain family member 2
mm9_v1_chr15_+_102236709_102236810	1.32461	CCCUGAG	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr14_+_27399015_27399092	1.31456	CCCUGAG	AK054295|Fam116a|211922|family with sequence similarity 116, member A	NM_001134465|Fam116a|211922|family with sequence similarity 116, member A	NM_145969|Fam116a|211922|family with sequence similarity 116, member A	AK132219|Fam116a|211922|family with sequence similarity 116, member A	AK131163|Fam116a|211922|family with sequence similarity 116, member A	BC025603|Fam116a|211922|family with sequence similarity 116, member A	AK161908|Fam116a|211922|family with sequence similarity 116, member A	AK054197|Fam116a|211922|family with sequence similarity 116, member A
mm9_v1_chr9_+_62686569_62686663	1.31061	CCCUGAG	AK154414|Cln6|76524|ceroid-lipofuscinosis, neuronal 6	NM_001033175|Cln6|76524|ceroid-lipofuscinosis, neuronal 6	AK154551|Cln6|76524|ceroid-lipofuscinosis, neuronal 6
mm9_v1_chr10_-_20444654_20444883	1.30759	CCCUGAG	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr19_-_12576485_12576634	1.27949	CCCUGAG	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chrX_-_133527570_133527593	1.27886	CCCUGAG	NM_001114179|Mcart6|67062|mitochondrial carrier triple repeat 6
mm9_v1_chr4_-_128925666_128925738	1.27287	CCCUGAG	AK154932|C77080|97130|expressed sequence C77080	NM_001033189|C77080|97130|expressed sequence C77080
mm9_v1_chrX_-_9240025_9240132	1.26707	CCCUGAG	BC030032|Dynlt3|67117|dynein light chain Tctex-type 3	AK010186|Dynlt3|67117|dynein light chain Tctex-type 3	AK018842|Dynlt3|67117|dynein light chain Tctex-type 3	AK088277|Dynlt3|67117|dynein light chain Tctex-type 3	NM_025975|Dynlt3|67117|dynein light chain Tctex-type 3
mm9_v1_chr11_-_86807216_86807263	1.25472	CCCUGAG	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr8_+_107694536_107694875	1.2444	CCCUGAG	AK089094|Cbfb|12400|core binding factor beta	NM_001161456|Cbfb|12400|core binding factor beta	NM_001161457|Cbfb|12400|core binding factor beta	NM_001161458|Cbfb|12400|core binding factor beta	NM_022309|Cbfb|12400|core binding factor beta	D14570|Cbfb|12400|core binding factor beta	D14571|Cbfb|12400|core binding factor beta	D14572|Cbfb|12400|core binding factor beta	BC026749|Cbfb|12400|core binding factor beta	BC040752|Cbfb|12400|core binding factor beta	BC006763|Cbfb|12400|core binding factor beta	L03305|Cbfb|12400|core binding factor beta	L03306|Cbfb|12400|core binding factor beta
mm9_v1_chr2_-_25463924_25464009	1.2435	CCCUGAG	BC085507|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	NM_001024616|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC021476|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC020111|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081440|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK171643|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC058585|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC023692|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC051138|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK045520|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081397|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK157020|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK077311|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK143678|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene
mm9_v1_chrX_+_65931715_65931923	1.2388	CCCUGAG	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr7_+_104230260_104230335	1.23779	CCCUGAG	AF104244|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	NM_001162477|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	NM_010248|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103524|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103525|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103526|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103527|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	AB018414|Gab2|14389|growth factor receptor bound protein 2-associated protein 2
mm9_v1_chr8_+_28370796_28370880	1.23534	CCCUGAG	NM_007918|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK167836|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	U28656|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	BC002045|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK170031|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK169979|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1	AK013033|Eif4ebp1|13685|eukaryotic translation initiation factor 4E binding protein 1
mm9_v1_chr1_+_64579358_64579513	1.22502	CCCUGAG	NM_001037726|Creb1|12912|cAMP responsive element binding protein 1	NM_009952|Creb1|12912|cAMP responsive element binding protein 1	NM_133828|Creb1|12912|cAMP responsive element binding protein 1	AK079223|Creb1|12912|cAMP responsive element binding protein 1	X92497|Creb1|12912|cAMP responsive element binding protein 1	AK042595|Creb1|12912|cAMP responsive element binding protein 1	BC021649|Creb1|12912|cAMP responsive element binding protein 1	M95106|Creb1|12912|cAMP responsive element binding protein 1	AF448507|Creb1|12912|cAMP responsive element binding protein 1
mm9_v1_chr13_-_94269616_94269653	1.2096	CCCUGAG	BC069906|Jmy|57748|junction-mediating and regulatory protein	BC090835|Jmy|57748|junction-mediating and regulatory protein	NM_021310|Jmy|57748|junction-mediating and regulatory protein
mm9_v1_chr7_-_147234897_147234986	1.19238	CCCUGAG	AB221640|Msx3|17703|homeobox, msh-like 3	BC051983|Msx3|17703|homeobox, msh-like 3	BC137577|Msx3|17703|homeobox, msh-like 3	BC137578|Msx3|17703|homeobox, msh-like 3	U62523|Msx3|17703|homeobox, msh-like 3	AK012208|Msx3|17703|homeobox, msh-like 3	AK012556|Msx3|17703|homeobox, msh-like 3	NM_010836|Msx3|17703|homeobox, msh-like 3
mm9_v1_chr13_+_3633271_3633328	1.18439	CCCUGAG	AF403041|Asb13|142688|ankyrin repeat and SOCS box-containing 13	NM_178283|Asb13|142688|ankyrin repeat and SOCS box-containing 13	AK078289|Asb13|142688|ankyrin repeat and SOCS box-containing 13	BC018240|Asb13|142688|ankyrin repeat and SOCS box-containing 13	NM_080857|Asb13|142688|ankyrin repeat and SOCS box-containing 13
mm9_v1_chr19_+_4192077_4192212	1.16862	CCCUGAG	AK151582|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK150344|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152051|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152585|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK090070|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167538|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK159575|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	BC014828|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	U25809|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167244|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167880|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK167981|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	NM_031868|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK007932|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK152667|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK028392|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK153517|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform	AK202833|Ppp1ca|19045|protein phosphatase 1, catalytic subunit, alpha isoform
mm9_v1_chr4_-_140695648_140695720	1.16765	CCCUGAG	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr5_+_89316245_89316323	1.16674	CCCUGAG	NM_001136260|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_001197147|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	NM_018760|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	HQ204220|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	AF020195|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129863|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC148292|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4	BC129864|Slc4a4|54403|solute carrier family 4 (anion exchanger), member 4
mm9_v1_chr9_-_106691395_106691543	1.16479	CCCUGAG	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr10_+_40069113_40069226	1.16373	CCCUGAG	AK122421|Cdk19|78334|cyclin-dependent kinase 19	NM_001168304|Cdk19|78334|cyclin-dependent kinase 19	NM_198164|Cdk19|78334|cyclin-dependent kinase 19	AK053651|Cdk19|78334|cyclin-dependent kinase 19	BC137614|Cdk19|78334|cyclin-dependent kinase 19	BC144782|Cdk19|78334|cyclin-dependent kinase 19	BC080280|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr4_-_133742915_133743027	1.1312	CCCUGAG	AK085545|Ccdc21|70012|coiled-coil domain containing 21	BC008221|Ccdc21|70012|coiled-coil domain containing 21	AK030742|Ccdc21|70012|coiled-coil domain containing 21	AK141103|Ccdc21|70012|coiled-coil domain containing 21	AK010621|Ccdc21|70012|coiled-coil domain containing 21	NM_144527|Ccdc21|70012|coiled-coil domain containing 21
mm9_v1_chr5_+_148768875_148768913	1.11618	CCCUGAG	AK147457|Mtus2|77521|microtubule associated tumor suppressor candidate 2	NM_029920|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr1_-_140516239_140516335	1.10967	CCCUGAG	BC037697|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK165583|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	BC026541|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK035502|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	NM_021605|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK078639|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK088173|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7	AK149308|Nek7|59125|NIMA (never in mitosis gene a)-related expressed kinase 7
mm9_v1_chr2_-_120996813_120996890	1.10883	CCCUGAG	AK031943|Zscan29|99334|zinc finger SCAN domains 29	AK050477|Zscan29|99334|zinc finger SCAN domains 29	NM_178889|Zscan29|99334|zinc finger SCAN domains 29
mm9_v1_chrX_+_136219520_136219539	1.07291	CCCUGAG	NM_001081499|Tbc1d8b|245638|TBC1 domain family, member 8B
mm9_v1_chr15_-_93105514_93105610	1.06877	CCCUGAG	AK147387|Gxylt1|223827|glucoside xylosyltransferase 1	NM_001033275|Gxylt1|223827|glucoside xylosyltransferase 1	BC141302|Gxylt1|223827|glucoside xylosyltransferase 1	BC171972|Gxylt1|223827|glucoside xylosyltransferase 1
mm9_v1_chr17_-_74694120_74694227	1.06782	CCCUGAG	AK159560|Memo1|76890|mediator of cell motility 1	AK053089|Memo1|76890|mediator of cell motility 1	NM_133771|Memo1|76890|mediator of cell motility 1
mm9_v1_chr6_-_91066809_91066837	1.05995	CCCUGAG	AK157272|Nup210|54563|nucleoporin 210	BC052468|Nup210|54563|nucleoporin 210	AK053417|Nup210|54563|nucleoporin 210	NM_018815|Nup210|54563|nucleoporin 210
mm9_v1_chr8_-_126545208_126545336	1.05238	CCCUGAG	BC013550|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_133966|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK089463|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK154832|Taf5l|102162|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr6_-_71390592_71390638	1.05158	CCCUGAG	AK164384|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)	NM_024288|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr12_-_27100112_27100136	1.03978	CCCUGAG	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr2_-_127347102_127347108	1.03088	CCCUGAG	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr2_+_167363696_167363726	1.02324	CCCUGAG	AK144478|Snai1|20613|snail homolog 1 (Drosophila)	BC034857|Snai1|20613|snail homolog 1 (Drosophila)	NM_011427|Snai1|20613|snail homolog 1 (Drosophila)
mm9_v1_chr1_-_166237573_166237642	1.01112	CCCUGAG	AK029787|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160208|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_001160209|Blzf1|66352|basic leucine zipper nuclear factor 1	NM_025505|Blzf1|66352|basic leucine zipper nuclear factor 1	AK006544|Blzf1|66352|basic leucine zipper nuclear factor 1	AK167493|Blzf1|66352|basic leucine zipper nuclear factor 1
mm9_v1_chr10_+_128242649_128242744	1.00893	CCCUGAG	AK159388|Dnajc14|74330|DnaJ (Hsp40) homolog, subfamily C, member 14	AK083878|Dnajc14|74330|DnaJ (Hsp40) homolog, subfamily C, member 14	AK032681|Dnajc14|74330|DnaJ (Hsp40) homolog, subfamily C, member 14	AK017830|Dnajc14|74330|DnaJ (Hsp40) homolog, subfamily C, member 14	AK082579|Dnajc14|74330|DnaJ (Hsp40) homolog, subfamily C, member 14	NM_028873|Dnajc14|74330|DnaJ (Hsp40) homolog, subfamily C, member 14
mm9_v1_chr6_-_72566691_72566744	1.00753	CCCUGAG	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr11_+_98724908_98724950	1.00376	CCCUGAG	NM_197940|Wipf2|68524|WAS/WASL interacting protein family, member 2
mm9_v1_chr2_+_29917543_29917687	1.0008	CCCUGAG	BC018255|Set|56086|SET nuclear oncogene	NM_023871|Set|56086|SET nuclear oncogene	AB044937|Set|56086|SET nuclear oncogene	AK011630|Set|56086|SET nuclear oncogene	BC103791|Set|56086|SET nuclear oncogene
mm9_v1_chr9_+_43892984_43893007	0.992661	CCCUGAG	NM_198091|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr1_-_172797866_172797977	0.988838	CCCUGAG	AK020270|Atf6|226641|activating transcription factor 6	AK087000|Atf6|226641|activating transcription factor 6	AK036106|Atf6|226641|activating transcription factor 6	BC141028|Atf6|226641|activating transcription factor 6	AK036335|Atf6|226641|activating transcription factor 6	NM_001081304|Atf6|226641|activating transcription factor 6
mm9_v1_chr12_+_107022903_107023027	0.964824	CCCUGAG	NM_011112|Papola|18789|poly (A) polymerase alpha	AK028940|Papola|18789|poly (A) polymerase alpha	AK090096|Papola|18789|poly (A) polymerase alpha	AK132704|Papola|18789|poly (A) polymerase alpha	AK134552|Papola|18789|poly (A) polymerase alpha	BC060128|Papola|18789|poly (A) polymerase alpha	U58134|Papola|18789|poly (A) polymerase alpha	U52197|Papola|18789|poly (A) polymerase alpha
mm9_v1_chr10_+_82321923_82322011	0.962452	CCCUGAG	AB027565|Txnrd1|50493|thioredoxin reductase 1	AK151927|Txnrd1|50493|thioredoxin reductase 1	NM_001042513|Txnrd1|50493|thioredoxin reductase 1	NM_015762|Txnrd1|50493|thioredoxin reductase 1	AK146125|Txnrd1|50493|thioredoxin reductase 1	AK149625|Txnrd1|50493|thioredoxin reductase 1	AK168356|Txnrd1|50493|thioredoxin reductase 1	AK011902|Txnrd1|50493|thioredoxin reductase 1	AK186760|Txnrd1|50493|thioredoxin reductase 1	AK186897|Txnrd1|50493|thioredoxin reductase 1	AK194169|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr1_-_155396839_155396845	0.96188	CCCUGAG	BC022734|Npl|74091|N-acetylneuraminate pyruvate lyase	AK154216|F630010C12Rik|100038670|RIKEN cDNA F630010C12 gene	AK002734|Npl|74091|N-acetylneuraminate pyruvate lyase	NM_028749|Npl|74091|N-acetylneuraminate pyruvate lyase	AK088859|Npl|74091|N-acetylneuraminate pyruvate lyase
mm9_v1_chrX_-_48559008_48559019	0.948206	CCCUGAG	AK040522|Mbnl3|171170|muscleblind-like 3 (Drosophila)	NM_134163|Mbnl3|171170|muscleblind-like 3 (Drosophila)	AK088971|Mbnl3|171170|muscleblind-like 3 (Drosophila)
mm9_v1_chr12_-_91976586_91976877	0.944871	CCCUGAG	AK032038|Dio2|13371|deiodinase, iodothyronine, type II	AK045607|Dio2|13371|deiodinase, iodothyronine, type II	AF177196|Dio2|13371|deiodinase, iodothyronine, type II	AF177197|Dio2|13371|deiodinase, iodothyronine, type II	AF093137|Dio2|13371|deiodinase, iodothyronine, type II	BC125383|Dio2|13371|deiodinase, iodothyronine, type II	BC125385|Dio2|13371|deiodinase, iodothyronine, type II	AF096875|Dio2|13371|deiodinase, iodothyronine, type II	NM_010050|Dio2|13371|deiodinase, iodothyronine, type II
mm9_v1_chr11_+_100981384_100981545	0.94386	CCCUGAG	AK160125|Tubg1|103733|tubulin, gamma 1	BC006581|Tubg1|103733|tubulin, gamma 1	NM_134024|Tubg1|103733|tubulin, gamma 1	AK183189|Tubg1|103733|tubulin, gamma 1	AK192509|Tubg1|103733|tubulin, gamma 1	AK154019|Tubg1|103733|tubulin, gamma 1	AK196283|Tubg1|103733|tubulin, gamma 1
mm9_v1_chr3_-_152003317_152003373	0.939637	CCCUGAG	BC138328|Fam73a|215708|family with sequence similarity 73, member A	BC138329|Fam73a|215708|family with sequence similarity 73, member A	AK166051|Fam73a|215708|family with sequence similarity 73, member A	BC059928|Fam73a|215708|family with sequence similarity 73, member A	AK044739|Fam73a|215708|family with sequence similarity 73, member A	BC098205|Fam73a|215708|family with sequence similarity 73, member A	AK045347|Fam73a|215708|family with sequence similarity 73, member A	AK143366|Fam73a|215708|family with sequence similarity 73, member A	AK085017|Fam73a|215708|family with sequence similarity 73, member A	NM_001162375|Fam73a|215708|family with sequence similarity 73, member A	NM_174868|Fam73a|215708|family with sequence similarity 73, member A
mm9_v1_chr9_-_44607274_44607334	0.922506	CCCUGAG	AK090375|Tmem25|71687|transmembrane protein 25	AK165827|Tmem25|71687|transmembrane protein 25	AK002841|Tmem25|71687|transmembrane protein 25	NM_027865|Tmem25|71687|transmembrane protein 25	BC060057|Tmem25|71687|transmembrane protein 25	BC060243|Tmem25|71687|transmembrane protein 25	AK154206|Tmem25|71687|transmembrane protein 25	AK165199|Tmem25|71687|transmembrane protein 25
mm9_v1_chr11_+_87881747_87881842	0.915932	CCCUGAG	AF104410|Vezf1|22344|vascular endothelial zinc finger 1	NM_016686|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr9_+_32503600_32503674	0.910439	CCCUGAG	NM_001038642|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	NM_011808|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	BC010588|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK168247|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain
mm9_v1_chr11_-_82704059_82704118	0.909717	CCCUGAG	AK036272|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB007040|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052828|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052829|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052830|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052831|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052832|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052833|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AB052834|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	BC049136|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK147759|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AF034955|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627687|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	EU627688|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	Y15570|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK017835|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	AK138553|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)	NM_011235|Rad51l3|19364|RAD51-like 3 (S. cerevisiae)
mm9_v1_chr11_-_45979836_45979862	0.905707	CCCUGAG	AK035736|Nipal4|214112|NIPA-like domain containing 4	BC139819|Nipal4|214112|NIPA-like domain containing 4	AK035561|Nipal4|214112|NIPA-like domain containing 4	NM_172524|Nipal4|214112|NIPA-like domain containing 4
mm9_v1_chr3_-_50247306_50247534	0.896439	CCCUGAG	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr5_-_98459943_98460087	0.887916	CCCUGAG	BC076595|Antxr2|71914|anthrax toxin receptor 2	NM_133738|Antxr2|71914|anthrax toxin receptor 2	AK155460|Antxr2|71914|anthrax toxin receptor 2
mm9_v1_chr11_-_120486280_120486339	0.885786	CCCUGAG	BC026403|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC040759|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026637|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026650|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AY251540|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK051725|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK135484|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	NM_153056|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)
mm9_v1_chr13_-_51889012_51889103	0.883154	CCCUGAG	BC049780|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	NM_013660|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	AK132688|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm9_v1_chr17_+_28828286_28828455	0.883034	CCCUGAG	BC012235|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168508|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168514|Mapk14|26416|mitogen-activated protein kinase 14	NM_011951|Mapk14|26416|mitogen-activated protein kinase 14	BC085303|Mapk14|26416|mitogen-activated protein kinase 14	AK089059|Mapk14|26416|mitogen-activated protein kinase 14	AK133684|Mapk14|26416|mitogen-activated protein kinase 14	AF128892|Mapk14|26416|mitogen-activated protein kinase 14	BC018227|Mapk14|26416|mitogen-activated protein kinase 14	U10871|Mapk14|26416|mitogen-activated protein kinase 14	D83073|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr9_-_26613989_26614018	0.879326	CCCUGAG	AK143057|Glb1l2|244757|galactosidase, beta 1-like 2	BC038479|Glb1l2|244757|galactosidase, beta 1-like 2	NM_153803|Glb1l2|244757|galactosidase, beta 1-like 2	AK033400|Glb1l2|244757|galactosidase, beta 1-like 2
mm9_v1_chr11_-_4494815_4494822	0.87542	CCCUGAG	NM_028860|Mtmr3|74302|myotubularin related protein 3
mm9_v1_chr19_+_6306456_6306644	0.87166	CCCUGAG	NM_001033342|Cdc42bpg|240505|CDC42 binding protein kinase gamma (DMPK-like)
mm9_v1_chrX_+_139997806_139997811	0.862901	CCCUGAG	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr15_-_79604806_79604924	0.84986	CCCUGAG	BC005426|Dnalc4|54152|dynein, axonemal, light chain 4	AK002657|Dnalc4|54152|dynein, axonemal, light chain 4	AB010031|Dnalc4|54152|dynein, axonemal, light chain 4	AK132061|Dnalc4|54152|dynein, axonemal, light chain 4	NM_017470|Dnalc4|54152|dynein, axonemal, light chain 4
mm9_v1_chr7_+_28043740_28043802	0.849055	CCCUGAG	NM_010950|Numbl|18223|numb-like
mm9_v1_chr1_+_91351373_91351428	0.848668	CCCUGAG	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr10_-_60610398_60610452	0.845231	CCCUGAG	NM_009163|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr10_-_127962914_127963016	0.833969	CCCUGAG	BC011482|Esyt1|23943|extended synaptotagmin-like protein 1	NM_011843|Esyt1|23943|extended synaptotagmin-like protein 1	AK044656|Esyt1|23943|extended synaptotagmin-like protein 1	AK088421|Esyt1|23943|extended synaptotagmin-like protein 1	AK080094|Esyt1|23943|extended synaptotagmin-like protein 1	AK152482|Esyt1|23943|extended synaptotagmin-like protein 1	AK152554|Esyt1|23943|extended synaptotagmin-like protein 1
mm9_v1_chr14_+_70930491_70930682	0.833115	CCCUGAG	AK087125|Lgi3|213469|leucine-rich repeat LGI family, member 3	NM_145219|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK132296|Lgi3|213469|leucine-rich repeat LGI family, member 3	AF515590|Lgi3|213469|leucine-rich repeat LGI family, member 3	AY174077|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK049831|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK163664|Lgi3|213469|leucine-rich repeat LGI family, member 3	AK047495|Lgi3|213469|leucine-rich repeat LGI family, member 3
mm9_v1_chr15_-_96291163_96291288	0.83146	CCCUGAG	AK129478|Scaf11|72193|SR-related CTD-associated factor 11	AK034674|Scaf11|72193|SR-related CTD-associated factor 11	BC058682|Scaf11|72193|SR-related CTD-associated factor 11	NM_028148|Scaf11|72193|SR-related CTD-associated factor 11
mm9_v1_chr2_-_26359261_26359353	0.830092	CCCUGAG	AK090118|Notch1|18128|Notch gene homolog 1 (Drosophila)	NM_008714|Notch1|18128|Notch gene homolog 1 (Drosophila)
mm9_v1_chr7_-_17613079_17613266	0.822106	CCCUGAG	U12204|Ppp5c|19060|protein phosphatase 5, catalytic subunit	BC003744|Ppp5c|19060|protein phosphatase 5, catalytic subunit	AF018262|Ppp5c|19060|protein phosphatase 5, catalytic subunit	NM_011155|Ppp5c|19060|protein phosphatase 5, catalytic subunit
mm9_v1_chr4_+_135728188_135728308	0.822029	CCCUGAG	AK087452|E2f2|242705|E2F transcription factor 2	NM_177733|E2f2|242705|E2F transcription factor 2
mm9_v1_chr7_-_107128967_107128967	0.81172	CCCUGAG	NM_175388|Rnf169|108937|ring finger protein 169
mm9_v1_chr5_-_38952777_38952930	0.808514	CCCUGAG	BC119358|Wdr1|22388|WD repeat domain 1	BC125295|Wdr1|22388|WD repeat domain 1	AK165225|Wdr1|22388|WD repeat domain 1	AK165323|Wdr1|22388|WD repeat domain 1	AK167813|Wdr1|22388|WD repeat domain 1	AK151146|Wdr1|22388|WD repeat domain 1	AF020055|Wdr1|22388|WD repeat domain 1	NM_011715|Wdr1|22388|WD repeat domain 1	AK153338|Wdr1|22388|WD repeat domain 1	AK170379|Wdr1|22388|WD repeat domain 1	AK167241|Wdr1|22388|WD repeat domain 1	AK169893|Wdr1|22388|WD repeat domain 1	AK156300|Wdr1|22388|WD repeat domain 1	AK167275|Wdr1|22388|WD repeat domain 1	AK004858|Wdr1|22388|WD repeat domain 1	AK169835|Wdr1|22388|WD repeat domain 1	BC049117|Wdr1|22388|WD repeat domain 1
mm9_v1_chr10_-_34138271_34138388	0.806727	CCCUGAG	AK164144|Nt5dc1|319638|5'-nucleotidase domain containing 1	AK161350|Nt5dc1|319638|5'-nucleotidase domain containing 1	BC098476|Nt5dc1|319638|5'-nucleotidase domain containing 1	BC125276|Nt5dc1|319638|5'-nucleotidase domain containing 1	AK049656|Nt5dc1|319638|5'-nucleotidase domain containing 1	AK077876|Nt5dc1|319638|5'-nucleotidase domain containing 1	AK145666|Nt5dc1|319638|5'-nucleotidase domain containing 1	NM_176968|Nt5dc1|319638|5'-nucleotidase domain containing 1	AK171761|Nt5dc1|319638|5'-nucleotidase domain containing 1
mm9_v1_chr1_+_75396650_75396733	0.805593	CCCUGAG	NM_001173477|Speg|11790|SPEG complex locus
mm9_v1_chr15_+_81633102_81633182	0.805481	CCCUGAG	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr7_+_149135647_149135669	0.793927	CCCUGAG	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr7_-_59261060_59261387	0.784691	CCCUGAG	AK005663|Svip|75744|small VCP/p97-interacting protein	AK029831|Svip|75744|small VCP/p97-interacting protein	BC100498|Svip|75744|small VCP/p97-interacting protein	BC049720|Svip|75744|small VCP/p97-interacting protein	AK133737|Svip|75744|small VCP/p97-interacting protein	AK018351|Svip|75744|small VCP/p97-interacting protein	AK158571|Svip|75744|small VCP/p97-interacting protein	NM_001160345|Svip|75744|small VCP/p97-interacting protein
mm9_v1_chr10_+_127114119_127114144	0.78153	CCCUGAG	BC030440|Tmem194|210035|transmembrane protein 194	NM_001113211|Tmem194|210035|transmembrane protein 194	NM_173732|Tmem194|210035|transmembrane protein 194	AK129110|Tmem194|210035|transmembrane protein 194	AK090031|Tmem194|210035|transmembrane protein 194
mm9_v1_chr1_-_24594228_24594275	0.780182	CCCUGAG	BC118970|Col19a1|12823|collagen, type XIX, alpha 1	AB000636|Col19a1|12823|collagen, type XIX, alpha 1	AK149136|Col19a1|12823|collagen, type XIX, alpha 1	NM_007733|Col19a1|12823|collagen, type XIX, alpha 1
mm9_v1_chr7_-_107520359_107520405	0.779351	CCCUGAG	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr6_+_54545104_54545338	0.77808	CCCUGAG	AK078040|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	NM_001164361|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	AK170592|Plekha8|231999|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm9_v1_chr18_+_57514370_57514505	0.772022	CCCUGAG	NM_028447|Prrc1|73137|proline-rich coiled-coil 1	AK004443|Prrc1|73137|proline-rich coiled-coil 1	AK143537|Prrc1|73137|proline-rich coiled-coil 1	AK014139|Prrc1|73137|proline-rich coiled-coil 1	BC014817|Prrc1|73137|proline-rich coiled-coil 1
mm9_v1_chr19_-_23522811_23522929	0.771219	CCCUGAG	AK035566|Mamdc2|71738|MAM domain containing 2	NM_174857|Mamdc2|71738|MAM domain containing 2	BC042773|Mamdc2|71738|MAM domain containing 2	AK154219|Mamdc2|71738|MAM domain containing 2	AK004794|Mamdc2|71738|MAM domain containing 2
mm9_v1_chr19_+_6047024_6047144	0.770176	CCCUGAG	BC080722|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK143720|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK172097|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	BC042199|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK004688|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	BC046829|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	NM_001164709|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin
mm9_v1_chr17_+_28938070_28938070	0.76082	CCCUGAG	AK147555|Brpf3|268936|bromodomain and PHD finger containing, 3	NM_001081315|Brpf3|268936|bromodomain and PHD finger containing, 3
mm9_v1_chr5_+_34064372_34064491	0.758527	CCCUGAG	NM_008010|Fgfr3|14184|fibroblast growth factor receptor 3	NM_001163215|Fgfr3|14184|fibroblast growth factor receptor 3	AK143592|Fgfr3|14184|fibroblast growth factor receptor 3	BC053056|Fgfr3|14184|fibroblast growth factor receptor 3	M81342|Fgfr3|14184|fibroblast growth factor receptor 3	X58255|Fgfr3|14184|fibroblast growth factor receptor 3
mm9_v1_chr2_+_113167862_113167938	0.755711	CCCUGAG	NM_001043322|Fmn1|14260|formin 1	NM_010230|Fmn1|14260|formin 1	AK135758|Fmn1|14260|formin 1	X53599|Fmn1|14260|formin 1
mm9_v1_chr10_+_127529818_127529845	0.750245	CCCUGAG	AK133149|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC048415|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	NM_054078|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr15_+_99501148_99501237	0.745695	CCCUGAG	BC067025|Accn2|11419|amiloride-sensitive cation channel 2, neuronal	NM_009597|Accn2|11419|amiloride-sensitive cation channel 2, neuronal
mm9_v1_chr11_+_69809250_69809521	0.742617	CCCUGAG	NM_030064|Phf23|78246|PHD finger protein 23	AK019135|Phf23|78246|PHD finger protein 23	AK170729|Phf23|78246|PHD finger protein 23	BC033533|Phf23|78246|PHD finger protein 23	AK031159|Phf23|78246|PHD finger protein 23	AY099326|Phf23|78246|PHD finger protein 23	AY099327|Phf23|78246|PHD finger protein 23
mm9_v1_chr14_+_58691522_58691522	0.735006	CCCUGAG	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr12_+_114252715_114252763	0.729898	CCCUGAG	NM_001081170|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK036581|Pacs2|217893|phosphofurin acidic cluster sorting protein 2	AK054000|Pacs2|217893|phosphofurin acidic cluster sorting protein 2
mm9_v1_chr9_-_48303353_48303470	0.715088	CCCUGAG	BC116931|Rbm7|67010|RNA binding motif protein 7	BC119038|Rbm7|67010|RNA binding motif protein 7	AK008645|Rbm7|67010|RNA binding motif protein 7	AF458961|Rbm7|67010|RNA binding motif protein 7	AK006755|Rbm7|67010|RNA binding motif protein 7	AK145381|Rbm7|67010|RNA binding motif protein 7	AK153504|Rbm7|67010|RNA binding motif protein 7	BC054774|Rbm7|67010|RNA binding motif protein 7	AK164653|Rbm7|67010|RNA binding motif protein 7	AK005200|Rbm7|67010|RNA binding motif protein 7	NM_144948|Rbm7|67010|RNA binding motif protein 7	AK151056|Rbm7|67010|RNA binding motif protein 7	AK011223|Rbm7|67010|RNA binding motif protein 7	AK151827|Rbm7|67010|RNA binding motif protein 7	AK015662|Rbm7|67010|RNA binding motif protein 7
mm9_v1_chr4_-_6917628_6917956	0.713288	CCCUGAG	AK161718|Tox|252838|thymocyte selection-associated high mobility group box	AK161578|Tox|252838|thymocyte selection-associated high mobility group box	AF472514|Tox|252838|thymocyte selection-associated high mobility group box	AK029694|Tox|252838|thymocyte selection-associated high mobility group box	AK133397|Tox|252838|thymocyte selection-associated high mobility group box	BC080732|Tox|252838|thymocyte selection-associated high mobility group box	AK038671|Tox|252838|thymocyte selection-associated high mobility group box	NM_145711|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr19_+_5041341_5041422	0.699331	CCCUGAG	AF233580|Brms1|107392|breast cancer metastasis-suppressor 1	AK076729|Brms1|107392|breast cancer metastasis-suppressor 1	BC016108|Brms1|107392|breast cancer metastasis-suppressor 1	NM_134155|Brms1|107392|breast cancer metastasis-suppressor 1	BC003485|Brms1|107392|breast cancer metastasis-suppressor 1
mm9_v1_chr9_-_114473486_114473486	0.697548	CCCUGAG	DQ005956|Trim71|636931|tripartite motif-containing 71	NM_001042503|Trim71|636931|tripartite motif-containing 71
mm9_v1_chr3_+_87329497_87329593	0.692526	CCCUGAG	NM_001083318|Etv3|27049|ets variant gene 3	NM_012051|Etv3|27049|ets variant gene 3	AF218539|Etv3|27049|ets variant gene 3	AK147552|Etv3|27049|ets variant gene 3	AK163509|Etv3|27049|ets variant gene 3	AK155080|Etv3|27049|ets variant gene 3	AK089640|Etv3|27049|ets variant gene 3	AK156824|Etv3|27049|ets variant gene 3	AK155957|Etv3|27049|ets variant gene 3	BC078636|Etv3|27049|ets variant gene 3	BC057151|Etv3|27049|ets variant gene 3
mm9_v1_chrX_-_133572810_133572840	0.69016	CCCUGAG	AK013345|Mcart6|67062|mitochondrial carrier triple repeat 6	AK028496|Mcart6|67062|mitochondrial carrier triple repeat 6	AK076279|Mcart6|67062|mitochondrial carrier triple repeat 6	AK009846|Mcart6|67062|mitochondrial carrier triple repeat 6	AK012963|Mcart6|67062|mitochondrial carrier triple repeat 6	NM_001082412|Mcart6|67062|mitochondrial carrier triple repeat 6
mm9_v1_chr4_-_118846799_118846813	0.688639	CCCUGAG	NM_001145936|Zfp691|195522|zinc finger protein 691
mm9_v1_chr17_-_56358176_56358341	0.687874	CCCUGAG	AK050021|Dpp9|224897|dipeptidylpeptidase 9	AK078301|Dpp9|224897|dipeptidylpeptidase 9	BC057631|Dpp9|224897|dipeptidylpeptidase 9	AK050023|Dpp9|224897|dipeptidylpeptidase 9	NM_172624|Dpp9|224897|dipeptidylpeptidase 9	AK039652|Dpp9|224897|dipeptidylpeptidase 9
mm9_v1_chr19_-_7044198_7044291	0.686906	CCCUGAG	U43144|Plcb3|18797|phospholipase C, beta 3	AK164300|Plcb3|18797|phospholipase C, beta 3	BC035928|Plcb3|18797|phospholipase C, beta 3	NM_008874|Plcb3|18797|phospholipase C, beta 3	AK159679|Plcb3|18797|phospholipase C, beta 3	AK220180|Plcb3|18797|phospholipase C, beta 3	AK146793|Plcb3|18797|phospholipase C, beta 3
mm9_v1_chr8_+_74659107_74659219	0.684062	CCCUGAG	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr10_-_78054639_78054708	0.680072	CCCUGAG	AK004654|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	NM_027875|Syde1|71709|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm9_v1_chr7_-_125999115_125999232	0.676874	CCCUGAG	BC055941|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK082978|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	NM_001168220|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK009230|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK083845|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK166956|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene
mm9_v1_chr6_-_126595818_126595818	0.676169	CCCUGAG	NM_010595|Kcna1|16485|potassium voltage-gated channel, shaker-related subfamily, member 1
mm9_v1_chr5_-_77380593_77380602	0.675908	CCCUGAG	AK159141|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	AK159859|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase	NM_172146|Ppat|231327|phosphoribosyl pyrophosphate amidotransferase
mm9_v1_chr11_-_76391228_76391228	0.675411	CCCUGAG	NM_198894|Abr|109934|active BCR-related gene
mm9_v1_chr12_-_88541151_88541189	0.675144	CCCUGAG	AK147378|Tmed8|382620|transmembrane emp24 domain containing 8	NM_001033475|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr3_-_108218411_108218411	0.67469	CCCUGAG	AB028499|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_001004177|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_017392|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm9_v1_chr5_-_147606370_147606581	0.66371	CCCUGAG	AK035629|Usp12|22217|ubiquitin specific peptidase 12	AK167153|Usp12|22217|ubiquitin specific peptidase 12	BC068136|Usp12|22217|ubiquitin specific peptidase 12	NM_011669|Usp12|22217|ubiquitin specific peptidase 12	AK006739|Usp12|22217|ubiquitin specific peptidase 12
mm9_v1_chr9_+_21528037_21528221	0.662042	CCCUGAG	NM_010700|Ldlr|16835|low density lipoprotein receptor	AK076243|Ldlr|16835|low density lipoprotein receptor	AK151968|Ldlr|16835|low density lipoprotein receptor	BC053041|Ldlr|16835|low density lipoprotein receptor	AK170264|Ldlr|16835|low density lipoprotein receptor	AK149950|Ldlr|16835|low density lipoprotein receptor	AK160006|Ldlr|16835|low density lipoprotein receptor	AK161104|Ldlr|16835|low density lipoprotein receptor	AK166466|Ldlr|16835|low density lipoprotein receptor	AK018697|Ldlr|16835|low density lipoprotein receptor	AK152103|Ldlr|16835|low density lipoprotein receptor	X64414|Ldlr|16835|low density lipoprotein receptor	BC019207|Ldlr|16835|low density lipoprotein receptor	AK184620|Ldlr|16835|low density lipoprotein receptor	AF425607|Ldlr|16835|low density lipoprotein receptor	Z19521|Ldlr|16835|low density lipoprotein receptor
mm9_v1_chr4_+_130037378_130037455	0.657227	CCCUGAG	NM_025645|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK002371|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK152287|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK152352|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK169605|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK148443|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	BC058365|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK004277|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK136135|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)
mm9_v1_chr4_+_53838895_53838980	0.652454	CCCUGAG	NM_028053|Tmem38b|52076|transmembrane protein 38B	AK005479|Tmem38b|52076|transmembrane protein 38B	BC011072|Tmem38b|52076|transmembrane protein 38B	AK150377|Tmem38b|52076|transmembrane protein 38B	AK150892|Tmem38b|52076|transmembrane protein 38B	AK153075|Tmem38b|52076|transmembrane protein 38B	AB261159|Tmem38b|52076|transmembrane protein 38B
mm9_v1_chr11_-_70817905_70817971	0.641591	CCCUGAG	BC027842|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	BC052172|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK035177|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	NM_178367|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK087592|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33
mm9_v1_chr5_-_125659422_125659602	0.638455	CCCUGAG	AF125671|Ncor2|20602|nuclear receptor co-repressor 2	BC057218|Ncor2|20602|nuclear receptor co-repressor 2	AK147394|Ncor2|20602|nuclear receptor co-repressor 2	AF113002|Ncor2|20602|nuclear receptor co-repressor 2	NM_011424|Ncor2|20602|nuclear receptor co-repressor 2
mm9_v1_chr9_+_118515769_118515921	0.637128	CCCUGAG	AJ344342|Itga9|104099|integrin alpha 9	NM_133721|Itga9|104099|integrin alpha 9	BC150824|Itga9|104099|integrin alpha 9
mm9_v1_chr14_-_119105434_119105469	0.635008	CCCUGAG	NM_001033336|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4	NM_001163676|Abcc4|239273|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm9_v1_chr6_+_83115900_83115968	0.625043	CCCUGAG	NM_001198866|Dctn1|13191|dynactin 1	NM_001198867|Dctn1|13191|dynactin 1	AK171376|Dctn1|13191|dynactin 1	BC066061|Dctn1|13191|dynactin 1	AK172261|Dctn1|13191|dynactin 1
mm9_v1_chrX_-_110299092_110299131	0.618299	CCCUGAG	BC047461|Chm|12662|choroidermia	AK035956|Chm|12662|choroidermia	AK141830|Chm|12662|choroidermia	AF218084|Chm|12662|choroidermia	NM_018818|Chm|12662|choroidermia	AK021238|Chm|12662|choroidermia
mm9_v1_chr16_+_23224804_23224864	0.617303	CCCUGAG	BC092222|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1	NM_145933|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1
mm9_v1_chr11_-_76577056_76577075	0.61248	CCCUGAG	BC008542|Gosr1|53334|golgi SNAP receptor complex member 1	NM_016810|Gosr1|53334|golgi SNAP receptor complex member 1	AK134515|Gosr1|53334|golgi SNAP receptor complex member 1	AK133836|Gosr1|53334|golgi SNAP receptor complex member 1	AK161386|Gosr1|53334|golgi SNAP receptor complex member 1	AF079901|Gosr1|53334|golgi SNAP receptor complex member 1	BC051661|Gosr1|53334|golgi SNAP receptor complex member 1
mm9_v1_chr4_-_135577545_135577644	0.611335	CCCUGAG	AB025015|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	AK147088|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	BC049885|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	AK036592|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	AK145994|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3	NM_013736|Tceb3|27224|transcription elongation factor B (SIII), polypeptide 3
mm9_v1_chr10_-_105011439_105011534	0.609906	CCCUGAG	BC092226|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK052344|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK135552|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	NM_177368|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr15_+_75447114_75447188	0.608091	CCCUGAG	NM_001044718|Zfp41|22701|zinc finger protein 41	NM_011759|Zfp41|22701|zinc finger protein 41	AK030420|Zfp41|22701|zinc finger protein 41	BC053927|Zfp41|22701|zinc finger protein 41
mm9_v1_chr4_-_118846460_118846468	0.598664	CCCUGAG	AK032431|Zfp691|195522|zinc finger protein 691	AK171649|Zfp691|195522|zinc finger protein 691	NM_001145935|Zfp691|195522|zinc finger protein 691	NM_183140|Zfp691|195522|zinc finger protein 691
mm9_v1_chr8_-_23509015_23509092	0.59602	CCCUGAG	AK081243|Slc25a15|18408|solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	AK052758|Slc25a15|18408|solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	AK154988|Slc25a15|18408|solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	NM_181325|Slc25a15|18408|solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15
mm9_v1_chr8_-_42219037_42219129	0.57781	CCCUGAG	AK040710|Mtus1|102103|mitochondrial tumor suppressor 1	AK143781|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005863|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr14_+_32308241_32308282	0.5733	CCCUGAG	AK044181|Eaf1|74427|ELL associated factor 1	NM_028932|Eaf1|74427|ELL associated factor 1
mm9_v1_chr1_-_36615225_36615265	0.563513	CCCUGAG	NM_001126047|Sema4c|20353|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm9_v1_chr17_+_70871444_70871503	0.560013	CCCUGAG	NM_001128180|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK161941|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK163689|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr7_+_87169699_87169719	0.556579	CCCUGAG	AK154953|Zfp710|209225|zinc finger protein 710	NM_001145999|Zfp710|209225|zinc finger protein 710	NM_001146000|Zfp710|209225|zinc finger protein 710	AK154871|Zfp710|209225|zinc finger protein 710
mm9_v1_chr19_+_42056244_42056262	0.555019	CCCUGAG	NM_145500|Ubtd1|226122|ubiquitin domain containing 1	AK078479|Ubtd1|226122|ubiquitin domain containing 1
mm9_v1_chr5_-_148706377_148706412	0.554293	CCCUGAG	AK156898|Slc46a3|71706|solute carrier family 46, member 3	NM_027872|Slc46a3|71706|solute carrier family 46, member 3	BC006902|Slc46a3|71706|solute carrier family 46, member 3	AK004609|Slc46a3|71706|solute carrier family 46, member 3
mm9_v1_chr18_+_33098694_33098843	0.553065	CCCUGAG	NM_009793|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	AK030219|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	BC070420|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr3_-_97628441_97628543	0.551728	CCCUGAG	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr13_+_47289371_47289389	0.550507	CCCUGAG	AK052846|Rnf144b|218215|ring finger protein 144B	NM_001170643|Rnf144b|218215|ring finger protein 144B	AK040939|Rnf144b|218215|ring finger protein 144B	BC025007|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr1_+_132613903_132614127	0.545121	CCCUGAG	AK036938|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK036991|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	NM_178691|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC139034|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK044678|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC099948|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK053730|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm9_v1_chr8_+_98157458_98157482	0.544992	CCCUGAG	AK019225|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	AK160606|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	NM_030198|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	BC039794|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)	BC064746|Gins3|78833|GINS complex subunit 3 (Psf3 homolog)
mm9_v1_chr9_-_50425561_50425568	0.543362	CCCUGAG	NM_001134902|AU019823|270156|expressed sequence AU019823	NM_212449|AU019823|270156|expressed sequence AU019823
mm9_v1_chr13_+_47218048_47218098	0.541086	CCCUGAG	AK038964|Rnf144b|218215|ring finger protein 144B	AK053529|Rnf144b|218215|ring finger protein 144B	NM_146042|Rnf144b|218215|ring finger protein 144B
mm9_v1_chr5_-_115608153_115608220	0.540984	CCCUGAG	AK031525|Mlec|109154|malectin	AK075940|Mlec|109154|malectin	NM_175403|Mlec|109154|malectin
mm9_v1_chr2_-_150434141_150434304	0.535883	CCCUGAG	AK189217|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AK009057|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	NM_027977|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	BC055706|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AJ310638|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene	AK154266|2310001A20Rik|71881|RIKEN cDNA 2310001A20 gene
mm9_v1_chr9_-_96918641_96918773	0.535014	CCCUGAG	BC055705|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AK142195|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	AF403039|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4	NM_145134|Spsb4|211949|splA/ryanodine receptor domain and SOCS box containing 4
mm9_v1_chr3_-_86978431_86978668	0.531423	CCCUGAG	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr13_-_112599181_112599204	0.527625	CCCUGAG	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr19_+_6276885_6276962	0.522394	CCCUGAG	AK171047|Ehd1|13660|EH-domain containing 1	NM_010119|Ehd1|13660|EH-domain containing 1	AF173156|Ehd1|13660|EH-domain containing 1	AK167721|Ehd1|13660|EH-domain containing 1	AF099186|Ehd1|13660|EH-domain containing 1	AK154651|Ehd1|13660|EH-domain containing 1	AK160535|Ehd1|13660|EH-domain containing 1	AK166701|Ehd1|13660|EH-domain containing 1	AK159943|Ehd1|13660|EH-domain containing 1	AK077536|Ehd1|13660|EH-domain containing 1	AK012896|Ehd1|13660|EH-domain containing 1	AK159191|Ehd1|13660|EH-domain containing 1	AK168610|Ehd1|13660|EH-domain containing 1	AK172539|Ehd1|13660|EH-domain containing 1	BC043332|Ehd1|13660|EH-domain containing 1	BC037094|Ehd1|13660|EH-domain containing 1	BC054828|Ehd1|13660|EH-domain containing 1	AK152821|Ehd1|13660|EH-domain containing 1
mm9_v1_chr1_-_132994093_132994119	0.519182	CCCUGAG	X76850|Mapkapk2|17164|MAP kinase-activated protein kinase 2	BC063064|Mapkapk2|17164|MAP kinase-activated protein kinase 2	NM_008551|Mapkapk2|17164|MAP kinase-activated protein kinase 2
mm9_v1_chr14_-_70205351_70205356	0.517987	CCCUGAG	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr13_+_14046883_14047111	0.517856	CCCUGAG	AK044785|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK151677|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK153362|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK035259|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK084275|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK085691|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK134868|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK167635|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	NM_178640|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	BC085110|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK041022|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AB116655|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK144880|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
mm9_v1_chr10_-_44178474_44178587	0.504835	CCCUGAG	AK133503|Prdm1|12142|PR domain containing 1, with ZNF domain	BC129801|Prdm1|12142|PR domain containing 1, with ZNF domain	NM_007548|Prdm1|12142|PR domain containing 1, with ZNF domain	U08185|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr9_-_44113704_44113766	0.504157	CCCUGAG	BC029091|Hinfp|102423|histone H4 transcription factor	AK049348|Hinfp|102423|histone H4 transcription factor	AK049633|Hinfp|102423|histone H4 transcription factor	NM_172162|Hinfp|102423|histone H4 transcription factor
mm9_v1_chr10_-_80958977_80959145	0.502909	CCCUGAG	AK019409|Ncln|103425|nicalin homolog (zebrafish)	AK048954|Ncln|103425|nicalin homolog (zebrafish)	BC019501|Ncln|103425|nicalin homolog (zebrafish)	NM_134009|Ncln|103425|nicalin homolog (zebrafish)	AK128887|Ncln|103425|nicalin homolog (zebrafish)
mm9_v1_chr4_-_109959366_109959438	0.492093	CCCUGAG	BC048159|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163399|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_010488|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr5_-_36826896_36826947	0.489154	CCCUGAG	NM_001170454|Tada2b|231151|transcriptional adaptor 2B
mm9_v1_chrX_+_137491455_137491457	0.478716	CCCUGAG	AK162404|Atg4a|666468|autophagy-related 4A (yeast)	BC089500|Atg4a|666468|autophagy-related 4A (yeast)	NM_174875|Atg4a|666468|autophagy-related 4A (yeast)	AK041379|Atg4a|666468|autophagy-related 4A (yeast)
mm9_v1_chr5_-_46247789_46247790	0.476465	CCCUGAG	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr11_-_76384852_76384920	0.471177	CCCUGAG	AK142364|Abr|109934|active BCR-related gene	NM_198895|Abr|109934|active BCR-related gene
mm9_v1_chr11_+_94852523_94852536	0.468263	CCCUGAG	AY508450|Ppp1r9b|217124|protein phosphatase 1, regulatory subunit 9B	NM_172261|Ppp1r9b|217124|protein phosphatase 1, regulatory subunit 9B
mm9_v1_chr5_+_32913539_32913707	0.46567	CCCUGAG	AK035612|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK031316|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK052478|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	NM_009535|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	X67677|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	BC010594|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm9_v1_chr14_+_70977443_70977712	0.458933	CCCUGAG	AK137014|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK089446|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	NM_153136|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK155086|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK157937|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK145997|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18
mm9_v1_chr4_-_109960078_109960115	0.457917	CCCUGAG	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr9_+_106270889_106271052	0.456219	CCCUGAG	AK140372|Dusp7|235584|dual specificity phosphatase 7	NM_153459|Dusp7|235584|dual specificity phosphatase 7
mm9_v1_chr3_+_108456817_108456934	0.455846	CCCUGAG	NM_145543|Clcc1|229725|chloride channel CLIC-like 1	AK169803|Clcc1|229725|chloride channel CLIC-like 1	NM_001177771|Clcc1|229725|chloride channel CLIC-like 1	AK090092|Clcc1|229725|chloride channel CLIC-like 1	AK143631|Clcc1|229725|chloride channel CLIC-like 1	AK171296|Clcc1|229725|chloride channel CLIC-like 1	NM_001177770|Clcc1|229725|chloride channel CLIC-like 1	AK179081|Clcc1|229725|chloride channel CLIC-like 1
mm9_v1_chr1_+_134942585_134942602	0.453994	CCCUGAG	AK165803|Pik3c2b|240752|phosphoinositide-3-kinase, class 2, beta polypeptide	NM_001099276|Pik3c2b|240752|phosphoinositide-3-kinase, class 2, beta polypeptide
mm9_v1_chr1_-_158649020_158649095	0.453742	CCCUGAG	AK132149|Fam20b|215015|family with sequence similarity 20, member B	NM_145413|Fam20b|215015|family with sequence similarity 20, member B	AK034081|Fam20b|215015|family with sequence similarity 20, member B	BC019381|Fam20b|215015|family with sequence similarity 20, member B
mm9_v1_chr9_+_103014374_103014418	0.451805	CCCUGAG	BC060618|Rab6b|270192|RAB6B, member RAS oncogene family	NM_173781|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr1_+_173180542_173180557	0.449511	CCCUGAG	AK028364|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK083534|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	NM_172845|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK157287|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK164900|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm9_v1_chr9_-_62384846_62384857	0.448691	CCCUGAG	AK087414|Coro2b|235431|coronin, actin binding protein, 2B	NM_175484|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr15_-_31297286_31297513	0.44823	CCCUGAG	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr11_+_77851417_77851587	0.443002	CCCUGAG	AK170557|Flot2|14252|flotillin 2	NM_001040403|Flot2|14252|flotillin 2	NM_008028|Flot2|14252|flotillin 2	AK030199|Flot2|14252|flotillin 2	BC070423|Flot2|14252|flotillin 2	AK004589|Flot2|14252|flotillin 2	AK149530|Flot2|14252|flotillin 2	AK187814|Flot2|14252|flotillin 2	AK213895|Flot2|14252|flotillin 2
mm9_v1_chr8_-_83538732_83538837	0.436665	CCCUGAG	BC058784|Usp38|74841|ubiquitin specific peptidase 38	BC066786|Usp38|74841|ubiquitin specific peptidase 38	AK129464|Usp38|74841|ubiquitin specific peptidase 38	AK049287|Usp38|74841|ubiquitin specific peptidase 38	AK028904|Usp38|74841|ubiquitin specific peptidase 38	BC057122|Usp38|74841|ubiquitin specific peptidase 38	AK142200|Usp38|74841|ubiquitin specific peptidase 38	BC054404|Usp38|74841|ubiquitin specific peptidase 38	NM_027554|Usp38|74841|ubiquitin specific peptidase 38	AK054116|Usp38|74841|ubiquitin specific peptidase 38	AK139639|Usp38|74841|ubiquitin specific peptidase 38	AK052219|Usp38|74841|ubiquitin specific peptidase 38
mm9_v1_chr1_+_193542261_193542399	0.435925	CCCUGAG	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr2_+_154959216_154959300	0.435742	CCCUGAG	NM_008395|Itch|16396|itchy, E3 ubiquitin protein ligase	AK082003|Itch|16396|itchy, E3 ubiquitin protein ligase	AK163006|Itch|16396|itchy, E3 ubiquitin protein ligase	AK141800|Itch|16396|itchy, E3 ubiquitin protein ligase	AK037940|Itch|16396|itchy, E3 ubiquitin protein ligase	BC062934|Itch|16396|itchy, E3 ubiquitin protein ligase	AK020167|Itch|16396|itchy, E3 ubiquitin protein ligase	AK220164|Itch|16396|itchy, E3 ubiquitin protein ligase	AK048303|Itch|16396|itchy, E3 ubiquitin protein ligase	BC064678|Itch|16396|itchy, E3 ubiquitin protein ligase	AF037454|Itch|16396|itchy, E3 ubiquitin protein ligase
mm9_v1_chr17_-_46766302_46766478	0.434795	CCCUGAG	AF531873|Ptk7|71461|PTK7 protein tyrosine kinase 7	AK053044|Ptk7|71461|PTK7 protein tyrosine kinase 7	AK087891|Ptk7|71461|PTK7 protein tyrosine kinase 7	AK163135|Ptk7|71461|PTK7 protein tyrosine kinase 7	BC076578|Ptk7|71461|PTK7 protein tyrosine kinase 7	NM_175168|Ptk7|71461|PTK7 protein tyrosine kinase 7
mm9_v1_chr1_-_82287990_82288082	0.43118	CCCUGAG	AK045317|Irs1|16367|insulin receptor substrate 1	NM_010570|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr4_-_110024513_110024515	0.430483	CCCUGAG	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr2_-_125608472_125608605	0.425597	CCCUGAG	BC095939|Secisbp2l|70354|SECIS binding protein 2-like	AK145135|Secisbp2l|70354|SECIS binding protein 2-like	AK169713|Secisbp2l|70354|SECIS binding protein 2-like	BC141056|Secisbp2l|70354|SECIS binding protein 2-like	AK049924|Secisbp2l|70354|SECIS binding protein 2-like	NM_177608|Secisbp2l|70354|SECIS binding protein 2-like
mm9_v1_chr5_-_151992724_151992782	0.42417	CCCUGAG	AK148227|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	AK050259|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_001163493|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_146258|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	BC027830|Stard13|243362|StAR-related lipid transfer (START) domain containing 13
mm9_v1_chr11_-_82684653_82684724	0.420158	CCCUGAG	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr15_-_12754300_12754424	0.41825	CCCUGAG	AK036721|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC119058|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC137759|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK144748|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK037867|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC028769|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	BC099607|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK081625|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK054133|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK171821|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK163412|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK035859|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK038561|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK078182|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK020074|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK152195|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	NM_001166360|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	NM_029998|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene	AK162187|6030458C11Rik|77877|RIKEN cDNA 6030458C11 gene
mm9_v1_chr7_+_134732211_134732297	0.417622	CCCUGAG	NM_172281|Rnf40|233900|ring finger protein 40	AK089805|Rnf40|233900|ring finger protein 40	AK154982|Rnf40|233900|ring finger protein 40	AK171462|Rnf40|233900|ring finger protein 40	AK129184|Rnf40|233900|ring finger protein 40	BC038348|Rnf40|233900|ring finger protein 40
mm9_v1_chr10_-_39862004_39862094	0.414851	CCCUGAG	AK151636|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK036743|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK144135|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151290|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK151704|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK157355|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165240|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK165579|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_001114332|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	NM_028247|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK050229|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10	AK011813|Slc16a10|72472|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm9_v1_chr15_-_84277488_84277526	0.413656	CCCUGAG	BC119234|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene	BC120551|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene	BC062953|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene	NM_001163145|1810041L15Rik|72301|RIKEN cDNA 1810041L15 gene
mm9_v1_chr1_-_170362388_170362504	0.40913	CCCUGAG	NM_008783|Pbx1|18514|pre B-cell leukemia transcription factor 1	NM_183355|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr5_+_123526279_123526440	0.406573	CCCUGAG	NM_001039723|Tmem120b|330189|transmembrane protein 120B	AK132283|Tmem120b|330189|transmembrane protein 120B	AK158123|Tmem120b|330189|transmembrane protein 120B	BC022593|Tmem120b|330189|transmembrane protein 120B	BC115785|Tmem120b|330189|transmembrane protein 120B	BC118014|Tmem120b|330189|transmembrane protein 120B	AK172110|Tmem120b|330189|transmembrane protein 120B
mm9_v1_chr10_-_60736018_60736185	0.402672	CCCUGAG	BC158014|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	BC157953|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	BC172106|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	AK145103|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	NM_001081127|Adamts14|237360|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14
mm9_v1_chr12_+_103996146_103996313	0.399074	CCCUGAG	BC094323|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK088208|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK146308|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	NM_025666|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	BC094423|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK017542|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK149989|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK011968|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK155611|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)
mm9_v1_chr2_+_58998885_58998932	0.399069	CCCUGAG	AK146720|Pkp4|227937|plakophilin 4	NM_026361|Pkp4|227937|plakophilin 4	NM_175464|Pkp4|227937|plakophilin 4
mm9_v1_chr3_+_28680223_28680237	0.391449	CCCUGAG	AY205262|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205263|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205264|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205265|Eif5a2|208691|eukaryotic translation initiation factor 5A2	NM_177586|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK036127|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr4_+_151648348_151648470	0.390255	CCCUGAG	NM_178406|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr10_+_82323085_82323203	0.389848	CCCUGAG	NM_001042514|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chrX_+_20265590_20265887	0.388272	CCCUGAG	AK143518|Cdk16|18555|cyclin-dependent kinase 16	AK051425|Cdk16|18555|cyclin-dependent kinase 16	NM_011049|Cdk16|18555|cyclin-dependent kinase 16	AK211169|Cdk16|18555|cyclin-dependent kinase 16	BC011069|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr2_+_181501718_181501871	0.387422	CCCUGAG	AK165786|Myt1|17932|myelin transcription factor 1	NM_001171616|Myt1|17932|myelin transcription factor 1	NM_008665|Myt1|17932|myelin transcription factor 1	AB082378|Myt1|17932|myelin transcription factor 1	AK082994|Myt1|17932|myelin transcription factor 1
mm9_v1_chr1_-_179178874_179178897	0.384732	CCCUGAG	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr3_+_32335072_32335127	0.384706	CCCUGAG	BC089038|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	NM_008839|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	BC130228|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	U03279|Pik3ca|18706|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm9_v1_chr10_+_127740390_127740482	0.383662	CCCUGAG	AK089001|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	NM_133992|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC075686|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK004773|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK048418|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK153343|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC079841|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK161547|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK047887|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK157800|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC020158|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	BC008521|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)	AK034635|Pan2|103135|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr3_-_96097855_96097923	0.379434	CCCUGAG	BC025535|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143154|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143155|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143156|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143157|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143158|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143159|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143160|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143161|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143162|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143163|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143164|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143165|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143166|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143167|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143168|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143169|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143170|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143171|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143172|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143173|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143174|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143175|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143176|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143177|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143178|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143179|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143180|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143181|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143186|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143187|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143188|Fcgr1|14129|Fc receptor, IgG, high affinity I	X70980|Fcgr1|14129|Fc receptor, IgG, high affinity I	M31314|Fcgr1|14129|Fc receptor, IgG, high affinity I	AK033874|Fcgr1|14129|Fc receptor, IgG, high affinity I	NM_010186|Fcgr1|14129|Fc receptor, IgG, high affinity I
mm9_v1_chr9_-_85220730_85220905	0.377259	CCCUGAG	NM_001160378|Fam46a|212943|family with sequence similarity 46, member A	AK135132|Fam46a|212943|family with sequence similarity 46, member A	NM_001160379|Fam46a|212943|family with sequence similarity 46, member A
mm9_v1_chr6_+_120786207_120786296	0.376326	CCCUGAG	AK171256|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK148007|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK031018|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK088417|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK143457|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK132774|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK047223|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	BC029016|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	NM_153516|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK165068|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)	AK168833|Bcl2l13|94044|BCL2-like 13 (apoptosis facilitator)
mm9_v1_chr18_+_22503589_22503589	0.371834	CCCUGAG	AK082659|Asxl3|211961|additional sex combs like 3 (Drosophila)	NM_001167777|Asxl3|211961|additional sex combs like 3 (Drosophila)
mm9_v1_chr1_+_36528441_36528549	0.366395	CCCUGAG	NM_033570|Cnnm4|94220|cyclin M4	AK173209|Cnnm4|94220|cyclin M4
mm9_v1_chr8_-_86760940_86760953	0.364007	CCCUGAG	BC058080|Zswim4|212168|zinc finger, SWIM domain containing 4	NM_172503|Zswim4|212168|zinc finger, SWIM domain containing 4	AK041934|Zswim4|212168|zinc finger, SWIM domain containing 4	AK052168|Zswim4|212168|zinc finger, SWIM domain containing 4	AK053663|Zswim4|212168|zinc finger, SWIM domain containing 4	AK150221|Zswim4|212168|zinc finger, SWIM domain containing 4	AK155465|Zswim4|212168|zinc finger, SWIM domain containing 4
mm9_v1_chr12_+_8778201_8778241	0.359168	CCCUGAG	NM_011519|Sdc1|20969|syndecan 1	BC010560|Sdc1|20969|syndecan 1	X15487|Sdc1|20969|syndecan 1	AK162092|Sdc1|20969|syndecan 1	AK132491|Sdc1|20969|syndecan 1
mm9_v1_chr4_-_4720451_4720507	0.358609	CCCUGAG	BC048776|Impad1|242291|inositol monophosphatase domain containing 1	NM_177730|Impad1|242291|inositol monophosphatase domain containing 1	AK045511|Impad1|242291|inositol monophosphatase domain containing 1
mm9_v1_chr7_-_108080671_108080707	0.357538	CCCUGAG	NM_001081116|Arhgef17|207212|Rho guanine nucleotide exchange factor (GEF) 17
mm9_v1_chr13_-_114408704_114408818	0.35574	CCCUGAG	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr12_+_80130149_80130201	0.354142	CCCUGAG	NM_181073|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	AK122464|Plekhh1|211945|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm9_v1_chr2_+_162757228_162757280	0.348542	CCCUGAG	NM_026499|Srsf6|67996|serine/arginine-rich splicing factor 6	AK004831|Srsf6|67996|serine/arginine-rich splicing factor 6	AK133872|Srsf6|67996|serine/arginine-rich splicing factor 6	AK171709|Srsf6|67996|serine/arginine-rich splicing factor 6	AK146293|Srsf6|67996|serine/arginine-rich splicing factor 6	AK159519|Srsf6|67996|serine/arginine-rich splicing factor 6	BC012039|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr2_+_119151519_119151564	0.348426	CCCUGAG	AK052322|Dll4|54485|delta-like 4 (Drosophila)	NM_019454|Dll4|54485|delta-like 4 (Drosophila)	AK004739|Dll4|54485|delta-like 4 (Drosophila)	AK031699|Dll4|54485|delta-like 4 (Drosophila)	AK165517|Dll4|54485|delta-like 4 (Drosophila)	AK171717|Dll4|54485|delta-like 4 (Drosophila)	BC049130|Dll4|54485|delta-like 4 (Drosophila)	AF253469|Dll4|54485|delta-like 4 (Drosophila)	BC042497|Dll4|54485|delta-like 4 (Drosophila)
mm9_v1_chr7_+_52690164_52690415	0.341705	CCCUGAG	NM_030678|Gys1|14936|glycogen synthase 1, muscle	AK169344|Gys1|14936|glycogen synthase 1, muscle	AK170404|Gys1|14936|glycogen synthase 1, muscle	AK171426|Gys1|14936|glycogen synthase 1, muscle	AK171148|Gys1|14936|glycogen synthase 1, muscle	AK170585|Gys1|14936|glycogen synthase 1, muscle	X94616|Gys1|14936|glycogen synthase 1, muscle	BC131687|Gys1|14936|glycogen synthase 1, muscle	BC131688|Gys1|14936|glycogen synthase 1, muscle	BC152550|Gys1|14936|glycogen synthase 1, muscle	U53218|Gys1|14936|glycogen synthase 1, muscle	BC019389|Gys1|14936|glycogen synthase 1, muscle
mm9_v1_chr14_+_32064648_32064674	0.337534	CCCUGAG	AK079374|Bap1|104416|Brca1 associated protein 1	AK170576|Bap1|104416|Brca1 associated protein 1	AK171561|Bap1|104416|Brca1 associated protein 1	NM_027088|Bap1|104416|Brca1 associated protein 1
mm9_v1_chr4_+_140703825_140703842	0.336724	CCCUGAG	NM_172518|Fbxo42|213499|F-box protein 42
mm9_v1_chr2_+_151931465_151931476	0.336102	CCCUGAG	AK089976|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK159226|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	NM_029688|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK159613|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK007296|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)
mm9_v1_chr5_+_64203602_64203733	0.335469	CCCUGAG	AK050792|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	AK002869|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	NM_029554|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr15_-_97738692_97738754	0.328664	CCCUGAG	BC006716|Vdr|22337|vitamin D receptor	D31969|Vdr|22337|vitamin D receptor	AK154647|Vdr|22337|vitamin D receptor	AK030339|Vdr|22337|vitamin D receptor	NM_009504|Vdr|22337|vitamin D receptor	AK156789|Vdr|22337|vitamin D receptor
mm9_v1_chr11_+_4604650_4604703	0.325226	CCCUGAG	AK051823|Zmat5|67178|zinc finger, matrin type 5	AK012098|Zmat5|67178|zinc finger, matrin type 5	NM_026015|Zmat5|67178|zinc finger, matrin type 5	AK003361|Zmat5|67178|zinc finger, matrin type 5	AK007565|Zmat5|67178|zinc finger, matrin type 5	AK013415|Zmat5|67178|zinc finger, matrin type 5	BC031796|Zmat5|67178|zinc finger, matrin type 5
mm9_v1_chr11_-_100259048_100259060	0.324929	CCCUGAG	BC040757|Jup|16480|junction plakoglobin	NM_010593|Jup|16480|junction plakoglobin	BC094461|Jup|16480|junction plakoglobin
mm9_v1_chr14_+_65977510_65977519	0.316525	CCCUGAG	AK155538|Zfp395|380912|zinc finger protein 395	NM_199029|Zfp395|380912|zinc finger protein 395
mm9_v1_chr2_-_92299870_92299954	0.315215	CCCUGAG	AK144762|Slc35c1|228368|solute carrier family 35, member C1	AK138595|Slc35c1|228368|solute carrier family 35, member C1	AK151154|Slc35c1|228368|solute carrier family 35, member C1	NM_211358|Slc35c1|228368|solute carrier family 35, member C1
mm9_v1_chr15_-_79272478_79272599	0.31483	CCCUGAG	NM_013767|Csnk1e|27373|casein kinase 1, epsilon
mm9_v1_chr11_-_51670897_51671154	0.312407	CCCUGAG	AK147453|Phf15|76901|PHD finger protein 15	AK129097|Phf15|76901|PHD finger protein 15	NM_199299|Phf15|76901|PHD finger protein 15	AK004823|Phf15|76901|PHD finger protein 15
mm9_v1_chr2_-_102026486_102026616	0.310522	CCCUGAG	AK032208|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	AK029683|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	NM_178886|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138178|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC145174|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3	BC138177|Ldlrad3|241576|low density lipoprotein receptor class A domain containing 3
mm9_v1_chr15_-_77949709_77949709	0.31049	CCCUGAG	AF077739|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2	NM_007583|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr19_-_29880498_29880498	0.310409	CCCUGAG	AK051413|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene	NM_172836|9930021J03Rik|240613|RIKEN cDNA 9930021J03 gene
mm9_v1_chr9_-_59598416_59598455	0.310011	CCCUGAG	BC037443|Senp8|71599|SUMO/sentrin specific peptidase 8	AK018606|Senp8|71599|SUMO/sentrin specific peptidase 8	AK029856|Senp8|71599|SUMO/sentrin specific peptidase 8	AK049120|Senp8|71599|SUMO/sentrin specific peptidase 8	AK136214|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172068|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172069|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172070|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_001172071|Senp8|71599|SUMO/sentrin specific peptidase 8	NM_027838|Senp8|71599|SUMO/sentrin specific peptidase 8
mm9_v1_chr8_+_113142480_113142625	0.306014	CCCUGAG	AK084520|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK171577|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK031952|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK043319|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK140191|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK171883|Vac14|234729|Vac14 homolog (S. cerevisiae)	BC052199|Vac14|234729|Vac14 homolog (S. cerevisiae)	NM_146216|Vac14|234729|Vac14 homolog (S. cerevisiae)	AK046826|Vac14|234729|Vac14 homolog (S. cerevisiae)
mm9_v1_chr12_+_111723922_111723992	0.302505	CCCUGAG	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr10_-_75395207_75395224	0.294504	CCCUGAG	NM_008606|Mmp11|17385|matrix metallopeptidase 11	Z12604|Mmp11|17385|matrix metallopeptidase 11	BC052854|Mmp11|17385|matrix metallopeptidase 11	AK142169|Mmp11|17385|matrix metallopeptidase 11	AK165778|Mmp11|17385|matrix metallopeptidase 11
mm9_v1_chr2_+_177927788_177927833	0.289273	CCCUGAG	AJ632222|Phactr3|74189|phosphatase and actin regulator 3	NM_001007154|Phactr3|74189|phosphatase and actin regulator 3	AK038449|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr13_+_55694491_55694540	0.281476	CCCUGAG	NM_026211|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK012474|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK152496|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK152581|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK153383|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK010259|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	AK169001|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	BC049282|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	BC058801|Tmed9|67511|transmembrane emp24 protein transport domain containing 9	BC004691|Tmed9|67511|transmembrane emp24 protein transport domain containing 9
mm9_v1_chr13_-_111070392_111070417	0.279929	CCCUGAG	AK014050|Rab3c|67295|RAB3C, member RAS oncogene family	NM_023852|Rab3c|67295|RAB3C, member RAS oncogene family
mm9_v1_chr6_+_118016385_118016436	0.275119	CCCUGAG	NM_027526|Rasgef1a|70727|RasGEF domain family, member 1A	BC138284|Rasgef1a|70727|RasGEF domain family, member 1A	BC145232|Rasgef1a|70727|RasGEF domain family, member 1A	BC145752|Rasgef1a|70727|RasGEF domain family, member 1A
mm9_v1_chr15_+_81977633_81977746	0.27017	CCCUGAG	AK155857|Srebf2|20788|sterol regulatory element binding factor 2	AK032847|Srebf2|20788|sterol regulatory element binding factor 2	AK053802|Srebf2|20788|sterol regulatory element binding factor 2	BC069989|Srebf2|20788|sterol regulatory element binding factor 2	BC048071|Srebf2|20788|sterol regulatory element binding factor 2	AK172219|Srebf2|20788|sterol regulatory element binding factor 2	NM_033218|Srebf2|20788|sterol regulatory element binding factor 2	BC026556|Srebf2|20788|sterol regulatory element binding factor 2	BC014730|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr3_+_145650833_145650943	0.269948	CCCUGAG	NM_001166064|Syde2|214804|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm9_v1_chr10_-_74980017_74980125	0.266871	CCCUGAG	AK040832|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC024851|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC043463|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	NM_175133|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	AK170872|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC118613|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC119795|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	AK157404|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene
mm9_v1_chr15_+_84867491_84867575	0.264836	CCCUGAG	NM_133750|Fam118a|73225|family with sequence similarity 118, member A	NM_177067|Fam118a|73225|family with sequence similarity 118, member A	AK143690|Fam118a|73225|family with sequence similarity 118, member A	AK082151|Fam118a|73225|family with sequence similarity 118, member A	BC066174|Fam118a|73225|family with sequence similarity 118, member A
mm9_v1_chr8_+_126177709_126177845	0.264012	CCCUGAG	AB051827|Rhou|69581|ras homolog gene family, member U	BC134407|Rhou|69581|ras homolog gene family, member U	NM_133955|Rhou|69581|ras homolog gene family, member U	AF378088|Rhou|69581|ras homolog gene family, member U
mm9_v1_chr2_-_58210162_58210168	0.255393	CCCUGAG	AK142396|Acvr1c|269275|activin A receptor, type IC	NM_001111030|Acvr1c|269275|activin A receptor, type IC
mm9_v1_chr5_+_117769274_117769326	0.253044	CCCUGAG	NM_001033311|Vsig10|231668|V-set and immunoglobulin domain containing 10	AK138152|Vsig10|231668|V-set and immunoglobulin domain containing 10
mm9_v1_chr2_-_31939210_31939226	0.248426	CCCUGAG	AK079514|Fam78a|241303|family with sequence similarity 78, member A	NM_175511|Fam78a|241303|family with sequence similarity 78, member A	AK077626|Fam78a|241303|family with sequence similarity 78, member A
mm9_v1_chr10_+_70810540_70810588	0.247939	CCCUGAG	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr2_+_158492854_158492905	0.241489	CCCUGAG	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr2_+_152052575_152052697	0.239128	CCCUGAG	NM_007788|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK031617|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK146032|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC060742|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	U51866|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK158077|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC069919|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	AK011501|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC026149|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide	BC089343|Csnk2a1|12995|casein kinase 2, alpha 1 polypeptide
mm9_v1_chr10_-_80134720_80134753	0.238544	CCCUGAG	BC010256|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	NM_021462|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	Y11092|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr9_+_80012837_80012863	0.237551	CCCUGAG	NM_001039546|Myo6|17920|myosin VI	AK053882|Myo6|17920|myosin VI
mm9_v1_chr6_-_21802514_21802514	0.233883	CCCUGAG	AK050737|Tspan12|269831|tetraspanin 12	NM_173007|Tspan12|269831|tetraspanin 12
mm9_v1_chr6_-_72185570_72185570	0.230813	CCCUGAG	AB046527|Atoh8|71093|atonal homolog 8 (Drosophila)	NM_153778|Atoh8|71093|atonal homolog 8 (Drosophila)
mm9_v1_chr11_-_95448869_95449017	0.227806	CCCUGAG	AF105292|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	BC038365|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	AK037248|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	NM_033217|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)
mm9_v1_chr9_+_121628258_121628322	0.220432	CCCUGAG	AK163916|Nktr|18087|natural killer tumor recognition sequence	L04289|Nktr|18087|natural killer tumor recognition sequence	NM_010918|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr8_+_36650839_36650928	0.220427	CCCUGAG	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr11_-_106128935_106128945	0.219699	CCCUGAG	BC005732|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_031878|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr3_+_102824458_102824505	0.219616	CCCUGAG	NM_001161854|Csde1|229663|cold shock domain containing E1, RNA binding	NM_144901|Csde1|229663|cold shock domain containing E1, RNA binding
mm9_v1_chr6_-_51419881_51419892	0.217697	CCCUGAG	AK049771|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK137214|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_016806|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_182650|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr19_-_7054901_7054955	0.217536	CCCUGAG	BC031824|Fkbp2|14227|FK506 binding protein 2	BC053692|Fkbp2|14227|FK506 binding protein 2	AK144284|Fkbp2|14227|FK506 binding protein 2	AK165394|Fkbp2|14227|FK506 binding protein 2	NM_008020|Fkbp2|14227|FK506 binding protein 2	NM_001166368|Fkbp2|14227|FK506 binding protein 2
mm9_v1_chr11_+_77590766_77590794	0.216806	CCCUGAG	AB026497|Myo18a|360013|myosin XVIIIA	NM_011586|Myo18a|360013|myosin XVIIIA	BC138366|Myo18a|360013|myosin XVIIIA	BC145257|Myo18a|360013|myosin XVIIIA
mm9_v1_chr1_+_187028043_187028086	0.215717	CCCUGAG	NM_001163754|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2	AK157509|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2
mm9_v1_chr4_-_135528494_135528534	0.215088	CCCUGAG	AK167478|Lypla2|26394|lysophospholipase 2	AK089112|Lypla2|26394|lysophospholipase 2	AK075590|Lypla2|26394|lysophospholipase 2	AB009653|Lypla2|26394|lysophospholipase 2	NM_011942|Lypla2|26394|lysophospholipase 2	BC068120|Lypla2|26394|lysophospholipase 2
mm9_v1_chr11_+_97524725_97524725	0.214723	CCCUGAG	NM_139311|Mllt6|246198|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm9_v1_chr6_-_118147735_118147761	0.213812	CCCUGAG	BC059012|Ret|19713|ret proto-oncogene	NM_001080780|Ret|19713|ret proto-oncogene	NM_009050|Ret|19713|ret proto-oncogene
mm9_v1_chr5_-_129514313_129514509	0.210691	CCCUGAG	BC046279|Stx2|13852|syntaxin 2	AK165552|Stx2|13852|syntaxin 2	AK146462|Stx2|13852|syntaxin 2	AK167577|Stx2|13852|syntaxin 2	AK168067|Stx2|13852|syntaxin 2	NM_007941|Stx2|13852|syntaxin 2	D10475|Stx2|13852|syntaxin 2
mm9_v1_chr9_+_56266618_56266679	0.204691	CCCUGAG	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr3_-_57455592_57455609	0.20461	CCCUGAG	BC062098|Commd2|52245|COMM domain containing 2	BC100390|Commd2|52245|COMM domain containing 2	BC080774|Commd2|52245|COMM domain containing 2	BC119316|Commd2|52245|COMM domain containing 2	BC119318|Commd2|52245|COMM domain containing 2	AK143821|Commd2|52245|COMM domain containing 2	NM_175095|Commd2|52245|COMM domain containing 2
mm9_v1_chr6_-_120443824_120443824	0.203219	CCCUGAG	AF277399|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	BC137862|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)	NM_033567|Cecr6|94047|cat eye syndrome chromosome region, candidate 6 homolog (human)
mm9_v1_chr8_+_113443764_113443921	0.202593	CCCUGAG	NM_009179|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK031052|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK034863|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK053827|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	AK029246|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2	BC066064|St3gal2|20444|ST3 beta-galactoside alpha-2,3-sialyltransferase 2
mm9_v1_chr15_+_103333554_103333728	0.200666	CCCUGAG	L01695|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent	NM_008800|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr3_-_107261815_107261829	0.199463	CCCUGAG	BC024837|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4	NM_145922|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4
mm9_v1_chr14_+_66285235_66285241	0.197447	CCCUGAG	AK133176|Scara5|71145|scavenger receptor class A, member 5 (putative)	NM_001168318|Scara5|71145|scavenger receptor class A, member 5 (putative)	NM_028903|Scara5|71145|scavenger receptor class A, member 5 (putative)
mm9_v1_chr7_+_17491838_17491885	0.1967	CCCUGAG	AK033567|Ptgir|19222|prostaglandin I receptor (IP)	NM_008967|Ptgir|19222|prostaglandin I receptor (IP)	D26157|Ptgir|19222|prostaglandin I receptor (IP)	BC094386|Ptgir|19222|prostaglandin I receptor (IP)	AK154272|Ptgir|19222|prostaglandin I receptor (IP)
mm9_v1_chr5_+_145928011_145928163	0.192405	CCCUGAG	AK046064|Cpsf4|54188|cleavage and polyadenylation specific factor 4	NM_178576|Cpsf4|54188|cleavage and polyadenylation specific factor 4
mm9_v1_chrX_+_148578716_148578819	0.191125	CCCUGAG	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr15_-_102501463_102501513	0.189753	CCCUGAG	BC081437|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK002311|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK012279|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK007747|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	AK075793|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	NM_026468|Atp5g2|67942|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)
mm9_v1_chr10_+_128370814_128370878	0.189357	CCCUGAG	NM_008398|Itga7|16404|integrin alpha 7	L23423|Itga7|16404|integrin alpha 7	AK157612|Itga7|16404|integrin alpha 7
mm9_v1_chr4_+_33118344_33118432	0.18788	CCCUGAG	AK160428|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1	NM_019586|Ube2j1|56228|ubiquitin-conjugating enzyme E2, J1
mm9_v1_chr16_-_43889756_43889795	0.185666	CCCUGAG	BC083089|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1	BC017628|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1	AK014045|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1	NM_029128|Qtrtd1|106248|queuine tRNA-ribosyltransferase domain containing 1
mm9_v1_chr2_-_155418441_155418518	0.184584	CCCUGAG	NM_008180|Gss|14854|glutathione synthetase	U35456|Gss|14854|glutathione synthetase	BC003784|Gss|14854|glutathione synthetase	AK146486|Gss|14854|glutathione synthetase	AK149577|Gss|14854|glutathione synthetase	AK169096|Gss|14854|glutathione synthetase	AK169276|Gss|14854|glutathione synthetase	AK159630|Gss|14854|glutathione synthetase
mm9_v1_chr14_-_55710878_55710884	0.18322	CCCUGAG	AB190186|Zfhx2|239102|zinc finger homeobox 2	NM_001039198|Zfhx2|239102|zinc finger homeobox 2
mm9_v1_chr1_+_74438182_74438368	0.182989	CCCUGAG	NM_153088|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	AK089478|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC049184|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC058085|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr11_-_33478890_33478984	0.182971	CCCUGAG	BC025550|Gabrp|216643|gamma-aminobutyric acid (GABA) A receptor, pi	BC027245|Gabrp|216643|gamma-aminobutyric acid (GABA) A receptor, pi	BC031196|Gabrp|216643|gamma-aminobutyric acid (GABA) A receptor, pi	BC023693|Gabrp|216643|gamma-aminobutyric acid (GABA) A receptor, pi	AK028946|Gabrp|216643|gamma-aminobutyric acid (GABA) A receptor, pi	NM_146017|Gabrp|216643|gamma-aminobutyric acid (GABA) A receptor, pi	AK160577|Gabrp|216643|gamma-aminobutyric acid (GABA) A receptor, pi
mm9_v1_chr13_-_59924405_59924507	0.180883	CCCUGAG	BC043111|Zcchc6|214290|zinc finger, CCHC domain containing 6	AK031537|Zcchc6|214290|zinc finger, CCHC domain containing 6	NM_153538|Zcchc6|214290|zinc finger, CCHC domain containing 6
mm9_v1_chr1_+_137029275_137029304	0.179631	CCCUGAG	AK083305|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7	NM_177081|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7
mm9_v1_chr2_+_30093236_30093288	0.177936	CCCUGAG	NM_177725|Lrrc8a|241296|leucine rich repeat containing 8A
mm9_v1_chr9_-_110556645_110556664	0.175623	CCCUGAG	BC157956|Nbeal2|235627|neurobeachin-like 2	BC172118|Nbeal2|235627|neurobeachin-like 2	NM_183276|Nbeal2|235627|neurobeachin-like 2
mm9_v1_chr14_+_57506630_57506655	0.175128	CCCUGAG	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr17_+_27792587_27792658	0.171913	CCCUGAG	BC014698|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_011861|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	X85124|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr16_-_32246968_32247110	0.16718	CCCUGAG	BC088738|Fbxo45|268882|F-box protein 45	NM_173439|Fbxo45|268882|F-box protein 45
mm9_v1_chr13_-_30077931_30077931	0.166286	CCCUGAG	AK133828|E2f3|13557|E2F transcription factor 3	NM_010093|E2f3|13557|E2F transcription factor 3
mm9_v1_chr10_+_80599005_80599015	0.165129	CCCUGAG	BC024815|Zbtb7a|16969|zinc finger and BTB domain containing 7a	NM_010731|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr16_-_96303958_96304070	0.163353	CCCUGAG	BC095940|Brwd1|93871|bromodomain and WD repeat domain containing 1	BC145265|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292467|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292468|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK030493|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_001103179|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_145125|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_176928|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK051870|Brwd1|93871|bromodomain and WD repeat domain containing 1
mm9_v1_chr18_+_36823713_36823835	0.159406	CCCUGAG	BC061242|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	NM_201256|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC111107|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC038258|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	AY226182|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3
mm9_v1_chr17_+_27993426_27993458	0.159039	CCCUGAG	AK089790|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	AK144200|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	AK220293|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1	NM_001080769|Uhrf1bp1|224648|UHRF1 (ICBP90) binding protein 1
mm9_v1_chr10_+_117066551_117066569	0.158313	CCCUGAG	NM_027468|Cpm|70574|carboxypeptidase M	BC055073|Cpm|70574|carboxypeptidase M	BC088735|Cpm|70574|carboxypeptidase M	BC100404|Cpm|70574|carboxypeptidase M	BC047389|Cpm|70574|carboxypeptidase M
mm9_v1_chr2_-_180773777_180773949	0.157914	CCCUGAG	AY574263|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AF225912|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK083157|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK136886|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	BC053013|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	NM_015730|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK143938|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK034228|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4
mm9_v1_chr1_+_193541845_193542002	0.157119	CCCUGAG	AK133814|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	NM_172266|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chrX_+_71528035_71528145	0.155608	CCCUGAG	NM_001173547|Taz|66826|tafazzin	NM_181516|Taz|66826|tafazzin	AK172563|Taz|66826|tafazzin	AK019872|Taz|66826|tafazzin	AK076481|Taz|66826|tafazzin	AK160327|Taz|66826|tafazzin	AK170662|Taz|66826|tafazzin	AK004035|Taz|66826|tafazzin	AK075615|Taz|66826|tafazzin	BC015305|Taz|66826|tafazzin
mm9_v1_chr6_-_39675456_39675512	0.15404	CCCUGAG	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr4_+_135762279_135762338	0.154012	CCCUGAG	NM_001008232|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	AK132294|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	BC085250|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
mm9_v1_chr8_-_97362140_97362260	0.15367	CCCUGAG	AK088757|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	BC021864|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK146282|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK168252|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK076116|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK079615|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK163705|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK136821|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	NM_134141|Ciapin1|109006|cytokine induced apoptosis inhibitor 1
mm9_v1_chr3_+_89866717_89866721	0.152856	CCCUGAG	AK007060|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene	NM_028567|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene	BC048560|1700094D03Rik|73545|RIKEN cDNA 1700094D03 gene
mm9_v1_chr19_+_42164922_42164992	0.150963	CCCUGAG	NM_145501|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	AK030725|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC110363|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC089309|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha
mm9_v1_chr10_+_106708886_106708980	0.150384	CCCUGAG	NM_001033223|Lin7a|108030|lin-7 homolog A (C. elegans)	NM_001039354|Lin7a|108030|lin-7 homolog A (C. elegans)	BC105965|Lin7a|108030|lin-7 homolog A (C. elegans)	AK160671|Lin7a|108030|lin-7 homolog A (C. elegans)	BC029721|Lin7a|108030|lin-7 homolog A (C. elegans)
mm9_v1_chr4_+_47104780_47104844	0.14408	CCCUGAG	AK082014|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	AK042133|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	AK043977|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	AK156751|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	BC056425|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	BC024475|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	AK033638|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	NM_172693|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	AB175680|Galnt12|230145|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
mm9_v1_chr16_+_37011839_37011930	0.141478	CCCUGAG	AY074936|Polq|77782|polymerase (DNA directed), theta	AY147862|Polq|77782|polymerase (DNA directed), theta	AY147863|Polq|77782|polymerase (DNA directed), theta	AY147864|Polq|77782|polymerase (DNA directed), theta	NM_001159369|Polq|77782|polymerase (DNA directed), theta	NM_029977|Polq|77782|polymerase (DNA directed), theta	AK020790|Polq|77782|polymerase (DNA directed), theta	BC138360|Polq|77782|polymerase (DNA directed), theta	BC157900|Polq|77782|polymerase (DNA directed), theta
mm9_v1_chr11_+_98657082_98657130	0.13749	CCCUGAG	BC058629|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	NM_028722|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC043039|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	AK053719|Msl1|74026|male-specific lethal 1 homolog (Drosophila)	BC055715|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr14_+_26513611_26513728	0.135212	CCCUGAG	AK028349|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	BC004041|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)	NM_134084|Ppif|105675|peptidylprolyl isomerase F (cyclophilin F)
mm9_v1_chr1_-_65003291_65003407	0.133828	CCCUGAG	AK034959|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	BC063098|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3	NM_001039493|Plekhm3|241075|pleckstrin homology domain containing, family M, member 3
mm9_v1_chr11_-_60727237_60727316	0.133762	CCCUGAG	BC034332|Gm16515|24083|predicted gene, Gm16515	BC038816|Gm16515|24083|predicted gene, Gm16515	AK004720|Gm16515|24083|predicted gene, Gm16515	AK089179|Gm16515|24083|predicted gene, Gm16515	AK080453|Gm16515|24083|predicted gene, Gm16515	NM_025294|Gm16515|24083|predicted gene, Gm16515
mm9_v1_chr4_-_138313413_138313517	0.129346	CCCUGAG	BC125567|Pla2g2f|26971|phospholipase A2, group IIF	AK029254|Pla2g2f|26971|phospholipase A2, group IIF	AF166099|Pla2g2f|26971|phospholipase A2, group IIF	NM_012045|Pla2g2f|26971|phospholipase A2, group IIF
mm9_v1_chr6_-_92484838_92484854	0.12751	CCCUGAG	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr11_+_101140325_101140516	0.123861	CCCUGAG	AK006754|Cntd1|68107|cyclin N-terminal domain containing 1	AK049116|Cntd1|68107|cyclin N-terminal domain containing 1	BC006866|Cntd1|68107|cyclin N-terminal domain containing 1	AK007245|Cntd1|68107|cyclin N-terminal domain containing 1	NM_026562|Cntd1|68107|cyclin N-terminal domain containing 1
mm9_v1_chr11_-_115569814_115569935	0.122134	CCCUGAG	AK155800|Grb2|14784|growth factor receptor bound protein 2	AK166142|Grb2|14784|growth factor receptor bound protein 2	AK148148|Grb2|14784|growth factor receptor bound protein 2	AK172002|Grb2|14784|growth factor receptor bound protein 2	BC052377|Grb2|14784|growth factor receptor bound protein 2	NM_008163|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr10_+_13686174_13686209	0.120845	CCCUGAG	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr9_-_58388489_58388746	0.117256	CCCUGAG	AK031354|Cd276|102657|CD276 antigen	AY190318|Cd276|102657|CD276 antigen	BC019436|Cd276|102657|CD276 antigen	BC056608|Cd276|102657|CD276 antigen	NM_133983|Cd276|102657|CD276 antigen
mm9_v1_chr9_-_65917524_65917537	0.113912	CCCUGAG	BC138950|Snx22|382083|sorting nexin 22	BC138951|Snx22|382083|sorting nexin 22	AK032028|Snx22|382083|sorting nexin 22	NM_001025612|Snx22|382083|sorting nexin 22
mm9_v1_chr17_-_30024821_30024837	0.112567	CCCUGAG	NM_001081160|Mdga1|74762|MAM domain containing glycosylphosphatidylinositol anchor 1
mm9_v1_chr19_+_46431369_46431437	0.111635	CCCUGAG	NM_029186|Tmem180|75146|transmembrane protein 180	AK151797|Tmem180|75146|transmembrane protein 180	AK161305|Tmem180|75146|transmembrane protein 180	BC058746|Tmem180|75146|transmembrane protein 180	AK031554|Tmem180|75146|transmembrane protein 180	BC031169|Tmem180|75146|transmembrane protein 180
mm9_v1_chr14_-_70132309_70132386	0.109904	CCCUGAG	BC024115|Chmp7|105513|CHMP family, member 7	BC033365|Chmp7|105513|CHMP family, member 7	NM_134078|Chmp7|105513|CHMP family, member 7
mm9_v1_chr14_+_14845004_14845173	0.109657	CCCUGAG	AK046679|Atxn7|246103|ataxin 7	NM_139227|Atxn7|246103|ataxin 7	BC137846|Atxn7|246103|ataxin 7
mm9_v1_chr7_-_127039189_127039258	0.109596	CCCUGAG	BC030335|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	AK155160|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	NM_001163703|Dcun1d3|233805|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm9_v1_chr19_-_5085471_5085483	0.109168	CCCUGAG	BC072634|Tmem151a|381199|transmembrane protein 151A	NM_001001885|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr6_-_92431385_92431385	0.106569	CCCUGAG	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chrX_-_101866402_101866402	0.104628	CCCUGAG	AK132304|Zdhhc15|108672|zinc finger, DHHC domain containing 15	NM_175358|Zdhhc15|108672|zinc finger, DHHC domain containing 15
mm9_v1_chr4_+_80556574_80556717	0.0998026	CCCUGAG	NM_026821|D4Bwg0951e|52829|DNA segment, Chr 4, Brigham & Women's Genetics 0951 expressed	BC030404|D4Bwg0951e|52829|DNA segment, Chr 4, Brigham & Women's Genetics 0951 expressed	BC021501|D4Bwg0951e|52829|DNA segment, Chr 4, Brigham & Women's Genetics 0951 expressed
mm9_v1_chr16_-_10543121_10543218	0.0996307	CCCUGAG	BC017551|Dexi|58239|dexamethasone-induced transcript	AK007644|Dexi|58239|dexamethasone-induced transcript	AK032104|Dexi|58239|dexamethasone-induced transcript	NM_021428|Dexi|58239|dexamethasone-induced transcript
mm9_v1_chr1_-_162964371_162964389	0.0969203	CCCUGAG	BC113763|Zbtb37|240869|zinc finger and BTB domain containing 37	AK084871|Zbtb37|240869|zinc finger and BTB domain containing 37	NM_173424|Zbtb37|240869|zinc finger and BTB domain containing 37
mm9_v1_chr18_+_36953553_36953593	0.0963604	CCCUGAG	BC024881|Zmat2|66492|zinc finger, matrin type 2	NM_025594|Zmat2|66492|zinc finger, matrin type 2	AK012091|Zmat2|66492|zinc finger, matrin type 2	BC089501|Zmat2|66492|zinc finger, matrin type 2	AK008717|Zmat2|66492|zinc finger, matrin type 2
mm9_v1_chr15_-_78548542_78548542	0.0956667	CCCUGAG	BC094219|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2	NM_183141|Elfn2|207393|leucine rich repeat and fibronectin type III, extracellular 2
mm9_v1_chr7_+_134890288_134890288	0.0954797	CCCUGAG	BC059812|Fbxl19|233902|F-box and leucine-rich repeat protein 19	NM_172748|Fbxl19|233902|F-box and leucine-rich repeat protein 19
mm9_v1_chr11_+_75007475_75007498	0.0943311	CCCUGAG	AK140456|Rtn4rl1|237847|reticulon 4 receptor-like 1	NM_177708|Rtn4rl1|237847|reticulon 4 receptor-like 1	AK033286|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr5_-_148537561_148537595	0.0940772	CCCUGAG	X78568|Flt1|14254|FMS-like tyrosine kinase 1	D88689|Flt1|14254|FMS-like tyrosine kinase 1	D88690|Flt1|14254|FMS-like tyrosine kinase 1	NM_010228|Flt1|14254|FMS-like tyrosine kinase 1	AK005502|Flt1|14254|FMS-like tyrosine kinase 1	AK013236|Flt1|14254|FMS-like tyrosine kinase 1	AK167596|Flt1|14254|FMS-like tyrosine kinase 1	AK146906|Flt1|14254|FMS-like tyrosine kinase 1
mm9_v1_chr18_-_14841294_14841422	0.0936895	CCCUGAG	AK083887|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161369|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161370|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_001161371|Ss18|268996|synovial sarcoma translocation, Chromosome 18	NM_009280|Ss18|268996|synovial sarcoma translocation, Chromosome 18	X93357|Ss18|268996|synovial sarcoma translocation, Chromosome 18
mm9_v1_chr11_+_66725482_66725594	0.0928948	CCCUGAG	AK051285|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK041182|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK051645|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	NM_178656|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK084056|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK051158|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	BC147296|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	BC147297|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels
mm9_v1_chr14_-_58508974_58509153	0.0924034	CCCUGAG	AK020965|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AY668951|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170139|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK031184|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK139216|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK140182|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK049270|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK163174|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK017158|Zdhhc20|75965|zinc finger, DHHC domain containing 20	NM_029492|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK151840|Zdhhc20|75965|zinc finger, DHHC domain containing 20	AK170017|Zdhhc20|75965|zinc finger, DHHC domain containing 20	BC019536|Zdhhc20|75965|zinc finger, DHHC domain containing 20
mm9_v1_chr7_+_19511230_19511244	0.0916339	CCCUGAG	NM_001029877|Nova2|384569|neuro-oncological ventral antigen 2
mm9_v1_chr7_+_137836057_137836069	0.0893128	CCCUGAG	AB041546|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_021314|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr16_+_58670320_58670440	0.0883458	CCCUGAG	NM_007757|Cpox|12892|coproporphyrinogen oxidase	D16333|Cpox|12892|coproporphyrinogen oxidase	AK157277|Cpox|12892|coproporphyrinogen oxidase
mm9_v1_chr4_+_129277911_129277964	0.0880197	CCCUGAG	AK045767|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK016715|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK005111|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK171961|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK050648|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	BC024696|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	BC025081|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	NM_029748|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene
mm9_v1_chr18_-_60872888_60873042	0.0865646	CCCUGAG	AF049894|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AF074926|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC066098|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC079561|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	NM_008306|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr4_-_149112082_149112163	0.0853824	CCCUGAG	AK079157|Tmem201|230917|transmembrane protein 201	AK078532|Tmem201|230917|transmembrane protein 201	AK039221|Tmem201|230917|transmembrane protein 201	BC072645|Tmem201|230917|transmembrane protein 201	NM_001025106|Tmem201|230917|transmembrane protein 201	NM_177672|Tmem201|230917|transmembrane protein 201	AK086543|Tmem201|230917|transmembrane protein 201	AK153631|Tmem201|230917|transmembrane protein 201
mm9_v1_chr16_+_33380860_33381006	0.084968	CCCUGAG	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr11_-_103611082_103611134	0.0847652	CCCUGAG	AF469004|Wnt9b|22412|wingless-type MMTV integration site 9B	AB073819|Wnt9b|22412|wingless-type MMTV integration site 9B	BC110482|Wnt9b|22412|wingless-type MMTV integration site 9B	AK052708|Wnt9b|22412|wingless-type MMTV integration site 9B	NM_011719|Wnt9b|22412|wingless-type MMTV integration site 9B
mm9_v1_chr3_+_142193286_142193339	0.0825605	CCCUGAG	NM_001083312|Gbp6|229900|guanylate binding protein 6	AK036666|Gbp6|229900|guanylate binding protein 6	AK087751|Gbp6|229900|guanylate binding protein 6	NM_145545|Gbp6|229900|guanylate binding protein 6	BC010229|Gbp6|229900|guanylate binding protein 6
mm9_v1_chr4_-_86873866_86873867	0.0793999	CCCUGAG	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr18_-_34811357_34811396	0.0762331	CCCUGAG	BC059013|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK031459|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK038523|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK047789|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK048246|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK079681|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK044478|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK052567|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK075948|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK081461|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	NM_178347|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)
mm9_v1_chr4_+_116549978_116550006	0.0754246	CCCUGAG	AK016928|Zswim5|74464|zinc finger, SWIM domain containing 5	AK122519|Zswim5|74464|zinc finger, SWIM domain containing 5	NM_001029912|Zswim5|74464|zinc finger, SWIM domain containing 5
mm9_v1_chr3_-_97692613_97692634	0.0737137	CCCUGAG	BC028274|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC141185|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC145504|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001039376|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr3_+_88140181_88140184	0.0710928	CCCUGAG	AK143911|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_178246|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr11_+_74433092_74433113	0.0710235	CCCUGAG	AK143211|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene	NM_001013784|E130309D14Rik|432582|RIKEN cDNA E130309D14 gene
mm9_v1_chr17_-_36408313_36408377	0.06667	CCCUGAG	AK220298|Trim39|79263|tripartite motif-containing 39	AK145861|Trim39|79263|tripartite motif-containing 39	AK053507|Trim39|79263|tripartite motif-containing 39	NM_178281|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr11_+_75444489_75444601	0.0648235	CCCUGAG	U96724|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK054436|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK078104|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	BC066112|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	NM_008916|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK052817|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK164290|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AK085743|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	BC014725|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AF483522|Inpp5k|19062|inositol polyphosphate 5-phosphatase K	AF483523|Inpp5k|19062|inositol polyphosphate 5-phosphatase K
mm9_v1_chr19_-_5118229_5118407	0.062649	CCCUGAG	AF055666|Klc2|16594|kinesin light chain 2	BC014845|Klc2|16594|kinesin light chain 2	AK141439|Klc2|16594|kinesin light chain 2	NM_008451|Klc2|16594|kinesin light chain 2
mm9_v1_chr1_+_161974503_161974570	0.0607903	CCCUGAG	NM_001162896|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK132698|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK035814|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene	AK015875|4930523C07Rik|67647|RIKEN cDNA 4930523C07 gene
mm9_v1_chr2_-_33286793_33286890	0.059165	CCCUGAG	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr2_-_152758906_152758943	0.0573318	CCCUGAG	AK152669|Foxs1|14239|forkhead box S1	BC096604|Foxs1|14239|forkhead box S1	BC131937|Foxs1|14239|forkhead box S1	BC131939|Foxs1|14239|forkhead box S1	AK077935|Foxs1|14239|forkhead box S1	NM_010226|Foxs1|14239|forkhead box S1
mm9_v1_chr9_+_20456531_20456579	0.0571292	CCCUGAG	AK002665|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AB009691|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK003931|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK160228|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK003369|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK054045|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK150652|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	NM_023371|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	AK139395|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	BC038254|Pin1|23988|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm9_v1_chr8_-_93837120_93837168	0.0567973	CCCUGAG	AK029911|Rpgrip1l|244585|Rpgrip1-like	NM_173431|Rpgrip1l|244585|Rpgrip1-like	AJ344253|Rpgrip1l|244585|Rpgrip1-like
mm9_v1_chr19_-_7416286_7416363	0.0566761	CCCUGAG	BC058556|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	AK172444|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080388|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_001080389|Mark2|13728|MAP/microtubule affinity-regulating kinase 2	NM_007928|Mark2|13728|MAP/microtubule affinity-regulating kinase 2
mm9_v1_chr6_+_56664888_56664904	0.0550952	CCCUGAG	AK147365|Avl9|78937|AVL9 homolog (S. cerevisiase)	NM_030235|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr8_-_112217144_112217225	0.049795	CCCUGAG	AK161899|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK088192|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK050468|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK152830|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	BC017605|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	AK010262|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene	NM_028018|2400003C14Rik|71955|RIKEN cDNA 2400003C14 gene
mm9_v1_chr15_-_50721552_50721725	0.0481896	CCCUGAG	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr4_+_115410677_115410677	0.0478825	CCCUGAG	BC059213|4732418C07Rik|230648|RIKEN cDNA 4732418C07 gene	NM_172698|4732418C07Rik|230648|RIKEN cDNA 4732418C07 gene
mm9_v1_chr12_-_21379292_21379460	0.0468781	CCCUGAG	AJ007365|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC114999|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69613|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138416|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138420|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC145270|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC026052|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149288|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK139471|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC048792|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK137693|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK165739|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC094655|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK144161|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK142441|Adam17|11491|a disintegrin and metallopeptidase domain 17	NM_009615|Adam17|11491|a disintegrin and metallopeptidase domain 17	AB021709|Adam17|11491|a disintegrin and metallopeptidase domain 17
mm9_v1_chr17_+_28314346_28314398	0.0457775	CCCUGAG	AK028222|Zfp523|224656|zinc finger protein 523	NM_172617|Zfp523|224656|zinc finger protein 523	BC025615|Zfp523|224656|zinc finger protein 523
mm9_v1_chr10_+_126415772_126415772	0.0457397	CCCUGAG	BC085142|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	NM_001113470|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm9_v1_chr11_+_115676023_115676086	0.0387538	CCCUGAG	BC117762|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	BC126953|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	NM_029557|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	AK002758|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	AK089005|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)
mm9_v1_chr6_-_116666759_116666930	0.0380487	CCCUGAG	BC116440|Tmem72|319776|transmembrane protein 72	BC116441|Tmem72|319776|transmembrane protein 72	AK085603|Tmem72|319776|transmembrane protein 72	NM_178768|Tmem72|319776|transmembrane protein 72	AK049938|Tmem72|319776|transmembrane protein 72	AK033856|Tmem72|319776|transmembrane protein 72	BC093486|Tmem72|319776|transmembrane protein 72	AK049048|Tmem72|319776|transmembrane protein 72	AK141578|Tmem72|319776|transmembrane protein 72
mm9_v1_chr17_-_56857074_56857131	0.0355396	CCCUGAG	BC039944|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	BC058424|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein	NM_001166474|Vmac|106639|vimentin-type intermediate filament associated coiled-coil protein
mm9_v1_chr7_+_4642529_4642529	0.0344621	CCCUGAG	BC086636|Brsk1|381979|BR serine/threonine kinase 1	NM_001003920|Brsk1|381979|BR serine/threonine kinase 1	NM_001168572|Brsk1|381979|BR serine/threonine kinase 1
mm9_v1_chr1_+_34516590_34516643	0.032782	CCCUGAG	NM_011206|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	U52523|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	AK144353|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	U35124|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr5_-_46248719_46248778	0.031687	CCCUGAG	BC066151|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK041987|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043498|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK154398|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK155421|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK083689|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043845|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	BC138563|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_001163073|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_178142|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr4_+_155265932_155266005	0.0304176	CCCUGAG	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr11_+_72861327_72861399	0.0297887	CCCUGAG	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr5_-_121038602_121038704	0.0294092	CCCUGAG	AK037856|Tpcn1|252972|two pore channel 1	AK077411|Tpcn1|252972|two pore channel 1	BC058951|Tpcn1|252972|two pore channel 1	NM_145853|Tpcn1|252972|two pore channel 1	AF217002|Tpcn1|252972|two pore channel 1	AK148129|Tpcn1|252972|two pore channel 1
mm9_v1_chr8_-_73046985_73047078	0.026251	CCCUGAG	AK155003|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK013135|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK002695|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC048938|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC053944|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	NM_029366|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene
mm9_v1_chr15_+_83610434_83610456	0.0256942	CCCUGAG	AK048421|Mpped1|223726|metallophosphoesterase domain containing 1	NM_172610|Mpped1|223726|metallophosphoesterase domain containing 1
mm9_v1_chr3_-_108003697_108003757	0.0249524	CCCUGAG	AK087683|Cyb561d1|72023|cytochrome b-561 domain containing 1	BC060107|Cyb561d1|72023|cytochrome b-561 domain containing 1	BC137590|Cyb561d1|72023|cytochrome b-561 domain containing 1	NM_001081320|Cyb561d1|72023|cytochrome b-561 domain containing 1	NM_028061|Cyb561d1|72023|cytochrome b-561 domain containing 1	AK164441|Cyb561d1|72023|cytochrome b-561 domain containing 1
mm9_v1_chr15_+_85662733_85662783	0.0243765	CCCUGAG	NM_001033337|Ttc38|239570|tetratricopeptide repeat domain 38	BC132621|Ttc38|239570|tetratricopeptide repeat domain 38	BC132623|Ttc38|239570|tetratricopeptide repeat domain 38	BC030849|Ttc38|239570|tetratricopeptide repeat domain 38	AK078848|Ttc38|239570|tetratricopeptide repeat domain 38	AK133636|Ttc38|239570|tetratricopeptide repeat domain 38	BC024550|Ttc38|239570|tetratricopeptide repeat domain 38
mm9_v1_chr7_+_16894925_16895103	0.0224074	CCCUGAG	NM_133234|Bbc3|170770|BCL2 binding component 3	BC044782|Bbc3|170770|BCL2 binding component 3	AF332560|Bbc3|170770|BCL2 binding component 3	BC060370|Bbc3|170770|BCL2 binding component 3	BC147261|Bbc3|170770|BCL2 binding component 3	BC147262|Bbc3|170770|BCL2 binding component 3
mm9_v1_chr17_+_74154180_74154211	0.0223286	CCCUGAG	AK141265|Ehd3|57440|EH-domain containing 3	NM_020578|Ehd3|57440|EH-domain containing 3	AK128964|Ehd3|57440|EH-domain containing 3	AF155883|Ehd3|57440|EH-domain containing 3
mm9_v1_chr2_+_34287544_34287544	0.0223159	CCCUGAG	BC090644|Mapkap1|227743|mitogen-activated protein kinase associated protein 1	NM_177345|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr6_+_49269351_49269403	0.0172185	CCCUGAG	AK018135|Ccdc126|57895|coiled-coil domain containing 126	NM_175098|Ccdc126|57895|coiled-coil domain containing 126	BC117837|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr3_-_58496285_58496330	0.0161078	CCCUGAG	AK139626|Siah2|20439|seven in absentia 2	BC058400|Siah2|20439|seven in absentia 2	NM_009174|Siah2|20439|seven in absentia 2	AK149316|Siah2|20439|seven in absentia 2
mm9_v1_chr11_+_42233258_42233286	0.0157483	CCCUGAG	AK090279|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	NM_008070|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145973|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145975|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr19_-_6996189_6996331	0.0128795	CCCUGAG	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr11_-_116555897_116555976	0.0120486	CCCUGAG	BC010208|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	X93999|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	AK004613|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	NM_009180|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	AK136381|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
mm9_v1_chr12_+_3572838_3573040	0.0114617	CCCUGAG	AJ010223|Dtnb|13528|dystrobrevin, beta	BC030924|Dtnb|13528|dystrobrevin, beta	NM_007886|Dtnb|13528|dystrobrevin, beta
mm9_v1_chr7_+_106530044_106530083	0.0114341	CCCUGAG	BC082585|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5	NM_201352|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr3_+_88336316_88336316	0.00952077	CCCUGAG	NM_001029890|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr11_+_106078232_106078424	0.00735743	CCCUGAG	AK049311|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	NM_028074|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK169816|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK021013|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK171730|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	AK134182|Ddx42|72047|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
mm9_v1_chr19_+_44637331_44637363	0.00583009	CCCUGAG	AK154774|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	BC130013|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	NM_176958|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK084960|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK043636|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK141867|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor
mm9_v1_chr12_-_11157178_11157178	0.00435018	CCCUGAG	AK046054|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	NM_173417|Kcns3|238076|potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3
mm9_v1_chr6_+_115084919_115085009	0.00346581	CCCUGAG	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr1_-_57028171_57028177	0.00304528	CCCUGAG	AF319623|Satb2|212712|special AT-rich sequence binding protein 2	NM_139146|Satb2|212712|special AT-rich sequence binding protein 2
