mm9_v1_chr7_-_111001598_111001720	8.55657	CDX1,2,4.p2	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr9_-_96378951_96379045	2.59864	CDX1,2,4.p2	AK007588|Rnf7|19823|ring finger protein 7	BC011127|Rnf7|19823|ring finger protein 7	AK002628|Rnf7|19823|ring finger protein 7	AK003248|Rnf7|19823|ring finger protein 7	AK003963|Rnf7|19823|ring finger protein 7	AK011328|Rnf7|19823|ring finger protein 7	AK146030|Rnf7|19823|ring finger protein 7	NM_011279|Rnf7|19823|ring finger protein 7	AF092877|Rnf7|19823|ring finger protein 7
mm9_v1_chr2_+_163899842_163899948	2.58057	CDX1,2,4.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr7_+_74792295_74792398	2.28044	CDX1,2,4.p2	AK086049|Ttc23|67009|tetratricopeptide repeat domain 23	AK165626|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168475|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168476|Ttc23|67009|tetratricopeptide repeat domain 23	NM_001168477|Ttc23|67009|tetratricopeptide repeat domain 23	NM_025905|Ttc23|67009|tetratricopeptide repeat domain 23	AK141754|Ttc23|67009|tetratricopeptide repeat domain 23	BC038179|Ttc23|67009|tetratricopeptide repeat domain 23	AK005431|Ttc23|67009|tetratricopeptide repeat domain 23	AK084269|Ttc23|67009|tetratricopeptide repeat domain 23	AK166555|Ttc23|67009|tetratricopeptide repeat domain 23	AK166613|Ttc23|67009|tetratricopeptide repeat domain 23
mm9_v1_chrM_+_3844_3864	2.15794	CDX1,2,4.p2	
mm9_v1_chr9_-_101154160_101154163	2.14357	CDX1,2,4.p2	NM_001161362|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chrY_+_234230_234474	2.00393	CDX1,2,4.p2	AK047790|Kdm5d|20592|lysine (K)-specific demethylase 5D	NM_011419|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK141096|Kdm5d|20592|lysine (K)-specific demethylase 5D	AK140971|Kdm5d|20592|lysine (K)-specific demethylase 5D	BC060077|Kdm5d|20592|lysine (K)-specific demethylase 5D	AF127244|Kdm5d|20592|lysine (K)-specific demethylase 5D	AB221607|Kdm5d|20592|lysine (K)-specific demethylase 5D	Z29652|Kdm5d|20592|lysine (K)-specific demethylase 5D
mm9_v1_chr1_+_168184269_168184413	1.9255	CDX1,2,4.p2	NM_001164528|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024494|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024495|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024496|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024497|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024498|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024499|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024500|Ildr2|100039795|immunoglobulin-like domain containing receptor 2	FJ024501|Ildr2|100039795|immunoglobulin-like domain containing receptor 2
mm9_v1_chr9_+_96159123_96159160	1.81699	CDX1,2,4.p2	NM_001184709|Tfdp2|211586|transcription factor Dp 2	AK033356|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr3_+_145784635_145784876	1.78865	CDX1,2,4.p2	AK030819|Mcoln3|171166|mucolipin 3	AK035029|Mcoln3|171166|mucolipin 3	AK033008|Mcoln3|171166|mucolipin 3	AF475086|Mcoln3|171166|mucolipin 3	BC106856|Mcoln3|171166|mucolipin 3	BC106857|Mcoln3|171166|mucolipin 3	NM_134160|Mcoln3|171166|mucolipin 3	AY083531|Mcoln3|171166|mucolipin 3	AK191060|Mcoln3|171166|mucolipin 3	AK202150|Mcoln3|171166|mucolipin 3
mm9_v1_chr2_+_13500063_13500099	1.78245	CDX1,2,4.p2	AK198215|Vim|22352|vimentin	AK208074|Vim|22352|vimentin	AK209588|Vim|22352|vimentin	AK209779|Vim|22352|vimentin	AK210390|Vim|22352|vimentin	AK210884|Vim|22352|vimentin	AK212337|Vim|22352|vimentin	AK212338|Vim|22352|vimentin	AK212907|Vim|22352|vimentin	AK213561|Vim|22352|vimentin	AK216501|Vim|22352|vimentin	AK217097|Vim|22352|vimentin	AK218080|Vim|22352|vimentin	AK218318|Vim|22352|vimentin	AK205873|Vim|22352|vimentin
mm9_v1_chr10_+_126503214_126503242	1.59563	CDX1,2,4.p2	AK012202|Cdk4|12567|cyclin-dependent kinase 4
mm9_v1_chr16_+_43619057_43619100	1.58682	CDX1,2,4.p2	AK178854|Zbtb20|56490|zinc finger and BTB domain containing 20	AK013698|Zbtb20|56490|zinc finger and BTB domain containing 20	AK036125|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chrX_+_34335642_34335646	1.49833	CDX1,2,4.p2	U27316|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK003467|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	NM_007451|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr11_-_53083217_53083336	1.40113	CDX1,2,4.p2	AK180907|Hspa4|15525|heat shock protein 4	AK148883|Hspa4|15525|heat shock protein 4
mm9_v1_chr6_+_115494665_115494729	1.3936	CDX1,2,4.p2	BC061473|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)	NM_199033|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)	AK044190|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)	AK134697|Tsen2|381802|tRNA splicing endonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr5_-_143665474_143665607	1.38762	CDX1,2,4.p2	
mm9_v1_chr17_+_36131397_36131470	1.38379	CDX1,2,4.p2	AK078380|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK020860|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	AK142942|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene	BC055918|A930015D03Rik|77810|RIKEN cDNA A930015D03 gene
mm9_v1_chr1_-_42749940_42749978	1.36614	CDX1,2,4.p2	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr3_+_94926272_94926508	1.36055	CDX1,2,4.p2	
mm9_v1_chr16_+_72663393_72663448	1.35326	CDX1,2,4.p2	AK138485|Robo1|19876|roundabout homolog 1 (Drosophila)	AK143001|Robo1|19876|roundabout homolog 1 (Drosophila)	NM_019413|Robo1|19876|roundabout homolog 1 (Drosophila)	AK032752|Robo1|19876|roundabout homolog 1 (Drosophila)	AK142047|Robo1|19876|roundabout homolog 1 (Drosophila)
mm9_v1_chr19_-_60302398_60302548	1.34309	CDX1,2,4.p2	BC061459|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK162079|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed
mm9_v1_chr1_+_88024759_88024856	1.30086	CDX1,2,4.p2	BC002203|Psmd1|70247|proteasome (prosome, macropain) 26S subunit, non-ATPase, 1
mm9_v1_chr16_+_37916538_37916581	1.29221	CDX1,2,4.p2	AK141990|Gpr156|239845|G protein-coupled receptor 156	BC059227|Gpr156|239845|G protein-coupled receptor 156	NM_153394|Gpr156|239845|G protein-coupled receptor 156
mm9_v1_chr7_+_135047561_135047646	1.28296	CDX1,2,4.p2	NM_009739|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK150607|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK150723|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK167519|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK145479|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	BC046595|Bckdk|12041|branched chain ketoacid dehydrogenase kinase
mm9_v1_chr14_+_115491436_115491496	1.22036	CDX1,2,4.p2	AK134807|Gpc5|103978|glypican 5	NM_175500|Gpc5|103978|glypican 5	AK038547|Gpc5|103978|glypican 5	AK084223|Gpc5|103978|glypican 5
mm9_v1_chr18_+_80403500_80403576	1.2202	CDX1,2,4.p2	AK010599|Txnl4a|27366|thioredoxin-like 4A	NM_001038608|Txnl4a|27366|thioredoxin-like 4A	NM_025299|Txnl4a|27366|thioredoxin-like 4A	AK148287|Txnl4a|27366|thioredoxin-like 4A	AK166497|Txnl4a|27366|thioredoxin-like 4A	BC029327|Txnl4a|27366|thioredoxin-like 4A	AK007331|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr11_+_75570317_75570388	1.18403	CDX1,2,4.p2	AK188896|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK201131|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr3_-_115832327_115832378	1.17614	CDX1,2,4.p2	U12884|Vcam1|22329|vascular cell adhesion molecule 1	M84487|Vcam1|22329|vascular cell adhesion molecule 1	L08431|Vcam1|22329|vascular cell adhesion molecule 1	BC011159|Vcam1|22329|vascular cell adhesion molecule 1	AK016465|Vcam1|22329|vascular cell adhesion molecule 1	AK030195|Vcam1|22329|vascular cell adhesion molecule 1	AK143401|Vcam1|22329|vascular cell adhesion molecule 1	AK162954|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr11_-_98300224_98300319	1.15878	CDX1,2,4.p2	AK002959|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK009922|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK007795|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	AK041314|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	BC021589|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene	NM_025559|1810046J19Rik|103742|RIKEN cDNA 1810046J19 gene
mm9_v1_chr1_-_55044032_55044295	1.1313	CDX1,2,4.p2	AK077993|Sf3b1|81898|splicing factor 3b, subunit 1	AK087700|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr3_+_66789621_66789657	1.11527	CDX1,2,4.p2	AK168539|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC038303|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK004742|Rsrc1|66880|arginine/serine-rich coiled-coil 1	AK169340|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC027501|Rsrc1|66880|arginine/serine-rich coiled-coil 1	BC083123|Rsrc1|66880|arginine/serine-rich coiled-coil 1
mm9_v1_chr8_-_113426341_113426387	1.09082	CDX1,2,4.p2	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr4_+_155177707_155177763	1.07628	CDX1,2,4.p2	AK011341|Mrpl20|66448|mitochondrial ribosomal protein L20	NM_025570|Mrpl20|66448|mitochondrial ribosomal protein L20	AK004053|Mrpl20|66448|mitochondrial ribosomal protein L20	AB049645|Mrpl20|66448|mitochondrial ribosomal protein L20	AK168665|Mrpl20|66448|mitochondrial ribosomal protein L20	BC039985|Mrpl20|66448|mitochondrial ribosomal protein L20	AK015199|Mrpl20|66448|mitochondrial ribosomal protein L20
mm9_v1_chr11_-_78510874_78510941	1.06005	CDX1,2,4.p2	BC058652|Nlk|18099|nemo like kinase	NM_008702|Nlk|18099|nemo like kinase
mm9_v1_chr3_-_107734481_107734662	1.04829	CDX1,2,4.p2	AK162441|Gstm7|68312|glutathione S-transferase, mu 7	AK002213|Gstm7|68312|glutathione S-transferase, mu 7	BC051924|Gstm7|68312|glutathione S-transferase, mu 7	NM_026672|Gstm7|68312|glutathione S-transferase, mu 7
mm9_v1_chr9_+_78039786_78039851	1.04278	CDX1,2,4.p2	AK008400|Gsta4|14860|glutathione S-transferase, alpha 4	AK008189|Gsta4|14860|glutathione S-transferase, alpha 4	AK011841|Gsta4|14860|glutathione S-transferase, alpha 4	AK019271|Gsta4|14860|glutathione S-transferase, alpha 4	AK009668|Gsta4|14860|glutathione S-transferase, alpha 4	AK010098|Gsta4|14860|glutathione S-transferase, alpha 4	AK008193|Gsta4|14860|glutathione S-transferase, alpha 4	AK008490|Gsta4|14860|glutathione S-transferase, alpha 4	AK011177|Gsta4|14860|glutathione S-transferase, alpha 4	BC012639|Gsta4|14860|glutathione S-transferase, alpha 4	L06047|Gsta4|14860|glutathione S-transferase, alpha 4
mm9_v1_chr6_-_56654667_56654692	1.03914	CDX1,2,4.p2	BC048459|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK008480|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK011218|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC061085|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK009617|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132626|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC132628|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_025520|Lsm5|66373|LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr1_-_134638287_134638341	1.03355	CDX1,2,4.p2	AK138636|Nfasc|269116|neurofascin	AJ543322|Nfasc|269116|neurofascin
mm9_v1_chr14_-_111154292_111154370	1.02735	CDX1,2,4.p2	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chrX_+_34142137_34142199	1.02256	CDX1,2,4.p2	
mm9_v1_chr4_+_125806078_125806220	1.00259	CDX1,2,4.p2	AK050808|Stk40|74178|serine/threonine kinase 40
mm9_v1_chr19_-_12576485_12576634	0.998887	CDX1,2,4.p2	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr5_-_110698882_110698900	0.98616	CDX1,2,4.p2	AK012159|Pgam5|72542|phosphoglycerate mutase family member 5	AK034588|Pgam5|72542|phosphoglycerate mutase family member 5	BC138924|Pgam5|72542|phosphoglycerate mutase family member 5	BC138925|Pgam5|72542|phosphoglycerate mutase family member 5	BC145467|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr11_+_75570397_75570437	0.983699	CDX1,2,4.p2	AK011612|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr5_-_52957343_52957374	0.981785	CDX1,2,4.p2	AY841361|Lgi2|246316|leucine-rich repeat LGI family, member 2
mm9_v1_chr10_-_17742931_17743059	0.978209	CDX1,2,4.p2	BC039801|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK171138|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	BC098509|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	AK013984|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene	NM_028440|3110003A17Rik|73112|RIKEN cDNA 3110003A17 gene
mm9_v1_chr5_+_122298977_122299040	0.95872	CDX1,2,4.p2	AK039192|Fam109a|231717|family with sequence similarity 109, member A	AK033618|Fam109a|231717|family with sequence similarity 109, member A	NM_175474|Fam109a|231717|family with sequence similarity 109, member A
mm9_v1_chr3_+_5218545_5218658	0.957539	CDX1,2,4.p2	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr11_-_86517662_86517713	0.947168	CDX1,2,4.p2	AK167527|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr6_-_122560022_122560104	0.940952	CDX1,2,4.p2	S52658|Gdf3|14562|growth differentiation factor 3	AK160533|Gdf3|14562|growth differentiation factor 3	AK152457|Gdf3|14562|growth differentiation factor 3	NM_008108|Gdf3|14562|growth differentiation factor 3	L06443|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr14_+_48092244_48092299	0.925766	CDX1,2,4.p2	BC049155|Fbxo34|78938|F-box protein 34	AK013711|Fbxo34|78938|F-box protein 34
mm9_v1_chr6_+_5340417_5340708	0.922135	CDX1,2,4.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr7_-_29123724_29123770	0.912277	CDX1,2,4.p2	AK146583|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK145465|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	BC007132|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	NM_013676|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	U88539|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	BC057449|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK146055|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK146453|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK159786|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK145117|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr5_+_145016060_145016213	0.909375	CDX1,2,4.p2	AK049027|Bri3|55950|brain protein I3	NM_018772|Bri3|55950|brain protein I3	AK080467|Bri3|55950|brain protein I3	BC005677|Bri3|55950|brain protein I3	BC095955|Bri3|55950|brain protein I3	BC021149|Bri3|55950|brain protein I3	AF106967|Bri3|55950|brain protein I3
mm9_v1_chr3_-_98618351_98618365	0.887762	CDX1,2,4.p2	BC053501|Hsd3b6|15497|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6	AY046512|Hsd3b6|15497|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6	AK142267|Hsd3b6|15497|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6	NM_013821|Hsd3b6|15497|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6
mm9_v1_chr10_-_75931540_75931574	0.885949	CDX1,2,4.p2	AK004411|Ybey|216119|ybeY metallopeptidase
mm9_v1_chr11_+_75578120_75578179	0.883477	CDX1,2,4.p2	AK218111|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK180909|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr19_-_4906607_4906628	0.87765	CDX1,2,4.p2	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr5_+_93602126_93602279	0.868458	CDX1,2,4.p2	AK018083|Sept11|52398|septin 11	AK075989|Sept11|52398|septin 11
mm9_v1_chr5_+_108890247_108890362	0.863329	CDX1,2,4.p2	AK033609|Pcgf3|69587|polycomb group ring finger 3	AK085574|Pcgf3|69587|polycomb group ring finger 3	AK089091|Pcgf3|69587|polycomb group ring finger 3	NM_172716|Pcgf3|69587|polycomb group ring finger 3
mm9_v1_chr1_-_65225583_65225732	0.861153	CDX1,2,4.p2	AK087063|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK151212|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK149019|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK159173|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK160896|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK167583|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK167158|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	AK168832|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	BC088986|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble	NM_010497|Idh1|15926|isocitrate dehydrogenase 1 (NADP+), soluble
mm9_v1_chr16_-_96349292_96349333	0.860595	CDX1,2,4.p2	NM_008251|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr6_-_39760868_39760934	0.852131	CDX1,2,4.p2	BC028645|Mrps33|14548|mitochondrial ribosomal protein S33	BC087881|Mrps33|14548|mitochondrial ribosomal protein S33	AK019000|Mrps33|14548|mitochondrial ribosomal protein S33	AK144131|Mrps33|14548|mitochondrial ribosomal protein S33	Y17852|Mrps33|14548|mitochondrial ribosomal protein S33	NM_001010930|Mrps33|14548|mitochondrial ribosomal protein S33	NM_010270|Mrps33|14548|mitochondrial ribosomal protein S33
mm9_v1_chr6_-_122560002_122560015	0.851249	CDX1,2,4.p2	BC103565|Gdf3|14562|growth differentiation factor 3	BC101963|Gdf3|14562|growth differentiation factor 3	BC101964|Gdf3|14562|growth differentiation factor 3	BC101965|Gdf3|14562|growth differentiation factor 3	AK082877|Gdf3|14562|growth differentiation factor 3	AK146174|Gdf3|14562|growth differentiation factor 3	AK167962|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr11_-_69182891_69182931	0.842568	CDX1,2,4.p2	AK045449|Chd3|216848|chromodomain helicase DNA binding protein 3	NM_146019|Chd3|216848|chromodomain helicase DNA binding protein 3
mm9_v1_chr3_+_95330700_95330810	0.83624	CDX1,2,4.p2	AK028366|Ctss|13040|cathepsin S	NM_021281|Ctss|13040|cathepsin S	AJ002386|Ctss|13040|cathepsin S	AK152191|Ctss|13040|cathepsin S	AF038546|Ctss|13040|cathepsin S	AK150274|Ctss|13040|cathepsin S	BC011104|Ctss|13040|cathepsin S	BC002125|Ctss|13040|cathepsin S
mm9_v1_chr10_+_42481347_42481484	0.80937	CDX1,2,4.p2	AK090248|Sec63|140740|SEC63-like (S. cerevisiae)	BC080810|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr10_-_42722514_42722517	0.806584	CDX1,2,4.p2	AK019306|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr10_-_36855292_36855411	0.801732	CDX1,2,4.p2	AK082623|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK136452|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr10_-_80522871_80522963	0.796956	CDX1,2,4.p2	AK039966|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	BC003836|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	NM_024499|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK051005|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK079168|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK165557|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr18_-_16966954_16967033	0.794071	CDX1,2,4.p2	AK087418|Cdh2|12558|cadherin 2	BC022107|Cdh2|12558|cadherin 2	AK032826|Cdh2|12558|cadherin 2
mm9_v1_chr9_+_110558996_110559065	0.790554	CDX1,2,4.p2	AK012610|Ccdc12|72654|coiled-coil domain containing 12	NM_028312|Ccdc12|72654|coiled-coil domain containing 12	BC026668|Ccdc12|72654|coiled-coil domain containing 12
mm9_v1_chr2_-_30823346_30823454	0.781791	CDX1,2,4.p2	AK082936|Tor1a|30931|torsin family 1, member A (torsin A)	AK079728|Tor1a|30931|torsin family 1, member A (torsin A)	AJ298841|Tor1a|30931|torsin family 1, member A (torsin A)	AK038891|Tor1a|30931|torsin family 1, member A (torsin A)	AK160361|Tor1a|30931|torsin family 1, member A (torsin A)	BC017683|Tor1a|30931|torsin family 1, member A (torsin A)	NM_144884|Tor1a|30931|torsin family 1, member A (torsin A)
mm9_v1_chr17_-_23908488_23908570	0.780318	CDX1,2,4.p2	AK168389|Flywch1|224613|FLYWCH-type zinc finger 1	NM_153791|Flywch1|224613|FLYWCH-type zinc finger 1
mm9_v1_chr5_-_90692344_90692414	0.767274	CDX1,2,4.p2	AK153560|Ankrd17|81702|ankyrin repeat domain 17
mm9_v1_chr2_-_174092557_174092559	0.767114	CDX1,2,4.p2	
mm9_v1_chr1_-_128634766_128634787	0.758373	CDX1,2,4.p2	AK083792|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr2_+_106533281_106533425	0.756813	CDX1,2,4.p2	AK165186|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr5_+_136108487_136108731	0.755332	CDX1,2,4.p2	AK140006|Rhbdd2|215160|rhomboid domain containing 2	AK141182|Rhbdd2|215160|rhomboid domain containing 2	NM_146002|Rhbdd2|215160|rhomboid domain containing 2	AK165926|Rhbdd2|215160|rhomboid domain containing 2	AK041845|Rhbdd2|215160|rhomboid domain containing 2	AK030434|Rhbdd2|215160|rhomboid domain containing 2	AK043674|Rhbdd2|215160|rhomboid domain containing 2	BC018360|Rhbdd2|215160|rhomboid domain containing 2	BC028957|Rhbdd2|215160|rhomboid domain containing 2	AK189822|Rhbdd2|215160|rhomboid domain containing 2	AK212798|Rhbdd2|215160|rhomboid domain containing 2
mm9_v1_chr6_-_127075853_127076093	0.74839	CDX1,2,4.p2	AK193960|Ccnd2|12444|cyclin D2	AK011429|Ccnd2|12444|cyclin D2	AK009602|Ccnd2|12444|cyclin D2
mm9_v1_chr1_-_88253690_88253764	0.745665	CDX1,2,4.p2	AK050958|Ncl|17975|nucleolin
mm9_v1_chr2_-_37502738_37502804	0.741497	CDX1,2,4.p2	X84692|Strbp|20744|spermatid perinuclear RNA binding protein	NM_009261|Strbp|20744|spermatid perinuclear RNA binding protein
mm9_v1_chr17_-_32557916_32557924	0.741346	CDX1,2,4.p2	AF149837|Pglyrp2|57757|peptidoglycan recognition protein 2	AF149838|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315578|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315584|Pglyrp2|57757|peptidoglycan recognition protein 2	AF317548|Pglyrp2|57757|peptidoglycan recognition protein 2	AK050019|Pglyrp2|57757|peptidoglycan recognition protein 2	NM_021319|Pglyrp2|57757|peptidoglycan recognition protein 2
mm9_v1_chr15_+_101858606_101858684	0.736079	CDX1,2,4.p2	NM_010664|Krt18|16668|keratin 18	M11686|Krt18|16668|keratin 18	AK167469|Krt18|16668|keratin 18	AK145413|Krt18|16668|keratin 18	AK167072|Krt18|16668|keratin 18	AK167676|Krt18|16668|keratin 18	AK167432|Krt18|16668|keratin 18	AK167265|Krt18|16668|keratin 18	M36376|Krt18|16668|keratin 18	BC020474|Krt18|16668|keratin 18	BC089022|Krt18|16668|keratin 18
mm9_v1_chrX_+_99314793_99314850	0.726924	CDX1,2,4.p2	BC119355|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	BC119357|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	NM_027181|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	AK010338|Pin4|69713|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
mm9_v1_chr4_-_87452140_87452217	0.725874	CDX1,2,4.p2	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr14_-_48037815_48037862	0.724599	CDX1,2,4.p2	BC058087|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	BC027273|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK129032|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK147955|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK048470|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK085882|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5
mm9_v1_chr19_+_8963366_8963411	0.723781	CDX1,2,4.p2	AK012061|1810009A15Rik|66276|RIKEN cDNA 1810009A15 gene	AK007390|1810009A15Rik|66276|RIKEN cDNA 1810009A15 gene	NM_025463|1810009A15Rik|66276|RIKEN cDNA 1810009A15 gene	BC047099|1810009A15Rik|66276|RIKEN cDNA 1810009A15 gene	BC058702|1810009A15Rik|66276|RIKEN cDNA 1810009A15 gene
mm9_v1_chr15_-_81222718_81222746	0.716262	CDX1,2,4.p2	AK205921|St13|70356|suppression of tumorigenicity 13
mm9_v1_chr16_-_44558929_44559002	0.712755	CDX1,2,4.p2	BC078631|Boc|117606|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	BC062892|Boc|117606|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	AK028889|Boc|117606|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	NM_172506|Boc|117606|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	AK043379|Boc|117606|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	AK028770|Boc|117606|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
mm9_v1_chr10_-_127613623_127613661	0.702892	CDX1,2,4.p2	NM_019711|Rbms2|56516|RNA binding motif, single stranded interacting protein 2
mm9_v1_chr19_-_30623890_30624012	0.702251	CDX1,2,4.p2	AF030433|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	BC050189|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	NM_010051|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK141693|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK144119|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)
mm9_v1_chr14_-_20796199_20796254	0.701187	CDX1,2,4.p2	AK075698|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK160396|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2	AK012405|Gng2|14702|guanine nucleotide binding protein (G protein), gamma 2
mm9_v1_chr6_+_136467315_136467378	0.700268	CDX1,2,4.p2	AK082697|Atf7ip|54343|activating transcription factor 7 interacting protein	AK167542|Atf7ip|54343|activating transcription factor 7 interacting protein	BC048827|Atf7ip|54343|activating transcription factor 7 interacting protein	AK134252|Atf7ip|54343|activating transcription factor 7 interacting protein	BC052460|Atf7ip|54343|activating transcription factor 7 interacting protein	NM_019426|Atf7ip|54343|activating transcription factor 7 interacting protein	AJ132702|Atf7ip|54343|activating transcription factor 7 interacting protein	BC022714|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr13_-_58228079_58228222	0.699443	CDX1,2,4.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr7_+_30023324_30023364	0.697594	CDX1,2,4.p2	NM_001110201|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	NM_029887|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	BC109331|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)	AK135529|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr6_-_97010364_97010406	0.694148	CDX1,2,4.p2	BC089490|Fam19a4|320701|family with sequence similarity 19, member A4	AK081531|Fam19a4|320701|family with sequence similarity 19, member A4	AK084114|Fam19a4|320701|family with sequence similarity 19, member A4	NM_177233|Fam19a4|320701|family with sequence similarity 19, member A4	AK149355|Fam19a4|320701|family with sequence similarity 19, member A4
mm9_v1_chr7_+_130267661_130267769	0.69408	CDX1,2,4.p2	AK147327|Tnrc6a|233833|trinucleotide repeat containing 6a	AK008599|Tnrc6a|233833|trinucleotide repeat containing 6a	BC026849|Tnrc6a|233833|trinucleotide repeat containing 6a	AK083848|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr1_+_136327630_136327750	0.68348	CDX1,2,4.p2	
mm9_v1_chr14_-_100548982_100549014	0.682642	CDX1,2,4.p2	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr19_-_25036047_25036105	0.682607	CDX1,2,4.p2	BC018472|Cbwd1|226043|COBW domain containing 1	AK076027|Cbwd1|226043|COBW domain containing 1	BC053745|Cbwd1|226043|COBW domain containing 1	AK132291|Cbwd1|226043|COBW domain containing 1	NM_146097|Cbwd1|226043|COBW domain containing 1
mm9_v1_chr7_-_99889932_99889979	0.681991	CDX1,2,4.p2	AK014157|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK051992|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK018467|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK019505|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK084903|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK084084|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene	AK145781|4632427E13Rik|666737|RIKEN cDNA 4632427E13 gene
mm9_v1_chrM_+_12383_12506	0.678581	CDX1,2,4.p2	
mm9_v1_chr2_+_174171943_174171964	0.678087	CDX1,2,4.p2	
mm9_v1_chr15_-_82074765_82074852	0.674877	CDX1,2,4.p2	NM_001080158|Cenpm|66570|centromere protein M
mm9_v1_chr1_+_72353980_72354076	0.664195	CDX1,2,4.p2	AK081633|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	NM_009533|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK089944|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK165470|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK084263|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	BC051660|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5
mm9_v1_chr4_-_139388882_139388882	0.663962	CDX1,2,4.p2	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr17_+_37006518_37006546	0.660565	CDX1,2,4.p2	NM_011280|Trim10|19824|tripartite motif-containing 10	AK011082|Trim10|19824|tripartite motif-containing 10	AF134811|Trim10|19824|tripartite motif-containing 10	BC051632|Trim10|19824|tripartite motif-containing 10	AF220121|Trim10|19824|tripartite motif-containing 10
mm9_v1_chr15_+_82176533_82176625	0.6604	CDX1,2,4.p2	
mm9_v1_chr17_+_34781733_34781827	0.652042	CDX1,2,4.p2	AK146018|Fkbpl|56299|FK506 binding protein-like	BC046338|Fkbpl|56299|FK506 binding protein-like	NM_019873|Fkbpl|56299|FK506 binding protein-like
mm9_v1_chr5_-_138596915_138596971	0.650382	CDX1,2,4.p2	BC052453|Zfp113|56314|zinc finger protein 113	BC054525|Zfp113|56314|zinc finger protein 113	BC056991|Zfp113|56314|zinc finger protein 113	AF167320|Zfp113|56314|zinc finger protein 113	AK076349|Zfp113|56314|zinc finger protein 113	AK220556|Zfp113|56314|zinc finger protein 113	NM_019747|Zfp113|56314|zinc finger protein 113
mm9_v1_chr1_-_134439500_134439516	0.649184	CDX1,2,4.p2	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr11_-_5607667_5607715	0.646747	CDX1,2,4.p2	BC029262|Mrps24|64660|mitochondrial ribosomal protein S24	AK010590|Mrps24|64660|mitochondrial ribosomal protein S24	AK003117|Mrps24|64660|mitochondrial ribosomal protein S24	AK007338|Mrps24|64660|mitochondrial ribosomal protein S24	AK014099|Mrps24|64660|mitochondrial ribosomal protein S24	AK012461|Mrps24|64660|mitochondrial ribosomal protein S24	NM_026080|Mrps24|64660|mitochondrial ribosomal protein S24
mm9_v1_chr16_+_33725541_33725620	0.643777	CDX1,2,4.p2	BC076596|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr16_+_90220986_90221006	0.643	CDX1,2,4.p2	BC048874|Sod1|20655|superoxide dismutase 1, soluble	NM_011434|Sod1|20655|superoxide dismutase 1, soluble	AK080908|Sod1|20655|superoxide dismutase 1, soluble	AK080929|Sod1|20655|superoxide dismutase 1, soluble	AK086878|Sod1|20655|superoxide dismutase 1, soluble	BC086886|Sod1|20655|superoxide dismutase 1, soluble
mm9_v1_chr6_+_146991282_146991325	0.641893	CDX1,2,4.p2	AK077677|Mrps35|232536|mitochondrial ribosomal protein S35	NM_145573|Mrps35|232536|mitochondrial ribosomal protein S35	AK170480|Mrps35|232536|mitochondrial ribosomal protein S35	BC019964|Mrps35|232536|mitochondrial ribosomal protein S35
mm9_v1_chr11_+_53164267_53164268	0.640493	CDX1,2,4.p2	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr2_+_91386476_91386497	0.632723	CDX1,2,4.p2	BC017140|Ckap5|75786|cytoskeleton associated protein 5	BC089032|Ckap5|75786|cytoskeleton associated protein 5	NM_001165989|Ckap5|75786|cytoskeleton associated protein 5	NM_029437|Ckap5|75786|cytoskeleton associated protein 5	BC138334|Ckap5|75786|cytoskeleton associated protein 5	BC096422|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr18_+_78016286_78016338	0.631644	CDX1,2,4.p2	AK157529|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK192613|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK196974|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK209959|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr14_+_27852148_27852279	0.630064	CDX1,2,4.p2	AF494210|Il17rd|171463|interleukin 17 receptor D	NM_134437|Il17rd|171463|interleukin 17 receptor D	BC138629|Il17rd|171463|interleukin 17 receptor D	BC066804|Il17rd|171463|interleukin 17 receptor D	AF459444|Il17rd|171463|interleukin 17 receptor D
mm9_v1_chr2_+_162759398_162759483	0.627378	CDX1,2,4.p2	AK185344|Srsf6|67996|serine/arginine-rich splicing factor 6	AK208133|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr6_-_6528581_6528672	0.620814	CDX1,2,4.p2	U41626|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK135462|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK167914|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC023490|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC058117|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK161690|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	X83589|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK160432|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	NM_009169|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK141911|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1
mm9_v1_chr1_+_174078145_174078245	0.620061	CDX1,2,4.p2	NM_153555|Dcaf8|98193|DDB1 and CUL4 associated factor 8	BC023704|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK146825|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK164799|Dcaf8|98193|DDB1 and CUL4 associated factor 8	AK047316|Dcaf8|98193|DDB1 and CUL4 associated factor 8
mm9_v1_chr3_+_66023884_66023904	0.619627	CDX1,2,4.p2	X83601|Ptx3|19288|pentraxin related gene
mm9_v1_chr8_+_3567980_3567997	0.616583	CDX1,2,4.p2	AK168456|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	AK011562|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	AK049309|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	NM_001024728|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene
mm9_v1_chr11_+_114529837_114529938	0.616193	CDX1,2,4.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr18_+_78016353_78016381	0.60988	CDX1,2,4.p2	AK164193|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr2_+_90780665_90780699	0.608652	CDX1,2,4.p2	BC021393|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr2_-_33323966_33324113	0.602988	CDX1,2,4.p2	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chr17_-_46290450_46290465	0.601212	CDX1,2,4.p2	AK004224|Mad2l1bp|66591|MAD2L1 binding protein	AK007974|Mad2l1bp|66591|MAD2L1 binding protein	BC005768|Mad2l1bp|66591|MAD2L1 binding protein	AK220322|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr7_-_110962416_110962439	0.599876	CDX1,2,4.p2	BC027434|Hbb-b2|15130|hemoglobin, beta adult minor chain	BC032264|Hbb-b2|15130|hemoglobin, beta adult minor chain	NM_016956|Hbb-b2|15130|hemoglobin, beta adult minor chain	AK168412|Hbb-b1|15129|hemoglobin, beta adult major chain	AK002394|Hbb-b1|15129|hemoglobin, beta adult major chain	AK005496|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011033|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011050|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011052|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011057|Hbb-b1|15129|hemoglobin, beta adult major chain	AK012551|Hbb-b1|15129|hemoglobin, beta adult major chain	AK167615|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168477|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168584|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168819|Hbb-b1|15129|hemoglobin, beta adult major chain	AK028067|Hbb-b1|15129|hemoglobin, beta adult major chain	NM_008220|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr2_+_163843294_163843512	0.59295	CDX1,2,4.p2	AK206846|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK207996|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK212148|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK214843|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK215126|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK219468|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr17_-_45707358_45707448	0.592755	CDX1,2,4.p2	AK177162|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chrY_-_623013_623055	0.592056	CDX1,2,4.p2	AK154382|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	AJ007376|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	BC051046|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	NM_012008|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr14_-_48037874_48037887	0.591629	CDX1,2,4.p2	AK164575|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK036384|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5	AK135820|Dlgap5|218977|discs, large (Drosophila) homolog-associated protein 5
mm9_v1_chr5_-_5514787_5514975	0.586632	CDX1,2,4.p2	NM_001193660|Cldn12|64945|claudin 12	AK166110|Cldn12|64945|claudin 12	AK049331|Cldn12|64945|claudin 12	AK132155|Cldn12|64945|claudin 12	NM_001193659|Cldn12|64945|claudin 12	NM_001193661|Cldn12|64945|claudin 12	AK128999|Cldn12|64945|claudin 12	BC024057|Cldn12|64945|claudin 12	NM_022890|Cldn12|64945|claudin 12
mm9_v1_chr11_-_69229653_69229709	0.584614	CDX1,2,4.p2	BC075632|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr2_-_109118405_109118446	0.584485	CDX1,2,4.p2	BC115926|Mett5d1|76894|methyltransferase 5 domain containing 1	BC117549|Mett5d1|76894|methyltransferase 5 domain containing 1	BC106186|Mett5d1|76894|methyltransferase 5 domain containing 1	BC089533|Mett5d1|76894|methyltransferase 5 domain containing 1	AK002682|Mett5d1|76894|methyltransferase 5 domain containing 1	NM_029790|Mett5d1|76894|methyltransferase 5 domain containing 1
mm9_v1_chr4_-_11181335_11181349	0.583454	CDX1,2,4.p2	BC049092|Ints8|72656|integrator complex subunit 8	BC057618|Ints8|72656|integrator complex subunit 8
mm9_v1_chr2_+_163843744_163843775	0.579734	CDX1,2,4.p2	
mm9_v1_chr18_+_60963495_60963509	0.578928	CDX1,2,4.p2	AK002232|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	AK020607|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	NM_001042605|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	NM_010545|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	BC003476|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	BC096435|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	X07129|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
mm9_v1_chr13_-_119175893_119176078	0.578897	CDX1,2,4.p2	AK013360|Mrps30|59054|mitochondrial ribosomal protein S30	BC029784|Mrps30|59054|mitochondrial ribosomal protein S30	AK011476|Mrps30|59054|mitochondrial ribosomal protein S30	AK151642|Mrps30|59054|mitochondrial ribosomal protein S30	NM_021556|Mrps30|59054|mitochondrial ribosomal protein S30
mm9_v1_chr14_+_27473359_27473404	0.57617	CDX1,2,4.p2	AK206427|Arf4|11843|ADP-ribosylation factor 4	AK210624|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr4_+_106721017_106721031	0.571059	CDX1,2,4.p2	AK144320|Ssbp3|72475|single-stranded DNA binding protein 3
mm9_v1_chr6_+_137703029_137703138	0.568176	CDX1,2,4.p2	AK145820|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK168204|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK012558|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK008033|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK030961|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK075963|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK150273|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK169418|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK152462|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK034347|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	BC016218|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK083298|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	NM_172733|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)	AK150712|Dera|232449|2-deoxyribose-5-phosphate aldolase homolog (C. elegans)
mm9_v1_chr17_-_37095372_37095414	0.567339	CDX1,2,4.p2	AK003714|Znrd1|66136|zinc ribbon domain containing, 1	NM_023162|Znrd1|66136|zinc ribbon domain containing, 1	BC043016|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chr5_+_93601062_93601210	0.567013	CDX1,2,4.p2	
mm9_v1_chr11_-_34647110_34647142	0.566639	CDX1,2,4.p2	AK011138|Ccdc99|70385|coiled-coil domain containing 99	BC006674|Ccdc99|70385|coiled-coil domain containing 99	AK012927|Ccdc99|70385|coiled-coil domain containing 99	NM_027411|Ccdc99|70385|coiled-coil domain containing 99
mm9_v1_chr9_-_96379093_96379128	0.564985	CDX1,2,4.p2	AK006703|Rnf7|19823|ring finger protein 7
mm9_v1_chr9_+_3532302_3532353	0.563684	CDX1,2,4.p2	NM_001033322|Gucy1a2|234889|guanylate cyclase 1, soluble, alpha 2
mm9_v1_chr6_+_64992810_64992853	0.563588	CDX1,2,4.p2	AK134442|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK011724|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK122454|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr6_+_64992861_64992872	0.556572	CDX1,2,4.p2	AK147884|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr4_-_19497166_19497254	0.554349	CDX1,2,4.p2	BC036983|Cpne3|70568|copine III	AK220348|Cpne3|70568|copine III	AK146324|Cpne3|70568|copine III	AK017357|Cpne3|70568|copine III	AK036664|Cpne3|70568|copine III	NM_027769|Cpne3|70568|copine III	AK017651|Cpne3|70568|copine III
mm9_v1_chr6_+_38331516_38331524	0.552476	CDX1,2,4.p2	AK035185|Ttc26|264134|tetratricopeptide repeat domain 26	BC066060|Ttc26|264134|tetratricopeptide repeat domain 26	NM_153600|Ttc26|264134|tetratricopeptide repeat domain 26	BC031513|Ttc26|264134|tetratricopeptide repeat domain 26	BC066087|Ttc26|264134|tetratricopeptide repeat domain 26
mm9_v1_chr10_+_42481292_42481301	0.546218	CDX1,2,4.p2	BC059816|Sec63|140740|SEC63-like (S. cerevisiae)	NM_153055|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr15_-_75751888_75752008	0.544853	CDX1,2,4.p2	BC026536|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK013214|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK002912|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK012519|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK019237|Pycrl|66194|pyrroline-5-carboxylate reductase-like	AK004291|Pycrl|66194|pyrroline-5-carboxylate reductase-like	NM_025412|Pycrl|66194|pyrroline-5-carboxylate reductase-like
mm9_v1_chr5_-_21290971_21291070	0.543489	CDX1,2,4.p2	AK013295|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	D63784|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	NM_009584|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC021755|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK167991|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK131964|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161376|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK162409|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK136951|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	BC052027|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK169850|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr7_-_31016726_31016816	0.542662	CDX1,2,4.p2	BC010684|Tbcb|66411|tubulin folding cofactor B	AK002316|Tbcb|66411|tubulin folding cofactor B	AK003655|Tbcb|66411|tubulin folding cofactor B	AK010438|Tbcb|66411|tubulin folding cofactor B
mm9_v1_chr1_-_58561631_58561830	0.541565	CDX1,2,4.p2	BC015257|Orc2|18393|origin recognition complex, subunit 2	NM_008765|Orc2|18393|origin recognition complex, subunit 2	U27457|Orc2|18393|origin recognition complex, subunit 2	AK048408|Orc2|18393|origin recognition complex, subunit 2	AK133604|Orc2|18393|origin recognition complex, subunit 2	AK146281|Orc2|18393|origin recognition complex, subunit 2	AK146859|Orc2|18393|origin recognition complex, subunit 2	AK051747|Orc2|18393|origin recognition complex, subunit 2
mm9_v1_chr8_-_88077181_88077304	0.533135	CDX1,2,4.p2	AK212721|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr5_+_87233239_87233314	0.530054	CDX1,2,4.p2	AK135309|Ythdc1|231386|YTH domain containing 1
mm9_v1_chr10_+_127759711_127759783	0.52899	CDX1,2,4.p2	AK213625|Cnpy2|56530|canopy 2 homolog (zebrafish)	BC008261|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK007914|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK013568|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK180663|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr13_+_51942043_51942063	0.527732	CDX1,2,4.p2	NM_011817|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK002237|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK007410|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AB021884|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	BC001989|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AF055638|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma
mm9_v1_chr11_+_29426408_29426413	0.521637	CDX1,2,4.p2	
mm9_v1_chr10_-_43260744_43260803	0.518736	CDX1,2,4.p2	AK008795|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	AK163304|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	BC013506|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	AK006199|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	NM_026411|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	AK007370|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene
mm9_v1_chr2_+_162760216_162760271	0.518278	CDX1,2,4.p2	BC029312|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr18_-_78006491_78006518	0.513406	CDX1,2,4.p2	AK076912|Haus1|225745|HAUS augmin-like complex, subunit 1	AK146923|Haus1|225745|HAUS augmin-like complex, subunit 1	BC024400|Haus1|225745|HAUS augmin-like complex, subunit 1	NM_146089|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr10_+_24589791_24589858	0.508727	CDX1,2,4.p2	NM_001166416|Med23|70208|mediator complex subunit 23	NM_027347|Med23|70208|mediator complex subunit 23	AK028545|Med23|70208|mediator complex subunit 23	AK042346|Med23|70208|mediator complex subunit 23	AF507918|Med23|70208|mediator complex subunit 23	BC050916|Med23|70208|mediator complex subunit 23	BC040398|Med23|70208|mediator complex subunit 23	AK129312|Med23|70208|mediator complex subunit 23
mm9_v1_chr19_+_39361574_39361600	0.506977	CDX1,2,4.p2	NM_007815|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	BC019908|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	D17674|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29
mm9_v1_chr2_+_160471695_160471802	0.501585	CDX1,2,4.p2	AK164061|Top1|21969|topoisomerase (DNA) I	AK083930|Top1|21969|topoisomerase (DNA) I	AK166844|Top1|21969|topoisomerase (DNA) I	BC048743|Top1|21969|topoisomerase (DNA) I	BC002095|Top1|21969|topoisomerase (DNA) I	AK160590|Top1|21969|topoisomerase (DNA) I	BC092349|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr3_+_40439675_40439741	0.499881	CDX1,2,4.p2	NM_175515|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	AK035092|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC125523|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)	BC132387|Intu|380614|inturned planar cell polarity effector homolog (Drosophila)
mm9_v1_chr6_-_128388502_128388671	0.498518	CDX1,2,4.p2	AK212190|Fkbp4|14228|FK506 binding protein 4	X17069|Fkbp4|14228|FK506 binding protein 4	X70887|Fkbp4|14228|FK506 binding protein 4	AK160202|Fkbp4|14228|FK506 binding protein 4	AK083912|Fkbp4|14228|FK506 binding protein 4	NM_010219|Fkbp4|14228|FK506 binding protein 4	AK089972|Fkbp4|14228|FK506 binding protein 4	BC003447|Fkbp4|14228|FK506 binding protein 4
mm9_v1_chr2_-_150835067_150835133	0.497439	CDX1,2,4.p2	AK129253|Ninl|78177|ninein-like	BC067071|Ninl|78177|ninein-like	NM_207204|Ninl|78177|ninein-like
mm9_v1_chr15_+_82176434_82176522	0.496693	CDX1,2,4.p2	AK151325|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK152795|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	BC028457|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	NM_026914|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK005345|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK170899|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	BC092006|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene
mm9_v1_chr4_+_130219299_130219334	0.495569	CDX1,2,4.p2	BC050747|Pum1|80912|pumilio 1 (Drosophila)	AK147185|Pum1|80912|pumilio 1 (Drosophila)	AF321909|Pum1|80912|pumilio 1 (Drosophila)	BC048174|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr2_+_174153230_174153414	0.493603	CDX1,2,4.p2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr3_+_82859489_82859512	0.492054	CDX1,2,4.p2	BC006750|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	BC052895|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chrX_-_91368713_91368747	0.491177	CDX1,2,4.p2	L19714|Zfx|22764|zinc finger protein X-linked	AK145115|Zfx|22764|zinc finger protein X-linked	NM_001044386|Zfx|22764|zinc finger protein X-linked	NM_011768|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr2_+_160471623_160471632	0.490265	CDX1,2,4.p2	AK145538|Top1|21969|topoisomerase (DNA) I	NM_009408|Top1|21969|topoisomerase (DNA) I
mm9_v1_chr6_-_136765642_136765708	0.48981	CDX1,2,4.p2	BC104145|Wbp11|60321|WW domain binding protein 11
mm9_v1_chr16_-_23127779_23127814	0.485567	CDX1,2,4.p2	AK146954|Rfc4|106344|replication factor C (activator 1) 4	AK147030|Rfc4|106344|replication factor C (activator 1) 4	BC003335|Rfc4|106344|replication factor C (activator 1) 4	NM_145480|Rfc4|106344|replication factor C (activator 1) 4
mm9_v1_chr10_+_68996455_68996596	0.48503	CDX1,2,4.p2	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr4_-_134108044_134108129	0.483843	CDX1,2,4.p2	NM_029100|Sepn1|74777|selenoprotein N, 1
mm9_v1_chr10_-_79373177_79373432	0.47982	CDX1,2,4.p2	AK206142|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK206739|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK212119|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK180841|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK179327|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK207391|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218659|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218931|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr7_+_73205419_73205451	0.479431	CDX1,2,4.p2	AK005256|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK151800|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK153502|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK152546|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK088438|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'
mm9_v1_chr11_+_44430784_44430845	0.47895	CDX1,2,4.p2	
mm9_v1_chr17_-_45707285_45707350	0.471719	CDX1,2,4.p2	U89426|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr18_-_77953224_77953235	0.465697	CDX1,2,4.p2	AK139552|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr5_-_100392845_100392900	0.464114	CDX1,2,4.p2	AK053251|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr12_-_13255934_13256032	0.463935	CDX1,2,4.p2	BC008570|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK166146|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK028341|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK053259|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK160982|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	BC010624|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	NM_134040|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK153335|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	AK132157|Ddx1|104721|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1
mm9_v1_chr3_+_10012576_10012609	0.462712	CDX1,2,4.p2	AK011551|Fabp5|16592|fatty acid binding protein 5, epidermal	AK166506|Fabp5|16592|fatty acid binding protein 5, epidermal	AK167389|Fabp5|16592|fatty acid binding protein 5, epidermal	AK008782|Fabp5|16592|fatty acid binding protein 5, epidermal	BC002008|Fabp5|16592|fatty acid binding protein 5, epidermal	BC053042|Fabp5|16592|fatty acid binding protein 5, epidermal	NM_010634|Fabp5|16592|fatty acid binding protein 5, epidermal	X70100|Fabp5|16592|fatty acid binding protein 5, epidermal	BC100543|Fabp5|16592|fatty acid binding protein 5, epidermal
mm9_v1_chr2_-_69044179_69044244	0.459593	CDX1,2,4.p2	AK011893|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC027121|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC033605|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK003408|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK011241|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK146727|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_025565|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK151554|Spc25|66442|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr4_+_94281210_94281261	0.455411	CDX1,2,4.p2	NM_026319|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	BC005798|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	AK014770|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	AK011690|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	AK053369|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	BC023760|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)	BC049156|Ift74|67694|intraflagellar transport 74 homolog (Chlamydomonas)
mm9_v1_chrX_-_54579777_54579845	0.453245	CDX1,2,4.p2	AK028642|Arhgef6|73341|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm9_v1_chr11_-_97627829_97627926	0.451044	CDX1,2,4.p2	BC021478|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	BC079553|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK030628|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK035158|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK004983|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	AK017849|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)	NM_026186|Cwc25|67480|CWC25 spliceosome-associated protein homolog (S. cerevisiae)
mm9_v1_chr8_+_81552119_81552167	0.450453	CDX1,2,4.p2	AK028267|Zfp827|622675|zinc finger protein 827	AK019287|Zfp827|622675|zinc finger protein 827
mm9_v1_chr9_-_21767872_21768019	0.448144	CDX1,2,4.p2	BC003953|Epor|13857|erythropoietin receptor	J04843|Epor|13857|erythropoietin receptor	AK139031|Epor|13857|erythropoietin receptor	BC046282|Epor|13857|erythropoietin receptor	NM_010149|Epor|13857|erythropoietin receptor
mm9_v1_chrX_+_104115963_104116162	0.447879	CDX1,2,4.p2	NM_175271|Lpar4|78134|lysophosphatidic acid receptor 4	BC052178|Lpar4|78134|lysophosphatidic acid receptor 4	AK051709|Lpar4|78134|lysophosphatidic acid receptor 4	AK019967|Lpar4|78134|lysophosphatidic acid receptor 4	AK045289|Lpar4|78134|lysophosphatidic acid receptor 4	BC069178|Lpar4|78134|lysophosphatidic acid receptor 4	BC138893|Lpar4|78134|lysophosphatidic acid receptor 4	BC138894|Lpar4|78134|lysophosphatidic acid receptor 4
mm9_v1_chr3_-_123088789_123088909	0.446293	CDX1,2,4.p2	AK083169|Mettl14|210529|methyltransferase like 14	AK089949|Mettl14|210529|methyltransferase like 14	AK129409|Mettl14|210529|methyltransferase like 14	BC052204|Mettl14|210529|methyltransferase like 14	AK136652|Mettl14|210529|methyltransferase like 14	AK146881|Mettl14|210529|methyltransferase like 14	AK153810|Mettl14|210529|methyltransferase like 14	NM_201638|Mettl14|210529|methyltransferase like 14
mm9_v1_chrX_-_45866446_45866665	0.444406	CDX1,2,4.p2	AK211196|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	AF100927|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	AK133764|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	BC003292|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	DQ016499|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1	NM_012019|Aifm1|26926|apoptosis-inducing factor, mitochondrion-associated 1
mm9_v1_chr6_+_51494591_51494699	0.442933	CDX1,2,4.p2	AK152004|Snx10|71982|sorting nexin 10
mm9_v1_chr9_-_82826139_82826181	0.440603	CDX1,2,4.p2	BC068022|Phip|83946|pleckstrin homology domain interacting protein
mm9_v1_chr3_+_88390817_88390831	0.440594	CDX1,2,4.p2	AK217251|Ssr2|66256|signal sequence receptor, beta
mm9_v1_chr9_+_120019521_120019545	0.438644	CDX1,2,4.p2	AK167737|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr18_+_23910833_23910892	0.437888	CDX1,2,4.p2	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr4_+_140257340_140257464	0.432335	CDX1,2,4.p2	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr3_-_57455592_57455609	0.431637	CDX1,2,4.p2	BC062098|Commd2|52245|COMM domain containing 2	BC100390|Commd2|52245|COMM domain containing 2	BC080774|Commd2|52245|COMM domain containing 2	BC119316|Commd2|52245|COMM domain containing 2	BC119318|Commd2|52245|COMM domain containing 2	AK143821|Commd2|52245|COMM domain containing 2	NM_175095|Commd2|52245|COMM domain containing 2
mm9_v1_chr7_+_73205454_73205492	0.431199	CDX1,2,4.p2	BC013777|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	BC029642|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AF230356|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'
mm9_v1_chr2_+_154262114_154262265	0.429455	CDX1,2,4.p2	AK148027|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_009823|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	NM_172860|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK040403|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	DQ213025|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	BC064679|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	AK049206|Cbfa2t2|12396|core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)
mm9_v1_chr2_-_118375365_118375421	0.429371	CDX1,2,4.p2	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr7_-_29678773_29678890	0.427933	CDX1,2,4.p2	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chr12_-_102267095_102267118	0.425526	CDX1,2,4.p2	AK137260|Ccdc88c|68339|coiled-coil domain containing 88C	AK002458|Ccdc88c|68339|coiled-coil domain containing 88C
mm9_v1_chr6_-_148937854_148937926	0.41668	CDX1,2,4.p2	AK143126|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr5_+_90889937_90889973	0.415558	CDX1,2,4.p2	BC024643|Alb|11657|albumin	BC049971|Alb|11657|albumin	AJ457860|Alb|11657|albumin
mm9_v1_chr14_-_71107810_71107841	0.415389	CDX1,2,4.p2	AY550930|Xpo7|65246|exportin 7	AK143729|Xpo7|65246|exportin 7
mm9_v1_chr2_+_79547936_79548278	0.413992	CDX1,2,4.p2	AK051670|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	NM_172420|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC120706|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	BC132149|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK051449|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK157871|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C	AK083940|Ppp1r1c|75276|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm9_v1_chrX_+_34335647_34335650	0.413746	CDX1,2,4.p2	AK012751|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK002283|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK017881|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK088730|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	X70847|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr4_-_142889372_142889476	0.412815	CDX1,2,4.p2	NM_010329|Pdpn|14726|podoplanin	AK158855|Pdpn|14726|podoplanin
mm9_v1_chr6_+_17586971_17587041	0.412549	CDX1,2,4.p2	U16741|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK150751|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2	AK031551|Capza2|12343|capping protein (actin filament) muscle Z-line, alpha 2
mm9_v1_chr8_-_27126047_27126068	0.409132	CDX1,2,4.p2	AK153252|Fnta|14272|farnesyltransferase, CAAX box, alpha	D49744|Fnta|14272|farnesyltransferase, CAAX box, alpha
mm9_v1_chr12_+_17273358_17273435	0.4027	CDX1,2,4.p2	AK167386|Pdia6|71853|protein disulfide isomerase associated 6	AK152960|Pdia6|71853|protein disulfide isomerase associated 6	AK005989|Pdia6|71853|protein disulfide isomerase associated 6	AK133792|Pdia6|71853|protein disulfide isomerase associated 6	AK166111|Pdia6|71853|protein disulfide isomerase associated 6	AK168136|Pdia6|71853|protein disulfide isomerase associated 6	AK168279|Pdia6|71853|protein disulfide isomerase associated 6	AK076558|Pdia6|71853|protein disulfide isomerase associated 6	NM_027959|Pdia6|71853|protein disulfide isomerase associated 6	BC006865|Pdia6|71853|protein disulfide isomerase associated 6	AK151008|Pdia6|71853|protein disulfide isomerase associated 6	AK165877|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr11_+_58680717_58680792	0.401772	CDX1,2,4.p2	AK030099|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	AK134479|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	BC058081|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	NM_172403|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene
mm9_v1_chr3_-_103541882_103541927	0.401284	CDX1,2,4.p2	AK002518|Olfml3|99543|olfactomedin-like 3	AK131879|Olfml3|99543|olfactomedin-like 3	AK076084|Olfml3|99543|olfactomedin-like 3	AK143728|Olfml3|99543|olfactomedin-like 3	NM_133859|Olfml3|99543|olfactomedin-like 3
mm9_v1_chr5_-_23349880_23349980	0.400867	CDX1,2,4.p2	AK008581|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	AK003864|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	BC055352|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)	NM_025394|Tomm7|66169|translocase of outer mitochondrial membrane 7 homolog (yeast)
mm9_v1_chr11_-_51419012_51419040	0.399675	CDX1,2,4.p2	AK207379|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr4_+_125773896_125773946	0.398105	CDX1,2,4.p2	NM_001163266|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	NM_138721|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10
mm9_v1_chr4_-_148511650_148511708	0.397293	CDX1,2,4.p2	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr16_+_87354429_87354497	0.395634	CDX1,2,4.p2	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chr9_+_120058842_120058868	0.394785	CDX1,2,4.p2	AK013799|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK019323|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK028057|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK083103|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK140055|Mobp|17433|myelin-associated oligodendrocytic basic protein	BC048492|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039364|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039365|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_008614|Mobp|17433|myelin-associated oligodendrocytic basic protein
mm9_v1_chr11_+_29426434_29426502	0.394434	CDX1,2,4.p2	AK136344|Mtif2|76784|mitochondrial translational initiation factor 2	AK160724|Mtif2|76784|mitochondrial translational initiation factor 2	AK019087|Mtif2|76784|mitochondrial translational initiation factor 2	AK010766|Mtif2|76784|mitochondrial translational initiation factor 2	AK146961|Mtif2|76784|mitochondrial translational initiation factor 2	NM_133767|Mtif2|76784|mitochondrial translational initiation factor 2	BC016590|Mtif2|76784|mitochondrial translational initiation factor 2	BC066819|Mtif2|76784|mitochondrial translational initiation factor 2
mm9_v1_chr9_-_96233411_96233654	0.393844	CDX1,2,4.p2	AK217555|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK213033|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK205378|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK217181|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK178890|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK181142|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK185963|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK212665|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK214140|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK216038|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218295|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218384|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr7_+_138703898_138703948	0.393335	CDX1,2,4.p2	AK088534|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK138004|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	NM_009774|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	U67327|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	BC086790|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK190618|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr12_+_16817741_16817769	0.390416	CDX1,2,4.p2	AK149061|E2f6|50496|E2F transcription factor 6
mm9_v1_chr12_+_16817772_16817797	0.389133	CDX1,2,4.p2	AK035116|E2f6|50496|E2F transcription factor 6	AK146792|E2f6|50496|E2F transcription factor 6	BC057929|E2f6|50496|E2F transcription factor 6	BC019166|E2f6|50496|E2F transcription factor 6
mm9_v1_chr9_+_44143931_44144022	0.38883	CDX1,2,4.p2	
mm9_v1_chr7_-_107731579_107731643	0.387679	CDX1,2,4.p2	AK077636|Mrpl48|52443|mitochondrial ribosomal protein L48	BC037190|Mrpl48|52443|mitochondrial ribosomal protein L48	AK019161|Mrpl48|52443|mitochondrial ribosomal protein L48	AK171917|Mrpl48|52443|mitochondrial ribosomal protein L48	NM_198831|Mrpl48|52443|mitochondrial ribosomal protein L48
mm9_v1_chr7_+_19589395_19589469	0.387219	CDX1,2,4.p2	AK087457|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	AK031834|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	BC036162|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	NM_178757|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1	AK032010|Irf2bp1|272359|interferon regulatory factor 2 binding protein 1
mm9_v1_chr6_-_90612275_90612375	0.386561	CDX1,2,4.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr19_-_41922577_41922621	0.38545	CDX1,2,4.p2	BC034214|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	BC085510|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	AK081171|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2	NM_177603|Frat2|212398|frequently rearranged in advanced T-cell lymphomas 2
mm9_v1_chr7_+_30023368_30023534	0.384986	CDX1,2,4.p2	AK020444|Yif1b|77254|Yip1 interacting factor homolog B (S. cerevisiae)
mm9_v1_chr18_+_80403577_80403580	0.383006	CDX1,2,4.p2	AK004039|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr4_-_132895019_132895110	0.38206	CDX1,2,4.p2	BC048824|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr14_+_115491514_115491644	0.38168	CDX1,2,4.p2	BC115712|Gpc5|103978|glypican 5
mm9_v1_chr17_-_33822327_33822413	0.379268	CDX1,2,4.p2	BC035525|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK159848|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC017539|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	BC065172|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK168347|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK133911|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK166670|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK169101|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK171892|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK145343|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK011521|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK051976|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	AK220299|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_001109913|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M	NM_029804|Hnrnpm|76936|heterogeneous nuclear ribonucleoprotein M
mm9_v1_chr13_+_59686693_59686787	0.378744	CDX1,2,4.p2	NM_030153|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC027201|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	AY102701|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC043701|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC056435|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm9_v1_chr19_+_12535536_12535672	0.375294	CDX1,2,4.p2	L20315|Mpeg1|17476|macrophage expressed gene 1	BC129843|Mpeg1|17476|macrophage expressed gene 1	BC129844|Mpeg1|17476|macrophage expressed gene 1
mm9_v1_chr9_+_85739048_85739158	0.373119	CDX1,2,4.p2	AK050794|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr4_-_11181373_11181380	0.372572	CDX1,2,4.p2	AK169552|Ints8|72656|integrator complex subunit 8	AK049513|Ints8|72656|integrator complex subunit 8
mm9_v1_chr2_+_34631124_34631274	0.372465	CDX1,2,4.p2	M30779|Hspa5|14828|heat shock protein 5	M19351|Hspa5|14828|heat shock protein 5	AK198632|Hspa5|14828|heat shock protein 5	AK215158|Hspa5|14828|heat shock protein 5
mm9_v1_chr1_+_67169588_67169639	0.37157	CDX1,2,4.p2	BC126969|Cps1|227231|carbamoyl-phosphate synthetase 1	NM_001080809|Cps1|227231|carbamoyl-phosphate synthetase 1
mm9_v1_chr7_-_25873560_25873562	0.370615	CDX1,2,4.p2	
mm9_v1_chr5_-_118605455_118605474	0.369927	CDX1,2,4.p2	AK031815|Fbxw8|231672|F-box and WD-40 domain protein 8	AK053794|Fbxw8|231672|F-box and WD-40 domain protein 8	NM_172721|Fbxw8|231672|F-box and WD-40 domain protein 8	AK134291|Fbxw8|231672|F-box and WD-40 domain protein 8
mm9_v1_chr1_-_179178874_179178897	0.369641	CDX1,2,4.p2	AF124142|Akt3|23797|thymoma viral proto-oncogene 3	BC066861|Akt3|23797|thymoma viral proto-oncogene 3	NM_011785|Akt3|23797|thymoma viral proto-oncogene 3
mm9_v1_chr5_-_123438517_123438541	0.36923	CDX1,2,4.p2	NM_001005866|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr10_+_18127443_18127504	0.368816	CDX1,2,4.p2	AK041760|Nhsl1|215819|NHS-like 1	AK017530|Nhsl1|215819|NHS-like 1	NM_173390|Nhsl1|215819|NHS-like 1	AK038892|Nhsl1|215819|NHS-like 1
mm9_v1_chr8_-_11635748_11635782	0.368725	CDX1,2,4.p2	AK031808|Ankrd10|102334|ankyrin repeat domain 10	AK033623|Ankrd10|102334|ankyrin repeat domain 10	AK038156|Ankrd10|102334|ankyrin repeat domain 10	AK042500|Ankrd10|102334|ankyrin repeat domain 10	AK081754|Ankrd10|102334|ankyrin repeat domain 10	AK082875|Ankrd10|102334|ankyrin repeat domain 10	AK084456|Ankrd10|102334|ankyrin repeat domain 10	AK143253|Ankrd10|102334|ankyrin repeat domain 10	NM_001167967|Ankrd10|102334|ankyrin repeat domain 10	NM_133971|Ankrd10|102334|ankyrin repeat domain 10	AK050983|Ankrd10|102334|ankyrin repeat domain 10
mm9_v1_chr2_+_151319915_151320083	0.367002	CDX1,2,4.p2	AK039136|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK137088|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK013024|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC050936|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	NM_198326|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC106101|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK181317|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)
mm9_v1_chr1_+_136321327_136321456	0.366373	CDX1,2,4.p2	AK214372|Adipor1|72674|adiponectin receptor 1	AK180261|Adipor1|72674|adiponectin receptor 1
mm9_v1_chr2_-_59963586_59963753	0.366045	CDX1,2,4.p2	BC150814|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK029386|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK134250|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK173180|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B	AK030867|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr14_+_56097594_56097633	0.366028	CDX1,2,4.p2	NM_001037938|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	NM_030686|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC054361|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr4_+_154929136_154929270	0.36519	CDX1,2,4.p2	AK218112|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK190349|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK191980|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK199789|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK200062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr1_-_180267913_180267920	0.364849	CDX1,2,4.p2	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr4_+_153331341_153331408	0.364785	CDX1,2,4.p2	AK039812|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	BC052148|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_001163019|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene	NM_175287|A430005L14Rik|97159|RIKEN cDNA A430005L14 gene
mm9_v1_chr16_+_33684551_33684609	0.362111	CDX1,2,4.p2	AK028518|Heg1|77446|HEG homolog 1 (zebrafish)	AK163128|Heg1|77446|HEG homolog 1 (zebrafish)	NM_175256|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chr9_-_119213954_119213965	0.361975	CDX1,2,4.p2	AK031790|Oxsr1|108737|oxidative-stress responsive 1	AK075837|Oxsr1|108737|oxidative-stress responsive 1	NM_133985|Oxsr1|108737|oxidative-stress responsive 1
mm9_v1_chr7_+_65913571_65913874	0.361367	CDX1,2,4.p2	NM_009728|Atp10a|11982|ATPase, class V, type 10A	AK132174|Atp10a|11982|ATPase, class V, type 10A	AK172149|Atp10a|11982|ATPase, class V, type 10A	AF156549|Atp10a|11982|ATPase, class V, type 10A	BC138356|Atp10a|11982|ATPase, class V, type 10A	BC138357|Atp10a|11982|ATPase, class V, type 10A	AK172972|Atp10a|11982|ATPase, class V, type 10A	AF011337|Atp10a|11982|ATPase, class V, type 10A
mm9_v1_chr12_+_17277227_17277235	0.35925	CDX1,2,4.p2	AK192703|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr18_-_36926866_36926900	0.359215	CDX1,2,4.p2	
mm9_v1_chr5_-_134790277_134790348	0.358861	CDX1,2,4.p2	BC047387|Gtf2i|14886|general transcription factor II I
mm9_v1_chr8_+_13785611_13785668	0.357557	CDX1,2,4.p2	AK020823|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC116988|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC119035|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	NM_025924|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK033239|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK011127|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK166277|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK016053|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK145471|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)
mm9_v1_chr9_-_30957394_30957461	0.355566	CDX1,2,4.p2	
mm9_v1_chr9_+_72584532_72584702	0.354648	CDX1,2,4.p2	BC007184|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr5_-_5265981_5266073	0.354261	CDX1,2,4.p2	AK083269|Cdk14|18647|cyclin-dependent kinase 14	AK139386|Cdk14|18647|cyclin-dependent kinase 14	BC068134|Cdk14|18647|cyclin-dependent kinase 14	AK138437|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chrM_+_3913_4410	0.354024	CDX1,2,4.p2	
mm9_v1_chr17_-_43013320_43013409	0.353067	CDX1,2,4.p2	BC138374|Cd2ap|12488|CD2-associated protein	BC157901|Cd2ap|12488|CD2-associated protein	AK045218|Cd2ap|12488|CD2-associated protein	NM_009847|Cd2ap|12488|CD2-associated protein
mm9_v1_chr8_-_90483392_90483493	0.353032	CDX1,2,4.p2	AY256893|Zfp423|94187|zinc finger protein 423	AK122365|Zfp423|94187|zinc finger protein 423	NM_033327|Zfp423|94187|zinc finger protein 423
mm9_v1_chr4_+_48552806_48552952	0.352841	CDX1,2,4.p2	AK075956|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145925|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK017795|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK011381|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145924|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr6_+_100783598_100783865	0.351911	CDX1,2,4.p2	BC110429|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK082539|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	NM_182939|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK084169|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC112399|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC056340|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC098464|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2
mm9_v1_chr13_+_108834624_108834692	0.350591	CDX1,2,4.p2	BC069965|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	AK088529|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	AK139507|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene	NM_001048250|2810008M24Rik|75616|RIKEN cDNA 2810008M24 gene
mm9_v1_chr3_+_66023808_66023844	0.348986	CDX1,2,4.p2	NM_008987|Ptx3|19288|pentraxin related gene	BC022176|Ptx3|19288|pentraxin related gene
mm9_v1_chr1_-_174128558_174128619	0.347653	CDX1,2,4.p2	BC092079|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr5_-_101103051_101103304	0.345164	CDX1,2,4.p2	BC080773|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)	AK009092|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)	NM_027978|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)
mm9_v1_chr14_-_99498905_99499000	0.34251	CDX1,2,4.p2	AK012840|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	BC027357|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	AK038313|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)	NM_028315|Dis3|72662|DIS3 mitotic control homolog (S. cerevisiae)
mm9_v1_chr1_+_174051888_174051985	0.342274	CDX1,2,4.p2	
mm9_v1_chrX_-_160514370_160514457	0.34138	CDX1,2,4.p2	
mm9_v1_chr2_-_75819804_75820023	0.341137	CDX1,2,4.p2	BC004773|Ttc30a1|78802|tetratricopeptide repeat domain 30A1	AK045096|Ttc30a1|78802|tetratricopeptide repeat domain 30A1	AK029535|Ttc30a1|78802|tetratricopeptide repeat domain 30A1	AK019670|Ttc30a1|78802|tetratricopeptide repeat domain 30A1	NM_030188|Ttc30a1|78802|tetratricopeptide repeat domain 30A1
mm9_v1_chr18_+_80403593_80403727	0.340898	CDX1,2,4.p2	BC031634|Txnl4a|27366|thioredoxin-like 4A	BC014770|Txnl4a|27366|thioredoxin-like 4A	NM_001042408|Txnl4a|27366|thioredoxin-like 4A	AK011717|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr3_+_94641626_94641643	0.340453	CDX1,2,4.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr13_-_23712946_23712992	0.34015	CDX1,2,4.p2	AK049948|Hist1h2be|319179|histone cluster 1, H2be	NM_001177653|Hist1h2be|319179|histone cluster 1, H2be	AK030546|Hist1h2be|319179|histone cluster 1, H2be	NM_178194|Hist1h2be|319179|histone cluster 1, H2be
mm9_v1_chr15_+_36103785_36103843	0.340119	CDX1,2,4.p2	AK003023|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK018914|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008136|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	AK008287|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	BC028543|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K	S63758|Polr2k|17749|polymerase (RNA) II (DNA directed) polypeptide K
mm9_v1_chr15_+_99984826_99984839	0.339999	CDX1,2,4.p2	AK030064|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	NM_172819|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137857|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137858|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr17_+_46633703_46633755	0.335825	CDX1,2,4.p2	BC082791|BC048355|381101|cDNA sequence BC048355	AK146723|BC048355|381101|cDNA sequence BC048355	NM_207161|BC048355|381101|cDNA sequence BC048355	BC048355|BC048355|381101|cDNA sequence BC048355	AK151589|BC048355|381101|cDNA sequence BC048355
mm9_v1_chr15_+_103103335_103103351	0.334908	CDX1,2,4.p2	BC085314|Copz1|56447|coatomer protein complex, subunit zeta 1	AK003302|Copz1|56447|coatomer protein complex, subunit zeta 1	AK167636|Copz1|56447|coatomer protein complex, subunit zeta 1	BC002246|Copz1|56447|coatomer protein complex, subunit zeta 1	BC025041|Copz1|56447|coatomer protein complex, subunit zeta 1	BC039920|Copz1|56447|coatomer protein complex, subunit zeta 1	BC062203|Copz1|56447|coatomer protein complex, subunit zeta 1	AB037370|Copz1|56447|coatomer protein complex, subunit zeta 1	NM_019817|Copz1|56447|coatomer protein complex, subunit zeta 1	BC052891|Copz1|56447|coatomer protein complex, subunit zeta 1	BC058524|Copz1|56447|coatomer protein complex, subunit zeta 1
mm9_v1_chr2_+_104430617_104430708	0.334414	CDX1,2,4.p2	AK158169|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_001037326|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_145529|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	NM_177253|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC003241|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	BC058605|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3	AK028899|Cstf3|228410|cleavage stimulation factor, 3' pre-RNA, subunit 3
mm9_v1_chr2_-_120389527_120389553	0.334383	CDX1,2,4.p2	BC025424|Zfp106|20402|zinc finger protein 106
mm9_v1_chr6_+_136467388_136467391	0.333127	CDX1,2,4.p2	BC060246|Atf7ip|54343|activating transcription factor 7 interacting protein
mm9_v1_chr16_+_22920274_22920459	0.331003	CDX1,2,4.p2	NM_001083904|Fetub|59083|fetuin beta	NM_021564|Fetub|59083|fetuin beta	AY138459|Fetub|59083|fetuin beta	AJ242927|Fetub|59083|fetuin beta
mm9_v1_chrX_-_9694712_9694834	0.329586	CDX1,2,4.p2	AB028049|Srpx|51795|sushi-repeat-containing protein	AB028050|Srpx|51795|sushi-repeat-containing protein	BC022572|Srpx|51795|sushi-repeat-containing protein	AK034696|Srpx|51795|sushi-repeat-containing protein	NM_016911|Srpx|51795|sushi-repeat-containing protein	BC027630|Srpx|51795|sushi-repeat-containing protein	AK159662|Srpx|51795|sushi-repeat-containing protein
mm9_v1_chr8_+_73282270_73282383	0.328238	CDX1,2,4.p2	
mm9_v1_chr8_-_47209499_47209499	0.3279	CDX1,2,4.p2	NM_207213|Snx25|102141|sorting nexin 25
mm9_v1_chr17_-_46290473_46290486	0.327845	CDX1,2,4.p2	AK002377|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr15_+_65703468_65703625	0.325416	CDX1,2,4.p2	AK039483|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chrX_+_155897136_155897153	0.32367	CDX1,2,4.p2	AK005554|Mtap7d2|78283|MAP7 domain containing 2	AK030316|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr19_-_60842585_60842735	0.322127	CDX1,2,4.p2	BC169258|Eif3a|13669|eukaryotic translation initiation factor 3, subunit A
mm9_v1_chr7_-_140179678_140180024	0.32061	CDX1,2,4.p2	AK187460|Ctbp2|13017|C-terminal binding protein 2	AK161077|Ctbp2|13017|C-terminal binding protein 2	AK198744|Ctbp2|13017|C-terminal binding protein 2	AK199198|Ctbp2|13017|C-terminal binding protein 2	AK201071|Ctbp2|13017|C-terminal binding protein 2	AK217772|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr14_-_52924739_52924784	0.317608	CDX1,2,4.p2	AK089158|Mettl3|56335|methyltransferase like 3	AF135789|Mettl3|56335|methyltransferase like 3	BC012526|Mettl3|56335|methyltransferase like 3	AK085189|Mettl3|56335|methyltransferase like 3	AK151616|Mettl3|56335|methyltransferase like 3	AK153113|Mettl3|56335|methyltransferase like 3
mm9_v1_chr8_+_72178388_72178454	0.314318	CDX1,2,4.p2	AK076396|Zfp964|636741|zinc finger protein 964	BC138280|Zfp964|636741|zinc finger protein 964	BC145229|Zfp964|636741|zinc finger protein 964	NM_001177527|Zfp964|636741|zinc finger protein 964
mm9_v1_chr1_+_34364633_34364780	0.308593	CDX1,2,4.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr14_-_62250728_62250729	0.308147	CDX1,2,4.p2	AK143097|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK162803|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK164623|Dleu2|668253|deleted in lymphocytic leukemia, 2
mm9_v1_chr7_-_148452299_148452324	0.307659	CDX1,2,4.p2	NM_016850|Irf7|54123|interferon regulatory factor 7	U73037|Irf7|54123|interferon regulatory factor 7	AK004349|Irf7|54123|interferon regulatory factor 7	AK150608|Irf7|54123|interferon regulatory factor 7	AK158378|Irf7|54123|interferon regulatory factor 7	AK158403|Irf7|54123|interferon regulatory factor 7	AK089869|Irf7|54123|interferon regulatory factor 7	AK002830|Irf7|54123|interferon regulatory factor 7	AK079685|Irf7|54123|interferon regulatory factor 7	AK150403|Irf7|54123|interferon regulatory factor 7	AK151470|Irf7|54123|interferon regulatory factor 7	AK152401|Irf7|54123|interferon regulatory factor 7	AK152403|Irf7|54123|interferon regulatory factor 7	AK153054|Irf7|54123|interferon regulatory factor 7	AK155950|Irf7|54123|interferon regulatory factor 7	AK159142|Irf7|54123|interferon regulatory factor 7	AK159883|Irf7|54123|interferon regulatory factor 7
mm9_v1_chr11_-_101321789_101321881	0.307286	CDX1,2,4.p2	AK216339|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr10_-_29920326_29920345	0.307066	CDX1,2,4.p2	AK005988|Cenpw|66311|centromere protein W	AK011700|Cenpw|66311|centromere protein W	AK141272|Cenpw|66311|centromere protein W	BC147188|Cenpw|66311|centromere protein W	BC147189|Cenpw|66311|centromere protein W	BC147710|Cenpw|66311|centromere protein W	BC147721|Cenpw|66311|centromere protein W	NM_001109747|Cenpw|66311|centromere protein W
mm9_v1_chr13_-_21494549_21494625	0.306614	CDX1,2,4.p2	BC007473|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK031286|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK031080|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK050028|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	AK028902|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	NM_001145778|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3	NM_023685|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3
mm9_v1_chr18_+_36953553_36953593	0.306336	CDX1,2,4.p2	BC024881|Zmat2|66492|zinc finger, matrin type 2	NM_025594|Zmat2|66492|zinc finger, matrin type 2	AK012091|Zmat2|66492|zinc finger, matrin type 2	BC089501|Zmat2|66492|zinc finger, matrin type 2	AK008717|Zmat2|66492|zinc finger, matrin type 2
mm9_v1_chr11_-_72225084_72225217	0.305274	CDX1,2,4.p2	AK085988|Smtnl2|276829|smoothelin-like 2	BC037993|Smtnl2|276829|smoothelin-like 2	AK051585|Smtnl2|276829|smoothelin-like 2	NM_177776|Smtnl2|276829|smoothelin-like 2
mm9_v1_chr13_-_9764195_9764212	0.305183	CDX1,2,4.p2	BC058999|Zmynd11|66505|zinc finger, MYND domain containing 11
mm9_v1_chr6_+_38484796_38484868	0.304212	CDX1,2,4.p2	AK003231|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	BC059710|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	AK008291|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	NM_025363|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	AK009186|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene
mm9_v1_chr9_+_65738129_65738143	0.303143	CDX1,2,4.p2	AK011090|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene	NM_026515|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr2_+_102498839_102498845	0.301276	CDX1,2,4.p2	AK134609|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	NM_001077514|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2	AK140095|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr9_+_56919839_56919849	0.300598	CDX1,2,4.p2	NM_001110351|Sin3a|20466|transcriptional regulator, SIN3A (yeast)
mm9_v1_chr10_-_53349752_53349783	0.3005	CDX1,2,4.p2	AK139112|Mcm9|71567|minichromosome maintenance complex component 9	AK046636|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chr10_+_79174337_79174350	0.300324	CDX1,2,4.p2	AK210944|Bsg|12215|basigin
mm9_v1_chr8_-_11199802_11199859	0.29929	CDX1,2,4.p2	X92439|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chrX_+_42444080_42444121	0.299228	CDX1,2,4.p2	BC060289|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene	NM_026841|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene	BC094615|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene
mm9_v1_chr4_+_148478290_148478305	0.297841	CDX1,2,4.p2	AK079634|Dffa|13347|DNA fragmentation factor, alpha subunit	BC058213|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr2_-_120389559_120389604	0.297088	CDX1,2,4.p2	AK147887|Zfp106|20402|zinc finger protein 106	AK089359|Zfp106|20402|zinc finger protein 106	AK155019|Zfp106|20402|zinc finger protein 106	NM_011743|Zfp106|20402|zinc finger protein 106
mm9_v1_chr16_+_17331507_17331521	0.297055	CDX1,2,4.p2	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr10_-_126467848_126467902	0.296966	CDX1,2,4.p2	BC034286|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK020437|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK169164|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK018591|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK141183|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK012240|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK171656|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK172112|Tsfm|66399|Ts translation elongation factor, mitochondrial	BC057904|Tsfm|66399|Ts translation elongation factor, mitochondrial	NM_025537|Tsfm|66399|Ts translation elongation factor, mitochondrial
mm9_v1_chr16_+_32914183_32914232	0.296863	CDX1,2,4.p2	AK155550|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	NM_001081255|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK076529|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC151058|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC157924|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	BC172144|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3	AK133482|Lrch3|70144|leucine-rich repeats and calponin homology (CH) domain containing 3
mm9_v1_chr6_+_86321479_86321568	0.296784	CDX1,2,4.p2	BC051470|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK013235|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	NM_026506|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK011129|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK012802|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	BC094411|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	BC027499|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G	AK017852|Snrpg|68011|small nuclear ribonucleoprotein polypeptide G
mm9_v1_chr7_-_34977928_34978057	0.296444	CDX1,2,4.p2	BC025090|Pdcd2l|68079|programmed cell death 2-like	BC038524|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chrX_+_97821403_97821491	0.295285	CDX1,2,4.p2	NM_008446|Kif4|16571|kinesin family member 4	AK084837|Kif4|16571|kinesin family member 4	AK135179|Kif4|16571|kinesin family member 4	BC050946|Kif4|16571|kinesin family member 4	BC054537|Kif4|16571|kinesin family member 4	AK171938|Kif4|16571|kinesin family member 4
mm9_v1_chr11_-_120459646_120459770	0.295076	CDX1,2,4.p2	AJ252140|Thoc4|21681|THO complex 4	NM_011568|Thoc4|21681|THO complex 4	U89876|Thoc4|21681|THO complex 4	BC120588|Thoc4|21681|THO complex 4	BC137658|Thoc4|21681|THO complex 4
mm9_v1_chr16_-_11220854_11220973	0.294938	CDX1,2,4.p2	AK218484|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr3_-_88717730_88717876	0.294193	CDX1,2,4.p2	AK163280|Msto1|229524|misato homolog 1 (Drosophila)	BC108354|Msto1|229524|misato homolog 1 (Drosophila)	AK167586|Msto1|229524|misato homolog 1 (Drosophila)	BC008103|Msto1|229524|misato homolog 1 (Drosophila)	AK166834|Msto1|229524|misato homolog 1 (Drosophila)	AK166236|Msto1|229524|misato homolog 1 (Drosophila)	AK170160|Msto1|229524|misato homolog 1 (Drosophila)	AK139708|Msto1|229524|misato homolog 1 (Drosophila)	NM_144898|Msto1|229524|misato homolog 1 (Drosophila)
mm9_v1_chr4_-_142889312_142889356	0.293655	CDX1,2,4.p2	M73748|Pdpn|14726|podoplanin	BC026551|Pdpn|14726|podoplanin
mm9_v1_chr8_-_4217275_4217311	0.292638	CDX1,2,4.p2	BC068157|BC068157|73072|cDNA sequence BC068157	NM_207203|BC068157|73072|cDNA sequence BC068157
mm9_v1_chr2_-_65405546_65405588	0.291613	CDX1,2,4.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr5_+_150921233_150921280	0.290325	CDX1,2,4.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr10_+_127707555_127707756	0.290297	CDX1,2,4.p2	AK149924|Stat2|20847|signal transducer and activator of transcription 2	AK150070|Stat2|20847|signal transducer and activator of transcription 2	AK149838|Stat2|20847|signal transducer and activator of transcription 2	AF187231|Stat2|20847|signal transducer and activator of transcription 2	AF206162|Stat2|20847|signal transducer and activator of transcription 2	NM_019963|Stat2|20847|signal transducer and activator of transcription 2	AF088862|Stat2|20847|signal transducer and activator of transcription 2
mm9_v1_chr15_+_102126686_102126729	0.29003	CDX1,2,4.p2	BC082603|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)	NM_001014976|Espl1|105988|extra spindle poles-like 1 (S. cerevisiae)
mm9_v1_chr15_-_98748371_98748661	0.289534	CDX1,2,4.p2	AY052398|Lmbr1l|74775|limb region 1 like	AK003656|Lmbr1l|74775|limb region 1 like	BC023397|Lmbr1l|74775|limb region 1 like	AK170328|Lmbr1l|74775|limb region 1 like	AK143891|Lmbr1l|74775|limb region 1 like	AK030589|Lmbr1l|74775|limb region 1 like	AK049110|Lmbr1l|74775|limb region 1 like	NM_029098|Lmbr1l|74775|limb region 1 like	AK154968|Lmbr1l|74775|limb region 1 like
mm9_v1_chr13_+_55828701_55828778	0.288226	CDX1,2,4.p2	NM_028281|Pcbd2|72562|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	AK012465|Pcbd2|72562|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	BC028642|Pcbd2|72562|pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2
mm9_v1_chr6_+_29222698_29222749	0.286592	CDX1,2,4.p2	BC083056|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	AF141311|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr12_+_73885063_73885417	0.28657	CDX1,2,4.p2	AK178989|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform	AK181077|Ppm1a|19042|protein phosphatase 1A, magnesium dependent, alpha isoform
mm9_v1_chr7_-_71518926_71518980	0.285573	CDX1,2,4.p2	BC116270|Fan1|330554|FANCD2/FANCI-associated nuclease 1	BC116271|Fan1|330554|FANCD2/FANCI-associated nuclease 1	AK077918|Fan1|330554|FANCD2/FANCI-associated nuclease 1	NM_177893|Fan1|330554|FANCD2/FANCI-associated nuclease 1
mm9_v1_chr4_-_11892848_11892892	0.285227	CDX1,2,4.p2	BC048372|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1	NM_001098231|Pdp1|381511|pyruvate dehyrogenase phosphatase catalytic subunit 1
mm9_v1_chr12_-_13227172_13227259	0.285138	CDX1,2,4.p2	
mm9_v1_chr8_-_3467624_3467679	0.284395	CDX1,2,4.p2	BC062135|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK007848|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK007582|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	NM_026951|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	AK165461|Pex11c|69129|peroxisomal biogenesis factor 11 gamma	BC024096|Pex11c|69129|peroxisomal biogenesis factor 11 gamma
mm9_v1_chr11_-_101323802_101323881	0.284331	CDX1,2,4.p2	BC024586|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK181513|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK183725|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)	AK199516|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr13_+_36209724_36209798	0.283666	CDX1,2,4.p2	AK020164|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	AK170986|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	AK076259|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	AK054370|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	BC002147|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	AK013211|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr3_+_95465860_95465866	0.283258	CDX1,2,4.p2	AK160634|Mcl1|17210|myeloid cell leukemia sequence 1
mm9_v1_chr10_+_82323249_82323266	0.282397	CDX1,2,4.p2	AK172383|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr13_-_100114593_100114662	0.281408	CDX1,2,4.p2	BC016563|Ptcd2|68927|pentatricopeptide repeat domain 2	BC025110|Ptcd2|68927|pentatricopeptide repeat domain 2	NM_026873|Ptcd2|68927|pentatricopeptide repeat domain 2	AK004502|Ptcd2|68927|pentatricopeptide repeat domain 2	AK144396|Ptcd2|68927|pentatricopeptide repeat domain 2
mm9_v1_chr4_-_11181388_11181409	0.279998	CDX1,2,4.p2	AK140829|Ints8|72656|integrator complex subunit 8	NM_001159595|Ints8|72656|integrator complex subunit 8	NM_178112|Ints8|72656|integrator complex subunit 8
mm9_v1_chrM_+_7714_7790	0.279939	CDX1,2,4.p2	AF093677|ATP6|17705|ATP synthase F0 subunit 6	BC069931|Gm10925|100191075|predicted gene 10925
mm9_v1_chr11_-_97643718_97643767	0.279465	CDX1,2,4.p2	NM_022891|Rpl23|65019|ribosomal protein L23
mm9_v1_chr8_-_118231677_118231736	0.27941	CDX1,2,4.p2	S74567|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	AK019255|Maf|17132|avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
mm9_v1_chr5_-_144031666_144031702	0.278766	CDX1,2,4.p2	NM_017467|Zfp316|54201|zinc finger protein 316
mm9_v1_chr2_+_173563060_173563229	0.278586	CDX1,2,4.p2	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr13_+_100877966_100878073	0.278384	CDX1,2,4.p2	NM_011353|Serf1|20365|small EDRK-rich factor 1	AF073517|Serf1|20365|small EDRK-rich factor 1	BC028510|Serf1|20365|small EDRK-rich factor 1	AK012379|Serf1|20365|small EDRK-rich factor 1	AK005773|Serf1|20365|small EDRK-rich factor 1
mm9_v1_chr14_+_62218348_62218392	0.278348	CDX1,2,4.p2	NM_023233|Trim13|66597|tripartite motif-containing 13	AK013959|Trim13|66597|tripartite motif-containing 13	AK017850|Trim13|66597|tripartite motif-containing 13
mm9_v1_chr4_-_133650937_133651017	0.277851	CDX1,2,4.p2	BC027495|Cd52|23833|CD52 antigen	AK088161|Cd52|23833|CD52 antigen	X76696|Cd52|23833|CD52 antigen	M55561|Cd52|23833|CD52 antigen	AK155728|Cd52|23833|CD52 antigen	NM_013706|Cd52|23833|CD52 antigen
mm9_v1_chr11_+_29618696_29618843	0.277441	CDX1,2,4.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr17_-_23923163_23923198	0.277193	CDX1,2,4.p2	BC024947|Flywch2|76917|FLYWCH family member 2
mm9_v1_chr1_-_121545442_121545576	0.274601	CDX1,2,4.p2	AK034676|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK047523|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK173198|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	BC011476|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044959|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK044996|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK079301|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK161141|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK027983|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK037024|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK136125|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK040354|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	AK167449|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_001113416|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5	NM_145506|Epb4.1l5|226352|erythrocyte protein band 4.1-like 5
mm9_v1_chr14_-_34195326_34195332	0.272103	CDX1,2,4.p2	AK047936|Mapk8|26419|mitogen-activated protein kinase 8	AK053062|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chr4_+_44313764_44313857	0.271939	CDX1,2,4.p2	AK137000|Melk|17279|maternal embryonic leucine zipper kinase	AK161029|Melk|17279|maternal embryonic leucine zipper kinase	AK011932|Melk|17279|maternal embryonic leucine zipper kinase	NM_010790|Melk|17279|maternal embryonic leucine zipper kinase	AK010498|Melk|17279|maternal embryonic leucine zipper kinase	AK164138|Melk|17279|maternal embryonic leucine zipper kinase	BC055065|Melk|17279|maternal embryonic leucine zipper kinase	AK129076|Melk|17279|maternal embryonic leucine zipper kinase	X95351|Melk|17279|maternal embryonic leucine zipper kinase	AK145021|Melk|17279|maternal embryonic leucine zipper kinase	L76158|Melk|17279|maternal embryonic leucine zipper kinase
mm9_v1_chr5_+_38651466_38651637	0.271779	CDX1,2,4.p2	BC025197|Tmem128|66309|transmembrane protein 128	AK012789|Tmem128|66309|transmembrane protein 128	AK013227|Tmem128|66309|transmembrane protein 128	AK080853|Tmem128|66309|transmembrane protein 128	NM_025480|Tmem128|66309|transmembrane protein 128	AK162257|Tmem128|66309|transmembrane protein 128	AK076679|Tmem128|66309|transmembrane protein 128	BC060969|Tmem128|66309|transmembrane protein 128	BC110310|Tmem128|66309|transmembrane protein 128
mm9_v1_chr19_-_40261753_40261779	0.271701	CDX1,2,4.p2	BC022151|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC023894|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AY227736|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC034831|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC016494|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AK050082|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	NM_145499|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70
mm9_v1_chr2_+_152561983_152562076	0.271462	CDX1,2,4.p2	M31885|Id1|15901|inhibitor of DNA binding 1	AK008264|Id1|15901|inhibitor of DNA binding 1	BC025073|Id1|15901|inhibitor of DNA binding 1	NM_010495|Id1|15901|inhibitor of DNA binding 1	U43884|Id1|15901|inhibitor of DNA binding 1	AB221668|Id1|15901|inhibitor of DNA binding 1	CT010243|Id1|15901|inhibitor of DNA binding 1
mm9_v1_chr7_+_20094042_20094114	0.271132	CDX1,2,4.p2	BC106114|Trappc6a|67091|trafficking protein particle complex 6A	NM_025960|Trappc6a|67091|trafficking protein particle complex 6A	AK007965|Trappc6a|67091|trafficking protein particle complex 6A	AK008022|Trappc6a|67091|trafficking protein particle complex 6A	AK008462|Trappc6a|67091|trafficking protein particle complex 6A	AK088832|Trappc6a|67091|trafficking protein particle complex 6A	BC020128|Trappc6a|67091|trafficking protein particle complex 6A	AK015839|Trappc6a|67091|trafficking protein particle complex 6A
mm9_v1_chr16_+_27388907_27389196	0.270962	CDX1,2,4.p2	BC144895|Ccdc50|67501|coiled-coil domain containing 50	BC144898|Ccdc50|67501|coiled-coil domain containing 50	BC145933|Ccdc50|67501|coiled-coil domain containing 50	BC145935|Ccdc50|67501|coiled-coil domain containing 50	NM_001025615|Ccdc50|67501|coiled-coil domain containing 50	NM_026202|Ccdc50|67501|coiled-coil domain containing 50	AK162434|Ccdc50|67501|coiled-coil domain containing 50	AK016827|Ccdc50|67501|coiled-coil domain containing 50	AK151672|Ccdc50|67501|coiled-coil domain containing 50	AK147820|Ccdc50|67501|coiled-coil domain containing 50	AK077557|Ccdc50|67501|coiled-coil domain containing 50	AK165214|Ccdc50|67501|coiled-coil domain containing 50	AK012190|Ccdc50|67501|coiled-coil domain containing 50	AJ534985|Ccdc50|67501|coiled-coil domain containing 50
mm9_v1_chr18_+_42713035_42713061	0.270511	CDX1,2,4.p2	AK165067|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr11_+_20991293_20991320	0.269779	CDX1,2,4.p2	AK020915|Peli1|67245|pellino 1
mm9_v1_chr18_+_80409068_80409205	0.269744	CDX1,2,4.p2	AK183256|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr12_-_82586058_82586128	0.269298	CDX1,2,4.p2	AK008486|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC005675|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK007450|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK007562|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK040003|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK082374|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK087666|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK088794|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_025461|Cox16|66272|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr13_+_76718869_76718988	0.268953	CDX1,2,4.p2	AK154322|Mctp1|78771|multiple C2 domains, transmembrane 1	AK144765|Mctp1|78771|multiple C2 domains, transmembrane 1
mm9_v1_chr3_-_158225075_158225097	0.268728	CDX1,2,4.p2	BC138450|Lrrc7|242274|leucine rich repeat containing 7
mm9_v1_chr8_+_70018744_70018846	0.267305	CDX1,2,4.p2	AK007583|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	BC012972|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_001168577|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	AJ251710|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)	NM_010874|Nat2|17961|N-acetyltransferase 2 (arylamine N-acetyltransferase)
mm9_v1_chr17_-_65944300_65944335	0.267123	CDX1,2,4.p2	AK149040|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr12_+_87423503_87423572	0.267055	CDX1,2,4.p2	AK006115|1700019E19Rik|76411|RIKEN cDNA 1700019E19 gene	NM_029601|1700019E19Rik|76411|RIKEN cDNA 1700019E19 gene	BC038915|1700019E19Rik|76411|RIKEN cDNA 1700019E19 gene	BC034668|1700019E19Rik|76411|RIKEN cDNA 1700019E19 gene
mm9_v1_chr17_-_45570655_45570685	0.266494	CDX1,2,4.p2	BC031480|Cdc5l|71702|cell division cycle 5-like (S. pombe)	NM_152810|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK004547|Cdc5l|71702|cell division cycle 5-like (S. pombe)
mm9_v1_chr10_+_79620689_79620701	0.266143	CDX1,2,4.p2	AK013865|Midn|59090|midnolin
mm9_v1_chr15_-_95358989_95359075	0.265982	CDX1,2,4.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr6_+_127403631_127403740	0.2658	CDX1,2,4.p2	AK133697|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	BC040269|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	NM_181402|Parp11|101187|poly (ADP-ribose) polymerase family, member 11
mm9_v1_chrX_+_35548300_35548338	0.265759	CDX1,2,4.p2	AK080301|Zbtb33|56805|zinc finger and BTB domain containing 33
mm9_v1_chr10_+_18189773_18189786	0.264923	CDX1,2,4.p2	BC030842|Nhsl1|215819|NHS-like 1	NM_001163592|Nhsl1|215819|NHS-like 1
mm9_v1_chr15_+_83393975_83394050	0.263714	CDX1,2,4.p2	NM_009775|Tspo|12257|translocator protein	AK151824|Tspo|12257|translocator protein	AK153273|Tspo|12257|translocator protein	AK165822|Tspo|12257|translocator protein	AK166125|Tspo|12257|translocator protein	AK151569|Tspo|12257|translocator protein	AK156489|Tspo|12257|translocator protein	AK172384|Tspo|12257|translocator protein	AK149743|Tspo|12257|translocator protein	AK151421|Tspo|12257|translocator protein	AK152860|Tspo|12257|translocator protein	AK153159|Tspo|12257|translocator protein	AK165450|Tspo|12257|translocator protein	AK150516|Tspo|12257|translocator protein	AK152082|Tspo|12257|translocator protein	AK152827|Tspo|12257|translocator protein	BC002055|Tspo|12257|translocator protein	D21207|Tspo|12257|translocator protein
mm9_v1_chr7_-_3629631_3629799	0.263111	CDX1,2,4.p2	AK211361|Mboat7|77582|membrane bound O-acyltransferase domain containing 7
mm9_v1_chr16_-_48994021_48994056	0.262821	CDX1,2,4.p2	BC052893|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117953|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117954|Dzip3|224170|DAZ interacting protein 3, zinc finger
mm9_v1_chr4_-_133101802_133101911	0.262	CDX1,2,4.p2	Y15522|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	X81443|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	BC011253|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012777|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK032673|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012321|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK146323|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr1_-_184271729_184271762	0.261966	CDX1,2,4.p2	BC094542|Fbxo28|67948|F-box protein 28	NM_175127|Fbxo28|67948|F-box protein 28	AK076211|Fbxo28|67948|F-box protein 28	AK077653|Fbxo28|67948|F-box protein 28
mm9_v1_chr13_-_36209100_36209228	0.2617	CDX1,2,4.p2	BC080772|Lyrm4|380840|LYR motif containing 4	BC034664|Lyrm4|380840|LYR motif containing 4	AK050553|Lyrm4|380840|LYR motif containing 4	NM_201358|Lyrm4|380840|LYR motif containing 4
mm9_v1_chr9_+_79914685_79914721	0.261336	CDX1,2,4.p2	AK053904|Senp6|215351|SUMO/sentrin specific peptidase 6	NM_146003|Senp6|215351|SUMO/sentrin specific peptidase 6
mm9_v1_chr15_+_76157816_76157892	0.260868	CDX1,2,4.p2	AK089890|Exosc4|109075|exosome component 4	NM_175399|Exosc4|109075|exosome component 4	AK167629|Exosc4|109075|exosome component 4	AK083308|Exosc4|109075|exosome component 4	BC012277|Exosc4|109075|exosome component 4
mm9_v1_chrM_+_15355_15407	0.260242	CDX1,2,4.p2	
mm9_v1_chr1_-_180267841_180267909	0.25975	CDX1,2,4.p2	AF073992|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159956|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK037517|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK168657|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK029944|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159084|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr17_+_22498419_22498488	0.259249	CDX1,2,4.p2	NM_145484|Zfp758|224598|zinc finger protein 758	BC037455|Zfp758|224598|zinc finger protein 758	AK028301|Zfp758|224598|zinc finger protein 758	BC022203|Zfp758|224598|zinc finger protein 758	BC056632|Zfp758|224598|zinc finger protein 758	BC021442|Zfp758|224598|zinc finger protein 758
mm9_v1_chr15_+_82000246_82000509	0.258486	CDX1,2,4.p2	BC023333|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr4_-_129419450_129419570	0.258129	CDX1,2,4.p2	BC002051|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17046|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK146815|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	U17961|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK150687|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK152084|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	NM_011317|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK044927|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK050520|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1	AK137122|Khdrbs1|20218|KH domain containing, RNA binding, signal transduction associated 1
mm9_v1_chr15_-_103085703_103085858	0.257589	CDX1,2,4.p2	BC062171|Nfe2|18022|nuclear factor, erythroid derived 2	NM_008685|Nfe2|18022|nuclear factor, erythroid derived 2	L09600|Nfe2|18022|nuclear factor, erythroid derived 2
mm9_v1_chr11_-_53520811_53520848	0.257442	CDX1,2,4.p2	BC002033|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK018001|Rad50|19360|RAD50 homolog (S. cerevisiae)	AK037641|Rad50|19360|RAD50 homolog (S. cerevisiae)	NM_009012|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr16_+_36828464_36828529	0.25695	CDX1,2,4.p2	NM_177128|Iqcb1|320299|IQ calmodulin-binding motif containing 1	BC029084|Iqcb1|320299|IQ calmodulin-binding motif containing 1	AK078554|Iqcb1|320299|IQ calmodulin-binding motif containing 1	AK165220|Iqcb1|320299|IQ calmodulin-binding motif containing 1
mm9_v1_chr9_+_120019498_120019516	0.256914	CDX1,2,4.p2	AK078385|Slc25a38|208638|solute carrier family 25, member 38	BC010801|Slc25a38|208638|solute carrier family 25, member 38	NM_144793|Slc25a38|208638|solute carrier family 25, member 38
mm9_v1_chr7_+_16760712_16760833	0.256745	CDX1,2,4.p2	NM_008627|Meis3|17537|Meis homeobox 3	AK083907|Meis3|17537|Meis homeobox 3	AK155364|Meis3|17537|Meis homeobox 3	AK142345|Meis3|17537|Meis homeobox 3	AK134758|Meis3|17537|Meis homeobox 3	BC003762|Meis3|17537|Meis homeobox 3	U57344|Meis3|17537|Meis homeobox 3	BC117532|Meis3|17537|Meis homeobox 3	BC118513|Meis3|17537|Meis homeobox 3
mm9_v1_chr2_-_50152180_50152256	0.256642	CDX1,2,4.p2	BC002253|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	NM_133839|Mmadhc|109129|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm9_v1_chr15_-_90764873_90764944	0.256505	CDX1,2,4.p2	AK052821|Kif21a|16564|kinesin family member 21A	AK047208|Kif21a|16564|kinesin family member 21A
mm9_v1_chr17_-_32351597_32351614	0.25564	CDX1,2,4.p2	
mm9_v1_chr5_-_144775583_144775788	0.25535	CDX1,2,4.p2	AK213761|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	BC048077|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	NM_177682|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK090008|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK171671|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK172392|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK146704|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK150793|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152328|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152576|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK153160|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK164888|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
mm9_v1_chr18_+_80403581_80403591	0.254438	CDX1,2,4.p2	BC025053|Txnl4a|27366|thioredoxin-like 4A	NM_178604|Txnl4a|27366|thioredoxin-like 4A	AK171121|Txnl4a|27366|thioredoxin-like 4A
mm9_v1_chr2_+_92025639_92025639	0.2538	CDX1,2,4.p2	AK037174|Phf21a|192285|PHD finger protein 21A	NM_001109691|Phf21a|192285|PHD finger protein 21A
mm9_v1_chr2_-_144376513_144376606	0.253625	CDX1,2,4.p2	AF039563|Rbbp9|26450|retinoblastoma binding protein 9	BC050201|Rbbp9|26450|retinoblastoma binding protein 9	AK017606|Rbbp9|26450|retinoblastoma binding protein 9	BC011107|Rbbp9|26450|retinoblastoma binding protein 9	BC147814|Rbbp9|26450|retinoblastoma binding protein 9	BC147815|Rbbp9|26450|retinoblastoma binding protein 9	AK076944|Rbbp9|26450|retinoblastoma binding protein 9	NM_015754|Rbbp9|26450|retinoblastoma binding protein 9
mm9_v1_chr3_-_81779636_81779675	0.253049	CDX1,2,4.p2	U24493|Tdo2|56720|tryptophan 2,3-dioxygenase	BC018390|Tdo2|56720|tryptophan 2,3-dioxygenase	NM_019911|Tdo2|56720|tryptophan 2,3-dioxygenase	AK132271|Tdo2|56720|tryptophan 2,3-dioxygenase
mm9_v1_chr12_-_52849709_52849723	0.253004	CDX1,2,4.p2	AK077185|Hectd1|207304|HECT domain containing 1
mm9_v1_chr19_-_44210311_44210378	0.252907	CDX1,2,4.p2	BC037640|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	BC027553|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK012163|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK139654|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	NM_001081077|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)
mm9_v1_chr8_+_71626352_71626466	0.252582	CDX1,2,4.p2	AK187885|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK196120|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205248|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207339|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK207413|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209086|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK210829|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr14_-_109313298_109313300	0.251549	CDX1,2,4.p2	AK144290|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr1_-_194681914_194681945	0.251433	CDX1,2,4.p2	BC060251|Sertad4|214791|SERTA domain containing 4	NM_198247|Sertad4|214791|SERTA domain containing 4
mm9_v1_chr3_-_115832278_115832299	0.250959	CDX1,2,4.p2	CT010373|Vcam1|22329|vascular cell adhesion molecule 1	X67783|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chrM_+_13320_13486	0.250846	CDX1,2,4.p2	
mm9_v1_chr8_+_24145593_24145599	0.25075	CDX1,2,4.p2	M84756|Ank1|11733|ankyrin 1, erythroid	BC079910|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr15_+_102300902_102300971	0.250484	CDX1,2,4.p2	AK169268|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr12_-_88813216_88813284	0.249089	CDX1,2,4.p2	AK167695|Snw1|66354|SNW domain containing 1	AX775977|Snw1|66354|SNW domain containing 1	AX775979|Snw1|66354|SNW domain containing 1	AK166163|Snw1|66354|SNW domain containing 1	NM_025507|Snw1|66354|SNW domain containing 1
mm9_v1_chr17_+_10512744_10512791	0.248657	CDX1,2,4.p2	AK012373|B930003M22Rik|100526796|RIKEN cDNA B930003M22 gene	AK046926|B930003M22Rik|100526796|RIKEN cDNA B930003M22 gene
mm9_v1_chr13_-_21872421_21872495	0.247693	CDX1,2,4.p2	BC114579|Hist1h1b|56702|histone cluster 1, H1b	NM_020034|Hist1h1b|56702|histone cluster 1, H1b	AK020117|Hist1h1b|56702|histone cluster 1, H1b
mm9_v1_chr4_-_140695648_140695720	0.247569	CDX1,2,4.p2	BC066992|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171420|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK027934|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK145912|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	AK171702|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_001025608|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed	NM_174996|D4Ertd22e|213491|DNA segment, Chr 4, ERATO Doi 22, expressed
mm9_v1_chr5_+_145888588_145888809	0.245854	CDX1,2,4.p2	AK192837|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B
mm9_v1_chr5_-_135727086_135727099	0.244863	CDX1,2,4.p2	AK021164|Fzd9|14371|frizzled homolog 9 (Drosophila)
mm9_v1_chr6_-_145024487_145024530	0.244751	CDX1,2,4.p2	AK167368|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr17_-_45570469_45570504	0.243952	CDX1,2,4.p2	BC003893|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK150562|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK150861|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK146892|Cdc5l|71702|cell division cycle 5-like (S. pombe)	AK172950|Cdc5l|71702|cell division cycle 5-like (S. pombe)
mm9_v1_chr2_-_26332482_26332729	0.243825	CDX1,2,4.p2	L02613|Notch1|18128|Notch gene homolog 1 (Drosophila)	AB101624|Notch1|18128|Notch gene homolog 1 (Drosophila)
mm9_v1_chr1_-_167523348_167523717	0.243422	CDX1,2,4.p2	AK188720|Mpzl1|68481|myelin protein zero-like 1	AK198363|Mpzl1|68481|myelin protein zero-like 1	AK200888|Mpzl1|68481|myelin protein zero-like 1	AK206772|Mpzl1|68481|myelin protein zero-like 1	AK210071|Mpzl1|68481|myelin protein zero-like 1	AK214871|Mpzl1|68481|myelin protein zero-like 1	AK215062|Mpzl1|68481|myelin protein zero-like 1	AK218959|Mpzl1|68481|myelin protein zero-like 1	AK003513|Mpzl1|68481|myelin protein zero-like 1
mm9_v1_chr10_-_4707228_4707322	0.24307	CDX1,2,4.p2	BC089511|Vip|22353|vasoactive intestinal polypeptide	AK018599|Vip|22353|vasoactive intestinal polypeptide	NM_011702|Vip|22353|vasoactive intestinal polypeptide
mm9_v1_chr5_+_123592177_123592311	0.242319	CDX1,2,4.p2	AK141316|Setd1b|208043|SET domain containing 1B
mm9_v1_chr8_-_9976197_9976322	0.241836	CDX1,2,4.p2	AK083353|Lig4|319583|ligase IV, DNA, ATP-dependent	AK148081|Lig4|319583|ligase IV, DNA, ATP-dependent	NM_176953|Lig4|319583|ligase IV, DNA, ATP-dependent
mm9_v1_chr4_-_41688124_41688233	0.241773	CDX1,2,4.p2	AF226605|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390764|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390765|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390766|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AY390768|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AF030198|Sigmar1|18391|sigma non-opioid intracellular receptor 1	BC019930|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK159886|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK002718|Sigmar1|18391|sigma non-opioid intracellular receptor 1	BC002000|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AF004927|Sigmar1|18391|sigma non-opioid intracellular receptor 1	NM_011014|Sigmar1|18391|sigma non-opioid intracellular receptor 1	AK154300|Sigmar1|18391|sigma non-opioid intracellular receptor 1
mm9_v1_chr19_-_60302571_60302605	0.241275	CDX1,2,4.p2	BC056640|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK011404|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK044853|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	AK075914|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	NM_029648|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed	BC048505|D19Ertd737e|76539|DNA segment, Chr 19, ERATO Doi 737, expressed
mm9_v1_chr4_-_74924159_74924210	0.241018	CDX1,2,4.p2	AK003640|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	BC022621|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	NM_025849|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	AK013937|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene
mm9_v1_chr15_-_99705812_99705887	0.240264	CDX1,2,4.p2	BC031490|Lima1|65970|LIM domain and actin binding 1	AK028311|Lima1|65970|LIM domain and actin binding 1	AK049350|Lima1|65970|LIM domain and actin binding 1	AF307845|Lima1|65970|LIM domain and actin binding 1	AK078959|Lima1|65970|LIM domain and actin binding 1	NM_001113545|Lima1|65970|LIM domain and actin binding 1
mm9_v1_chr2_-_169956719_169956719	0.240011	CDX1,2,4.p2	AK156475|Zfp217|228913|zinc finger protein 217	NM_001033299|Zfp217|228913|zinc finger protein 217
mm9_v1_chr19_-_10137491_10137508	0.239412	CDX1,2,4.p2	
mm9_v1_chr5_+_99283433_99283479	0.239142	CDX1,2,4.p2	AK035299|Bmp3|110075|bone morphogenetic protein 3	AK040389|Bmp3|110075|bone morphogenetic protein 3	NM_173404|Bmp3|110075|bone morphogenetic protein 3	AK035393|Bmp3|110075|bone morphogenetic protein 3	AK037225|Bmp3|110075|bone morphogenetic protein 3
mm9_v1_chr2_-_34609888_34609977	0.238105	CDX1,2,4.p2	BC048847|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	AK150026|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	AK165047|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr3_+_84781329_84781358	0.237981	CDX1,2,4.p2	
mm9_v1_chr4_+_134420419_134420535	0.237625	CDX1,2,4.p2	BC145805|Rhd|19746|Rh blood group, D antigen	NM_011270|Rhd|19746|Rh blood group, D antigen	AF057524|Rhd|19746|Rh blood group, D antigen	AK089642|Rhd|19746|Rh blood group, D antigen	AF069311|Rhd|19746|Rh blood group, D antigen	AK079335|Rhd|19746|Rh blood group, D antigen	AK171641|Rhd|19746|Rh blood group, D antigen	AB015189|Rhd|19746|Rh blood group, D antigen	AB015190|Rhd|19746|Rh blood group, D antigen	AF047827|Rhd|19746|Rh blood group, D antigen	AK157850|Rhd|19746|Rh blood group, D antigen	AF012430|Rhd|19746|Rh blood group, D antigen
mm9_v1_chr16_+_7409879_7410026	0.2373	CDX1,2,4.p2	AK034297|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr15_+_101974792_101974939	0.237037	CDX1,2,4.p2	X81584|Igfbp6|16012|insulin-like growth factor binding protein 6	BC012723|Igfbp6|16012|insulin-like growth factor binding protein 6	AK157982|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr8_+_24249481_24249576	0.236791	CDX1,2,4.p2	U73972|Ank1|11733|ankyrin 1, erythroid	BC061219|Ank1|11733|ankyrin 1, erythroid	AK134267|Ank1|11733|ankyrin 1, erythroid
mm9_v1_chr5_-_84846256_84846332	0.236626	CDX1,2,4.p2	AK089143|Epha5|13839|Eph receptor A5
mm9_v1_chr4_-_136891931_136891995	0.235124	CDX1,2,4.p2	AK213611|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	M79301|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L11318|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)	L78075|Cdc42|12540|cell division cycle 42 homolog (S. cerevisiae)
mm9_v1_chr1_+_58768329_58768403	0.234969	CDX1,2,4.p2	AK009498|Cflar|12633|CASP8 and FADD-like apoptosis regulator	AK152515|Cflar|12633|CASP8 and FADD-like apoptosis regulator	U97076|Cflar|12633|CASP8 and FADD-like apoptosis regulator
mm9_v1_chr11_+_43247252_43247280	0.234323	CDX1,2,4.p2	BC082780|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC025870|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK046262|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK029117|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK049178|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC060954|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr2_+_132079092_132079159	0.233632	CDX1,2,4.p2	
mm9_v1_chr10_-_60610398_60610452	0.232407	CDX1,2,4.p2	NM_009163|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr13_+_104899869_104899979	0.231656	CDX1,2,4.p2	BC017611|Sgtb|218544|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	NM_144838|Sgtb|218544|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	AK082080|Sgtb|218544|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm9_v1_chr1_-_72258684_72258880	0.231235	CDX1,2,4.p2	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chr13_+_14705508_14705551	0.230506	CDX1,2,4.p2	AK136115|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	NM_008944|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK151883|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK152862|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK167752|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK012990|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK035578|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK154011|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AK012119|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	BC026768|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2	AF099733|Psma2|19166|proteasome (prosome, macropain) subunit, alpha type 2
mm9_v1_chr4_+_135728188_135728308	0.229847	CDX1,2,4.p2	AK087452|E2f2|242705|E2F transcription factor 2	NM_177733|E2f2|242705|E2F transcription factor 2
mm9_v1_chr7_+_30880094_30880209	0.229594	CDX1,2,4.p2	BC085180|Zfp260|26466|zinc finger protein 260	NM_011981|Zfp260|26466|zinc finger protein 260	AK156219|Zfp260|26466|zinc finger protein 260
mm9_v1_chr4_+_21654837_21654873	0.229478	CDX1,2,4.p2	AK037957|Ccnc|51813|cyclin C	NM_001122982|Ccnc|51813|cyclin C	NM_016746|Ccnc|51813|cyclin C	AK135472|Ccnc|51813|cyclin C	U62638|Ccnc|51813|cyclin C	BC100396|Ccnc|51813|cyclin C
mm9_v1_chrX_-_103680566_103680612	0.229374	CDX1,2,4.p2	BC085176|Fndc3c1|333564|fibronectin type III domain containing 3C1	BC076625|Fndc3c1|333564|fibronectin type III domain containing 3C1	NM_001007580|Fndc3c1|333564|fibronectin type III domain containing 3C1	DQ192038|Fndc3c1|333564|fibronectin type III domain containing 3C1
mm9_v1_chr2_-_52414072_52414117	0.229093	CDX1,2,4.p2	AK043850|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK079616|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	AK038633|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit	NM_146123|Cacnb4|12298|calcium channel, voltage-dependent, beta 4 subunit
mm9_v1_chr9_+_79914751_79914905	0.22856	CDX1,2,4.p2	AK129219|Senp6|215351|SUMO/sentrin specific peptidase 6	BC061480|Senp6|215351|SUMO/sentrin specific peptidase 6	BC052718|Senp6|215351|SUMO/sentrin specific peptidase 6
mm9_v1_chr11_-_43239663_43239784	0.228466	CDX1,2,4.p2	NM_001131054|Pttg1|30939|pituitary tumor-transforming gene 1	BC023324|Pttg1|30939|pituitary tumor-transforming gene 1
mm9_v1_chr5_-_54098762_54098942	0.227804	CDX1,2,4.p2	BC020534|Cckar|12425|cholecystokinin A receptor	AK143895|Cckar|12425|cholecystokinin A receptor	AK004730|Cckar|12425|cholecystokinin A receptor	AK146738|Cckar|12425|cholecystokinin A receptor	AK147052|Cckar|12425|cholecystokinin A receptor	NM_009827|Cckar|12425|cholecystokinin A receptor
mm9_v1_chr6_+_146837012_146837178	0.227196	CDX1,2,4.p2	NM_001170433|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	NM_026221|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	AK146575|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	BC072603|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	AK154482|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	AK173133|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)	BC035209|Ppfibp1|67533|PTPRF interacting protein, binding protein 1 (liprin beta 1)
mm9_v1_chr16_+_17331463_17331501	0.225246	CDX1,2,4.p2	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr7_+_28954717_28954778	0.224342	CDX1,2,4.p2	BC092274|Fbl|14113|fibrillarin	BC003813|Fbl|14113|fibrillarin	NM_007991|Fbl|14113|fibrillarin	AK012620|Fbl|14113|fibrillarin	AK146328|Fbl|14113|fibrillarin	Z22593|Fbl|14113|fibrillarin
mm9_v1_chr8_+_125914690_125914738	0.223909	CDX1,2,4.p2	AK177952|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK179328|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK186829|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr10_-_106560683_106560723	0.223792	CDX1,2,4.p2	BC113198|Acss3|380660|acyl-CoA synthetase short-chain family member 3	AK163897|Acss3|380660|acyl-CoA synthetase short-chain family member 3	NM_001142804|Acss3|380660|acyl-CoA synthetase short-chain family member 3	NM_198636|Acss3|380660|acyl-CoA synthetase short-chain family member 3	AK033376|Acss3|380660|acyl-CoA synthetase short-chain family member 3
mm9_v1_chr5_-_137755406_137755631	0.223084	CDX1,2,4.p2	AK146823|Trip6|22051|thyroid hormone receptor interactor 6	AK159387|Trip6|22051|thyroid hormone receptor interactor 6	AF116823|Trip6|22051|thyroid hormone receptor interactor 6	AK010435|Trip6|22051|thyroid hormone receptor interactor 6	NM_011639|Trip6|22051|thyroid hormone receptor interactor 6	AK166024|Trip6|22051|thyroid hormone receptor interactor 6
mm9_v1_chrM_-_622_663	0.22304	CDX1,2,4.p2	
mm9_v1_chr11_-_69495203_69495445	0.222868	CDX1,2,4.p2	AY008764|Senp3|80886|SUMO/sentrin specific peptidase 3	BC037014|Senp3|80886|SUMO/sentrin specific peptidase 3	AK045071|Senp3|80886|SUMO/sentrin specific peptidase 3
mm9_v1_chr5_-_52957518_52957569	0.221963	CDX1,2,4.p2	NM_144945|Lgi2|246316|leucine-rich repeat LGI family, member 2	AJ487515|Lgi2|246316|leucine-rich repeat LGI family, member 2
mm9_v1_chr15_-_83425479_83425610	0.22181	CDX1,2,4.p2	AM690756|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	BC055368|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK084879|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK134345|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK150116|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	AK143496|Ttll12|223723|tubulin tyrosine ligase-like family, member 12	NM_183017|Ttll12|223723|tubulin tyrosine ligase-like family, member 12
mm9_v1_chr9_+_122026424_122026492	0.221451	CDX1,2,4.p2	BC094658|Snrk|20623|SNF related kinase	BC020189|Snrk|20623|SNF related kinase
mm9_v1_chr4_+_149022266_149022381	0.221352	CDX1,2,4.p2	
mm9_v1_chr17_+_79315805_79315867	0.220659	CDX1,2,4.p2	NM_001177402|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	NM_001177403|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	AK003199|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	AK027910|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene
mm9_v1_chr5_-_21290925_21290949	0.220244	CDX1,2,4.p2	U53208|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2	AK161347|Dnajc2|22791|DnaJ (Hsp40) homolog, subfamily C, member 2
mm9_v1_chr3_-_41546402_41546435	0.219865	CDX1,2,4.p2	BC043136|Sclt1|67161|sodium channel and clathrin linker 1	BC060271|Sclt1|67161|sodium channel and clathrin linker 1	AK083894|Sclt1|67161|sodium channel and clathrin linker 1	AK016469|Sclt1|67161|sodium channel and clathrin linker 1	NM_001081411|Sclt1|67161|sodium channel and clathrin linker 1
mm9_v1_chr1_-_170362278_170362289	0.219546	CDX1,2,4.p2	AY157976|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr16_+_43890014_43890036	0.218589	CDX1,2,4.p2	NM_027801|2610015P09Rik|212153|RIKEN cDNA 2610015P09 gene
mm9_v1_chr11_-_98862163_98862321	0.217629	CDX1,2,4.p2	AK138079|Top2a|21973|topoisomerase (DNA) II alpha	BC094326|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr1_-_94348610_94348663	0.217568	CDX1,2,4.p2	AK203226|Ndufa10|67273|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10
mm9_v1_chr6_-_119367498_119367553	0.217507	CDX1,2,4.p2	BC064109|Adipor2|68465|adiponectin receptor 2	AY424291|Adipor2|68465|adiponectin receptor 2	BC024094|Adipor2|68465|adiponectin receptor 2	NM_197985|Adipor2|68465|adiponectin receptor 2	AK046591|Adipor2|68465|adiponectin receptor 2	AK134787|Adipor2|68465|adiponectin receptor 2	AK160534|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr5_+_142877419_142877473	0.216727	CDX1,2,4.p2	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr12_+_75065534_75065545	0.216415	CDX1,2,4.p2	BC030456|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1
mm9_v1_chr7_+_140175699_140175731	0.216307	CDX1,2,4.p2	AJ250693|Zranb1|360216|zinc finger, RAN-binding domain containing 1
mm9_v1_chr12_-_71328615_71328621	0.216279	CDX1,2,4.p2	AK041189|Pygl|110095|liver glycogen phosphorylase	AK140321|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr17_-_37095420_37095443	0.216139	CDX1,2,4.p2	AK005976|Znrd1|66136|zinc ribbon domain containing, 1	AK019152|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chr17_-_26232411_26232456	0.215779	CDX1,2,4.p2	AF153451|Nme4|56520|non-metastatic cells 4, protein expressed in	NM_019731|Nme4|56520|non-metastatic cells 4, protein expressed in	AK011573|Nme4|56520|non-metastatic cells 4, protein expressed in	AK017724|Nme4|56520|non-metastatic cells 4, protein expressed in	AF288690|Nme4|56520|non-metastatic cells 4, protein expressed in	BC027277|Nme4|56520|non-metastatic cells 4, protein expressed in	AK012805|Nme4|56520|non-metastatic cells 4, protein expressed in
mm9_v1_chr10_+_111409750_111409849	0.215735	CDX1,2,4.p2	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr1_+_62749850_62750115	0.214924	CDX1,2,4.p2	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr3_-_52821116_52821157	0.214794	CDX1,2,4.p2	AB093286|Cog6|67542|component of oligomeric golgi complex 6	AK048986|Cog6|67542|component of oligomeric golgi complex 6	AK153320|Cog6|67542|component of oligomeric golgi complex 6	AK031149|Cog6|67542|component of oligomeric golgi complex 6	AK045223|Cog6|67542|component of oligomeric golgi complex 6	NM_026225|Cog6|67542|component of oligomeric golgi complex 6	AK016663|Cog6|67542|component of oligomeric golgi complex 6
mm9_v1_chr15_+_86025174_86025178	0.214411	CDX1,2,4.p2	
mm9_v1_chr14_+_55308846_55308961	0.213576	CDX1,2,4.p2	
mm9_v1_chr2_-_106814482_106814618	0.213389	CDX1,2,4.p2	BC054106|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK038273|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK134965|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK165082|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	AK012215|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene	NM_001025102|2700007P21Rik|212772|RIKEN cDNA 2700007P21 gene
mm9_v1_chr9_-_15084310_15084404	0.212408	CDX1,2,4.p2	BC020185|Med17|234959|mediator complex subunit 17	NM_144933|Med17|234959|mediator complex subunit 17	AK033151|Med17|234959|mediator complex subunit 17	AK142033|Med17|234959|mediator complex subunit 17	AK038451|Med17|234959|mediator complex subunit 17	AK049112|Med17|234959|mediator complex subunit 17	AK151377|Med17|234959|mediator complex subunit 17
mm9_v1_chr15_+_33012863_33012908	0.212143	CDX1,2,4.p2	NM_018755|Pgcp|54381|plasma glutamate carboxypeptidase	NM_176073|Pgcp|54381|plasma glutamate carboxypeptidase	AK135096|Pgcp|54381|plasma glutamate carboxypeptidase	BC010977|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr7_-_106387077_106387128	0.211808	CDX1,2,4.p2	AY157609|Mogat2|233549|monoacylglycerol O-acyltransferase 2	AK049560|Mogat2|233549|monoacylglycerol O-acyltransferase 2	BC052831|Mogat2|233549|monoacylglycerol O-acyltransferase 2	NM_177448|Mogat2|233549|monoacylglycerol O-acyltransferase 2	AK133854|Mogat2|233549|monoacylglycerol O-acyltransferase 2
mm9_v1_chr11_-_60624733_60624766	0.210923	CDX1,2,4.p2	NM_009171|Shmt1|20425|serine hydroxymethyltransferase 1 (soluble)
mm9_v1_chr2_+_34628721_34628809	0.210361	CDX1,2,4.p2	AK219322|Hspa5|14828|heat shock protein 5
mm9_v1_chr16_-_32165509_32165642	0.210204	CDX1,2,4.p2	AK084858|Lrrc33|224109|leucine rich repeat containing 33	AK088770|Lrrc33|224109|leucine rich repeat containing 33	AK128897|Lrrc33|224109|leucine rich repeat containing 33	NM_146069|Lrrc33|224109|leucine rich repeat containing 33	BC027411|Lrrc33|224109|leucine rich repeat containing 33	AK167934|Lrrc33|224109|leucine rich repeat containing 33	AK042502|Lrrc33|224109|leucine rich repeat containing 33
mm9_v1_chr5_-_92497375_92497432	0.209719	CDX1,2,4.p2	AK200302|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr6_-_51416921_51416984	0.209263	CDX1,2,4.p2	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr2_-_84614976_84615011	0.208686	CDX1,2,4.p2	AK165744|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1	AK144292|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm9_v1_chr2_-_163462584_163462669	0.208487	CDX1,2,4.p2	AK128955|Serinc3|26943|serine incorporator 3
mm9_v1_chr14_-_52780511_52780625	0.208111	CDX1,2,4.p2	AK082901|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)
mm9_v1_chr8_+_119467267_119467410	0.207576	CDX1,2,4.p2	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr9_+_114640266_114640368	0.207517	CDX1,2,4.p2	AK171394|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152723|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152817|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK012941|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK150775|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK151092|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK151431|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK152448|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK153092|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	NM_026036|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK170905|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK159735|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK167854|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK128960|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK154481|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK167499|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK030885|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK145743|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	BC027248|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK165948|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6	AK159439|Cmtm6|67213|CKLF-like MARVEL transmembrane domain containing 6
mm9_v1_chr3_+_137806778_137806871	0.20748	CDX1,2,4.p2	AK008262|2010015P12Rik|70189|RIKEN cDNA 2010015P12 gene
mm9_v1_chr12_+_111805938_111806039	0.20553	CDX1,2,4.p2	AK047089|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK178752|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK196801|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK201559|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK211769|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr8_+_42416046_42416071	0.205464	CDX1,2,4.p2	AK040482|Pcm1|18536|pericentriolar material 1
mm9_v1_chr2_-_33286793_33286890	0.205176	CDX1,2,4.p2	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr2_-_34726422_34726488	0.204981	CDX1,2,4.p2	AK220321|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK029067|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK005335|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK011026|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK032992|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK078419|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK145587|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK139644|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	AK148284|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	NM_080554|Psmd5|66998|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm9_v1_chr1_-_170085798_170085873	0.204892	CDX1,2,4.p2	AK080184|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK032161|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK043495|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK085198|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr5_+_130535973_130536156	0.204786	CDX1,2,4.p2	
mm9_v1_chr2_+_158450623_158450686	0.204292	CDX1,2,4.p2	AK046312|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK142980|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	NM_175419|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	AK046584|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC028806|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC052039|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)	BC037522|Actr5|109275|ARP5 actin-related protein 5 homolog (yeast)
mm9_v1_chrX_+_9829439_9829558	0.204216	CDX1,2,4.p2	AK050930|Otc|18416|ornithine transcarbamylase	NM_008769|Otc|18416|ornithine transcarbamylase	BC024893|Otc|18416|ornithine transcarbamylase	M17030|Otc|18416|ornithine transcarbamylase
mm9_v1_chr2_+_3630729_3630774	0.203404	CDX1,2,4.p2	AK032875|Fam107b|66540|family with sequence similarity 107, member B	NM_025626|Fam107b|66540|family with sequence similarity 107, member B	AK013932|Fam107b|66540|family with sequence similarity 107, member B	AK168759|Fam107b|66540|family with sequence similarity 107, member B	BC021353|Fam107b|66540|family with sequence similarity 107, member B
mm9_v1_chr10_-_12912880_12912990	0.20312	CDX1,2,4.p2	AK011491|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC069962|Ltv1|353258|LTV1 homolog (S. cerevisiae)	BC067062|Ltv1|353258|LTV1 homolog (S. cerevisiae)	NM_181470|Ltv1|353258|LTV1 homolog (S. cerevisiae)
mm9_v1_chrM_+_9875_9905	0.202961	CDX1,2,4.p2	AK140187|ND4L|17720|NADH dehydrogenase subunit 4L	AK157367|ND4L|17720|NADH dehydrogenase subunit 4L	AK144853|ND4L|17720|NADH dehydrogenase subunit 4L	AK153747|ND4L|17720|NADH dehydrogenase subunit 4L
mm9_v1_chr7_+_31017305_31017379	0.202529	CDX1,2,4.p2	AK012635|Polr2i|69920|polymerase (RNA) II (DNA directed) polypeptide I	AB221537|Polr2i|69920|polymerase (RNA) II (DNA directed) polypeptide I
mm9_v1_chr4_+_132754604_132754753	0.202485	CDX1,2,4.p2	
mm9_v1_chr10_-_78560301_78560348	0.202214	CDX1,2,4.p2	BC082302|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	AK148309|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	NM_001004362|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene
mm9_v1_chr7_-_149838254_149838314	0.201752	CDX1,2,4.p2	AK146531|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr11_+_96891242_96891268	0.20174	CDX1,2,4.p2	NM_146027|Scrn2|217140|secernin 2
mm9_v1_chr2_+_163428044_163428072	0.201601	CDX1,2,4.p2	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr5_+_32761332_32761346	0.20092	CDX1,2,4.p2	NM_172707|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166416|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr4_+_140258090_140258179	0.200868	CDX1,2,4.p2	AK186216|Rcc2|108911|regulator of chromosome condensation 2	AK129370|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr12_-_82695944_82695966	0.200681	CDX1,2,4.p2	BC013096|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	NM_027213|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	AK171784|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)
mm9_v1_chr11_-_69182814_69182823	0.200032	CDX1,2,4.p2	AF020311|Chd3|216848|chromodomain helicase DNA binding protein 3
mm9_v1_chr18_+_31948788_31948829	0.198883	CDX1,2,4.p2	AK011600|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	NM_027002|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	AK009093|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	BC004810|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D	NM_027101|Polr2d|69241|polymerase (RNA) II (DNA directed) polypeptide D
mm9_v1_chr4_+_130219281_130219296	0.198509	CDX1,2,4.p2	AK163977|Pum1|80912|pumilio 1 (Drosophila)	AK122205|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr10_+_43988192_43988362	0.198017	CDX1,2,4.p2	BC002166|Atg5|11793|autophagy-related 5 (yeast)
mm9_v1_chr10_+_128258826_128258995	0.197557	CDX1,2,4.p2	NM_025364|Sarnp|66118|SAP domain containing ribonucleoprotein	AK146248|Sarnp|66118|SAP domain containing ribonucleoprotein	AK018773|Sarnp|66118|SAP domain containing ribonucleoprotein	BC157909|Sarnp|66118|SAP domain containing ribonucleoprotein	BC158023|Sarnp|66118|SAP domain containing ribonucleoprotein	BC172063|Sarnp|66118|SAP domain containing ribonucleoprotein	AK003453|Sarnp|66118|SAP domain containing ribonucleoprotein	AK088266|Sarnp|66118|SAP domain containing ribonucleoprotein	BC027510|Sarnp|66118|SAP domain containing ribonucleoprotein	BC094393|Sarnp|66118|SAP domain containing ribonucleoprotein	AK212934|Sarnp|66118|SAP domain containing ribonucleoprotein
mm9_v1_chr11_+_75578548_75578573	0.197269	CDX1,2,4.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr4_-_98049833_98049960	0.197089	CDX1,2,4.p2	AK216092|Tm2d1|94043|TM2 domain containing 1	AF353993|Tm2d1|94043|TM2 domain containing 1	AK009511|Tm2d1|94043|TM2 domain containing 1	BC089492|Tm2d1|94043|TM2 domain containing 1	NM_053157|Tm2d1|94043|TM2 domain containing 1
mm9_v1_chr9_+_70526702_70526924	0.196563	CDX1,2,4.p2	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr2_+_90780646_90780662	0.196546	CDX1,2,4.p2	AK143698|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr2_+_91366966_91366992	0.196544	CDX1,2,4.p2	AK014169|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr7_+_63185457_63185630	0.196481	CDX1,2,4.p2	AK195390|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1	AK052509|Cyfip1|20430|cytoplasmic FMR1 interacting protein 1
mm9_v1_chr8_-_87368085_87368109	0.196322	CDX1,2,4.p2	AK210927|Calr|12317|calreticulin	AK217751|Calr|12317|calreticulin	AK181613|Calr|12317|calreticulin	AK183058|Calr|12317|calreticulin	AK183816|Calr|12317|calreticulin	AK184371|Calr|12317|calreticulin	AK184686|Calr|12317|calreticulin	AK186273|Calr|12317|calreticulin	AK186947|Calr|12317|calreticulin	AK187210|Calr|12317|calreticulin	AK187443|Calr|12317|calreticulin	AK187510|Calr|12317|calreticulin	AK188047|Calr|12317|calreticulin	AK188305|Calr|12317|calreticulin	AK205755|Calr|12317|calreticulin	AK206260|Calr|12317|calreticulin	AK206418|Calr|12317|calreticulin	AK206809|Calr|12317|calreticulin	AK207019|Calr|12317|calreticulin	AK207064|Calr|12317|calreticulin	AK207276|Calr|12317|calreticulin	AK207415|Calr|12317|calreticulin	AK207893|Calr|12317|calreticulin	AK208355|Calr|12317|calreticulin	AK208453|Calr|12317|calreticulin	AK208679|Calr|12317|calreticulin	AK208769|Calr|12317|calreticulin	AK209113|Calr|12317|calreticulin	AK209502|Calr|12317|calreticulin	AK210608|Calr|12317|calreticulin	AK210883|Calr|12317|calreticulin	AK211056|Calr|12317|calreticulin	AK211317|Calr|12317|calreticulin	AK211600|Calr|12317|calreticulin	AK211889|Calr|12317|calreticulin	AK212276|Calr|12317|calreticulin	AK212292|Calr|12317|calreticulin	AK214276|Calr|12317|calreticulin	AK214299|Calr|12317|calreticulin	AK214334|Calr|12317|calreticulin	AK214449|Calr|12317|calreticulin	AK214495|Calr|12317|calreticulin	AK214677|Calr|12317|calreticulin	AK215160|Calr|12317|calreticulin	AK215734|Calr|12317|calreticulin	AK216261|Calr|12317|calreticulin	AK216536|Calr|12317|calreticulin	AK216544|Calr|12317|calreticulin	AK216684|Calr|12317|calreticulin	AK217163|Calr|12317|calreticulin	AK217244|Calr|12317|calreticulin	AK217420|Calr|12317|calreticulin	AK217671|Calr|12317|calreticulin	AK219137|Calr|12317|calreticulin	AK219275|Calr|12317|calreticulin	AK219325|Calr|12317|calreticulin	AK219643|Calr|12317|calreticulin	AK219738|Calr|12317|calreticulin	AK219919|Calr|12317|calreticulin	AK219923|Calr|12317|calreticulin	AK220075|Calr|12317|calreticulin	AK220128|Calr|12317|calreticulin
mm9_v1_chr9_-_64062342_64062398	0.196144	CDX1,2,4.p2	AK165664|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr9_-_42062436_42062522	0.196052	CDX1,2,4.p2	AK050439|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)	AK165139|Sc5d|235293|sterol-C5-desaturase (fungal ERG3, delta-5-desaturase) homolog (S. cerevisae)
mm9_v1_chr19_-_41068625_41068698	0.195535	CDX1,2,4.p2	AJ222814|Blnk|17060|B-cell linker	AK172016|Blnk|17060|B-cell linker	BC059785|Blnk|17060|B-cell linker	AK089704|Blnk|17060|B-cell linker	AF068182|Blnk|17060|B-cell linker	AB015290|Blnk|17060|B-cell linker
mm9_v1_chr5_-_110698874_110698881	0.194895	CDX1,2,4.p2	AK049246|Pgam5|72542|phosphoglycerate mutase family member 5	AK169643|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr17_-_55851857_55851925	0.194696	CDX1,2,4.p2	AK045286|Pot1b|72836|protection of telomeres 1B	AK165040|Pot1b|72836|protection of telomeres 1B	AK050727|Pot1b|72836|protection of telomeres 1B	AK013364|Pot1b|72836|protection of telomeres 1B	NM_028370|Pot1b|72836|protection of telomeres 1B
mm9_v1_chr2_+_80457201_80457422	0.194669	CDX1,2,4.p2	AF237618|Dusp19|68082|dual specificity phosphatase 19	NM_024438|Dusp19|68082|dual specificity phosphatase 19	AK010127|Dusp19|68082|dual specificity phosphatase 19	AK077871|Dusp19|68082|dual specificity phosphatase 19	AK170170|Dusp19|68082|dual specificity phosphatase 19	AK018369|Dusp19|68082|dual specificity phosphatase 19	AB051896|Dusp19|68082|dual specificity phosphatase 19	AK049927|Dusp19|68082|dual specificity phosphatase 19	AB038769|Dusp19|68082|dual specificity phosphatase 19	BC021591|Dusp19|68082|dual specificity phosphatase 19	AK083610|Dusp19|68082|dual specificity phosphatase 19
mm9_v1_chr16_+_20128178_20128320	0.194484	CDX1,2,4.p2	AK004187|Klhl24|75785|kelch-like 24 (Drosophila)
mm9_v1_chr14_+_48283430_48283453	0.194441	CDX1,2,4.p2	NM_008477|Ktn1|16709|kinectin 1	L43326|Ktn1|16709|kinectin 1
mm9_v1_chr13_+_95645581_95645581	0.194405	CDX1,2,4.p2	NM_011021|Otp|18420|orthopedia homolog (Drosophila)	Y10413|Otp|18420|orthopedia homolog (Drosophila)
mm9_v1_chr18_+_36904309_36904426	0.19413	CDX1,2,4.p2	NM_011879|Ik|24010|IK cytokine	BC006706|Ik|24010|IK cytokine	AK167238|Ik|24010|IK cytokine	BC029148|Ik|24010|IK cytokine	AK050625|Ik|24010|IK cytokine	AK029644|Ik|24010|IK cytokine	AK163766|Ik|24010|IK cytokine	AK087976|Ik|24010|IK cytokine	BC029671|Ik|24010|IK cytokine	BC029694|Ik|24010|IK cytokine	AK088908|Ik|24010|IK cytokine	AK082356|Ik|24010|IK cytokine	BC014739|Ik|24010|IK cytokine	BC026569|Ik|24010|IK cytokine	BC033356|Ik|24010|IK cytokine	AJ006130|Ik|24010|IK cytokine
mm9_v1_chr6_+_51494521_51494550	0.194087	CDX1,2,4.p2	AK028163|Snx10|71982|sorting nexin 10	NM_001127348|Snx10|71982|sorting nexin 10	NM_028035|Snx10|71982|sorting nexin 10	AK166121|Snx10|71982|sorting nexin 10
mm9_v1_chr9_+_108844100_108844145	0.193615	CDX1,2,4.p2	
mm9_v1_chr5_+_136592559_136592606	0.193612	CDX1,2,4.p2	AK158610|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	NM_011293|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	AK158644|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	BC042939|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	D85818|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J
mm9_v1_chr5_+_32761610_32761706	0.193387	CDX1,2,4.p2	AK004686|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	M27073|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK160743|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	BC046832|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK168512|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK088893|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr19_+_20567199_20567280	0.192377	CDX1,2,4.p2	AK087651|E030003E18Rik|320092|RIKEN cDNA E030003E18 gene	AK086826|E030003E18Rik|320092|RIKEN cDNA E030003E18 gene	AK018993|E030003E18Rik|320092|RIKEN cDNA E030003E18 gene
mm9_v1_chr9_-_106691395_106691543	0.192289	CDX1,2,4.p2	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr2_+_172825651_172825682	0.192143	CDX1,2,4.p2	AK146058|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK156681|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK014325|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK035278|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr11_-_101163456_101163604	0.192119	CDX1,2,4.p2	AK189474|Becn1|56208|beclin 1, autophagy related	AK178460|Becn1|56208|beclin 1, autophagy related	AK151531|Becn1|56208|beclin 1, autophagy related	BC005770|Becn1|56208|beclin 1, autophagy related	BC027738|Becn1|56208|beclin 1, autophagy related	AK028851|Becn1|56208|beclin 1, autophagy related	AK083800|Becn1|56208|beclin 1, autophagy related	AK031501|Becn1|56208|beclin 1, autophagy related	AK032176|Becn1|56208|beclin 1, autophagy related	AK050329|Becn1|56208|beclin 1, autophagy related	NM_019584|Becn1|56208|beclin 1, autophagy related	AK077392|Becn1|56208|beclin 1, autophagy related
mm9_v1_chr19_+_47142217_47142252	0.191743	CDX1,2,4.p2	AK031985|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK088953|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_177342|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK169453|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr3_-_130412360_130412367	0.190627	CDX1,2,4.p2	NM_025509|Ostc|66357|oligosaccharyltransferase complex subunit
mm9_v1_chr1_-_180260325_180260384	0.190548	CDX1,2,4.p2	
mm9_v1_chr4_+_125773958_125773995	0.190547	CDX1,2,4.p2	AK143443|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	BC026476|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	BC024543|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10
mm9_v1_chr3_+_82859422_82859482	0.19013	CDX1,2,4.p2	AK080068|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK077197|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	NM_016784|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK075993|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)	AK076007|Plrg1|53317|pleiotropic regulator 1, PRL1 homolog (Arabidopsis)
mm9_v1_chr4_-_88368313_88368424	0.190001	CDX1,2,4.p2	AK129338|Klhl9|242521|kelch-like 9 (Drosophila)	BC094556|Klhl9|242521|kelch-like 9 (Drosophila)	AK049803|Klhl9|242521|kelch-like 9 (Drosophila)	AK033231|Klhl9|242521|kelch-like 9 (Drosophila)	NM_172871|Klhl9|242521|kelch-like 9 (Drosophila)
mm9_v1_chr11_+_107340794_107340940	0.188894	CDX1,2,4.p2	AK007619|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK005114|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK152240|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK011806|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK150910|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK152041|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK160283|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	BC004694|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK017843|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK167236|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK008646|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK009969|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK151242|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK162779|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	NM_025894|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	AK007680|Psmd12|66997|proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
mm9_v1_chr10_-_36855668_36856157	0.188604	CDX1,2,4.p2	AK151646|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK153217|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr9_+_98197001_98197080	0.188398	CDX1,2,4.p2	BC005737|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	NM_144533|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK040783|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041526|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3	AK041897|Nmnat3|74080|nicotinamide nucleotide adenylyltransferase 3
mm9_v1_chr2_+_80171439_80171527	0.188082	CDX1,2,4.p2	AK190686|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK204346|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	AK206826|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	BC002207|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10
mm9_v1_chr2_+_129442079_129442192	0.188029	CDX1,2,4.p2	AK195466|Sirpa|19261|signal-regulatory protein alpha
mm9_v1_chr4_-_132019760_132019840	0.188023	CDX1,2,4.p2	BC068306|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012903|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK012886|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	NM_026039|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)	AK159696|Med18|67219|mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)
mm9_v1_chr11_+_74739357_74739420	0.187848	CDX1,2,4.p2	BC047279|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC066040|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001002764|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC077715|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC016550|Smg6|103677|Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr1_+_133904162_133904241	0.187832	CDX1,2,4.p2	NM_007923|Elk4|13714|ELK4, member of ETS oncogene family	AK156537|Elk4|13714|ELK4, member of ETS oncogene family
mm9_v1_chr2_-_4573118_4573191	0.186028	CDX1,2,4.p2	AK139720|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC058631|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC004573|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC028306|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	NM_026045|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135890|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK035073|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135707|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr5_-_115722812_115722858	0.185599	CDX1,2,4.p2	
mm9_v1_chr5_-_124804538_124804560	0.185476	CDX1,2,4.p2	BC103772|Cdk2ap1|13445|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm9_v1_chr5_-_110537170_110537204	0.184798	CDX1,2,4.p2	AK159462|Gtpbp6|107999|GTP binding protein 6 (putative)
mm9_v1_chr8_-_74009856_74009896	0.184342	CDX1,2,4.p2	BC027735|Ano8|382014|anoctamin 8
mm9_v1_chr10_-_86164623_86164759	0.184222	CDX1,2,4.p2	AK031918|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160827|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215377|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK215142|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210698|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK210697|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK205935|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK216702|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK218021|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK186620|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chr1_+_45402907_45402949	0.183636	CDX1,2,4.p2	AK029451|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr12_+_82049290_82049329	0.182822	CDX1,2,4.p2	AK135336|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr10_-_70700764_70701027	0.182741	CDX1,2,4.p2	U57939|Tfam|21780|transcription factor A, mitochondrial	AK004857|Tfam|21780|transcription factor A, mitochondrial	BC001987|Tfam|21780|transcription factor A, mitochondrial	BC083084|Tfam|21780|transcription factor A, mitochondrial	AK050446|Tfam|21780|transcription factor A, mitochondrial	AK167348|Tfam|21780|transcription factor A, mitochondrial	NM_009360|Tfam|21780|transcription factor A, mitochondrial	AK163563|Tfam|21780|transcription factor A, mitochondrial	AK017974|Tfam|21780|transcription factor A, mitochondrial	AK161747|Tfam|21780|transcription factor A, mitochondrial	AK167777|Tfam|21780|transcription factor A, mitochondrial	AK169808|Tfam|21780|transcription factor A, mitochondrial	U63859|Tfam|21780|transcription factor A, mitochondrial	U63858|Tfam|21780|transcription factor A, mitochondrial	U63712|Tfam|21780|transcription factor A, mitochondrial
mm9_v1_chr17_-_43013469_43013643	0.18271	CDX1,2,4.p2	AK046750|Cd2ap|12488|CD2-associated protein
mm9_v1_chr9_-_99776467_99776588	0.182303	CDX1,2,4.p2	BC069948|Sox14|20669|SRY-box containing gene 14	AK138208|Sox14|20669|SRY-box containing gene 14	BC055767|Sox14|20669|SRY-box containing gene 14	BC083360|Sox14|20669|SRY-box containing gene 14	BC100555|Sox14|20669|SRY-box containing gene 14	NM_011440|Sox14|20669|SRY-box containing gene 14
mm9_v1_chr17_-_34253887_34254086	0.182154	CDX1,2,4.p2	AK179882|Brd2|14312|bromodomain containing 2	AK205877|Brd2|14312|bromodomain containing 2	AK218127|Brd2|14312|bromodomain containing 2	AB212273|Brd2|14312|bromodomain containing 2	AB010248|Brd2|14312|bromodomain containing 2
mm9_v1_chr16_+_5086296_5086328	0.182151	CDX1,2,4.p2	
mm9_v1_chr19_-_33466561_33466800	0.181814	CDX1,2,4.p2	DQ788834|Rnls|67795|renalase, FAD-dependent amine oxidase	BC052355|Rnls|67795|renalase, FAD-dependent amine oxidase	AK014866|Rnls|67795|renalase, FAD-dependent amine oxidase	AK018322|Rnls|67795|renalase, FAD-dependent amine oxidase	AK170321|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001146342|Rnls|67795|renalase, FAD-dependent amine oxidase	NM_001167818|Rnls|67795|renalase, FAD-dependent amine oxidase
mm9_v1_chr1_-_141273617_141273676	0.181413	CDX1,2,4.p2	AF406641|Crb1|170788|crumbs homolog 1 (Drosophila)	AY450552|Crb1|170788|crumbs homolog 1 (Drosophila)	NM_133239|Crb1|170788|crumbs homolog 1 (Drosophila)	AF492496|Crb1|170788|crumbs homolog 1 (Drosophila)
mm9_v1_chr2_-_30033944_30034014	0.180844	CDX1,2,4.p2	AK044983|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK036945|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK147162|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	AK046148|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed	NM_172660|D2Wsu81e|227695|DNA segment, Chr 2, Wayne State University 81, expressed
mm9_v1_chr9_+_53149188_53149418	0.180267	CDX1,2,4.p2	AK046924|Exph5|320051|exophilin 5	AK044881|Exph5|320051|exophilin 5
mm9_v1_chr18_-_66162268_66162297	0.180257	CDX1,2,4.p2	AK170799|Lman1|70361|lectin, mannose-binding, 1	AK011495|Lman1|70361|lectin, mannose-binding, 1	AK151599|Lman1|70361|lectin, mannose-binding, 1	AK151949|Lman1|70361|lectin, mannose-binding, 1	AK153554|Lman1|70361|lectin, mannose-binding, 1	NM_001172062|Lman1|70361|lectin, mannose-binding, 1	NM_027400|Lman1|70361|lectin, mannose-binding, 1
mm9_v1_chr18_-_35064624_35064726	0.179923	CDX1,2,4.p2	AK195141|Etf1|225363|eukaryotic translation termination factor 1	AK218551|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr5_-_123438493_123438509	0.179905	CDX1,2,4.p2	AK087953|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr11_+_120459840_120459845	0.179681	CDX1,2,4.p2	NM_001038230|Anapc11|66156|anaphase promoting complex subunit 11
mm9_v1_chr18_+_79306780_79306919	0.179516	CDX1,2,4.p2	AK048807|Gm10265|791301|predicted gene 10265
mm9_v1_chr19_-_44482033_44482056	0.179302	CDX1,2,4.p2	AF509567|Scd1|20249|stearoyl-Coenzyme A desaturase 1	AF509570|Scd1|20249|stearoyl-Coenzyme A desaturase 1	BC007474|Scd1|20249|stearoyl-Coenzyme A desaturase 1	AK142630|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr16_-_85015494_85015607	0.179241	CDX1,2,4.p2	AK209458|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr14_-_109313447_109313461	0.179062	CDX1,2,4.p2	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr9_-_71743854_71743929	0.178937	CDX1,2,4.p2	AK135376|Tcf12|21406|transcription factor 12	AK132002|Tcf12|21406|transcription factor 12	AK133958|Tcf12|21406|transcription factor 12	AK078415|Tcf12|21406|transcription factor 12
mm9_v1_chr6_-_115626589_115626679	0.178399	CDX1,2,4.p2	AK141745|Raf1|110157|v-raf-leukemia viral oncogene 1	NM_029780|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr5_-_17355533_17355611	0.178304	CDX1,2,4.p2	AK172162|Cd36|12491|CD36 antigen	BC010262|Cd36|12491|CD36 antigen	AK150648|Cd36|12491|CD36 antigen	NM_001159556|Cd36|12491|CD36 antigen	NM_001159557|Cd36|12491|CD36 antigen
mm9_v1_chr5_+_115729684_115729726	0.178201	CDX1,2,4.p2	AK014348|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK045993|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK050334|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	BC052345|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK007496|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	NM_026504|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK009825|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)
mm9_v1_chr2_+_103810274_103810481	0.177946	CDX1,2,4.p2	AK013416|Lmo2|16909|LIM domain only 2	BC057880|Lmo2|16909|LIM domain only 2	NM_001142335|Lmo2|16909|LIM domain only 2	NM_008505|Lmo2|16909|LIM domain only 2
mm9_v1_chr1_+_9591347_9591354	0.17729	CDX1,2,4.p2	AK043759|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene	NM_178399|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr2_+_174170886_174171016	0.176615	CDX1,2,4.p2	AK178212|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK182236|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK182338|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK183674|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK186374|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr5_+_104937363_104937405	0.176446	CDX1,2,4.p2	AK164034|BC005561|100042165|cDNA sequence BC005561	NM_001166581|BC005561|100042165|cDNA sequence BC005561
mm9_v1_chr16_+_19760300_19760490	0.176277	CDX1,2,4.p2	AK037166|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	AK083839|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	NM_001159407|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	NM_001159408|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	NM_054052|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	AK032911|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	AK048010|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	BC063076|B3gnt5|108105|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm9_v1_chr3_-_53667683_53667736	0.176006	CDX1,2,4.p2	BC051554|Ufm1|67890|ubiquitin-fold modifier 1	AK008280|Ufm1|67890|ubiquitin-fold modifier 1	AK007788|Ufm1|67890|ubiquitin-fold modifier 1	AK167321|Ufm1|67890|ubiquitin-fold modifier 1	AK148146|Ufm1|67890|ubiquitin-fold modifier 1	AK089948|Ufm1|67890|ubiquitin-fold modifier 1	AK167301|Ufm1|67890|ubiquitin-fold modifier 1	AK011737|Ufm1|67890|ubiquitin-fold modifier 1	AK166332|Ufm1|67890|ubiquitin-fold modifier 1	BC061065|Ufm1|67890|ubiquitin-fold modifier 1	NM_026435|Ufm1|67890|ubiquitin-fold modifier 1
mm9_v1_chr12_+_25741653_25741728	0.175299	CDX1,2,4.p2	BC059030|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr16_+_20141134_20141212	0.175155	CDX1,2,4.p2	NM_001033237|Yeats2|208146|YEATS domain containing 2	NM_001145930|Yeats2|208146|YEATS domain containing 2	NM_001145931|Yeats2|208146|YEATS domain containing 2	AK165933|Yeats2|208146|YEATS domain containing 2	AK160791|Yeats2|208146|YEATS domain containing 2
mm9_v1_chr8_-_106966899_106966946	0.174998	CDX1,2,4.p2	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr13_+_38129095_38129163	0.174476	CDX1,2,4.p2	AK152707|Riok1|71340|RIO kinase 1 (yeast)	BC006884|Riok1|71340|RIO kinase 1 (yeast)	AK017312|Riok1|71340|RIO kinase 1 (yeast)	NM_024242|Riok1|71340|RIO kinase 1 (yeast)
mm9_v1_chr4_-_11249207_11249316	0.174277	CDX1,2,4.p2	AK165377|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	AK144417|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	BC147500|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	BC157932|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	BC157988|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	NM_001081201|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	AK172656|Dpy19l4|381510|dpy-19-like 4 (C. elegans)
mm9_v1_chr17_-_33170297_33170352	0.174216	CDX1,2,4.p2	BC056193|Zfp763|73451|zinc finger protein 763	AK088750|Zfp763|73451|zinc finger protein 763	AK141711|Zfp763|73451|zinc finger protein 763	NM_028543|Zfp763|73451|zinc finger protein 763
mm9_v1_chr11_-_54533036_54533041	0.174194	CDX1,2,4.p2	
mm9_v1_chr1_+_155596555_155596633	0.173587	CDX1,2,4.p2	AK140815|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	NM_011882|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	BC003873|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm9_v1_chr15_+_81742665_81742704	0.173434	CDX1,2,4.p2	AK182718|Aco2|11429|aconitase 2, mitochondrial	AK220091|Aco2|11429|aconitase 2, mitochondrial
mm9_v1_chr8_-_26127211_26127343	0.173406	CDX1,2,4.p2	U41765|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC052710|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	BC047156|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK148174|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK155672|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	AK161778|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr11_-_104411728_104411933	0.173005	CDX1,2,4.p2	AK039377|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK148278|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC023187|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	AK161471|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC157955|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172100|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	BC172149|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)	NM_145436|Cdc27|217232|cell division cycle 27 homolog (S. cerevisiae)
mm9_v1_chr16_-_94509462_94509462	0.172908	CDX1,2,4.p2	BC050090|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	NM_139145|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm9_v1_chr6_-_122287014_122287032	0.172878	CDX1,2,4.p2	U63386|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_001042623|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_007905|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr11_-_107050573_107050694	0.17272	CDX1,2,4.p2	BC024874|Nol11|68979|nucleolar protein 11	AK005123|Nol11|68979|nucleolar protein 11	AK038696|Nol11|68979|nucleolar protein 11	AK078524|Nol11|68979|nucleolar protein 11	AK157743|Nol11|68979|nucleolar protein 11	AK076704|Nol11|68979|nucleolar protein 11	NM_001161329|Nol11|68979|nucleolar protein 11	NM_133702|Nol11|68979|nucleolar protein 11
mm9_v1_chr19_+_22767298_22767313	0.172592	CDX1,2,4.p2	AK052064|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK084402|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK044533|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK051934|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr3_+_63780058_63780135	0.172061	CDX1,2,4.p2	AK143197|Gmps|229363|guanine monophosphate synthetase	NM_001033300|Gmps|229363|guanine monophosphate synthetase	AK169701|Gmps|229363|guanine monophosphate synthetase	AK169043|Gmps|229363|guanine monophosphate synthetase	AK167857|Gmps|229363|guanine monophosphate synthetase	AK049755|Gmps|229363|guanine monophosphate synthetase	BC138411|Gmps|229363|guanine monophosphate synthetase	BC138412|Gmps|229363|guanine monophosphate synthetase	AK168239|Gmps|229363|guanine monophosphate synthetase
mm9_v1_chrM_+_3320_3438	0.171905	CDX1,2,4.p2	
mm9_v1_chr6_-_88396477_88396541	0.17159	CDX1,2,4.p2	AF268871|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AF283518|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	BC099675|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK147924|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	BC024915|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK171885|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK028424|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	AK087501|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific	NM_023060|Eefsec|65967|eukaryotic elongation factor, selenocysteine-tRNA-specific
mm9_v1_chr9_-_61794540_61794605	0.171484	CDX1,2,4.p2	AK013939|Kif23|71819|kinesin family member 23	AK164409|Kif23|71819|kinesin family member 23	BC047273|Kif23|71819|kinesin family member 23	BC003363|Kif23|71819|kinesin family member 23	AK030771|Kif23|71819|kinesin family member 23	NM_024245|Kif23|71819|kinesin family member 23
mm9_v1_chr10_-_24647173_24647229	0.171054	CDX1,2,4.p2	CT010173|Arg1|11846|arginase, liver
mm9_v1_chr7_-_87550315_87550316	0.170636	CDX1,2,4.p2	AK020294|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_001081454|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr18_-_35821788_35821845	0.1706	CDX1,2,4.p2	BC060950|Spata24|71242|spermatogenesis associated 24	AK017218|Spata24|71242|spermatogenesis associated 24	AK016341|Spata24|71242|spermatogenesis associated 24	AK012241|Spata24|71242|spermatogenesis associated 24	AY730532|Spata24|71242|spermatogenesis associated 24	NM_027733|Spata24|71242|spermatogenesis associated 24	NM_029485|Spata24|71242|spermatogenesis associated 24
mm9_v1_chr10_+_127759640_127759648	0.170532	CDX1,2,4.p2	AK013014|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK019927|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr15_+_101914622_101914760	0.170478	CDX1,2,4.p2	AK207103|Eif4b|75705|eukaryotic translation initiation factor 4B	AK180065|Eif4b|75705|eukaryotic translation initiation factor 4B	AK186733|Eif4b|75705|eukaryotic translation initiation factor 4B	AK192567|Eif4b|75705|eukaryotic translation initiation factor 4B	AK210570|Eif4b|75705|eukaryotic translation initiation factor 4B	AK212755|Eif4b|75705|eukaryotic translation initiation factor 4B	AK212975|Eif4b|75705|eukaryotic translation initiation factor 4B	AK213592|Eif4b|75705|eukaryotic translation initiation factor 4B	AK218019|Eif4b|75705|eukaryotic translation initiation factor 4B	AK214822|Eif4b|75705|eukaryotic translation initiation factor 4B	AK203780|Eif4b|75705|eukaryotic translation initiation factor 4B	AK195122|Eif4b|75705|eukaryotic translation initiation factor 4B	AK205492|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr6_+_142246944_142246973	0.170187	CDX1,2,4.p2	NM_010491|Iapp|15874|islet amyloid polypeptide	BC027527|Iapp|15874|islet amyloid polypeptide
mm9_v1_chr13_+_30228397_30228535	0.170119	CDX1,2,4.p2	BC024653|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK020281|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK033388|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK137755|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AK146984|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AB297382|Mboat1|218121|membrane bound O-acyltransferase domain containing 1	AB305045|Mboat1|218121|membrane bound O-acyltransferase domain containing 1
mm9_v1_chr10_+_21993165_21993285	0.170071	CDX1,2,4.p2	NM_001177775|H60b|667281|histocompatibility 60b	FJ594066|Raet1d|56554|retinoic acid early transcript delta
mm9_v1_chr8_-_35153699_35153753	0.169964	CDX1,2,4.p2	
mm9_v1_chr11_-_50125157_50125288	0.169944	CDX1,2,4.p2	L23865|Canx|12330|calnexin	L18888|Canx|12330|calnexin
mm9_v1_chr9_-_101154115_101154130	0.169912	CDX1,2,4.p2	AK042943|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr16_+_43640198_43640217	0.169852	CDX1,2,4.p2	AK080813|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr8_+_85689250_85689250	0.169847	CDX1,2,4.p2	AK049049|Tbc1d9|71310|TBC1 domain family, member 9	NM_001111304|Tbc1d9|71310|TBC1 domain family, member 9	NM_027758|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr4_-_116312481_116312553	0.1696	CDX1,2,4.p2	AK181349|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr2_+_144381976_144382053	0.169087	CDX1,2,4.p2	AK158398|Sec23b|27054|SEC23B (S. cerevisiae)	AK153214|Sec23b|27054|SEC23B (S. cerevisiae)	AK146083|Sec23b|27054|SEC23B (S. cerevisiae)	BC011160|Sec23b|27054|SEC23B (S. cerevisiae)	NM_019787|Sec23b|27054|SEC23B (S. cerevisiae)	AK014597|Sec23b|27054|SEC23B (S. cerevisiae)	AK166330|Sec23b|27054|SEC23B (S. cerevisiae)	AK155168|Sec23b|27054|SEC23B (S. cerevisiae)	AK149693|Sec23b|27054|SEC23B (S. cerevisiae)	AK167382|Sec23b|27054|SEC23B (S. cerevisiae)	AK167732|Sec23b|27054|SEC23B (S. cerevisiae)	AK171597|Sec23b|27054|SEC23B (S. cerevisiae)	BC005464|Sec23b|27054|SEC23B (S. cerevisiae)	AK139729|Sec23b|27054|SEC23B (S. cerevisiae)
mm9_v1_chr8_-_113824073_113824198	0.16843	CDX1,2,4.p2	AK137698|Rfwd3|234736|ring finger and WD repeat domain 3	BC096602|Rfwd3|234736|ring finger and WD repeat domain 3	AK146451|Rfwd3|234736|ring finger and WD repeat domain 3	BC018533|Rfwd3|234736|ring finger and WD repeat domain 3	AK137499|Rfwd3|234736|ring finger and WD repeat domain 3	AK139032|Rfwd3|234736|ring finger and WD repeat domain 3	BC023694|Rfwd3|234736|ring finger and WD repeat domain 3	NM_146218|Rfwd3|234736|ring finger and WD repeat domain 3
mm9_v1_chr13_+_51245730_51245816	0.168333	CDX1,2,4.p2	
mm9_v1_chr2_+_59192308_59192366	0.168306	CDX1,2,4.p2	AK021168|Pkp4|227937|plakophilin 4
mm9_v1_chr11_-_97643692_97643709	0.168069	CDX1,2,4.p2	AK012694|Rpl23|65019|ribosomal protein L23	AK018730|Rpl23|65019|ribosomal protein L23	AK150671|Rpl23|65019|ribosomal protein L23	AK002579|Rpl23|65019|ribosomal protein L23	AK010680|Rpl23|65019|ribosomal protein L23
mm9_v1_chr4_+_104829867_104829919	0.167747	CDX1,2,4.p2	AK159136|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr1_+_43502537_43502605	0.167747	CDX1,2,4.p2	AK051665|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	NM_010879|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	AK014949|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chr3_+_89586320_89586446	0.167409	CDX1,2,4.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr10_+_21015762_21015859	0.167269	CDX1,2,4.p2	NM_001042593|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_001145209|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_019702|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK006626|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK146678|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK166140|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK168671|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK169281|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK012856|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK173091|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC085235|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC010251|Hbs1l|56422|Hbs1-like (S. cerevisiae)
mm9_v1_chr7_-_31435128_31435246	0.167236	CDX1,2,4.p2	AK151000|Rbm42|68035|RNA binding motif protein 42	BC011286|Rbm42|68035|RNA binding motif protein 42	BC027372|Rbm42|68035|RNA binding motif protein 42	BC057928|Rbm42|68035|RNA binding motif protein 42	BC039917|Rbm42|68035|RNA binding motif protein 42	AK013929|Rbm42|68035|RNA binding motif protein 42	BC009148|Rbm42|68035|RNA binding motif protein 42	NM_133693|Rbm42|68035|RNA binding motif protein 42
mm9_v1_chr1_-_24012436_24012480	0.167191	CDX1,2,4.p2	AK003789|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	BC028981|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK004301|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK007909|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	AK015824|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene	NM_026503|1110058L19Rik|68002|RIKEN cDNA 1110058L19 gene
mm9_v1_chr8_-_81344956_81345026	0.167079	CDX1,2,4.p2	BC099484|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC098230|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	BC030427|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK141884|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK078392|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK161686|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	AK019126|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr2_+_174167172_174167173	0.167006	CDX1,2,4.p2	BC048834|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr7_-_121261237_121261289	0.166865	CDX1,2,4.p2	BC003871|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	AK172113|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	AK172037|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2
mm9_v1_chr6_+_120413200_120413305	0.166378	CDX1,2,4.p2	NM_008359|Il17ra|16172|interleukin 17 receptor A	AK036587|Il17ra|16172|interleukin 17 receptor A	AK080226|Il17ra|16172|interleukin 17 receptor A
mm9_v1_chr6_-_145167481_145167570	0.166324	CDX1,2,4.p2	BC014700|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC031623|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr7_-_16807341_16807387	0.16629	CDX1,2,4.p2	BC080856|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK129062|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK004733|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	NM_027883|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34
mm9_v1_chr11_+_29618531_29618569	0.166182	CDX1,2,4.p2	NM_024226|Rtn4|68585|reticulon 4	AY102283|Rtn4|68585|reticulon 4
mm9_v1_chr16_+_44370127_44370136	0.165053	CDX1,2,4.p2	BC024956|Spice1|212514|spindle and centriole associated protein 1
mm9_v1_chr9_+_46081146_46081375	0.165047	CDX1,2,4.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr10_+_82822948_82823029	0.164998	CDX1,2,4.p2	NM_026579|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK128995|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK049544|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK160350|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK147063|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK020067|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	AK162255|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	BC050904|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	BC094241|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed	BC035946|D10Wsu102e|28109|DNA segment, Chr 10, Wayne State University 102, expressed
mm9_v1_chr5_+_120566489_120566582	0.164285	CDX1,2,4.p2	AK146493|Rbm19|74111|RNA binding motif protein 19	AK053511|Rbm19|74111|RNA binding motif protein 19	BC025619|Rbm19|74111|RNA binding motif protein 19	NM_028762|Rbm19|74111|RNA binding motif protein 19	AK167100|Rbm19|74111|RNA binding motif protein 19	BC034010|Rbm19|74111|RNA binding motif protein 19
mm9_v1_chr2_+_125977876_125977974	0.164083	CDX1,2,4.p2	AK149746|Dtwd1|69185|DTW domain containing 1	NM_026981|Dtwd1|69185|DTW domain containing 1	BC020149|Dtwd1|69185|DTW domain containing 1
mm9_v1_chr19_-_4439350_4439433	0.163992	CDX1,2,4.p2	X84325|Rhod|11854|ras homolog gene family, member D	BC005652|Rhod|11854|ras homolog gene family, member D	AK008880|Rhod|11854|ras homolog gene family, member D	NM_007485|Rhod|11854|ras homolog gene family, member D	BC047989|Rhod|11854|ras homolog gene family, member D	D89821|Rhod|11854|ras homolog gene family, member D
mm9_v1_chr6_-_3444484_3444497	0.163742	CDX1,2,4.p2	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr13_+_54682957_54683061	0.163656	CDX1,2,4.p2	AK090305|Arl10|56795|ADP-ribosylation factor-like 10
mm9_v1_chr5_+_30969259_30969346	0.163647	CDX1,2,4.p2	AF012709|Cenpa|12615|centromere protein A	NM_007681|Cenpa|12615|centromere protein A	AK040313|Cenpa|12615|centromere protein A	AK041138|Cenpa|12615|centromere protein A	AK089033|Cenpa|12615|centromere protein A	AK053763|Cenpa|12615|centromere protein A	AK010718|Cenpa|12615|centromere protein A	BC011038|Cenpa|12615|centromere protein A	AK011399|Cenpa|12615|centromere protein A	BC012280|Cenpa|12615|centromere protein A
mm9_v1_chr11_-_100579201_100579275	0.163394	CDX1,2,4.p2	
mm9_v1_chr14_+_32149804_32149909	0.16301	CDX1,2,4.p2	AK154277|Capn7|12339|calpain 7	AK169334|Capn7|12339|calpain 7	BC095980|Capn7|12339|calpain 7	AB028640|Capn7|12339|calpain 7	NM_009796|Capn7|12339|calpain 7
mm9_v1_chr2_+_103935948_103936036	0.162955	CDX1,2,4.p2	NM_001111060|Cd59a|12509|CD59a antigen	NM_007652|Cd59a|12509|CD59a antigen	AK005507|Cd59a|12509|CD59a antigen	AK018136|Cd59a|12509|CD59a antigen	AK002743|Cd59a|12509|CD59a antigen	AK080728|Cd59a|12509|CD59a antigen	U60473|Cd59a|12509|CD59a antigen
mm9_v1_chr2_-_155937623_155937702	0.162418	CDX1,2,4.p2	AK220288|Cpne1|266692|copine I	BC052473|Rbm12|75710|RNA binding motif protein 12	BC057554|Cpne1|266692|copine I	AK035014|Rbm12|75710|RNA binding motif protein 12	AK080772|Rbm12|75710|RNA binding motif protein 12	AF393215|Rbm12|75710|RNA binding motif protein 12	AF393216|Rbm12|75710|RNA binding motif protein 12	AK028882|Cpne1|266692|copine I	AK152323|Cpne1|266692|copine I	NM_029397|Rbm12|75710|RNA binding motif protein 12	NM_170588|Cpne1|266692|copine I	NM_170590|Cpne1|266692|copine I	NM_170598|Rbm12|75710|RNA binding motif protein 12
mm9_v1_chr11_-_98859189_98859196	0.162367	CDX1,2,4.p2	U01915|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr5_-_134705423_134705497	0.162123	CDX1,2,4.p2	L11455|Ncf1|17969|neutrophil cytosolic factor 1	BC055836|Ncf1|17969|neutrophil cytosolic factor 1	AK152386|Ncf1|17969|neutrophil cytosolic factor 1	AK151593|Ncf1|17969|neutrophil cytosolic factor 1	AK149668|Ncf1|17969|neutrophil cytosolic factor 1	AK171559|Ncf1|17969|neutrophil cytosolic factor 1	AK150945|Ncf1|17969|neutrophil cytosolic factor 1	AK151316|Ncf1|17969|neutrophil cytosolic factor 1	AK152992|Ncf1|17969|neutrophil cytosolic factor 1	AK162308|Ncf1|17969|neutrophil cytosolic factor 1	AK162623|Ncf1|17969|neutrophil cytosolic factor 1	AK170462|Ncf1|17969|neutrophil cytosolic factor 1	AB002663|Ncf1|17969|neutrophil cytosolic factor 1	AK149619|Ncf1|17969|neutrophil cytosolic factor 1	AK149732|Ncf1|17969|neutrophil cytosolic factor 1	NM_010876|Ncf1|17969|neutrophil cytosolic factor 1
mm9_v1_chr5_-_113709569_113709620	0.162075	CDX1,2,4.p2	AK167632|Sgsm1|52850|small G protein signaling modulator 1	AK010756|Sgsm1|52850|small G protein signaling modulator 1	AK051018|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr9_+_92502076_92502169	0.161692	CDX1,2,4.p2	
mm9_v1_chr2_+_109857966_109858261	0.161507	CDX1,2,4.p2	AK147056|Ccdc34|68201|coiled-coil domain containing 34	NM_026613|Ccdc34|68201|coiled-coil domain containing 34	BC108339|Ccdc34|68201|coiled-coil domain containing 34	AK019172|Ccdc34|68201|coiled-coil domain containing 34	AK033555|Ccdc34|68201|coiled-coil domain containing 34	AK019247|Ccdc34|68201|coiled-coil domain containing 34	AK012383|Ccdc34|68201|coiled-coil domain containing 34	BC062248|Ccdc34|68201|coiled-coil domain containing 34	AK014021|Ccdc34|68201|coiled-coil domain containing 34	BC089458|Ccdc34|68201|coiled-coil domain containing 34	BC049229|Ccdc34|68201|coiled-coil domain containing 34
mm9_v1_chr17_+_35189798_35189804	0.160687	CDX1,2,4.p2	
mm9_v1_chr3_+_94497485_94497530	0.160682	CDX1,2,4.p2	NM_019414|Selenbp2|20342|selenium binding protein 2	S56599|Selenbp2|20342|selenium binding protein 2	BC024106|Selenbp2|20342|selenium binding protein 2
mm9_v1_chrX_+_155970637_155970677	0.160586	CDX1,2,4.p2	BC075674|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	AK145159|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr15_+_76173936_76173991	0.160358	CDX1,2,4.p2	AK011288|Cyc1|66445|cytochrome c-1	NM_025567|Cyc1|66445|cytochrome c-1	AK151299|Cyc1|66445|cytochrome c-1	AK170272|Cyc1|66445|cytochrome c-1	BC005620|Cyc1|66445|cytochrome c-1	AK002815|Cyc1|66445|cytochrome c-1	BC082790|Cyc1|66445|cytochrome c-1
mm9_v1_chr12_-_86611513_86611563	0.159684	CDX1,2,4.p2	BC079861|Mlh3|217716|mutL homolog 3 (E coli)	NM_175337|Mlh3|217716|mutL homolog 3 (E coli)	BC072599|Mlh3|217716|mutL homolog 3 (E coli)	AK132195|Mlh3|217716|mutL homolog 3 (E coli)	AK035887|Mlh3|217716|mutL homolog 3 (E coli)
mm9_v1_chr10_+_10869224_10869321	0.159677	CDX1,2,4.p2	AK082160|Shprh|268281|SNF2 histone linker PHD RING helicase	AK053448|Shprh|268281|SNF2 histone linker PHD RING helicase	NM_001077707|Shprh|268281|SNF2 histone linker PHD RING helicase	NM_172937|Shprh|268281|SNF2 histone linker PHD RING helicase	BC055003|Shprh|268281|SNF2 histone linker PHD RING helicase	AK048265|Shprh|268281|SNF2 histone linker PHD RING helicase	AK085285|Shprh|268281|SNF2 histone linker PHD RING helicase	AK011809|Shprh|268281|SNF2 histone linker PHD RING helicase	AY162264|Shprh|268281|SNF2 histone linker PHD RING helicase	AY162266|Shprh|268281|SNF2 histone linker PHD RING helicase
mm9_v1_chr10_+_126504125_126504226	0.159622	CDX1,2,4.p2	
mm9_v1_chr3_-_90237092_90237456	0.159419	CDX1,2,4.p2	BC055344|Ints3|229543|integrator complex subunit 3	AK033296|Ints3|229543|integrator complex subunit 3	AK146699|Ints3|229543|integrator complex subunit 3
mm9_v1_chr6_+_40421405_40421491	0.159266	CDX1,2,4.p2	AK013425|Ssbp1|381760|single-stranded DNA binding protein 1	NM_028358|Ssbp1|381760|single-stranded DNA binding protein 1	NM_212468|Ssbp1|381760|single-stranded DNA binding protein 1	BC028648|Ssbp1|381760|single-stranded DNA binding protein 1	BC061183|Ssbp1|381760|single-stranded DNA binding protein 1	AK090242|Ssbp1|381760|single-stranded DNA binding protein 1	AK090272|Ssbp1|381760|single-stranded DNA binding protein 1	BC060290|Ssbp1|381760|single-stranded DNA binding protein 1	AK160556|Ssbp1|381760|single-stranded DNA binding protein 1
mm9_v1_chr3_-_10331334_10331440	0.158485	CDX1,2,4.p2	BC055722|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AF042730|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160467|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK083238|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK145472|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK011770|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160203|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK165977|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	BC049080|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK078406|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK152774|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK147778|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK153457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK168457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	NM_018864|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1
mm9_v1_chr4_+_95224197_95224229	0.15832	CDX1,2,4.p2	NM_001113412|Fggy|75578|FGGY carbohydrate kinase domain containing	AK138439|Fggy|75578|FGGY carbohydrate kinase domain containing	AK082737|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr2_-_63936044_63936094	0.15812	CDX1,2,4.p2	AF263913|Fign|60344|fidgetin	AK163474|Fign|60344|fidgetin	AK164536|Fign|60344|fidgetin	NM_021716|Fign|60344|fidgetin	AK143787|Fign|60344|fidgetin	BC059266|Fign|60344|fidgetin
mm9_v1_chr17_-_86544514_86544514	0.157733	CDX1,2,4.p2	AK021298|Srbd1|78586|S1 RNA binding domain 1	NM_030133|Srbd1|78586|S1 RNA binding domain 1
mm9_v1_chr10_-_17635007_17635085	0.15763	CDX1,2,4.p2	BC094026|Heca|380629|headcase homolog (Drosophila)	AK134782|Heca|380629|headcase homolog (Drosophila)
mm9_v1_chr1_-_23929098_23929255	0.157461	CDX1,2,4.p2	BC006946|Smap1|98366|stromal membrane-associated protein 1	NM_028534|Smap1|98366|stromal membrane-associated protein 1	BC100537|Smap1|98366|stromal membrane-associated protein 1
mm9_v1_chr3_+_67178037_67178091	0.156932	CDX1,2,4.p2	BC027526|Mlf1|17349|myeloid leukemia factor 1	AF100171|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr16_-_8672242_8672250	0.15693	CDX1,2,4.p2	AK170411|Carhsp1|52502|calcium regulated heat stable protein 1	AK002853|Carhsp1|52502|calcium regulated heat stable protein 1	AK004711|Carhsp1|52502|calcium regulated heat stable protein 1	AK143612|Carhsp1|52502|calcium regulated heat stable protein 1	AK154460|Carhsp1|52502|calcium regulated heat stable protein 1	AK168504|Carhsp1|52502|calcium regulated heat stable protein 1	NM_025821|Carhsp1|52502|calcium regulated heat stable protein 1	AK003926|Carhsp1|52502|calcium regulated heat stable protein 1	AK149875|Carhsp1|52502|calcium regulated heat stable protein 1	AK155318|Carhsp1|52502|calcium regulated heat stable protein 1	AK158112|Carhsp1|52502|calcium regulated heat stable protein 1	AK158252|Carhsp1|52502|calcium regulated heat stable protein 1	AK165373|Carhsp1|52502|calcium regulated heat stable protein 1	AK171282|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr2_+_44966657_44966746	0.156632	CDX1,2,4.p2	BC031611|Gm13476|433424|predicted gene 13476	NM_001177394|Gm13476|433424|predicted gene 13476
mm9_v1_chr10_+_127691166_127691233	0.156568	CDX1,2,4.p2	NM_133996|Apon|28194|apolipoprotein N	AK083289|Apon|28194|apolipoprotein N
mm9_v1_chr13_+_67274117_67274142	0.156377	CDX1,2,4.p2	NM_001013769|Rsl1|380855|regulator of sex limited protein 1	AK164698|Rsl1|380855|regulator of sex limited protein 1	BC103788|Rsl1|380855|regulator of sex limited protein 1
mm9_v1_chr15_+_97800138_97800260	0.156332	CDX1,2,4.p2	
mm9_v1_chr2_+_25203630_25203665	0.155441	CDX1,2,4.p2	BC025500|Man1b1|227619|mannosidase, alpha, class 1B, member 1
mm9_v1_chrX_+_132781054_132781063	0.15543	CDX1,2,4.p2	AK213578|Wbp5|22381|WW domain binding protein 5
mm9_v1_chr15_+_89041957_89042070	0.154939	CDX1,2,4.p2	AK084684|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_026813|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_027805|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK083335|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	BC024879|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK018403|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chr10_+_66648458_66648510	0.154548	CDX1,2,4.p2	AK087621|Jmjd1c|108829|jumonji domain containing 1C	AK170460|Jmjd1c|108829|jumonji domain containing 1C	AK135461|Jmjd1c|108829|jumonji domain containing 1C	AK085500|Jmjd1c|108829|jumonji domain containing 1C	AK133016|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr12_+_101348348_101348406	0.154451	CDX1,2,4.p2	AK161641|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK161723|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK133926|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK088411|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK148906|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	BC003860|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK166783|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK169015|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1
mm9_v1_chrX_+_103211038_103211115	0.153748	CDX1,2,4.p2	BC089538|Cox7b|66142|cytochrome c oxidase subunit VIIb	NM_025379|Cox7b|66142|cytochrome c oxidase subunit VIIb	AK132086|Cox7b|66142|cytochrome c oxidase subunit VIIb	AK003414|Cox7b|66142|cytochrome c oxidase subunit VIIb	AK002593|Cox7b|66142|cytochrome c oxidase subunit VIIb	BC024350|Cox7b|66142|cytochrome c oxidase subunit VIIb
mm9_v1_chr11_+_80022587_80022605	0.153639	CDX1,2,4.p2	AK169811|Rhot1|59040|ras homolog gene family, member T1	AK021245|Rhot1|59040|ras homolog gene family, member T1	AK019059|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr9_-_21564742_21564759	0.153319	CDX1,2,4.p2	AK153185|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK011728|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK167877|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr13_+_52678805_52678835	0.153155	CDX1,2,4.p2	AK049207|Sykb|20963|spleen tyrosine kinase	NM_001198977|Sykb|20963|spleen tyrosine kinase
mm9_v1_chr16_-_11137100_11137212	0.152626	CDX1,2,4.p2	AK218593|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr13_-_21622917_21622982	0.152299	CDX1,2,4.p2	BC050152|Zfp192|93681|zinc finger protein 192	AK032718|Zfp192|93681|zinc finger protein 192	AK134299|Zfp192|93681|zinc finger protein 192	NM_139141|Zfp192|93681|zinc finger protein 192
mm9_v1_chr5_-_3647805_3647982	0.152297	CDX1,2,4.p2	BC019449|Gatad1|67210|GATA zinc finger domain containing 1	AK078416|Gatad1|67210|GATA zinc finger domain containing 1	AB047921|Gatad1|67210|GATA zinc finger domain containing 1	AK012921|Gatad1|67210|GATA zinc finger domain containing 1	NM_026033|Gatad1|67210|GATA zinc finger domain containing 1
mm9_v1_chr17_-_27327042_27327306	0.152296	CDX1,2,4.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr8_+_113381876_113381915	0.15181	CDX1,2,4.p2	AK193863|Cog4|102339|component of oligomeric golgi complex 4
mm9_v1_chr9_+_51894884_51895031	0.151137	CDX1,2,4.p2	AK216134|Rdx|19684|radixin
mm9_v1_chr16_+_44811858_44811936	0.151126	CDX1,2,4.p2	AK089262|Cd200r4|239849|CD200 receptor 4
mm9_v1_chr8_+_86184863_86184976	0.151032	CDX1,2,4.p2	AF061263|Gipc1|67903|GIPC PDZ domain containing family, member 1
mm9_v1_chr10_+_115580947_115580958	0.151021	CDX1,2,4.p2	Z30313|Ptprr|19279|protein tyrosine phosphatase, receptor type, R
mm9_v1_chr8_+_131256428_131256477	0.150026	CDX1,2,4.p2	AK008343|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr5_+_34185760_34185844	0.149656	CDX1,2,4.p2	NM_001081102|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_001177884|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	NM_175231|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)	BC079668|Whsc1|107823|Wolf-Hirschhorn syndrome candidate 1 (human)
mm9_v1_chr8_+_74120004_74120094	0.149379	CDX1,2,4.p2	
mm9_v1_chr18_-_53904193_53904270	0.149361	CDX1,2,4.p2	AK044952|Cep120|225523|centrosomal protein 120	BC053439|Cep120|225523|centrosomal protein 120	NM_178686|Cep120|225523|centrosomal protein 120	AK089236|Cep120|225523|centrosomal protein 120	AK089242|Cep120|225523|centrosomal protein 120	AK044808|Cep120|225523|centrosomal protein 120	AK079319|Cep120|225523|centrosomal protein 120	AK047594|Cep120|225523|centrosomal protein 120	AK038916|Cep120|225523|centrosomal protein 120
mm9_v1_chr13_+_22036962_22036998	0.149336	CDX1,2,4.p2	BC053084|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	NM_183014|Zfp184|193452|zinc finger protein 184 (Kruppel-like)	AK036164|Zfp184|193452|zinc finger protein 184 (Kruppel-like)
mm9_v1_chr14_+_47993487_47993627	0.149156	CDX1,2,4.p2	X16074|Lgals3|16854|lectin, galactose binding, soluble 3	NM_001145953|Lgals3|16854|lectin, galactose binding, soluble 3	NM_010705|Lgals3|16854|lectin, galactose binding, soluble 3	AK149783|Lgals3|16854|lectin, galactose binding, soluble 3	AK008593|Lgals3|16854|lectin, galactose binding, soluble 3	AK155244|Lgals3|16854|lectin, galactose binding, soluble 3	AK089249|Lgals3|16854|lectin, galactose binding, soluble 3	AK155484|Lgals3|16854|lectin, galactose binding, soluble 3	AK159536|Lgals3|16854|lectin, galactose binding, soluble 3	BC132328|Lgals3|16854|lectin, galactose binding, soluble 3	BC138790|Lgals3|16854|lectin, galactose binding, soluble 3	BC145419|Lgals3|16854|lectin, galactose binding, soluble 3	X16834|Lgals3|16854|lectin, galactose binding, soluble 3
mm9_v1_chr9_+_119803988_119804030	0.149138	CDX1,2,4.p2	BC050106|Wdr48|67561|WD repeat domain 48	AK031244|Wdr48|67561|WD repeat domain 48	BC062967|Wdr48|67561|WD repeat domain 48	AK018396|Wdr48|67561|WD repeat domain 48	AK030041|Wdr48|67561|WD repeat domain 48	AK035273|Wdr48|67561|WD repeat domain 48	AK035864|Wdr48|67561|WD repeat domain 48	AK043970|Wdr48|67561|WD repeat domain 48	AK128953|Wdr48|67561|WD repeat domain 48	NM_026236|Wdr48|67561|WD repeat domain 48	AK033631|Wdr48|67561|WD repeat domain 48	AK012599|Wdr48|67561|WD repeat domain 48	BC048155|Wdr48|67561|WD repeat domain 48
mm9_v1_chr3_-_107948968_107949026	0.148705	CDX1,2,4.p2	BC041107|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	BC003462|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK168578|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK133749|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK169067|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK167438|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm9_v1_chr13_+_54167169_54167276	0.148371	CDX1,2,4.p2	AK012650|Sfxn1|14057|sideroflexin 1	NM_027324|Sfxn1|14057|sideroflexin 1	AF325260|Sfxn1|14057|sideroflexin 1	BC005743|Sfxn1|14057|sideroflexin 1	AK151110|Sfxn1|14057|sideroflexin 1
mm9_v1_chr16_+_33769005_33769131	0.148131	CDX1,2,4.p2	AK087096|Heg1|77446|HEG homolog 1 (zebrafish)
mm9_v1_chrX_-_160465891_160465950	0.14745	CDX1,2,4.p2	BC034413|Car5b|56078|carbonic anhydrase 5b, mitochondrial	AK046691|Car5b|56078|carbonic anhydrase 5b, mitochondrial	AK085670|Car5b|56078|carbonic anhydrase 5b, mitochondrial	NM_181315|Car5b|56078|carbonic anhydrase 5b, mitochondrial
mm9_v1_chr18_+_34475207_34475256	0.146857	CDX1,2,4.p2	AK142170|Apc|11789|adenomatosis polyposis coli
mm9_v1_chr8_-_90886051_90886133	0.146695	CDX1,2,4.p2	AF084259|Brd7|26992|bromodomain containing 7	AK142758|Brd7|26992|bromodomain containing 7	NM_012047|Brd7|26992|bromodomain containing 7	AK138934|Brd7|26992|bromodomain containing 7
mm9_v1_chr10_-_62254978_62254996	0.146056	CDX1,2,4.p2	BC079652|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC010199|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr13_+_43493729_43493803	0.145174	CDX1,2,4.p2	NM_023554|Nol7|70078|nucleolar protein 7	AK008670|Nol7|70078|nucleolar protein 7	AK019972|Nol7|70078|nucleolar protein 7	AB041566|Nol7|70078|nucleolar protein 7	AK032963|Nol7|70078|nucleolar protein 7	BC130012|Nol7|70078|nucleolar protein 7	BC090637|Nol7|70078|nucleolar protein 7
mm9_v1_chr11_+_100442831_100442963	0.145162	CDX1,2,4.p2	AK217119|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr4_-_109959185_109959241	0.144736	CDX1,2,4.p2	D31953|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK014133|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	DQ437511|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr9_-_53475519_53475552	0.144678	CDX1,2,4.p2	BC075710|Cul5|75717|cullin 5
mm9_v1_chr16_-_85120798_85120921	0.144396	CDX1,2,4.p2	AK194233|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr12_-_85559793_85559836	0.144068	CDX1,2,4.p2	AK155768|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163501|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr3_+_97817440_97817471	0.143965	CDX1,2,4.p2	AK157200|Notch2|18129|Notch gene homolog 2 (Drosophila)	D32210|Notch2|18129|Notch gene homolog 2 (Drosophila)	NM_010928|Notch2|18129|Notch gene homolog 2 (Drosophila)
mm9_v1_chr4_-_46416895_46416973	0.142953	CDX1,2,4.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr11_-_62094853_62094905	0.142815	CDX1,2,4.p2	BC109343|Zswim7|69747|zinc finger, SWIM-type containing 7	AK010472|Zswim7|69747|zinc finger, SWIM-type containing 7	NM_027198|Zswim7|69747|zinc finger, SWIM-type containing 7
mm9_v1_chr7_-_134530626_134530679	0.142572	CDX1,2,4.p2	AK020267|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene	BC031466|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene	AK035847|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene	NM_030226|9130019O22Rik|78921|RIKEN cDNA 9130019O22 gene
mm9_v1_chr17_+_34701239_34701309	0.142446	CDX1,2,4.p2	NM_010929|Notch4|18132|Notch gene homolog 4 (Drosophila)	AK166261|Notch4|18132|Notch gene homolog 4 (Drosophila)	AK166493|Notch4|18132|Notch gene homolog 4 (Drosophila)	M80456|Notch4|18132|Notch gene homolog 4 (Drosophila)	BC138044|Notch4|18132|Notch gene homolog 4 (Drosophila)	BC145114|Notch4|18132|Notch gene homolog 4 (Drosophila)
mm9_v1_chr1_-_36864987_36865029	0.14239	CDX1,2,4.p2	BC120906|Tmem131|56030|transmembrane protein 131	BC139734|Tmem131|56030|transmembrane protein 131
mm9_v1_chr11_+_51926650_51926652	0.142151	CDX1,2,4.p2	AK199825|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm9_v1_chr2_+_78709363_78709419	0.142034	CDX1,2,4.p2	AK168072|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK048227|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK076011|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	X92664|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr12_+_75065510_75065528	0.141933	CDX1,2,4.p2	AK152833|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1	AK138261|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1	NM_178392|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1
mm9_v1_chrX_+_97710893_97711108	0.141669	CDX1,2,4.p2	AK218313|Igbp1|18518|immunoglobulin (CD79A) binding protein 1	AK210875|Igbp1|18518|immunoglobulin (CD79A) binding protein 1
mm9_v1_chr11_+_114530028_114530110	0.140976	CDX1,2,4.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr4_-_40886191_40886208	0.140795	CDX1,2,4.p2	AK188292|Bag1|12017|BCL2-associated athanogene 1
mm9_v1_chr7_-_140315100_140315165	0.140542	CDX1,2,4.p2	NM_009980|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr13_-_108516475_108516490	0.140306	CDX1,2,4.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr3_-_107949028_107949092	0.140293	CDX1,2,4.p2	AK077490|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	NM_010306|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	BC020009|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK169285|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3	AK004566|Gnai3|14679|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm9_v1_chr13_+_8884851_8884851	0.140119	CDX1,2,4.p2	NM_145360|Idi1|319554|isopentenyl-diphosphate delta isomerase
mm9_v1_chr14_-_104215770_104216122	0.139552	CDX1,2,4.p2	AK202768|Ednrb|13618|endothelin receptor type B	AK191663|Ednrb|13618|endothelin receptor type B	AK203096|Ednrb|13618|endothelin receptor type B	AK215811|Ednrb|13618|endothelin receptor type B
mm9_v1_chr19_+_8915018_8915039	0.139424	CDX1,2,4.p2	AK004634|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK151606|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK155753|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK170183|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr13_-_58227306_58227430	0.139243	CDX1,2,4.p2	BC048746|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chrX_+_65931715_65931923	0.139147	CDX1,2,4.p2	AK053829|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	BC079671|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	NM_008031|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK140343|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK046605|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK053701|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080898|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK080948|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	L23971|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr6_-_114987860_114987905	0.138998	CDX1,2,4.p2	AK160774|1500001M20Rik|68971|RIKEN cDNA 1500001M20 gene	NM_026894|1500001M20Rik|68971|RIKEN cDNA 1500001M20 gene	AK005100|1500001M20Rik|68971|RIKEN cDNA 1500001M20 gene
mm9_v1_chr11_+_120459958_120460039	0.138209	CDX1,2,4.p2	BC023039|Anapc11|66156|anaphase promoting complex subunit 11
mm9_v1_chr4_+_88783273_88783343	0.138205	CDX1,2,4.p2	AK167319|Mtap|66902|methylthioadenosine phosphorylase	NM_024433|Mtap|66902|methylthioadenosine phosphorylase	AK005064|Mtap|66902|methylthioadenosine phosphorylase	AK011421|Mtap|66902|methylthioadenosine phosphorylase	BC003858|Mtap|66902|methylthioadenosine phosphorylase	AK089916|Mtap|66902|methylthioadenosine phosphorylase
mm9_v1_chr7_+_125856066_125856131	0.137942	CDX1,2,4.p2	BC053103|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene	NM_182995|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene	AK141641|6330503K22Rik|101565|RIKEN cDNA 6330503K22 gene
mm9_v1_chr10_-_83989221_83989289	0.137937	CDX1,2,4.p2	AK205593|Ckap4|216197|cytoskeleton-associated protein 4	AK212843|Ckap4|216197|cytoskeleton-associated protein 4	AK217343|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr2_-_155479292_155479385	0.137914	CDX1,2,4.p2	BC003931|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr19_+_44637331_44637363	0.137674	CDX1,2,4.p2	AK154774|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	BC130013|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	NM_176958|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK084960|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK043636|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK141867|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor
mm9_v1_chr1_+_19202046_19202134	0.137643	CDX1,2,4.p2	AK032045|Tcfap2b|21419|transcription factor AP-2 beta	NM_001025305|Tcfap2b|21419|transcription factor AP-2 beta
mm9_v1_chr7_-_117509277_117509385	0.137509	CDX1,2,4.p2	BC015069|Sbf2|319934|SET binding factor 2
mm9_v1_chr6_-_122289630_122289670	0.137148	CDX1,2,4.p2	S73882|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73883|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73884|Phc1|13619|polyhomeotic-like 1 (Drosophila)	BC046535|Phc1|13619|polyhomeotic-like 1 (Drosophila)	AK167590|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr15_+_76174029_76174095	0.137113	CDX1,2,4.p2	AK192516|Cyc1|66445|cytochrome c-1
mm9_v1_chr7_+_30969184_30969226	0.137073	CDX1,2,4.p2	AK079950|Cox7a1|12865|cytochrome c oxidase, subunit VIIa 1	NM_009944|Cox7a1|12865|cytochrome c oxidase, subunit VIIa 1	BC060974|Cox7a1|12865|cytochrome c oxidase, subunit VIIa 1	AF037370|Cox7a1|12865|cytochrome c oxidase, subunit VIIa 1
mm9_v1_chr6_-_145024451_145024466	0.136936	CDX1,2,4.p2	AK012821|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr3_-_65940346_65940359	0.136211	CDX1,2,4.p2	AB085189|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	AK013398|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)	NM_028357|Veph1|72789|ventricular zone expressed PH domain homolog 1 (zebrafish)
mm9_v1_chr15_+_91958558_91958558	0.136047	CDX1,2,4.p2	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr7_+_13483153_13483228	0.135781	CDX1,2,4.p2	AK052559|Zscan22|232878|zinc finger and SCAN domain containing 22	AK085207|Zscan22|232878|zinc finger and SCAN domain containing 22	NM_001001447|Zscan22|232878|zinc finger and SCAN domain containing 22	AK163694|Zscan22|232878|zinc finger and SCAN domain containing 22	AK078591|Zscan22|232878|zinc finger and SCAN domain containing 22	BC026676|Zscan22|232878|zinc finger and SCAN domain containing 22
mm9_v1_chr15_+_102300972_102301062	0.135674	CDX1,2,4.p2	NM_001103165|Pcbp2|18521|poly(rC) binding protein 2	NM_001103166|Pcbp2|18521|poly(rC) binding protein 2	NM_001174073|Pcbp2|18521|poly(rC) binding protein 2	NM_011042|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr15_-_8394462_8394663	0.135431	CDX1,2,4.p2	AJ627033|Nipbl|71175|Nipped-B homolog (Drosophila)	AJ640138|Nipbl|71175|Nipped-B homolog (Drosophila)	NM_027707|Nipbl|71175|Nipped-B homolog (Drosophila)	NM_201232|Nipbl|71175|Nipped-B homolog (Drosophila)
mm9_v1_chr17_-_45724536_45724608	0.135197	CDX1,2,4.p2	AK198320|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK212529|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr2_+_91050920_91051054	0.135083	CDX1,2,4.p2	AK080581|Acp2|11432|acid phosphatase 2, lysosomal
mm9_v1_chr8_+_108424267_108424373	0.135033	CDX1,2,4.p2	AK153861|Pskh1|244631|protein serine kinase H1	AK053397|Pskh1|244631|protein serine kinase H1	AK154570|Pskh1|244631|protein serine kinase H1	AK166338|Pskh1|244631|protein serine kinase H1	BC050128|Pskh1|244631|protein serine kinase H1	NM_173432|Pskh1|244631|protein serine kinase H1
mm9_v1_chr8_+_86239094_86239097	0.135019	CDX1,2,4.p2	NM_197982|Ddx39|68278|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
mm9_v1_chr1_-_84741605_84741713	0.134058	CDX1,2,4.p2	BC004085|Trip12|14897|thyroid hormone receptor interactor 12
mm9_v1_chr7_-_19751441_19751475	0.133717	CDX1,2,4.p2	AK050472|Gipr|381853|gastric inhibitory polypeptide receptor	AK146552|Gipr|381853|gastric inhibitory polypeptide receptor	NM_001080815|Gipr|381853|gastric inhibitory polypeptide receptor
mm9_v1_chr8_-_108224931_108224989	0.133316	CDX1,2,4.p2	AK171345|Acd|497652|adrenocortical dysplasia	AK160599|Acd|497652|adrenocortical dysplasia	BC138694|Acd|497652|adrenocortical dysplasia	BC138695|Acd|497652|adrenocortical dysplasia	BC145384|Acd|497652|adrenocortical dysplasia	AK032683|Acd|497652|adrenocortical dysplasia	AK145959|Acd|497652|adrenocortical dysplasia	AK171458|Acd|497652|adrenocortical dysplasia	AK052768|Acd|497652|adrenocortical dysplasia
mm9_v1_chr2_-_84614960_84614971	0.133234	CDX1,2,4.p2	BC002026|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1	AK167585|Serping1|12258|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm9_v1_chr6_+_134590957_134591017	0.132889	CDX1,2,4.p2	NM_026371|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	BC023059|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr9_+_121643763_121643808	0.132578	CDX1,2,4.p2	AK052484|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr8_+_15032567_15032716	0.132444	CDX1,2,4.p2	BC049667|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	BC038875|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr11_-_93829704_93829834	0.132353	CDX1,2,4.p2	NM_008704|Nme1|18102|non-metastatic cells 1, protein (NM23A) expressed in
mm9_v1_chr10_+_82359714_82359858	0.131965	CDX1,2,4.p2	AK007891|Txnrd1|50493|thioredoxin reductase 1	AK202828|Txnrd1|50493|thioredoxin reductase 1	AK204569|Txnrd1|50493|thioredoxin reductase 1	AK217830|Txnrd1|50493|thioredoxin reductase 1	AK194198|Txnrd1|50493|thioredoxin reductase 1	AK203123|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr6_-_87793898_87794088	0.131889	CDX1,2,4.p2	AK207643|Cnbp|12785|cellular nucleic acid binding protein	AK188144|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr16_-_98169926_98169967	0.131712	CDX1,2,4.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chrX_-_162948399_162948409	0.131702	CDX1,2,4.p2	AK140929|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	BC067008|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	NM_001007577|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing
mm9_v1_chrX_+_132806184_132806337	0.131661	CDX1,2,4.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr19_+_42245102_42245124	0.131271	CDX1,2,4.p2	BC042595|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr7_-_125259660_125259706	0.131142	CDX1,2,4.p2	BC051205|Rps15a|267019|ribosomal protein S15A	BC054792|Rps15a|267019|ribosomal protein S15A	NM_170669|Rps15a|267019|ribosomal protein S15A	BC076563|Rps15a|267019|ribosomal protein S15A	AK152932|Rps15a|267019|ribosomal protein S15A	AK008350|Rps15a|267019|ribosomal protein S15A	AK012485|Rps15a|267019|ribosomal protein S15A	AK011514|Rps15a|267019|ribosomal protein S15A	AK012618|Rps15a|267019|ribosomal protein S15A	AK019235|Rps15a|267019|ribosomal protein S15A	AK028135|Rps15a|267019|ribosomal protein S15A	BC086885|Rps15a|267019|ribosomal protein S15A	BC087867|Rps15a|267019|ribosomal protein S15A	AK032522|Rps15a|267019|ribosomal protein S15A	AK010652|Rps15a|267019|ribosomal protein S15A
mm9_v1_chr1_+_95395940_95395952	0.130772	CDX1,2,4.p2	AK196297|Sept2|18000|septin 2	AK216929|Sept2|18000|septin 2
mm9_v1_chr18_-_38094995_38095137	0.130599	CDX1,2,4.p2	AK140734|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK220466|Diap1|13367|diaphanous homolog 1 (Drosophila)	NM_007858|Diap1|13367|diaphanous homolog 1 (Drosophila)	U96963|Diap1|13367|diaphanous homolog 1 (Drosophila)	BC070412|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK012707|Diap1|13367|diaphanous homolog 1 (Drosophila)
mm9_v1_chr10_-_70386552_70386556	0.130315	CDX1,2,4.p2	AK082289|Bicc1|83675|bicaudal C homolog 1 (Drosophila)
mm9_v1_chr8_+_74446723_74446817	0.130132	CDX1,2,4.p2	NM_133358|Zfp617|170938|zinc finger protein 617	AK143880|Zfp617|170938|zinc finger protein 617	AB020542|Zfp617|170938|zinc finger protein 617	AK146644|Zfp617|170938|zinc finger protein 617	BC014712|Zfp617|170938|zinc finger protein 617
mm9_v1_chr7_+_19705202_19705237	0.129974	CDX1,2,4.p2	NM_175530|Fbxo46|243867|F-box protein 46	AK030147|Fbxo46|243867|F-box protein 46	BC049813|Fbxo46|243867|F-box protein 46
mm9_v1_chr2_-_126943852_126943869	0.129855	CDX1,2,4.p2	AK193653|Ncaph|215387|non-SMC condensin I complex, subunit H
mm9_v1_chr6_+_87852230_87852326	0.129642	CDX1,2,4.p2	AK193696|Copg|54161|coatomer protein complex, subunit gamma	AK194411|Copg|54161|coatomer protein complex, subunit gamma	AK195632|Copg|54161|coatomer protein complex, subunit gamma	AK197699|Copg|54161|coatomer protein complex, subunit gamma	AK201780|Copg|54161|coatomer protein complex, subunit gamma	AK204845|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chrX_-_165110450_165110461	0.129499	CDX1,2,4.p2	AK089368|Msl3|17692|male-specific lethal 3 homolog (Drosophila)
mm9_v1_chr6_+_64992584_64992660	0.128993	CDX1,2,4.p2	NM_007958|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	X69942|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr11_-_34647016_34647097	0.128975	CDX1,2,4.p2	AK139553|Ccdc99|70385|coiled-coil domain containing 99	AK163303|Ccdc99|70385|coiled-coil domain containing 99
mm9_v1_chr5_-_65726802_65726885	0.128602	CDX1,2,4.p2	U07157|Rfc1|19687|replication factor C (activator 1) 1	X72711|Rfc1|19687|replication factor C (activator 1) 1	BC085174|Rfc1|19687|replication factor C (activator 1) 1	U01222|Rfc1|19687|replication factor C (activator 1) 1	U36441|Rfc1|19687|replication factor C (activator 1) 1	BC085173|Rfc1|19687|replication factor C (activator 1) 1	AK136937|Rfc1|19687|replication factor C (activator 1) 1	AK132028|Rfc1|19687|replication factor C (activator 1) 1	AK146164|Rfc1|19687|replication factor C (activator 1) 1	AK146314|Rfc1|19687|replication factor C (activator 1) 1	NM_011258|Rfc1|19687|replication factor C (activator 1) 1	U15037|Rfc1|19687|replication factor C (activator 1) 1
mm9_v1_chr14_-_17081689_17081734	0.128334	CDX1,2,4.p2	AK016905|Oxsm|71147|3-oxoacyl-ACP synthase, mitochondrial
mm9_v1_chr10_-_77734341_77734501	0.127844	CDX1,2,4.p2	
mm9_v1_chr1_+_94803538_94803618	0.127728	CDX1,2,4.p2	AK163560|Dusp28|67446|dual specificity phosphatase 28	AK002934|Dusp28|67446|dual specificity phosphatase 28	NM_175118|Dusp28|67446|dual specificity phosphatase 28	BC119127|Dusp28|67446|dual specificity phosphatase 28	BC051598|Dusp28|67446|dual specificity phosphatase 28	AK088940|Dusp28|67446|dual specificity phosphatase 28
mm9_v1_chr17_+_29797537_29797684	0.127275	CDX1,2,4.p2	AK080379|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	NM_028791|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK049190|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK154773|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK042060|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK043733|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK088624|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK150392|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK151194|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152276|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152799|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153021|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153066|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	BC024691|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK005044|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152452|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK198101|Ftsjd2|74157|FtsJ methyltransferase domain containing 2
mm9_v1_chr6_+_129491258_129491317	0.127213	CDX1,2,4.p2	
mm9_v1_chr4_+_108000728_108000805	0.127206	CDX1,2,4.p2	AK081388|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK044999|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	NM_027250|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK008518|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168902|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	AK168344|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene	BC012391|2010305A19Rik|69893|RIKEN cDNA 2010305A19 gene
mm9_v1_chr5_-_93611701_93611836	0.127009	CDX1,2,4.p2	
mm9_v1_chr13_-_67500685_67500702	0.126778	CDX1,2,4.p2	AK083314|Zfp429|72807|zinc finger protein 429	BC046484|Zfp429|72807|zinc finger protein 429	NM_001080941|Zfp429|72807|zinc finger protein 429
mm9_v1_chr5_-_110698814_110698873	0.126666	CDX1,2,4.p2	BC052179|Pgam5|72542|phosphoglycerate mutase family member 5	BC021317|Pgam5|72542|phosphoglycerate mutase family member 5	AK162266|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr13_+_24706474_24706497	0.126453	CDX1,2,4.p2	AK041665|Fam65b|193385|family with sequence similarity 65, member B	NM_178658|Fam65b|193385|family with sequence similarity 65, member B	AK036452|Fam65b|193385|family with sequence similarity 65, member B	AK040887|Fam65b|193385|family with sequence similarity 65, member B
mm9_v1_chr14_-_70999625_70999666	0.1264	CDX1,2,4.p2	NM_194345|Fam160b2|239170|family with sequence similarity 160, member B2	BC050861|Fam160b2|239170|family with sequence similarity 160, member B2
mm9_v1_chr15_-_79656745_79656946	0.126046	CDX1,2,4.p2	AK162544|Cbx6|494448|chromobox homolog 6	AK202886|Cbx6|494448|chromobox homolog 6	AK207037|Cbx6|494448|chromobox homolog 6	AK218930|Cbx6|494448|chromobox homolog 6
mm9_v1_chr2_-_72931338_72931457	0.125603	CDX1,2,4.p2	
mm9_v1_chr17_-_29215905_29215915	0.125436	CDX1,2,4.p2	AK144811|LOC100499420|100499420|lincRNA-p21
mm9_v1_chr13_-_19487596_19487657	0.125339	CDX1,2,4.p2	AK018331|Stard3nl|76205|STARD3 N-terminal like	AK152378|Stard3nl|76205|STARD3 N-terminal like	BC003334|Stard3nl|76205|STARD3 N-terminal like	NM_024270|Stard3nl|76205|STARD3 N-terminal like
mm9_v1_chr5_+_90893032_90893045	0.125315	CDX1,2,4.p2	M16111|Alb|11657|albumin
mm9_v1_chr1_+_40082201_40082235	0.125106	CDX1,2,4.p2	AK020498|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK167747|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4	AK004047|Map4k4|26921|mitogen-activated protein kinase kinase kinase kinase 4
mm9_v1_chr12_-_79962445_79962624	0.125054	CDX1,2,4.p2	AF298810|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	BC033457|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK150981|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK152367|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK153250|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK165761|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK146448|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	AK147910|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D	NM_023721|Atp6v1d|73834|ATPase, H+ transporting, lysosomal V1 subunit D
mm9_v1_chr6_-_142271469_142271500	0.124501	CDX1,2,4.p2	AF240694|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	NM_130861|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	AK029706|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5
mm9_v1_chr2_+_72018059_72018093	0.124191	CDX1,2,4.p2	AK004874|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr1_+_180336178_180336231	0.124171	CDX1,2,4.p2	AK019802|Efcab2|68226|EF-hand calcium binding domain 2	AK019663|Efcab2|68226|EF-hand calcium binding domain 2	AK015157|Efcab2|68226|EF-hand calcium binding domain 2	AK029880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr12_-_103196366_103196464	0.123997	CDX1,2,4.p2	AF537188|Atxn3|110616|ataxin 3	AK030842|Atxn3|110616|ataxin 3	AK008675|Atxn3|110616|ataxin 3	BC087880|Atxn3|110616|ataxin 3	BC049743|Atxn3|110616|ataxin 3	NM_001167914|Atxn3|110616|ataxin 3	NM_029705|Atxn3|110616|ataxin 3
mm9_v1_chr16_-_30267577_30267656	0.123807	CDX1,2,4.p2	BC025836|Cpn2|71756|carboxypeptidase N, polypeptide 2	AK005049|Cpn2|71756|carboxypeptidase N, polypeptide 2	NM_027904|Cpn2|71756|carboxypeptidase N, polypeptide 2
mm9_v1_chr2_-_66278870_66278908	0.123754	CDX1,2,4.p2	AK046001|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	AK134744|Scn1a|20265|sodium channel, voltage-gated, type I, alpha	NM_018733|Scn1a|20265|sodium channel, voltage-gated, type I, alpha
mm9_v1_chr11_-_106860803_106860838	0.123665	CDX1,2,4.p2	NM_010655|Kpna2|16647|karyopherin (importin) alpha 2
mm9_v1_chr5_+_106039499_106039528	0.123478	CDX1,2,4.p2	AK081556|Lrrc8c|100604|leucine rich repeat containing 8 family, member C
mm9_v1_chr10_+_89280918_89280988	0.123216	CDX1,2,4.p2	AK079985|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK046432|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK008586|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr19_+_38470458_38470592	0.123051	CDX1,2,4.p2	BC137663|Tmem20|240660|transmembrane protein 20	BC137664|Tmem20|240660|transmembrane protein 20	AK041618|Tmem20|240660|transmembrane protein 20	NM_175507|Tmem20|240660|transmembrane protein 20	AK030517|Tmem20|240660|transmembrane protein 20	AK171987|Tmem20|240660|transmembrane protein 20	AK052365|Tmem20|240660|transmembrane protein 20
mm9_v1_chrX_-_7000037_7000113	0.122737	CDX1,2,4.p2	BC072610|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AF038507|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene	AK008437|2010204K13Rik|68355|RIKEN cDNA 2010204K13 gene
mm9_v1_chr11_+_80022573_80022582	0.122544	CDX1,2,4.p2	BC046785|Rhot1|59040|ras homolog gene family, member T1	AK147749|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr8_-_81345034_81345050	0.122287	CDX1,2,4.p2	AK158236|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_001191004|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_030145|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr8_-_18741455_18741532	0.12219	CDX1,2,4.p2	BC138309|Angpt2|11601|angiopoietin 2	BC138313|Angpt2|11601|angiopoietin 2	AF004326|Angpt2|11601|angiopoietin 2	BC027216|Angpt2|11601|angiopoietin 2	AK048622|Angpt2|11601|angiopoietin 2	AK156132|Angpt2|11601|angiopoietin 2
mm9_v1_chr1_+_174065263_174065366	0.122171	CDX1,2,4.p2	AK218140|Pex19|19298|peroxisomal biogenesis factor 19
mm9_v1_chr5_-_122286761_122286840	0.121921	CDX1,2,4.p2	BC006759|Sh2b3|16923|SH2B adaptor protein 3	NM_008507|Sh2b3|16923|SH2B adaptor protein 3	AK157297|Sh2b3|16923|SH2B adaptor protein 3	AK172551|Sh2b3|16923|SH2B adaptor protein 3	AK172573|Sh2b3|16923|SH2B adaptor protein 3	AK156499|Sh2b3|16923|SH2B adaptor protein 3
mm9_v1_chr2_+_32583221_32583245	0.121907	CDX1,2,4.p2	AK042709|Sh2d3c|27387|SH2 domain containing 3C	AK085885|Sh2d3c|27387|SH2 domain containing 3C	AK135231|Sh2d3c|27387|SH2 domain containing 3C	AB030442|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr5_+_140895245_140895309	0.121776	CDX1,2,4.p2	AK033722|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK170938|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	NM_133916|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK167618|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	AK089978|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC031704|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC023767|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B	BC051065|Eif3b|27979|eukaryotic translation initiation factor 3, subunit B
mm9_v1_chr7_-_109907908_109907984	0.121663	CDX1,2,4.p2	AK014616|Olfr78|170639|olfactory receptor 78	AK028467|Olfr78|170639|olfactory receptor 78	AK036356|Olfr78|170639|olfactory receptor 78	NM_001168503|Olfr78|170639|olfactory receptor 78	NM_130866|Olfr78|170639|olfactory receptor 78
mm9_v1_chr6_-_99216494_99216530	0.121586	CDX1,2,4.p2	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr5_+_138422718_138422792	0.121529	CDX1,2,4.p2	NM_013478|Azgp1|12007|alpha-2-glycoprotein 1, zinc	AK005051|Azgp1|12007|alpha-2-glycoprotein 1, zinc	BC061646|Azgp1|12007|alpha-2-glycoprotein 1, zinc	AY248694|Azgp1|12007|alpha-2-glycoprotein 1, zinc	D21059|Azgp1|12007|alpha-2-glycoprotein 1, zinc
mm9_v1_chr2_-_25439345_25439437	0.121053	CDX1,2,4.p2	
mm9_v1_chr18_-_32719516_32719687	0.121035	CDX1,2,4.p2	AK002769|Gypc|71683|glycophorin C	AK082930|Gypc|71683|glycophorin C	AK152607|Gypc|71683|glycophorin C	AK159730|Gypc|71683|glycophorin C	BC027408|Gypc|71683|glycophorin C	AK089652|Gypc|71683|glycophorin C	AY234183|Gypc|71683|glycophorin C	NM_001048207|Gypc|71683|glycophorin C
mm9_v1_chr19_+_7495023_7495107	0.121021	CDX1,2,4.p2	BC096549|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene	BC096638|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr10_-_112363848_112364044	0.120853	CDX1,2,4.p2	AK078766|Atxn7l3b|382423|ataxin 7-like 3B	AK051537|Atxn7l3b|382423|ataxin 7-like 3B
mm9_v1_chr18_-_78006524_78006535	0.120743	CDX1,2,4.p2	AK147599|Haus1|225745|HAUS augmin-like complex, subunit 1
mm9_v1_chr11_-_94515034_94515062	0.120555	CDX1,2,4.p2	BC089459|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr2_-_44972914_44972969	0.120264	CDX1,2,4.p2	AJ535778|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr11_+_101489262_101489282	0.119945	CDX1,2,4.p2	AK010457|Rdm1|66599|RAD52 motif 1	NM_025654|Rdm1|66599|RAD52 motif 1	BC055013|Rdm1|66599|RAD52 motif 1	AK003135|Rdm1|66599|RAD52 motif 1	BC026811|Rdm1|66599|RAD52 motif 1
mm9_v1_chr11_+_70658310_70658476	0.119875	CDX1,2,4.p2	AK205489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AB001750|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	D86066|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129853|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC129854|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248489|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AF248490|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr19_-_34329804_34329828	0.119575	CDX1,2,4.p2	X13297|Acta2|11475|actin, alpha 2, smooth muscle, aorta	BC064800|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK017374|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK156331|Acta2|11475|actin, alpha 2, smooth muscle, aorta	NM_007392|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr6_-_29559792_29559839	0.119539	CDX1,2,4.p2	AK049446|Tnpo3|320938|transportin 3	BC075678|Tnpo3|320938|transportin 3
mm9_v1_chr2_-_154198449_154198468	0.1195	CDX1,2,4.p2	AK010081|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK010097|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	NM_025876|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK088517|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK136570|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1
mm9_v1_chr10_-_44178474_44178587	0.119232	CDX1,2,4.p2	AK133503|Prdm1|12142|PR domain containing 1, with ZNF domain	BC129801|Prdm1|12142|PR domain containing 1, with ZNF domain	NM_007548|Prdm1|12142|PR domain containing 1, with ZNF domain	U08185|Prdm1|12142|PR domain containing 1, with ZNF domain
mm9_v1_chr9_+_109905895_109906037	0.11881	CDX1,2,4.p2	
mm9_v1_chr3_+_95086814_95087156	0.118746	CDX1,2,4.p2	NM_133858|Fam63a|75007|family with sequence similarity 63, member A	NM_199475|Fam63a|75007|family with sequence similarity 63, member A	AK169673|Fam63a|75007|family with sequence similarity 63, member A	AK036838|Fam63a|75007|family with sequence similarity 63, member A	BC094388|Fam63a|75007|family with sequence similarity 63, member A	AK087859|Fam63a|75007|family with sequence similarity 63, member A	AK162551|Fam63a|75007|family with sequence similarity 63, member A
mm9_v1_chr8_-_72149070_72149075	0.118416	CDX1,2,4.p2	AK139223|Zfp868|234362|zinc finger protein 868	NM_001045553|Zfp868|234362|zinc finger protein 868
mm9_v1_chr14_+_29831283_29831689	0.118016	CDX1,2,4.p2	NM_176920|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK044492|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	AK138618|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC099587|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC132594|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1	BC145990|Lrtm1|319476|leucine-rich repeats and transmembrane domains 1
mm9_v1_chr11_+_94812919_94812953	0.117822	CDX1,2,4.p2	AK159300|Col1a1|12842|collagen, type I, alpha 1
mm9_v1_chr6_+_30459848_30459899	0.117723	CDX1,2,4.p2	AK006038|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene	NM_027073|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene	BC049755|1700025E21Rik|75647|RIKEN cDNA 1700025E21 gene
mm9_v1_chr9_-_107888185_107888220	0.117531	CDX1,2,4.p2	BC115538|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK020090|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK076092|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene
mm9_v1_chr14_+_75642093_75642165	0.117507	CDX1,2,4.p2	AF164524|Cpb2|56373|carboxypeptidase B2 (plasma)	NM_019775|Cpb2|56373|carboxypeptidase B2 (plasma)	AK004045|Cpb2|56373|carboxypeptidase B2 (plasma)	BC089577|Cpb2|56373|carboxypeptidase B2 (plasma)	AB021968|Cpb2|56373|carboxypeptidase B2 (plasma)	AF186188|Cpb2|56373|carboxypeptidase B2 (plasma)
mm9_v1_chr13_+_21454688_21454753	0.117381	CDX1,2,4.p2	AK129138|Zscan12|22758|zinc finger and SCAN domain containing 12	NM_016684|Zscan12|22758|zinc finger and SCAN domain containing 12	AK075886|Zscan12|22758|zinc finger and SCAN domain containing 12	AK139837|Zscan12|22758|zinc finger and SCAN domain containing 12	AK142005|Zscan12|22758|zinc finger and SCAN domain containing 12	BC027041|Zscan12|22758|zinc finger and SCAN domain containing 12
mm9_v1_chr15_+_31154178_31154275	0.117112	CDX1,2,4.p2	BC024876|Dap|223453|death-associated protein	BC010828|Dap|223453|death-associated protein	AK169162|Dap|223453|death-associated protein	BC057669|Dap|223453|death-associated protein	AK167579|Dap|223453|death-associated protein	AK014991|Dap|223453|death-associated protein	AK167688|Dap|223453|death-associated protein
mm9_v1_chr11_-_40562329_40562432	0.117111	CDX1,2,4.p2	
mm9_v1_chr17_-_56358176_56358341	0.116804	CDX1,2,4.p2	AK050021|Dpp9|224897|dipeptidylpeptidase 9	AK078301|Dpp9|224897|dipeptidylpeptidase 9	BC057631|Dpp9|224897|dipeptidylpeptidase 9	AK050023|Dpp9|224897|dipeptidylpeptidase 9	NM_172624|Dpp9|224897|dipeptidylpeptidase 9	AK039652|Dpp9|224897|dipeptidylpeptidase 9
mm9_v1_chr19_-_41289262_41289457	0.116785	CDX1,2,4.p2	AK008994|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK159802|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr11_-_4987973_4988127	0.116156	CDX1,2,4.p2	AK178351|Ewsr1|14030|Ewing sarcoma breakpoint region 1
mm9_v1_chr1_-_154749751_154749796	0.11603	CDX1,2,4.p2	BC082789|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	BC086651|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001005507|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160256|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr5_-_108304062_108304125	0.11589	CDX1,2,4.p2	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr4_+_134483092_134483164	0.11575	CDX1,2,4.p2	
mm9_v1_chr5_-_135115175_135115219	0.115582	CDX1,2,4.p2	AK169312|Eif4h|22384|eukaryotic translation initiation factor 4H	AK149841|Eif4h|22384|eukaryotic translation initiation factor 4H	AK136999|Eif4h|22384|eukaryotic translation initiation factor 4H	AK135390|Eif4h|22384|eukaryotic translation initiation factor 4H	AK166567|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169353|Eif4h|22384|eukaryotic translation initiation factor 4H	NM_033561|Eif4h|22384|eukaryotic translation initiation factor 4H	AK045004|Eif4h|22384|eukaryotic translation initiation factor 4H	AK150088|Eif4h|22384|eukaryotic translation initiation factor 4H	BC014796|Eif4h|22384|eukaryotic translation initiation factor 4H	AK088818|Eif4h|22384|eukaryotic translation initiation factor 4H	AK168872|Eif4h|22384|eukaryotic translation initiation factor 4H	AK169407|Eif4h|22384|eukaryotic translation initiation factor 4H	AK132034|Eif4h|22384|eukaryotic translation initiation factor 4H
mm9_v1_chr19_+_46139268_46139363	0.11513	CDX1,2,4.p2	
mm9_v1_chrM_+_409_428	0.115033	CDX1,2,4.p2	
mm9_v1_chr1_+_37426061_37426065	0.114959	CDX1,2,4.p2	AK035867|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC120541|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144747|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	BC144748|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I	NM_172971|Inpp4a|269180|inositol polyphosphate-4-phosphatase, type I
mm9_v1_chr9_-_36604816_36604957	0.114796	CDX1,2,4.p2	AK147776|Ei24|13663|etoposide induced 2.4 mRNA	AK159927|Ei24|13663|etoposide induced 2.4 mRNA	AK145018|Ei24|13663|etoposide induced 2.4 mRNA	AK172233|Ei24|13663|etoposide induced 2.4 mRNA
mm9_v1_chr3_+_88520743_88520881	0.114651	CDX1,2,4.p2	NM_001163310|Rit1|19769|Ras-like without CAAX 1	NM_009069|Rit1|19769|Ras-like without CAAX 1	AK014126|Rit1|19769|Ras-like without CAAX 1	AK164196|Rit1|19769|Ras-like without CAAX 1	AK005357|Rit1|19769|Ras-like without CAAX 1	AK168254|Rit1|19769|Ras-like without CAAX 1	BC012694|Rit1|19769|Ras-like without CAAX 1	AK018785|Rit1|19769|Ras-like without CAAX 1	U71205|Rit1|19769|Ras-like without CAAX 1
mm9_v1_chr6_-_137118238_137118241	0.114483	CDX1,2,4.p2	NM_001164212|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	NM_001164214|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr5_+_119214935_119215085	0.114408	CDX1,2,4.p2	AK083611|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr16_+_92292580_92292633	0.114348	CDX1,2,4.p2	AK008619|Kcne2|246133|potassium voltage-gated channel, Isk-related subfamily, gene 2	NM_134110|Kcne2|246133|potassium voltage-gated channel, Isk-related subfamily, gene 2
mm9_v1_chr10_-_42198203_42198370	0.114241	CDX1,2,4.p2	AF520417|Lace1|215951|lactation elevated 1	AK170996|Lace1|215951|lactation elevated 1	BC089595|Lace1|215951|lactation elevated 1	AK044595|Lace1|215951|lactation elevated 1	NM_145743|Lace1|215951|lactation elevated 1
mm9_v1_chr19_-_5349326_5349384	0.114111	CDX1,2,4.p2	BC027680|Cst6|73720|cystatin E/M	BC061036|Cst6|73720|cystatin E/M	AK003744|Cst6|73720|cystatin E/M
mm9_v1_chr8_-_108282498_108282528	0.11382	CDX1,2,4.p2	AK017684|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2	AK141521|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2	NM_027469|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2	BC013623|Gfod2|70575|glucose-fructose oxidoreductase domain containing 2
mm9_v1_chr11_-_100334035_100334069	0.113745	CDX1,2,4.p2	AK169910|Klhl11|217194|kelch-like 11 (Drosophila)
mm9_v1_chr10_+_13686174_13686209	0.113601	CDX1,2,4.p2	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr12_+_110884340_110884400	0.113474	CDX1,2,4.p2	AF498294|Rian|75745|RNA imprinted and accumulated in nucleus	AB063319|Rian|75745|RNA imprinted and accumulated in nucleus	AK017440|Rian|75745|RNA imprinted and accumulated in nucleus
mm9_v1_chr4_+_154927575_154927585	0.113277	CDX1,2,4.p2	AK209108|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK213242|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK217766|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK219535|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr11_-_3309227_3309253	0.113242	CDX1,2,4.p2	NM_010718|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr7_-_137689460_137689480	0.112131	CDX1,2,4.p2	AK179472|Nsmce4a|67872|non-SMC element 4 homolog A (S. cerevisiae)
mm9_v1_chr19_+_5601857_5601905	0.111788	CDX1,2,4.p2	NM_026616|Rnaseh2c|68209|ribonuclease H2, subunit C	AF346604|Rnaseh2c|68209|ribonuclease H2, subunit C	AK018776|Rnaseh2c|68209|ribonuclease H2, subunit C	AK011556|Rnaseh2c|68209|ribonuclease H2, subunit C	BC024333|Rnaseh2c|68209|ribonuclease H2, subunit C
mm9_v1_chr3_-_157689714_157689821	0.111509	CDX1,2,4.p2	AK218604|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183815|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183987|Srsf11|69207|serine/arginine-rich splicing factor 11	AK212592|Srsf11|69207|serine/arginine-rich splicing factor 11	AK215844|Srsf11|69207|serine/arginine-rich splicing factor 11	AK216204|Srsf11|69207|serine/arginine-rich splicing factor 11	AK218039|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr16_+_22920486_22920556	0.111379	CDX1,2,4.p2	AY138460|Fetub|59083|fetuin beta	BC018341|Fetub|59083|fetuin beta
mm9_v1_chr14_-_21275426_21275574	0.111127	CDX1,2,4.p2	AK211261|Anxa7|11750|annexin A7
mm9_v1_chr9_-_98502063_98502097	0.110592	CDX1,2,4.p2	BC037653|Mrps22|64655|mitochondrial ribosomal protein S22	BC051198|Mrps22|64655|mitochondrial ribosomal protein S22	AK013925|Mrps22|64655|mitochondrial ribosomal protein S22	AK154600|Mrps22|64655|mitochondrial ribosomal protein S22	NM_025485|Mrps22|64655|mitochondrial ribosomal protein S22
mm9_v1_chr12_+_58331537_58331633	0.110352	CDX1,2,4.p2	AK020763|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)	AK006974|Mipol1|73490|mirror-image polydactyly gene 1 homolog (human)
mm9_v1_chr4_-_133527108_133527157	0.110019	CDX1,2,4.p2	AK205621|Dhdds|67422|dehydrodolichyl diphosphate synthase
mm9_v1_chr8_+_23337748_23337837	0.109896	CDX1,2,4.p2	BC029898|Thsd1|56229|thrombospondin, type I, domain 1	AK049636|Thsd1|56229|thrombospondin, type I, domain 1	BC051957|Thsd1|56229|thrombospondin, type I, domain 1	AK052555|Thsd1|56229|thrombospondin, type I, domain 1
mm9_v1_chr17_+_24078962_24078969	0.109819	CDX1,2,4.p2	BC049605|Sbp|20234|spermine binding protein	NM_011321|Sbp|20234|spermine binding protein	X06246|Sbp|20234|spermine binding protein
mm9_v1_chr13_-_23677831_23677860	0.10962	CDX1,2,4.p2	BC069889|Hist1h2be|319179|histone cluster 1, H2be
mm9_v1_chr12_-_71328622_71328669	0.109579	CDX1,2,4.p2	AK145989|Pygl|110095|liver glycogen phosphorylase	NM_133198|Pygl|110095|liver glycogen phosphorylase
mm9_v1_chr11_+_51085400_51085500	0.109447	CDX1,2,4.p2	AF005423|Clk4|12750|CDC like kinase 4	AK161739|Clk4|12750|CDC like kinase 4
mm9_v1_chr7_+_111367306_111367377	0.109431	CDX1,2,4.p2	AK040000|Trim6|94088|tripartite motif-containing 6	NM_001013616|Trim6|94088|tripartite motif-containing 6	AK021253|Trim6|94088|tripartite motif-containing 6	AK033396|Trim6|94088|tripartite motif-containing 6	AK049238|Trim6|94088|tripartite motif-containing 6	BC138965|Trim6|94088|tripartite motif-containing 6
mm9_v1_chr3_-_27052733_27052775	0.108553	CDX1,2,4.p2	AK040174|Ect2|13605|ect2 oncogene	BC045614|Ect2|13605|ect2 oncogene	BC025565|Ect2|13605|ect2 oncogene	BC032155|Ect2|13605|ect2 oncogene	BC023881|Ect2|13605|ect2 oncogene	AK157718|Ect2|13605|ect2 oncogene	L11316|Ect2|13605|ect2 oncogene	AK220452|Ect2|13605|ect2 oncogene	NM_001177625|Ect2|13605|ect2 oncogene	NM_007900|Ect2|13605|ect2 oncogene
mm9_v1_chr5_-_52552870_52552894	0.108549	CDX1,2,4.p2	AK171814|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr2_-_168559743_168559783	0.108509	CDX1,2,4.p2	AK089064|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr13_+_33119282_33119422	0.107729	CDX1,2,4.p2	AK005491|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	NM_011452|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	U96705|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	AK167563|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	AK171850|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	BC064768|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b
mm9_v1_chr1_+_66747396_66747477	0.107682	CDX1,2,4.p2	AK150008|Rpe|66646|ribulose-5-phosphate-3-epimerase	BC019126|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK029088|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK007735|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK017774|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK088152|Rpe|66646|ribulose-5-phosphate-3-epimerase	NM_025683|Rpe|66646|ribulose-5-phosphate-3-epimerase	Z78161|Rpe|66646|ribulose-5-phosphate-3-epimerase	BC006953|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK185217|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK193547|Rpe|66646|ribulose-5-phosphate-3-epimerase
mm9_v1_chr8_-_87364463_87364577	0.107612	CDX1,2,4.p2	X92410|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC138684|Rad23a|19358|RAD23a homolog (S. cerevisiae)	BC145372|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK009733|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK038300|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK161875|Rad23a|19358|RAD23a homolog (S. cerevisiae)	NM_009010|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK045224|Rad23a|19358|RAD23a homolog (S. cerevisiae)	AK165467|Rad23a|19358|RAD23a homolog (S. cerevisiae)
mm9_v1_chr2_+_32087125_32087136	0.10663	CDX1,2,4.p2	AK161103|Prrc2b|227723|proline-rich coiled-coil 2B
mm9_v1_chr11_-_106642357_106642481	0.106596	CDX1,2,4.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chrX_-_165015162_165015164	0.106133	CDX1,2,4.p2	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr5_-_128097687_128097794	0.106022	CDX1,2,4.p2	BC016233|Slc15a4|100561|solute carrier family 15, member 4	NM_133895|Slc15a4|100561|solute carrier family 15, member 4	AY050630|Slc15a4|100561|solute carrier family 15, member 4	AK048529|Slc15a4|100561|solute carrier family 15, member 4	AK154238|Slc15a4|100561|solute carrier family 15, member 4
mm9_v1_chr18_-_67712374_67712430	0.105391	CDX1,2,4.p2	BC058669|Spire1|68166|spire homolog 1 (Drosophila)	NM_194355|Spire1|68166|spire homolog 1 (Drosophila)	BC094375|Spire1|68166|spire homolog 1 (Drosophila)
mm9_v1_chr9_-_63225646_63225720	0.104985	CDX1,2,4.p2	BC013697|Map2k5|23938|mitogen-activated protein kinase kinase 5	AB019374|Map2k5|23938|mitogen-activated protein kinase kinase 5	NM_011840|Map2k5|23938|mitogen-activated protein kinase kinase 5	AK020716|Map2k5|23938|mitogen-activated protein kinase kinase 5	AK159261|Map2k5|23938|mitogen-activated protein kinase kinase 5	AK166137|Map2k5|23938|mitogen-activated protein kinase kinase 5
mm9_v1_chrX_-_132602648_132602774	0.104887	CDX1,2,4.p2	AF097439|Bex2|12069|brain expressed X-linked 2	BC027529|Bex2|12069|brain expressed X-linked 2	AK132005|Bex2|12069|brain expressed X-linked 2	NM_009749|Bex2|12069|brain expressed X-linked 2
mm9_v1_chr3_+_55265654_55265683	0.104798	CDX1,2,4.p2	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr3_+_95392855_95392908	0.104768	CDX1,2,4.p2	NM_001177669|Golph3l|229593|golgi phosphoprotein 3-like	NM_001177670|Golph3l|229593|golgi phosphoprotein 3-like	NM_146133|Golph3l|229593|golgi phosphoprotein 3-like	BC047147|Golph3l|229593|golgi phosphoprotein 3-like	AK008434|Golph3l|229593|golgi phosphoprotein 3-like	AK089547|Golph3l|229593|golgi phosphoprotein 3-like	AK160454|Golph3l|229593|golgi phosphoprotein 3-like	AK169724|Golph3l|229593|golgi phosphoprotein 3-like	AK167675|Golph3l|229593|golgi phosphoprotein 3-like
mm9_v1_chr8_+_96738448_96738479	0.10463	CDX1,2,4.p2	AK169693|Nup93|71805|nucleoporin 93
mm9_v1_chr3_+_67178016_67178018	0.104597	CDX1,2,4.p2	AK007292|Mlf1|17349|myeloid leukemia factor 1	AK133448|Mlf1|17349|myeloid leukemia factor 1	NM_001039543|Mlf1|17349|myeloid leukemia factor 1	NM_010801|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr2_+_174241304_174241382	0.10438	CDX1,2,4.p2	AJ238742|Th1l|57314|TH1-like homolog (Drosophila)	NM_020580|Th1l|57314|TH1-like homolog (Drosophila)	AK049418|Th1l|57314|TH1-like homolog (Drosophila)	BC006959|Th1l|57314|TH1-like homolog (Drosophila)	BC031747|Th1l|57314|TH1-like homolog (Drosophila)	AJ238743|Th1l|57314|TH1-like homolog (Drosophila)	AK159866|Th1l|57314|TH1-like homolog (Drosophila)	AK010360|Th1l|57314|TH1-like homolog (Drosophila)	AJ238741|Th1l|57314|TH1-like homolog (Drosophila)
mm9_v1_chr11_+_4795308_4795373	0.104072	CDX1,2,4.p2	AK040311|Thoc5|107829|THO complex 5	AK050734|Thoc5|107829|THO complex 5	NM_172438|Thoc5|107829|THO complex 5	BC039758|Thoc5|107829|THO complex 5	AK087099|Thoc5|107829|THO complex 5
mm9_v1_chr14_+_30781514_30781692	0.103956	CDX1,2,4.p2	NM_019979|Selk|80795|selenoprotein K	AK008419|Selk|80795|selenoprotein K	BC038049|Selk|80795|selenoprotein K	AK003206|Selk|80795|selenoprotein K	BC096677|Selk|80795|selenoprotein K	AK007523|Selk|80795|selenoprotein K	AK006674|Selk|80795|selenoprotein K	BC096044|Selk|80795|selenoprotein K
mm9_v1_chr1_-_184447549_184447745	0.103881	CDX1,2,4.p2	AF015038|Capn2|12334|calpain 2	AK150695|Capn2|12334|calpain 2	AK152094|Capn2|12334|calpain 2	AK152790|Capn2|12334|calpain 2	AK152994|Capn2|12334|calpain 2	AK052141|Capn2|12334|calpain 2	BC054726|Capn2|12334|calpain 2	NM_009794|Capn2|12334|calpain 2	AK154855|Capn2|12334|calpain 2	D38117|Capn2|12334|calpain 2	AK053832|Capn2|12334|calpain 2
mm9_v1_chr8_+_73053432_73053453	0.1038	CDX1,2,4.p2	AB154247|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr7_-_121261292_121261300	0.103768	CDX1,2,4.p2	AK011419|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	AK078870|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2	NM_025846|Rras2|66922|related RAS viral (r-ras) oncogene homolog 2
mm9_v1_chr3_-_5576086_5576166	0.103629	CDX1,2,4.p2	BC012404|Pxmp3|19302|peroxisomal membrane protein 3	AK151121|Pxmp3|19302|peroxisomal membrane protein 3	AK152331|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163304|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163305|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163306|Pxmp3|19302|peroxisomal membrane protein 3	NM_008994|Pxmp3|19302|peroxisomal membrane protein 3	AK146530|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163301|Pxmp3|19302|peroxisomal membrane protein 3
mm9_v1_chr11_-_97023157_97023169	0.103615	CDX1,2,4.p2	BC004096|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr11_-_26493610_26493704	0.103266	CDX1,2,4.p2	AK012664|Vrk2|69922|vaccinia related kinase 2	AK053297|Vrk2|69922|vaccinia related kinase 2	AK154485|Vrk2|69922|vaccinia related kinase 2
mm9_v1_chr11_-_55209320_55209338	0.103126	CDX1,2,4.p2	AK192259|Sparc|20692|secreted acidic cysteine rich glycoprotein
mm9_v1_chr19_-_6532339_6532383	0.103086	CDX1,2,4.p2	AK045662|Gm14964|100008567|predicted gene 14964
mm9_v1_chr10_+_21698470_21698479	0.103043	CDX1,2,4.p2	NM_001161847|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr3_+_145600974_145601015	0.102669	CDX1,2,4.p2	BC049577|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK010378|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	BC115465|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	NM_025555|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK019404|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK077565|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene
mm9_v1_chr4_-_107973656_107973675	0.102578	CDX1,2,4.p2	AK162646|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC117977|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC117978|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC139383|Zyg11b|414872|zyg-ll homolog B (C. elegans)	BC139384|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK145130|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK166031|Zyg11b|414872|zyg-ll homolog B (C. elegans)	AK166174|Zyg11b|414872|zyg-ll homolog B (C. elegans)
mm9_v1_chr3_-_95622554_95622875	0.102524	CDX1,2,4.p2	AK129150|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK154692|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	BC067054|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK083674|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK087157|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK012860|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	AK015972|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2	NM_001081293|Rprd2|75137|regulation of nuclear pre-mRNA domain containing 2
mm9_v1_chr2_-_151458220_151458249	0.102492	CDX1,2,4.p2	BC096541|Snph|241727|syntaphilin
mm9_v1_chr4_-_15872497_15872653	0.102345	CDX1,2,4.p2	CT010405|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	AK010473|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	AK004725|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	AK168490|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	AK015692|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	AK146003|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	AK002756|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	BC046972|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial	NM_026172|Decr1|67460|2,4-dienoyl CoA reductase 1, mitochondrial
mm9_v1_chr4_-_118905241_118905332	0.102278	CDX1,2,4.p2	AK158349|AU022252|230696|expressed sequence AU022252	AK167445|AU022252|230696|expressed sequence AU022252	BC035522|AU022252|230696|expressed sequence AU022252	AK082225|4930538K18Rik|75180|RIKEN cDNA 4930538K18 gene	BC089614|AU022252|230696|expressed sequence AU022252	NM_001012400|AU022252|230696|expressed sequence AU022252
mm9_v1_chr5_-_23289370_23289531	0.101974	CDX1,2,4.p2	BC138533|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	BC145316|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	AK173290|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	AK160849|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	NM_178403|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	BC008544|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)	AK142271|Pus7|78697|pseudouridylate synthase 7 homolog (S. cerevisiae)
mm9_v1_chr10_-_29920293_29920323	0.101454	CDX1,2,4.p2	BC050071|Cenpw|66311|centromere protein W
mm9_v1_chr9_-_63869857_63869865	0.101435	CDX1,2,4.p2	AK046602|Smad6|17130|MAD homolog 6 (Drosophila)	NM_008542|Smad6|17130|MAD homolog 6 (Drosophila)
mm9_v1_chr13_+_51740600_51740724	0.10088	CDX1,2,4.p2	NM_025415|Cks2|66197|CDC28 protein kinase regulatory subunit 2	AK166688|Cks2|66197|CDC28 protein kinase regulatory subunit 2	AK002451|Cks2|66197|CDC28 protein kinase regulatory subunit 2	AK004163|Cks2|66197|CDC28 protein kinase regulatory subunit 2	BC022647|Cks2|66197|CDC28 protein kinase regulatory subunit 2	BC094919|Cks2|66197|CDC28 protein kinase regulatory subunit 2
mm9_v1_chr19_+_46764392_46764432	0.100847	CDX1,2,4.p2	AK046524|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	NM_025563|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	AK008215|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	AK007626|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene	BC027506|2010012O05Rik|66439|RIKEN cDNA 2010012O05 gene
mm9_v1_chr15_-_74593991_74594015	0.100816	CDX1,2,4.p2	BC025135|Ly6d|17068|lymphocyte antigen 6 complex, locus D	NM_010742|Ly6d|17068|lymphocyte antigen 6 complex, locus D	X63782|Ly6d|17068|lymphocyte antigen 6 complex, locus D
mm9_v1_chr11_-_6333725_6333827	0.100688	CDX1,2,4.p2	AK178770|H2afv|77605|H2A histone family, member V
mm9_v1_chr8_+_125597668_125597810	0.100594	CDX1,2,4.p2	AK184026|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr11_+_87983066_87983095	0.100496	CDX1,2,4.p2	NM_001172099|Cuedc1|103841|CUE domain containing 1	BC131989|Cuedc1|103841|CUE domain containing 1	BC131991|Cuedc1|103841|CUE domain containing 1	BC145206|Cuedc1|103841|CUE domain containing 1
mm9_v1_chr2_-_110203298_110203336	0.100351	CDX1,2,4.p2	AK011548|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK012026|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr10_+_75931622_75931715	0.100263	CDX1,2,4.p2	AK122313|Mcm3ap|54387|minichromosome maintenance deficient 3 (S. cerevisiae) associated protein	AJ006590|Mcm3ap|54387|minichromosome maintenance deficient 3 (S. cerevisiae) associated protein	AK051901|Mcm3ap|54387|minichromosome maintenance deficient 3 (S. cerevisiae) associated protein	BC052452|Mcm3ap|54387|minichromosome maintenance deficient 3 (S. cerevisiae) associated protein	NM_019434|Mcm3ap|54387|minichromosome maintenance deficient 3 (S. cerevisiae) associated protein
mm9_v1_chr1_-_172145380_172145502	0.0999844	CDX1,2,4.p2	Y10725|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr1_-_154725297_154725297	0.0998065	CDX1,2,4.p2	AK129101|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_001160257|Smg7|226517|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr10_-_127999933_127999966	0.0997864	CDX1,2,4.p2	AK205907|Pa2g4|18813|proliferation-associated 2G4	AK207779|Pa2g4|18813|proliferation-associated 2G4
mm9_v1_chr1_-_180264067_180264092	0.0990894	CDX1,2,4.p2	AK190289|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr3_-_88262982_88263022	0.0990593	CDX1,2,4.p2	NM_001163490|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr11_-_6171453_6171670	0.0990026	CDX1,2,4.p2	AK003613|Tmed4|103694|transmembrane emp24 protein transport domain containing 4
mm9_v1_chr14_+_122580904_122580944	0.0988627	CDX1,2,4.p2	NM_029556|Clybl|69634|citrate lyase beta like	BC023398|Clybl|69634|citrate lyase beta like	AK009345|Clybl|69634|citrate lyase beta like	AF428254|Clybl|69634|citrate lyase beta like
mm9_v1_chr8_+_82235708_82235749	0.0987405	CDX1,2,4.p2	BC031460|Anapc10|68999|anaphase promoting complex subunit 10	NM_026904|Anapc10|68999|anaphase promoting complex subunit 10	AK219569|Anapc10|68999|anaphase promoting complex subunit 10	AK041373|Anapc10|68999|anaphase promoting complex subunit 10
mm9_v1_chrM_+_7009_7016	0.0987224	CDX1,2,4.p2	AF378830|COX2|17709|cytochrome c oxidase subunit II	AK131586|COX2|17709|cytochrome c oxidase subunit II
mm9_v1_chr17_-_45736533_45736548	0.0986125	CDX1,2,4.p2	AK050089|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr17_-_24832880_24833058	0.0985685	CDX1,2,4.p2	AF148688|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	AB041561|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)
mm9_v1_chr14_+_56097682_56097776	0.0980109	CDX1,2,4.p2	AB045132|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK018788|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK146988|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC003484|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr7_-_38804503_38804582	0.0980041	CDX1,2,4.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr15_+_81725666_81725708	0.0979067	CDX1,2,4.p2	AK188036|Aco2|11429|aconitase 2, mitochondrial	AK213382|Aco2|11429|aconitase 2, mitochondrial
mm9_v1_chr2_-_28438389_28438521	0.0977657	CDX1,2,4.p2	AK045419|Gtf3c5|70239|general transcription factor IIIC, polypeptide 5
mm9_v1_chr3_-_103541868_103541874	0.097738	CDX1,2,4.p2	BC005485|Olfml3|99543|olfactomedin-like 3
mm9_v1_chr15_+_80453912_80453951	0.0977139	CDX1,2,4.p2	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr16_-_85455370_85455468	0.0972928	CDX1,2,4.p2	
mm9_v1_chr12_-_102267159_102267268	0.0972788	CDX1,2,4.p2	AY339881|Ccdc88c|68339|coiled-coil domain containing 88C	NM_026681|Ccdc88c|68339|coiled-coil domain containing 88C	BC043115|Ccdc88c|68339|coiled-coil domain containing 88C	BC063255|Ccdc88c|68339|coiled-coil domain containing 88C
mm9_v1_chr1_-_176851918_176851937	0.0971322	CDX1,2,4.p2	AK161827|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	BC079905|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr15_+_9001154_9001214	0.0971072	CDX1,2,4.p2	BC115776|1110020G09Rik|68646|RIKEN cDNA 1110020G09 gene
mm9_v1_chr3_-_94937886_94937954	0.0970525	CDX1,2,4.p2	BC028867|Scnm1|69269|sodium channel modifier 1	AK013948|Scnm1|69269|sodium channel modifier 1	NM_001163573|Scnm1|69269|sodium channel modifier 1	NM_027013|Scnm1|69269|sodium channel modifier 1
mm9_v1_chr12_+_80398268_80398337	0.0969992	CDX1,2,4.p2	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chrX_+_136014905_136015005	0.0967578	CDX1,2,4.p2	AK171459|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	NM_175326|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK155588|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK052376|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC112416|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC113128|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene
mm9_v1_chr9_-_15105965_15105999	0.0967427	CDX1,2,4.p2	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr11_-_55223449_55223485	0.0964691	CDX1,2,4.p2	CT010306|Sparc|20692|secreted acidic cysteine rich glycoprotein
mm9_v1_chr5_+_12383165_12383165	0.0963964	CDX1,2,4.p2	AK052671|Sema3d|108151|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	NM_028882|Sema3d|108151|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
mm9_v1_chr5_-_110698902_110698941	0.0963697	CDX1,2,4.p2	AK146216|Pgam5|72542|phosphoglycerate mutase family member 5	NM_001163538|Pgam5|72542|phosphoglycerate mutase family member 5	NM_028273|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr19_-_12841737_12842025	0.096279	CDX1,2,4.p2	AK018620|Zfp91|109910|zinc finger protein 91	AK012081|Zfp91|109910|zinc finger protein 91
mm9_v1_chr6_+_83065466_83065564	0.0961724	CDX1,2,4.p2	AK144946|Mogs|57377|mannosyl-oligosaccharide glucosidase	BC051949|Mogs|57377|mannosyl-oligosaccharide glucosidase	NM_020619|Mogs|57377|mannosyl-oligosaccharide glucosidase	AK157286|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr4_+_141000576_141000628	0.095946	CDX1,2,4.p2	NM_009541|Zbtb17|22642|zinc finger and BTB domain containing 17	U14556|Zbtb17|22642|zinc finger and BTB domain containing 17	AK051971|Zbtb17|22642|zinc finger and BTB domain containing 17	U22396|Zbtb17|22642|zinc finger and BTB domain containing 17	BC060055|Zbtb17|22642|zinc finger and BTB domain containing 17	AK134251|Zbtb17|22642|zinc finger and BTB domain containing 17
mm9_v1_chr8_+_56040080_56040120	0.0958847	CDX1,2,4.p2	NM_153581|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr14_-_103379725_103379759	0.0957063	CDX1,2,4.p2	AK086988|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK032276|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr5_-_72559220_72559438	0.0956433	CDX1,2,4.p2	AK017777|Commd8|27784|COMM domain containing 8	AK013015|Commd8|27784|COMM domain containing 8	AK170011|Commd8|27784|COMM domain containing 8	AK013371|Commd8|27784|COMM domain containing 8	BC098183|Commd8|27784|COMM domain containing 8	AK158078|Commd8|27784|COMM domain containing 8	AK009275|Commd8|27784|COMM domain containing 8	AK151560|Commd8|27784|COMM domain containing 8	AK012653|Commd8|27784|COMM domain containing 8	AK077934|Commd8|27784|COMM domain containing 8	NM_178599|Commd8|27784|COMM domain containing 8
mm9_v1_chr7_-_135078992_135079041	0.0955517	CDX1,2,4.p2	AK021185|Prss36|77613|protease, serine, 36
mm9_v1_chr10_-_62254998_62255005	0.0954506	CDX1,2,4.p2	AF465615|Ccar1|67500|cell division cycle and apoptosis regulator 1	AK012111|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC060130|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC039939|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chr11_+_53270706_53270763	0.0952511	CDX1,2,4.p2	NM_027917|Shroom1|71774|shroom family member 1	BC005761|Shroom1|71774|shroom family member 1	AK035462|Shroom1|71774|shroom family member 1	AK085693|Shroom1|71774|shroom family member 1
mm9_v1_chr15_+_85690136_85690174	0.0946801	CDX1,2,4.p2	AK012870|Gtse1|29870|G two S phase expressed protein 1	NM_001168672|Gtse1|29870|G two S phase expressed protein 1	AK081582|Gtse1|29870|G two S phase expressed protein 1
mm9_v1_chr4_-_43666412_43666469	0.0945746	CDX1,2,4.p2	AK132968|Spag8|433700|sperm associated antigen 8	AY769082|Spag8|433700|sperm associated antigen 8	NM_001007463|Spag8|433700|sperm associated antigen 8	BC150868|Spag8|433700|sperm associated antigen 8
mm9_v1_chr19_+_10257363_10257524	0.0942647	CDX1,2,4.p2	NM_146094|Fads1|76267|fatty acid desaturase 1	BC026831|Fads1|76267|fatty acid desaturase 1	AK154367|Fads1|76267|fatty acid desaturase 1	BC022139|Fads1|76267|fatty acid desaturase 1	BC026848|Fads1|76267|fatty acid desaturase 1	AB072976|Fads1|76267|fatty acid desaturase 1	AK080706|Fads1|76267|fatty acid desaturase 1	AF061504|Fads1|76267|fatty acid desaturase 1	AK083959|Fads1|76267|fatty acid desaturase 1	BC063053|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr8_-_91568060_91568092	0.0939269	CDX1,2,4.p2	BC062937|Sall1|58198|sal-like 1 (Drosophila)	NM_021390|Sall1|58198|sal-like 1 (Drosophila)
mm9_v1_chr5_-_135870365_135870452	0.0938459	CDX1,2,4.p2	AF516680|Pom121|107939|nuclear pore membrane protein 121	BC053101|Pom121|107939|nuclear pore membrane protein 121	AK154473|Pom121|107939|nuclear pore membrane protein 121	NM_148932|Pom121|107939|nuclear pore membrane protein 121
mm9_v1_chr13_-_21494493_21494508	0.0938075	CDX1,2,4.p2	AK220177|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3
mm9_v1_chr7_+_29225955_29226034	0.0938033	CDX1,2,4.p2	AK009967|Gmfg|63986|glia maturation factor, gamma	NM_001039192|Gmfg|63986|glia maturation factor, gamma	AB003588|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr17_+_22099525_22099724	0.0933259	CDX1,2,4.p2	AK036434|Zfp943|74670|zinc finger prtoein 943	NM_001025373|Zfp943|74670|zinc finger prtoein 943	AK015297|Zfp943|74670|zinc finger prtoein 943	BC038865|Zfp943|74670|zinc finger prtoein 943	BC066031|Zfp943|74670|zinc finger prtoein 943
mm9_v1_chr13_-_67033920_67034045	0.0928959	CDX1,2,4.p2	BC085282|Mterfd1|66410|MTERF domain containing 1	AK034645|Mterfd1|66410|MTERF domain containing 1	BC025173|Mterfd1|66410|MTERF domain containing 1	AK002299|Mterfd1|66410|MTERF domain containing 1	AK011934|Mterfd1|66410|MTERF domain containing 1	AK010525|Mterfd1|66410|MTERF domain containing 1	NM_025547|Mterfd1|66410|MTERF domain containing 1
mm9_v1_chr4_+_6321713_6321979	0.0927235	CDX1,2,4.p2	AK213873|Sdcbp|53378|syndecan binding protein
mm9_v1_chr11_-_40546863_40546938	0.0926984	CDX1,2,4.p2	AK163410|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AF079222|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK020144|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK164410|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	BC021427|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK041617|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK164597|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AF031932|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	AK143123|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)	NM_013552|Hmmr|15366|hyaluronan mediated motility receptor (RHAMM)
mm9_v1_chr15_+_12808445_12808493	0.0925866	CDX1,2,4.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr5_-_30460623_30460706	0.092317	CDX1,2,4.p2	AK179416|Hadha|97212|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	AK188264|Hadha|97212|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	AK217494|Hadha|97212|hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit
mm9_v1_chr7_+_27814096_27814122	0.0921077	CDX1,2,4.p2	BC018356|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	NM_133657|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	BC094017|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	L06463|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12
mm9_v1_chr11_+_100442602_100442668	0.0920353	CDX1,2,4.p2	AK190081|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK211066|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr5_-_21371421_21371421	0.0920295	CDX1,2,4.p2	AF529192|Slc26a5|80979|solute carrier family 26, member 5	NM_030727|Slc26a5|80979|solute carrier family 26, member 5
mm9_v1_chr1_-_36301093_36301156	0.0915679	CDX1,2,4.p2	BC062936|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	BC068283|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	AK050532|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	NM_198899|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1
mm9_v1_chr6_+_56952293_56952348	0.0915565	CDX1,2,4.p2	BC125532|Vmn1r6|171193|vomeronasal 1 receptor 6	BC125534|Vmn1r6|171193|vomeronasal 1 receptor 6	NM_134175|Vmn1r6|171193|vomeronasal 1 receptor 6
mm9_v1_chr16_-_32003226_32003372	0.0913129	CDX1,2,4.p2	AK158338|Senp5|320213|SUMO/sentrin specific peptidase 5	AY522918|Senp5|320213|SUMO/sentrin specific peptidase 5	BC080830|Senp5|320213|SUMO/sentrin specific peptidase 5	AK043171|Senp5|320213|SUMO/sentrin specific peptidase 5	AK042087|Senp5|320213|SUMO/sentrin specific peptidase 5	AK028177|Senp5|320213|SUMO/sentrin specific peptidase 5	NM_177103|Senp5|320213|SUMO/sentrin specific peptidase 5
mm9_v1_chr9_+_45715013_45715102	0.0912513	CDX1,2,4.p2	AK165389|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK151980|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK148416|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	BC007322|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	U48830|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr19_+_34365165_34365185	0.0912246	CDX1,2,4.p2	AK086933|Fas|14102|Fas (TNF receptor superfamily member 6)	BC061160|Fas|14102|Fas (TNF receptor superfamily member 6)
mm9_v1_chr13_-_115078961_115078988	0.0908032	CDX1,2,4.p2	AK035175|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr5_-_105411580_105411736	0.0907601	CDX1,2,4.p2	BC029095|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK037614|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AF324242|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK051880|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK156626|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138773|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	BC138772|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	NM_030239|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3	AK030831|Abcg3|27405|ATP-binding cassette, sub-family G (WHITE), member 3
mm9_v1_chr16_+_31948631_31948724	0.0906952	CDX1,2,4.p2	NM_026554|Ncbp2|68092|nuclear cap binding protein subunit 2	AK008980|Ncbp2|68092|nuclear cap binding protein subunit 2	AK078181|Ncbp2|68092|nuclear cap binding protein subunit 2	AK147027|Ncbp2|68092|nuclear cap binding protein subunit 2	AK012659|Ncbp2|68092|nuclear cap binding protein subunit 2	AK014016|Ncbp2|68092|nuclear cap binding protein subunit 2	AK135597|Ncbp2|68092|nuclear cap binding protein subunit 2	AK077841|Ncbp2|68092|nuclear cap binding protein subunit 2	BC118926|Ncbp2|68092|nuclear cap binding protein subunit 2
mm9_v1_chr18_-_6240993_6241298	0.0906626	CDX1,2,4.p2	AK185672|Kif5b|16573|kinesin family member 5B	AK177424|Kif5b|16573|kinesin family member 5B	L27153|Kif5b|16573|kinesin family member 5B
mm9_v1_chr11_+_108256590_108256640	0.0901742	CDX1,2,4.p2	Y11356|Apoh|11818|apolipoprotein H	NM_013475|Apoh|11818|apolipoprotein H	BC011037|Apoh|11818|apolipoprotein H	BC019811|Apoh|11818|apolipoprotein H	AK010926|Apoh|11818|apolipoprotein H	S70439|Apoh|11818|apolipoprotein H	BC053338|Apoh|11818|apolipoprotein H	D10056|Apoh|11818|apolipoprotein H
mm9_v1_chr2_-_104582953_104582979	0.0901681	CDX1,2,4.p2	BC013499|Depdc7|211896|DEP domain containing 7	NM_144804|Depdc7|211896|DEP domain containing 7	AK144066|Depdc7|211896|DEP domain containing 7	AK165504|Depdc7|211896|DEP domain containing 7	AK134830|Depdc7|211896|DEP domain containing 7	AK162086|Depdc7|211896|DEP domain containing 7	AK162218|Depdc7|211896|DEP domain containing 7
mm9_v1_chr17_+_37095536_37095635	0.0899822	CDX1,2,4.p2	BC027007|Znrd1as|76416|ZNRD1 antisense RNA	NM_029602|Znrd1as|76416|ZNRD1 antisense RNA	AK006236|Znrd1as|76416|ZNRD1 antisense RNA	AK161503|Znrd1as|76416|ZNRD1 antisense RNA
mm9_v1_chr15_-_98493302_98493343	0.0897297	CDX1,2,4.p2	AK014820|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	BC049928|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	NM_001080981|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	AK014272|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
mm9_v1_chr16_+_49906392_49906404	0.0895224	CDX1,2,4.p2	
mm9_v1_chr6_+_88052091_88052141	0.0893517	CDX1,2,4.p2	
mm9_v1_chr13_+_34967355_34967379	0.0890735	CDX1,2,4.p2	NM_013830|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK165391|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr1_+_87801908_87801932	0.0882292	CDX1,2,4.p2	AK194904|Itm2c|64294|integral membrane protein 2C	AK207985|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr3_+_30691948_30691983	0.0879334	CDX1,2,4.p2	AK013922|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr5_-_134932407_134932628	0.0877414	CDX1,2,4.p2	BC057091|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC058964|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF247161|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497637|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497638|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497639|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343348|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343351|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497640|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK078488|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343350|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497642|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF343349|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF497641|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK051310|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF260133|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030287|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030288|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AY030289|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AF257475|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	AK147196|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	BC050822|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081462|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081463|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081464|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081466|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081467|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081468|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081469|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_001081470|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1	NM_020331|Gtf2ird1|57080|general transcription factor II I repeat domain-containing 1
mm9_v1_chr8_+_47619706_47619715	0.0875699	CDX1,2,4.p2	
mm9_v1_chr2_-_124949149_124949396	0.0875212	CDX1,2,4.p2	BC060946|Myef2|17876|myelin basic protein expression factor 2, repressor	AK129336|Myef2|17876|myelin basic protein expression factor 2, repressor	AK142363|Myef2|17876|myelin basic protein expression factor 2, repressor	AK143230|Myef2|17876|myelin basic protein expression factor 2, repressor	AK048404|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162417|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_001162418|Myef2|17876|myelin basic protein expression factor 2, repressor	NM_010852|Myef2|17876|myelin basic protein expression factor 2, repressor	AK012133|Myef2|17876|myelin basic protein expression factor 2, repressor
mm9_v1_chr8_-_85297983_85298058	0.0873326	CDX1,2,4.p2	BC030675|Zfp330|30932|zinc finger protein 330	BC008086|Zfp330|30932|zinc finger protein 330	NM_145600|Zfp330|30932|zinc finger protein 330	AK050534|Zfp330|30932|zinc finger protein 330	AK086617|Zfp330|30932|zinc finger protein 330	BC083081|Zfp330|30932|zinc finger protein 330
mm9_v1_chr11_+_77029770_77029932	0.0873055	CDX1,2,4.p2	AB099288|Ssh2|237860|slingshot homolog 2 (Drosophila)	NM_177710|Ssh2|237860|slingshot homolog 2 (Drosophila)	BC141392|Ssh2|237860|slingshot homolog 2 (Drosophila)	BC141393|Ssh2|237860|slingshot homolog 2 (Drosophila)
mm9_v1_chr2_-_84490666_84490763	0.0866128	CDX1,2,4.p2	NM_001085453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC046589|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr7_-_35005925_35005938	0.0861508	CDX1,2,4.p2	AK194043|Gpi1|14751|glucose phosphate isomerase 1	AK196108|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr14_-_109313333_109313374	0.0861312	CDX1,2,4.p2	AK173296|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr18_+_25224729_25224737	0.0858069	CDX1,2,4.p2	BC060607|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr12_+_30622876_30622919	0.0856719	CDX1,2,4.p2	AK142872|Pxdn|69675|peroxidasin homolog (Drosophila)	NM_181395|Pxdn|69675|peroxidasin homolog (Drosophila)	BC150789|Pxdn|69675|peroxidasin homolog (Drosophila)	AK054255|Pxdn|69675|peroxidasin homolog (Drosophila)	AK163597|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr10_-_53349799_53349820	0.085565	CDX1,2,4.p2	AK018494|Mcm9|71567|minichromosome maintenance complex component 9
mm9_v1_chrM_+_6139_6178	0.0855502	CDX1,2,4.p2	
mm9_v1_chr8_+_73053287_73053425	0.0855132	CDX1,2,4.p2	BC003739|Fkbp8|14232|FK506 binding protein 8	AY225340|Fkbp8|14232|FK506 binding protein 8	AK216136|Fkbp8|14232|FK506 binding protein 8	AF030635|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr6_+_73221007_73221091	0.0854926	CDX1,2,4.p2	AK204482|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr18_-_43532846_43532925	0.085478	CDX1,2,4.p2	AK161509|Dpysl3|22240|dihydropyrimidinase-like 3	AK077000|Dpysl3|22240|dihydropyrimidinase-like 3	AK133040|Dpysl3|22240|dihydropyrimidinase-like 3	NM_001136086|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr11_-_61680770_61680775	0.0847306	CDX1,2,4.p2	AK138613|A530017D24Rik|103880|RIKEN cDNA A530017D24 gene
mm9_v1_chr11_-_101139357_101139490	0.0846804	CDX1,2,4.p2	
mm9_v1_chr11_-_106646516_106646611	0.0845626	CDX1,2,4.p2	AK219348|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr16_-_56690646_56690662	0.0845423	CDX1,2,4.p2	
mm9_v1_chr4_-_154735351_154735519	0.0844944	CDX1,2,4.p2	BC139761|Prkcz|18762|protein kinase C, zeta	M94632|Prkcz|18762|protein kinase C, zeta	AK165750|Prkcz|18762|protein kinase C, zeta	NM_008860|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr8_+_54597026_54597158	0.0844613	CDX1,2,4.p2	NM_001005847|Aga|11593|aspartylglucosaminidase	BC132227|Aga|11593|aspartylglucosaminidase	BC132229|Aga|11593|aspartylglucosaminidase	BC145297|Aga|11593|aspartylglucosaminidase	S81393|Aga|11593|aspartylglucosaminidase	BC048230|Aga|11593|aspartylglucosaminidase
mm9_v1_chr8_-_72438496_72438584	0.0842717	CDX1,2,4.p2	BC019178|Gatad2a|234366|GATA zinc finger domain containing 2A	AK189334|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr18_+_20823908_20823925	0.0841694	CDX1,2,4.p2	AK018701|Ttr|22139|transthyretin	AK014454|Ttr|22139|transthyretin	AK075588|Ttr|22139|transthyretin	BC086926|Ttr|22139|transthyretin	D89076|Ttr|22139|transthyretin	X03351|Ttr|22139|transthyretin	AK050155|Ttr|22139|transthyretin	BC032069|Ttr|22139|transthyretin
mm9_v1_chr2_+_152695336_152695453	0.0841621	CDX1,2,4.p2	AK167030|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)	AK011311|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)
mm9_v1_chr19_+_56622750_56622913	0.0840237	CDX1,2,4.p2	AK033384|Nhlrc2|66866|NHL repeat containing 2	NM_025811|Nhlrc2|66866|NHL repeat containing 2	BC095956|Nhlrc2|66866|NHL repeat containing 2	BC138190|Nhlrc2|66866|NHL repeat containing 2	BC138191|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr2_-_163298253_163298393	0.0836072	CDX1,2,4.p2	AK036997|Fitm2|228859|fat storage-inducing transmembrane protein 2	AK040900|Fitm2|228859|fat storage-inducing transmembrane protein 2	BC064032|Fitm2|228859|fat storage-inducing transmembrane protein 2	AK052945|Fitm2|228859|fat storage-inducing transmembrane protein 2	AK163611|Fitm2|228859|fat storage-inducing transmembrane protein 2	BC138522|Fitm2|228859|fat storage-inducing transmembrane protein 2	BC138532|Fitm2|228859|fat storage-inducing transmembrane protein 2	AK054016|Fitm2|228859|fat storage-inducing transmembrane protein 2	BC090994|Fitm2|228859|fat storage-inducing transmembrane protein 2	AK043244|Fitm2|228859|fat storage-inducing transmembrane protein 2	AK080142|Fitm2|228859|fat storage-inducing transmembrane protein 2	NM_173397|Fitm2|228859|fat storage-inducing transmembrane protein 2
mm9_v1_chrX_-_133511388_133511422	0.0833575	CDX1,2,4.p2	AK029707|Tmsb15l|399591|thymosin beta 15b like	NM_207267|Tmsb15l|399591|thymosin beta 15b like	NM_001081983|Tmsb15b1|666244|thymosin beta 15b1
mm9_v1_chr10_+_39332934_39333058	0.0833423	CDX1,2,4.p2	AK037407|Traf3ip2|103213|TRAF3 interacting protein 2	BC138234|Traf3ip2|103213|TRAF3 interacting protein 2	BC138235|Traf3ip2|103213|TRAF3 interacting protein 2	AK031556|Traf3ip2|103213|TRAF3 interacting protein 2	AK098107|Traf3ip2|103213|TRAF3 interacting protein 2	BC096483|Traf3ip2|103213|TRAF3 interacting protein 2
mm9_v1_chr12_-_113205152_113205166	0.0832523	CDX1,2,4.p2	BC055712|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr10_+_127521417_127521506	0.0832335	CDX1,2,4.p2	AK179339|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK205339|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK203332|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr7_-_31011907_31012028	0.0829999	CDX1,2,4.p2	AK214432|Tbcb|66411|tubulin folding cofactor B
mm9_v1_chr2_+_13504271_13504305	0.0827746	CDX1,2,4.p2	
mm9_v1_chr7_+_29501805_29501891	0.0826929	CDX1,2,4.p2	NM_015796|Fbxo17|50760|F-box protein 17	BC026470|Fbxo17|50760|F-box protein 17	AK133408|Fbxo17|50760|F-box protein 17	AK134284|Fbxo17|50760|F-box protein 17	AF176532|Fbxo17|50760|F-box protein 17
mm9_v1_chr5_+_90890764_90890776	0.0826793	CDX1,2,4.p2	AK050644|Alb|11657|albumin
mm9_v1_chr2_+_162843166_162843193	0.0826752	CDX1,2,4.p2	AK167194|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)
mm9_v1_chr15_+_82930619_82930668	0.0825272	CDX1,2,4.p2	NM_023475|Serhl|68607|serine hydrolase-like	AJ245737|Serhl|68607|serine hydrolase-like	AJ251200|Serhl|68607|serine hydrolase-like	BC064069|Serhl|68607|serine hydrolase-like
mm9_v1_chr12_+_88784853_88784880	0.0824424	CDX1,2,4.p2	AK007699|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC116739|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC116741|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC048513|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	AK028746|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC065396|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	AJ293625|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene	BC100567|1810035L17Rik|380773|RIKEN cDNA 1810035L17 gene
mm9_v1_chr10_+_87663839_87663973	0.0823161	CDX1,2,4.p2	AK013835|Ccdc53|67282|coiled-coil domain containing 53	AK158822|Ccdc53|67282|coiled-coil domain containing 53	NM_001122960|Ccdc53|67282|coiled-coil domain containing 53	NM_026070|Ccdc53|67282|coiled-coil domain containing 53	NM_027487|Ccdc53|67282|coiled-coil domain containing 53	AK017732|Ccdc53|67282|coiled-coil domain containing 53	AK004206|Ccdc53|67282|coiled-coil domain containing 53	AK028599|Ccdc53|67282|coiled-coil domain containing 53	AK009358|Ccdc53|67282|coiled-coil domain containing 53	BC029256|Ccdc53|67282|coiled-coil domain containing 53
mm9_v1_chr4_-_147242501_147242654	0.0822759	CDX1,2,4.p2	BC017525|Miip|28010|migration and invasion inhibitory protein	AK133976|Miip|28010|migration and invasion inhibitory protein	AK170224|Miip|28010|migration and invasion inhibitory protein	BC024069|Miip|28010|migration and invasion inhibitory protein
mm9_v1_chr5_-_117838974_117839070	0.0821332	CDX1,2,4.p2	AK011931|Rfc5|72151|replication factor C (activator 1) 5	AK171372|Rfc5|72151|replication factor C (activator 1) 5	BC089001|Rfc5|72151|replication factor C (activator 1) 5	NM_028128|Rfc5|72151|replication factor C (activator 1) 5	AK011489|Rfc5|72151|replication factor C (activator 1) 5	AK150036|Rfc5|72151|replication factor C (activator 1) 5	AK170211|Rfc5|72151|replication factor C (activator 1) 5
mm9_v1_chr13_-_74480876_74480941	0.0819012	CDX1,2,4.p2	AF095938|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	DQ402975|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK216171|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK209906|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	AK215982|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr9_+_14664653_14664697	0.0817926	CDX1,2,4.p2	AK035356|Gpr83|14608|G protein-coupled receptor 83	AK041527|Gpr83|14608|G protein-coupled receptor 83	AK081276|Gpr83|14608|G protein-coupled receptor 83	M80481|Gpr83|14608|G protein-coupled receptor 83	NM_010287|Gpr83|14608|G protein-coupled receptor 83
mm9_v1_chr14_+_75855788_75855788	0.0816854	CDX1,2,4.p2	BC147762|Siah3|380918|seven in absentia homolog 3 (Drosophila)	BC147764|Siah3|380918|seven in absentia homolog 3 (Drosophila)	NM_001128093|Siah3|380918|seven in absentia homolog 3 (Drosophila)
mm9_v1_chr10_-_126558207_126558220	0.0815543	CDX1,2,4.p2	NM_001171026|Os9|216440|amplified in osteosarcoma	NM_177614|Os9|216440|amplified in osteosarcoma
mm9_v1_chr3_+_144260300_144260351	0.0815168	CDX1,2,4.p2	AK205282|Sep15|93684|selenoprotein	AK213933|Sep15|93684|selenoprotein	AK218207|Sep15|93684|selenoprotein
mm9_v1_chr6_+_33922645_33922791	0.0812819	CDX1,2,4.p2	
mm9_v1_chr11_+_102297838_102297879	0.0810658	CDX1,2,4.p2	
mm9_v1_chr1_-_72905107_72905143	0.0809162	CDX1,2,4.p2	AK011683|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr15_+_101925801_101925989	0.0808644	CDX1,2,4.p2	AK217495|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr10_+_60938535_60938600	0.0807364	CDX1,2,4.p2	AK139384|Lrrc20|216011|leucine rich repeat containing 20	AK136380|Lrrc20|216011|leucine rich repeat containing 20	AK145920|Lrrc20|216011|leucine rich repeat containing 20	AK150142|Lrrc20|216011|leucine rich repeat containing 20	BC036304|Lrrc20|216011|leucine rich repeat containing 20	NM_153542|Lrrc20|216011|leucine rich repeat containing 20	AK150246|Lrrc20|216011|leucine rich repeat containing 20
mm9_v1_chr18_-_89063689_89063737	0.0806391	CDX1,2,4.p2	AK142069|Socs6|54607|suppressor of cytokine signaling 6	AK053803|Socs6|54607|suppressor of cytokine signaling 6	AK156591|Socs6|54607|suppressor of cytokine signaling 6
mm9_v1_chr17_-_13153182_13153211	0.0805514	CDX1,2,4.p2	AK013275|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2
mm9_v1_chr5_-_145962668_145962756	0.0799818	CDX1,2,4.p2	BC099448|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	BC141244|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	U62906|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	BC027512|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK153972|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK013258|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK009842|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	AK138775|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14	NM_023322|Zkscan14|67235|zinc finger with KRAB and SCAN domains 14
mm9_v1_chr7_+_117161896_117161938	0.0793978	CDX1,2,4.p2	AY316153|Ipo7|233726|importin 7	NM_181517|Ipo7|233726|importin 7
mm9_v1_chr5_-_114292548_114292630	0.0792416	CDX1,2,4.p2	
mm9_v1_chr1_-_95316709_95316785	0.0790536	CDX1,2,4.p2	
mm9_v1_chr12_+_16817770_16817770	0.0789856	CDX1,2,4.p2	NM_033270|E2f6|50496|E2F transcription factor 6
mm9_v1_chr4_+_148478238_148478288	0.0789748	CDX1,2,4.p2	AK039227|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_001025296|Dffa|13347|DNA fragmentation factor, alpha subunit	NM_010044|Dffa|13347|DNA fragmentation factor, alpha subunit	AK154488|Dffa|13347|DNA fragmentation factor, alpha subunit
mm9_v1_chr5_-_130731280_130731426	0.0789556	CDX1,2,4.p2	AK005079|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK019228|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK168847|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	BC003849|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	NM_023248|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK014648|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	X99668|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)
mm9_v1_chr10_-_114821398_114821490	0.0788919	CDX1,2,4.p2	BC027502|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK051198|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK009162|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK018577|Thap2|66816|THAP domain containing, apoptosis associated protein 2	AK081303|Thap2|66816|THAP domain containing, apoptosis associated protein 2	NM_025780|Thap2|66816|THAP domain containing, apoptosis associated protein 2
mm9_v1_chr1_+_62750471_62750778	0.0788687	CDX1,2,4.p2	AK153553|Nrp2|18187|neuropilin 2	BC057028|Nrp2|18187|neuropilin 2	BC098200|Nrp2|18187|neuropilin 2	AF483506|Nrp2|18187|neuropilin 2	AF483507|Nrp2|18187|neuropilin 2
mm9_v1_chr5_+_149114763_149114791	0.0788276	CDX1,2,4.p2	AK019985|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr18_+_35750406_35750586	0.078827	CDX1,2,4.p2	AK139050|Matr3|17184|matrin 3	AK084822|Matr3|17184|matrin 3	AK148059|Matr3|17184|matrin 3
mm9_v1_chr7_+_19967358_19967392	0.0787472	CDX1,2,4.p2	AK141692|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082323|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK145969|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082761|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	NM_007949|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	BC034517|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2
mm9_v1_chr7_+_135056028_135056042	0.0787197	CDX1,2,4.p2	AK029350|Myst1|67773|MYST histone acetyltransferase 1	AK146710|Myst1|67773|MYST histone acetyltransferase 1	AK003264|Myst1|67773|MYST histone acetyltransferase 1	AK132000|Myst1|67773|MYST histone acetyltransferase 1	NM_026370|Myst1|67773|MYST histone acetyltransferase 1	AK018002|Myst1|67773|MYST histone acetyltransferase 1	AK008418|Myst1|67773|MYST histone acetyltransferase 1	BC036284|Myst1|67773|MYST histone acetyltransferase 1
mm9_v1_chr10_+_98453513_98453709	0.0786271	CDX1,2,4.p2	AK053569|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK042547|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chrM_+_67_138	0.0785891	CDX1,2,4.p2	
mm9_v1_chr5_-_104508289_104508325	0.0784064	CDX1,2,4.p2	AK002996|Sparcl1|13602|SPARC-like 1
mm9_v1_chr6_-_119303490_119303640	0.0783212	CDX1,2,4.p2	AK003228|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr7_-_52068757_52068869	0.0782952	CDX1,2,4.p2	AK160085|Atf5|107503|activating transcription factor 5	AY024362|Atf5|107503|activating transcription factor 5
mm9_v1_chr11_-_106127908_106127956	0.0782822	CDX1,2,4.p2	AK216602|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr1_-_165243608_165243611	0.0782561	CDX1,2,4.p2	AK089006|Prrx1|18933|paired related homeobox 1
mm9_v1_chr6_+_113102884_113103027	0.07815	CDX1,2,4.p2	AK088328|Setd5|72895|SET domain containing 5
mm9_v1_chr7_-_118214471_118214595	0.0781305	CDX1,2,4.p2	AK153701|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr18_+_35966147_35966251	0.0780836	CDX1,2,4.p2	AK075844|Ube2d2|56550|ubiquitin-conjugating enzyme E2D 2
mm9_v1_chr1_-_171461510_171461594	0.0774274	CDX1,2,4.p2	AK010351|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK012011|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC020026|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK089939|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AF326732|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK044882|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK162249|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK132467|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_023284|Nuf2|66977|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr6_-_88824037_88824037	0.0773819	CDX1,2,4.p2	BC033384|Podxl2|319655|podocalyxin-like 2	NM_176973|Podxl2|319655|podocalyxin-like 2
mm9_v1_chr5_-_121822213_121822316	0.0768075	CDX1,2,4.p2	AK211451|Trafd1|231712|TRAF type zinc finger domain containing 1	AK212088|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr11_+_97699719_97699824	0.0766658	CDX1,2,4.p2	
mm9_v1_chr13_-_77230519_77230547	0.076351	CDX1,2,4.p2	BC083095|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr13_-_21532756_21532926	0.0763474	CDX1,2,4.p2	BC089360|Pgbd1|319207|piggyBac transposable element derived 1	BC059882|Pgbd1|319207|piggyBac transposable element derived 1	NM_001012311|Pgbd1|319207|piggyBac transposable element derived 1	NM_001162920|Pgbd1|319207|piggyBac transposable element derived 1	AK076559|Pgbd1|319207|piggyBac transposable element derived 1
mm9_v1_chr10_-_90579986_90580013	0.0762974	CDX1,2,4.p2	AK198800|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK190863|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK184040|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191542|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK191799|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194450|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK194768|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200191|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200546|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK200877|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK202780|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK203930|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK213202|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK215444|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK193469|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK196032|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr6_-_148719426_148719561	0.0761033	CDX1,2,4.p2	X67534|Ipo8|320727|importin 8
mm9_v1_chr11_-_102168258_102168260	0.0758944	CDX1,2,4.p2	AK014791|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	AK076512|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr15_-_60656465_60656634	0.0757341	CDX1,2,4.p2	AK139928|Fam84b|399603|family with sequence similarity 84, member B	NM_001162926|Fam84b|399603|family with sequence similarity 84, member B
mm9_v1_chr2_+_32218529_32218697	0.0755431	CDX1,2,4.p2	AK165687|Ciz1|68379|CDKN1A interacting zinc finger protein 1	AK137961|Ciz1|68379|CDKN1A interacting zinc finger protein 1
mm9_v1_chr1_-_53813191_53813277	0.0752376	CDX1,2,4.p2	
mm9_v1_chr11_+_96891270_96891328	0.0752292	CDX1,2,4.p2	AK075869|Scrn2|217140|secernin 2	BC021346|Scrn2|217140|secernin 2	BC010784|Scrn2|217140|secernin 2
mm9_v1_chr2_-_121332347_121332403	0.0751304	CDX1,2,4.p2	BC005728|Mfap1b|100034361|microfibrillar-associated protein 1B	AK012688|Mfap1a|67532|microfibrillar-associated protein 1A	AK014483|Mfap1a|67532|microfibrillar-associated protein 1A	AK077604|Mfap1a|67532|microfibrillar-associated protein 1A	AK088766|Mfap1a|67532|microfibrillar-associated protein 1A	AK032586|Mfap1a|67532|microfibrillar-associated protein 1A	AK050561|Mfap1a|67532|microfibrillar-associated protein 1A	AK161000|Mfap1a|67532|microfibrillar-associated protein 1A	NM_026220|Mfap1a|67532|microfibrillar-associated protein 1A	AK168801|Mfap1a|67532|microfibrillar-associated protein 1A
mm9_v1_chr11_-_5778204_5778260	0.0751053	CDX1,2,4.p2	BC003342|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit	Z72486|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit	AK013901|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit	NM_008894|Pold2|18972|polymerase (DNA directed), delta 2, regulatory subunit
mm9_v1_chr15_-_83082156_83082203	0.074889	CDX1,2,4.p2	AK149186|A4galt|239559|alpha 1,4-galactosyltransferase	AK162529|A4galt|239559|alpha 1,4-galactosyltransferase	AY371179|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001170954|A4galt|239559|alpha 1,4-galactosyltransferase	AK139833|A4galt|239559|alpha 1,4-galactosyltransferase	NM_001004150|A4galt|239559|alpha 1,4-galactosyltransferase
mm9_v1_chr7_-_16872094_16872145	0.0745292	CDX1,2,4.p2	AK134892|Ccdc9|243846|coiled-coil domain containing 9	NM_001136471|Ccdc9|243846|coiled-coil domain containing 9
mm9_v1_chrX_-_139401258_139401275	0.074284	CDX1,2,4.p2	AJ243485|Ammecr1|56068|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)	AK051736|Ammecr1|56068|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)	NM_019496|Ammecr1|56068|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)
mm9_v1_chr1_+_45368568_45368573	0.0742589	CDX1,2,4.p2	M18933|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr9_+_106724228_106724306	0.0742096	CDX1,2,4.p2	BC065119|Vprbp|321006|Vpr (HIV-1) binding protein	NM_001015507|Vprbp|321006|Vpr (HIV-1) binding protein
mm9_v1_chr8_+_80737195_80737240	0.0741129	CDX1,2,4.p2	AK006580|Ttc29|73301|tetratricopeptide repeat domain 29	BC048386|Ttc29|73301|tetratricopeptide repeat domain 29	NM_183096|Ttc29|73301|tetratricopeptide repeat domain 29
mm9_v1_chrX_-_50622974_50623027	0.0739258	CDX1,2,4.p2	AK036417|Fam122b|78755|family with sequence similarity 122, member B	AK044896|Fam122b|78755|family with sequence similarity 122, member B	NM_001166365|Fam122b|78755|family with sequence similarity 122, member B	NM_001166583|Fam122b|78755|family with sequence similarity 122, member B	NM_030167|Fam122b|78755|family with sequence similarity 122, member B
mm9_v1_chr11_-_53520771_53520798	0.0734858	CDX1,2,4.p2	BC058180|Rad50|19360|RAD50 homolog (S. cerevisiae)	U66887|Rad50|19360|RAD50 homolog (S. cerevisiae)
mm9_v1_chr3_+_84668066_84668066	0.0732453	CDX1,2,4.p2	BC066093|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_001177774|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr9_+_57770320_57770335	0.0730838	CDX1,2,4.p2	AK207788|Ubl7|69459|ubiquitin-like 7 (bone marrow stromal cell-derived)
mm9_v1_chr10_-_24555898_24556005	0.0730533	CDX1,2,4.p2	AY630402|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	BC117533|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	BC118512|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	BC006944|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	NM_134005|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3	AK132256|Enpp3|209558|ectonucleotide pyrophosphatase/phosphodiesterase 3
mm9_v1_chr11_+_81871333_81871447	0.0728542	CDX1,2,4.p2	NM_011330|Ccl11|20292|chemokine (C-C motif) ligand 11	AK009307|Ccl11|20292|chemokine (C-C motif) ligand 11	AK010146|Ccl11|20292|chemokine (C-C motif) ligand 11	U40672|Ccl11|20292|chemokine (C-C motif) ligand 11	BC027521|Ccl11|20292|chemokine (C-C motif) ligand 11	U26426|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128205|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128206|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128207|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128208|Ccl11|20292|chemokine (C-C motif) ligand 11	AF128209|Ccl11|20292|chemokine (C-C motif) ligand 11
mm9_v1_chr16_+_91373008_91373145	0.0727535	CDX1,2,4.p2	NM_001110498|Ifnar2|15976|interferon (alpha and beta) receptor 2	NM_010509|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK139169|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK010952|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK003185|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150386|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK152878|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK153317|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151474|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151777|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151493|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150597|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09864|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09865|Ifnar2|15976|interferon (alpha and beta) receptor 2
mm9_v1_chrX_-_163647057_163647080	0.0725409	CDX1,2,4.p2	BC018286|Tmsb4x|19241|thymosin, beta 4, X chromosome	X16053|Tmsb4x|19241|thymosin, beta 4, X chromosome
mm9_v1_chr12_+_107248419_107248492	0.0725208	CDX1,2,4.p2	BC016676|Vrk1|22367|vaccinia related kinase 1	NM_001029843|Vrk1|22367|vaccinia related kinase 1	NM_001029844|Vrk1|22367|vaccinia related kinase 1	NM_011705|Vrk1|22367|vaccinia related kinase 1	BC051072|Vrk1|22367|vaccinia related kinase 1
mm9_v1_chr8_+_13869640_13869740	0.0725026	CDX1,2,4.p2	NM_181854|Zfp828|101994|zinc finger protein 828	AK132164|Zfp828|101994|zinc finger protein 828	AK170835|Zfp828|101994|zinc finger protein 828	AK139963|Zfp828|101994|zinc finger protein 828	AK133990|Zfp828|101994|zinc finger protein 828	BC028991|Zfp828|101994|zinc finger protein 828	AK129444|Zfp828|101994|zinc finger protein 828
mm9_v1_chr12_-_100688283_100688306	0.0724509	CDX1,2,4.p2	NM_183186|Foxn3|71375|forkhead box N3	AK148970|Foxn3|71375|forkhead box N3
mm9_v1_chr4_-_3865501_3865606	0.0720958	CDX1,2,4.p2	BC139283|Plag1|56711|pleiomorphic adenoma gene 1	BC139285|Plag1|56711|pleiomorphic adenoma gene 1	AY574219|Plag1|56711|pleiomorphic adenoma gene 1	AK044405|Plag1|56711|pleiomorphic adenoma gene 1	NM_019969|Plag1|56711|pleiomorphic adenoma gene 1
mm9_v1_chr4_-_132352272_132352331	0.0720659	CDX1,2,4.p2	BC013712|BC013712|230787|cDNA sequence BC013712	AK150471|BC013712|230787|cDNA sequence BC013712	AK153536|BC013712|230787|cDNA sequence BC013712	NM_001033308|BC013712|230787|cDNA sequence BC013712	AK137465|BC013712|230787|cDNA sequence BC013712	AK149775|BC013712|230787|cDNA sequence BC013712	AK171009|BC013712|230787|cDNA sequence BC013712	AK171858|BC013712|230787|cDNA sequence BC013712	AK155536|BC013712|230787|cDNA sequence BC013712	BC151122|BC013712|230787|cDNA sequence BC013712	BC151126|BC013712|230787|cDNA sequence BC013712
mm9_v1_chr14_-_55224744_55224800	0.072037	CDX1,2,4.p2	BC029624|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene	BC034212|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene	NM_028890|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene	AK163117|4931414P19Rik|74359|RIKEN cDNA 4931414P19 gene
mm9_v1_chr13_+_4433567_4433656	0.071908	CDX1,2,4.p2	AK149458|Akr1c6|83702|aldo-keto reductase family 1, member C6	NM_030611|Akr1c6|83702|aldo-keto reductase family 1, member C6	BC056643|Akr1c6|83702|aldo-keto reductase family 1, member C6	D45850|Akr1c6|83702|aldo-keto reductase family 1, member C6
mm9_v1_chr8_-_67171692_67171792	0.0718672	CDX1,2,4.p2	U23184|Cpe|12876|carboxypeptidase E	X61232|Cpe|12876|carboxypeptidase E
mm9_v1_chr12_-_81213930_81214002	0.0717894	CDX1,2,4.p2	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr1_-_99558490_99558623	0.0716995	CDX1,2,4.p2	AK162223|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK135656|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	BC019375|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	BC023951|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK152370|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	AK168549|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed	NM_133825|D1Ertd622e|52392|DNA segment, Chr 1, ERATO Doi 622, expressed
mm9_v1_chr19_+_11592938_11593140	0.0716982	CDX1,2,4.p2	AF237909|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	NM_027209|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK172345|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	BC027425|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK075671|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B	AK007613|Ms4a6b|69774|membrane-spanning 4-domains, subfamily A, member 6B
mm9_v1_chr1_-_99024782_99024879	0.0715565	CDX1,2,4.p2	BC139066|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	BC139067|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK132668|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK161249|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK016647|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	AK029505|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1	NM_028942|Slco6c1|74441|solute carrier organic anion transporter family, member 6c1
mm9_v1_chr1_-_165243777_165243829	0.0713993	CDX1,2,4.p2	NM_001025570|Prrx1|18933|paired related homeobox 1	NM_011127|Prrx1|18933|paired related homeobox 1	NM_175686|Prrx1|18933|paired related homeobox 1	U03873|Prrx1|18933|paired related homeobox 1	AK084387|Prrx1|18933|paired related homeobox 1	AK029347|Prrx1|18933|paired related homeobox 1
mm9_v1_chrX_-_6765768_6765839	0.0709463	CDX1,2,4.p2	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr16_-_8672226_8672229	0.0708956	CDX1,2,4.p2	AK150245|Carhsp1|52502|calcium regulated heat stable protein 1	BC086754|Carhsp1|52502|calcium regulated heat stable protein 1
mm9_v1_chr17_+_64245366_64245425	0.0708909	CDX1,2,4.p2	NM_001037997|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	U76762|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AF286537|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr8_+_87356149_87356307	0.0708769	CDX1,2,4.p2	AK002738|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK003314|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK019570|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK028227|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC061069|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	NM_183358|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK009723|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC022592|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm9_v1_chr5_+_34868420_34868522	0.0707357	CDX1,2,4.p2	AK155898|Sh3bp2|24055|SH3-domain binding protein 2	NM_011893|Sh3bp2|24055|SH3-domain binding protein 2	AK155103|Sh3bp2|24055|SH3-domain binding protein 2	BC010198|Sh3bp2|24055|SH3-domain binding protein 2	L14543|Sh3bp2|24055|SH3-domain binding protein 2	AK089455|Sh3bp2|24055|SH3-domain binding protein 2
mm9_v1_chr4_+_12067263_12067419	0.070638	CDX1,2,4.p2	NM_028226|Rbm12b|72397|RNA binding motif protein 12B	AK030861|Rbm12b|72397|RNA binding motif protein 12B
mm9_v1_chr7_+_19946564_19946602	0.0704627	CDX1,2,4.p2	AK170535|Ppp1r13l|333654|protein phosphatase 1, regulatory (inhibitor) subunit 13 like	NM_001010836|Ppp1r13l|333654|protein phosphatase 1, regulatory (inhibitor) subunit 13 like	AK146098|Ppp1r13l|333654|protein phosphatase 1, regulatory (inhibitor) subunit 13 like	AY869711|Ppp1r13l|333654|protein phosphatase 1, regulatory (inhibitor) subunit 13 like
mm9_v1_chr8_-_74009902_74009965	0.0703596	CDX1,2,4.p2	NM_001164679|Ano8|382014|anoctamin 8
mm9_v1_chr11_+_119134231_119134236	0.0702355	CDX1,2,4.p2	AK192147|Gaa|14387|glucosidase, alpha, acid	AK197764|Gaa|14387|glucosidase, alpha, acid	AK210560|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr4_-_6202747_6202782	0.0699588	CDX1,2,4.p2	BC130261|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050020|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050220|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050260|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	NM_007824|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050210|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1
mm9_v1_chr13_+_36209279_36209279	0.0698011	CDX1,2,4.p2	NM_001039189|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)	NM_024274|Fars2|69955|phenylalanine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr5_-_77640458_77640477	0.0696617	CDX1,2,4.p2	BC087876|Spink2|69982|serine peptidase inhibitor, Kazal type 2	BC048619|Spink2|69982|serine peptidase inhibitor, Kazal type 2	AK005709|Spink2|69982|serine peptidase inhibitor, Kazal type 2	NM_183284|Spink2|69982|serine peptidase inhibitor, Kazal type 2
mm9_v1_chr4_+_12016499_12016564	0.0696528	CDX1,2,4.p2	NM_198957|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	AK169895|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	BC080741|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene
mm9_v1_chr2_+_154515370_154515398	0.0696443	CDX1,2,4.p2	
mm9_v1_chr14_+_35147355_35147375	0.0696071	CDX1,2,4.p2	AK219236|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr9_-_21564723_21564737	0.0695387	CDX1,2,4.p2	AK031680|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	AK075950|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116238|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC116239|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	NM_026282|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC086683|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC056965|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	BC098472|Spc24|67629|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm9_v1_chr1_+_40381420_40381534	0.0695307	CDX1,2,4.p2	AK054530|Il1rl2|107527|interleukin 1 receptor-like 2	NM_133193|Il1rl2|107527|interleukin 1 receptor-like 2	AF284433|Il1rl2|107527|interleukin 1 receptor-like 2	BC117797|Il1rl2|107527|interleukin 1 receptor-like 2	AK085780|Il1rl2|107527|interleukin 1 receptor-like 2
mm9_v1_chr1_-_191511950_191512003	0.0695291	CDX1,2,4.p2	AK080758|Cenpf|108000|centromere protein F	AK029517|Cenpf|108000|centromere protein F	AK165236|Cenpf|108000|centromere protein F	NM_001081363|Cenpf|108000|centromere protein F
mm9_v1_chr1_-_16094459_16094513	0.069164	CDX1,2,4.p2	BC086786|Rpl7|19989|ribosomal protein L7	M85235|Rpl7|19989|ribosomal protein L7	BC025909|Rpl7|19989|ribosomal protein L7	BC096452|Rpl7|19989|ribosomal protein L7	BC051261|Rpl7|19989|ribosomal protein L7	AK168137|Rpl7|19989|ribosomal protein L7	AK017074|Rpl7|19989|ribosomal protein L7	AK135460|Rpl7|19989|ribosomal protein L7	AK150943|Rpl7|19989|ribosomal protein L7	AK167124|Rpl7|19989|ribosomal protein L7	AK168227|Rpl7|19989|ribosomal protein L7	M29016|Rpl7|19989|ribosomal protein L7	AK146219|Rpl7|19989|ribosomal protein L7	AK050656|Rpl7|19989|ribosomal protein L7	AK088291|Rpl7|19989|ribosomal protein L7	NM_011291|Rpl7|19989|ribosomal protein L7
mm9_v1_chr9_-_64188945_64189063	0.0690946	CDX1,2,4.p2	AK035357|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK032451|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	BC056939|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK173310|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK150851|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK151780|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	AK153433|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like	NM_001001295|Dis3l|213550|DIS3 mitotic control homolog (S. cerevisiae)-like
mm9_v1_chr1_+_91351373_91351428	0.0688188	CDX1,2,4.p2	AK147503|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_001037136|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	NM_178119|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK046523|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	AK129289|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr5_+_23900197_23900242	0.0687524	CDX1,2,4.p2	AK014688|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK076315|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK049152|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK166704|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK170334|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK014319|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK030624|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK038760|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr14_+_102239673_102239864	0.0686218	CDX1,2,4.p2	AK053129|Lmo7|380928|LIM domain only 7	AK143133|Lmo7|380928|LIM domain only 7	AK129231|Lmo7|380928|LIM domain only 7
mm9_v1_chr4_-_86873866_86873867	0.0682	CDX1,2,4.p2	NM_001110240|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC115867|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	BC116637|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr4_-_94223435_94223491	0.0681468	CDX1,2,4.p2	AK046647|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK076487|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK013385|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK032696|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	BC020067|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK150311|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK140382|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK171141|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160297|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160572|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	NM_026368|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene
mm9_v1_chr6_-_42643001_42643085	0.0680779	CDX1,2,4.p2	AK076242|Fam115a|77574|family with sequence similarity 115, member A	AK013025|Fam115a|77574|family with sequence similarity 115, member A	AK148593|Fam115a|77574|family with sequence similarity 115, member A	AK053509|Fam115a|77574|family with sequence similarity 115, member A	NM_029930|Fam115a|77574|family with sequence similarity 115, member A	BC031718|Fam115a|77574|family with sequence similarity 115, member A
mm9_v1_chr3_+_19857053_19857266	0.0680724	CDX1,2,4.p2	BC062957|Cp|12870|ceruloplasmin	NM_001042611|Cp|12870|ceruloplasmin	NM_007752|Cp|12870|ceruloplasmin	DQ336396|Cp|12870|ceruloplasmin	AK014835|Cp|12870|ceruloplasmin	AK043248|Cp|12870|ceruloplasmin	U49430|Cp|12870|ceruloplasmin	AK149523|Cp|12870|ceruloplasmin
mm9_v1_chr18_+_78546492_78546501	0.0680593	CDX1,2,4.p2	BC158101|Gm6133|620155|60S ribosomal protein L17 pseudogene
mm9_v1_chr3_+_60276971_60277044	0.0677106	CDX1,2,4.p2	AK153827|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr8_+_72356545_72356674	0.0674222	CDX1,2,4.p2	AK076968|Pbx4|80720|pre-B-cell leukemia homeobox 4	AK010506|Pbx4|80720|pre-B-cell leukemia homeobox 4	AK038786|Pbx4|80720|pre-B-cell leukemia homeobox 4	BC032875|Pbx4|80720|pre-B-cell leukemia homeobox 4	AJ300184|Pbx4|80720|pre-B-cell leukemia homeobox 4	NM_001024954|Pbx4|80720|pre-B-cell leukemia homeobox 4	AJ300183|Pbx4|80720|pre-B-cell leukemia homeobox 4
mm9_v1_chr15_+_78757171_78757220	0.0673647	CDX1,2,4.p2	BC002063|Lgals1|16852|lectin, galactose binding, soluble 1	X51903|Lgals1|16852|lectin, galactose binding, soluble 1	X15986|Lgals1|16852|lectin, galactose binding, soluble 1	X53067|Lgals1|16852|lectin, galactose binding, soluble 1	BC099479|Lgals1|16852|lectin, galactose binding, soluble 1	M57470|Lgals1|16852|lectin, galactose binding, soluble 1	M33214|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr11_-_97857486_97857496	0.0672727	CDX1,2,4.p2	BC065791|Arl5c|217151|ADP-ribosylation factor-like 5C	NM_207231|Arl5c|217151|ADP-ribosylation factor-like 5C	AK171194|Arl5c|217151|ADP-ribosylation factor-like 5C
mm9_v1_chr9_-_103125934_103125973	0.0671874	CDX1,2,4.p2	BC018573|Trf|22041|transferrin
mm9_v1_chr9_+_64026089_64026214	0.0671192	CDX1,2,4.p2	
mm9_v1_chr13_-_97419369_97419378	0.0670298	CDX1,2,4.p2	AK051107|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr5_-_77334487_77334538	0.0669151	CDX1,2,4.p2	BC094507|Aasdh|231326|aminoadipate-semialdehyde dehydrogenase	AK217387|Aasdh|231326|aminoadipate-semialdehyde dehydrogenase	AK038779|Aasdh|231326|aminoadipate-semialdehyde dehydrogenase	AK043807|Aasdh|231326|aminoadipate-semialdehyde dehydrogenase	AK136849|Aasdh|231326|aminoadipate-semialdehyde dehydrogenase	AK148405|Aasdh|231326|aminoadipate-semialdehyde dehydrogenase	NM_173765|Aasdh|231326|aminoadipate-semialdehyde dehydrogenase
mm9_v1_chr2_-_154900188_154900232	0.0665941	CDX1,2,4.p2	AK151097|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK153421|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK154302|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK169331|Ahcy|269378|S-adenosylhomocysteine hydrolase	NM_016661|Ahcy|269378|S-adenosylhomocysteine hydrolase
mm9_v1_chr19_-_10752469_10752560	0.0665277	CDX1,2,4.p2	AF240776|Pga5|58803|pepsinogen 5, group I	AK004109|Pga5|58803|pepsinogen 5, group I	AK168924|Pga5|58803|pepsinogen 5, group I	BC119523|Pga5|58803|pepsinogen 5, group I	AK053965|Pga5|58803|pepsinogen 5, group I	NM_021453|Pga5|58803|pepsinogen 5, group I
mm9_v1_chr9_-_21038160_21038293	0.0663122	CDX1,2,4.p2	
mm9_v1_chr6_-_83456775_83456962	0.0663096	CDX1,2,4.p2	AK167071|Dguok|27369|deoxyguanosine kinase	U90524|Dguok|27369|deoxyguanosine kinase	AJ133749|Dguok|27369|deoxyguanosine kinase	AY037862|Dguok|27369|deoxyguanosine kinase	BC012647|Dguok|27369|deoxyguanosine kinase	AK035281|Dguok|27369|deoxyguanosine kinase	BC094920|Dguok|27369|deoxyguanosine kinase	NM_001162521|Dguok|27369|deoxyguanosine kinase	NM_013764|Dguok|27369|deoxyguanosine kinase
mm9_v1_chr4_+_99654571_99654630	0.0661276	CDX1,2,4.p2	BC005617|Pgm2|72157|phosphoglucomutase 2
mm9_v1_chr19_+_12535268_12535270	0.0660552	CDX1,2,4.p2	AK030216|Mpeg1|17476|macrophage expressed gene 1	NM_010821|Mpeg1|17476|macrophage expressed gene 1
mm9_v1_chr17_-_33961403_33961506	0.0659558	CDX1,2,4.p2	U11248|Rps28|54127|ribosomal protein S28	BC010987|Rps28|54127|ribosomal protein S28	AK002919|Rps28|54127|ribosomal protein S28	BC090982|Rps28|54127|ribosomal protein S28	NM_016844|Rps28|54127|ribosomal protein S28	BC125644|Rps28|54127|ribosomal protein S28	BC125646|Rps28|54127|ribosomal protein S28
mm9_v1_chr15_+_85036434_85036600	0.0658249	CDX1,2,4.p2	AK083573|Fbln1|14114|fibulin 1	AK086451|Fbln1|14114|fibulin 1	NM_010180|Fbln1|14114|fibulin 1	X70854|Fbln1|14114|fibulin 1	AK035388|Fbln1|14114|fibulin 1	AK159646|Fbln1|14114|fibulin 1	AK085989|Fbln1|14114|fibulin 1	AK137511|Fbln1|14114|fibulin 1	EU543224|Fbln1|14114|fibulin 1	BC007140|Fbln1|14114|fibulin 1	AK183901|Fbln1|14114|fibulin 1	AK188770|Fbln1|14114|fibulin 1
mm9_v1_chr13_+_22135065_22135098	0.0655759	CDX1,2,4.p2	NM_178198|Hist1h2bj|319183|histone cluster 1, H2bj
mm9_v1_chr9_+_43875103_43875168	0.065532	CDX1,2,4.p2	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr3_-_108643390_108643483	0.0653484	CDX1,2,4.p2	AK152261|Stxbp3a|20912|syntaxin binding protein 3A	AK151466|Stxbp3a|20912|syntaxin binding protein 3A	AK155133|Stxbp3a|20912|syntaxin binding protein 3A	D30798|Stxbp3a|20912|syntaxin binding protein 3A	NM_011504|Stxbp3a|20912|syntaxin binding protein 3A	AK169799|Stxbp3a|20912|syntaxin binding protein 3A	BC094055|Stxbp3a|20912|syntaxin binding protein 3A	BC062901|Stxbp3a|20912|syntaxin binding protein 3A	AK050247|Stxbp3a|20912|syntaxin binding protein 3A	AK138609|Stxbp3a|20912|syntaxin binding protein 3A	DQ083989|Stxbp3b|619371|syntaxin-binding protein 3B
mm9_v1_chr19_+_9022763_9022826	0.0653012	CDX1,2,4.p2	AK003701|Mta2|23942|metastasis-associated gene family, member 2	AK186547|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr13_+_113450958_113450993	0.0652231	CDX1,2,4.p2	AK020109|Slc38a9|268706|solute carrier family 38, member 9	BC052361|Slc38a9|268706|solute carrier family 38, member 9	NM_178746|Slc38a9|268706|solute carrier family 38, member 9	AK044735|Slc38a9|268706|solute carrier family 38, member 9	AK043402|Slc38a9|268706|solute carrier family 38, member 9	AK034958|Slc38a9|268706|solute carrier family 38, member 9	AK039821|Slc38a9|268706|solute carrier family 38, member 9
mm9_v1_chr12_+_76409299_76409440	0.0650155	CDX1,2,4.p2	AK166409|Rhoj|80837|ras homolog gene family, member J	AK166480|Rhoj|80837|ras homolog gene family, member J	NM_023275|Rhoj|80837|ras homolog gene family, member J	BC054464|Rhoj|80837|ras homolog gene family, member J	BC043719|Rhoj|80837|ras homolog gene family, member J	AK159385|Rhoj|80837|ras homolog gene family, member J	AB060651|Rhoj|80837|ras homolog gene family, member J	AK042583|Rhoj|80837|ras homolog gene family, member J	AK003482|Rhoj|80837|ras homolog gene family, member J	AK003490|Rhoj|80837|ras homolog gene family, member J	AK156619|Rhoj|80837|ras homolog gene family, member J	AK171636|Rhoj|80837|ras homolog gene family, member J	AK157518|Rhoj|80837|ras homolog gene family, member J	BC024626|Rhoj|80837|ras homolog gene family, member J	BC060193|Rhoj|80837|ras homolog gene family, member J	AK185821|Rhoj|80837|ras homolog gene family, member J	AF309564|Rhoj|80837|ras homolog gene family, member J
mm9_v1_chr7_+_128195668_128195858	0.0647221	CDX1,2,4.p2	AK188768|Mettl9|59052|methyltransferase like 9	AK202674|Mettl9|59052|methyltransferase like 9	AK208061|Mettl9|59052|methyltransferase like 9	AK209406|Mettl9|59052|methyltransferase like 9	AK210173|Mettl9|59052|methyltransferase like 9	AK217664|Mettl9|59052|methyltransferase like 9	AK219043|Mettl9|59052|methyltransferase like 9	AK206681|Mettl9|59052|methyltransferase like 9	AK216652|Mettl9|59052|methyltransferase like 9
mm9_v1_chr18_-_9995729_9995838	0.0645803	CDX1,2,4.p2	AK206781|Usp14|59025|ubiquitin specific peptidase 14	AK209109|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr2_-_51790406_51790534	0.0642209	CDX1,2,4.p2	BC003333|Rbm43|71684|RNA binding motif protein 43	NM_001141981|Rbm43|71684|RNA binding motif protein 43	NM_030243|Rbm43|71684|RNA binding motif protein 43
mm9_v1_chr1_-_34490108_34490136	0.0641325	CDX1,2,4.p2	
mm9_v1_chr13_-_101603253_101603421	0.0641004	CDX1,2,4.p2	AF461761|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	BC033452|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK090176|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK088004|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK051183|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	NM_022885|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5
mm9_v1_chr14_-_21365595_21365800	0.0640031	CDX1,2,4.p2	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr4_-_150421459_150421590	0.0638137	CDX1,2,4.p2	
mm9_v1_chr3_+_95392919_95392945	0.0637751	CDX1,2,4.p2	BC027194|Golph3l|229593|golgi phosphoprotein 3-like
mm9_v1_chr2_-_163450863_163450871	0.0637468	CDX1,2,4.p2	AK003471|Serinc3|26943|serine incorporator 3
mm9_v1_chr2_-_93689902_93690028	0.063613	CDX1,2,4.p2	BC039569|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	NM_183220|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	AK011867|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)	AK040509|Accs|329470|1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
mm9_v1_chr3_-_103546233_103546253	0.0635756	CDX1,2,4.p2	AK031871|Hipk1|15257|homeodomain interacting protein kinase 1
mm9_v1_chr6_+_66485368_66485514	0.0635153	CDX1,2,4.p2	AK166065|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK012590|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK010401|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK082934|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	NM_019499|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	AK160286|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	U83902|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)	BC089012|Mad2l1|56150|MAD2 mitotic arrest deficient-like 1 (yeast)
mm9_v1_chr1_+_34062720_34062743	0.0634796	CDX1,2,4.p2	AK039885|Dst|13518|dystonin
mm9_v1_chr5_-_101001209_101001243	0.0631129	CDX1,2,4.p2	AF263458|Plac8|231507|placenta-specific 8	AK007369|Plac8|231507|placenta-specific 8	NM_139198|Plac8|231507|placenta-specific 8	AJ422151|Plac8|231507|placenta-specific 8
mm9_v1_chr6_+_47827535_47827591	0.0630327	CDX1,2,4.p2	NM_146175|Zfp282|101095|zinc finger protein 282	AK088531|Zfp282|101095|zinc finger protein 282	AK148038|Zfp282|101095|zinc finger protein 282
mm9_v1_chr11_-_69648350_69648356	0.0629331	CDX1,2,4.p2	AK173159|Nlgn2|216856|neuroligin 2	NM_198862|Nlgn2|216856|neuroligin 2
mm9_v1_chr4_-_149072755_149072816	0.0628525	CDX1,2,4.p2	BC035203|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164049|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_001164050|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide	NM_008840|Pik3cd|18707|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm9_v1_chr7_+_130267398_130267398	0.0628181	CDX1,2,4.p2	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr12_+_101122706_101122828	0.0627115	CDX1,2,4.p2	NM_028354|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK033868|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK014855|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK088990|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK137004|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1	AK079006|Tdp1|104884|tyrosyl-DNA phosphodiesterase 1
mm9_v1_chr10_+_80730916_80731009	0.0625073	CDX1,2,4.p2	AK045965|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3	NM_018758|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3	AK169462|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3	AK170182|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3	BC009666|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3	AF070975|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3	BC005423|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3	AK082046|Apba3|57267|amyloid beta (A4) precursor protein-binding, family A, member 3
mm9_v1_chr7_+_148091870_148091986	0.0624337	CDX1,2,4.p2	BC024386|BC024386|212965|cDNA sequence BC023486	BC014806|BC024386|212965|cDNA sequence BC023486	BC039766|BC024386|212965|cDNA sequence BC023486	BC087948|BC024386|212965|cDNA sequence BC023486	BC061156|BC024386|212965|cDNA sequence BC023486
mm9_v1_chr5_+_104868321_104868417	0.0624043	CDX1,2,4.p2	BC014284|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr14_+_60244117_60244148	0.0623569	CDX1,2,4.p2	NM_145463|Shisa2|219134|shisa homolog 2 (Xenopus laevis)	AK034905|Shisa2|219134|shisa homolog 2 (Xenopus laevis)	AK087512|Shisa2|219134|shisa homolog 2 (Xenopus laevis)
mm9_v1_chr10_-_60610238_60610394	0.0623469	CDX1,2,4.p2	AK036747|Sgpl1|20397|sphingosine phosphate lyase 1	AK150053|Sgpl1|20397|sphingosine phosphate lyase 1	AK173137|Sgpl1|20397|sphingosine phosphate lyase 1	AF036894|Sgpl1|20397|sphingosine phosphate lyase 1	BC026135|Sgpl1|20397|sphingosine phosphate lyase 1	AK037789|Sgpl1|20397|sphingosine phosphate lyase 1	AK043024|Sgpl1|20397|sphingosine phosphate lyase 1	AK049342|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr9_+_65283563_65283648	0.0622074	CDX1,2,4.p2	AK009430|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	NM_027134|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	AK133492|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase	BC019509|Mtfmt|69606|mitochondrial methionyl-tRNA formyltransferase
mm9_v1_chr11_+_3863948_3864033	0.0621996	CDX1,2,4.p2	AK029075|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	NM_022889|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC004844|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	BC011142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK088831|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AF289539|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)	AK220142|Pes1|64934|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm9_v1_chr10_+_82323313_82323353	0.0621288	CDX1,2,4.p2	BC020274|Txnrd1|50493|thioredoxin reductase 1	AK177272|Txnrd1|50493|thioredoxin reductase 1	AK180432|Txnrd1|50493|thioredoxin reductase 1	AK184063|Txnrd1|50493|thioredoxin reductase 1	AK185936|Txnrd1|50493|thioredoxin reductase 1
mm9_v1_chr7_-_134519509_134519563	0.0620858	CDX1,2,4.p2	BC058799|Zfp747|269997|zinc finger protein 747	AK032584|Zfp747|269997|zinc finger protein 747	AK042972|Zfp747|269997|zinc finger protein 747	NM_175560|Zfp747|269997|zinc finger protein 747
mm9_v1_chr11_+_80196766_80196898	0.061779	CDX1,2,4.p2	AK087885|Zfp207|22680|zinc finger protein 207	NM_001130169|Zfp207|22680|zinc finger protein 207	NM_001130170|Zfp207|22680|zinc finger protein 207	NM_001130171|Zfp207|22680|zinc finger protein 207	NM_011751|Zfp207|22680|zinc finger protein 207	AK140139|Zfp207|22680|zinc finger protein 207	AK146787|Zfp207|22680|zinc finger protein 207	AK159683|Zfp207|22680|zinc finger protein 207	AK033497|Zfp207|22680|zinc finger protein 207	BC003715|Zfp207|22680|zinc finger protein 207	AB013357|Zfp207|22680|zinc finger protein 207	AB032196|Zfp207|22680|zinc finger protein 207
mm9_v1_chr9_+_50425425_50425450	0.0617679	CDX1,2,4.p2	NM_028300|Pih1d2|72614|PIH1 domain containing 2	AK080744|Pih1d2|72614|PIH1 domain containing 2	BC039645|Pih1d2|72614|PIH1 domain containing 2	AK012458|Pih1d2|72614|PIH1 domain containing 2
mm9_v1_chr5_-_125914417_125914513	0.0617463	CDX1,2,4.p2	BC066077|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	NM_203319|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	BC080298|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	AK148257|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37
mm9_v1_chr17_-_31266539_31266557	0.0615252	CDX1,2,4.p2	BC011042|Tff3|21786|trefoil factor 3, intestinal	AK008538|Tff3|21786|trefoil factor 3, intestinal	D38410|Tff3|21786|trefoil factor 3, intestinal	NM_011575|Tff3|21786|trefoil factor 3, intestinal
mm9_v1_chr11_-_119948078_119948092	0.0612151	CDX1,2,4.p2	BC141108|Azi1|12009|5-azacytidine induced gene 1
mm9_v1_chr8_-_4779533_4779566	0.0611801	CDX1,2,4.p2	AF017152|Shcbp1|20419|Shc SH2-domain binding protein 1	NM_011369|Shcbp1|20419|Shc SH2-domain binding protein 1	AK162943|Shcbp1|20419|Shc SH2-domain binding protein 1	AK149580|Shcbp1|20419|Shc SH2-domain binding protein 1	AK137496|Shcbp1|20419|Shc SH2-domain binding protein 1	BC070455|Shcbp1|20419|Shc SH2-domain binding protein 1	AK144966|Shcbp1|20419|Shc SH2-domain binding protein 1	AK052944|Shcbp1|20419|Shc SH2-domain binding protein 1	AK051205|Shcbp1|20419|Shc SH2-domain binding protein 1
mm9_v1_chrX_-_53851046_53851096	0.0610846	CDX1,2,4.p2	EU069461|Mmgt1|236792|membrane magnesium transporter 1	AK049689|Mmgt1|236792|membrane magnesium transporter 1	AK036253|Mmgt1|236792|membrane magnesium transporter 1	NM_146234|Mmgt1|236792|membrane magnesium transporter 1
mm9_v1_chr5_+_150076605_150076688	0.0607782	CDX1,2,4.p2	AK004002|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	BC026209|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	NM_009663|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	AK075967|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	M96554|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein
mm9_v1_chr16_+_16870904_16870931	0.0605888	CDX1,2,4.p2	AB045324|Top3b|21976|topoisomerase (DNA) III beta
mm9_v1_chr8_+_107572489_107572523	0.0603309	CDX1,2,4.p2	NM_001164681|Ces3a|382053|carboxylesterase 3A	NM_198672|Ces3a|382053|carboxylesterase 3A	AK138932|Ces3a|382053|carboxylesterase 3A	BC061004|Ces3a|382053|carboxylesterase 3A	BC035526|Ces3a|382053|carboxylesterase 3A	BC057187|Ces3a|382053|carboxylesterase 3A	BC057188|Ces3a|382053|carboxylesterase 3A	BC048380|Ces3a|382053|carboxylesterase 3A	L11333|Ces3a|382053|carboxylesterase 3A	S64130|Ces3a|382053|carboxylesterase 3A
mm9_v1_chr9_-_7835107_7835268	0.0600885	CDX1,2,4.p2	BC145985|Birc2|11797|baculoviral IAP repeat-containing 2	NM_007465|Birc2|11797|baculoviral IAP repeat-containing 2	U88909|Birc2|11797|baculoviral IAP repeat-containing 2	BC033480|Birc2|11797|baculoviral IAP repeat-containing 2
mm9_v1_chr7_+_13563196_13563254	0.0600712	CDX1,2,4.p2	AK041761|Zfp446|269870|zinc finger protein 446	BC117850|Zfp446|269870|zinc finger protein 446	BC117851|Zfp446|269870|zinc finger protein 446	NM_001168561|Zfp446|269870|zinc finger protein 446	NM_001168562|Zfp446|269870|zinc finger protein 446	NM_175558|Zfp446|269870|zinc finger protein 446	AK044666|Zfp446|269870|zinc finger protein 446	BC048909|Zfp446|269870|zinc finger protein 446
mm9_v1_chr8_+_74763920_74764019	0.0599123	CDX1,2,4.p2	AK148173|Ap1m1|11767|adaptor-related protein complex AP-1, mu subunit 1
mm9_v1_chr15_+_6395311_6395349	0.0597923	CDX1,2,4.p2	BC011137|C9|12279|complement component 9	NM_013485|C9|12279|complement component 9
mm9_v1_chr11_-_50641191_50641232	0.0597883	CDX1,2,4.p2	AK086760|Zfp354c|30944|zinc finger protein 354C	AK220194|Zfp354c|30944|zinc finger protein 354C	AK145882|Zfp354c|30944|zinc finger protein 354C	BC079908|Zfp354c|30944|zinc finger protein 354C	NM_013922|Zfp354c|30944|zinc finger protein 354C
mm9_v1_chr19_-_7473566_7473625	0.0597533	CDX1,2,4.p2	
mm9_v1_chr9_-_66883879_66883923	0.0596996	CDX1,2,4.p2	AK215633|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr17_-_13133166_13133267	0.0593957	CDX1,2,4.p2	BC049873|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	AK143884|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	AK149441|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	NM_153151|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3	AF356876|Acat3|224530|acetyl-Coenzyme A acetyltransferase 3
mm9_v1_chr1_-_20793592_20793721	0.0593418	CDX1,2,4.p2	AK219838|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)
mm9_v1_chr5_-_87569342_87569376	0.0592323	CDX1,2,4.p2	X06358|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	BC028262|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	AK136480|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5	NM_009467|Ugt2b5|22238|UDP glucuronosyltransferase 2 family, polypeptide B5
mm9_v1_chr9_-_57287763_57287952	0.0592241	CDX1,2,4.p2	AK031599|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK038628|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK036042|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK078825|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	AK007887|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	BC004779|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase	NM_176831|Ppcdc|66812|phosphopantothenoylcysteine decarboxylase
mm9_v1_chr1_-_13579802_13579867	0.0591123	CDX1,2,4.p2	CT010238|Tram1|72265|translocating chain-associating membrane protein 1	AY029764|Tram1|72265|translocating chain-associating membrane protein 1	AK164347|Tram1|72265|translocating chain-associating membrane protein 1
mm9_v1_chr13_-_98976043_98976393	0.0587095	CDX1,2,4.p2	BC138030|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC075734|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC098331|Rgnef|110596|Rho-guanine nucleotide exchange factor	NM_012026|Rgnef|110596|Rho-guanine nucleotide exchange factor	U73199|Rgnef|110596|Rho-guanine nucleotide exchange factor	BC022978|Rgnef|110596|Rho-guanine nucleotide exchange factor	AK173325|Rgnef|110596|Rho-guanine nucleotide exchange factor
mm9_v1_chr10_-_116652417_116652563	0.0582322	CDX1,2,4.p2	AK188062|Yeats4|64050|YEATS domain containing 4
mm9_v1_chr3_+_69525922_69526018	0.058197	CDX1,2,4.p2	AK145248|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK088667|Nmd3|97112|NMD3 homolog (S. cerevisiae)	BC003842|Nmd3|97112|NMD3 homolog (S. cerevisiae)	NM_133787|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK198106|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK166283|Nmd3|97112|NMD3 homolog (S. cerevisiae)	AK143289|Nmd3|97112|NMD3 homolog (S. cerevisiae)
mm9_v1_chrX_+_20271802_20271845	0.0580381	CDX1,2,4.p2	AK214881|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chrX_+_102318792_102318798	0.0580219	CDX1,2,4.p2	AK209904|Magee1|107528|melanoma antigen, family E, 1
mm9_v1_chr15_-_8395352_8395358	0.0579314	CDX1,2,4.p2	
mm9_v1_chr10_+_34018323_34018472	0.0579217	CDX1,2,4.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chr2_-_73749317_73749415	0.0577609	CDX1,2,4.p2	AK077930|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	NM_175015|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	AK087955|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
mm9_v1_chr10_+_127759512_127759609	0.0575343	CDX1,2,4.p2	AF186115|Cnpy2|56530|canopy 2 homolog (zebrafish)	NM_019953|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK150953|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr9_-_54582260_54582334	0.057143	CDX1,2,4.p2	AK012342|Wdr61|66317|WD repeat domain 61	AK167706|Wdr61|66317|WD repeat domain 61	AK153862|Wdr61|66317|WD repeat domain 61	AK077037|Wdr61|66317|WD repeat domain 61	EF011623|Wdr61|66317|WD repeat domain 61	BC023026|Wdr61|66317|WD repeat domain 61	NM_001025375|Wdr61|66317|WD repeat domain 61	AK010283|Wdr61|66317|WD repeat domain 61	AF309554|Wdr61|66317|WD repeat domain 61	AK142498|Wdr61|66317|WD repeat domain 61	NM_001025376|Wdr61|66317|WD repeat domain 61	AK013114|Wdr61|66317|WD repeat domain 61	AK049527|Wdr61|66317|WD repeat domain 61	NM_023191|Wdr61|66317|WD repeat domain 61
mm9_v1_chr4_+_45310018_45310039	0.0564423	CDX1,2,4.p2	AK011746|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	AK030465|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3	NM_027266|Rg9mtd3|69934|RNA (guanine-9-) methyltransferase domain containing 3
mm9_v1_chr19_+_22767272_22767282	0.056399	CDX1,2,4.p2	AK053673|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK046908|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK077331|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK082141|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK142504|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK161909|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AK163890|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr18_-_64648683_64648745	0.0562758	CDX1,2,4.p2	AK083560|Fech|14151|ferrochelatase	BC094548|Fech|14151|ferrochelatase	M61215|Fech|14151|ferrochelatase	AK004718|Fech|14151|ferrochelatase	NM_007998|Fech|14151|ferrochelatase	AK018738|Fech|14151|ferrochelatase	AK150685|Fech|14151|ferrochelatase
mm9_v1_chr5_-_115569276_115569358	0.0561183	CDX1,2,4.p2	L11163|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	AK169428|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	BC055063|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	BC016259|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	NM_007383|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	AK155361|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain
mm9_v1_chr3_-_146432922_146432972	0.0556873	CDX1,2,4.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr5_-_36873134_36873271	0.0556608	CDX1,2,4.p2	AB064521|Tbc1d14|100855|TBC1 domain family, member 14	BC011420|Tbc1d14|100855|TBC1 domain family, member 14	AK013092|Tbc1d14|100855|TBC1 domain family, member 14	NM_001113364|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr5_-_87355527_87355556	0.0555597	CDX1,2,4.p2	BC027200|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	NM_152811|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK004971|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK050435|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1
mm9_v1_chr1_-_170362298_170362315	0.0554908	CDX1,2,4.p2	AK045252|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144346|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144446|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr2_-_28438708_28438725	0.055349	CDX1,2,4.p2	BC027247|Gtf3c5|70239|general transcription factor IIIC, polypeptide 5	BC039171|Gtf3c5|70239|general transcription factor IIIC, polypeptide 5
mm9_v1_chr19_+_10525829_10525836	0.0552767	CDX1,2,4.p2	
mm9_v1_chr6_+_108733041_108733073	0.0551151	CDX1,2,4.p2	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr2_+_113167862_113167938	0.0546936	CDX1,2,4.p2	NM_001043322|Fmn1|14260|formin 1	NM_010230|Fmn1|14260|formin 1	AK135758|Fmn1|14260|formin 1	X53599|Fmn1|14260|formin 1
mm9_v1_chr2_-_173411352_173411489	0.0545552	CDX1,2,4.p2	AK080176|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK046376|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene
mm9_v1_chr5_+_31754808_31754902	0.0543917	CDX1,2,4.p2	NM_172993|Zfp512|269639|zinc finger protein 512	AK173267|Zfp512|269639|zinc finger protein 512	AK146353|Zfp512|269639|zinc finger protein 512	AK084205|Zfp512|269639|zinc finger protein 512	AK149921|Zfp512|269639|zinc finger protein 512	AK154918|Zfp512|269639|zinc finger protein 512	BC089160|Zfp512|269639|zinc finger protein 512	BC066136|Zfp512|269639|zinc finger protein 512
mm9_v1_chr11_+_102294276_102294332	0.0543276	CDX1,2,4.p2	BC037047|Grn|14824|granulin	X62321|Grn|14824|granulin	AK196399|Grn|14824|granulin	AK205747|Grn|14824|granulin
mm9_v1_chr18_+_69843730_69844096	0.0542629	CDX1,2,4.p2	AK021032|Tcf4|21413|transcription factor 4	AK047926|Tcf4|21413|transcription factor 4	AK045400|Tcf4|21413|transcription factor 4	AK083152|Tcf4|21413|transcription factor 4	AK039181|Tcf4|21413|transcription factor 4	AK040346|Tcf4|21413|transcription factor 4	AK032345|Tcf4|21413|transcription factor 4
mm9_v1_chr14_-_67422871_67422921	0.0542368	CDX1,2,4.p2	AK084113|Dpysl2|12934|dihydropyrimidinase-like 2
mm9_v1_chr1_+_82721562_82721635	0.0542134	CDX1,2,4.p2	AK217444|Mff|75734|mitochondrial fission factor	AK218934|Mff|75734|mitochondrial fission factor
mm9_v1_chr14_+_35148567_35148593	0.0541783	CDX1,2,4.p2	AK213533|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr3_+_87885892_87885972	0.0541747	CDX1,2,4.p2	BC151102|Iqgap3|404710|IQ motif containing GTPase activating protein 3	AK050913|Iqgap3|404710|IQ motif containing GTPase activating protein 3	AK162700|Iqgap3|404710|IQ motif containing GTPase activating protein 3	BC068159|Iqgap3|404710|IQ motif containing GTPase activating protein 3	NM_001033484|Iqgap3|404710|IQ motif containing GTPase activating protein 3
mm9_v1_chr2_-_34956162_34956206	0.0540571	CDX1,2,4.p2	BC019541|AI182371|98870|expressed sequence AI182371	BC037995|AI182371|98870|expressed sequence AI182371	AK050413|AI182371|98870|expressed sequence AI182371	BC115979|AI182371|98870|expressed sequence AI182371	BC115986|AI182371|98870|expressed sequence AI182371	NM_178885|AI182371|98870|expressed sequence AI182371	BC094504|AI182371|98870|expressed sequence AI182371	AK050126|AI182371|98870|expressed sequence AI182371
mm9_v1_chr19_-_36811137_36811158	0.0539011	CDX1,2,4.p2	AK078735|Ppp1r3c|53412|protein phosphatase 1, regulatory (inhibitor) subunit 3C	BC052769|Ppp1r3c|53412|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm9_v1_chr19_-_56622502_56622559	0.0538248	CDX1,2,4.p2	NM_018831|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr10_-_80499974_80500080	0.053753	CDX1,2,4.p2	BC085175|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3	AK087519|Slc39a3|106947|solute carrier family 39 (zinc transporter), member 3
mm9_v1_chr10_-_61441817_61441832	0.0537399	CDX1,2,4.p2	BC034164|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr17_-_45722206_45722315	0.0536843	CDX1,2,4.p2	AK214128|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK215659|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK216350|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK220067|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr18_-_6241487_6241496	0.0536556	CDX1,2,4.p2	BC013817|Kif5b|16573|kinesin family member 5B	BC025864|Kif5b|16573|kinesin family member 5B
mm9_v1_chr11_-_80191456_80191500	0.0535359	CDX1,2,4.p2	AK135352|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK017667|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	BC055024|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr11_-_42134509_42134538	0.0534772	CDX1,2,4.p2	X51986|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr5_+_136470670_136470775	0.0530936	CDX1,2,4.p2	AK012137|Dtx2|74198|deltex 2 homolog (Drosophila)	AK054443|Dtx2|74198|deltex 2 homolog (Drosophila)	AK044105|Dtx2|74198|deltex 2 homolog (Drosophila)	BC024925|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015423|Dtx2|74198|deltex 2 homolog (Drosophila)	AB015424|Dtx2|74198|deltex 2 homolog (Drosophila)	NM_023742|Dtx2|74198|deltex 2 homolog (Drosophila)
mm9_v1_chr14_+_55506625_55506792	0.0528617	CDX1,2,4.p2	AK020321|Bcl2l2|12050|BCL2-like 2	AK020923|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr3_+_51297898_51297938	0.0527038	CDX1,2,4.p2	
mm9_v1_chr12_+_86337250_86337338	0.0523032	CDX1,2,4.p2	AK044440|Ylpm1|56531|YLP motif containing 1	NM_178363|Ylpm1|56531|YLP motif containing 1	BC031541|Ylpm1|56531|YLP motif containing 1	AK087500|Ylpm1|56531|YLP motif containing 1	AB033168|Ylpm1|56531|YLP motif containing 1
mm9_v1_chr3_+_51299153_51299205	0.0521254	CDX1,2,4.p2	
mm9_v1_chr9_+_123429291_123429490	0.0518873	CDX1,2,4.p2	AK180316|Limd1|29806|LIM domains containing 1	AK212225|Limd1|29806|LIM domains containing 1	AK215267|Limd1|29806|LIM domains containing 1	AK215631|Limd1|29806|LIM domains containing 1	AK216846|Limd1|29806|LIM domains containing 1	AK220081|Limd1|29806|LIM domains containing 1	AK210611|Limd1|29806|LIM domains containing 1
mm9_v1_chr8_-_48374715_48374736	0.0517347	CDX1,2,4.p2	AK129346|Stox2|71069|storkhead box 2
mm9_v1_chr7_-_59261060_59261387	0.051662	CDX1,2,4.p2	AK005663|Svip|75744|small VCP/p97-interacting protein	AK029831|Svip|75744|small VCP/p97-interacting protein	BC100498|Svip|75744|small VCP/p97-interacting protein	BC049720|Svip|75744|small VCP/p97-interacting protein	AK133737|Svip|75744|small VCP/p97-interacting protein	AK018351|Svip|75744|small VCP/p97-interacting protein	AK158571|Svip|75744|small VCP/p97-interacting protein	NM_001160345|Svip|75744|small VCP/p97-interacting protein
mm9_v1_chr5_-_37187799_37187854	0.0516361	CDX1,2,4.p2	BC085488|Mrfap1|67568|Morf4 family associated protein 1
mm9_v1_chr10_-_31165613_31165628	0.0516319	CDX1,2,4.p2	BC141068|Tpd52l1|21987|tumor protein D52-like 1	BC145321|Tpd52l1|21987|tumor protein D52-like 1	BC145322|Tpd52l1|21987|tumor protein D52-like 1	BC171924|Tpd52l1|21987|tumor protein D52-like 1	AK131855|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chrX_-_35988279_35988319	0.0515916	CDX1,2,4.p2	BC029909|C1galt1c1|59048|C1GALT1-specific chaperone 1	NM_021550|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr15_-_35085306_35085560	0.0514328	CDX1,2,4.p2	AF271361|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	BC049123|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	U28726|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	AY058922|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	BC037440|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)	NM_019635|Stk3|56274|serine/threonine kinase 3 (Ste20, yeast homolog)
mm9_v1_chr2_+_162843196_162843279	0.0513832	CDX1,2,4.p2	AK160745|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK088467|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	NM_172150|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK144188|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	BC037708|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)
mm9_v1_chr10_-_117261663_117261731	0.0512267	CDX1,2,4.p2	M79314|Rap1b|215449|RAS related protein 1b	BC147700|Rap1b|215449|RAS related protein 1b	BC147713|Rap1b|215449|RAS related protein 1b
mm9_v1_chr6_+_54251485_54251608	0.0509866	CDX1,2,4.p2	
mm9_v1_chr10_-_7500674_7500717	0.0508968	CDX1,2,4.p2	AK144481|BC013529|215751|cDNA sequence BC013529	BC013529|BC013529|215751|cDNA sequence BC013529	NM_145418|BC013529|215751|cDNA sequence BC013529
mm9_v1_chr16_+_4886183_4886360	0.0508627	CDX1,2,4.p2	NM_029657|Mgrn1|17237|mahogunin, ring finger 1	BC046830|Mgrn1|17237|mahogunin, ring finger 1	AK150176|Mgrn1|17237|mahogunin, ring finger 1	AK153407|Mgrn1|17237|mahogunin, ring finger 1	AK011747|Mgrn1|17237|mahogunin, ring finger 1	AK088533|Mgrn1|17237|mahogunin, ring finger 1	AK182412|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr19_-_58529766_58529841	0.0507541	CDX1,2,4.p2	BC044783|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AK076171|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr11_+_102110161_102110288	0.0506714	CDX1,2,4.p2	NM_153544|BC030867|217216|cDNA sequence BC030867	AK029811|BC030867|217216|cDNA sequence BC030867	BC030867|BC030867|217216|cDNA sequence BC030867	BC108338|BC030867|217216|cDNA sequence BC030867	BC085317|BC030867|217216|cDNA sequence BC030867
mm9_v1_chr4_-_34634507_34634712	0.0503929	CDX1,2,4.p2	Z71268|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1	BC012252|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1	AK144170|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1	NM_011895|Slc35a1|24060|solute carrier family 35 (CMP-sialic acid transporter), member 1
mm9_v1_chr7_+_135047661_135047661	0.0503222	CDX1,2,4.p2	AK075602|Bckdk|12041|branched chain ketoacid dehydrogenase kinase
mm9_v1_chr11_-_6100164_6100207	0.0502557	CDX1,2,4.p2	AK049739|Nudcd3|209586|NudC domain containing 3	AK171224|Nudcd3|209586|NudC domain containing 3	BC024322|Nudcd3|209586|NudC domain containing 3	AK046219|Nudcd3|209586|NudC domain containing 3	AK030050|Nudcd3|209586|NudC domain containing 3	AK159391|Nudcd3|209586|NudC domain containing 3	AK159458|Nudcd3|209586|NudC domain containing 3	AK170329|Nudcd3|209586|NudC domain containing 3	AK169797|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr1_-_183111470_183111575	0.050154	CDX1,2,4.p2	AK211036|Wdr26|226757|WD repeat domain 26
mm9_v1_chrX_+_135744582_135744582	0.0501363	CDX1,2,4.p2	NM_001164630|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_175541|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr1_+_137732961_137733002	0.050068	CDX1,2,4.p2	NM_001130174|Tnnt2|21956|troponin T2, cardiac	NM_001130175|Tnnt2|21956|troponin T2, cardiac	NM_001130177|Tnnt2|21956|troponin T2, cardiac	NM_001130178|Tnnt2|21956|troponin T2, cardiac	NM_001130179|Tnnt2|21956|troponin T2, cardiac	NM_001130180|Tnnt2|21956|troponin T2, cardiac	NM_001130181|Tnnt2|21956|troponin T2, cardiac	NM_011619|Tnnt2|21956|troponin T2, cardiac	AK086260|Tnnt2|21956|troponin T2, cardiac	AK146945|Tnnt2|21956|troponin T2, cardiac	AK163786|Tnnt2|21956|troponin T2, cardiac	AK164592|Tnnt2|21956|troponin T2, cardiac	AK168393|Tnnt2|21956|troponin T2, cardiac	AK169061|Tnnt2|21956|troponin T2, cardiac	L47600|Tnnt2|21956|troponin T2, cardiac	L47599|Tnnt2|21956|troponin T2, cardiac	L47552|Tnnt2|21956|troponin T2, cardiac	L47551|Tnnt2|21956|troponin T2, cardiac	L47549|Tnnt2|21956|troponin T2, cardiac	NM_001136083|Tnnt2|21956|troponin T2, cardiac	L47550|Tnnt2|21956|troponin T2, cardiac
mm9_v1_chr4_-_117564594_117564651	0.0499744	CDX1,2,4.p2	BC031124|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK018638|Dph2|67728|DPH2 homolog (S. cerevisiae)	NM_026344|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK011199|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK051026|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK080747|Dph2|67728|DPH2 homolog (S. cerevisiae)	BC014746|Dph2|67728|DPH2 homolog (S. cerevisiae)
mm9_v1_chr10_+_79174594_79174653	0.0499649	CDX1,2,4.p2	AK185787|Bsg|12215|basigin
mm9_v1_chr7_-_52973262_52973371	0.0499411	CDX1,2,4.p2	AK146414|Sphk2|56632|sphingosine kinase 2	AK151990|Sphk2|56632|sphingosine kinase 2	BC053737|Sphk2|56632|sphingosine kinase 2	AF245448|Sphk2|56632|sphingosine kinase 2	NM_001172561|Sphk2|56632|sphingosine kinase 2	NM_203280|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr15_+_101974616_101974616	0.0495941	CDX1,2,4.p2	NM_008344|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr1_-_39608846_39608882	0.0493405	CDX1,2,4.p2	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr4_+_48292705_48292756	0.0492659	CDX1,2,4.p2	BC126929|Invs|16348|inversin
mm9_v1_chr8_+_119983664_119983684	0.0490243	CDX1,2,4.p2	
mm9_v1_chr5_-_109027924_109027935	0.0488497	CDX1,2,4.p2	AK034637|Gak|231580|cyclin G associated kinase
mm9_v1_chr5_-_136384495_136384514	0.048769	CDX1,2,4.p2	
mm9_v1_chr11_+_46254601_46254700	0.0486987	CDX1,2,4.p2	AK210054|Med7|66213|mediator complex subunit 7
mm9_v1_chr4_+_115457560_115457648	0.0485408	CDX1,2,4.p2	BC044874|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1	NM_181040|Atpaf1|230649|ATP synthase mitochondrial F1 complex assembly factor 1
mm9_v1_chr6_+_87040212_87040221	0.0484709	CDX1,2,4.p2	AK013141|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr17_+_35404109_35404141	0.0482512	CDX1,2,4.p2	
mm9_v1_chr10_-_18506598_18506598	0.048157	CDX1,2,4.p2	AK030207|Gm4922|237300|predicted gene 4922	NM_177706|Gm4922|237300|predicted gene 4922
mm9_v1_chr11_+_81859212_81859265	0.0481449	CDX1,2,4.p2	NM_013654|Ccl7|20306|chemokine (C-C motif) ligand 7	AK078827|Ccl7|20306|chemokine (C-C motif) ligand 7	BC061126|Ccl7|20306|chemokine (C-C motif) ligand 7	S71251|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128193|Ccl7|20306|chemokine (C-C motif) ligand 7	AF128194|Ccl7|20306|chemokine (C-C motif) ligand 7	L04694|Ccl7|20306|chemokine (C-C motif) ligand 7	S50588|Ccl7|20306|chemokine (C-C motif) ligand 7	Z12297|Ccl7|20306|chemokine (C-C motif) ligand 7
mm9_v1_chr1_-_181682859_181682906	0.04813	CDX1,2,4.p2	AK016646|Ahctf1|226747|AT hook containing transcription factor 1
mm9_v1_chr7_-_87516011_87516144	0.0479269	CDX1,2,4.p2	AK044028|Man2a2|140481|mannosidase 2, alpha 2	NM_172903|Man2a2|140481|mannosidase 2, alpha 2	AK029913|Man2a2|140481|mannosidase 2, alpha 2
mm9_v1_chr7_+_53693190_53693196	0.0478108	CDX1,2,4.p2	AK079373|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1
mm9_v1_chr12_+_56181474_56181576	0.0477443	CDX1,2,4.p2	NM_011899|Srp54a|24067|signal recognition particle 54A	X16319|Srp54b|665155|signal recognition particle 54B	AK011928|Srp54a|24067|signal recognition particle 54A	BC019683|Srp54a|24067|signal recognition particle 54A
mm9_v1_chr10_+_42894504_42894509	0.047682	CDX1,2,4.p2	AK018547|9030612E09Rik|74530|RIKEN cDNA 9030612E09 gene	AK029173|9030612E09Rik|74530|RIKEN cDNA 9030612E09 gene	NM_172419|9030612E09Rik|74530|RIKEN cDNA 9030612E09 gene
mm9_v1_chr2_-_130455670_130455749	0.0475857	CDX1,2,4.p2	BC052898|Fastkd5|380601|FAST kinase domains 5	AF360997|Ubox5|140629|U box domain containing 5	AK034114|Ubox5|140629|U box domain containing 5	NM_080562|Ubox5|140629|U box domain containing 5	AK158052|Ubox5|140629|U box domain containing 5	AK171070|Ubox5|140629|U box domain containing 5	AK005195|Ubox5|140629|U box domain containing 5	AK143929|Fastkd5|380601|FAST kinase domains 5	AK170100|Ubox5|140629|U box domain containing 5
mm9_v1_chr7_+_54110679_54110700	0.047555	CDX1,2,4.p2	
mm9_v1_chr9_-_21940154_21940189	0.0475099	CDX1,2,4.p2	AK010865|Acp5|11433|acid phosphatase 5, tartrate resistant	AK011915|Acp5|11433|acid phosphatase 5, tartrate resistant	NM_001102405|Acp5|11433|acid phosphatase 5, tartrate resistant
mm9_v1_chr11_+_79902901_79902965	0.0470066	CDX1,2,4.p2	NM_001029856|Atad5|237877|ATPase family, AAA domain containing 5	BC038279|Atad5|237877|ATPase family, AAA domain containing 5	AK053857|Atad5|237877|ATPase family, AAA domain containing 5	AK085211|Atad5|237877|ATPase family, AAA domain containing 5	AY557610|Atad5|237877|ATPase family, AAA domain containing 5	AK165945|Atad5|237877|ATPase family, AAA domain containing 5	AK048355|Atad5|237877|ATPase family, AAA domain containing 5	AK032814|Atad5|237877|ATPase family, AAA domain containing 5
mm9_v1_chr8_-_23763885_23763908	0.0469427	CDX1,2,4.p2	AF513911|Polb|18970|polymerase (DNA directed), beta	BC060998|Polb|18970|polymerase (DNA directed), beta	AK077127|Polb|18970|polymerase (DNA directed), beta	AK151436|Polb|18970|polymerase (DNA directed), beta	AK146745|Polb|18970|polymerase (DNA directed), beta	BC006681|Polb|18970|polymerase (DNA directed), beta	NM_011130|Polb|18970|polymerase (DNA directed), beta
mm9_v1_chr4_+_116692006_116692070	0.0467777	CDX1,2,4.p2	NM_001111277|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	NM_175135|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK172173|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK145856|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3	AK172302|Eif2b3|108067|eukaryotic translation initiation factor 2B, subunit 3
mm9_v1_chr1_-_65119965_65120107	0.0467251	CDX1,2,4.p2	M64544|Crygc|12966|crystallin, gamma C	NM_007775|Crygc|12966|crystallin, gamma C	BC056454|Crygc|12966|crystallin, gamma C	EF426301|Crygc|12966|crystallin, gamma C	EF426302|Crygc|12966|crystallin, gamma C	NM_001082573|Crygc|12966|crystallin, gamma C
mm9_v1_chr6_+_116288396_116288456	0.0465423	CDX1,2,4.p2	AK005032|March8|71779|membrane-associated ring finger (C3HC4) 8	AK182250|March8|71779|membrane-associated ring finger (C3HC4) 8	AK189694|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr11_-_118025722_118025748	0.046507	CDX1,2,4.p2	AK210975|Cyth1|19157|cytohesin 1
mm9_v1_chr5_+_33760994_33761117	0.0464578	CDX1,2,4.p2	AK084585|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK163728|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr7_+_128219633_128219975	0.0462841	CDX1,2,4.p2	AK003378|Mettl9|59052|methyltransferase like 9	AK194757|Mettl9|59052|methyltransferase like 9	AK206305|Mettl9|59052|methyltransferase like 9	AK208785|Mettl9|59052|methyltransferase like 9	AK209460|Mettl9|59052|methyltransferase like 9	AK211016|Mettl9|59052|methyltransferase like 9	AK212761|Mettl9|59052|methyltransferase like 9	AK216310|Mettl9|59052|methyltransferase like 9	AK218040|Mettl9|59052|methyltransferase like 9	AK196516|Mettl9|59052|methyltransferase like 9	AK199334|Mettl9|59052|methyltransferase like 9	AK212785|Mettl9|59052|methyltransferase like 9
mm9_v1_chr4_+_155186568_155186886	0.0462329	CDX1,2,4.p2	NM_207678|Ccnl2|56036|cyclin L2	AK007552|Ccnl2|56036|cyclin L2	BC132295|Ccnl2|56036|cyclin L2	AK048244|Ccnl2|56036|cyclin L2	AK156037|Ccnl2|56036|cyclin L2	AB041605|Ccnl2|56036|cyclin L2	AY337018|Ccnl2|56036|cyclin L2	AK169857|Ccnl2|56036|cyclin L2	BC023747|Ccnl2|56036|cyclin L2	AF211859|Ccnl2|56036|cyclin L2	AK044204|Ccnl2|56036|cyclin L2	AK008585|Ccnl2|56036|cyclin L2	AK138938|Ccnl2|56036|cyclin L2
mm9_v1_chr7_+_24897332_24897378	0.0461394	CDX1,2,4.p2	AF167319|Zfp112|57745|zinc finger protein 112	NM_021307|Zfp112|57745|zinc finger protein 112	BC120886|Zfp112|57745|zinc finger protein 112
mm9_v1_chr4_+_134066913_134066990	0.0460255	CDX1,2,4.p2	NM_001081099|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene	BC138271|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene	AK011279|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene
mm9_v1_chr1_-_39634096_39634285	0.0458443	CDX1,2,4.p2	BC115968|Rnf149|67702|ring finger protein 149	NM_001033135|Rnf149|67702|ring finger protein 149	AK155360|Rnf149|67702|ring finger protein 149
mm9_v1_chr14_-_70107206_70107408	0.0457806	CDX1,2,4.p2	BC052536|R3hcc1|71843|R3H domain and coiled-coil containing 1	BC059860|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK032854|R3hcc1|71843|R3H domain and coiled-coil containing 1	AK156843|R3hcc1|71843|R3H domain and coiled-coil containing 1	NM_001146012|R3hcc1|71843|R3H domain and coiled-coil containing 1
mm9_v1_chr8_-_3694155_3694179	0.0457263	CDX1,2,4.p2	M99371|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK080159|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	M34163|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	NM_013517|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK156654|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK172591|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide
mm9_v1_chr13_-_34027824_34027832	0.0456132	CDX1,2,4.p2	BC057950|Serpinb6a|20719|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm9_v1_chr11_+_70658271_70658306	0.0455914	CDX1,2,4.p2	BC060166|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC009814|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	BC080274|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK019413|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK151901|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	AK137236|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr16_-_89960987_89961071	0.0455092	CDX1,2,4.p2	AK017465|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	NM_009384|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	U05245|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr1_-_175810248_175810365	0.0454619	CDX1,2,4.p2	AK136391|Mndal|100040462|myeloid nuclear differentiation antigen like	NM_001170853|Mndal|100040462|myeloid nuclear differentiation antigen like
mm9_v1_chrX_+_34335651_34335798	0.0453848	CDX1,2,4.p2	BC004570|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	BC086756|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	U10404|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK188826|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK195999|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr6_-_85894613_85894649	0.0450816	CDX1,2,4.p2	AK089506|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
mm9_v1_chr5_+_107963729_107963775	0.0450772	CDX1,2,4.p2	AK006463|1700028K03Rik|76421|RIKEN cDNA 1700028K03 gene	NM_175241|1700028K03Rik|76421|RIKEN cDNA 1700028K03 gene	NM_182745|1700028K03Rik|76421|RIKEN cDNA 1700028K03 gene	AK032886|1700028K03Rik|76421|RIKEN cDNA 1700028K03 gene	AK029908|1700028K03Rik|76421|RIKEN cDNA 1700028K03 gene
mm9_v1_chrX_-_136533089_136533133	0.04507	CDX1,2,4.p2	BC037024|Rbm41|237073|RNA binding motif protein 41	AK077972|Rbm41|237073|RNA binding motif protein 41	NM_001172147|Rbm41|237073|RNA binding motif protein 41	NM_001172148|Rbm41|237073|RNA binding motif protein 41	NM_153586|Rbm41|237073|RNA binding motif protein 41
mm9_v1_chrX_-_136533042_136533082	0.044957	CDX1,2,4.p2	AK163147|Rbm41|237073|RNA binding motif protein 41	AK084514|Rbm41|237073|RNA binding motif protein 41	AK084629|Rbm41|237073|RNA binding motif protein 41	AK141075|Rbm41|237073|RNA binding motif protein 41	AK166005|Rbm41|237073|RNA binding motif protein 41	AK040213|Rbm41|237073|RNA binding motif protein 41	AK164496|Rbm41|237073|RNA binding motif protein 41	AK166229|Rbm41|237073|RNA binding motif protein 41
mm9_v1_chr13_+_24904944_24904959	0.044825	CDX1,2,4.p2	AK088171|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr5_-_137969610_137969651	0.0447741	CDX1,2,4.p2	
mm9_v1_chr17_+_33980039_33980123	0.044717	CDX1,2,4.p2	AK140204|Cd320|54219|CD320 antigen	AK021187|Cd320|54219|CD320 antigen	BC026888|Cd320|54219|CD320 antigen
mm9_v1_chr4_+_44943967_44944033	0.0446338	CDX1,2,4.p2	AK013088|Zcchc7|319885|zinc finger, CCHC domain containing 7
mm9_v1_chr10_-_70747929_70748034	0.0445923	CDX1,2,4.p2	AK144468|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK043167|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	BC019464|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK148364|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	NM_145420|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)
mm9_v1_chr1_-_121809744_121809749	0.0445658	CDX1,2,4.p2	BC094344|Tmem177|66343|transmembrane protein 177	NM_175106|Tmem177|66343|transmembrane protein 177	AK009043|Tmem177|66343|transmembrane protein 177	AK076108|Tmem177|66343|transmembrane protein 177
mm9_v1_chr7_+_54110791_54110836	0.0445294	CDX1,2,4.p2	
mm9_v1_chr3_-_37024751_37024880	0.0445247	CDX1,2,4.p2	U41504|Il2|16183|interleukin 2	DQ836354|Il2|16183|interleukin 2	U41494|Il2|16183|interleukin 2	U41505|Il2|16183|interleukin 2	U41506|Il2|16183|interleukin 2	AY147902|Il2|16183|interleukin 2	X66058|Il2|16183|interleukin 2	AF065914|Il2|16183|interleukin 2	AF065915|Il2|16183|interleukin 2	AF065916|Il2|16183|interleukin 2	BC116845|Il2|16183|interleukin 2	BC116873|Il2|16183|interleukin 2	X01772|Il2|16183|interleukin 2	X73040|Il2|16183|interleukin 2	K02292|Il2|16183|interleukin 2	NM_008366|Il2|16183|interleukin 2	AF538059|Il2|16183|interleukin 2	AF542383|Il2|16183|interleukin 2	AF542384|Il2|16183|interleukin 2	AF542385|Il2|16183|interleukin 2
mm9_v1_chr16_-_38445988_38446143	0.0442301	CDX1,2,4.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr6_-_48658211_48658242	0.043856	CDX1,2,4.p2	AK030902|Gimap6|231931|GTPase, IMAP family member 6	AK087275|Gimap6|231931|GTPase, IMAP family member 6	AF503921|Gimap6|231931|GTPase, IMAP family member 6	NM_153175|Gimap6|231931|GTPase, IMAP family member 6
mm9_v1_chr9_-_64020685_64020737	0.0437927	CDX1,2,4.p2	BC027435|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK050917|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK009559|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK019825|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	AK012004|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)	NM_026507|Zwilch|68014|Zwilch, kinetochore associated, homolog (Drosophila)
mm9_v1_chr16_-_96413824_96413863	0.0437483	CDX1,2,4.p2	AK031481|Lca5l|385668|Leber congenital amaurosis 5-like	AK029554|Lca5l|385668|Leber congenital amaurosis 5-like	AK133316|Lca5l|385668|Leber congenital amaurosis 5-like	NM_001001492|Lca5l|385668|Leber congenital amaurosis 5-like
mm9_v1_chr8_+_126545374_126545424	0.0435355	CDX1,2,4.p2	AK133906|Urb2|382038|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm9_v1_chr14_+_61928589_61928687	0.0435004	CDX1,2,4.p2	BC064093|Arl11|219144|ADP-ribosylation factor-like 11	NM_177337|Arl11|219144|ADP-ribosylation factor-like 11	AK155765|Arl11|219144|ADP-ribosylation factor-like 11	AK050053|Arl11|219144|ADP-ribosylation factor-like 11	AK008804|Arl11|219144|ADP-ribosylation factor-like 11
mm9_v1_chr10_+_80720062_80720086	0.0434396	CDX1,2,4.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr2_+_28915770_28915796	0.0426882	CDX1,2,4.p2	AK053589|Ttf1|22130|transcription termination factor, RNA polymerase I	AK163606|Ttf1|22130|transcription termination factor, RNA polymerase I	NM_009442|Ttf1|22130|transcription termination factor, RNA polymerase I	AK140081|Ttf1|22130|transcription termination factor, RNA polymerase I	X83974|Ttf1|22130|transcription termination factor, RNA polymerase I
mm9_v1_chr6_-_54922563_54922606	0.0425553	CDX1,2,4.p2	NM_172729|Nod1|107607|nucleotide-binding oligomerization domain containing 1	AK137585|Nod1|107607|nucleotide-binding oligomerization domain containing 1
mm9_v1_chr12_-_86039703_86039802	0.0425025	CDX1,2,4.p2	AY993933|Tmem90a|627191|transmembrane protein 90a	AK140195|Tmem90a|627191|transmembrane protein 90a	NM_001033334|Tmem90a|627191|transmembrane protein 90a	AY993934|Tmem90a|627191|transmembrane protein 90a
mm9_v1_chr3_-_142456600_142456910	0.042033	CDX1,2,4.p2	AK140746|Pkn2|109333|protein kinase N2	AK084887|Pkn2|109333|protein kinase N2	AK082921|Pkn2|109333|protein kinase N2
mm9_v1_chr8_+_87432522_87432575	0.0419936	CDX1,2,4.p2	AK145192|Dnase2a|13423|deoxyribonuclease II alpha	NM_010062|Dnase2a|13423|deoxyribonuclease II alpha	AK167277|Dnase2a|13423|deoxyribonuclease II alpha	BC058609|Dnase2a|13423|deoxyribonuclease II alpha
mm9_v1_chr9_+_120448960_120448967	0.0419726	CDX1,2,4.p2	AK046218|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AK087561|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY714060|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	BC079871|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3	AY376710|Entpd3|215446|ectonucleoside triphosphate diphosphohydrolase 3
mm9_v1_chr9_-_45749384_45749490	0.0418385	CDX1,2,4.p2	AK215815|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr3_+_108162958_108162998	0.0418045	CDX1,2,4.p2	
mm9_v1_chr7_-_50788540_50788580	0.0417955	CDX1,2,4.p2	BC132379|Cd33|12489|CD33 antigen	NM_001111058|Cd33|12489|CD33 antigen	NM_021293|Cd33|12489|CD33 antigen
mm9_v1_chr11_+_119961534_119961626	0.0416411	CDX1,2,4.p2	
mm9_v1_chr10_+_4978128_4978288	0.0415725	CDX1,2,4.p2	AK032502|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr8_-_94879643_94879671	0.0414461	CDX1,2,4.p2	AK181465|4933436C20Rik|71296|RIKEN cDNA 4933436C20 gene
mm9_v1_chr16_-_65105465_65105679	0.0414185	CDX1,2,4.p2	BC120507|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	BC137604|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	NM_008310|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	Z14224|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F	AK045364|Htr1f|15557|5-hydroxytryptamine (serotonin) receptor 1F
mm9_v1_chr2_+_80184132_80184149	0.0413779	CDX1,2,4.p2	
mm9_v1_chr3_-_144372258_144372323	0.0413326	CDX1,2,4.p2	AK178501|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr8_-_109620413_109620444	0.0412144	CDX1,2,4.p2	AK089419|Terf2|21750|telomeric repeat binding factor 2	BC046284|Terf2|21750|telomeric repeat binding factor 2	AK049507|Terf2|21750|telomeric repeat binding factor 2	NM_001083118|Terf2|21750|telomeric repeat binding factor 2	NM_009353|Terf2|21750|telomeric repeat binding factor 2
mm9_v1_chr3_-_51129908_51129958	0.0412136	CDX1,2,4.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr8_-_75005707_75005831	0.0410604	CDX1,2,4.p2	AK090231|Slc35e1|270066|solute carrier family 35, member E1	AK182855|Slc35e1|270066|solute carrier family 35, member E1
mm9_v1_chr8_+_109206967_109207060	0.0410568	CDX1,2,4.p2	AK085030|Tmco7|272538|transmembrane and coiled-coil domains 7	NM_173037|Tmco7|272538|transmembrane and coiled-coil domains 7	AK077757|Tmco7|272538|transmembrane and coiled-coil domains 7	AK054283|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066134|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066869|Tmco7|272538|transmembrane and coiled-coil domains 7	BC069838|Tmco7|272538|transmembrane and coiled-coil domains 7	AK076373|Tmco7|272538|transmembrane and coiled-coil domains 7	AK173250|Tmco7|272538|transmembrane and coiled-coil domains 7
mm9_v1_chr11_-_60013141_60013246	0.0409467	CDX1,2,4.p2	AK040663|Srebf1|20787|sterol regulatory element binding transcription factor 1
mm9_v1_chr11_-_121090513_121090656	0.0408454	CDX1,2,4.p2	BC026616|BC017643|217370|cDNA sequence BC017643	AK158402|BC017643|217370|cDNA sequence BC017643	AK170767|BC017643|217370|cDNA sequence BC017643	BC017643|BC017643|217370|cDNA sequence BC017643	NM_144832|BC017643|217370|cDNA sequence BC017643	AK159453|BC017643|217370|cDNA sequence BC017643	AK168104|BC017643|217370|cDNA sequence BC017643	BC027406|BC017643|217370|cDNA sequence BC017643	AK145884|BC017643|217370|cDNA sequence BC017643
mm9_v1_chr10_-_90612412_90612509	0.0407695	CDX1,2,4.p2	AK208952|Tmpo|21917|thymopoietin
mm9_v1_chr8_-_110112352_110112366	0.0406269	CDX1,2,4.p2	AK158379|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	BC130014|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	BC013513|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
mm9_v1_chr5_+_130231003_130231023	0.0405845	CDX1,2,4.p2	AK170336|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr17_+_56752805_56752873	0.0405448	CDX1,2,4.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chr19_+_23240506_23240595	0.0405443	CDX1,2,4.p2	AK187278|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr14_+_51715674_51715674	0.040493	CDX1,2,4.p2	AK159966|Ang|11727|angiogenin, ribonuclease, RNase A family, 5	NM_007447|Ang|11727|angiogenin, ribonuclease, RNase A family, 5	NM_201239|Rnase4|58809|ribonuclease, RNase A family 4
mm9_v1_chr7_+_90780446_90780552	0.0404742	CDX1,2,4.p2	AK077328|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK142503|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK080060|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK085852|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK009980|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC031733|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AK158178|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	BC058226|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	NM_023377|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AY007808|Stard5|170460|StAR-related lipid transfer (START) domain containing 5	AF480302|Stard5|170460|StAR-related lipid transfer (START) domain containing 5
mm9_v1_chr1_-_184271617_184271724	0.040448	CDX1,2,4.p2	AK162188|Fbxo28|67948|F-box protein 28	AK162091|Fbxo28|67948|F-box protein 28	AK122295|Fbxo28|67948|F-box protein 28
mm9_v1_chr16_-_10313924_10313944	0.0401349	CDX1,2,4.p2	AF083876|Emp2|13731|epithelial membrane protein 2
mm9_v1_chr10_-_87937335_87937390	0.0401249	CDX1,2,4.p2	AK080245|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr18_-_6241497_6241528	0.039904	CDX1,2,4.p2	BC069920|Kif5b|16573|kinesin family member 5B	BC090841|Kif5b|16573|kinesin family member 5B	BC040800|Kif5b|16573|kinesin family member 5B	AK133535|Kif5b|16573|kinesin family member 5B	AK136307|Kif5b|16573|kinesin family member 5B	NM_008448|Kif5b|16573|kinesin family member 5B
mm9_v1_chr11_-_86171026_86171057	0.0398927	CDX1,2,4.p2	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chr13_+_54201964_54202052	0.0396887	CDX1,2,4.p2	AK084725|Sfxn1|14057|sideroflexin 1	AK140048|Sfxn1|14057|sideroflexin 1
mm9_v1_chr3_-_59024076_59024180	0.0395678	CDX1,2,4.p2	AK014807|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12
mm9_v1_chr7_+_128061257_128061281	0.0393288	CDX1,2,4.p2	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr6_-_39675456_39675512	0.039031	CDX1,2,4.p2	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr5_+_116009475_116009502	0.0390257	CDX1,2,4.p2	NM_007475|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr17_-_23330163_23330200	0.038926	CDX1,2,4.p2	BC061205|Zfp40|22700|zinc finger protein 40	AK164585|Zfp40|22700|zinc finger protein 40	BC065097|Zfp40|22700|zinc finger protein 40	NM_009555|Zfp40|22700|zinc finger protein 40	AK049894|Zfp40|22700|zinc finger protein 40
mm9_v1_chr2_+_33097791_33097802	0.0388303	CDX1,2,4.p2	AK187902|Angptl2|26360|angiopoietin-like 2	AK205240|Angptl2|26360|angiopoietin-like 2	AK214337|Angptl2|26360|angiopoietin-like 2
mm9_v1_chr18_+_63158808_63158850	0.038793	CDX1,2,4.p2	AK217399|Napg|108123|N-ethylmaleimide sensitive fusion protein attachment protein gamma
mm9_v1_chr12_+_8214912_8214977	0.0386868	CDX1,2,4.p2	NM_172401|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	AK079099|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	NM_001167768|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	NM_001167767|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	AK076460|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	AK086717|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	AK162914|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	BC057311|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	AK036177|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene	AK162850|1110057K04Rik|68832|RIKEN cDNA 1110057K04 gene
mm9_v1_chr13_-_3610328_3610353	0.0386381	CDX1,2,4.p2	AK171865|BC016423|105203|cDNA sequence BC016423	AK220437|BC016423|105203|cDNA sequence BC016423	AK138119|BC016423|105203|cDNA sequence BC016423	NM_134063|BC016423|105203|cDNA sequence BC016423
mm9_v1_chr9_+_51894422_51894502	0.0385476	CDX1,2,4.p2	
mm9_v1_chr17_+_86577946_86578063	0.0384481	CDX1,2,4.p2	
mm9_v1_chr11_-_94154354_94154488	0.0384233	CDX1,2,4.p2	BC055921|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr5_+_17468366_17468438	0.0384231	CDX1,2,4.p2	BC147449|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	BC147466|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	AK040065|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	NM_001081143|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	BC147839|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3	BC147841|Gnat3|242851|guanine nucleotide binding protein, alpha transducing 3
mm9_v1_chr11_-_70468061_70468117	0.0383547	CDX1,2,4.p2	AK028117|Pfn1|18643|profilin 1	AK150780|Pfn1|18643|profilin 1	BC002080|Pfn1|18643|profilin 1
mm9_v1_chr17_-_38557129_38557129	0.0382169	CDX1,2,4.p2	AB307016|Esp36|100126765|exocrine gland-secreting peptide 36	NM_001177587|Esp36|100126765|exocrine gland-secreting peptide 36
mm9_v1_chr16_+_45158927_45158941	0.0381224	CDX1,2,4.p2	AK005266|Atg3|67841|autophagy-related 3 (yeast)	AK011409|Atg3|67841|autophagy-related 3 (yeast)	AK150914|Atg3|67841|autophagy-related 3 (yeast)	AK159231|Atg3|67841|autophagy-related 3 (yeast)	NM_026402|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr4_-_142718290_142718420	0.0378541	CDX1,2,4.p2	AK136099|Prdm2|110593|PR domain containing 2, with ZNF domain
mm9_v1_chr10_+_41250456_41250646	0.0375317	CDX1,2,4.p2	AK217133|Cd164|53599|CD164 antigen	AK135616|Cd164|53599|CD164 antigen
mm9_v1_chr9_+_69855789_69855998	0.0374997	CDX1,2,4.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr11_-_62190182_62190262	0.0373792	CDX1,2,4.p2	AB093281|Ncor1|20185|nuclear receptor co-repressor 1
mm9_v1_chr1_-_195068455_195068557	0.0372956	CDX1,2,4.p2	DQ089001|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	S75207|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	AK149518|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	AK165212|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	NM_001044751|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1
mm9_v1_chr10_+_40199817_40199881	0.0372122	CDX1,2,4.p2	AK030146|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr13_-_96145297_96145325	0.0370741	CDX1,2,4.p2	AK132575|Aggf1|66549|angiogenic factor with G patch and FHA domains 1
mm9_v1_chr5_+_89012537_89012542	0.0370237	CDX1,2,4.p2	AK013185|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr8_-_27056759_27056953	0.0370152	CDX1,2,4.p2	BC019450|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK189846|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK020410|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase
mm9_v1_chr9_-_20703010_20703071	0.0368894	CDX1,2,4.p2	U70733|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	BC008511|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	NM_016876|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AF108214|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AK168362|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G	AK038249|Eif3g|53356|eukaryotic translation initiation factor 3, subunit G
mm9_v1_chr11_-_17111513_17111579	0.0366996	CDX1,2,4.p2	AK165942|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK007324|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009146|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK009896|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AK017153|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	BC020037|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)	AF349950|Pno1|66249|partner of NOB1 homolog (S. cerevisiae)
mm9_v1_chr3_+_102847115_102847128	0.036667	CDX1,2,4.p2	BC029058|Csde1|229663|cold shock domain containing E1, RNA binding
mm9_v1_chr3_+_19857375_19857397	0.0366368	CDX1,2,4.p2	AK033842|Cp|12870|ceruloplasmin
mm9_v1_chr2_-_132403964_132404008	0.0365984	CDX1,2,4.p2	AK031658|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	NM_001042671|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	NM_001042672|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	NM_028802|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm9_v1_chr10_+_79174315_79174326	0.0365209	CDX1,2,4.p2	AK214017|Bsg|12215|basigin	AK218228|Bsg|12215|basigin	AK219301|Bsg|12215|basigin	AK212432|Bsg|12215|basigin	AK210061|Bsg|12215|basigin
mm9_v1_chr10_-_80380806_80381016	0.0364313	CDX1,2,4.p2	AK180471|Lmnb2|16907|lamin B2	X54098|Lmnb2|16907|lamin B2	BC051985|Lmnb2|16907|lamin B2	BC042430|Lmnb2|16907|lamin B2	NM_010722|Lmnb2|16907|lamin B2
mm9_v1_chr18_+_4375607_4375646	0.0364022	CDX1,2,4.p2	BC057643|Mtpap|67440|mitochondrial poly(A) polymerase	AK135537|Mtpap|67440|mitochondrial poly(A) polymerase
mm9_v1_chr17_-_46804730_46804875	0.0362216	CDX1,2,4.p2	
mm9_v1_chr4_-_133801438_133801522	0.0361917	CDX1,2,4.p2	AK156931|Zfp593|68040|zinc finger protein 593	BC003465|Zfp593|68040|zinc finger protein 593	AK014081|Zfp593|68040|zinc finger protein 593	AK133585|Zfp593|68040|zinc finger protein 593	AK005247|Zfp593|68040|zinc finger protein 593	NM_024215|Zfp593|68040|zinc finger protein 593
mm9_v1_chr11_+_72609717_72609729	0.0359612	CDX1,2,4.p2	AK158924|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1	NM_001045536|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1
mm9_v1_chr19_+_46730385_46730488	0.0359582	CDX1,2,4.p2	
mm9_v1_chr11_+_77908195_77908236	0.0357693	CDX1,2,4.p2	AK141119|BC017647|216971|cDNA sequence BC017647	AK079318|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr6_+_91828040_91828112	0.0356365	CDX1,2,4.p2	NM_172730|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	BC051147|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK170727|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK156259|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK081505|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK039818|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK155581|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK170492|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	BC038871|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene	AK051852|C130022K22Rik|232236|RIKEN cDNA C130022K22 gene
mm9_v1_chr1_-_45559700_45559773	0.0355778	CDX1,2,4.p2	AK139130|Col5a2|12832|collagen, type V, alpha 2	AK160008|Col5a2|12832|collagen, type V, alpha 2	L02918|Col5a2|12832|collagen, type V, alpha 2	AK084803|Col5a2|12832|collagen, type V, alpha 2
mm9_v1_chr11_+_87569075_87569079	0.0355098	CDX1,2,4.p2	AK020764|A430104N18Rik|78591|RIKEN cDNA A430104N18 gene
mm9_v1_chr2_-_110203138_110203154	0.0354845	CDX1,2,4.p2	BC027250|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK003790|Fibin|67606|fin bud initiation factor homolog (zebrafish)	NM_026271|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr18_-_66129715_66129836	0.0351627	CDX1,2,4.p2	AY264291|Cplx4|225644|complexin 4	BC016082|Cplx4|225644|complexin 4	NM_145493|Cplx4|225644|complexin 4	AK044262|Cplx4|225644|complexin 4
mm9_v1_chr5_+_111717505_111717674	0.0350976	CDX1,2,4.p2	AK132014|Ttc28|209683|tetratricopeptide repeat domain 28	AK172165|Ttc28|209683|tetratricopeptide repeat domain 28
mm9_v1_chr3_+_64913564_64913693	0.0350414	CDX1,2,4.p2	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr3_-_100489321_100489392	0.034989	CDX1,2,4.p2	AK013515|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03457|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03458|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr10_-_126648509_126648683	0.03498	CDX1,2,4.p2	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr4_-_140221801_140221819	0.0348087	CDX1,2,4.p2	AK028648|Arhgef10l|72754|Rho guanine nucleotide exchange factor (GEF) 10-like	NM_001112722|Arhgef10l|72754|Rho guanine nucleotide exchange factor (GEF) 10-like
mm9_v1_chr1_-_54495779_54495827	0.0345717	CDX1,2,4.p2	AK160997|Gtf3c3|98488|general transcription factor IIIC, polypeptide 3	BC141157|Gtf3c3|98488|general transcription factor IIIC, polypeptide 3	AK145040|Gtf3c3|98488|general transcription factor IIIC, polypeptide 3	AK165830|Gtf3c3|98488|general transcription factor IIIC, polypeptide 3	NM_001033194|Gtf3c3|98488|general transcription factor IIIC, polypeptide 3
mm9_v1_chr14_+_119379780_119379927	0.0344179	CDX1,2,4.p2	
mm9_v1_chr15_-_3945704_3945774	0.0342534	CDX1,2,4.p2	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr11_-_120501183_120501260	0.0341493	CDX1,2,4.p2	
mm9_v1_chr7_+_87391261_87391440	0.0341355	CDX1,2,4.p2	AK029565|Ttll13|269954|tubulin tyrosine ligase-like family, member 13	NM_177765|Ttll13|269954|tubulin tyrosine ligase-like family, member 13	AK007167|Ttll13|269954|tubulin tyrosine ligase-like family, member 13	AK161519|Ttll13|269954|tubulin tyrosine ligase-like family, member 13
mm9_v1_chr2_+_38441497_38441644	0.0340338	CDX1,2,4.p2	AK214670|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6	AK208733|Nek6|59126|NIMA (never in mitosis gene a)-related expressed kinase 6
mm9_v1_chr15_+_4105188_4105206	0.0340114	CDX1,2,4.p2	
mm9_v1_chr11_+_80022524_80022572	0.0339929	CDX1,2,4.p2	AK147801|Rhot1|59040|ras homolog gene family, member T1	AK167502|Rhot1|59040|ras homolog gene family, member T1	NM_001163354|Rhot1|59040|ras homolog gene family, member T1	NM_001163355|Rhot1|59040|ras homolog gene family, member T1	NM_021536|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr8_+_112302530_112302620	0.0339437	CDX1,2,4.p2	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr1_+_173612173_173612224	0.0337286	CDX1,2,4.p2	X17501|Cd48|12506|CD48 antigen	X53526|Cd48|12506|CD48 antigen	AK007741|Cd48|12506|CD48 antigen	NM_007649|Cd48|12506|CD48 antigen	AK151601|Cd48|12506|CD48 antigen	AB196820|Cd48|12506|CD48 antigen	AB196821|Cd48|12506|CD48 antigen	AB196822|Cd48|12506|CD48 antigen	AB196823|Cd48|12506|CD48 antigen
mm9_v1_chrX_-_20639111_20639168	0.0336283	CDX1,2,4.p2	AK155039|Zfp182|319535|zinc finger protein 182	BC063066|Zfp182|319535|zinc finger protein 182	AK045698|Zfp182|319535|zinc finger protein 182	NM_001013387|Zfp182|319535|zinc finger protein 182	NM_001111076|Zfp182|319535|zinc finger protein 182	AK043973|Zfp182|319535|zinc finger protein 182
mm9_v1_chr13_-_21560348_21560369	0.033388	CDX1,2,4.p2	AK015912|Nkapl|66707|NFKB activating protein-like	AK014812|Nkapl|66707|NFKB activating protein-like	BC048457|Nkapl|66707|NFKB activating protein-like	BC089537|Nkapl|66707|NFKB activating protein-like	BC061080|Nkapl|66707|NFKB activating protein-like	BC099550|Nkapl|66707|NFKB activating protein-like	NM_025719|Nkapl|66707|NFKB activating protein-like
mm9_v1_chr6_-_136752898_136752939	0.0333856	CDX1,2,4.p2	BC111813|Hist4h4|320332|histone cluster 4, H4	NM_175652|Hist4h4|320332|histone cluster 4, H4	AK045187|Hist4h4|320332|histone cluster 4, H4
mm9_v1_chrM_+_9458_9465	0.0330862	CDX1,2,4.p2	AK139029|ND3|17718|NADH dehydrogenase subunit 3
mm9_v1_chr8_+_107607652_107607676	0.0330554	CDX1,2,4.p2	NM_001159415|Ces3b|13909|carboxylesterase 3B	NM_144511|Ces3b|13909|carboxylesterase 3B	BC019147|Ces3b|13909|carboxylesterase 3B	BC010812|Ces3b|13909|carboxylesterase 3B	BC019926|Ces3b|13909|carboxylesterase 3B
mm9_v1_chr4_+_126803283_126803296	0.0330438	CDX1,2,4.p2	AK160613|Gm12942|100039968|predicted gene 12942	NM_001099319|Gm12942|100039968|predicted gene 12942
mm9_v1_chr12_+_8944952_8945067	0.0330015	CDX1,2,4.p2	
mm9_v1_chr14_+_70945119_70945160	0.032982	CDX1,2,4.p2	AK012301|Reep4|72549|receptor accessory protein 4
mm9_v1_chr11_+_60955985_60956002	0.0328043	CDX1,2,4.p2	AK155178|Tnfrsf13b|57916|tumor necrosis factor receptor superfamily, member 13b
mm9_v1_chr3_+_136333793_136333805	0.0326842	CDX1,2,4.p2	BC096652|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr1_-_145454821_145454855	0.0325797	CDX1,2,4.p2	AK029710|Cdc73|214498|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr2_-_9981155_9981246	0.0325295	CDX1,2,4.p2	AK187037|Atp5c1|11949|ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
mm9_v1_chr6_-_137118197_137118219	0.032494	CDX1,2,4.p2	AK028025|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	AK133734|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr18_-_72367655_72367683	0.0324698	CDX1,2,4.p2	
mm9_v1_chr6_-_35276109_35276143	0.0323105	CDX1,2,4.p2	BC064033|Fam180a|208164|family with sequence similarity 180, member A	AK045849|Fam180a|208164|family with sequence similarity 180, member A	AK157966|Fam180a|208164|family with sequence similarity 180, member A	NM_173375|Fam180a|208164|family with sequence similarity 180, member A
mm9_v1_chr17_+_36974055_36974078	0.032204	CDX1,2,4.p2	AK142476|Trim26|22670|tripartite motif-containing 26
mm9_v1_chr11_+_93905557_93905590	0.0321435	CDX1,2,4.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr4_-_96330738_96330780	0.0321234	CDX1,2,4.p2	AK098119|Cyp2j5|13109|cytochrome P450, family 2, subfamily j, polypeptide 5	U62294|Cyp2j5|13109|cytochrome P450, family 2, subfamily j, polypeptide 5	BC021624|Cyp2j5|13109|cytochrome P450, family 2, subfamily j, polypeptide 5	AK149552|Cyp2j5|13109|cytochrome P450, family 2, subfamily j, polypeptide 5
mm9_v1_chr17_-_34077154_34077262	0.0320762	CDX1,2,4.p2	AK177303|H2-Ke2|14976|H2-K region expressed gene 2	M65255|H2-Ke2|14976|H2-K region expressed gene 2	BC022974|H2-Ke2|14976|H2-K region expressed gene 2
mm9_v1_chr13_+_55827167_55827225	0.0320563	CDX1,2,4.p2	AK209800|Txndc15|69672|thioredoxin domain containing 15	AK213704|Txndc15|69672|thioredoxin domain containing 15	AK206830|Txndc15|69672|thioredoxin domain containing 15
mm9_v1_chr11_+_104189978_104190032	0.0319548	CDX1,2,4.p2	AK135147|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr10_+_128227964_128228056	0.0319508	CDX1,2,4.p2	AK079924|Mmp19|58223|matrix metallopeptidase 19	NM_001164197|Mmp19|58223|matrix metallopeptidase 19	AK080125|Mmp19|58223|matrix metallopeptidase 19	AK136517|Mmp19|58223|matrix metallopeptidase 19	NM_021412|Mmp19|58223|matrix metallopeptidase 19	AK154863|Mmp19|58223|matrix metallopeptidase 19	AF155221|Mmp19|58223|matrix metallopeptidase 19	AF162446|Mmp19|58223|matrix metallopeptidase 19	BC112966|Mmp19|58223|matrix metallopeptidase 19	AF153199|Mmp19|58223|matrix metallopeptidase 19
mm9_v1_chr8_-_25934840_25934840	0.0318346	CDX1,2,4.p2	AK161262|Adam5|11499|a disintegrin and metallopeptidase domain 5	NM_007401|Adam5|11499|a disintegrin and metallopeptidase domain 5
mm9_v1_chr6_-_113465872_113465930	0.0317987	CDX1,2,4.p2	
mm9_v1_chr2_-_38080023_38080025	0.0317849	CDX1,2,4.p2	AK033323|8030493G06Rik|320880|RIKEN cDNA 8030493G06 gene
mm9_v1_chr5_+_124933122_124933232	0.0316826	CDX1,2,4.p2	AK039064|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	BC043031|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	BC058361|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	NM_029532|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)	AK018232|Snrnp35|76167|small nuclear ribonucleoprotein 35 (U11/U12)
mm9_v1_chr10_+_4978808_4978917	0.0316602	CDX1,2,4.p2	AK148504|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr2_-_143814199_143814217	0.031637	CDX1,2,4.p2	AK019964|Rrbp1|81910|ribosome binding protein 1
mm9_v1_chr7_-_107128967_107128967	0.0316023	CDX1,2,4.p2	NM_175388|Rnf169|108937|ring finger protein 169
mm9_v1_chr5_+_122822549_122822598	0.0315252	CDX1,2,4.p2	AK087968|Gpn3|68080|GPN-loop GTPase 3	AK080720|Gpn3|68080|GPN-loop GTPase 3	AK146783|Gpn3|68080|GPN-loop GTPase 3	AK016996|Gpn3|68080|GPN-loop GTPase 3
mm9_v1_chr7_-_134550257_134550335	0.0312768	CDX1,2,4.p2	BC026397|Zfp764|233893|zinc finger protein 764	AK053795|Zfp764|233893|zinc finger protein 764	AK033218|Zfp764|233893|zinc finger protein 764	AK042873|Zfp764|233893|zinc finger protein 764	NM_001167832|Zfp764|233893|zinc finger protein 764	NM_146203|Zfp764|233893|zinc finger protein 764
mm9_v1_chr11_+_83164638_83164673	0.031211	CDX1,2,4.p2	
mm9_v1_chr18_+_6765174_6765262	0.0311375	CDX1,2,4.p2	AK154920|Rab18|19330|RAB18, member RAS oncogene family	AK143673|Rab18|19330|RAB18, member RAS oncogene family	AK140901|Rab18|19330|RAB18, member RAS oncogene family	AK045514|Rab18|19330|RAB18, member RAS oncogene family	NM_181070|Rab18|19330|RAB18, member RAS oncogene family	BC056351|Rab18|19330|RAB18, member RAS oncogene family	AK146177|Rab18|19330|RAB18, member RAS oncogene family	AK146397|Rab18|19330|RAB18, member RAS oncogene family	L04966|Rab18|19330|RAB18, member RAS oncogene family	AB232612|Rab18|19330|RAB18, member RAS oncogene family	M79308|Rab18|19330|RAB18, member RAS oncogene family	X80333|Rab18|19330|RAB18, member RAS oncogene family
mm9_v1_chr9_+_65738150_65738159	0.0311211	CDX1,2,4.p2	AK012140|2810417H13Rik|68026|RIKEN cDNA 2810417H13 gene
mm9_v1_chr7_+_25689359_25689364	0.0309132	CDX1,2,4.p2	NM_001130152|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr17_+_36974084_36974137	0.0308603	CDX1,2,4.p2	AK171019|Trim26|22670|tripartite motif-containing 26	NM_001025599|Trim26|22670|tripartite motif-containing 26	AK042252|Trim26|22670|tripartite motif-containing 26	BC037110|Trim26|22670|tripartite motif-containing 26
mm9_v1_chr13_+_43497279_43497424	0.0308081	CDX1,2,4.p2	AK140839|Nol7|70078|nucleolar protein 7
mm9_v1_chr6_-_21802514_21802514	0.0306934	CDX1,2,4.p2	AK050737|Tspan12|269831|tetraspanin 12	NM_173007|Tspan12|269831|tetraspanin 12
mm9_v1_chr17_-_12888210_12888210	0.0306817	CDX1,2,4.p2	AK053045|Igf2r|16004|insulin-like growth factor 2 receptor
mm9_v1_chr7_-_39012977_39013015	0.0306731	CDX1,2,4.p2	BC002120|Plekhf1|72287|pleckstrin homology domain containing, family F (with FYVE domain) member 1	AK143976|Plekhf1|72287|pleckstrin homology domain containing, family F (with FYVE domain) member 1	AK157990|Plekhf1|72287|pleckstrin homology domain containing, family F (with FYVE domain) member 1	AK171398|Plekhf1|72287|pleckstrin homology domain containing, family F (with FYVE domain) member 1	AK170283|Plekhf1|72287|pleckstrin homology domain containing, family F (with FYVE domain) member 1	NM_024413|Plekhf1|72287|pleckstrin homology domain containing, family F (with FYVE domain) member 1
mm9_v1_chr7_+_19918350_19918477	0.0306306	CDX1,2,4.p2	
mm9_v1_chr6_-_23600205_23600304	0.0302727	CDX1,2,4.p2	BC116423|Rnf133|386611|ring finger protein 133	BC116424|Rnf133|386611|ring finger protein 133	AK028082|Rnf133|386611|ring finger protein 133	NM_198251|Rnf133|386611|ring finger protein 133
mm9_v1_chr9_+_64129387_64129441	0.0300503	CDX1,2,4.p2	AK038111|Tipin|66131|timeless interacting protein	AK003451|Tipin|66131|timeless interacting protein	AK003802|Tipin|66131|timeless interacting protein	AK011357|Tipin|66131|timeless interacting protein	NM_025372|Tipin|66131|timeless interacting protein	BC016211|Tipin|66131|timeless interacting protein
mm9_v1_chr3_+_108060061_108060131	0.0300225	CDX1,2,4.p2	AK160741|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160530|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160550|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK161680|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC007181|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC010709|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC083342|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC108368|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AF019661|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5
mm9_v1_chr1_+_162125349_162125420	0.0299809	CDX1,2,4.p2	AK007673|Mrps14|64659|mitochondrial ribosomal protein S14	AK010242|Mrps14|64659|mitochondrial ribosomal protein S14	AK144195|Mrps14|64659|mitochondrial ribosomal protein S14	AK083352|Mrps14|64659|mitochondrial ribosomal protein S14	NM_025474|Mrps14|64659|mitochondrial ribosomal protein S14	BC044057|Mrps14|64659|mitochondrial ribosomal protein S14
mm9_v1_chr1_+_152239986_152240102	0.0298955	CDX1,2,4.p2	BC141406|Tpr|108989|translocated promoter region	BC141410|Tpr|108989|translocated promoter region
mm9_v1_chr7_+_19876447_19876478	0.0296297	CDX1,2,4.p2	NM_001025364|Rtn2|20167|reticulon 2 (Z-band associated protein)	AK160500|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038539|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr6_+_106719113_106719221	0.0296231	CDX1,2,4.p2	AK135791|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK010662|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AB063106|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK152739|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	BC031764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	NM_027296|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK011764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK166804|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK139764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1
mm9_v1_chr17_+_71168939_71168940	0.0295818	CDX1,2,4.p2	AK034215|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr5_+_32761426_32761470	0.0295685	CDX1,2,4.p2	AK166168|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166623|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK168141|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr11_-_102178559_102178600	0.0295035	CDX1,2,4.p2	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr2_+_36086059_36086082	0.0292987	CDX1,2,4.p2	AK134163|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AY547265|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	CT010314|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr15_+_6395353_6395370	0.0292929	CDX1,2,4.p2	X05475|C9|12279|complement component 9
mm9_v1_chr17_+_24563575_24563652	0.0292575	CDX1,2,4.p2	AK004838|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	AK029481|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	NM_010023|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	AK077386|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	BC054444|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	BC022712|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)	Z14049|Dci|13177|dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenyme A isomerase)
mm9_v1_chr14_-_21552866_21552879	0.0291537	CDX1,2,4.p2	AK202625|Ndst2|17423|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
mm9_v1_chr15_-_75672300_75672387	0.0291327	CDX1,2,4.p2	BC060682|Zc3h3|223642|zinc finger CCCH type containing 3	AJ516034|Zc3h3|223642|zinc finger CCCH type containing 3	BC111448|Zc3h3|223642|zinc finger CCCH type containing 3	NM_172121|Zc3h3|223642|zinc finger CCCH type containing 3	AK138281|Zc3h3|223642|zinc finger CCCH type containing 3
mm9_v1_chr7_-_15023845_15023901	0.029113	CDX1,2,4.p2	BC031851|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK050422|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr8_+_125927389_125927433	0.0290815	CDX1,2,4.p2	
mm9_v1_chr7_+_97177668_97177676	0.0289948	CDX1,2,4.p2	AK165252|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK157435|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene	AK046045|E230029C05Rik|319711|RIKEN cDNA E230029C05 gene
mm9_v1_chr4_-_135609279_135609318	0.0288863	CDX1,2,4.p2	AK011211|Rpl11|67025|ribosomal protein L11	AK011800|Rpl11|67025|ribosomal protein L11	AK169053|Rpl11|67025|ribosomal protein L11	AK002998|Rpl11|67025|ribosomal protein L11	AK008422|Rpl11|67025|ribosomal protein L11	AK013923|Rpl11|67025|ribosomal protein L11	AK014593|Rpl11|67025|ribosomal protein L11	AK153486|Rpl11|67025|ribosomal protein L11	AK164445|Rpl11|67025|ribosomal protein L11	NM_025919|Rpl11|67025|ribosomal protein L11	AK088967|Rpl11|67025|ribosomal protein L11
mm9_v1_chr1_-_122167658_122167658	0.0288758	CDX1,2,4.p2	AK167028|Steap3|68428|STEAP family member 3	NM_001085409|Steap3|68428|STEAP family member 3
mm9_v1_chr10_+_88194153_88194296	0.0288567	CDX1,2,4.p2	AK018138|Arl1|104303|ADP-ribosylation factor-like 1	AK010732|Arl1|104303|ADP-ribosylation factor-like 1	NM_025859|Arl1|104303|ADP-ribosylation factor-like 1	AK167748|Arl1|104303|ADP-ribosylation factor-like 1	BC096684|Arl1|104303|ADP-ribosylation factor-like 1
mm9_v1_chr9_-_106378454_106378490	0.0288395	CDX1,2,4.p2	BC058754|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr17_+_21703971_21704009	0.0287925	CDX1,2,4.p2	AK164108|Zfp948|381066|zinc finger protein 948	BC049807|Zfp948|381066|zinc finger protein 948	BC076634|Zfp948|381066|zinc finger protein 948	NM_001002008|Zfp948|381066|zinc finger protein 948
mm9_v1_chr2_+_172198490_172198574	0.0287778	CDX1,2,4.p2	AK177487|Cstf1|67337|cleavage stimulation factor, 3' pre-RNA, subunit 1
mm9_v1_chr8_+_75103478_75103489	0.0287526	CDX1,2,4.p2	AK186226|Tmem38a|74166|transmembrane protein 38A	AK210010|Tmem38a|74166|transmembrane protein 38A	AK210187|Tmem38a|74166|transmembrane protein 38A	AK215082|Tmem38a|74166|transmembrane protein 38A
mm9_v1_chr11_-_100565382_100565591	0.0287317	CDX1,2,4.p2	AF316999|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	BC029209|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK153342|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK021012|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	NM_030150|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58
mm9_v1_chr8_+_13339673_13339702	0.0287175	CDX1,2,4.p2	NM_009361|Tfdp1|21781|transcription factor Dp 1	X72310|Tfdp1|21781|transcription factor Dp 1	BC132567|Tfdp1|21781|transcription factor Dp 1	BC132569|Tfdp1|21781|transcription factor Dp 1	BC145344|Tfdp1|21781|transcription factor Dp 1
mm9_v1_chr1_+_9838330_9838477	0.0283696	CDX1,2,4.p2	AK030314|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_001037759|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166531|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK146561|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031328|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171959|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr12_+_105644917_105644968	0.0283404	CDX1,2,4.p2	NM_009252|Serpina3n|20716|serine (or cysteine) peptidase inhibitor, clade A, member 3N	BC013651|Serpina3n|20716|serine (or cysteine) peptidase inhibitor, clade A, member 3N	M64086|Serpina3n|20716|serine (or cysteine) peptidase inhibitor, clade A, member 3N
mm9_v1_chr1_+_52687548_52687638	0.0282541	CDX1,2,4.p2	NM_001142647|Tmem194b|227094|transmembrane protein 194B	AK030361|Tmem194b|227094|transmembrane protein 194B	AK036693|Tmem194b|227094|transmembrane protein 194B	AK048484|Tmem194b|227094|transmembrane protein 194B	AK170577|Tmem194b|227094|transmembrane protein 194B	AK086801|Tmem194b|227094|transmembrane protein 194B
mm9_v1_chr1_-_153317422_153317565	0.028212	CDX1,2,4.p2	AK211660|Rnf2|19821|ring finger protein 2
mm9_v1_chr4_-_118951578_118951709	0.0282085	CDX1,2,4.p2	AK213628|Ybx1|22608|Y box protein 1	AK181881|Ybx1|22608|Y box protein 1	AK197905|Ybx1|22608|Y box protein 1
mm9_v1_chr2_+_74695081_74695176	0.0280391	CDX1,2,4.p2	
mm9_v1_chr5_-_87335956_87335985	0.027951	CDX1,2,4.p2	BC028826|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	NM_153598|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	AK145951|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34
mm9_v1_chr11_+_80022584_80022586	0.0278651	CDX1,2,4.p2	AK032096|Rhot1|59040|ras homolog gene family, member T1	AK054472|Rhot1|59040|ras homolog gene family, member T1
mm9_v1_chr9_+_92144928_92145085	0.0277912	CDX1,2,4.p2	AK137603|Plscr1|22038|phospholipid scramblase 1	NM_011636|Plscr1|22038|phospholipid scramblase 1	AF159593|Plscr1|22038|phospholipid scramblase 1
mm9_v1_chr9_-_71326295_71326316	0.0276801	CDX1,2,4.p2	
mm9_v1_chr17_+_33226311_33226311	0.0276285	CDX1,2,4.p2	NM_001024950|Zfp563|240068|zinc finger protein 563
mm9_v1_chr15_+_79501284_79501317	0.0274661	CDX1,2,4.p2	AK008133|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK009868|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	NM_172609|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150787|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK013471|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK049442|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK150360|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK152843|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	AK167803|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)	BC056920|Tomm22|223696|translocase of outer mitochondrial membrane 22 homolog (yeast)
mm9_v1_chr12_+_79962998_79963115	0.0273229	CDX1,2,4.p2	BC016448|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	BC016497|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	AK143499|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	NM_026114|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	AK167763|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha	BC005463|Eif2s1|13665|eukaryotic translation initiation factor 2, subunit 1 alpha
mm9_v1_chr19_+_9023469_9023512	0.0270824	CDX1,2,4.p2	AK180875|Mta2|23942|metastasis-associated gene family, member 2	AK185607|Mta2|23942|metastasis-associated gene family, member 2	AK210254|Mta2|23942|metastasis-associated gene family, member 2	AK211099|Mta2|23942|metastasis-associated gene family, member 2	AK218258|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr4_+_137797490_137797591	0.0270502	CDX1,2,4.p2	
mm9_v1_chr9_-_7872896_7873169	0.0269338	CDX1,2,4.p2	AK172636|Birc3|11796|baculoviral IAP repeat-containing 3	BC011338|Birc3|11796|baculoviral IAP repeat-containing 3	U88908|Birc3|11796|baculoviral IAP repeat-containing 3	AK162108|Birc3|11796|baculoviral IAP repeat-containing 3	NM_007464|Birc3|11796|baculoviral IAP repeat-containing 3
mm9_v1_chr16_+_30065419_30065442	0.0269304	CDX1,2,4.p2	AK133538|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	AK132536|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC018375|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC051428|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	NM_008235|Hes1|15205|hairy and enhancer of split 1 (Drosophila)
mm9_v1_chr8_+_109459623_109459679	0.0267698	CDX1,2,4.p2	AK131687|Sntb2|20650|syntrophin, basic 2	AK040423|Sntb2|20650|syntrophin, basic 2	AK165009|Sntb2|20650|syntrophin, basic 2	NM_009229|Sntb2|20650|syntrophin, basic 2	BC138850|Sntb2|20650|syntrophin, basic 2	BC145442|Sntb2|20650|syntrophin, basic 2	U00678|Sntb2|20650|syntrophin, basic 2	AK080059|Sntb2|20650|syntrophin, basic 2	AK165900|Sntb2|20650|syntrophin, basic 2
mm9_v1_chr5_-_39076043_39076064	0.0267407	CDX1,2,4.p2	NM_001081144|Zfp518b|100515|zinc finger protein 518B	NM_001177902|Zfp518b|100515|zinc finger protein 518B
mm9_v1_chr11_+_54683866_54683920	0.0266445	CDX1,2,4.p2	
mm9_v1_chr7_-_56136965_56137089	0.0266033	CDX1,2,4.p2	AY957576|E2f8|108961|E2F transcription factor 8
mm9_v1_chr16_-_33967064_33967149	0.0265776	CDX1,2,4.p2	BC003887|Umps|22247|uridine monophosphate synthetase	BC095981|Umps|22247|uridine monophosphate synthetase	AK159808|Umps|22247|uridine monophosphate synthetase	AK159955|Umps|22247|uridine monophosphate synthetase	AK035821|Umps|22247|uridine monophosphate synthetase	AK035997|Umps|22247|uridine monophosphate synthetase	AK090102|Umps|22247|uridine monophosphate synthetase	AK135187|Umps|22247|uridine monophosphate synthetase	NM_009471|Umps|22247|uridine monophosphate synthetase
mm9_v1_chr10_+_7445867_7445883	0.0263825	CDX1,2,4.p2	BC009136|Katna1|23924|katanin p60 (ATPase-containing) subunit A1
mm9_v1_chr12_-_88067400_88067409	0.0263319	CDX1,2,4.p2	BC019148|Angel1|68737|angel homolog 1 (Drosophila)	AK143549|Angel1|68737|angel homolog 1 (Drosophila)	NM_144524|Angel1|68737|angel homolog 1 (Drosophila)
mm9_v1_chr7_+_147020072_147020194	0.0260419	CDX1,2,4.p2	NM_177469|Gpr123|52389|G protein-coupled receptor 123	AK082207|Gpr123|52389|G protein-coupled receptor 123
mm9_v1_chr7_+_73194834_73194897	0.0259063	CDX1,2,4.p2	AF008223|Pcsk6|18553|proprotein convertase subtilisin/kexin type 6
mm9_v1_chr2_+_148515898_148515954	0.0256351	CDX1,2,4.p2	AK208985|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr6_-_42595033_42595066	0.025543	CDX1,2,4.p2	BC011487|Fam115c|232748|family with sequence similarity 115, member C	NM_146174|Fam115c|232748|family with sequence similarity 115, member C	BC008555|Fam115c|232748|family with sequence similarity 115, member C	AK084364|Fam115c|232748|family with sequence similarity 115, member C
mm9_v1_chr17_-_47639222_47639245	0.0255231	CDX1,2,4.p2	BC057895|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	BC023756|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AF222802|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK045108|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK049949|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK076486|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK086656|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK161658|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	AK162110|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq	NM_022015|Taf8|63856|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq
mm9_v1_chrX_+_72627673_72627773	0.0255195	CDX1,2,4.p2	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr2_-_125331769_125331823	0.0254763	CDX1,2,4.p2	AK046621|Fbn1|14118|fibrillin 1
mm9_v1_chr1_-_134036041_134036303	0.025423	CDX1,2,4.p2	AK171569|Cdk18|18557|cyclin-dependent kinase 18	BC119617|Cdk18|18557|cyclin-dependent kinase 18	BC119618|Cdk18|18557|cyclin-dependent kinase 18	AK004998|Cdk18|18557|cyclin-dependent kinase 18	X69026|Cdk18|18557|cyclin-dependent kinase 18	NM_008795|Cdk18|18557|cyclin-dependent kinase 18
mm9_v1_chr10_-_60609031_60609082	0.0254212	CDX1,2,4.p2	CT010214|Sgpl1|20397|sphingosine phosphate lyase 1
mm9_v1_chr18_+_38611212_38611226	0.0254032	CDX1,2,4.p2	
mm9_v1_chr18_-_49915209_49915277	0.0253931	CDX1,2,4.p2	BC139347|Dtwd2|68857|DTW domain containing 2	BC139348|Dtwd2|68857|DTW domain containing 2	BC145608|Dtwd2|68857|DTW domain containing 2	BC145609|Dtwd2|68857|DTW domain containing 2	AK004450|Dtwd2|68857|DTW domain containing 2	AK144689|Dtwd2|68857|DTW domain containing 2	NM_001170960|Dtwd2|68857|DTW domain containing 2	NM_026854|Dtwd2|68857|DTW domain containing 2
mm9_v1_chr5_-_135391315_135391362	0.025332	CDX1,2,4.p2	BC115481|Cldn13|57255|claudin 13	BC115482|Cldn13|57255|claudin 13
mm9_v1_chr8_+_109417539_109417610	0.0253191	CDX1,2,4.p2	NM_011574|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	BC068113|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK144455|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK146263|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK150862|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK168470|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)	AK173318|Cirh1a|21771|cirrhosis, autosomal recessive 1A (human)
mm9_v1_chr4_+_15885062_15885148	0.0252885	CDX1,2,4.p2	AK132302|Nbn|27354|nibrin	AK134805|Nbn|27354|nibrin	AK134960|Nbn|27354|nibrin	AK159790|Nbn|27354|nibrin	BC013190|Nbn|27354|nibrin	NM_013752|Nbn|27354|nibrin	BC044773|Nbn|27354|nibrin	AF076687|Nbn|27354|nibrin	BC055061|Nbn|27354|nibrin	AK031933|Nbn|27354|nibrin	AF092840|Nbn|27354|nibrin	AK160614|Nbn|27354|nibrin
mm9_v1_chr6_-_4036892_4036992	0.0252083	CDX1,2,4.p2	AF007552|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	AK078796|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	BC005572|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	NM_009748|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	AK053940|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)
mm9_v1_chr19_-_14671832_14671910	0.0251503	CDX1,2,4.p2	AF229633|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr4_+_140528820_140528899	0.0249551	CDX1,2,4.p2	AF095936|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	AK190493|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
mm9_v1_chr10_+_12728252_12728328	0.0249052	CDX1,2,4.p2	NM_175102|Sf3b5|66125|splicing factor 3b, subunit 5	BC006603|Sf3b5|66125|splicing factor 3b, subunit 5	AK010348|Sf3b5|66125|splicing factor 3b, subunit 5	AK003475|Sf3b5|66125|splicing factor 3b, subunit 5	AK009874|Sf3b5|66125|splicing factor 3b, subunit 5
mm9_v1_chr1_-_174563092_174563154	0.0248216	CDX1,2,4.p2	AB183013|Dusp23|68440|dual specificity phosphatase 23	BC069187|Dusp23|68440|dual specificity phosphatase 23	NM_026725|Dusp23|68440|dual specificity phosphatase 23
mm9_v1_chr6_-_145024596_145024703	0.0245034	CDX1,2,4.p2	BC053706|Bcat1|12035|branched chain aminotransferase 1, cytosolic	X17502|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK167232|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK166971|Bcat1|12035|branched chain aminotransferase 1, cytosolic	NM_007532|Bcat1|12035|branched chain aminotransferase 1, cytosolic	AK168249|Bcat1|12035|branched chain aminotransferase 1, cytosolic
mm9_v1_chr8_-_19893102_19893120	0.0244816	CDX1,2,4.p2	AK030539|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr4_-_133101912_133101941	0.0244428	CDX1,2,4.p2	NM_010948|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr17_+_66460884_66460915	0.0243138	CDX1,2,4.p2	NM_026833|ORF19|68767|open reading frame 19
mm9_v1_chr2_+_69588414_69588564	0.0241787	CDX1,2,4.p2	AK079931|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK045812|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr11_-_115229039_115229044	0.0240631	CDX1,2,4.p2	AK138882|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chr2_+_14978339_14978456	0.024043	CDX1,2,4.p2	
mm9_v1_chr17_+_33961535_33961572	0.0240337	CDX1,2,4.p2	AK002476|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	AK003468|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	BC055698|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	BC052817|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	NM_023202|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	AK010299|Ndufa7|66416|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)
mm9_v1_chr2_-_62249934_62250287	0.0239689	CDX1,2,4.p2	X58384|Dpp4|13482|dipeptidylpeptidase 4	AK040409|Dpp4|13482|dipeptidylpeptidase 4	BC022183|Dpp4|13482|dipeptidylpeptidase 4	AK163085|Dpp4|13482|dipeptidylpeptidase 4	NM_001159543|Dpp4|13482|dipeptidylpeptidase 4	NM_010074|Dpp4|13482|dipeptidylpeptidase 4
mm9_v1_chr6_+_56935288_56935335	0.0239247	CDX1,2,4.p2	BC138068|Vmn1r5|171192|vomeronasal 1 receptor 5	BC138069|Vmn1r5|171192|vomeronasal 1 receptor 5	NM_134174|Vmn1r5|171192|vomeronasal 1 receptor 5
mm9_v1_chr8_+_72696276_72696336	0.0237248	CDX1,2,4.p2	AK032711|Tmem161a|234371|transmembrane protein 161A	AK082916|Tmem161a|234371|transmembrane protein 161A	AK049979|Tmem161a|234371|transmembrane protein 161A	NM_145597|Tmem161a|234371|transmembrane protein 161A	AK082758|Tmem161a|234371|transmembrane protein 161A	AK147962|Tmem161a|234371|transmembrane protein 161A	AK088569|Tmem161a|234371|transmembrane protein 161A	AK167517|Tmem161a|234371|transmembrane protein 161A	BC021367|Tmem161a|234371|transmembrane protein 161A
mm9_v1_chr11_-_97857184_97857252	0.0237124	CDX1,2,4.p2	AK154137|Arl5c|217151|ADP-ribosylation factor-like 5C	AK032519|Arl5c|217151|ADP-ribosylation factor-like 5C
mm9_v1_chr18_+_78020588_78020649	0.0236561	CDX1,2,4.p2	AK180896|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK184454|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK214653|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK214982|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK215077|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr4_-_46417054_46417104	0.0235747	CDX1,2,4.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr19_+_29441927_29441979	0.0235399	CDX1,2,4.p2	NM_021893|Cd274|60533|CD274 antigen	BC066841|Cd274|60533|CD274 antigen	AK080003|Cd274|60533|CD274 antigen	AK154403|Cd274|60533|CD274 antigen	AK089307|Cd274|60533|CD274 antigen
mm9_v1_chr16_+_33185137_33185252	0.0233236	CDX1,2,4.p2	BC035278|Osbpl11|106326|oxysterol binding protein-like 11	NM_176840|Osbpl11|106326|oxysterol binding protein-like 11	BC099400|Osbpl11|106326|oxysterol binding protein-like 11
mm9_v1_chr10_-_102698899_102698955	0.0228725	CDX1,2,4.p2	AK158531|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	BC051400|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	AK015687|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	NM_001163559|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1	NM_029134|Lrriq1|74978|leucine-rich repeats and IQ motif containing 1
mm9_v1_chr1_+_9788206_9788302	0.0228591	CDX1,2,4.p2	NM_133220|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_177547|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK143836|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031133|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151793|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171120|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171186|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151867|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171678|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK172323|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK028722|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039247|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039427|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151181|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166414|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151996|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AF312007|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr2_-_51790671_51790711	0.0227267	CDX1,2,4.p2	AK002739|Rbm43|71684|RNA binding motif protein 43
mm9_v1_chr9_+_15309938_15309938	0.0224483	CDX1,2,4.p2	AF197136|BC017612|170748|cDNA sequence BC017612	NM_133214|BC017612|170748|cDNA sequence BC017612
mm9_v1_chr9_+_107483603_107483637	0.0223631	CDX1,2,4.p2	BC018457|Hyal3|109685|hyaluronoglucosaminidase 3	NM_178020|Hyal3|109685|hyaluronoglucosaminidase 3	AY048681|Hyal3|109685|hyaluronoglucosaminidase 3
mm9_v1_chr3_+_133902563_133902608	0.0220824	CDX1,2,4.p2	BC082332|Cxxc4|319478|CXXC finger 4
mm9_v1_chr11_-_101413104_101413268	0.0219821	CDX1,2,4.p2	BC068303|Brca1|12189|breast cancer 1	U31625|Brca1|12189|breast cancer 1	U35641|Brca1|12189|breast cancer 1	U68174|Brca1|12189|breast cancer 1	U32446|Brca1|12189|breast cancer 1	AK144702|Brca1|12189|breast cancer 1	AK086173|Brca1|12189|breast cancer 1	NM_009764|Brca1|12189|breast cancer 1
mm9_v1_chrX_-_165092598_165092599	0.0219627	CDX1,2,4.p2	AK053927|Msl3|17692|male-specific lethal 3 homolog (Drosophila)
mm9_v1_chrX_+_93435278_93435304	0.0219508	CDX1,2,4.p2	AK170206|F630028O10Rik|100038363|RIKEN cDNA F630028O10 gene	AK036748|F630028O10Rik|100038363|RIKEN cDNA F630028O10 gene
mm9_v1_chr1_+_169548381_169548439	0.0219385	CDX1,2,4.p2	NM_001159731|Rxrg|20183|retinoid X receptor gamma	S62952|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr10_+_119645800_119645892	0.0219367	CDX1,2,4.p2	BC027637|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK039270|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK153442|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK162942|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK006207|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	NM_026617|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4
mm9_v1_chr15_+_35860580_35860704	0.0218289	CDX1,2,4.p2	AK007749|Vps13b|666173|vacuolar protein sorting 13B (yeast)
mm9_v1_chr8_-_110112260_110112344	0.0217985	CDX1,2,4.p2	AK146128|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	M64641|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	AK031013|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	AK159825|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	AK012463|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
mm9_v1_chr14_+_8912873_8912900	0.0216112	CDX1,2,4.p2	AK012105|Rpp14|67053|ribonuclease P 14 subunit (human)	AK016631|Rpp14|67053|ribonuclease P 14 subunit (human)	BC026988|Rpp14|67053|ribonuclease P 14 subunit (human)	BC046803|Rpp14|67053|ribonuclease P 14 subunit (human)
mm9_v1_chr17_-_25934035_25934080	0.0216092	CDX1,2,4.p2	BC132177|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr2_+_28323580_28323619	0.021549	CDX1,2,4.p2	AK051184|Mrps2|118451|mitochondrial ribosomal protein S2	AK172120|Mrps2|118451|mitochondrial ribosomal protein S2	NM_001166031|Mrps2|118451|mitochondrial ribosomal protein S2	NM_080452|Mrps2|118451|mitochondrial ribosomal protein S2	AK154131|Mrps2|118451|mitochondrial ribosomal protein S2	AB055389|Mrps2|118451|mitochondrial ribosomal protein S2	AK160129|Mrps2|118451|mitochondrial ribosomal protein S2	AK165956|Mrps2|118451|mitochondrial ribosomal protein S2	AK156412|Mrps2|118451|mitochondrial ribosomal protein S2	AK171699|Mrps2|118451|mitochondrial ribosomal protein S2	AK172432|Mrps2|118451|mitochondrial ribosomal protein S2	BC048377|Mrps2|118451|mitochondrial ribosomal protein S2	BC033460|Mrps2|118451|mitochondrial ribosomal protein S2	BC060503|Mrps2|118451|mitochondrial ribosomal protein S2
mm9_v1_chr5_-_92864088_92864269	0.0215457	CDX1,2,4.p2	AK150841|Nup54|269113|nucleoporin 54	AK151896|Nup54|269113|nucleoporin 54	AK152136|Nup54|269113|nucleoporin 54	BC068114|Nup54|269113|nucleoporin 54	AK014260|Nup54|269113|nucleoporin 54	AK087827|Nup54|269113|nucleoporin 54	BC044303|Nup54|269113|nucleoporin 54	AK088855|Nup54|269113|nucleoporin 54	AK150182|Nup54|269113|nucleoporin 54	AK162037|Nup54|269113|nucleoporin 54	AK133841|Nup54|269113|nucleoporin 54	NM_183392|Nup54|269113|nucleoporin 54
mm9_v1_chrX_-_133277456_133277461	0.0215309	CDX1,2,4.p2	NM_001168227|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr7_-_30954705_30954770	0.0214754	CDX1,2,4.p2	AJ224763|Zfp146|26465|zinc finger protein 146	AK047696|Zfp146|26465|zinc finger protein 146	NM_011980|Zfp146|26465|zinc finger protein 146	AK037311|Zfp146|26465|zinc finger protein 146
mm9_v1_chr16_-_16869309_16869347	0.0214699	CDX1,2,4.p2	BC117051|Vpreb1|22362|pre-B lymphocyte gene 1	BC119175|Vpreb1|22362|pre-B lymphocyte gene 1	BC144850|Vpreb1|22362|pre-B lymphocyte gene 1	AK010843|Vpreb1|22362|pre-B lymphocyte gene 1	AK010879|Vpreb1|22362|pre-B lymphocyte gene 1	X05556|Vpreb1|22362|pre-B lymphocyte gene 1	NM_016982|Vpreb1|22362|pre-B lymphocyte gene 1
mm9_v1_chr13_-_30632975_30633024	0.0214501	CDX1,2,4.p2	AK197173|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK210928|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK191429|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK212564|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK216624|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK217705|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
mm9_v1_chr1_+_174078246_174078256	0.0213991	CDX1,2,4.p2	AK035701|Dcaf8|98193|DDB1 and CUL4 associated factor 8
mm9_v1_chr10_-_128706371_128706376	0.0213466	CDX1,2,4.p2	BC104277|Olfr777|258537|olfactory receptor 777	BC104276|Olfr777|258537|olfactory receptor 777	NM_146544|Olfr777|258537|olfactory receptor 777
mm9_v1_chr5_-_139606339_139606437	0.0208196	CDX1,2,4.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr5_-_122915995_122916040	0.0207991	CDX1,2,4.p2	AK210339|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr13_+_52678866_52678871	0.0206955	CDX1,2,4.p2	BC065121|Sykb|20963|spleen tyrosine kinase
mm9_v1_chr10_-_61441842_61441910	0.020687	CDX1,2,4.p2	NM_007731|Col13a1|12817|collagen, type XIII, alpha 1	U30292|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr8_-_74998992_74999131	0.0206792	CDX1,2,4.p2	BC032191|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AK144328|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AF536541|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AK049765|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	AK017525|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	BC020488|Cherp|27967|calcium homeostasis endoplasmic reticulum protein	NM_138585|Cherp|27967|calcium homeostasis endoplasmic reticulum protein
mm9_v1_chr4_-_87679175_87679310	0.0204504	CDX1,2,4.p2	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr15_-_54109855_54110038	0.0204439	CDX1,2,4.p2	BC049782|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AK140244|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	U94331|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AK146105|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AB013898|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	NM_008764|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm9_v1_chr1_-_172906094_172906244	0.0204135	CDX1,2,4.p2	M14276|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	U51629|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	M17515|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	M14216|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	BC011305|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	BC019758|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	BC038070|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK171316|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK170035|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK155329|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK171254|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK080885|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK089266|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	AK150613|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	NM_001077189|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb	NM_010187|Fcgr2b|14130|Fc receptor, IgG, low affinity IIb
mm9_v1_chr15_+_82005685_82005731	0.02039	CDX1,2,4.p2	AK197179|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr3_-_88100759_88100800	0.0203563	CDX1,2,4.p2	AK006195|1700021C14Rik|76927|RIKEN cDNA 1700021C14 gene	NM_029801|1700021C14Rik|76927|RIKEN cDNA 1700021C14 gene	BC107298|1700021C14Rik|76927|RIKEN cDNA 1700021C14 gene
mm9_v1_chr14_-_52640348_52640407	0.0203124	CDX1,2,4.p2	BC096486|Zfp219|69890|zinc finger protein 219	AB063578|Zfp219|69890|zinc finger protein 219	NM_027248|Zfp219|69890|zinc finger protein 219
mm9_v1_chr12_+_82047269_82047362	0.0202705	CDX1,2,4.p2	AK088358|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr12_-_85741801_85741813	0.0202247	CDX1,2,4.p2	AK079267|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK002618|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr10_-_80993364_80993465	0.0201565	CDX1,2,4.p2	AK088773|Gna11|14672|guanine nucleotide binding protein, alpha 11
mm9_v1_chr2_-_157105284_157105284	0.0199802	CDX1,2,4.p2	AK029507|4922505G16Rik|629499|RIKEN cDNA 4922505G16 gene	AK029675|4922505G16Rik|629499|RIKEN cDNA 4922505G16 gene	AK089157|4922505G16Rik|629499|RIKEN cDNA 4922505G16 gene	NM_001039557|4922505G16Rik|629499|RIKEN cDNA 4922505G16 gene
mm9_v1_chr17_+_73267643_73267665	0.0199683	CDX1,2,4.p2	AK020110|Lbh|77889|limb-bud and heart	NM_029999|Lbh|77889|limb-bud and heart	AF317517|Lbh|77889|limb-bud and heart	BC026827|Lbh|77889|limb-bud and heart	BC052470|Lbh|77889|limb-bud and heart
mm9_v1_chr7_-_51926142_51926212	0.0198427	CDX1,2,4.p2	AY363100|Myh14|71960|myosin, heavy polypeptide 14
mm9_v1_chr12_-_82695968_82696003	0.0196692	CDX1,2,4.p2	AK005232|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)	AK089101|Med6|69792|mediator of RNA polymerase II transcription, subunit 6 homolog (yeast)
mm9_v1_chr6_+_134870418_134870458	0.0196559	CDX1,2,4.p2	AK047669|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	NM_009875|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK050240|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK158411|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	BC014296|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr2_-_114000981_114001027	0.0196211	CDX1,2,4.p2	AK138700|Aqr|11834|aquarius	AK082873|Aqr|11834|aquarius
mm9_v1_chr19_+_55328356_55328506	0.0195641	CDX1,2,4.p2	AK151378|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	BC031544|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK161024|Acsl5|433256|acyl-CoA synthetase long-chain family member 5
mm9_v1_chr19_-_39537540_39537568	0.0195632	CDX1,2,4.p2	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr8_-_108462291_108462291	0.0195282	CDX1,2,4.p2	NM_013640|Psmb10|19171|proteasome (prosome, macropain) subunit, beta type 10
mm9_v1_chr18_-_77870871_77870990	0.0194506	CDX1,2,4.p2	AK009215|2310007O11Rik|74177|RIKEN cDNA 2310007O11 gene
mm9_v1_chr13_+_97158248_97158334	0.0194433	CDX1,2,4.p2	AK150656|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	NM_026173|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK012926|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC037631|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC027118|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK089013|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	AK004769|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)	BC016527|Poc5|67463|POC5 centriolar protein homolog (Chlamydomonas)
mm9_v1_chr18_-_37803782_37803859	0.01919	CDX1,2,4.p2	BC029673|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AF144562|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK075700|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK029380|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK076362|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK089054|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_175770|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr2_-_68309996_68310080	0.0190651	CDX1,2,4.p2	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr6_-_82889660_82889681	0.0190415	CDX1,2,4.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr7_+_25184715_25184739	0.018821	CDX1,2,4.p2	AK169651|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene	BC034211|1500002O20Rik|71997|RIKEN cDNA 1500002O20 gene
mm9_v1_chr1_-_153192360_153192399	0.0188052	CDX1,2,4.p2	
mm9_v1_chr13_+_5860701_5860744	0.0187269	CDX1,2,4.p2	NM_011803|Klf6|23849|Kruppel-like factor 6	AY027436|Klf6|23849|Kruppel-like factor 6
mm9_v1_chr9_-_21572496_21572571	0.0185742	CDX1,2,4.p2	AK212559|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chr19_+_29999596_29999608	0.0183021	CDX1,2,4.p2	AK020353|Il33|77125|interleukin 33	AK163464|Il33|77125|interleukin 33	NM_133775|Il33|77125|interleukin 33
mm9_v1_chr8_-_48618741_48618847	0.0182207	CDX1,2,4.p2	BC147504|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	BC151159|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK083445|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK085769|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK160812|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	NM_177240|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene
mm9_v1_chr7_-_139749889_139749896	0.018188	CDX1,2,4.p2	
mm9_v1_chr14_+_63756868_63756897	0.0181358	CDX1,2,4.p2	AK192818|Ctsb|13030|cathepsin B	AK196522|Ctsb|13030|cathepsin B
mm9_v1_chr1_-_175266945_175266952	0.0181187	CDX1,2,4.p2	AK031927|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr6_-_66846511_66846514	0.0179702	CDX1,2,4.p2	AK087755|4930597O21Rik|75373|RIKEN cDNA 4930597O21 gene
mm9_v1_chr3_-_101640128_101640145	0.0179103	CDX1,2,4.p2	NM_172295|Mab21l3|242125|mab-21-like 3 (C. elegans)
mm9_v1_chr6_+_47827641_47827690	0.0178087	CDX1,2,4.p2	AK030516|Zfp282|101095|zinc finger protein 282	AK081854|Zfp282|101095|zinc finger protein 282	BC025581|Zfp282|101095|zinc finger protein 282
mm9_v1_chr7_+_134439804_134439861	0.0177602	CDX1,2,4.p2	AK156251|Itgal|16408|integrin alpha L	AK172394|Itgal|16408|integrin alpha L	AK154115|Itgal|16408|integrin alpha L	AK169628|Itgal|16408|integrin alpha L	NM_008400|Itgal|16408|integrin alpha L
mm9_v1_chrX_-_104035877_104035981	0.0177505	CDX1,2,4.p2	AK084983|Zcchc5|213436|zinc finger, CCHC domain containing 5	BC064821|Zcchc5|213436|zinc finger, CCHC domain containing 5	NM_199468|Zcchc5|213436|zinc finger, CCHC domain containing 5
mm9_v1_chr11_-_114862859_114862945	0.0174393	CDX1,2,4.p2	BC111820|AF251705|140497|cDNA sequence AF251705	AB098476|AF251705|140497|cDNA sequence AF251705	AY457050|AF251705|140497|cDNA sequence AF251705	AB091768|AF251705|140497|cDNA sequence AF251705	AK154808|AF251705|140497|cDNA sequence AF251705	AK050008|AF251705|140497|cDNA sequence AF251705	AK079395|AF251705|140497|cDNA sequence AF251705	AB091767|AF251705|140497|cDNA sequence AF251705	BC006801|AF251705|140497|cDNA sequence AF251705
mm9_v1_chr14_+_73542347_73542351	0.0173909	CDX1,2,4.p2	AK031242|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	AK031248|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr5_-_28564412_28564412	0.0173472	CDX1,2,4.p2	AK035828|Cnpy1|269637|canopy 1 homolog (zebrafish)	NM_175651|Cnpy1|269637|canopy 1 homolog (zebrafish)
mm9_v1_chr4_+_118928045_118928205	0.0172646	CDX1,2,4.p2	AK143945|Cldn19|242653|claudin 19	NM_153105|Cldn19|242653|claudin 19	AF486651|Cldn19|242653|claudin 19	NM_001038590|Cldn19|242653|claudin 19	AK032743|Cldn19|242653|claudin 19	BC114989|Cldn19|242653|claudin 19	BC115827|Cldn19|242653|claudin 19	AF249889|Cldn19|242653|claudin 19
mm9_v1_chr3_-_108365049_108365097	0.0171884	CDX1,2,4.p2	AK155399|Tmem167b|67495|transmembrane protein 167B
mm9_v1_chr7_-_20262106_20262119	0.0171185	CDX1,2,4.p2	AK146468|Apoc2|11813|apolipoprotein C-II	Z15090|Apoc2|11813|apolipoprotein C-II
mm9_v1_chr2_-_14970818_14970938	0.0170045	CDX1,2,4.p2	AK077778|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	AK132428|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	BC053751|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	AK042750|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	NM_001165942|Nsun6|74455|NOL1/NOP2/Sun domain family member 6	NM_028950|Nsun6|74455|NOL1/NOP2/Sun domain family member 6
mm9_v1_chr18_-_56732522_56732548	0.0169817	CDX1,2,4.p2	AK004991|Aldh7a1|110695|aldehyde dehydrogenase family 7, member A1
mm9_v1_chr5_-_151992724_151992782	0.0165628	CDX1,2,4.p2	AK148227|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	AK050259|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_001163493|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	NM_146258|Stard13|243362|StAR-related lipid transfer (START) domain containing 13	BC027830|Stard13|243362|StAR-related lipid transfer (START) domain containing 13
mm9_v1_chr6_+_116288073_116288073	0.0165533	CDX1,2,4.p2	AK165647|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chrX_+_20937988_20937991	0.0165424	CDX1,2,4.p2	AK032684|Gm5124|331392|predicted pseudogene 5124	NM_198633|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr8_-_114516147_114516201	0.0165049	CDX1,2,4.p2	BC019976|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK039699|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK161044|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK035614|Adat1|30947|adenosine deaminase, tRNA-specific 1	AK082399|Adat1|30947|adenosine deaminase, tRNA-specific 1	NM_013925|Adat1|30947|adenosine deaminase, tRNA-specific 1
mm9_v1_chr3_+_97432773_97432782	0.0164836	CDX1,2,4.p2	AK133675|Fmo5|14263|flavin containing monooxygenase 5
mm9_v1_chr19_+_56536126_56536129	0.0164551	CDX1,2,4.p2	NM_001164263|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	NM_172641|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK036908|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK053921|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene
mm9_v1_chr7_+_135110992_135111067	0.0164411	CDX1,2,4.p2	NM_139149|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK132141|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK134491|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK146198|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK149118|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK145582|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK032815|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK038226|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK139960|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AK172554|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC058247|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC011078|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	BC040827|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)	AF224264|Fus|233908|fusion, derived from t(12;16) malignant liposarcoma (human)
mm9_v1_chr15_+_99239082_99239188	0.016271	CDX1,2,4.p2	AK039762|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK003483|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr11_-_70501430_70501474	0.0162525	CDX1,2,4.p2	AK039670|Camta2|216874|calmodulin binding transcription activator 2	BC049133|Camta2|216874|calmodulin binding transcription activator 2	BC056395|Camta2|216874|calmodulin binding transcription activator 2	AK169118|Camta2|216874|calmodulin binding transcription activator 2	AK150186|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr10_+_79579271_79579362	0.0162466	CDX1,2,4.p2	BC052379|Stk11|20869|serine/threonine kinase 11	NM_011492|Stk11|20869|serine/threonine kinase 11	AB015801|Stk11|20869|serine/threonine kinase 11	AF145287|Stk11|20869|serine/threonine kinase 11	AF151711|Stk11|20869|serine/threonine kinase 11	EU730638|Stk11|20869|serine/threonine kinase 11
mm9_v1_chr18_-_46901117_46901234	0.0162295	CDX1,2,4.p2	BC070470|Atg12|67526|autophagy-related 12 (yeast)	AB066216|Atg12|67526|autophagy-related 12 (yeast)	AK167027|Atg12|67526|autophagy-related 12 (yeast)	AK008698|Atg12|67526|autophagy-related 12 (yeast)	AK016474|Atg12|67526|autophagy-related 12 (yeast)	AK039278|Atg12|67526|autophagy-related 12 (yeast)	AK039546|Atg12|67526|autophagy-related 12 (yeast)	AK005405|Atg12|67526|autophagy-related 12 (yeast)	NM_026217|Atg12|67526|autophagy-related 12 (yeast)
mm9_v1_chr5_+_130231000_130231002	0.0161037	CDX1,2,4.p2	BC055893|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr11_+_75300330_75300364	0.0160531	CDX1,2,4.p2	BC093481|Prpf8|192159|pre-mRNA processing factor 8	AK144232|Prpf8|192159|pre-mRNA processing factor 8
mm9_v1_chr2_+_157386313_157386316	0.0159821	CDX1,2,4.p2	AK046462|Nnat|18111|neuronatin
mm9_v1_chr14_+_63752151_63752250	0.0159812	CDX1,2,4.p2	M14222|Ctsb|13030|cathepsin B	AK190209|Ctsb|13030|cathepsin B	AK190539|Ctsb|13030|cathepsin B	AK191055|Ctsb|13030|cathepsin B	AK191391|Ctsb|13030|cathepsin B	AK196955|Ctsb|13030|cathepsin B	AK198213|Ctsb|13030|cathepsin B	AK199268|Ctsb|13030|cathepsin B	AK201893|Ctsb|13030|cathepsin B	AK202291|Ctsb|13030|cathepsin B	AK203639|Ctsb|13030|cathepsin B
mm9_v1_chr17_+_66472859_66472952	0.0158946	CDX1,2,4.p2	BC079656|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	NM_001003919|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK076357|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK049419|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)	AK152868|Ddx11|320209|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae)
mm9_v1_chr1_+_45390415_45390462	0.0158155	CDX1,2,4.p2	BC039923|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr17_+_66460934_66461036	0.0158094	CDX1,2,4.p2	AK159820|ORF19|68767|open reading frame 19	AK171737|ORF19|68767|open reading frame 19	AK172673|ORF19|68767|open reading frame 19	AJ304796|ORF19|68767|open reading frame 19	AK149967|ORF19|68767|open reading frame 19	BC025839|ORF19|68767|open reading frame 19	NM_001037757|ORF19|68767|open reading frame 19	AK154400|ORF19|68767|open reading frame 19	AK033616|ORF19|68767|open reading frame 19
mm9_v1_chr2_-_131178551_131178627	0.0154943	CDX1,2,4.p2	BC096529|Rnf24|51902|ring finger protein 24	AK154093|Rnf24|51902|ring finger protein 24	AK048813|Rnf24|51902|ring finger protein 24	AK015699|Rnf24|51902|ring finger protein 24	AK089207|Rnf24|51902|ring finger protein 24	AK083665|Rnf24|51902|ring finger protein 24	NM_178607|Rnf24|51902|ring finger protein 24
mm9_v1_chr3_+_105673775_105673824	0.0154463	CDX1,2,4.p2	BC100416|Adora3|11542|adenosine A3 receptor	NM_001174169|Adora3|11542|adenosine A3 receptor	AK016304|Adora3|11542|adenosine A3 receptor	AK005581|Adora3|11542|adenosine A3 receptor	NM_027025|Adora3|11542|adenosine A3 receptor
mm9_v1_chr19_+_55328128_55328228	0.0153962	CDX1,2,4.p2	AK150542|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK150663|Acsl5|433256|acyl-CoA synthetase long-chain family member 5	AK145894|Acsl5|433256|acyl-CoA synthetase long-chain family member 5
mm9_v1_chr10_+_80719921_80719943	0.0153639	CDX1,2,4.p2	L33340|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr16_-_76288569_76288581	0.0153331	CDX1,2,4.p2	BC062260|Nrip1|268903|nuclear receptor interacting protein 1
mm9_v1_chr4_+_116230293_116230350	0.0152042	CDX1,2,4.p2	AK037224|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK133761|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK019942|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	BC066034|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	NM_029868|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr14_+_49686169_49686492	0.0150457	CDX1,2,4.p2	BC023094|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	NM_144535|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK028927|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK041400|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK154166|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK016540|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK051372|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK036465|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK030928|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK036454|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK042544|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK170232|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK164148|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing	AK211895|Mudeng|74385|MU-2/AP1M2 domain containing, death-inducing
mm9_v1_chr11_-_83391984_83392037	0.0150451	CDX1,2,4.p2	AF128195|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128196|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128197|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128198|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128199|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128200|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128201|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128202|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128203|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128204|Ccl9|20308|chemokine (C-C motif) ligand 9	BC139318|Ccl9|20308|chemokine (C-C motif) ligand 9	BC145962|Ccl9|20308|chemokine (C-C motif) ligand 9	U49513|Ccl9|20308|chemokine (C-C motif) ligand 9	AK151131|Ccl9|20308|chemokine (C-C motif) ligand 9	AK155036|Ccl9|20308|chemokine (C-C motif) ligand 9	AK154511|Ccl9|20308|chemokine (C-C motif) ligand 9	AK154657|Ccl9|20308|chemokine (C-C motif) ligand 9	AK155032|Ccl9|20308|chemokine (C-C motif) ligand 9	AK151649|Ccl9|20308|chemokine (C-C motif) ligand 9
mm9_v1_chr7_+_18830695_18830771	0.0149785	CDX1,2,4.p2	AK029010|Mill1|266815|MHC I like leukocyte 1	NM_153749|Mill1|266815|MHC I like leukocyte 1	BC110547|Mill1|266815|MHC I like leukocyte 1	BC110548|Mill1|266815|MHC I like leukocyte 1	AK030695|Mill1|266815|MHC I like leukocyte 1
mm9_v1_chr14_+_119379988_119380035	0.0149642	CDX1,2,4.p2	AK200390|Dnajc3|100037258|DnaJ (Hsp40) homolog, subfamily C, member 3
mm9_v1_chr1_+_45401303_45401332	0.0148843	CDX1,2,4.p2	AK159868|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr9_+_78296020_78296030	0.0148574	CDX1,2,4.p2	AF369902|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)	BC063256|Mto1|68291|mitochondrial translation optimization 1 homolog (S. cerevisiae)
mm9_v1_chr18_+_37890662_37890807	0.0147761	CDX1,2,4.p2	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr2_+_136357921_136358056	0.0147566	CDX1,2,4.p2	AK029804|Ankrd5|319196|ankyrin repeat domain 5	BC089504|Ankrd5|319196|ankyrin repeat domain 5	BC120825|Ankrd5|319196|ankyrin repeat domain 5	BC144833|Ankrd5|319196|ankyrin repeat domain 5	NM_175667|Ankrd5|319196|ankyrin repeat domain 5
mm9_v1_chr2_+_26775279_26775409	0.0144008	CDX1,2,4.p2	AK215042|Surf2|20931|surfeit gene 2
mm9_v1_chr3_+_90407688_90407708	0.014384	CDX1,2,4.p2	AK160522|S100a4|20198|S100 calcium binding protein A4	D00208|S100a4|20198|S100 calcium binding protein A4	NM_011311|S100a4|20198|S100 calcium binding protein A4	AK003065|S100a4|20198|S100 calcium binding protein A4
mm9_v1_chr4_+_154927385_154927543	0.0143569	CDX1,2,4.p2	BC003294|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr1_-_97564064_97564129	0.0140973	CDX1,2,4.p2	AK041723|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AK003690|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr11_-_55233581_55233646	0.014073	CDX1,2,4.p2	NM_009242|Sparc|20692|secreted acidic cysteine rich glycoprotein
mm9_v1_chr6_-_71561919_71561988	0.014016	CDX1,2,4.p2	AK049243|Kdm3a|104263|lysine (K)-specific demethylase 3A
mm9_v1_chr8_+_108703203_108703313	0.0139779	CDX1,2,4.p2	
mm9_v1_chr8_-_72433344_72433376	0.0139561	CDX1,2,4.p2	AK004386|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr1_+_58852217_58852287	0.0139226	CDX1,2,4.p2	AK146758|Casp8|12370|caspase 8	AK168812|Casp8|12370|caspase 8	NM_009812|Casp8|12370|caspase 8	BC006737|Casp8|12370|caspase 8
mm9_v1_chr17_+_36974140_36974211	0.0138182	CDX1,2,4.p2	AK148247|Trim26|22670|tripartite motif-containing 26
mm9_v1_chr10_-_93002725_93002777	0.0138137	CDX1,2,4.p2	AK005066|Amdhd1|71761|amidohydrolase domain containing 1	BC121826|Amdhd1|71761|amidohydrolase domain containing 1	BC118616|Amdhd1|71761|amidohydrolase domain containing 1	AK090143|Amdhd1|71761|amidohydrolase domain containing 1	NM_027908|Amdhd1|71761|amidohydrolase domain containing 1
mm9_v1_chr16_-_44016471_44016548	0.013808	CDX1,2,4.p2	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr4_-_19447698_19447753	0.0137186	CDX1,2,4.p2	BC053980|Cpne3|70568|copine III
mm9_v1_chr5_-_145927883_145927892	0.0136793	CDX1,2,4.p2	AK088764|Ptcd1|71799|pentatricopeptide repeat domain 1	BC004766|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr14_+_78304045_78304240	0.0136058	CDX1,2,4.p2	AK136055|Epsti1|108670|epithelial stromal interaction 1 (breast)	NM_029495|Epsti1|108670|epithelial stromal interaction 1 (breast)	NM_178825|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK135710|Epsti1|108670|epithelial stromal interaction 1 (breast)	AY239224|Epsti1|108670|epithelial stromal interaction 1 (breast)	BC021821|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK077376|Epsti1|108670|epithelial stromal interaction 1 (breast)	BC020120|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK017174|Epsti1|108670|epithelial stromal interaction 1 (breast)	AY239223|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK030289|Epsti1|108670|epithelial stromal interaction 1 (breast)	AK077223|Epsti1|108670|epithelial stromal interaction 1 (breast)
mm9_v1_chr19_-_4012654_4012674	0.0135597	CDX1,2,4.p2	BC041682|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK151455|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm9_v1_chr16_-_4624877_4625001	0.013481	CDX1,2,4.p2	AB073618|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	BC024346|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	BC096419|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AF349454|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AK003227|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	AK008380|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	NM_025571|Pam16|66449|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
mm9_v1_chr1_+_182837982_182838044	0.0134773	CDX1,2,4.p2	AK187139|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2
mm9_v1_chr9_-_44550762_44550970	0.0134527	CDX1,2,4.p2	AK182325|Arcn1|213827|archain 1	BC008236|Arcn1|213827|archain 1
mm9_v1_chr1_-_4775745_4775806	0.0134386	CDX1,2,4.p2	AK019249|Mrpl15|27395|mitochondrial ribosomal protein L15	AK019244|Mrpl15|27395|mitochondrial ribosomal protein L15	AK160660|Mrpl15|27395|mitochondrial ribosomal protein L15	AK010474|Mrpl15|27395|mitochondrial ribosomal protein L15	AK017824|Mrpl15|27395|mitochondrial ribosomal protein L15	AK011775|Mrpl15|27395|mitochondrial ribosomal protein L15	AK019175|Mrpl15|27395|mitochondrial ribosomal protein L15	AK003026|Mrpl15|27395|mitochondrial ribosomal protein L15	AK017804|Mrpl15|27395|mitochondrial ribosomal protein L15	AK017820|Mrpl15|27395|mitochondrial ribosomal protein L15	AK003367|Mrpl15|27395|mitochondrial ribosomal protein L15	BC068230|Mrpl15|27395|mitochondrial ribosomal protein L15	BC021304|Mrpl15|27395|mitochondrial ribosomal protein L15	BC027233|Mrpl15|27395|mitochondrial ribosomal protein L15	AK010604|Mrpl15|27395|mitochondrial ribosomal protein L15	AK150880|Mrpl15|27395|mitochondrial ribosomal protein L15	NM_001177658|Mrpl15|27395|mitochondrial ribosomal protein L15	NM_025300|Mrpl15|27395|mitochondrial ribosomal protein L15
mm9_v1_chr1_+_134373950_134374067	0.0134175	CDX1,2,4.p2	AK049247|Rbbp5|213464|retinoblastoma binding protein 5	BC057632|Rbbp5|213464|retinoblastoma binding protein 5	AK179022|Rbbp5|213464|retinoblastoma binding protein 5	AK195903|Rbbp5|213464|retinoblastoma binding protein 5
mm9_v1_chr9_-_48288689_48288691	0.0133392	CDX1,2,4.p2	AK172641|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr16_+_57152994_57153228	0.0133077	CDX1,2,4.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr1_+_159436875_159436945	0.0133044	CDX1,2,4.p2	NM_033354|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	BC059194|Sec16b|89867|SEC16 homolog B (S. cerevisiae)	AK173302|Sec16b|89867|SEC16 homolog B (S. cerevisiae)
mm9_v1_chr4_-_96330818_96330832	0.0131711	CDX1,2,4.p2	AK165404|Cyp2j5|13109|cytochrome P450, family 2, subfamily j, polypeptide 5
mm9_v1_chr6_+_108765009_108765022	0.0131284	CDX1,2,4.p2	AK201340|Arl8b|67166|ADP-ribosylation factor-like 8B	AK206384|Arl8b|67166|ADP-ribosylation factor-like 8B	AK219184|Arl8b|67166|ADP-ribosylation factor-like 8B	AK219830|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr16_-_17911283_17911450	0.013066	CDX1,2,4.p2	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr5_-_123439064_123439107	0.0129252	CDX1,2,4.p2	BC065090|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK043352|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_001003953|Kdm2b|30841|lysine (K)-specific demethylase 2B	AK136625|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr17_-_74242984_74243003	0.0128843	CDX1,2,4.p2	BC003997|Xdh|22436|xanthine dehydrogenase
mm9_v1_chr5_-_100927591_100927596	0.0128455	CDX1,2,4.p2	AK030894|Lin54|231506|lin-54 homolog (C. elegans)	NM_001115010|Lin54|231506|lin-54 homolog (C. elegans)	AK028016|Lin54|231506|lin-54 homolog (C. elegans)
mm9_v1_chr7_+_27220131_27220231	0.012806	CDX1,2,4.p2	AK087843|Nlrp4a|243880|NLR family, pyrin domain containing 4A	AY355341|Nlrp4a|243880|NLR family, pyrin domain containing 4A	NM_172896|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141342|Nlrp4a|243880|NLR family, pyrin domain containing 4A	BC141343|Nlrp4a|243880|NLR family, pyrin domain containing 4A
mm9_v1_chr6_+_30688050_30688066	0.0127819	CDX1,2,4.p2	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr13_+_41096358_41096399	0.0127694	CDX1,2,4.p2	NM_026550|Pak1ip1|68083|PAK1 interacting protein 1	AK077846|Pak1ip1|68083|PAK1 interacting protein 1	AF386076|Pak1ip1|68083|PAK1 interacting protein 1	AK017959|Pak1ip1|68083|PAK1 interacting protein 1
mm9_v1_chr1_-_4350323_4350394	0.0126265	CDX1,2,4.p2	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr8_-_8690334_8690515	0.0124081	CDX1,2,4.p2	AK145733|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr7_+_148127289_148127427	0.0124042	CDX1,2,4.p2	AK171694|Athl1|212974|ATH1, acid trehalase-like 1 (yeast)
mm9_v1_chr17_-_6317399_6317473	0.012347	CDX1,2,4.p2	EF110999|Dynlt1c|100040563|dynein light chain Tctex-type 1C	AK030569|Dynlt1a|100310872|dynein light chain Tctex-type 1A	BC087868|Dynlt1a|100310872|dynein light chain Tctex-type 1A	NM_001166629|Dynlt1a|100310872|dynein light chain Tctex-type 1A
mm9_v1_chr8_-_18741546_18741552	0.0121191	CDX1,2,4.p2	AK143974|Angpt2|11601|angiopoietin 2	AK019860|Angpt2|11601|angiopoietin 2	NM_007426|Angpt2|11601|angiopoietin 2
mm9_v1_chr3_+_89263237_89263263	0.0121189	CDX1,2,4.p2	AK003607|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chr2_-_180701822_180701878	0.0121174	CDX1,2,4.p2	
mm9_v1_chr5_+_101227737_101227799	0.0120281	CDX1,2,4.p2	AK145935|Mrps18c|68735|mitochondrial ribosomal protein S18C	AK004139|Mrps18c|68735|mitochondrial ribosomal protein S18C	AK088290|Mrps18c|68735|mitochondrial ribosomal protein S18C	BC028442|Mrps18c|68735|mitochondrial ribosomal protein S18C	NM_026826|Mrps18c|68735|mitochondrial ribosomal protein S18C
mm9_v1_chr1_+_34356614_34356645	0.0119025	CDX1,2,4.p2	BC048929|Dst|13518|dystonin
mm9_v1_chr13_+_9275741_9275783	0.0118009	CDX1,2,4.p2	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr1_-_53353810_53353878	0.0117956	CDX1,2,4.p2	AK045010|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	BC028939|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	NM_153556|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)	AK140689|Pms1|227099|postmeiotic segregation increased 1 (S. cerevisiae)
mm9_v1_chr17_+_33102747_33102840	0.0117795	CDX1,2,4.p2	NM_153063|Zfp472|224691|zinc finger protein 472	AK142395|Zfp472|224691|zinc finger protein 472	BC027407|Zfp472|224691|zinc finger protein 472	AY195875|Zfp472|224691|zinc finger protein 472	BC023090|Zfp472|224691|zinc finger protein 472
mm9_v1_chr9_+_114624257_114624316	0.0117704	CDX1,2,4.p2	AK205150|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1	AK217382|Dync1li1|235661|dynein cytoplasmic 1 light intermediate chain 1
mm9_v1_chr8_+_47637408_47637440	0.011634	CDX1,2,4.p2	BC094675|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AK006479|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AK050386|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	BC117784|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	BC117785|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	NM_027973|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AK081703|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein	AY366362|Mlf1ip|71876|myeloid leukemia factor 1 interacting protein
mm9_v1_chr11_+_117623703_117623821	0.0116224	CDX1,2,4.p2	AK137381|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr14_+_58691522_58691522	0.0115241	CDX1,2,4.p2	AK158782|Fgf9|14180|fibroblast growth factor 9	NM_013518|Fgf9|14180|fibroblast growth factor 9
mm9_v1_chr2_-_90389238_90389244	0.0113454	CDX1,2,4.p2	AK020679|9630014C11Rik|78570|RIKEN cDNA 9630014C11 gene
mm9_v1_chr6_+_135015679_135015703	0.0113396	CDX1,2,4.p2	NM_181444|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A	BC039217|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A
mm9_v1_chr2_-_87475901_87475901	0.0113373	CDX1,2,4.p2	NM_146836|Olfr1132|258833|olfactory receptor 1132
mm9_v1_chr7_-_139758954_139758967	0.0113355	CDX1,2,4.p2	AK187824|Oat|18242|ornithine aminotransferase
mm9_v1_chr8_-_106966697_106966807	0.011329	CDX1,2,4.p2	AK152157|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK140743|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK147899|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161434|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161494|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr4_-_58925575_58925638	0.0113267	CDX1,2,4.p2	AK087690|AI314180|230249|expressed sequence AI314180	BC058684|AI314180|230249|expressed sequence AI314180	NM_172381|AI314180|230249|expressed sequence AI314180	AK041579|AI314180|230249|expressed sequence AI314180
mm9_v1_chr7_+_114179649_114179650	0.011219	CDX1,2,4.p2	NM_147034|Olfr713|259036|olfactory receptor 713	BC100704|Olfr713|259036|olfactory receptor 713
mm9_v1_chr3_-_105735506_105735581	0.0112114	CDX1,2,4.p2	BC147821|I830077J02Rik|433638|RIKEN cDNA I830077J02 gene	BC147828|I830077J02Rik|433638|RIKEN cDNA I830077J02 gene	AK152510|I830077J02Rik|433638|RIKEN cDNA I830077J02 gene	NM_001033780|I830077J02Rik|433638|RIKEN cDNA I830077J02 gene
mm9_v1_chr10_-_77460176_77460322	0.0112001	CDX1,2,4.p2	AK030892|Pfkl|18641|phosphofructokinase, liver, B-type
mm9_v1_chr17_+_24544500_24544654	0.0110801	CDX1,2,4.p2	BC049911|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	BC056614|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chr1_+_180336011_180336163	0.0110464	CDX1,2,4.p2	BC025062|Efcab2|68226|EF-hand calcium binding domain 2	NM_026626|Efcab2|68226|EF-hand calcium binding domain 2	AK018894|Efcab2|68226|EF-hand calcium binding domain 2	AK010880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr9_+_54758322_54758381	0.011014	CDX1,2,4.p2	AK038058|Ireb2|64602|iron responsive element binding protein 2
mm9_v1_chr15_+_90054711_90054794	0.0108615	CDX1,2,4.p2	AK143038|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK166344|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK147821|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	NM_001033441|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK170450|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK153580|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK171179|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)
mm9_v1_chr2_+_74707394_74707441	0.0108609	CDX1,2,4.p2	AK207939|Mtx2|53375|metaxin 2	AK212612|Mtx2|53375|metaxin 2	AK216047|Mtx2|53375|metaxin 2
mm9_v1_chr7_-_129125061_129125233	0.0107771	CDX1,2,4.p2	AK191299|Cog7|233824|component of oligomeric golgi complex 7	AK030709|Cog7|233824|component of oligomeric golgi complex 7	AK145163|Cog7|233824|component of oligomeric golgi complex 7	AK154693|Cog7|233824|component of oligomeric golgi complex 7	NM_001033318|Cog7|233824|component of oligomeric golgi complex 7	AK172200|Cog7|233824|component of oligomeric golgi complex 7	AK163143|Cog7|233824|component of oligomeric golgi complex 7
mm9_v1_chr2_+_91366928_91366961	0.0107006	CDX1,2,4.p2	AK015282|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr17_+_13414053_13414053	0.0106215	CDX1,2,4.p2	AJ245453|Smok2a|27263|sperm motility kinase 2A	NM_013741|Smok2a|27263|sperm motility kinase 2A
mm9_v1_chr17_-_26081875_26081875	0.0105395	CDX1,2,4.p2	AK143822|Nhlrc4|621239|NHL repeat containing 4	NM_001039038|Nhlrc4|621239|NHL repeat containing 4
mm9_v1_chr5_-_42235532_42235553	0.0104641	CDX1,2,4.p2	AK079548|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK077824|Bod1l|665775|biorientation of chromosomes in cell division 1-like	NM_001081422|Bod1l|665775|biorientation of chromosomes in cell division 1-like
mm9_v1_chr19_-_27463677_27463827	0.0103438	CDX1,2,4.p2	AK004416|D19Bwg1357e|52874|DNA segment, Chr 19, Brigham & Women's Genetics 1357 expressed
mm9_v1_chr10_-_8665041_8665100	0.0103363	CDX1,2,4.p2	
mm9_v1_chr14_-_11994524_11994548	0.0102845	CDX1,2,4.p2	AF055573|Fhit|14198|fragile histidine triad gene	NM_010210|Fhit|14198|fragile histidine triad gene	AF047699|Fhit|14198|fragile histidine triad gene
mm9_v1_chr9_-_103104394_103104479	0.0101544	CDX1,2,4.p2	AK030437|Srprb|20818|signal recognition particle receptor, B subunit	NM_009275|Srprb|20818|signal recognition particle receptor, B subunit	AK075583|Srprb|20818|signal recognition particle receptor, B subunit	AK007859|Srprb|20818|signal recognition particle receptor, B subunit	AK167039|Srprb|20818|signal recognition particle receptor, B subunit	U17343|Srprb|20818|signal recognition particle receptor, B subunit	BC003798|Srprb|20818|signal recognition particle receptor, B subunit	AK004854|Srprb|20818|signal recognition particle receptor, B subunit	AK008383|Srprb|20818|signal recognition particle receptor, B subunit	AK015469|Srprb|20818|signal recognition particle receptor, B subunit	AK160600|Srprb|20818|signal recognition particle receptor, B subunit
mm9_v1_chr8_+_35224310_35224396	0.0101092	CDX1,2,4.p2	AK185123|Tmem66|67887|transmembrane protein 66	AK180893|Tmem66|67887|transmembrane protein 66	AK197284|Tmem66|67887|transmembrane protein 66	AK207744|Tmem66|67887|transmembrane protein 66	AK213493|Tmem66|67887|transmembrane protein 66	AK211246|Tmem66|67887|transmembrane protein 66
mm9_v1_chr4_+_155205723_155205804	0.0100219	CDX1,2,4.p2	AK003442|Aurkaip1|66077|aurora kinase A interacting protein 1	NM_025338|Aurkaip1|66077|aurora kinase A interacting protein 1	AK002737|Aurkaip1|66077|aurora kinase A interacting protein 1	AK158165|Aurkaip1|66077|aurora kinase A interacting protein 1	AK033452|Aurkaip1|66077|aurora kinase A interacting protein 1	AK166049|Aurkaip1|66077|aurora kinase A interacting protein 1	BC011245|Aurkaip1|66077|aurora kinase A interacting protein 1	AK144719|Aurkaip1|66077|aurora kinase A interacting protein 1
mm9_v1_chr19_+_54003803_54003809	0.00998759	CDX1,2,4.p2	AK050175|Pdcd4|18569|programmed cell death 4
mm9_v1_chr3_+_94736993_94737043	0.00998421	CDX1,2,4.p2	BC011202|Selenbp1|20341|selenium binding protein 1	NM_009150|Selenbp1|20341|selenium binding protein 1
mm9_v1_chr7_+_9080031_9080031	0.00996206	CDX1,2,4.p2	NM_001105070|Vmn2r38|434110|vomeronasal 2, receptor 38
mm9_v1_chr5_+_93238413_93238466	0.00992243	CDX1,2,4.p2	NM_001077595|Shroom3|27428|shroom family member 3	AK164918|Shroom3|27428|shroom family member 3	AF199422|Shroom3|27428|shroom family member 3
mm9_v1_chr19_+_13009228_13009229	0.00984048	CDX1,2,4.p2	BC133705|Olfr1449|258300|olfactory receptor 1449	NM_146303|Olfr1449|258300|olfactory receptor 1449
mm9_v1_chrX_-_71638317_71638612	0.00981477	CDX1,2,4.p2	BC011237|Fam3a|66294|family with sequence similarity 3, member A	AK007715|Fam3a|66294|family with sequence similarity 3, member A	NM_025473|Fam3a|66294|family with sequence similarity 3, member A	BC019752|Fam3a|66294|family with sequence similarity 3, member A	BC069871|Fam3a|66294|family with sequence similarity 3, member A
mm9_v1_chr18_-_15309939_15309954	0.00978808	CDX1,2,4.p2	AY899808|Kctd1|106931|potassium channel tetramerisation domain containing 1	NM_134112|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr18_+_74427821_74428008	0.00978611	CDX1,2,4.p2	BC069837|Mbd1|17190|methyl-CpG binding domain protein 1	AK156401|Mbd1|17190|methyl-CpG binding domain protein 1	AK004624|Mbd1|17190|methyl-CpG binding domain protein 1	NM_013594|Mbd1|17190|methyl-CpG binding domain protein 1	AK162858|Mbd1|17190|methyl-CpG binding domain protein 1	AF072240|Mbd1|17190|methyl-CpG binding domain protein 1
mm9_v1_chr4_-_96330805_96330814	0.00975563	CDX1,2,4.p2	AK143932|Cyp2j5|13109|cytochrome P450, family 2, subfamily j, polypeptide 5	NM_010007|Cyp2j5|13109|cytochrome P450, family 2, subfamily j, polypeptide 5
mm9_v1_chr7_-_148040227_148040484	0.00953911	CDX1,2,4.p2	BC052402|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	AK003184|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr8_-_25686797_25686823	0.00949189	CDX1,2,4.p2	BC026393|Ido2|209176|indoleamine 2,3-dioxygenase 2	EF137182|Ido2|209176|indoleamine 2,3-dioxygenase 2	NM_145949|Ido2|209176|indoleamine 2,3-dioxygenase 2
mm9_v1_chr2_+_97306600_97306623	0.00935282	CDX1,2,4.p2	
mm9_v1_chr6_+_49023793_49023864	0.00929291	CDX1,2,4.p2	NM_029353|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene	AK031878|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene	AK153503|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene	AK010366|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene
mm9_v1_chr10_-_88193845_88193845	0.00929044	CDX1,2,4.p2	NM_001037166|Gm4925|237433|predicted gene 4925
mm9_v1_chr4_-_126738303_126738384	0.00927164	CDX1,2,4.p2	BC064774|Zmym1|68310|zinc finger, MYM domain containing 1	AK138687|Zmym1|68310|zinc finger, MYM domain containing 1	AK166769|Zmym1|68310|zinc finger, MYM domain containing 1	AK049568|Zmym1|68310|zinc finger, MYM domain containing 1	AK035618|Zmym1|68310|zinc finger, MYM domain containing 1	NM_026670|Zmym1|68310|zinc finger, MYM domain containing 1	AK167508|Zmym1|68310|zinc finger, MYM domain containing 1	AK016783|Zmym1|68310|zinc finger, MYM domain containing 1	AK044538|Zmym1|68310|zinc finger, MYM domain containing 1
mm9_v1_chr14_+_21513864_21513981	0.00914929	CDX1,2,4.p2	
mm9_v1_chr1_-_191167231_191167231	0.00912269	CDX1,2,4.p2	NM_001159850|Kcnk2|16526|potassium channel, subfamily K, member 2
mm9_v1_chr7_-_52309439_52309541	0.0091104	CDX1,2,4.p2	AK011086|Prrg2|65116|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm9_v1_chr4_-_128639595_128639690	0.00905995	CDX1,2,4.p2	BC138973|Adc|242669|arginine decarboxylase	BC138974|Adc|242669|arginine decarboxylase	NM_172875|Adc|242669|arginine decarboxylase	BC065772|Adc|242669|arginine decarboxylase	BC028775|Adc|242669|arginine decarboxylase	AK047522|Adc|242669|arginine decarboxylase	AK077201|Adc|242669|arginine decarboxylase	AK080568|Adc|242669|arginine decarboxylase	AK154564|Adc|242669|arginine decarboxylase	AK148717|Adc|242669|arginine decarboxylase
mm9_v1_chr14_-_51405130_51405204	0.00904289	CDX1,2,4.p2	BC003272|Ttc5|219022|tetratricopeptide repeat domain 5	BC025610|Ttc5|219022|tetratricopeptide repeat domain 5	AK077874|Ttc5|219022|tetratricopeptide repeat domain 5	BC092074|Ttc5|219022|tetratricopeptide repeat domain 5	AK081214|Ttc5|219022|tetratricopeptide repeat domain 5	AK161279|Ttc5|219022|tetratricopeptide repeat domain 5	AK157777|Ttc5|219022|tetratricopeptide repeat domain 5	AK133953|Ttc5|219022|tetratricopeptide repeat domain 5	BC069946|Ttc5|219022|tetratricopeptide repeat domain 5	AK044781|Ttc5|219022|tetratricopeptide repeat domain 5	NM_001080949|Ttc5|219022|tetratricopeptide repeat domain 5	NM_177625|Ttc5|219022|tetratricopeptide repeat domain 5
mm9_v1_chr3_-_144347983_144348061	0.00888392	CDX1,2,4.p2	
mm9_v1_chr4_-_150283917_150284029	0.00888241	CDX1,2,4.p2	BC002187|Park7|57320|Parkinson disease (autosomal recessive, early onset) 7	AK146368|Park7|57320|Parkinson disease (autosomal recessive, early onset) 7	AB015652|Park7|57320|Parkinson disease (autosomal recessive, early onset) 7	AK168341|Park7|57320|Parkinson disease (autosomal recessive, early onset) 7	AK153948|Park7|57320|Parkinson disease (autosomal recessive, early onset) 7	NM_020569|Park7|57320|Parkinson disease (autosomal recessive, early onset) 7
mm9_v1_chr3_-_156224638_156224816	0.00884952	CDX1,2,4.p2	AK083124|4930570G19Rik|329782|RIKEN cDNA 4930570G19 gene	AK016265|4930570G19Rik|329782|RIKEN cDNA 4930570G19 gene	BC048612|4930570G19Rik|329782|RIKEN cDNA 4930570G19 gene
mm9_v1_chr5_+_120120870_120121055	0.0086973	CDX1,2,4.p2	BC096551|Tbx3|21386|T-box 3	AK052453|Tbx3|21386|T-box 3
mm9_v1_chr5_+_91456489_91456542	0.00861396	CDX1,2,4.p2	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chr16_+_10835151_10835160	0.0086056	CDX1,2,4.p2	AK143588|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene	NM_001162932|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene	AK080331|A630055G03Rik|223970|RIKEN cDNA A630055G03 gene
mm9_v1_chr9_+_99476204_99476272	0.00844326	CDX1,2,4.p2	AK050090|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	NM_031403|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	BC006661|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	AK139631|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)	AK090351|Dbr1|83703|debranching enzyme homolog 1 (S. cerevisiae)
mm9_v1_chr9_-_61918412_61918412	0.00841116	CDX1,2,4.p2	BC094587|Glce|93683|glucuronyl C5-epimerase	NM_033320|Glce|93683|glucuronyl C5-epimerase
mm9_v1_chr2_-_136716832_136716934	0.0083822	CDX1,2,4.p2	AK008160|Mkks|59030|McKusick-Kaufman syndrome protein	AK008406|Mkks|59030|McKusick-Kaufman syndrome protein	BC024359|Mkks|59030|McKusick-Kaufman syndrome protein	AK004987|Mkks|59030|McKusick-Kaufman syndrome protein	BC100336|Mkks|59030|McKusick-Kaufman syndrome protein	AK032528|Mkks|59030|McKusick-Kaufman syndrome protein	AK032554|Mkks|59030|McKusick-Kaufman syndrome protein	AF254074|Mkks|59030|McKusick-Kaufman syndrome protein
mm9_v1_chr14_+_56178853_56178921	0.00837741	CDX1,2,4.p2	NM_133734|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK033540|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK170657|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK158784|Dcaf11|28199|DDB1 and CUL4 associated factor 11
mm9_v1_chr7_+_134376800_134376956	0.00825447	CDX1,2,4.p2	AK148378|Zfp553|233887|zinc finger protein 553	BC026401|Zfp553|233887|zinc finger protein 553	NM_146201|Zfp553|233887|zinc finger protein 553
mm9_v1_chr12_+_77866520_77866582	0.00823238	CDX1,2,4.p2	AK085076|Churc1|211151|churchill domain containing 1	BC076499|Churc1|211151|churchill domain containing 1	NM_206534|Churc1|211151|churchill domain containing 1	BC019472|Churc1|211151|churchill domain containing 1
mm9_v1_chr4_-_49857641_49857765	0.00819549	CDX1,2,4.p2	AK173314|Grin3a|242443|glutamate receptor ionotropic, NMDA3A
mm9_v1_chr5_+_104864168_104864178	0.00811016	CDX1,2,4.p2	AK151069|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr1_+_95405907_95405920	0.0079947	CDX1,2,4.p2	
mm9_v1_chr4_+_154843223_154843242	0.00799295	CDX1,2,4.p2	BC144992|Tmem52|69671|transmembrane protein 52	NM_027161|Tmem52|69671|transmembrane protein 52	BC150685|Tmem52|69671|transmembrane protein 52	AK009779|Tmem52|69671|transmembrane protein 52
mm9_v1_chr12_+_119082333_119082371	0.0078254	CDX1,2,4.p2	BC006933|Cdca7l|217946|cell division cycle associated 7 like	NM_146040|Cdca7l|217946|cell division cycle associated 7 like	AK149673|Cdca7l|217946|cell division cycle associated 7 like	BC071198|Cdca7l|217946|cell division cycle associated 7 like
mm9_v1_chr14_-_66696533_66696571	0.00781721	CDX1,2,4.p2	AK161261|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK161266|Adam2|11495|a disintegrin and metallopeptidase domain 2	U16242|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK016550|Adam2|11495|a disintegrin and metallopeptidase domain 2	NM_009618|Adam2|11495|a disintegrin and metallopeptidase domain 2	U38806|Adam2|11495|a disintegrin and metallopeptidase domain 2
mm9_v1_chr3_-_38349112_38349206	0.0077148	CDX1,2,4.p2	BC051515|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr2_+_37056762_37056762	0.00771466	CDX1,2,4.p2	NM_146662|Olfr365|258656|olfactory receptor 365
mm9_v1_chr4_+_95246111_95246193	0.00769955	CDX1,2,4.p2	NM_029347|Fggy|75578|FGGY carbohydrate kinase domain containing	AK085534|Fggy|75578|FGGY carbohydrate kinase domain containing	BC031708|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr7_-_13404178_13404219	0.00763432	CDX1,2,4.p2	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr3_-_130412297_130412356	0.00762399	CDX1,2,4.p2	AK011085|Ostc|66357|oligosaccharyltransferase complex subunit	AK017845|Ostc|66357|oligosaccharyltransferase complex subunit	AK135332|Ostc|66357|oligosaccharyltransferase complex subunit	AK013011|Ostc|66357|oligosaccharyltransferase complex subunit	AK032969|Ostc|66357|oligosaccharyltransferase complex subunit	AK009237|Ostc|66357|oligosaccharyltransferase complex subunit	BC014799|Ostc|66357|oligosaccharyltransferase complex subunit	BC021935|Ostc|66357|oligosaccharyltransferase complex subunit
mm9_v1_chrX_+_134106087_134106137	0.00758537	CDX1,2,4.p2	AF284437|Il1rapl2|60367|interleukin 1 receptor accessory protein-like 2	NM_030688|Il1rapl2|60367|interleukin 1 receptor accessory protein-like 2	BC119274|Il1rapl2|60367|interleukin 1 receptor accessory protein-like 2	BC120555|Il1rapl2|60367|interleukin 1 receptor accessory protein-like 2
mm9_v1_chr13_+_41111618_41111728	0.00755593	CDX1,2,4.p2	NM_025387|Tmem14c|66154|transmembrane protein 14C	AK010609|Tmem14c|66154|transmembrane protein 14C	AK003891|Tmem14c|66154|transmembrane protein 14C	AK008495|Tmem14c|66154|transmembrane protein 14C	AK019395|Tmem14c|66154|transmembrane protein 14C	AK089021|Tmem14c|66154|transmembrane protein 14C	AK012101|Tmem14c|66154|transmembrane protein 14C	AK050688|Tmem14c|66154|transmembrane protein 14C	BC055862|Tmem14c|66154|transmembrane protein 14C	BC069899|Tmem14c|66154|transmembrane protein 14C	AK008878|Tmem14c|66154|transmembrane protein 14C	BC025854|Tmem14c|66154|transmembrane protein 14C
mm9_v1_chrX_-_12250659_12250764	0.00746214	CDX1,2,4.p2	BC038642|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK078166|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	NM_175141|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK169085|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	BC051146|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK146041|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	AK007661|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene	BC137660|1810030O07Rik|69155|RIKEN cDNA 1810030O07 gene
mm9_v1_chr11_-_101755622_101755677	0.00745984	CDX1,2,4.p2	Z15103|Meox1|17285|mesenchyme homeobox 1	BC011082|Meox1|17285|mesenchyme homeobox 1	NM_010791|Meox1|17285|mesenchyme homeobox 1	AK052370|Meox1|17285|mesenchyme homeobox 1
mm9_v1_chr16_-_4077714_4077843	0.00740868	CDX1,2,4.p2	AK188521|Trap1|68015|TNF receptor-associated protein 1	BC006864|Trap1|68015|TNF receptor-associated protein 1	BC006685|Trap1|68015|TNF receptor-associated protein 1	AK002409|Trap1|68015|TNF receptor-associated protein 1	AK088471|Trap1|68015|TNF receptor-associated protein 1	AK162067|Trap1|68015|TNF receptor-associated protein 1	AK167181|Trap1|68015|TNF receptor-associated protein 1	BC022912|Trap1|68015|TNF receptor-associated protein 1	AK010341|Trap1|68015|TNF receptor-associated protein 1	NM_026508|Trap1|68015|TNF receptor-associated protein 1	AK143494|Trap1|68015|TNF receptor-associated protein 1
mm9_v1_chr17_-_53678775_53678775	0.00713896	CDX1,2,4.p2	AK076579|4921523A10Rik|110332|RIKEN cDNA 4921523A10 gene	NM_173449|4921523A10Rik|110332|RIKEN cDNA 4921523A10 gene
mm9_v1_chr13_-_101500801_101500875	0.00709959	CDX1,2,4.p2	AK145759|Cdk7|12572|cyclin-dependent kinase 7	U11822|Cdk7|12572|cyclin-dependent kinase 7	BC141043|Cdk7|12572|cyclin-dependent kinase 7	BC004605|Cdk7|12572|cyclin-dependent kinase 7
mm9_v1_chr17_-_75951137_75951285	0.00678662	CDX1,2,4.p2	AK167224|Fam98a|72722|family with sequence similarity 98, member A	BC004626|Fam98a|72722|family with sequence similarity 98, member A	AK146955|Fam98a|72722|family with sequence similarity 98, member A	AK046481|Fam98a|72722|family with sequence similarity 98, member A	AK012997|Fam98a|72722|family with sequence similarity 98, member A	AK146215|Fam98a|72722|family with sequence similarity 98, member A	AK146761|Fam98a|72722|family with sequence similarity 98, member A	NM_133747|Fam98a|72722|family with sequence similarity 98, member A
mm9_v1_chr2_+_132088974_132089064	0.00671675	CDX1,2,4.p2	AK050589|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	BC003852|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK147541|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	NM_138651|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK170888|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK036328|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	AK166001|Cds2|110911|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm9_v1_chr3_-_10208575_10208582	0.00661763	CDX1,2,4.p2	AK003143|Fabp4|11770|fatty acid binding protein 4, adipocyte	AK088535|Fabp4|11770|fatty acid binding protein 4, adipocyte	NM_024406|Fabp4|11770|fatty acid binding protein 4, adipocyte
mm9_v1_chr2_+_36086008_36086055	0.00655125	CDX1,2,4.p2	AK138432|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK046457|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK142741|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK163609|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170664|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK160886|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC005573|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	BC023322|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	M34141|Ptgs1|19224|prostaglandin-endoperoxide synthase 1	AK170414|Ptgs1|19224|prostaglandin-endoperoxide synthase 1
mm9_v1_chr15_+_102348622_102348920	0.00652017	CDX1,2,4.p2	AK143188|Tarbp2|21357|TAR (HIV) RNA binding protein 2	NM_009319|Tarbp2|21357|TAR (HIV) RNA binding protein 2	AK144205|Tarbp2|21357|TAR (HIV) RNA binding protein 2	BC053432|Tarbp2|21357|TAR (HIV) RNA binding protein 2	U79962|Tarbp2|21357|TAR (HIV) RNA binding protein 2	BC002028|Tarbp2|21357|TAR (HIV) RNA binding protein 2
mm9_v1_chr18_+_36942877_36943029	0.00649299	CDX1,2,4.p2	AK088789|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK014515|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK145003|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK077621|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	BC004596|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	NM_080636|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr4_+_58298833_58298983	0.00630553	CDX1,2,4.p2	NM_001037127|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037128|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037129|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037130|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001165996|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_010944|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37708|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37709|Musk|18198|muscle, skeletal, receptor tyrosine kinase	BC100342|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY360453|Musk|18198|muscle, skeletal, receptor tyrosine kinase	X86444|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955296|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955297|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955298|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956403|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956404|Musk|18198|muscle, skeletal, receptor tyrosine kinase
mm9_v1_chr5_-_100812885_100812885	0.00625131	CDX1,2,4.p2	BC054358|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chrX_-_75336699_75336712	0.00623979	CDX1,2,4.p2	BC125514|Obp1a|18249|odorant binding protein Ia	BC125516|Obp1a|18249|odorant binding protein Ia	AK017455|Obp1a|18249|odorant binding protein Ia	NM_008754|Obp1a|18249|odorant binding protein Ia
mm9_v1_chr16_-_57606866_57606989	0.00621964	CDX1,2,4.p2	BC038891|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	BC038682|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019808|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK080386|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK003195|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK019979|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK012168|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	AK136657|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene	NM_025599|2610528E23Rik|66497|RIKEN cDNA 2610528E23 gene
mm9_v1_chr1_+_141398282_141398309	0.00618956	CDX1,2,4.p2	NM_031164|F13b|14060|coagulation factor XIII, beta subunit	AK149397|F13b|14060|coagulation factor XIII, beta subunit	D10071|F13b|14060|coagulation factor XIII, beta subunit	BC030166|F13b|14060|coagulation factor XIII, beta subunit
mm9_v1_chr3_+_28704357_28704400	0.00616123	CDX1,2,4.p2	BC120716|Rpl22l1|68028|ribosomal protein L22 like 1	BC120718|Rpl22l1|68028|ribosomal protein L22 like 1
mm9_v1_chr2_+_132641920_132642070	0.00612955	CDX1,2,4.p2	AK012845|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK019268|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK133858|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC046780|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	AK017607|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	BC052070|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)	NM_025676|Mcm8|66634|minichromosome maintenance deficient 8 (S. cerevisiae)
mm9_v1_chr7_-_109835767_109835842	0.00607665	CDX1,2,4.p2	BC034249|Trim68|101700|tripartite motif-containing 68	AK164544|Trim68|101700|tripartite motif-containing 68	AK089546|Trim68|101700|tripartite motif-containing 68	AK155267|Trim68|101700|tripartite motif-containing 68	NM_198012|Trim68|101700|tripartite motif-containing 68
mm9_v1_chr12_+_10397864_10397904	0.00600869	CDX1,2,4.p2	AK142290|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)
mm9_v1_chr5_-_130500116_130500235	0.00600316	CDX1,2,4.p2	AK148764|Asl|109900|argininosuccinate lyase	AK168739|Asl|109900|argininosuccinate lyase	AK138423|Asl|109900|argininosuccinate lyase	BC016670|Asl|109900|argininosuccinate lyase	NM_133768|Asl|109900|argininosuccinate lyase	AK010922|Asl|109900|argininosuccinate lyase	AK076453|Asl|109900|argininosuccinate lyase	AK140160|Asl|109900|argininosuccinate lyase
mm9_v1_chr15_-_79517827_79517983	0.00597691	CDX1,2,4.p2	AK209570|Josd1|74158|Josephin domain containing 1
mm9_v1_chr3_-_135271220_135271233	0.00593632	CDX1,2,4.p2	L28117|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr3_+_86790507_86790507	0.00593475	CDX1,2,4.p2	BC057149|Cd1d2|12480|CD1d2 antigen	NM_007640|Cd1d2|12480|CD1d2 antigen
mm9_v1_chr2_-_121890678_121890752	0.005905	CDX1,2,4.p2	BC019404|Spg11|214585|spastic paraplegia 11
mm9_v1_chr4_+_115894518_115894602	0.00579844	CDX1,2,4.p2	BC053102|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	NM_181585|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK031936|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm9_v1_chr11_+_20443315_20443422	0.00567973	CDX1,2,4.p2	AB041541|Sertad2|58172|SERTA domain containing 2	BC014726|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr11_+_60541880_60542010	0.00567942	CDX1,2,4.p2	NM_001009927|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK156917|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK171444|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	BC088984|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)
mm9_v1_chrX_+_50373295_50373321	0.00563702	CDX1,2,4.p2	AY423851|Hprt|15452|hypoxanthine guanine phosphoribosyl transferase
mm9_v1_chr19_-_56622636_56622751	0.00561823	CDX1,2,4.p2	AK029794|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)	BC076617|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr7_+_28623602_28623625	0.00556683	CDX1,2,4.p2	NM_011762|Zfp59|22717|zinc finger protein 59	AK142951|Zfp59|22717|zinc finger protein 59
mm9_v1_chr14_+_31292750_31292775	0.00555735	CDX1,2,4.p2	AJ344447|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)	NM_133761|Dcp1a|75901|DCP1 decapping enzyme homolog A (S. cerevisiae)
mm9_v1_chr14_+_120674913_120674920	0.00548063	CDX1,2,4.p2	AK220470|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr14_-_79872206_79872215	0.00542287	CDX1,2,4.p2	U40746|Wbp4|22380|WW domain binding protein 4
mm9_v1_chr12_-_47919695_47919761	0.00536144	CDX1,2,4.p2	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr13_-_17786559_17786646	0.00534424	CDX1,2,4.p2	BC055852|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene	NM_138654|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene	BC064756|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene
mm9_v1_chr5_-_104419233_104419272	0.00522857	CDX1,2,4.p2	BC038665|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11
mm9_v1_chrX_-_103207106_103207254	0.00508417	CDX1,2,4.p2	AK144696|Magt1|67075|magnesium transporter 1	AK012185|Magt1|67075|magnesium transporter 1	AK013243|Magt1|67075|magnesium transporter 1	AK136622|Magt1|67075|magnesium transporter 1	BC003881|Magt1|67075|magnesium transporter 1	AK018623|Magt1|67075|magnesium transporter 1	AK010320|Magt1|67075|magnesium transporter 1	DQ000005|Magt1|67075|magnesium transporter 1	NM_001190409|Magt1|67075|magnesium transporter 1	NM_025952|Magt1|67075|magnesium transporter 1
mm9_v1_chr17_+_47506145_47506145	0.00489044	CDX1,2,4.p2	BC048912|Mrps10|64657|mitochondrial ribosomal protein S10	NM_183086|Mrps10|64657|mitochondrial ribosomal protein S10
mm9_v1_chr19_-_5964121_5964180	0.0048169	CDX1,2,4.p2	BC064795|Pola2|18969|polymerase (DNA directed), alpha 2	D13546|Pola2|18969|polymerase (DNA directed), alpha 2	AK150099|Pola2|18969|polymerase (DNA directed), alpha 2	BC006945|Pola2|18969|polymerase (DNA directed), alpha 2	AK045325|Pola2|18969|polymerase (DNA directed), alpha 2	AK152974|Pola2|18969|polymerase (DNA directed), alpha 2	AK153081|Pola2|18969|polymerase (DNA directed), alpha 2	AK163733|Pola2|18969|polymerase (DNA directed), alpha 2	BC021424|Pola2|18969|polymerase (DNA directed), alpha 2
mm9_v1_chr10_-_9620323_9620480	0.00463208	CDX1,2,4.p2	AF516608|Stxbp5|78808|syntaxin binding protein 5 (tomosyn)
mm9_v1_chr4_-_116828657_116828766	0.00460039	CDX1,2,4.p2	BC051446|Rps8|20116|ribosomal protein S8	AK010306|Rps8|20116|ribosomal protein S8	AK011642|Rps8|20116|ribosomal protein S8	AK009023|Rps8|20116|ribosomal protein S8	AK011058|Rps8|20116|ribosomal protein S8	AK012435|Rps8|20116|ribosomal protein S8	AK012562|Rps8|20116|ribosomal protein S8	AK019223|Rps8|20116|ribosomal protein S8	AK088660|Rps8|20116|ribosomal protein S8	AK145478|Rps8|20116|ribosomal protein S8	AK146303|Rps8|20116|ribosomal protein S8	AK146806|Rps8|20116|ribosomal protein S8	AK151544|Rps8|20116|ribosomal protein S8	AK166848|Rps8|20116|ribosomal protein S8	AK168609|Rps8|20116|ribosomal protein S8	BC086899|Rps8|20116|ribosomal protein S8	BC100594|Rps8|20116|ribosomal protein S8	BC081464|Rps8|20116|ribosomal protein S8	AK011048|Rps8|20116|ribosomal protein S8	AK012665|Rps8|20116|ribosomal protein S8	AK010650|Rps8|20116|ribosomal protein S8	NM_009098|Rps8|20116|ribosomal protein S8
mm9_v1_chr5_-_121062483_121062618	0.00453892	CDX1,2,4.p2	BC021365|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	AK003581|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_029096|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_133908|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene
mm9_v1_chrX_-_96665980_96666083	0.00442907	CDX1,2,4.p2	AK005373|Pja1|18744|praja1, RING-H2 motif containing	BC037616|Pja1|18744|praja1, RING-H2 motif containing	AK181060|Pja1|18744|praja1, RING-H2 motif containing	AK181628|Pja1|18744|praja1, RING-H2 motif containing	AK188149|Pja1|18744|praja1, RING-H2 motif containing	BC025975|Pja1|18744|praja1, RING-H2 motif containing	AK145943|Pja1|18744|praja1, RING-H2 motif containing	AF335250|Pja1|18744|praja1, RING-H2 motif containing	AF335251|Pja1|18744|praja1, RING-H2 motif containing	AF335252|Pja1|18744|praja1, RING-H2 motif containing	AK135382|Pja1|18744|praja1, RING-H2 motif containing	NM_001083110|Pja1|18744|praja1, RING-H2 motif containing	NM_008853|Pja1|18744|praja1, RING-H2 motif containing
mm9_v1_chr7_-_53965879_53966065	0.0044229	CDX1,2,4.p2	BC019985|Saal1|78935|serum amyloid A-like 1	BC068127|Saal1|78935|serum amyloid A-like 1	AK019878|Saal1|78935|serum amyloid A-like 1	AK132193|Saal1|78935|serum amyloid A-like 1	NM_030233|Saal1|78935|serum amyloid A-like 1	AK030833|Saal1|78935|serum amyloid A-like 1	AK134418|Saal1|78935|serum amyloid A-like 1	AK033202|Saal1|78935|serum amyloid A-like 1	AK035874|Saal1|78935|serum amyloid A-like 1	BC087944|Saal1|78935|serum amyloid A-like 1
mm9_v1_chr11_-_97643677_97643690	0.00440968	CDX1,2,4.p2	AK168133|Rpl23|65019|ribosomal protein L23	AF287271|Rpl23|65019|ribosomal protein L23	BC025918|Rpl23|65019|ribosomal protein L23	BC081448|Rpl23|65019|ribosomal protein L23
mm9_v1_chr8_-_41393270_41393282	0.0042527	CDX1,2,4.p2	AK005145|1500004F05Rik|69765|RIKEN cDNA 1500004F05 gene
mm9_v1_chr12_+_75028976_75029036	0.0042503	CDX1,2,4.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr13_-_105606826_105607032	0.00424974	CDX1,2,4.p2	BC025437|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK077779|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK075902|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK014025|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK166770|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	NM_026072|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)
mm9_v1_chr8_-_114457667_114457780	0.00420923	CDX1,2,4.p2	BC100402|Tmem231|234740|transmembrane protein 231	AK155425|Tmem231|234740|transmembrane protein 231	NM_001033321|Tmem231|234740|transmembrane protein 231	AK030046|Tmem231|234740|transmembrane protein 231	BC132428|Tmem231|234740|transmembrane protein 231	BC132430|Tmem231|234740|transmembrane protein 231
mm9_v1_chr15_-_54903657_54903709	0.00419929	CDX1,2,4.p2	BC147638|Taf2|319944|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC151079|Taf2|319944|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK147903|Taf2|319944|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001081288|Taf2|319944|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chrX_+_106290703_106290922	0.00415847	CDX1,2,4.p2	BC043055|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	NM_019989|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK218315|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	BC034161|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151871|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK165995|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK146588|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK150604|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151095|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK049929|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AK151501|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like	AJ272504|Sh3bgrl|56726|SH3-binding domain glutamic acid-rich protein like
mm9_v1_chr11_-_116712559_116712636	0.00400849	CDX1,2,4.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr16_-_10314010_10314073	0.00392662	CDX1,2,4.p2	AK076194|Emp2|13731|epithelial membrane protein 2	AK077260|Emp2|13731|epithelial membrane protein 2	NM_007929|Emp2|13731|epithelial membrane protein 2
mm9_v1_chr11_-_54674080_54674223	0.00392228	CDX1,2,4.p2	NM_029327|Lyrm7|75530|LYR motif containing 7	BC139403|Lyrm7|75530|LYR motif containing 7	BC139406|Lyrm7|75530|LYR motif containing 7
mm9_v1_chr11_-_103815361_103815405	0.00388765	CDX1,2,4.p2	BC006627|Nsf|18195|N-ethylmaleimide sensitive fusion protein	NM_008740|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr11_-_17853850_17853896	0.00387473	CDX1,2,4.p2	BC028916|Etaa1|68145|Ewing's tumor-associated antigen 1	AK034138|Etaa1|68145|Ewing's tumor-associated antigen 1	AK019965|Etaa1|68145|Ewing's tumor-associated antigen 1	NM_026576|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr3_-_53267127_53267244	0.00383729	CDX1,2,4.p2	AK133986|Nhlrc3|212114|NHL repeat containing 3	BC087903|Nhlrc3|212114|NHL repeat containing 3	BC107356|Nhlrc3|212114|NHL repeat containing 3	AK029465|Nhlrc3|212114|NHL repeat containing 3	AK033167|Nhlrc3|212114|NHL repeat containing 3	NM_172501|Nhlrc3|212114|NHL repeat containing 3	AK162824|Nhlrc3|212114|NHL repeat containing 3	AK220477|Nhlrc3|212114|NHL repeat containing 3
mm9_v1_chr6_-_48658182_48658205	0.00381385	CDX1,2,4.p2	AK050328|Gimap6|231931|GTPase, IMAP family member 6	AK160244|Gimap6|231931|GTPase, IMAP family member 6	BC028779|Gimap6|231931|GTPase, IMAP family member 6
mm9_v1_chr3_-_97672147_97672234	0.00377906	CDX1,2,4.p2	AK141917|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_177145|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr3_+_96400524_96400617	0.00365884	CDX1,2,4.p2	NM_001024851|Ankrd34a|545554|ankyrin repeat domain 34A	BC052924|Ankrd34a|545554|ankyrin repeat domain 34A
mm9_v1_chr10_-_90582332_90582452	0.00364068	CDX1,2,4.p2	AK195219|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK212727|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK216642|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK180258|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK188364|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr17_-_56323312_56323363	0.00360852	CDX1,2,4.p2	AY038184|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008854|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK018016|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK133947|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK008289|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK162834|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK004074|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	AK148083|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	NM_080837|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132127|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed	BC132129|D17Wsu104e|28106|DNA segment, Chr 17, Wayne State University 104, expressed
mm9_v1_chr1_-_135557925_135557932	0.00349508	CDX1,2,4.p2	BC066163|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr5_+_115956682_115956792	0.00341361	CDX1,2,4.p2	AK171226|Pxn|19303|paxillin	AK148060|Pxn|19303|paxillin	NM_011223|Pxn|19303|paxillin	NM_133915|Pxn|19303|paxillin	AK149933|Pxn|19303|paxillin	AK171436|Pxn|19303|paxillin	BC025493|Pxn|19303|paxillin	AK167299|Pxn|19303|paxillin	AF293882|Pxn|19303|paxillin
mm9_v1_chr18_+_78020559_78020576	0.00332607	CDX1,2,4.p2	
mm9_v1_chr16_-_32003130_32003169	0.00326044	CDX1,2,4.p2	BC067014|Senp5|320213|SUMO/sentrin specific peptidase 5
mm9_v1_chr8_+_119983566_119983649	0.00325051	CDX1,2,4.p2	AK049761|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr11_-_120410992_120411040	0.00323461	CDX1,2,4.p2	BC025536|Fam195b|192173|family with sequence similarity 195, member B	AK147780|Fam195b|192173|family with sequence similarity 195, member B	NM_001033231|Fam195b|192173|family with sequence similarity 195, member B
mm9_v1_chr2_-_60591836_60591898	0.0031879	CDX1,2,4.p2	AK159851|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr2_-_105227142_105227176	0.00311625	CDX1,2,4.p2	BC051551|Rcn1|19672|reticulocalbin 1
mm9_v1_chr13_+_34056507_34056641	0.00306975	CDX1,2,4.p2	NM_001163239|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	NM_001163241|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	NM_020282|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK008138|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK008465|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK010842|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	AK049781|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2	BC027629|Nqo2|18105|NAD(P)H dehydrogenase, quinone 2
mm9_v1_chr9_-_99287199_99287315	0.00306311	CDX1,2,4.p2	AK013800|Mras|17532|muscle and microspikes RAS
mm9_v1_chr1_+_157405657_157405756	0.00305409	CDX1,2,4.p2	BC115580|Acbd6|72482|acyl-Coenzyme A binding domain containing 6	BC115581|Acbd6|72482|acyl-Coenzyme A binding domain containing 6
mm9_v1_chr2_-_85745208_85745208	0.00299182	CDX1,2,4.p2	BC119447|Olfr1024|257900|olfactory receptor 1024	NM_001005230|Olfr1024|257900|olfactory receptor 1024
mm9_v1_chr11_+_108811065_108811123	0.00296088	CDX1,2,4.p2	
mm9_v1_chr13_+_97907891_97907994	0.00295194	CDX1,2,4.p2	AK044371|Gfm2|320806|G elongation factor, mitochondrial 2	NM_001146043|Gfm2|320806|G elongation factor, mitochondrial 2	NM_177266|Gfm2|320806|G elongation factor, mitochondrial 2	AK165871|Gfm2|320806|G elongation factor, mitochondrial 2	AK028450|Gfm2|320806|G elongation factor, mitochondrial 2	AK082054|Gfm2|320806|G elongation factor, mitochondrial 2	AK167185|Gfm2|320806|G elongation factor, mitochondrial 2	AK035819|Gfm2|320806|G elongation factor, mitochondrial 2	AK020100|Gfm2|320806|G elongation factor, mitochondrial 2	AK161797|Gfm2|320806|G elongation factor, mitochondrial 2	AK083441|Gfm2|320806|G elongation factor, mitochondrial 2	BC138233|Gfm2|320806|G elongation factor, mitochondrial 2	BC145208|Gfm2|320806|G elongation factor, mitochondrial 2
mm9_v1_chr18_+_80315134_80315153	0.00293192	CDX1,2,4.p2	AK010699|Pard6g|93737|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm9_v1_chr1_+_180249260_180249302	0.00285425	CDX1,2,4.p2	NM_025511|Fam36a|66359|family with sequence similarity 36, member A	BC059717|Fam36a|66359|family with sequence similarity 36, member A	AK009178|Fam36a|66359|family with sequence similarity 36, member A	BC055277|Fam36a|66359|family with sequence similarity 36, member A
mm9_v1_chr4_-_107743887_107743940	0.00284764	CDX1,2,4.p2	AK002425|Scp2|20280|sterol carrier protein 2, liver
mm9_v1_chr10_+_61245998_61246044	0.00280258	CDX1,2,4.p2	
mm9_v1_chr5_+_24728685_24728824	0.00278663	CDX1,2,4.p2	NM_144908|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	BC021504|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK088014|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK084596|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	BC011428|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK079811|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm9_v1_chr2_+_162758440_162758589	0.00272843	CDX1,2,4.p2	AK051608|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr10_+_80599005_80599015	0.00272075	CDX1,2,4.p2	BC024815|Zbtb7a|16969|zinc finger and BTB domain containing 7a	NM_010731|Zbtb7a|16969|zinc finger and BTB domain containing 7a
mm9_v1_chr5_-_124028994_124029065	0.00261257	CDX1,2,4.p2	AK003546|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr12_-_100801791_100801815	0.00248514	CDX1,2,4.p2	AK053772|Foxn3|71375|forkhead box N3
mm9_v1_chr15_+_75771381_75771478	0.00247994	CDX1,2,4.p2	AK046806|Zfp623|78834|zinc finger protein 623	AY610936|Zfp623|78834|zinc finger protein 623	NM_030199|Zfp623|78834|zinc finger protein 623	AK169386|Zfp623|78834|zinc finger protein 623	AK172985|Zfp623|78834|zinc finger protein 623	AK030476|Zfp623|78834|zinc finger protein 623	BC021834|Zfp623|78834|zinc finger protein 623
mm9_v1_chr6_+_29222664_29222676	0.00247455	CDX1,2,4.p2	AK144676|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	AK009377|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr7_-_129245303_129245368	0.00242031	CDX1,2,4.p2	AK167447|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK089103|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC092379|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC060951|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018717|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK008788|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK009698|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK010307|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK011302|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018688|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK151719|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK152995|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	NM_028177|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr19_+_55816320_55816547	0.00238033	CDX1,2,4.p2	AK132465|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	AK035059|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	AF107298|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chrX_+_96133407_96133568	0.00232738	CDX1,2,4.p2	AK045453|Yipf6|77929|Yip1 domain family, member 6	BC048712|Yipf6|77929|Yip1 domain family, member 6	AK079683|Yipf6|77929|Yip1 domain family, member 6	AK020780|Yipf6|77929|Yip1 domain family, member 6	AK143152|Yipf6|77929|Yip1 domain family, member 6
mm9_v1_chr11_-_85048228_85048358	0.00220773	CDX1,2,4.p2	AK122222|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK132963|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2	AK005440|Appbp2|66884|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm9_v1_chr8_-_27109536_27109553	0.00213192	CDX1,2,4.p2	
mm9_v1_chrX_-_102265380_102265463	0.00207792	CDX1,2,4.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr3_+_94203140_94203230	0.00191278	CDX1,2,4.p2	AK040952|Lingo4|320747|leucine rich repeat and Ig domain containing 4	NM_177250|Lingo4|320747|leucine rich repeat and Ig domain containing 4	BC117866|Lingo4|320747|leucine rich repeat and Ig domain containing 4	BC117867|Lingo4|320747|leucine rich repeat and Ig domain containing 4
mm9_v1_chr13_-_93258004_93258035	0.00187493	CDX1,2,4.p2	AK134948|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr10_+_23908526_23908598	0.00183036	CDX1,2,4.p2	AK198523|Stx7|53331|syntaxin 7
mm9_v1_chr1_+_169238962_169239047	0.00179548	CDX1,2,4.p2	
mm9_v1_chr3_+_30691760_30691806	0.0017869	CDX1,2,4.p2	BC017162|Sec62|69276|SEC62 homolog (S. cerevisiae)	NM_027016|Sec62|69276|SEC62 homolog (S. cerevisiae)
mm9_v1_chr8_+_28134259_28134401	0.00177694	CDX1,2,4.p2	BC036333|Erlin2|244373|ER lipid raft associated 2	AK030557|Erlin2|244373|ER lipid raft associated 2	BC038374|Erlin2|244373|ER lipid raft associated 2	NM_153592|Erlin2|244373|ER lipid raft associated 2
mm9_v1_chr17_+_36002537_36002569	0.00160056	CDX1,2,4.p2	BC025573|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene	NM_001146711|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene	BC145183|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene	BC150725|2310014H01Rik|76448|RIKEN cDNA 2310014H01 gene
mm9_v1_chr11_+_11362087_11362098	0.00158884	CDX1,2,4.p2	
mm9_v1_chr7_-_20093663_20093722	0.0015356	CDX1,2,4.p2	BC043666|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	NM_177692|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK054006|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK153811|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3
mm9_v1_chr11_-_20612281_20612323	0.00151725	CDX1,2,4.p2	AK150458|Aftph|216549|aftiphilin	AK152308|Aftph|216549|aftiphilin	AK152487|Aftph|216549|aftiphilin	AK161532|Aftph|216549|aftiphilin
mm9_v1_chrX_+_71696434_71696477	0.00143616	CDX1,2,4.p2	AK042138|Ikbkg|16151|inhibitor of kappaB kinase gamma	BC026905|Ikbkg|16151|inhibitor of kappaB kinase gamma
mm9_v1_chr4_+_102243272_102243317	0.00142923	CDX1,2,4.p2	AK011999|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC007155|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr10_-_114799212_114799324	0.00140751	CDX1,2,4.p2	AK136778|Tmem19|67226|transmembrane protein 19	AK170143|Tmem19|67226|transmembrane protein 19	AK171087|Tmem19|67226|transmembrane protein 19	AK018383|Tmem19|67226|transmembrane protein 19	AK155275|Tmem19|67226|transmembrane protein 19	AK042426|Tmem19|67226|transmembrane protein 19	AK079735|Tmem19|67226|transmembrane protein 19	BC016895|Tmem19|67226|transmembrane protein 19	AK036228|Tmem19|67226|transmembrane protein 19	AK138931|Tmem19|67226|transmembrane protein 19	NM_133683|Tmem19|67226|transmembrane protein 19	AK034298|Tmem19|67226|transmembrane protein 19
mm9_v1_chr1_+_82721477_82721553	0.00132659	CDX1,2,4.p2	BC059229|Mff|75734|mitochondrial fission factor	NM_029409|Mff|75734|mitochondrial fission factor	AK017226|Mff|75734|mitochondrial fission factor	AK083056|Mff|75734|mitochondrial fission factor	AK139649|Mff|75734|mitochondrial fission factor
mm9_v1_chr2_-_23904890_23904898	0.00132119	CDX1,2,4.p2	BC033928|Hnmt|140483|histamine N-methyltransferase	AB070524|Hnmt|140483|histamine N-methyltransferase	AF297037|Hnmt|140483|histamine N-methyltransferase	NM_080462|Hnmt|140483|histamine N-methyltransferase
mm9_v1_chr10_-_20880559_20880789	0.00131377	CDX1,2,4.p2	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr18_+_75165496_75165648	0.00130656	CDX1,2,4.p2	AK077642|BC031181|407819|cDNA sequence BC031181	BC016084|BC031181|407819|cDNA sequence BC031181	NM_001001181|BC031181|407819|cDNA sequence BC031181	AK131658|BC031181|407819|cDNA sequence BC031181	BC031181|BC031181|407819|cDNA sequence BC031181	BC027819|BC031181|407819|cDNA sequence BC031181	AK180483|BC031181|407819|cDNA sequence BC031181	AK187367|BC031181|407819|cDNA sequence BC031181
mm9_v1_chr14_+_103446209_103446258	0.00129518	CDX1,2,4.p2	NM_008392|Irg1|16365|immunoresponsive gene 1	AK152177|Irg1|16365|immunoresponsive gene 1	AK152248|Irg1|16365|immunoresponsive gene 1	AK152332|Irg1|16365|immunoresponsive gene 1	AK152635|Irg1|16365|immunoresponsive gene 1	AK153013|Irg1|16365|immunoresponsive gene 1	AK172298|Irg1|16365|immunoresponsive gene 1	AK172001|Irg1|16365|immunoresponsive gene 1	AK089891|Irg1|16365|immunoresponsive gene 1
mm9_v1_chr13_-_67738689_67738740	0.00126807	CDX1,2,4.p2	AK138962|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene	NM_183146|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene	BC098180|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene	AK040978|A530054K11Rik|212281|RIKEN cDNA A530054K11 gene
mm9_v1_chr5_+_119214502_119214629	0.00123555	CDX1,2,4.p2	AK018557|Med13l|76199|mediator complex subunit 13-like
mm9_v1_chr17_-_34077264_34077287	0.00112181	CDX1,2,4.p2	AK076015|H2-Ke2|14976|H2-K region expressed gene 2	AK167900|H2-Ke2|14976|H2-K region expressed gene 2	NM_001185182|H2-Ke2|14976|H2-K region expressed gene 2	AK010679|H2-Ke2|14976|H2-K region expressed gene 2	NM_010385|H2-Ke2|14976|H2-K region expressed gene 2
mm9_v1_chr7_+_5013744_5013873	0.00111617	CDX1,2,4.p2	BC043071|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	NM_133671|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	AK078496|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	X64587|U2af2|22185|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2
mm9_v1_chr4_+_57906588_57906598	0.0010724	CDX1,2,4.p2	AK081365|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr13_+_48356795_48356817	0.001072	CDX1,2,4.p2	NM_031166|Id4|15904|inhibitor of DNA binding 4	X75018|Id4|15904|inhibitor of DNA binding 4	BC145367|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr16_+_16213434_16213437	0.00101228	CDX1,2,4.p2	AK004650|Pkp2|67451|plakophilin 2	AK004731|Pkp2|67451|plakophilin 2	AK049481|Pkp2|67451|plakophilin 2	AK162000|Pkp2|67451|plakophilin 2	AK167660|Pkp2|67451|plakophilin 2	BC138252|Pkp2|67451|plakophilin 2	BC138253|Pkp2|67451|plakophilin 2	NM_026163|Pkp2|67451|plakophilin 2
mm9_v1_chr12_+_50483869_50483993	0.000992935	CDX1,2,4.p2	AK132305|Foxg1|15228|forkhead box G1	NM_001160112|Foxg1|15228|forkhead box G1	NM_008241|Foxg1|15228|forkhead box G1	U36760|Foxg1|15228|forkhead box G1
mm9_v1_chr7_-_133943848_133943969	0.000978058	CDX1,2,4.p2	AK154295|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177308|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr13_-_48608795_48608824	0.000927759	CDX1,2,4.p2	AK162962|Zfp169|67911|zinc finger protein 169	AK086737|Zfp169|67911|zinc finger protein 169	NM_001164576|Zfp169|67911|zinc finger protein 169	NM_026450|Zfp169|67911|zinc finger protein 169
mm9_v1_chr1_-_33726582_33726638	0.000907232	CDX1,2,4.p2	D17385|Prim2|19076|DNA primase, p58 subunit	AK153970|Prim2|19076|DNA primase, p58 subunit	BC019500|Prim2|19076|DNA primase, p58 subunit	D13545|Prim2|19076|DNA primase, p58 subunit	NM_008922|Prim2|19076|DNA primase, p58 subunit	AK076095|Prim2|19076|DNA primase, p58 subunit	AK077760|Prim2|19076|DNA primase, p58 subunit	AK168246|Prim2|19076|DNA primase, p58 subunit
mm9_v1_chr3_-_148617598_148617598	0.00078977	CDX1,2,4.p2	NM_001081298|Lphn2|99633|latrophilin 2
mm9_v1_chr17_-_35371948_35372113	0.000723009	CDX1,2,4.p2	X96706|Nfkbil1|18038|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1
mm9_v1_chr9_-_114473486_114473486	0.000709293	CDX1,2,4.p2	DQ005956|Trim71|636931|tripartite motif-containing 71	NM_001042503|Trim71|636931|tripartite motif-containing 71
mm9_v1_chr4_-_107791061_107791155	0.000528499	CDX1,2,4.p2	M91458|Scp2|20280|sterol carrier protein 2, liver	BC034613|Scp2|20280|sterol carrier protein 2, liver	AK004860|Scp2|20280|sterol carrier protein 2, liver	BC018384|Scp2|20280|sterol carrier protein 2, liver	NM_011327|Scp2|20280|sterol carrier protein 2, liver
mm9_v1_chr7_+_6315986_6316086	0.00049036	CDX1,2,4.p2	AK134974|Zfp78|330463|zinc finger protein 78	NM_001025163|Zfp78|330463|zinc finger protein 78	NM_001112805|Zfp78|330463|zinc finger protein 78	NM_177888|Zfp78|330463|zinc finger protein 78	AK163133|Zfp78|330463|zinc finger protein 78	BC085322|Zfp78|330463|zinc finger protein 78	AK039658|Zfp78|330463|zinc finger protein 78	AK173164|Zfp78|330463|zinc finger protein 78
mm9_v1_chrY_-_622984_622997	0.000435196	CDX1,2,4.p2	BC021453|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr6_+_31348811_31348859	0.000417539	CDX1,2,4.p2	AK037967|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	NM_013791|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK165239|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK077541|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK164822|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	BC013703|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK171980|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	U72194|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs	AK155457|Mkln1|27418|muskelin 1, intracellular mediator containing kelch motifs
mm9_v1_chr5_-_110537215_110537219	0.000353018	CDX1,2,4.p2	AK144812|Gtpbp6|107999|GTP binding protein 6 (putative)	AK152225|Gtpbp6|107999|GTP binding protein 6 (putative)	AK152972|Gtpbp6|107999|GTP binding protein 6 (putative)	NM_145147|Gtpbp6|107999|GTP binding protein 6 (putative)
mm9_v1_chr10_-_33671000_33671074	0.00027208	CDX1,2,4.p2	AK052071|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK160928|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK046191|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK164710|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	NM_028287|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK012263|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	BC089514|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK077730|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK164346|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK077304|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK172184|Zufsp|72580|zinc finger with UFM1-specific peptidase domain
mm9_v1_chr11_-_79775842_79775900	0.000217139	CDX1,2,4.p2	BC018250|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	BC023920|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK084976|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	BC024850|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK029151|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	NM_144826|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK164010|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)	AK169785|Utp6|216987|UTP6, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr11_+_11586273_11586432	0.000188778	CDX1,2,4.p2	BC138789|Ikzf1|22778|IKAROS family zinc finger 1
mm9_v1_chr11_-_75992950_75993004	0.000175179	CDX1,2,4.p2	AK049259|Vps53|68299|vacuolar protein sorting 53 (yeast)
mm9_v1_chr13_-_3892788_3892823	0.000165566	CDX1,2,4.p2	AJ010045|Net1|56349|neuroepithelial cell transforming gene 1	AK020636|Net1|56349|neuroepithelial cell transforming gene 1	AK088632|Net1|56349|neuroepithelial cell transforming gene 1	AK139921|Net1|56349|neuroepithelial cell transforming gene 1	BC004699|Net1|56349|neuroepithelial cell transforming gene 1	AK082128|Net1|56349|neuroepithelial cell transforming gene 1	NM_001047159|Net1|56349|neuroepithelial cell transforming gene 1
mm9_v1_chr3_-_95862377_95862377	0.000149494	CDX1,2,4.p2	NM_013841|Vps45|22365|vacuolar protein sorting 45 (yeast)	U66865|Vps45|22365|vacuolar protein sorting 45 (yeast)
mm9_v1_chr2_-_90744808_90744892	9.51963e-05	CDX1,2,4.p2	AK160888|Ndufs3|68349|NADH dehydrogenase (ubiquinone) Fe-S protein 3	BC027270|Ndufs3|68349|NADH dehydrogenase (ubiquinone) Fe-S protein 3	BC119267|Ndufs3|68349|NADH dehydrogenase (ubiquinone) Fe-S protein 3	BC119269|Ndufs3|68349|NADH dehydrogenase (ubiquinone) Fe-S protein 3	AK002501|Ndufs3|68349|NADH dehydrogenase (ubiquinone) Fe-S protein 3	AK088337|Ndufs3|68349|NADH dehydrogenase (ubiquinone) Fe-S protein 3	NM_026688|Ndufs3|68349|NADH dehydrogenase (ubiquinone) Fe-S protein 3
mm9_v1_chr10_-_93498449_93498481	6.40536e-05	CDX1,2,4.p2	AY753561|Vezt|215008|vezatin, adherens junctions transmembrane protein	AY753562|Vezt|215008|vezatin, adherens junctions transmembrane protein	DQ025533|Vezt|215008|vezatin, adherens junctions transmembrane protein	BC056428|Vezt|215008|vezatin, adherens junctions transmembrane protein
mm9_v1_chr10_+_88194103_88194147	3.48104e-05	CDX1,2,4.p2	AK088330|Arl1|104303|ADP-ribosylation factor-like 1	AK009226|Arl1|104303|ADP-ribosylation factor-like 1	BC116894|Arl1|104303|ADP-ribosylation factor-like 1	BC116896|Arl1|104303|ADP-ribosylation factor-like 1
