mm9_v1_chr5_+_136282748_136282767	2.48718	CTCF.p2	AB041661|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr5_-_138182307_138182329	1.84588	CTCF.p2	AK141276|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene
mm9_v1_chr9_-_96789818_96789892	1.82886	CTCF.p2	AK164254|Acpl2|235534|acid phosphatase-like 2	AK083712|Acpl2|235534|acid phosphatase-like 2	BC023960|Acpl2|235534|acid phosphatase-like 2	BC036342|Acpl2|235534|acid phosphatase-like 2	NM_153420|Acpl2|235534|acid phosphatase-like 2	AK043758|Acpl2|235534|acid phosphatase-like 2	AK082059|Acpl2|235534|acid phosphatase-like 2	AK084605|Acpl2|235534|acid phosphatase-like 2	AK144699|Acpl2|235534|acid phosphatase-like 2	AK036973|Acpl2|235534|acid phosphatase-like 2
mm9_v1_chr8_-_112692071_112692144	1.8248	CTCF.p2	BC017646|Calb2|12308|calbindin 2	NM_007586|Calb2|12308|calbindin 2	AK032171|Calb2|12308|calbindin 2
mm9_v1_chr11_+_114529837_114529938	1.80481	CTCF.p2	AB037665|Rpl38|67671|ribosomal protein L38	NM_001048057|Rpl38|67671|ribosomal protein L38	NM_023372|Rpl38|67671|ribosomal protein L38	AK002659|Rpl38|67671|ribosomal protein L38	AK010518|Rpl38|67671|ribosomal protein L38	AK012391|Rpl38|67671|ribosomal protein L38	BC055346|Rpl38|67671|ribosomal protein L38	BC034339|Rpl38|67671|ribosomal protein L38	AK010277|Rpl38|67671|ribosomal protein L38	AK151517|Rpl38|67671|ribosomal protein L38	BC047046|Rpl38|67671|ribosomal protein L38
mm9_v1_chr2_+_157740281_157740500	1.80435	CTCF.p2	NM_198627|Vstm2l|277432|V-set and transmembrane domain containing 2-like	BC058538|Vstm2l|277432|V-set and transmembrane domain containing 2-like
mm9_v1_chr18_-_43552694_43552984	1.79712	CTCF.p2	BC023003|Dpysl3|22240|dihydropyrimidinase-like 3	NM_009468|Dpysl3|22240|dihydropyrimidinase-like 3	X87817|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr13_-_58009653_58009693	1.74852	CTCF.p2	AK049019|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK039058|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	X92864|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK036189|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166463|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166464|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166465|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166466|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_009262|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chrX_+_20240021_20240121	1.74012	CTCF.p2	AK081808|Uba1|22201|ubiquitin-like modifier activating enzyme 1	AK171667|Uba1|22201|ubiquitin-like modifier activating enzyme 1	BC058630|Uba1|22201|ubiquitin-like modifier activating enzyme 1	NM_001136085|Uba1|22201|ubiquitin-like modifier activating enzyme 1	AK143416|Uba1|22201|ubiquitin-like modifier activating enzyme 1
mm9_v1_chr16_-_30550622_30550663	1.53375	CTCF.p2	AK031524|Tmem44|224090|transmembrane protein 44	AK045675|Tmem44|224090|transmembrane protein 44	AK048655|Tmem44|224090|transmembrane protein 44	NM_172614|Tmem44|224090|transmembrane protein 44
mm9_v1_chr2_-_65405546_65405588	1.53112	CTCF.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr8_+_114060341_114060576	1.4944	CTCF.p2	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr9_-_107612238_107612349	1.37532	CTCF.p2	AK140340|Sema3f|20350|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm9_v1_chr8_-_73397377_73397396	1.37122	CTCF.p2	AK088037|Ccdc124|234388|coiled-coil domain containing 124	AK007589|Ccdc124|234388|coiled-coil domain containing 124	BC049678|Ccdc124|234388|coiled-coil domain containing 124	NM_026964|Ccdc124|234388|coiled-coil domain containing 124
mm9_v1_chr11_-_102308966_102308985	1.34266	CTCF.p2	NM_199200|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr6_-_89312545_89312689	1.31817	CTCF.p2	D86948|Plxna1|18844|plexin A1	NM_008881|Plxna1|18844|plexin A1
mm9_v1_chr8_-_87461251_87461273	1.29613	CTCF.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr6_+_148303173_148303234	1.26724	CTCF.p2	AK004068|Rps4y2|66184|ribosomal protein S4, Y-linked 2	AK012382|Rps4y2|66184|ribosomal protein S4, Y-linked 2	AK132160|Rps4y2|66184|ribosomal protein S4, Y-linked 2	BC047994|Rps4y2|66184|ribosomal protein S4, Y-linked 2
mm9_v1_chr11_-_45758413_45758456	1.24839	CTCF.p2	AF514309|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	BC094286|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK143661|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK082292|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	NM_028185|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11
mm9_v1_chr18_-_62071494_62071513	1.1	CTCF.p2	NM_001164491|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr2_+_152495244_152495317	1.09444	CTCF.p2	AK051151|H13|14950|histocompatibility 13	AK050664|H13|14950|histocompatibility 13	AK171790|H13|14950|histocompatibility 13	AF515662|H13|14950|histocompatibility 13
mm9_v1_chr2_-_53937785_53937964	1.07981	CTCF.p2	BC030065|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK014769|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AB043586|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK010465|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	NM_023396|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate
mm9_v1_chr5_-_143667004_143667334	1.06908	CTCF.p2	AK218610|Actb|11461|actin, beta	AK206771|Actb|11461|actin, beta	AK208252|Actb|11461|actin, beta	AK202772|Actb|11461|actin, beta	M12481|Actb|11461|actin, beta	X03765|Actb|11461|actin, beta	EF095208|Actb|11461|actin, beta
mm9_v1_chr11_+_77576790_77576810	1.05759	CTCF.p2	AK146852|Myo18a|360013|myosin XVIIIA
mm9_v1_chr1_+_155596555_155596633	1.02997	CTCF.p2	AK140815|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	NM_011882|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	BC003873|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm9_v1_chr4_-_43038575_43038674	1.01795	CTCF.p2	AK220315|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC141058|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	AB038560|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	NM_020035|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC092394|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC036977|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	AK050819|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O
mm9_v1_chr17_-_35972795_35972854	1.01693	CTCF.p2	AK188125|Tubb5|22154|tubulin, beta 5
mm9_v1_chr1_+_174412343_174412487	0.970785	CTCF.p2	NM_001145800|Igsf9|93842|immunoglobulin superfamily, member 9	AK053544|Igsf9|93842|immunoglobulin superfamily, member 9	AK078536|Igsf9|93842|immunoglobulin superfamily, member 9	BC034594|Igsf9|93842|immunoglobulin superfamily, member 9	AK145121|Igsf9|93842|immunoglobulin superfamily, member 9	AF317839|Igsf9|93842|immunoglobulin superfamily, member 9	NM_033608|Igsf9|93842|immunoglobulin superfamily, member 9	BC040281|Igsf9|93842|immunoglobulin superfamily, member 9
mm9_v1_chr18_-_62071451_62071482	0.945396	CTCF.p2	BC094229|Ablim3|319713|actin binding LIM protein family, member 3	AK082380|Ablim3|319713|actin binding LIM protein family, member 3	BC060275|Ablim3|319713|actin binding LIM protein family, member 3	NM_198649|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr19_-_12576485_12576634	0.936068	CTCF.p2	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr2_+_3035629_3035684	0.925547	CTCF.p2	NM_001081161|Fam171a1|269233|family with sequence similarity 171, member A1	AK032237|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr3_-_88964078_88964108	0.924455	CTCF.p2	AJ225124|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	NM_008227|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	AK032225|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3
mm9_v1_chr2_-_152841062_152841101	0.92222	CTCF.p2	AY286302|Pdrg1|68559|p53 and DNA damage regulated 1
mm9_v1_chr11_+_78640103_78640114	0.909872	CTCF.p2	BC130224|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK009070|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr5_-_108863376_108863419	0.902835	CTCF.p2	S52977|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	BC089550|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	BC028438|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	NM_007507|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	AK011342|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e
mm9_v1_chr8_+_73988823_73988883	0.873668	CTCF.p2	NM_053162|Mrpl34|94065|mitochondrial ribosomal protein L34	BC052086|Mrpl34|94065|mitochondrial ribosomal protein L34	AB049653|Mrpl34|94065|mitochondrial ribosomal protein L34	BC056979|Mrpl34|94065|mitochondrial ribosomal protein L34	AK018724|Mrpl34|94065|mitochondrial ribosomal protein L34	AK170156|Mrpl34|94065|mitochondrial ribosomal protein L34
mm9_v1_chr9_-_36954842_36954852	0.868216	CTCF.p2	AK144270|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK084178|Pknox2|208076|Pbx/knotted 1 homeobox 2	AK082952|Pknox2|208076|Pbx/knotted 1 homeobox 2	NM_001029838|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chr13_+_51196154_51196300	0.862498	CTCF.p2	AK168544|Spin1|20729|spindlin 1	NM_146043|Spin1|20729|spindlin 1	BC016517|Spin1|20729|spindlin 1	AK134259|Spin1|20729|spindlin 1
mm9_v1_chr7_+_116077911_116077933	0.833964	CTCF.p2	AK152037|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	NM_025344|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK002778|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK003372|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK088537|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK136797|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK010333|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr19_+_6418755_6418803	0.820495	CTCF.p2	AK147295|Nrxn2|18190|neurexin II	AK147665|Nrxn2|18190|neurexin II
mm9_v1_chr15_-_36426543_36426556	0.819051	CTCF.p2	BC035553|Ankrd46|68839|ankyrin repeat domain 46	NM_175134|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr2_+_25258568_25258631	0.802114	CTCF.p2	BC003320|Npdc1|18146|neural proliferation, differentiation and control gene 1	NM_008721|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr13_-_58009599_58009635	0.800773	CTCF.p2	BC158020|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	BC075625|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr1_+_165709713_165709842	0.800176	CTCF.p2	AK013954|Kifap3|16579|kinesin-associated protein 3	BC049100|Kifap3|16579|kinesin-associated protein 3	D50366|Kifap3|16579|kinesin-associated protein 3	D50367|Kifap3|16579|kinesin-associated protein 3	NM_010629|Kifap3|16579|kinesin-associated protein 3
mm9_v1_chr5_-_135554038_135554160	0.783655	CTCF.p2	BC044789|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK158287|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK090181|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY081953|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY352519|Vps37d|194309|vacuolar protein sorting 37D (yeast)	NM_177574|Vps37d|194309|vacuolar protein sorting 37D (yeast)
mm9_v1_chr7_+_116077936_116077945	0.773361	CTCF.p2	BC070473|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	BC083190|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr9_-_45714959_45715007	0.749772	CTCF.p2	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr8_-_20020350_20020421	0.737105	CTCF.p2	BC025151|2610005L07Rik|381598|cadherin 11 pseudogene	AK009182|2610005L07Rik|381598|cadherin 11 pseudogene	AK160987|2610005L07Rik|381598|cadherin 11 pseudogene	AK131627|2610005L07Rik|381598|cadherin 11 pseudogene	AK035187|2610005L07Rik|381598|cadherin 11 pseudogene
mm9_v1_chr10_+_24589791_24589858	0.730898	CTCF.p2	NM_001166416|Med23|70208|mediator complex subunit 23	NM_027347|Med23|70208|mediator complex subunit 23	AK028545|Med23|70208|mediator complex subunit 23	AK042346|Med23|70208|mediator complex subunit 23	AF507918|Med23|70208|mediator complex subunit 23	BC050916|Med23|70208|mediator complex subunit 23	BC040398|Med23|70208|mediator complex subunit 23	AK129312|Med23|70208|mediator complex subunit 23
mm9_v1_chr4_-_45543623_45543714	0.702614	CTCF.p2	NM_001033306|Shb|230126|src homology 2 domain-containing transforming protein B
mm9_v1_chr1_+_173433608_173433701	0.700975	CTCF.p2	AK048243|Refbp2|56009|RNA and export factor binding protein 2	NM_019484|Refbp2|56009|RNA and export factor binding protein 2	BC099405|Refbp2|56009|RNA and export factor binding protein 2
mm9_v1_chr10_+_79256298_79256486	0.699496	CTCF.p2	AK082163|Palm|18483|paralemmin	NM_001161747|Palm|18483|paralemmin	NM_023128|Palm|18483|paralemmin	AK162411|Palm|18483|paralemmin	BC015297|Palm|18483|paralemmin	Y14771|Palm|18483|paralemmin	AK133733|Palm|18483|paralemmin	AK037044|Palm|18483|paralemmin
mm9_v1_chr12_-_27100112_27100136	0.695642	CTCF.p2	AF360998|Rnf144a|108089|ring finger protein 144A	NM_001081977|Rnf144a|108089|ring finger protein 144A	NM_080563|Rnf144a|108089|ring finger protein 144A
mm9_v1_chr10_+_127896244_127896376	0.692549	CTCF.p2	NM_001114096|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	NM_001114097|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	NM_198160|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	BC058720|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK089461|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK170530|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	AK146971|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	BC040363|Smarcc2|68094|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm9_v1_chr11_-_109159357_109159494	0.690659	CTCF.p2	BC129899|Rgs9|19739|regulator of G-protein signaling 9	BC129898|Rgs9|19739|regulator of G-protein signaling 9	AF011358|Rgs9|19739|regulator of G-protein signaling 9	AK138159|Rgs9|19739|regulator of G-protein signaling 9	AK085443|Rgs9|19739|regulator of G-protein signaling 9	AF125046|Rgs9|19739|regulator of G-protein signaling 9	AK164961|Rgs9|19739|regulator of G-protein signaling 9	NM_001165934|Rgs9|19739|regulator of G-protein signaling 9	NM_011268|Rgs9|19739|regulator of G-protein signaling 9
mm9_v1_chr17_-_35972880_35972916	0.686183	CTCF.p2	AK169398|Tubb5|22154|tubulin, beta 5
mm9_v1_chr4_+_125939622_125939671	0.686172	CTCF.p2	AK151747|Trappc3|27096|trafficking protein particle complex 3	BC003736|Trappc3|27096|trafficking protein particle complex 3	NM_013718|Trappc3|27096|trafficking protein particle complex 3	AF041433|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr12_-_36769054_36769127	0.674701	CTCF.p2	BC018317|Tspan13|66109|tetraspanin 13	NM_025359|Tspan13|66109|tetraspanin 13	AK158761|Tspan13|66109|tetraspanin 13	AK167979|Tspan13|66109|tetraspanin 13	AK012571|Tspan13|66109|tetraspanin 13	AK090217|Tspan13|66109|tetraspanin 13	AK090322|Tspan13|66109|tetraspanin 13	AK165768|Tspan13|66109|tetraspanin 13	AK167495|Tspan13|66109|tetraspanin 13
mm9_v1_chr2_-_152841107_152841162	0.672577	CTCF.p2	BC031699|Pdrg1|68559|p53 and DNA damage regulated 1	NM_178939|Pdrg1|68559|p53 and DNA damage regulated 1	AK003410|Pdrg1|68559|p53 and DNA damage regulated 1	AK145939|Pdrg1|68559|p53 and DNA damage regulated 1
mm9_v1_chr15_-_76648532_76648614	0.665099	CTCF.p2	AK173232|Arhgap39|223666|Rho GTPase activating protein 39	AK141623|Arhgap39|223666|Rho GTPase activating protein 39	BC060637|Arhgap39|223666|Rho GTPase activating protein 39	NM_001168288|Arhgap39|223666|Rho GTPase activating protein 39	NM_198420|Arhgap39|223666|Rho GTPase activating protein 39
mm9_v1_chr2_+_152495196_152495240	0.658701	CTCF.p2	NM_001159551|H13|14950|histocompatibility 13	NM_001159552|H13|14950|histocompatibility 13	NM_001159553|H13|14950|histocompatibility 13	NM_010376|H13|14950|histocompatibility 13	AJ345032|H13|14950|histocompatibility 13	BC056977|H13|14950|histocompatibility 13	DQ168449|H13|14950|histocompatibility 13	AK012600|H13|14950|histocompatibility 13	AK007664|H13|14950|histocompatibility 13	AK004690|H13|14950|histocompatibility 13	AK019877|H13|14950|histocompatibility 13	AK039008|H13|14950|histocompatibility 13	AK049101|H13|14950|histocompatibility 13	AK159176|H13|14950|histocompatibility 13	AK028109|H13|14950|histocompatibility 13	AF483214|H13|14950|histocompatibility 13	AK080966|H13|14950|histocompatibility 13	AK169922|H13|14950|histocompatibility 13
mm9_v1_chr9_+_107790512_107790620	0.657831	CTCF.p2	AK013387|Mon1a|72825|MON1 homolog A (yeast)	BC048852|Mon1a|72825|MON1 homolog A (yeast)	AK172624|Mon1a|72825|MON1 homolog A (yeast)	AK218443|Mon1a|72825|MON1 homolog A (yeast)
mm9_v1_chr5_-_67009992_67010044	0.646259	CTCF.p2	AK169959|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK153260|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2
mm9_v1_chr5_+_88994019_88994105	0.643378	CTCF.p2	AK154941|Rufy3|52822|RUN and FYVE domain containing 3	AK160820|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr8_+_86090622_86090714	0.633857	CTCF.p2	AK003300|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	NM_025843|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	AK002678|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC034787|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	BC056984|Ndufb7|66916|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7
mm9_v1_chr3_-_129763732_129763824	0.633381	CTCF.p2	BC046776|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)	NM_207209|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr12_-_17183330_17183422	0.632913	CTCF.p2	BC053089|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1	AK137367|Kcnf1|382571|potassium voltage-gated channel, subfamily F, member 1
mm9_v1_chr8_+_23303277_23303337	0.628072	CTCF.p2	AK161865|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK008946|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK150754|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK151035|Vps36|70160|vacuolar protein sorting 36 (yeast)	AK156241|Vps36|70160|vacuolar protein sorting 36 (yeast)	BC010811|Vps36|70160|vacuolar protein sorting 36 (yeast)	NM_027338|Vps36|70160|vacuolar protein sorting 36 (yeast)
mm9_v1_chr11_+_104092793_104092806	0.618969	CTCF.p2	AK147636|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr2_+_156546758_156546851	0.609699	CTCF.p2	AK089484|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK150554|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK156212|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK211649|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AF073935|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr11_+_116532973_116533009	0.597654	CTCF.p2	AK007675|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK013681|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK037979|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	BC055707|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene	AK088915|1810032O08Rik|66293|RIKEN cDNA 1810032O08 gene
mm9_v1_chr5_-_110698874_110698881	0.596256	CTCF.p2	AK049246|Pgam5|72542|phosphoglycerate mutase family member 5	AK169643|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr5_-_143026961_143027030	0.5938	CTCF.p2	AK052964|Radil|231858|Ras association and DIL domains	AK038570|Radil|231858|Ras association and DIL domains	AK163852|Radil|231858|Ras association and DIL domains	AK154169|Radil|231858|Ras association and DIL domains	BC056483|Radil|231858|Ras association and DIL domains	AK173277|Radil|231858|Ras association and DIL domains	AK162917|Radil|231858|Ras association and DIL domains	NM_178702|Radil|231858|Ras association and DIL domains
mm9_v1_chr9_-_50336742_50336819	0.590098	CTCF.p2	AF043225|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	BC029013|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	NM_011220|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	AK002614|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	AK146987|Pts|19286|6-pyruvoyl-tetrahydropterin synthase	AK153959|Pts|19286|6-pyruvoyl-tetrahydropterin synthase
mm9_v1_chr2_+_151319915_151320083	0.587326	CTCF.p2	AK039136|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK137088|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK013024|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC050936|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	NM_198326|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	BC106101|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)	AK181317|Nsfl1c|386649|NSFL1 (p97) cofactor (p47)
mm9_v1_chr4_-_148681792_148681843	0.587174	CTCF.p2	AK036129|Kif1b|16561|kinesin family member 1B	NM_008441|Kif1b|16561|kinesin family member 1B	NM_207682|Kif1b|16561|kinesin family member 1B	AK134946|Kif1b|16561|kinesin family member 1B
mm9_v1_chr19_+_7492081_7492131	0.580196	CTCF.p2	NM_175381|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr5_+_145529646_145529663	0.579572	CTCF.p2	NM_001081362|Trrap|100683|transformation/transcription domain-associated protein	AK147241|Trrap|100683|transformation/transcription domain-associated protein
mm9_v1_chr3_-_129763648_129763693	0.577418	CTCF.p2	BC057355|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr3_-_88964115_88964123	0.573796	CTCF.p2	AK082719|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3
mm9_v1_chr12_-_81861527_81861701	0.573101	CTCF.p2	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr5_-_117565868_117565988	0.571885	CTCF.p2	BC062176|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK010274|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK150633|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AF469109|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK043652|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK138947|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	BC055764|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK045475|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)
mm9_v1_chr2_-_32208737_32208880	0.571113	CTCF.p2	L31395|Dnm1|13429|dynamin 1	BC058623|Dnm1|13429|dynamin 1	L31397|Dnm1|13429|dynamin 1	AK220483|Dnm1|13429|dynamin 1	AK144142|Dnm1|13429|dynamin 1	BC034679|Dnm1|13429|dynamin 1	AK011651|Dnm1|13429|dynamin 1	NM_010065|Dnm1|13429|dynamin 1
mm9_v1_chr2_+_97306600_97306623	0.566181	CTCF.p2	
mm9_v1_chr3_+_19794876_19794911	0.562178	CTCF.p2	BC023403|4632415L05Rik|70808|RRS1 ribosome biogenesis regulator homolog pseudogene	BC037267|4632415L05Rik|70808|RRS1 ribosome biogenesis regulator homolog pseudogene	AK014580|4632415L05Rik|70808|RRS1 ribosome biogenesis regulator homolog pseudogene
mm9_v1_chr2_+_170336930_170336945	0.561568	CTCF.p2	AK007940|Pfdn4|109054|prefoldin 4	BC048510|Pfdn4|109054|prefoldin 4
mm9_v1_chr7_-_7252221_7252267	0.553066	CTCF.p2	BC110668|Clcn4-2|12727|chloride channel 4-2	NM_011334|Clcn4-2|12727|chloride channel 4-2	BC089497|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr13_-_45097365_45097527	0.549166	CTCF.p2	BC058574|Dtnbp1|94245|dystrobrevin binding protein 1	BC018350|Dtnbp1|94245|dystrobrevin binding protein 1	AJ404859|Dtnbp1|94245|dystrobrevin binding protein 1	AK150306|Dtnbp1|94245|dystrobrevin binding protein 1	NM_025772|Dtnbp1|94245|dystrobrevin binding protein 1	BC048682|Dtnbp1|94245|dystrobrevin binding protein 1
mm9_v1_chr9_+_110235804_110235881	0.547666	CTCF.p2	AK150275|Scap|235623|SREBF chaperone	AK152478|Scap|235623|SREBF chaperone	AK153330|Scap|235623|SREBF chaperone	BC072633|Scap|235623|SREBF chaperone	BC070437|Scap|235623|SREBF chaperone	AK146658|Scap|235623|SREBF chaperone
mm9_v1_chr17_+_56752805_56752873	0.544221	CTCF.p2	NM_018730|Rpl36|54217|ribosomal protein L36	AK003115|Rpl36|54217|ribosomal protein L36	BC086914|Rpl36|54217|ribosomal protein L36	BC021595|Rpl36|54217|ribosomal protein L36	X75895|Rpl36|54217|ribosomal protein L36
mm9_v1_chr1_-_173957316_173957398	0.542603	CTCF.p2	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr17_-_35089399_35089425	0.541091	CTCF.p2	BC058123|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK003073|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK004150|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene	AK002372|1110038B12Rik|68763|RIKEN cDNA 1110038B12 gene
mm9_v1_chr5_-_140807819_140807855	0.540623	CTCF.p2	BC064776|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK077929|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK145808|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK017300|Ftsj2|68017|FtsJ homolog 2 (E. coli)	AK009656|Ftsj2|68017|FtsJ homolog 2 (E. coli)	NM_026510|Ftsj2|68017|FtsJ homolog 2 (E. coli)
mm9_v1_chr11_+_69446453_69446577	0.538941	CTCF.p2	AK172042|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	BC062971|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	NM_011814|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	AK154243|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	BC057007|Fxr2|23879|fragile X mental retardation, autosomal homolog 2
mm9_v1_chr6_+_124881376_124881406	0.527036	CTCF.p2	AK171220|Mlf2|30853|myeloid leukemia factor 2	NM_001170341|Mlf2|30853|myeloid leukemia factor 2	NM_145385|Mlf2|30853|myeloid leukemia factor 2
mm9_v1_chr1_+_193399633_193399665	0.504162	CTCF.p2	AK052103|Ints7|77065|integrator complex subunit 7	AK085336|Ints7|77065|integrator complex subunit 7	AK034856|Ints7|77065|integrator complex subunit 7	BC054120|Ints7|77065|integrator complex subunit 7
mm9_v1_chr8_+_93352767_93352776	0.501619	CTCF.p2	AK020244|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr11_+_78640059_78640096	0.500438	CTCF.p2	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr4_+_125939573_125939621	0.499639	CTCF.p2	AK168518|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr14_-_47407948_47408042	0.498603	CTCF.p2	AK154479|Cnih|12793|cornichon homolog (Drosophila)	AK152432|Cnih|12793|cornichon homolog (Drosophila)	AK168154|Cnih|12793|cornichon homolog (Drosophila)	AK011200|Cnih|12793|cornichon homolog (Drosophila)	BC034868|Cnih|12793|cornichon homolog (Drosophila)	AK002293|Cnih|12793|cornichon homolog (Drosophila)	AF022811|Cnih|12793|cornichon homolog (Drosophila)	NM_009919|Cnih|12793|cornichon homolog (Drosophila)
mm9_v1_chr4_+_41702350_41702404	0.496751	CTCF.p2	M96265|Galt|14430|galactose-1-phosphate uridyl transferase	AK088379|Galt|14430|galactose-1-phosphate uridyl transferase	BC010985|Galt|14430|galactose-1-phosphate uridyl transferase
mm9_v1_chr16_+_96366980_96367038	0.495327	CTCF.p2	AK084688|Wrb|71446|tryptophan rich basic protein	AK172079|Wrb|71446|tryptophan rich basic protein	BC031769|Wrb|71446|tryptophan rich basic protein	NM_207301|Wrb|71446|tryptophan rich basic protein	AK021091|Wrb|71446|tryptophan rich basic protein
mm9_v1_chr1_-_135506798_135506877	0.494708	CTCF.p2	BC055765|Snrpe|20643|small nuclear ribonucleoprotein E	BC051207|Snrpe|20643|small nuclear ribonucleoprotein E	BC008262|Snrpe|20643|small nuclear ribonucleoprotein E	AK019462|Snrpe|20643|small nuclear ribonucleoprotein E	NM_009227|Snrpe|20643|small nuclear ribonucleoprotein E
mm9_v1_chr17_+_43153490_43153503	0.491976	CTCF.p2	AK043823|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	NM_178589|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr5_-_137943570_137943661	0.490446	CTCF.p2	BC010780|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	AK002782|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	NM_028753|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)	AK162268|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)
mm9_v1_chr15_-_97077552_97077717	0.488851	CTCF.p2	BC095990|Amigo2|105827|adhesion molecule with Ig like domain 2	AK030848|Amigo2|105827|adhesion molecule with Ig like domain 2	AK038783|Amigo2|105827|adhesion molecule with Ig like domain 2	NM_001164563|Amigo2|105827|adhesion molecule with Ig like domain 2	NM_001164602|Amigo2|105827|adhesion molecule with Ig like domain 2	NM_178114|Amigo2|105827|adhesion molecule with Ig like domain 2
mm9_v1_chr3_-_154260022_154260061	0.487196	CTCF.p2	BC087879|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	BC086686|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	BC141040|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	AK034820|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	AK030344|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	NM_001168358|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	NM_172474|Tyw3|209584|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
mm9_v1_chr11_+_94491055_94491166	0.480816	CTCF.p2	AK159374|Lrrc59|98238|leucine rich repeat containing 59	AK159552|Lrrc59|98238|leucine rich repeat containing 59	AK166576|Lrrc59|98238|leucine rich repeat containing 59	AK053450|Lrrc59|98238|leucine rich repeat containing 59	BC006877|Lrrc59|98238|leucine rich repeat containing 59	NM_133807|Lrrc59|98238|leucine rich repeat containing 59	AK169390|Lrrc59|98238|leucine rich repeat containing 59	BC066172|Lrrc59|98238|leucine rich repeat containing 59	AK167604|Lrrc59|98238|leucine rich repeat containing 59	AK169250|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr2_-_165981085_165981115	0.479864	CTCF.p2	AK165183|Sulf2|72043|sulfatase 2	AK028874|Sulf2|72043|sulfatase 2	AK008108|Sulf2|72043|sulfatase 2	AK036685|Sulf2|72043|sulfatase 2
mm9_v1_chr17_-_24861295_24861399	0.468021	CTCF.p2	AK002517|Ndufb10|68342|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	BC043013|Ndufb10|68342|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	BC031664|Ndufb10|68342|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	NM_026684|Ndufb10|68342|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	AK151404|Ndufb10|68342|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10
mm9_v1_chr11_+_104092789_104092792	0.467916	CTCF.p2	AK038797|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr9_-_102256709_102256791	0.463386	CTCF.p2	AK036148|Ephb1|270190|Eph receptor B1
mm9_v1_chr14_+_73909826_73909861	0.462145	CTCF.p2	AK145636|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK078288|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK010270|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	AK010686|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	BC024950|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)	NM_026119|Med4|67381|mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)
mm9_v1_chr10_+_74429876_74429984	0.460778	CTCF.p2	NM_010311|Gnaz|14687|guanine nucleotide binding protein, alpha z subunit	AK080716|Gnaz|14687|guanine nucleotide binding protein, alpha z subunit
mm9_v1_chr18_+_85020742_85020795	0.457691	CTCF.p2	AK132102|Cyb5|109672|cytochrome b-5
mm9_v1_chr18_-_38094995_38095137	0.454954	CTCF.p2	AK140734|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK220466|Diap1|13367|diaphanous homolog 1 (Drosophila)	NM_007858|Diap1|13367|diaphanous homolog 1 (Drosophila)	U96963|Diap1|13367|diaphanous homolog 1 (Drosophila)	BC070412|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK012707|Diap1|13367|diaphanous homolog 1 (Drosophila)
mm9_v1_chr3_+_145600974_145601015	0.450206	CTCF.p2	BC049577|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK010378|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	BC115465|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	NM_025555|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK019404|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK077565|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene
mm9_v1_chr2_-_114001033_114001080	0.443511	CTCF.p2	AK151716|Aqr|11834|aquarius	BC042479|Aqr|11834|aquarius	AK145547|Aqr|11834|aquarius	AK077886|Aqr|11834|aquarius	AK122310|Aqr|11834|aquarius	AK016322|Aqr|11834|aquarius	AK020468|Aqr|11834|aquarius	NM_009702|Aqr|11834|aquarius
mm9_v1_chr5_+_150480804_150480876	0.441768	CTCF.p2	NM_001081204|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK089440|B3galtl|381694|beta 1,3-galactosyltransferase-like	AK145082|B3galtl|381694|beta 1,3-galactosyltransferase-like	AB253762|B3galtl|381694|beta 1,3-galactosyltransferase-like
mm9_v1_chr2_+_3035692_3035956	0.441073	CTCF.p2	BC138175|Fam171a1|269233|family with sequence similarity 171, member A1	BC145171|Fam171a1|269233|family with sequence similarity 171, member A1	AK077831|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr10_-_126467848_126467902	0.439295	CTCF.p2	BC034286|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK020437|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK169164|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK018591|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK141183|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK012240|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK171656|Tsfm|66399|Ts translation elongation factor, mitochondrial	AK172112|Tsfm|66399|Ts translation elongation factor, mitochondrial	BC057904|Tsfm|66399|Ts translation elongation factor, mitochondrial	NM_025537|Tsfm|66399|Ts translation elongation factor, mitochondrial
mm9_v1_chr2_-_26264694_26264752	0.431535	CTCF.p2	AK170786|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AF226683|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC057566|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC080295|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	BC052717|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	NM_033134|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK170812|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK080075|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK047245|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK158135|Inpp5e|64436|inositol polyphosphate-5-phosphatase E	AK154097|Inpp5e|64436|inositol polyphosphate-5-phosphatase E
mm9_v1_chr17_+_47832121_47832155	0.428447	CTCF.p2	BC014819|Frs3|107971|fibroblast growth factor receptor substrate 3	NM_144939|Frs3|107971|fibroblast growth factor receptor substrate 3
mm9_v1_chr14_+_66915903_66915912	0.425927	CTCF.p2	AK031803|Trim35|66854|tripartite motif-containing 35	BC049105|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr16_+_31428887_31428913	0.414397	CTCF.p2	AK137955|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	BC096457|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr16_-_20426357_20426468	0.411059	CTCF.p2	BC042581|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	AB019003|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	BC090629|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	BC061132|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	NM_013790|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	NM_176839|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm9_v1_chr2_-_22895682_22895796	0.409262	CTCF.p2	AF420251|Abi1|11308|abl-interactor 1	AK167744|Abi1|11308|abl-interactor 1	BC004657|Abi1|11308|abl-interactor 1	AK167568|Abi1|11308|abl-interactor 1	AK167328|Abi1|11308|abl-interactor 1	AK165924|Abi1|11308|abl-interactor 1	AK151363|Abi1|11308|abl-interactor 1	NM_001077190|Abi1|11308|abl-interactor 1	NM_001077192|Abi1|11308|abl-interactor 1	NM_001077193|Abi1|11308|abl-interactor 1	NM_007380|Abi1|11308|abl-interactor 1	NM_145994|Abi1|11308|abl-interactor 1
mm9_v1_chr14_-_58617936_58618123	0.404764	CTCF.p2	BC031373|Efha1|68514|EF hand domain family A1	AK167296|Efha1|68514|EF hand domain family A1	AK031692|Efha1|68514|EF hand domain family A1	AK049658|Efha1|68514|EF hand domain family A1	BC031172|Efha1|68514|EF hand domain family A1	NM_028643|Efha1|68514|EF hand domain family A1	AK014778|Efha1|68514|EF hand domain family A1
mm9_v1_chr9_-_57493393_57493475	0.404241	CTCF.p2	AK136876|Csk|12988|c-src tyrosine kinase
mm9_v1_chr11_+_104092749_104092776	0.403748	CTCF.p2	M18775|Mapt|17762|microtubule-associated protein tau	M18776|Mapt|17762|microtubule-associated protein tau	NM_001038609|Mapt|17762|microtubule-associated protein tau	NM_010838|Mapt|17762|microtubule-associated protein tau	AK078167|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr16_-_91044623_91044646	0.402809	CTCF.p2	NM_026110|Gcfc1|67367|GC-rich sequence DNA-binding factor 1
mm9_v1_chr11_-_102308910_102308956	0.399831	CTCF.p2	BC025575|Fam171a2|217219|family with sequence similarity 171, member A2	BC064455|Fam171a2|217219|family with sequence similarity 171, member A2
mm9_v1_chr11_-_70796471_70796535	0.399694	CTCF.p2	AK010746|C1qbp|12261|complement component 1, q subcomponent binding protein	BC038075|C1qbp|12261|complement component 1, q subcomponent binding protein	AK169764|C1qbp|12261|complement component 1, q subcomponent binding protein	AK011868|C1qbp|12261|complement component 1, q subcomponent binding protein	NM_007573|C1qbp|12261|complement component 1, q subcomponent binding protein
mm9_v1_chr5_+_116009516_116009532	0.398489	CTCF.p2	AK012606|Rplp0|11837|ribosomal protein, large, P0	AK029816|Rplp0|11837|ribosomal protein, large, P0	AK161683|Rplp0|11837|ribosomal protein, large, P0	BC087887|Rplp0|11837|ribosomal protein, large, P0	BC089496|Rplp0|11837|ribosomal protein, large, P0	AK081678|Rplp0|11837|ribosomal protein, large, P0	AK002315|Rplp0|11837|ribosomal protein, large, P0	AK009767|Rplp0|11837|ribosomal protein, large, P0	AK010267|Rplp0|11837|ribosomal protein, large, P0	AK150448|Rplp0|11837|ribosomal protein, large, P0	AK159358|Rplp0|11837|ribosomal protein, large, P0	AK160541|Rplp0|11837|ribosomal protein, large, P0	AK166728|Rplp0|11837|ribosomal protein, large, P0	X15267|Rplp0|11837|ribosomal protein, large, P0	AK167240|Rplp0|11837|ribosomal protein, large, P0	BC003833|Rplp0|11837|ribosomal protein, large, P0
mm9_v1_chr2_+_93027704_93027759	0.3964	CTCF.p2	AK142316|Trp53i11|277414|transformation related protein 53 inducible protein 11	BC098206|Trp53i11|277414|transformation related protein 53 inducible protein 11	NM_001025246|Trp53i11|277414|transformation related protein 53 inducible protein 11
mm9_v1_chr5_-_110698814_110698873	0.392567	CTCF.p2	BC052179|Pgam5|72542|phosphoglycerate mutase family member 5	BC021317|Pgam5|72542|phosphoglycerate mutase family member 5	AK162266|Pgam5|72542|phosphoglycerate mutase family member 5
mm9_v1_chr1_-_173177238_173177241	0.388968	CTCF.p2	AK167016|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr6_-_137118197_137118219	0.383309	CTCF.p2	AK028025|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	AK133734|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chrX_-_102265380_102265463	0.382505	CTCF.p2	AK153718|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC019699|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK017459|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085485|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK085098|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084980|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	BC055463|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK080296|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK043766|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK047017|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK084653|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK144934|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK157237|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene	AK164650|5530601H04Rik|71445|RIKEN cDNA 5530601H04 gene
mm9_v1_chr14_+_66915914_66915996	0.375282	CTCF.p2	AK129288|Trim35|66854|tripartite motif-containing 35	AK163749|Trim35|66854|tripartite motif-containing 35	AB060155|Trim35|66854|tripartite motif-containing 35	AK179232|Trim35|66854|tripartite motif-containing 35	BC053494|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr11_-_3814666_3814666	0.374018	CTCF.p2	AK039786|Slc35e4|103710|solute carrier family 35, member E4	NM_153142|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr4_+_151699954_151699986	0.372286	CTCF.p2	BC007139|Rpl22|19934|ribosomal protein L22	AK003022|Rpl22|19934|ribosomal protein L22	AK169731|Rpl22|19934|ribosomal protein L22	AK009094|Rpl22|19934|ribosomal protein L22	D17653|Rpl22|19934|ribosomal protein L22	AK168353|Rpl22|19934|ribosomal protein L22	AK169078|Rpl22|19934|ribosomal protein L22	BC021344|Rpl22|19934|ribosomal protein L22	NM_009079|Rpl22|19934|ribosomal protein L22
mm9_v1_chr4_+_151413427_151413471	0.370201	CTCF.p2	AK047599|Nol9|74035|nucleolar protein 9	AK164493|Nol9|74035|nucleolar protein 9	NM_001159599|Nol9|74035|nucleolar protein 9	NM_028727|Nol9|74035|nucleolar protein 9	BC024877|Nol9|74035|nucleolar protein 9	AK172043|Nol9|74035|nucleolar protein 9	AK014568|Nol9|74035|nucleolar protein 9	AK050948|Nol9|74035|nucleolar protein 9	AK157956|Nol9|74035|nucleolar protein 9	BC125432|Nol9|74035|nucleolar protein 9	BC132099|Nol9|74035|nucleolar protein 9	AK157398|Nol9|74035|nucleolar protein 9	AK079935|Nol9|74035|nucleolar protein 9	AK046761|Nol9|74035|nucleolar protein 9	BC096599|Nol9|74035|nucleolar protein 9	AK042581|Nol9|74035|nucleolar protein 9	BC051109|Nol9|74035|nucleolar protein 9
mm9_v1_chr8_-_42502362_42502487	0.36764	CTCF.p2	AK079229|Frg1|14300|FSHD region gene 1	AK077107|Frg1|14300|FSHD region gene 1	BC002027|Frg1|14300|FSHD region gene 1	U62105|Frg1|14300|FSHD region gene 1	NM_013522|Frg1|14300|FSHD region gene 1
mm9_v1_chr8_+_19784580_19784661	0.367591	CTCF.p2	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr11_+_88835235_88835270	0.366523	CTCF.p2	NM_016706|Coil|12812|coilin	AK146366|Coil|12812|coilin	AF208663|Coil|12812|coilin
mm9_v1_chr18_+_42671147_42671160	0.359611	CTCF.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr18_-_34166572_34166697	0.357894	CTCF.p2	BC007166|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a	BC013557|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a	AK161182|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr2_-_33286793_33286890	0.357231	CTCF.p2	NM_001085507|Zbtb34|241311|zinc finger and BTB domain containing 34
mm9_v1_chr8_+_109555200_109555247	0.356679	CTCF.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr4_+_43455122_43455148	0.355848	CTCF.p2	BC099699|Tesk1|21754|testis specific protein kinase 1	NM_011571|Tesk1|21754|testis specific protein kinase 1
mm9_v1_chr2_+_121239637_121239649	0.351624	CTCF.p2	NM_007952|Pdia3|14827|protein disulfide isomerase associated 3
mm9_v1_chr15_+_100592177_100592343	0.351579	CTCF.p2	AK034237|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	NM_021530|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK083945|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK050563|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK039404|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	BC030388|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AF224508|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK173014|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8
mm9_v1_chr3_-_96398053_96398112	0.349939	CTCF.p2	BC027083|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like	AK008069|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like	AK168976|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like	NM_027241|Polr3gl|69870|polymerase (RNA) III (DNA directed) polypeptide G like
mm9_v1_chr11_+_83286635_83286647	0.349587	CTCF.p2	BC137591|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK146331|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr4_+_43394941_43394946	0.349335	CTCF.p2	BC050780|Rusc2|100213|RUN and SH3 domain containing 2
mm9_v1_chrX_-_137077639_137077729	0.348097	CTCF.p2	BC028813|Tsc22d3|14605|TSC22 domain family, member 3	AF201288|Tsc22d3|14605|TSC22 domain family, member 3	AF024519|Tsc22d3|14605|TSC22 domain family, member 3	AK083389|Tsc22d3|14605|TSC22 domain family, member 3	NM_010286|Tsc22d3|14605|TSC22 domain family, member 3	AK144196|Tsc22d3|14605|TSC22 domain family, member 3
mm9_v1_chr9_-_44042043_44042131	0.346138	CTCF.p2	BC125285|Cbl|12402|Casitas B-lineage lymphoma	X57111|Cbl|12402|Casitas B-lineage lymphoma	AK153915|Cbl|12402|Casitas B-lineage lymphoma	AK163907|Cbl|12402|Casitas B-lineage lymphoma	NM_007619|Cbl|12402|Casitas B-lineage lymphoma	AK029826|Cbl|12402|Casitas B-lineage lymphoma
mm9_v1_chr19_-_4012698_4012725	0.344864	CTCF.p2	AK075692|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK005021|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	BC014818|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	NM_133666|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm9_v1_chr19_-_6141100_6141219	0.343823	CTCF.p2	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr12_+_25659777_25659836	0.342407	CTCF.p2	AK021172|Kidins220|77480|kinase D-interacting substrate 220	NM_001081378|Kidins220|77480|kinase D-interacting substrate 220	BC157898|Kidins220|77480|kinase D-interacting substrate 220
mm9_v1_chr2_-_121181055_121181098	0.341897	CTCF.p2	AK160847|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr13_-_54850954_54851046	0.33949	CTCF.p2	BC057044|Gprin1|26913|G protein-regulated inducer of neurite outgrowth 1	AK138306|Gprin1|26913|G protein-regulated inducer of neurite outgrowth 1	NM_012014|Gprin1|26913|G protein-regulated inducer of neurite outgrowth 1	AK144210|Gprin1|26913|G protein-regulated inducer of neurite outgrowth 1
mm9_v1_chr9_-_102256962_102257026	0.338569	CTCF.p2	BC057301|Ephb1|270190|Eph receptor B1	AK135018|Ephb1|270190|Eph receptor B1	AK033966|Ephb1|270190|Eph receptor B1	AK036211|Ephb1|270190|Eph receptor B1	AK082061|Ephb1|270190|Eph receptor B1	AK039530|Ephb1|270190|Eph receptor B1	NM_001168296|Ephb1|270190|Eph receptor B1	NM_173447|Ephb1|270190|Eph receptor B1
mm9_v1_chr4_+_124762378_124762419	0.337302	CTCF.p2	NM_027310|Meaf6|70088|MYST/Esa1-associated factor 6	AK009177|Meaf6|70088|MYST/Esa1-associated factor 6	AK012867|Meaf6|70088|MYST/Esa1-associated factor 6	BC108404|Meaf6|70088|MYST/Esa1-associated factor 6	BC061024|Meaf6|70088|MYST/Esa1-associated factor 6
mm9_v1_chr1_-_173177236_173177237	0.336053	CTCF.p2	AK150431|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2	AK165426|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr8_-_87461220_87461246	0.333019	CTCF.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr14_+_66915867_66915901	0.332385	CTCF.p2	BC145783|Trim35|66854|tripartite motif-containing 35	BC145809|Trim35|66854|tripartite motif-containing 35	AF145374|Trim35|66854|tripartite motif-containing 35	AK032635|Trim35|66854|tripartite motif-containing 35	AK075877|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr13_-_54666552_54666754	0.332322	CTCF.p2	AK217762|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK173126|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC039775|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK014792|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK028697|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK016176|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK167616|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC054417|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC043040|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK004845|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK159945|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK145025|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK169399|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	BC033445|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	NM_133797|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene
mm9_v1_chr11_+_62389048_62389081	0.331522	CTCF.p2	AK134052|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2
mm9_v1_chr2_+_155207542_155207579	0.330133	CTCF.p2	AK170132|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr9_+_107790457_107790481	0.327088	CTCF.p2	NM_028369|Mon1a|72825|MON1 homolog A (yeast)	BC058717|Mon1a|72825|MON1 homolog A (yeast)
mm9_v1_chr2_+_174109820_174109853	0.325983	CTCF.p2	AK039035|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_019690|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_022000|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF107848|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK161197|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF175305|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AJ010163|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr11_-_120442889_120442950	0.325527	CTCF.p2	AK170553|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK143516|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK165241|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK170718|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	NM_133796|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr8_-_109948891_109948958	0.324495	CTCF.p2	BC054835|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK054034|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK075755|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC117992|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC117993|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	NM_026277|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC034900|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK021194|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	BC103793|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)	AK165521|Nob1|67619|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)
mm9_v1_chr18_+_38456315_38456361	0.32282	CTCF.p2	AK009783|Rnf14|56736|ring finger protein 14	AK010162|Rnf14|56736|ring finger protein 14	BC094250|Rnf14|56736|ring finger protein 14	AF249667|Rnf14|56736|ring finger protein 14	AK038986|Rnf14|56736|ring finger protein 14	BC054841|Rnf14|56736|ring finger protein 14
mm9_v1_chr5_+_124357243_124357339	0.322816	CTCF.p2	AK135127|Denr|68184|density-regulated protein	AK017647|Denr|68184|density-regulated protein	AK010394|Denr|68184|density-regulated protein	AK018762|Denr|68184|density-regulated protein	AK083852|Denr|68184|density-regulated protein	NM_026603|Denr|68184|density-regulated protein	BC025143|Denr|68184|density-regulated protein	BC043922|Denr|68184|density-regulated protein
mm9_v1_chr10_-_14425271_14425365	0.320909	CTCF.p2	AK009227|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	BC026752|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	AK002611|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	NM_025418|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	AK003213|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)	AK004323|Vta1|66201|Vps20-associated 1 homolog (S. cerevisiae)
mm9_v1_chr15_-_76342209_76342361	0.317935	CTCF.p2	AB057816|Dgat1|13350|diacylglycerol O-acyltransferase 1	BC003717|Dgat1|13350|diacylglycerol O-acyltransferase 1	NM_010046|Dgat1|13350|diacylglycerol O-acyltransferase 1
mm9_v1_chr5_-_140251591_140251631	0.315275	CTCF.p2	AB257854|Ints1|68510|integrator complex subunit 1	BC063266|Ints1|68510|integrator complex subunit 1	AK155838|Ints1|68510|integrator complex subunit 1	NM_026748|Ints1|68510|integrator complex subunit 1
mm9_v1_chr18_+_42671163_42671217	0.311294	CTCF.p2	AK076993|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK168434|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AB023485|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC040284|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC039185|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC016542|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr10_+_126703317_126703496	0.311251	CTCF.p2	NM_001190453|Dctn2|69654|dynactin 2	NM_001190454|Dctn2|69654|dynactin 2	NM_027151|Dctn2|69654|dynactin 2	AK081785|Dctn2|69654|dynactin 2	AK054390|Dctn2|69654|dynactin 2	AK164021|Dctn2|69654|dynactin 2	AK144464|Dctn2|69654|dynactin 2	AK144505|Dctn2|69654|dynactin 2	BC004613|Dctn2|69654|dynactin 2
mm9_v1_chr11_+_104092809_104092902	0.309993	CTCF.p2	BC014748|Mapt|17762|microtubule-associated protein tau	U12914|Mapt|17762|microtubule-associated protein tau	U12915|Mapt|17762|microtubule-associated protein tau	U12916|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr6_+_85865746_85865786	0.308335	CTCF.p2	BC024858|Tprkb|69786|Tp53rk binding protein	AK188541|Tprkb|69786|Tp53rk binding protein
mm9_v1_chr5_-_140212063_140212302	0.307915	CTCF.p2	AK220308|Micall2|231830|MICAL-like 2	AK165558|Micall2|231830|MICAL-like 2	AB182579|Micall2|231830|MICAL-like 2	AK044547|Micall2|231830|MICAL-like 2	AK085948|Micall2|231830|MICAL-like 2	AK164043|Micall2|231830|MICAL-like 2	AK151086|Micall2|231830|MICAL-like 2	NM_174850|Micall2|231830|MICAL-like 2
mm9_v1_chr3_-_129763586_129763646	0.307784	CTCF.p2	BC046556|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr11_+_50038815_50038936	0.307246	CTCF.p2	AK155336|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B	NM_145926|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B
mm9_v1_chr1_-_53409415_53409595	0.304179	CTCF.p2	BC013617|Asnsd1|70396|asparagine synthetase domain containing 1	AK207754|Asnsd1|70396|asparagine synthetase domain containing 1	AK214374|Asnsd1|70396|asparagine synthetase domain containing 1	AK209578|Asnsd1|70396|asparagine synthetase domain containing 1	AK076793|Asnsd1|70396|asparagine synthetase domain containing 1	AK008875|Asnsd1|70396|asparagine synthetase domain containing 1	AK034746|Asnsd1|70396|asparagine synthetase domain containing 1	AK154984|Asnsd1|70396|asparagine synthetase domain containing 1	AK170510|Asnsd1|70396|asparagine synthetase domain containing 1	AK050045|Asnsd1|70396|asparagine synthetase domain containing 1	AK155030|Asnsd1|70396|asparagine synthetase domain containing 1	AK168103|Asnsd1|70396|asparagine synthetase domain containing 1	AK049194|Asnsd1|70396|asparagine synthetase domain containing 1	NM_133728|Asnsd1|70396|asparagine synthetase domain containing 1	AK031295|Asnsd1|70396|asparagine synthetase domain containing 1	AK168534|Asnsd1|70396|asparagine synthetase domain containing 1
mm9_v1_chr15_+_100299408_100299504	0.303696	CTCF.p2	NM_134093|Letmd1|68614|LETM1 domain containing 1	AK158718|Letmd1|68614|LETM1 domain containing 1
mm9_v1_chr5_-_67009869_67009948	0.301665	CTCF.p2	BC076587|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK169495|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK004792|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	NM_009686|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK167649|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2	AK032770|Apbb2|11787|amyloid beta (A4) precursor protein-binding, family B, member 2
mm9_v1_chr11_+_116780161_116780176	0.301515	CTCF.p2	BC063084|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	BC094604|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B	NM_172948|Mgat5b|268510|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm9_v1_chr4_-_131767968_131768170	0.300835	CTCF.p2	AK083882|Ythdf2|213541|YTH domain family 2	BC028994|Ythdf2|213541|YTH domain family 2	BC014797|Ythdf2|213541|YTH domain family 2	AK150350|Ythdf2|213541|YTH domain family 2	AK150669|Ythdf2|213541|YTH domain family 2	AK151392|Ythdf2|213541|YTH domain family 2	AK151862|Ythdf2|213541|YTH domain family 2	AK159548|Ythdf2|213541|YTH domain family 2	AK031616|Ythdf2|213541|YTH domain family 2	AK144209|Ythdf2|213541|YTH domain family 2	AK034655|Ythdf2|213541|YTH domain family 2	NM_145393|Ythdf2|213541|YTH domain family 2
mm9_v1_chr2_+_117075473_117075485	0.297663	CTCF.p2	AK019190|Fam98b|68215|family with sequence similarity 98, member B	AK019253|Fam98b|68215|family with sequence similarity 98, member B	AK039305|Fam98b|68215|family with sequence similarity 98, member B	NM_026620|Fam98b|68215|family with sequence similarity 98, member B	BC048087|Fam98b|68215|family with sequence similarity 98, member B
mm9_v1_chr11_+_49944855_49944942	0.295862	CTCF.p2	NM_029745|Tbc1d9b|76795|TBC1 domain family, member 9B	BC062928|Tbc1d9b|76795|TBC1 domain family, member 9B	AK166472|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065080|Tbc1d9b|76795|TBC1 domain family, member 9B	AK035457|Tbc1d9b|76795|TBC1 domain family, member 9B	AK147964|Tbc1d9b|76795|TBC1 domain family, member 9B	AK049999|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065130|Tbc1d9b|76795|TBC1 domain family, member 9B	AK172999|Tbc1d9b|76795|TBC1 domain family, member 9B
mm9_v1_chr11_-_120239930_120240089	0.295486	CTCF.p2	BC034203|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK009114|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK148234|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK147900|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK165631|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK082976|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	NM_027980|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene
mm9_v1_chr8_+_13785611_13785668	0.294922	CTCF.p2	AK020823|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC116988|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC119035|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	NM_025924|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK033239|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK011127|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK166277|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK016053|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK145471|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)
mm9_v1_chr12_+_9036802_9036858	0.29372	CTCF.p2	AK078146|Ttc32|75516|tetratricopeptide repeat domain 32	NM_029321|Ttc32|75516|tetratricopeptide repeat domain 32	AK005950|Ttc32|75516|tetratricopeptide repeat domain 32	BC119273|Ttc32|75516|tetratricopeptide repeat domain 32	AK144458|Ttc32|75516|tetratricopeptide repeat domain 32
mm9_v1_chr10_+_120471059_120471111	0.293466	CTCF.p2	AK077698|Wif1|24117|Wnt inhibitory factor 1	AK142443|Wif1|24117|Wnt inhibitory factor 1	AK158359|Wif1|24117|Wnt inhibitory factor 1	NM_011915|Wif1|24117|Wnt inhibitory factor 1
mm9_v1_chr7_-_20334814_20334864	0.289486	CTCF.p2	BC009088|Pvrl2|19294|poliovirus receptor-related 2	BC046770|Pvrl2|19294|poliovirus receptor-related 2	AK157513|Pvrl2|19294|poliovirus receptor-related 2	AK075815|Pvrl2|19294|poliovirus receptor-related 2
mm9_v1_chr9_-_108962219_108962241	0.287404	CTCF.p2	AF319574|Trex1|22040|three prime repair exonuclease 1	AF151106|Trex1|22040|three prime repair exonuclease 1	NM_011637|Trex1|22040|three prime repair exonuclease 1	BC011133|Trex1|22040|three prime repair exonuclease 1
mm9_v1_chr12_-_114238815_114238927	0.287262	CTCF.p2	NM_028193|Brf1|72308|BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
mm9_v1_chr19_+_23833310_23833547	0.286344	CTCF.p2	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr8_+_73895190_73895211	0.284092	CTCF.p2	AK163762|Ocel1|77090|occludin/ELL domain containing 1	NM_029865|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr1_+_120218417_120218424	0.281923	CTCF.p2	NM_026472|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK077770|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chr9_-_45714409_45714473	0.278544	CTCF.p2	BC094247|Rnf214|235315|ring finger protein 214	AK033867|Rnf214|235315|ring finger protein 214
mm9_v1_chr18_+_42671130_42671146	0.277013	CTCF.p2	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr5_-_139060952_139060970	0.276	CTCF.p2	AB024005|Zfp68|24135|zinc finger protein 68	BC018171|Zfp68|24135|zinc finger protein 68	AK013868|Zfp68|24135|zinc finger protein 68	NM_001044747|Zfp68|24135|zinc finger protein 68	NM_001163797|Zfp68|24135|zinc finger protein 68	NM_013844|Zfp68|24135|zinc finger protein 68
mm9_v1_chr18_-_9449954_9450034	0.275301	CTCF.p2	BC035524|Ccny|67974|cyclin Y	AK017493|Ccny|67974|cyclin Y	AK006341|Ccny|67974|cyclin Y
mm9_v1_chr2_-_4573118_4573191	0.27289	CTCF.p2	AK139720|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC058631|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC004573|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	BC028306|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	NM_026045|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135890|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK035073|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)	AK135707|Prpf18|67229|PRP18 pre-mRNA processing factor 18 homolog (yeast)
mm9_v1_chr2_+_150574777_150574886	0.272575	CTCF.p2	AK030789|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	NM_172117|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	BC038126|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	BC028318|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6	AK156685|Entpd6|12497|ectonucleoside triphosphate diphosphohydrolase 6
mm9_v1_chr2_-_66094647_66094696	0.271948	CTCF.p2	BC151199|Ttc21b|73668|tetratricopeptide repeat domain 21B	BC172115|Ttc21b|73668|tetratricopeptide repeat domain 21B	DQ011164|Ttc21b|73668|tetratricopeptide repeat domain 21B	NM_001047604|Ttc21b|73668|tetratricopeptide repeat domain 21B
mm9_v1_chr11_+_5688463_5688609	0.271191	CTCF.p2	NM_001146308|Dbnl|13169|drebrin-like	NM_001146309|Dbnl|13169|drebrin-like	NM_013810|Dbnl|13169|drebrin-like	AK053796|Dbnl|13169|drebrin-like	AK046073|Dbnl|13169|drebrin-like	AK151096|Dbnl|13169|drebrin-like	AK152204|Dbnl|13169|drebrin-like	AK153072|Dbnl|13169|drebrin-like	AK161973|Dbnl|13169|drebrin-like	AK159984|Dbnl|13169|drebrin-like	AK168898|Dbnl|13169|drebrin-like	AK134136|Dbnl|13169|drebrin-like	AK134487|Dbnl|13169|drebrin-like	AK140752|Dbnl|13169|drebrin-like	AK146920|Dbnl|13169|drebrin-like	AK152110|Dbnl|13169|drebrin-like	BC046430|Dbnl|13169|drebrin-like	AK078082|Dbnl|13169|drebrin-like	AK172471|Dbnl|13169|drebrin-like	U58884|Dbnl|13169|drebrin-like	AK153389|Dbnl|13169|drebrin-like	AK142818|Dbnl|13169|drebrin-like	AK167956|Dbnl|13169|drebrin-like	AY098595|Dbnl|13169|drebrin-like	AK199448|Dbnl|13169|drebrin-like	AK203166|Dbnl|13169|drebrin-like
mm9_v1_chrX_+_151696991_151697138	0.270992	CTCF.p2	AK168713|Acot9|56360|acyl-CoA thioesterase 9	NM_019736|Acot9|56360|acyl-CoA thioesterase 9	AK076513|Acot9|56360|acyl-CoA thioesterase 9	BC021763|Acot9|56360|acyl-CoA thioesterase 9	AK002892|Acot9|56360|acyl-CoA thioesterase 9	AK009717|Acot9|56360|acyl-CoA thioesterase 9	AK088082|Acot9|56360|acyl-CoA thioesterase 9	AK170876|Acot9|56360|acyl-CoA thioesterase 9	AJ238893|Acot9|56360|acyl-CoA thioesterase 9	AB028898|Acot9|56360|acyl-CoA thioesterase 9
mm9_v1_chr15_+_89041957_89042070	0.270097	CTCF.p2	AK084684|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_026813|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_027805|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK083335|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	BC024879|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK018403|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chr1_+_82836029_82836087	0.269604	CTCF.p2	AK048326|Agfg1|15463|ArfGAP with FG repeats 1	NM_010472|Agfg1|15463|ArfGAP with FG repeats 1	AK049400|Agfg1|15463|ArfGAP with FG repeats 1	BC031154|Agfg1|15463|ArfGAP with FG repeats 1
mm9_v1_chr2_+_28368603_28368686	0.26789	CTCF.p2	NM_001145834|Ralgds|19730|ral guanine nucleotide dissociation stimulator	NM_009058|Ralgds|19730|ral guanine nucleotide dissociation stimulator
mm9_v1_chr16_-_17911283_17911450	0.267341	CTCF.p2	AK088520|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK142684|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AK148404|Dgcr14|27886|DiGeorge syndrome critical region gene 14	BC013711|Dgcr14|27886|DiGeorge syndrome critical region gene 14	AF037256|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_001081633|Dgcr14|27886|DiGeorge syndrome critical region gene 14	NM_022408|Dgcr14|27886|DiGeorge syndrome critical region gene 14
mm9_v1_chr18_-_77952721_77952748	0.267333	CTCF.p2	AK046785|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK033209|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK163840|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_178670|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr10_-_80813198_80813232	0.266969	CTCF.p2	AK153816|Hmg20b|15353|high mobility group 20 B	NM_001163166|Hmg20b|15353|high mobility group 20 B
mm9_v1_chr15_+_30102710_30102805	0.263689	CTCF.p2	BC138260|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	BC138261|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	BC145217|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chr1_-_134264461_134264465	0.263639	CTCF.p2	AK145948|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172313|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172382|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK158436|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK165309|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK171635|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172356|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172541|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172720|Tmcc2|68875|transmembrane and coiled-coil domains 2
mm9_v1_chr2_-_26495749_26495770	0.262625	CTCF.p2	BC046478|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7	AK011283|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7	AK028166|Snhg7|72091|small nucleolar RNA host gene (non-protein coding) 7
mm9_v1_chr2_-_93662687_93662734	0.262575	CTCF.p2	BC006597|Ext2|14043|exostoses (multiple) 2	U67837|Ext2|14043|exostoses (multiple) 2	U72141|Ext2|14043|exostoses (multiple) 2	AK152265|Ext2|14043|exostoses (multiple) 2	AK152840|Ext2|14043|exostoses (multiple) 2	AK082572|Ext2|14043|exostoses (multiple) 2	AK084772|Ext2|14043|exostoses (multiple) 2	AK164342|Ext2|14043|exostoses (multiple) 2	AK148090|Ext2|14043|exostoses (multiple) 2	AK150155|Ext2|14043|exostoses (multiple) 2	NM_010163|Ext2|14043|exostoses (multiple) 2
mm9_v1_chr1_-_173177232_173177235	0.262298	CTCF.p2	AK168971|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr4_-_46614726_46614844	0.262266	CTCF.p2	AK045728|Coro2a|107684|coronin, actin binding protein 2A	AK033455|Coro2a|107684|coronin, actin binding protein 2A	AK030971|Coro2a|107684|coronin, actin binding protein 2A	AK154247|Coro2a|107684|coronin, actin binding protein 2A	AK170184|Coro2a|107684|coronin, actin binding protein 2A	AK044060|Coro2a|107684|coronin, actin binding protein 2A	AK152490|Coro2a|107684|coronin, actin binding protein 2A	AK153134|Coro2a|107684|coronin, actin binding protein 2A	AK054394|Coro2a|107684|coronin, actin binding protein 2A	NM_001164804|Coro2a|107684|coronin, actin binding protein 2A
mm9_v1_chr3_-_89577134_89577321	0.260624	CTCF.p2	AK040741|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	AK047674|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	AK084338|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	BC106127|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	AK014549|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	AK169469|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	AK040882|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	AK164170|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene	AK048101|4632404H12Rik|74034|RIKEN cDNA 4632404H12 gene
mm9_v1_chr11_-_100621034_100621091	0.25965	CTCF.p2	BC150990|Kcnh4|380728|potassium voltage-gated channel, subfamily H (eag-related), member 4	BC150994|Kcnh4|380728|potassium voltage-gated channel, subfamily H (eag-related), member 4	NM_001081194|Kcnh4|380728|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm9_v1_chr7_+_4071087_4071169	0.2578	CTCF.p2	AK043998|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001001454|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001109765|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_021324|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK031550|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr11_+_101594342_101594372	0.254906	CTCF.p2	AK170616|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm9_v1_chr10_-_79446910_79447074	0.254256	CTCF.p2	NM_001003949|ORF61|216157|open reading frame 61
mm9_v1_chr5_-_36740713_36740796	0.252672	CTCF.p2	BC138873|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	BC138875|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AK053853|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AY004316|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AB093294|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	AK047881|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2	NM_030889|Sorcs2|81840|sortilin-related VPS10 domain containing receptor 2
mm9_v1_chr6_-_12699189_12699252	0.252513	CTCF.p2	NM_001164805|Thsd7a|330267|thrombospondin, type I, domain containing 7A
mm9_v1_chr3_-_89049756_89049818	0.251816	CTCF.p2	BC082299|Trim46|360213|tripartite motif-containing 46	NM_183037|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr16_+_18052952_18053027	0.251743	CTCF.p2	AK019346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	NM_010047|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK160342|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr19_+_4962305_4962355	0.251622	CTCF.p2	NM_025553|Mrpl11|66419|mitochondrial ribosomal protein L11	AK010329|Mrpl11|66419|mitochondrial ribosomal protein L11	AB049639|Mrpl11|66419|mitochondrial ribosomal protein L11	AK167247|Mrpl11|66419|mitochondrial ribosomal protein L11	AK002797|Mrpl11|66419|mitochondrial ribosomal protein L11	BC046750|Mrpl11|66419|mitochondrial ribosomal protein L11
mm9_v1_chr2_-_155340538_155340581	0.251506	CTCF.p2	BC005772|Ggt7|207182|gamma-glutamyltransferase 7	AK032051|Ggt7|207182|gamma-glutamyltransferase 7	NM_144786|Ggt7|207182|gamma-glutamyltransferase 7
mm9_v1_chr9_+_100544186_100544228	0.250508	CTCF.p2	BC069841|Stag1|20842|stromal antigen 1
mm9_v1_chr1_-_137327006_137327084	0.247121	CTCF.p2	AJ309238|Ipo9|226432|importin 9	AF273672|Ipo9|226432|importin 9	AF273673|Ipo9|226432|importin 9	AK036687|Ipo9|226432|importin 9	BC098508|Ipo9|226432|importin 9	BC056469|Ipo9|226432|importin 9	BC079546|Ipo9|226432|importin 9	NM_153774|Ipo9|226432|importin 9
mm9_v1_chr4_-_44085526_44085633	0.242414	CTCF.p2	AK170707|Gne|50798|glucosamine	NM_001190414|Gne|50798|glucosamine
mm9_v1_chr9_+_43552046_43552085	0.242329	CTCF.p2	AK147479|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr3_+_90024674_90024714	0.241685	CTCF.p2	BC027214|Rab13|68328|RAB13, member RAS oncogene family
mm9_v1_chr10_+_79132113_79132186	0.239714	CTCF.p2	BC138515|Gm16517|110012|predicted gene, Gm16517	BC138516|Gm16517|110012|predicted gene, Gm16517	AF303106|Gm16517|110012|predicted gene, Gm16517	NM_148934|Gm16517|110012|predicted gene, Gm16517
mm9_v1_chr14_+_8912873_8912900	0.239239	CTCF.p2	AK012105|Rpp14|67053|ribonuclease P 14 subunit (human)	AK016631|Rpp14|67053|ribonuclease P 14 subunit (human)	BC026988|Rpp14|67053|ribonuclease P 14 subunit (human)	BC046803|Rpp14|67053|ribonuclease P 14 subunit (human)
mm9_v1_chr11_-_115353104_115353170	0.238761	CTCF.p2	AF078840|Nt5c|50773|5',3'-nucleotidase, cytosolic	NM_015807|Nt5c|50773|5',3'-nucleotidase, cytosolic	BC024368|Nt5c|50773|5',3'-nucleotidase, cytosolic	AK007418|Nt5c|50773|5',3'-nucleotidase, cytosolic
mm9_v1_chr11_-_23397927_23397986	0.23727	CTCF.p2	BC038397|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	BC052829|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK033696|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK093945|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	NM_172391|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK154196|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK155265|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	AK137116|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)
mm9_v1_chr7_-_52308243_52308250	0.236241	CTCF.p2	BC075628|Prr12|233210|proline rich 12	NM_175022|Prr12|233210|proline rich 12
mm9_v1_chr2_+_144425688_144425695	0.235629	CTCF.p2	NM_025314|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr4_+_41702080_41702128	0.235453	CTCF.p2	NM_016658|Galt|14430|galactose-1-phosphate uridyl transferase
mm9_v1_chr6_+_35202653_35202668	0.230279	CTCF.p2	AK082166|1810058I24Rik|67705|RIKEN cDNA 1810058I24 gene
mm9_v1_chr1_-_33871261_33871282	0.228869	CTCF.p2	AK122541|Zfp451|98403|zinc finger protein 451	BC019546|Zfp451|98403|zinc finger protein 451	AK030088|Zfp451|98403|zinc finger protein 451	NM_133817|Zfp451|98403|zinc finger protein 451
mm9_v1_chr7_-_148623536_148623545	0.226025	CTCF.p2	AK018760|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chrX_+_35542969_35543017	0.22594	CTCF.p2	NM_001079513|Zbtb33|56805|zinc finger and BTB domain containing 33	NM_020256|Zbtb33|56805|zinc finger and BTB domain containing 33	AK087417|Zbtb33|56805|zinc finger and BTB domain containing 33	AK089423|Zbtb33|56805|zinc finger and BTB domain containing 33	AF097416|Zbtb33|56805|zinc finger and BTB domain containing 33
mm9_v1_chr9_-_45714487_45714524	0.225518	CTCF.p2	AK032376|Rnf214|235315|ring finger protein 214
mm9_v1_chr8_-_106966697_106966807	0.220406	CTCF.p2	AK152157|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK140743|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK147899|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161434|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK161494|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr10_+_126602182_126602286	0.219778	CTCF.p2	AK144484|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC057199|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	NM_008080|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC019969|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr5_+_115157787_115157882	0.219597	CTCF.p2	NM_029992|Tchp|77832|trichoplein, keratin filament binding	AK020912|Tchp|77832|trichoplein, keratin filament binding	AK159947|Tchp|77832|trichoplein, keratin filament binding	AK083027|Tchp|77832|trichoplein, keratin filament binding	BC043048|Tchp|77832|trichoplein, keratin filament binding
mm9_v1_chr4_-_57156103_57156256	0.219221	CTCF.p2	BC113123|Epb4.1l4b|54357|erythrocyte protein band 4.1-like 4b
mm9_v1_chr5_+_144861227_144861325	0.218862	CTCF.p2	AK158724|Lmtk2|231876|lemur tyrosine kinase 2	NM_001081109|Lmtk2|231876|lemur tyrosine kinase 2
mm9_v1_chr17_-_66450782_66450906	0.218023	CTCF.p2	AK159460|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	BC030946|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK146998|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	NM_028388|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK150404|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK151729|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK078351|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK013511|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK166539|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2	AK169143|Ndufv2|72900|NADH dehydrogenase (ubiquinone) flavoprotein 2
mm9_v1_chr3_-_9610062_9610137	0.217666	CTCF.p2	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr17_+_24488985_24489087	0.215846	CTCF.p2	AK166355|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	NM_001039581|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	NM_013855|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	BC047356|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	AK089794|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	AK168428|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	AK165458|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	AK089316|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	AK154698|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3	AY083616|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chr1_+_163899349_163899385	0.215578	CTCF.p2	AK161117|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	AK170153|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	AK008524|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	AK014096|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	AK155971|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C	BC006938|Pigc|67292|phosphatidylinositol glycan anchor biosynthesis, class C
mm9_v1_chr17_-_15664238_15664282	0.215205	CTCF.p2	DQ906042|Pdcd2|18567|programmed cell death 2	U10903|Pdcd2|18567|programmed cell death 2	AK045985|Pdcd2|18567|programmed cell death 2	NM_008799|Pdcd2|18567|programmed cell death 2
mm9_v1_chr9_-_108354707_108354736	0.213312	CTCF.p2	BC048918|Klhdc8b|78267|kelch domain containing 8B
mm9_v1_chr2_+_25284190_25284289	0.212692	CTCF.p2	AK169438|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	NM_007379|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	X75927|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2
mm9_v1_chr6_+_108733041_108733073	0.211804	CTCF.p2	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr9_-_86358490_86358538	0.211466	CTCF.p2	BC115687|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	BC115686|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK049229|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	NM_027394|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein	AK011446|Ube2cbp|70348|ubiquitin-conjugating enzyme E2C binding protein
mm9_v1_chr1_+_59969845_59969868	0.21101	CTCF.p2	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr6_-_39760868_39760934	0.208773	CTCF.p2	BC028645|Mrps33|14548|mitochondrial ribosomal protein S33	BC087881|Mrps33|14548|mitochondrial ribosomal protein S33	AK019000|Mrps33|14548|mitochondrial ribosomal protein S33	AK144131|Mrps33|14548|mitochondrial ribosomal protein S33	Y17852|Mrps33|14548|mitochondrial ribosomal protein S33	NM_001010930|Mrps33|14548|mitochondrial ribosomal protein S33	NM_010270|Mrps33|14548|mitochondrial ribosomal protein S33
mm9_v1_chr11_+_119352933_119353046	0.20839	CTCF.p2	NM_177394|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK170595|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK172181|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	BC056486|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK042626|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene
mm9_v1_chr19_+_45063750_45063833	0.207944	CTCF.p2	AK039355|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	BC054532|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AK173219|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AF134918|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	NM_011976|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm9_v1_chr5_+_122841885_122841976	0.20551	CTCF.p2	AK003485|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK005437|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK171651|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC013618|Arpc3|56378|actin related protein 2/3 complex, subunit 3	NM_019824|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC054440|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC055036|Arpc3|56378|actin related protein 2/3 complex, subunit 3
mm9_v1_chr7_+_106774445_106774513	0.205246	CTCF.p2	AK141001|Gm10605|100038557|predicted gene 10605
mm9_v1_chr9_-_53475563_53475590	0.203044	CTCF.p2	BC019661|Cul5|75717|cullin 5	AK046030|Cul5|75717|cullin 5
mm9_v1_chr9_-_107134182_107134239	0.201848	CTCF.p2	AY145302|Dock3|208869|dedicator of cyto-kinesis 3	AK172930|Dock3|208869|dedicator of cyto-kinesis 3	NM_153413|Dock3|208869|dedicator of cyto-kinesis 3
mm9_v1_chr9_-_113935832_113935880	0.198189	CTCF.p2	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr15_-_36426471_36426537	0.196874	CTCF.p2	AK088304|Ankrd46|68839|ankyrin repeat domain 46	AK148049|Ankrd46|68839|ankyrin repeat domain 46	BC094595|Ankrd46|68839|ankyrin repeat domain 46	BC086659|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr18_+_74375999_74376040	0.196864	CTCF.p2	BC030938|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr17_-_27327042_27327306	0.196642	CTCF.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr18_-_62071256_62071263	0.195597	CTCF.p2	AK086538|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr4_-_138469861_138469885	0.194584	CTCF.p2	NM_028453|Otud3|73162|OTU domain containing 3
mm9_v1_chr6_+_38484796_38484868	0.194465	CTCF.p2	AK003231|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	BC059710|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	AK008291|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	NM_025363|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene	AK009186|1110001J03Rik|66117|RIKEN cDNA 1110001J03 gene
mm9_v1_chr2_+_144425704_144425774	0.193464	CTCF.p2	BC026537|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK003594|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK011917|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK010822|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK002246|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK017565|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr17_-_35973192_35973216	0.191056	CTCF.p2	AK013283|Tubb5|22154|tubulin, beta 5	AK012365|Tubb5|22154|tubulin, beta 5
mm9_v1_chr14_-_56341010_56341044	0.189861	CTCF.p2	AF127656|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127657|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127658|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127659|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127660|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127661|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127662|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	NM_019519|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	BC012214|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AK146917|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr7_-_129245303_129245368	0.189516	CTCF.p2	AK167447|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK089103|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC092379|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	BC060951|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018717|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK008788|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK009698|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK010307|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK011302|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK018688|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK151719|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	AK152995|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	NM_028177|Ndufab1|70316|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm9_v1_chr19_+_57435498_57435553	0.189162	CTCF.p2	NM_145505|Fam160b1|226252|family with sequence similarity 160, member B1	AK046518|Fam160b1|226252|family with sequence similarity 160, member B1	AK147386|Fam160b1|226252|family with sequence similarity 160, member B1	AK172373|Fam160b1|226252|family with sequence similarity 160, member B1	AK054539|Fam160b1|226252|family with sequence similarity 160, member B1
mm9_v1_chr18_+_38456364_38456458	0.187297	CTCF.p2	AK011316|Rnf14|56736|ring finger protein 14	BC049079|Rnf14|56736|ring finger protein 14	NM_001164621|Rnf14|56736|ring finger protein 14
mm9_v1_chr4_+_155205723_155205804	0.186618	CTCF.p2	AK003442|Aurkaip1|66077|aurora kinase A interacting protein 1	NM_025338|Aurkaip1|66077|aurora kinase A interacting protein 1	AK002737|Aurkaip1|66077|aurora kinase A interacting protein 1	AK158165|Aurkaip1|66077|aurora kinase A interacting protein 1	AK033452|Aurkaip1|66077|aurora kinase A interacting protein 1	AK166049|Aurkaip1|66077|aurora kinase A interacting protein 1	BC011245|Aurkaip1|66077|aurora kinase A interacting protein 1	AK144719|Aurkaip1|66077|aurora kinase A interacting protein 1
mm9_v1_chr2_-_30823346_30823454	0.185799	CTCF.p2	AK082936|Tor1a|30931|torsin family 1, member A (torsin A)	AK079728|Tor1a|30931|torsin family 1, member A (torsin A)	AJ298841|Tor1a|30931|torsin family 1, member A (torsin A)	AK038891|Tor1a|30931|torsin family 1, member A (torsin A)	AK160361|Tor1a|30931|torsin family 1, member A (torsin A)	BC017683|Tor1a|30931|torsin family 1, member A (torsin A)	NM_144884|Tor1a|30931|torsin family 1, member A (torsin A)
mm9_v1_chr19_-_10944196_10944284	0.185668	CTCF.p2	BC006896|Tmem132a|98170|transmembrane protein 132A	AK173207|Tmem132a|98170|transmembrane protein 132A	AK036651|Tmem132a|98170|transmembrane protein 132A	AK032956|Tmem132a|98170|transmembrane protein 132A	AK048556|Tmem132a|98170|transmembrane protein 132A	AK164646|Tmem132a|98170|transmembrane protein 132A	NM_133804|Tmem132a|98170|transmembrane protein 132A
mm9_v1_chr2_+_78709363_78709419	0.184976	CTCF.p2	AK168072|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK048227|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK076011|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	X92664|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr15_+_76174727_76174807	0.184199	CTCF.p2	AK182781|Cyc1|66445|cytochrome c-1	AK188690|Cyc1|66445|cytochrome c-1	AK184866|Cyc1|66445|cytochrome c-1	AK195664|Cyc1|66445|cytochrome c-1	AK215816|Cyc1|66445|cytochrome c-1
mm9_v1_chr3_+_89534639_89534732	0.183632	CTCF.p2	NM_001146296|Adar|56417|adenosine deaminase, RNA-specific	NM_019655|Adar|56417|adenosine deaminase, RNA-specific	AK089451|Adar|56417|adenosine deaminase, RNA-specific	BC042505|Adar|56417|adenosine deaminase, RNA-specific	AF052506|Adar|56417|adenosine deaminase, RNA-specific	AF291050|Adar|56417|adenosine deaminase, RNA-specific	AF291875|Adar|56417|adenosine deaminase, RNA-specific	AF291876|Adar|56417|adenosine deaminase, RNA-specific	AF291877|Adar|56417|adenosine deaminase, RNA-specific	CT010323|Adar|56417|adenosine deaminase, RNA-specific
mm9_v1_chr1_+_196802566_196802578	0.183555	CTCF.p2	AK039326|A330023F24Rik|320977|RIKEN cDNA A330023F24 gene	AK171382|A330023F24Rik|320977|RIKEN cDNA A330023F24 gene
mm9_v1_chr5_-_137943329_137943368	0.183176	CTCF.p2	AK158620|Pop7|74097|processing of precursor 7, ribonuclease P family, (S. cerevisiae)
mm9_v1_chr8_+_121971001_121971009	0.182917	CTCF.p2	AK082727|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr10_-_117147722_117147744	0.181718	CTCF.p2	X58876|Mdm2|17246|transformed mouse 3T3 cell double minute 2	BC050902|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK004881|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK088638|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr5_+_140807854_140807891	0.178303	CTCF.p2	AK168312|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	D49956|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	NM_008637|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	BC021940|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	AK088309|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1	AK011695|Nudt1|17766|nudix (nucleoside diphosphate linked moiety X)-type motif 1
mm9_v1_chr6_-_86347093_86347158	0.177365	CTCF.p2	AK049412|Pcyox1|66881|prenylcysteine oxidase 1	AK033373|Pcyox1|66881|prenylcysteine oxidase 1	AK004799|Pcyox1|66881|prenylcysteine oxidase 1	AK004840|Pcyox1|66881|prenylcysteine oxidase 1	AK031585|Pcyox1|66881|prenylcysteine oxidase 1	AK159981|Pcyox1|66881|prenylcysteine oxidase 1	AK161616|Pcyox1|66881|prenylcysteine oxidase 1	AK169209|Pcyox1|66881|prenylcysteine oxidase 1	AK145366|Pcyox1|66881|prenylcysteine oxidase 1	AK147190|Pcyox1|66881|prenylcysteine oxidase 1	BC028308|Pcyox1|66881|prenylcysteine oxidase 1	AK134528|Pcyox1|66881|prenylcysteine oxidase 1	NM_025823|Pcyox1|66881|prenylcysteine oxidase 1
mm9_v1_chr4_+_86221615_86221621	0.176604	CTCF.p2	BC037615|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr14_-_56377260_56377270	0.175851	CTCF.p2	NM_009894|Cideb|12684|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
mm9_v1_chr3_+_132973036_132973189	0.175691	CTCF.p2	BC011417|Ppa2|74776|pyrophosphatase (inorganic) 2	NM_146141|Ppa2|74776|pyrophosphatase (inorganic) 2	AK090384|Ppa2|74776|pyrophosphatase (inorganic) 2	AK143475|Ppa2|74776|pyrophosphatase (inorganic) 2
mm9_v1_chrX_-_9793824_9794045	0.175678	CTCF.p2	AJ238396|Rpgr|19893|retinitis pigmentosa GTPase regulator	AF044677|Rpgr|19893|retinitis pigmentosa GTPase regulator	BC012661|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK136298|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK017192|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK081631|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK038652|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177950|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177951|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177953|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_001177954|Rpgr|19893|retinitis pigmentosa GTPase regulator	NM_011285|Rpgr|19893|retinitis pigmentosa GTPase regulator	AK029864|Rpgr|19893|retinitis pigmentosa GTPase regulator
mm9_v1_chr11_-_3813644_3813898	0.175296	CTCF.p2	BC020181|Slc35e4|103710|solute carrier family 35, member E4	BC095957|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr12_-_101758964_101759037	0.175221	CTCF.p2	AK046740|Ttc7b|104718|tetratricopeptide repeat domain 7B	AK148363|Ttc7b|104718|tetratricopeptide repeat domain 7B	NM_001033213|Ttc7b|104718|tetratricopeptide repeat domain 7B
mm9_v1_chr10_+_120471255_120471291	0.174621	CTCF.p2	BC013268|Wif1|24117|Wnt inhibitory factor 1	AF122923|Wif1|24117|Wnt inhibitory factor 1
mm9_v1_chr17_+_9181197_9181252	0.174343	CTCF.p2	NM_025851|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK161278|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK005830|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	BC050753|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK006307|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	AK015220|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene	BC061078|1700010I14Rik|66931|RIKEN cDNA 1700010I14 gene
mm9_v1_chr7_-_29157512_29157714	0.174005	CTCF.p2	AK131110|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AF465238|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AK144152|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_001083912|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_138752|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
mm9_v1_chr17_-_56175896_56176097	0.173379	CTCF.p2	AK162715|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138602|Sh3gl1|20405|SH3-domain GRB2-like 1	BC138603|Sh3gl1|20405|SH3-domain GRB2-like 1	BC145345|Sh3gl1|20405|SH3-domain GRB2-like 1	NM_013664|Sh3gl1|20405|SH3-domain GRB2-like 1	U58885|Sh3gl1|20405|SH3-domain GRB2-like 1	AK167505|Sh3gl1|20405|SH3-domain GRB2-like 1	AK154836|Sh3gl1|20405|SH3-domain GRB2-like 1
mm9_v1_chr1_+_120218430_120218469	0.173252	CTCF.p2	AK019209|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	BC058559|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK011340|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AY030275|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK009440|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK081486|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AB056870|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chr9_-_122220036_122220045	0.173081	CTCF.p2	
mm9_v1_chr3_-_63733305_63733317	0.169145	CTCF.p2	AK087526|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene	NM_177856|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene
mm9_v1_chr2_-_113669159_113669225	0.168955	CTCF.p2	AK031856|Scg5|20394|secretogranin V	AK011938|Scg5|20394|secretogranin V	AK003049|Scg5|20394|secretogranin V	AK161556|Scg5|20394|secretogranin V	AK161579|Scg5|20394|secretogranin V	AK005331|Scg5|20394|secretogranin V	X15830|Scg5|20394|secretogranin V
mm9_v1_chr7_-_148623489_148623526	0.168914	CTCF.p2	AK048389|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK049313|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK010193|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK046874|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr9_+_109735261_109735329	0.167898	CTCF.p2	AK004201|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	AF051942|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	BC002007|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	NM_018757|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr18_+_37112301_37112419	0.166966	CTCF.p2	AK149282|Pcdha4|12936|protocadherin alpha 4	AK048980|Pcdha4|12936|protocadherin alpha 4	BC060211|Pcdha4|12936|protocadherin alpha 4	D86916|Pcdha4|12936|protocadherin alpha 4	NM_007766|Pcdha4|12936|protocadherin alpha 4	AF464180|Pcdha4-g|100384868|protocadherin alpha 4-gamma	NM_001174154|Pcdha4-g|100384868|protocadherin alpha 4-gamma	AY013762|Pcdha4|12936|protocadherin alpha 4
mm9_v1_chr9_+_90057930_90058082	0.166514	CTCF.p2	BC076575|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	BC141173|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	BC145491|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	AY551090|Adamts7|108153|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm9_v1_chr10_-_117147757_117147818	0.165761	CTCF.p2	AK168690|Mdm2|17246|transformed mouse 3T3 cell double minute 2	BC092270|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK004719|Mdm2|17246|transformed mouse 3T3 cell double minute 2	NM_010786|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr5_+_130231003_130231023	0.164808	CTCF.p2	AK170336|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr14_-_56341060_56341137	0.163908	CTCF.p2	AK002625|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr7_-_87485030_87485120	0.162595	CTCF.p2	AK047292|Unc45a|101869|unc-45 homolog A (C. elegans)	AK047476|Unc45a|101869|unc-45 homolog A (C. elegans)	AK088034|Unc45a|101869|unc-45 homolog A (C. elegans)	AK087777|Unc45a|101869|unc-45 homolog A (C. elegans)	AK166809|Unc45a|101869|unc-45 homolog A (C. elegans)	AK028912|Unc45a|101869|unc-45 homolog A (C. elegans)	BC004717|Unc45a|101869|unc-45 homolog A (C. elegans)	NM_133952|Unc45a|101869|unc-45 homolog A (C. elegans)
mm9_v1_chr17_-_27702625_27702715	0.162062	CTCF.p2	BC028464|AI413582|106672|expressed sequence AI413582	AK131681|AI413582|106672|expressed sequence AI413582	AK131593|AI413582|106672|expressed sequence AI413582	NM_001002895|AI413582|106672|expressed sequence AI413582
mm9_v1_chr4_-_45120942_45121003	0.161502	CTCF.p2	AK003822|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001099675|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)	NM_001134646|Tomm5|68512|translocase of outer mitochondrial membrane 5 homolog (yeast)
mm9_v1_chrX_-_146893563_146893717	0.159998	CTCF.p2	AK012546|Tmem29|382245|transmembrane protein 29	NM_001164683|Tmem29|382245|transmembrane protein 29
mm9_v1_chr15_-_44619541_44619608	0.159788	CTCF.p2	AK049811|Sybu|319613|syntabulin (syntaxin-interacting)	AK047449|Sybu|319613|syntabulin (syntaxin-interacting)	AB232447|Sybu|319613|syntabulin (syntaxin-interacting)	AB232448|Sybu|319613|syntabulin (syntaxin-interacting)	AK043739|Sybu|319613|syntabulin (syntaxin-interacting)	NM_001032727|Sybu|319613|syntabulin (syntaxin-interacting)	NM_176998|Sybu|319613|syntabulin (syntaxin-interacting)
mm9_v1_chr10_+_11001072_11001225	0.159176	CTCF.p2	NM_027968|Fbxo30|71865|F-box protein 30	AK083479|Fbxo30|71865|F-box protein 30	AK135274|Fbxo30|71865|F-box protein 30
mm9_v1_chr19_-_5349326_5349384	0.158835	CTCF.p2	BC027680|Cst6|73720|cystatin E/M	BC061036|Cst6|73720|cystatin E/M	AK003744|Cst6|73720|cystatin E/M
mm9_v1_chr2_+_155207581_155207616	0.158427	CTCF.p2	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr13_+_51942043_51942063	0.158348	CTCF.p2	NM_011817|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK002237|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK007410|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AB021884|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	BC001989|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AF055638|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma
mm9_v1_chr9_+_66006025_66006053	0.157964	CTCF.p2	NM_010019|Dapk2|13143|death-associated protein kinase 2	AK158082|Dapk2|13143|death-associated protein kinase 2	AB018002|Dapk2|13143|death-associated protein kinase 2
mm9_v1_chr13_-_58009650_58009651	0.157919	CTCF.p2	AK051191|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr11_-_118947424_118947559	0.157433	CTCF.p2	BC117801|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC117802|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	U63387|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC045162|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	BC018304|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)	NM_007625|Cbx4|12418|chromobox homolog 4 (Drosophila Pc class)
mm9_v1_chr8_+_119467267_119467410	0.156922	CTCF.p2	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr14_-_14953416_14953474	0.156366	CTCF.p2	BC006869|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	NM_025550|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AK002343|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AK010287|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AJ252147|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
mm9_v1_chr13_+_54723144_54723248	0.156045	CTCF.p2	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr17_+_21520684_21520739	0.154894	CTCF.p2	AK043955|Zfp677|210503|zinc finger protein 677	NM_172486|Zfp677|210503|zinc finger protein 677	BC057947|Zfp677|210503|zinc finger protein 677
mm9_v1_chr2_+_65458814_65458867	0.153994	CTCF.p2	
mm9_v1_chr14_-_56340701_56340743	0.153504	CTCF.p2	AK181036|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr19_-_3912727_3912762	0.153143	CTCF.p2	BC086766|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK149674|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	BC021616|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK153900|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK164901|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	AK167907|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8
mm9_v1_chr9_+_66006060_66006077	0.152675	CTCF.p2	AK004350|Dapk2|13143|death-associated protein kinase 2	BC022165|Dapk2|13143|death-associated protein kinase 2
mm9_v1_chr1_-_145624156_145624181	0.152501	CTCF.p2	AK076167|Trove2|20822|TROVE domain family, member 2	NM_013835|Trove2|20822|TROVE domain family, member 2
mm9_v1_chr8_+_73895221_73895251	0.150675	CTCF.p2	AK155219|Ocel1|77090|occludin/ELL domain containing 1	AK143433|Ocel1|77090|occludin/ELL domain containing 1	BC019407|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr17_+_25910720_25910771	0.150421	CTCF.p2	AK145408|Narfl|67563|nuclear prelamin A recognition factor-like	NM_026238|Narfl|67563|nuclear prelamin A recognition factor-like	AK014038|Narfl|67563|nuclear prelamin A recognition factor-like	AK043694|Narfl|67563|nuclear prelamin A recognition factor-like	AK018548|Narfl|67563|nuclear prelamin A recognition factor-like	BC052830|Narfl|67563|nuclear prelamin A recognition factor-like	BC020468|Narfl|67563|nuclear prelamin A recognition factor-like	BC025108|Narfl|67563|nuclear prelamin A recognition factor-like
mm9_v1_chr15_+_82176434_82176522	0.150019	CTCF.p2	AK151325|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK152795|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	BC028457|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	NM_026914|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK005345|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	AK170899|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene	BC092006|1500032L24Rik|69029|RIKEN cDNA 1500032L24 gene
mm9_v1_chr16_+_31428833_31428879	0.14885	CTCF.p2	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr9_-_60535274_60535340	0.14745	CTCF.p2	AK051325|Lrrc49|102747|leucine rich repeat containing 49	NM_001146047|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr2_+_126378563_126378890	0.147316	CTCF.p2	AK165446|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	NM_011978|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144069|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC013442|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC024735|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC022170|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AJ223958|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144070|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF033031|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF072757|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2
mm9_v1_chr1_-_79855209_79855213	0.146244	CTCF.p2	AK045954|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK047856|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK051332|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK159687|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK160700|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK164270|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	X70296|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr2_-_148701203_148701269	0.146183	CTCF.p2	AK002438|Cst3|13010|cystatin C	NM_009976|Cst3|13010|cystatin C	AK014368|Cst3|13010|cystatin C	AK131728|Cst3|13010|cystatin C	AK146333|Cst3|13010|cystatin C
mm9_v1_chr2_+_29725007_29725021	0.145492	CTCF.p2	NM_207298|Cercam|99151|cerebral endothelial cell adhesion molecule	AK155384|Cercam|99151|cerebral endothelial cell adhesion molecule
mm9_v1_chr3_-_116210955_116211092	0.144482	CTCF.p2	AK167830|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK151108|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK151400|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK159961|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK002543|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	BC016519|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK009245|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	BC090403|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	AK152129|Rtcd1|66368|RNA terminal phosphate cyclase domain 1	NM_025517|Rtcd1|66368|RNA terminal phosphate cyclase domain 1
mm9_v1_chr2_-_11423651_11423672	0.144213	CTCF.p2	AF294617|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK154607|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	BC057320|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr11_+_55017825_55017912	0.144102	CTCF.p2	NM_153139|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	AY211262|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138556|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1	BC138558|Slc36a1|215335|solute carrier family 36 (proton/amino acid symporter), member 1
mm9_v1_chr15_+_102300902_102300971	0.142312	CTCF.p2	AK169268|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr2_+_179906270_179906395	0.141964	CTCF.p2	BC008974|Adrm1|56436|adhesion regulating molecule 1	NM_019822|Adrm1|56436|adhesion regulating molecule 1	AK166878|Adrm1|56436|adhesion regulating molecule 1	AK145792|Adrm1|56436|adhesion regulating molecule 1	AK082084|Adrm1|56436|adhesion regulating molecule 1	AK010919|Adrm1|56436|adhesion regulating molecule 1	AK143843|Adrm1|56436|adhesion regulating molecule 1	AK145474|Adrm1|56436|adhesion regulating molecule 1	AK150091|Adrm1|56436|adhesion regulating molecule 1	BC031517|Adrm1|56436|adhesion regulating molecule 1	BC019746|Adrm1|56436|adhesion regulating molecule 1	AF225959|Adrm1|56436|adhesion regulating molecule 1
mm9_v1_chr19_+_42245102_42245124	0.139941	CTCF.p2	BC042595|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr13_-_43295201_43295224	0.139517	CTCF.p2	AK036079|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1
mm9_v1_chrX_-_42143166_42143193	0.139052	CTCF.p2	BC068319|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK034343|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK039767|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1
mm9_v1_chr3_+_121948399_121948534	0.138901	CTCF.p2	AK028236|Gclm|14630|glutamate-cysteine ligase, modifier subunit	NM_008129|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK172387|Gclm|14630|glutamate-cysteine ligase, modifier subunit
mm9_v1_chr14_+_57506630_57506655	0.137863	CTCF.p2	NM_029498|Zmym2|76007|zinc finger, MYM-type 2	BC141403|Zmym2|76007|zinc finger, MYM-type 2
mm9_v1_chr4_+_21775172_21775224	0.137498	CTCF.p2	AK162695|Sfrs18|66625|serine/arginine-rich splicing factor 18	AK012036|Sfrs18|66625|serine/arginine-rich splicing factor 18	AK031964|Sfrs18|66625|serine/arginine-rich splicing factor 18	AK017507|Sfrs18|66625|serine/arginine-rich splicing factor 18	AK020035|Sfrs18|66625|serine/arginine-rich splicing factor 18	AK081407|Sfrs18|66625|serine/arginine-rich splicing factor 18	AK083021|Sfrs18|66625|serine/arginine-rich splicing factor 18	AK160288|Sfrs18|66625|serine/arginine-rich splicing factor 18	BC060111|Sfrs18|66625|serine/arginine-rich splicing factor 18
mm9_v1_chr2_+_148506844_148506905	0.13683	CTCF.p2	NM_028986|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK141153|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK052820|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK053262|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK080513|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr2_-_120178819_120178881	0.136324	CTCF.p2	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr3_+_90346956_90347018	0.136085	CTCF.p2	AK002991|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr11_-_115674905_115674973	0.134857	CTCF.p2	BC053083|Caskin2|140721|CASK-interacting protein 2	NM_080643|Caskin2|140721|CASK-interacting protein 2	AK129297|Caskin2|140721|CASK-interacting protein 2
mm9_v1_chr1_-_173177242_173177242	0.134812	CTCF.p2	AK078474|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2	NM_153064|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr19_-_24355054_24355107	0.134057	CTCF.p2	BC058533|Fxn|14297|frataxin	BC125337|Fxn|14297|frataxin	BC132337|Fxn|14297|frataxin	NM_008044|Fxn|14297|frataxin	U95736|Fxn|14297|frataxin	AK160458|Fxn|14297|frataxin	AK148147|Fxn|14297|frataxin
mm9_v1_chr16_+_16896561_16896699	0.133649	CTCF.p2	AK016942|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	NM_176833|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK154192|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)	AK164964|Ppm1f|68606|protein phosphatase 1F (PP2C domain containing)
mm9_v1_chr1_-_173957407_173957430	0.132822	CTCF.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr11_+_101594269_101594313	0.131054	CTCF.p2	AK153829|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	NM_144831|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	BC132445|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8	AK220485|Dhx8|217207|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm9_v1_chr12_+_71926429_71926675	0.129746	CTCF.p2	BC053929|Frmd6|319710|FERM domain containing 6	NM_028127|Frmd6|319710|FERM domain containing 6	AK054457|Frmd6|319710|FERM domain containing 6
mm9_v1_chr2_-_66248146_66248185	0.12897	CTCF.p2	
mm9_v1_chr16_+_96689322_96689354	0.128941	CTCF.p2	
mm9_v1_chr7_-_52391756_52391816	0.128864	CTCF.p2	BC019801|Flt3l|14256|FMS-like tyrosine kinase 3 ligand	AK020105|Flt3l|14256|FMS-like tyrosine kinase 3 ligand	NM_013520|Flt3l|14256|FMS-like tyrosine kinase 3 ligand
mm9_v1_chr4_-_148511650_148511708	0.127846	CTCF.p2	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr12_+_21117592_21117662	0.127658	CTCF.p2	AK147622|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC080847|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001004364|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001098168|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001135192|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr6_-_90378423_90378473	0.127574	CTCF.p2	BC047211|Ccdc37|243538|coiled-coil domain containing 37	AK021139|Ccdc37|243538|coiled-coil domain containing 37	NM_173775|Ccdc37|243538|coiled-coil domain containing 37
mm9_v1_chr5_+_109098283_109098358	0.127515	CTCF.p2	AK169998|Idua|15932|iduronidase, alpha-L-	AK031414|Idua|15932|iduronidase, alpha-L-	AK045330|Idua|15932|iduronidase, alpha-L-	BC057935|Idua|15932|iduronidase, alpha-L-
mm9_v1_chr1_-_173177212_173177226	0.126274	CTCF.p2	AK151746|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2	AK153364|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2	BC003898|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr13_+_55794441_55794492	0.125188	CTCF.p2	AK088693|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	BC051430|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	NM_181278|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr16_+_11066390_11066492	0.124121	CTCF.p2	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chr19_-_42160732_42160861	0.123525	CTCF.p2	AK180979|Morn4|226123|MORN repeat containing 4	AK214121|Morn4|226123|MORN repeat containing 4	BC023055|Morn4|226123|MORN repeat containing 4	AK159230|Morn4|226123|MORN repeat containing 4	AK154147|Morn4|226123|MORN repeat containing 4	NM_198108|Morn4|226123|MORN repeat containing 4
mm9_v1_chr15_-_83295010_83295059	0.123442	CTCF.p2	NM_001159509|Pacsin2|23970|protein kinase C and casein kinase substrate in neurons 2
mm9_v1_chr2_+_180324111_180324218	0.123176	CTCF.p2	NM_031373|Ogfr|72075|opioid growth factor receptor	AK008230|Ogfr|72075|opioid growth factor receptor	AF303894|Ogfr|72075|opioid growth factor receptor	BC049965|Ogfr|72075|opioid growth factor receptor	AK149146|Ogfr|72075|opioid growth factor receptor	BC003875|Ogfr|72075|opioid growth factor receptor	AK150115|Ogfr|72075|opioid growth factor receptor
mm9_v1_chr1_-_33871349_33871443	0.122947	CTCF.p2	AK015797|Zfp451|98403|zinc finger protein 451
mm9_v1_chr9_+_108362848_108362907	0.12151	CTCF.p2	NM_133744|Ccdc71|72454|coiled-coil domain containing 71	AK085544|Ccdc71|72454|coiled-coil domain containing 71	AK079333|Ccdc71|72454|coiled-coil domain containing 71	AK011229|Ccdc71|72454|coiled-coil domain containing 71	AK044601|Ccdc71|72454|coiled-coil domain containing 71	AK086560|Ccdc71|72454|coiled-coil domain containing 71	AK149878|Ccdc71|72454|coiled-coil domain containing 71	AK136982|Ccdc71|72454|coiled-coil domain containing 71	BC018518|Ccdc71|72454|coiled-coil domain containing 71
mm9_v1_chr12_-_85958287_85958415	0.121161	CTCF.p2	AJ001166|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	AK028420|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	BC050102|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	NM_008992|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4
mm9_v1_chr2_-_168032561_168032640	0.119798	CTCF.p2	NM_009628|Adnp|11538|activity-dependent neuroprotective protein	AK129214|Adnp|11538|activity-dependent neuroprotective protein
mm9_v1_chr17_-_3114749_3114798	0.119796	CTCF.p2	AK138253|A230045G11Rik|624086|RIKEN cDNA A230045G11 gene	AK133970|A230045G11Rik|624086|RIKEN cDNA A230045G11 gene
mm9_v1_chr18_-_34166859_34166859	0.119239	CTCF.p2	NM_013512|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr7_+_4610254_4610262	0.118837	CTCF.p2	
mm9_v1_chr12_+_22990655_22990730	0.118359	CTCF.p2	BC063063|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK134640|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK013418|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK010549|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene
mm9_v1_chr14_+_66915852_66915861	0.11812	CTCF.p2	NM_029979|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr14_-_25306272_25306281	0.118028	CTCF.p2	AK039440|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr6_-_137118238_137118241	0.117885	CTCF.p2	NM_001164212|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	NM_001164214|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr2_-_174120889_174120936	0.117512	CTCF.p2	AF319945|Nespas|56802|neuroendocrine secretory protein antisense	AK153813|Nespas|56802|neuroendocrine secretory protein antisense
mm9_v1_chr6_-_83725776_83725818	0.116943	CTCF.p2	AK157834|Tex261|21766|testis expressed gene 261	NM_009357|Tex261|21766|testis expressed gene 261
mm9_v1_chr5_-_130500116_130500235	0.116058	CTCF.p2	AK148764|Asl|109900|argininosuccinate lyase	AK168739|Asl|109900|argininosuccinate lyase	AK138423|Asl|109900|argininosuccinate lyase	BC016670|Asl|109900|argininosuccinate lyase	NM_133768|Asl|109900|argininosuccinate lyase	AK010922|Asl|109900|argininosuccinate lyase	AK076453|Asl|109900|argininosuccinate lyase	AK140160|Asl|109900|argininosuccinate lyase
mm9_v1_chr2_+_163428044_163428072	0.115668	CTCF.p2	AK039450|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_029512|Ttpal|76080|tocopherol (alpha) transfer protein-like	NM_181734|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr2_+_58419708_58419797	0.114801	CTCF.p2	AK087904|Upp2|76654|uridine phosphorylase 2	AK161816|Upp2|76654|uridine phosphorylase 2	AK044005|Upp2|76654|uridine phosphorylase 2
mm9_v1_chr1_+_152239986_152240102	0.114768	CTCF.p2	BC141406|Tpr|108989|translocated promoter region	BC141410|Tpr|108989|translocated promoter region
mm9_v1_chr11_+_80242103_80242184	0.11474	CTCF.p2	AK145731|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK166950|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	NM_178616|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK168289|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK051738|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK076002|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK140773|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK167559|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC119136|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC119138|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK007547|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC090980|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK089942|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK136049|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC100595|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC090664|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC037590|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC055457|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm9_v1_chr17_+_27822162_27822200	0.11407	CTCF.p2	AK043967|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_178365|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr5_-_137043355_137043363	0.11402	CTCF.p2	
mm9_v1_chr5_-_100467887_100467935	0.113897	CTCF.p2	BC021374|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like	AK172629|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like	AK011581|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like	AK011767|Hnrpdl|50926|heterogeneous nuclear ribonucleoprotein D-like
mm9_v1_chr5_+_110973321_110973404	0.113795	CTCF.p2	NM_198306|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	AK032568|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
mm9_v1_chr11_-_105805442_105805573	0.113679	CTCF.p2	AK169711|Cyb561|13056|cytochrome b-561	AK014395|Cyb561|13056|cytochrome b-561	NM_007805|Cyb561|13056|cytochrome b-561	U16297|Cyb561|13056|cytochrome b-561	BC006732|Cyb561|13056|cytochrome b-561	AK158978|Cyb561|13056|cytochrome b-561
mm9_v1_chr3_+_134944239_134944255	0.112472	CTCF.p2	BC036998|Bdh2|69772|3-hydroxybutyrate dehydrogenase, type 2
mm9_v1_chr2_-_165980462_165980784	0.111526	CTCF.p2	AK129316|Sulf2|72043|sulfatase 2
mm9_v1_chr17_-_25411224_25411258	0.111215	CTCF.p2	AK005058|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK088508|Ube2i|22196|ubiquitin-conjugating enzyme E2I	U94402|Ube2i|22196|ubiquitin-conjugating enzyme E2I	NM_011665|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr8_+_62984911_62984927	0.110107	CTCF.p2	AK075578|Aadat|23923|aminoadipate aminotransferase	AF072376|Aadat|23923|aminoadipate aminotransferase	NM_011834|Aadat|23923|aminoadipate aminotransferase	BC012637|Aadat|23923|aminoadipate aminotransferase
mm9_v1_chr7_-_4610179_4610267	0.109898	CTCF.p2	BC141039|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr13_-_8870231_8870293	0.109448	CTCF.p2	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr11_+_83286587_83286623	0.109437	CTCF.p2	AK011843|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK078205|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK051568|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_027427|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK166550|Taf15|70439|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr17_+_43938887_43938898	0.109407	CTCF.p2	AK138768|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr16_+_3908975_3909105	0.108269	CTCF.p2	BC024910|Cluap1|76779|clusterin associated protein 1	NM_029738|Cluap1|76779|clusterin associated protein 1	AK009540|Cluap1|76779|clusterin associated protein 1	AK134648|Cluap1|76779|clusterin associated protein 1	AK166050|Cluap1|76779|clusterin associated protein 1	AK011846|Cluap1|76779|clusterin associated protein 1
mm9_v1_chr11_-_51398152_51398172	0.108252	CTCF.p2	
mm9_v1_chr6_+_134591028_134591136	0.108044	CTCF.p2	AK018019|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK169615|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK151342|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK089648|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	AK007423|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr4_-_57156490_57156519	0.108013	CTCF.p2	AB032366|Epb4.1l4b|54357|erythrocyte protein band 4.1-like 4b
mm9_v1_chr3_-_107746550_107746666	0.106657	CTCF.p2	AJ000413|Gstm6|14867|glutathione S-transferase, mu 6	BC031818|Gstm6|14867|glutathione S-transferase, mu 6	AK015265|Gstm6|14867|glutathione S-transferase, mu 6	NM_008184|Gstm6|14867|glutathione S-transferase, mu 6
mm9_v1_chr2_+_172825651_172825682	0.106152	CTCF.p2	AK146058|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK156681|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK014325|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK035278|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr17_+_28046196_28046431	0.105733	CTCF.p2	BC050847|Anks1|224650|ankyrin repeat and SAM domain containing 1	NM_181413|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK129094|Anks1|224650|ankyrin repeat and SAM domain containing 1	AK147273|Anks1|224650|ankyrin repeat and SAM domain containing 1
mm9_v1_chr7_-_134404120_134404235	0.10545	CTCF.p2	AK010606|Dctpp1|66422|dCTP pyrophosphatase 1	AK003643|Dctpp1|66422|dCTP pyrophosphatase 1	AK010508|Dctpp1|66422|dCTP pyrophosphatase 1	AF110764|Dctpp1|66422|dCTP pyrophosphatase 1	NM_023203|Dctpp1|66422|dCTP pyrophosphatase 1	BC004623|Dctpp1|66422|dCTP pyrophosphatase 1
mm9_v1_chr7_-_28835041_28835115	0.105393	CTCF.p2	BC012708|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK167041|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	BC092265|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	L76223|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK150989|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK160718|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK167528|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK169224|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK077507|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK160644|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK169244|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK050677|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK153991|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	NM_011874|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4
mm9_v1_chr16_+_20097626_20097705	0.104638	CTCF.p2	NM_029436|Klhl24|75785|kelch-like 24 (Drosophila)	AK015239|Klhl24|75785|kelch-like 24 (Drosophila)	AK044892|Klhl24|75785|kelch-like 24 (Drosophila)
mm9_v1_chr12_-_81233799_81233831	0.104592	CTCF.p2	AK053779|2310015A10Rik|69548|RIKEN cDNA 2310015A10 gene	AK160272|2310015A10Rik|69548|RIKEN cDNA 2310015A10 gene
mm9_v1_chr11_-_120442851_120442887	0.104568	CTCF.p2	BC086755|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	BC004732|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK156819|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK172140|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr10_+_92623587_92623703	0.104086	CTCF.p2	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr12_+_8320219_8320268	0.103753	CTCF.p2	AK040654|Hs1bp3|58240|HCLS1 binding protein 3	NM_021429|Hs1bp3|58240|HCLS1 binding protein 3	AK154696|Hs1bp3|58240|HCLS1 binding protein 3	AK084802|Hs1bp3|58240|HCLS1 binding protein 3	AK170838|Hs1bp3|58240|HCLS1 binding protein 3	BC095977|Hs1bp3|58240|HCLS1 binding protein 3	AJ132192|Hs1bp3|58240|HCLS1 binding protein 3
mm9_v1_chr6_+_124462638_124462669	0.103495	CTCF.p2	NM_023143|C1ra|50909|complement component 1, r subcomponent A	AF148216|C1ra|50909|complement component 1, r subcomponent A
mm9_v1_chr5_-_125914417_125914513	0.103307	CTCF.p2	BC066077|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	NM_203319|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	BC080298|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37	AK148257|Dhx37|208144|DEAH (Asp-Glu-Ala-His) box polypeptide 37
mm9_v1_chr18_-_15222079_15222098	0.100064	CTCF.p2	NM_001142731|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr17_-_25073897_25073943	0.0999449	CTCF.p2	BC068312|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB005662|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF262046|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178637|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC065105|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163447|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163448|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163449|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163450|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163451|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163453|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_013931|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr7_+_128061257_128061281	0.0985069	CTCF.p2	AK005034|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_001164096|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	NM_025298|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr11_-_4965279_4965341	0.0978105	CTCF.p2	BC031785|Gas2l1|78926|growth arrest-specific 2 like 1	AK082864|Gas2l1|78926|growth arrest-specific 2 like 1	AK019661|Gas2l1|78926|growth arrest-specific 2 like 1	AK052229|Gas2l1|78926|growth arrest-specific 2 like 1	NM_001190406|Gas2l1|78926|growth arrest-specific 2 like 1	NM_001190408|Gas2l1|78926|growth arrest-specific 2 like 1	NM_030228|Gas2l1|78926|growth arrest-specific 2 like 1	NM_144560|Gas2l1|78926|growth arrest-specific 2 like 1
mm9_v1_chr1_-_79855177_79855208	0.0967317	CTCF.p2	BC010675|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr7_+_107376116_107376219	0.0952161	CTCF.p2	NM_027629|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK039189|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK040513|Pgm2l1|70974|phosphoglucomutase 2-like 1	BC076571|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr4_+_124479785_124479853	0.0947933	CTCF.p2	AK150295|Mtf1|17764|metal response element binding transcription factor 1	NM_008636|Mtf1|17764|metal response element binding transcription factor 1	AK030284|Mtf1|17764|metal response element binding transcription factor 1	AK012676|Mtf1|17764|metal response element binding transcription factor 1	X71327|Mtf1|17764|metal response element binding transcription factor 1	BC017679|Mtf1|17764|metal response element binding transcription factor 1
mm9_v1_chr6_-_83725683_83725774	0.0946904	CTCF.p2	AK185442|Tex261|21766|testis expressed gene 261	AK201329|Tex261|21766|testis expressed gene 261	BC003802|Tex261|21766|testis expressed gene 261	X80426|Tex261|21766|testis expressed gene 261	X81058|Tex261|21766|testis expressed gene 261	AK149789|Tex261|21766|testis expressed gene 261
mm9_v1_chr1_-_162142846_162143024	0.0942175	CTCF.p2	U97327|Cacybp|12301|calcyclin binding protein	AK089043|Cacybp|12301|calcyclin binding protein	AK177869|Cacybp|12301|calcyclin binding protein	BC025948|Cacybp|12301|calcyclin binding protein	NM_009786|Cacybp|12301|calcyclin binding protein	AK013924|Cacybp|12301|calcyclin binding protein	AK145013|Cacybp|12301|calcyclin binding protein
mm9_v1_chr11_+_119352660_119352688	0.0939035	CTCF.p2	AK084233|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	NM_001164636|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene	AK084548|A730011L01Rik|338371|RIKEN cDNA A730011L01 gene
mm9_v1_chr19_-_3912772_3912783	0.093901	CTCF.p2	AK135069|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8
mm9_v1_chr19_+_6401701_6401708	0.0929052	CTCF.p2	BC051474|Rasgrp2|19395|RAS, guanyl releasing protein 2
mm9_v1_chr17_-_31992708_31992780	0.0923691	CTCF.p2	U11494|Sik1|17691|salt inducible kinase 1	AK141817|Sik1|17691|salt inducible kinase 1	NM_010831|Sik1|17691|salt inducible kinase 1	AK172427|Sik1|17691|salt inducible kinase 1
mm9_v1_chr1_-_33871218_33871259	0.0921913	CTCF.p2	BC062154|Zfp451|98403|zinc finger protein 451
mm9_v1_chr18_-_16967754_16967859	0.0920565	CTCF.p2	AK146981|Cdh2|12558|cadherin 2
mm9_v1_chr2_+_4638844_4638934	0.0917602	CTCF.p2	AK053896|Bend7|209645|BEN domain containing 7	NM_001190400|Bend7|209645|BEN domain containing 7	NM_178663|Bend7|209645|BEN domain containing 7	AK042822|Bend7|209645|BEN domain containing 7
mm9_v1_chr19_+_4000579_4000658	0.0916963	CTCF.p2	AK045197|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	NM_025529|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	BC056443|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	AK170076|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	AK002605|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8	AK009700|Nudt8|66387|nudix (nucleoside diphosphate linked moiety X)-type motif 8
mm9_v1_chr7_+_4071171_4071355	0.0904987	CTCF.p2	AF190699|Ttyh1|57776|tweety homolog 1 (Drosophila)	AF190991|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK081981|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK048413|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC065694|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK018148|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC046310|Ttyh1|57776|tweety homolog 1 (Drosophila)	AB162929|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK042758|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr1_+_137029275_137029304	0.0901961	CTCF.p2	AK083305|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7	NM_177081|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7
mm9_v1_chr14_+_29318658_29318741	0.0894738	CTCF.p2	NM_009524|Wnt5a|22418|wingless-related MMTV integration site 5A	AK031597|Wnt5a|22418|wingless-related MMTV integration site 5A	M89798|Wnt5a|22418|wingless-related MMTV integration site 5A
mm9_v1_chr4_+_100741586_100741642	0.0894129	CTCF.p2	AK040404|Raver2|242570|ribonucleoprotein, PTB-binding 2	BC055329|Raver2|242570|ribonucleoprotein, PTB-binding 2	NM_183024|Raver2|242570|ribonucleoprotein, PTB-binding 2
mm9_v1_chr1_-_173177243_173177273	0.0886599	CTCF.p2	AK146269|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chr10_-_80522871_80522963	0.088622	CTCF.p2	AK039966|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	BC003836|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	NM_024499|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK051005|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK079168|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK165557|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr14_-_76410654_76410753	0.0881491	CTCF.p2	BC027173|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	AK144858|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	NM_026816|Gtf2f2|68705|general transcription factor IIF, polypeptide 2
mm9_v1_chr19_+_44637331_44637363	0.0881115	CTCF.p2	AK154774|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	BC130013|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	NM_176958|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK084960|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK043636|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor	AK141867|Hif1an|319594|hypoxia-inducible factor 1, alpha subunit inhibitor
mm9_v1_chr18_-_64648748_64648758	0.0872074	CTCF.p2	AK159652|Fech|14151|ferrochelatase
mm9_v1_chr4_-_140616455_140616494	0.0868491	CTCF.p2	NM_001145958|Crocc|230872|ciliary rootlet coiled-coil, rootletin
mm9_v1_chr19_+_42245078_42245100	0.086652	CTCF.p2	BC024801|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK159065|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK170237|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr12_+_113384418_113384445	0.0863149	CTCF.p2	NM_001097621|Kif26a|668303|kinesin family member 26A
mm9_v1_chr12_-_113912266_113912513	0.0862801	CTCF.p2	AK154936|Akt1|11651|thymoma viral proto-oncogene 1	AK040758|Akt1|11651|thymoma viral proto-oncogene 1	X65687|Akt1|11651|thymoma viral proto-oncogene 1	BC066018|Akt1|11651|thymoma viral proto-oncogene 1	NM_001165894|Akt1|11651|thymoma viral proto-oncogene 1	NM_009652|Akt1|11651|thymoma viral proto-oncogene 1
mm9_v1_chr8_-_19892900_19893049	0.0832262	CTCF.p2	AK036306|2610005L07Rik|381598|cadherin 11 pseudogene	AK135487|6820431F20Rik|547150|cadherin 11 pseudogene	BC064022|2610005L07Rik|381598|cadherin 11 pseudogene	AK033345|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK170069|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK083828|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK012880|2610005L07Rik|381598|cadherin 11 pseudogene	AK167066|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK132389|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr10_-_75236129_75236158	0.0825735	CTCF.p2	AK144193|Ddt|13202|D-dopachrome tautomerase
mm9_v1_chr17_+_43938905_43938991	0.0824965	CTCF.p2	AK136805|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr8_+_89996675_89996716	0.0821359	CTCF.p2	AK135135|Gm2694|100040294|predicted gene 2694	AK137304|Gm2694|100040294|predicted gene 2694
mm9_v1_chr2_-_118199046_118199154	0.0818868	CTCF.p2	BC052037|Gpr176|381413|G protein-coupled receptor 176	NM_201367|Gpr176|381413|G protein-coupled receptor 176
mm9_v1_chr2_-_177183009_177183079	0.081555	CTCF.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr7_-_7230911_7230973	0.0812388	CTCF.p2	AK046541|Vmn2r29|76229|vomeronasal 2, receptor 29	AK084962|Vmn2r29|76229|vomeronasal 2, receptor 29	BC096375|Vmn2r29|76229|vomeronasal 2, receptor 29	AK018294|Vmn2r29|76229|vomeronasal 2, receptor 29
mm9_v1_chr7_+_111392998_111393087	0.0808313	CTCF.p2	AK171840|Trim34a|94094|tripartite motif-containing 34A	AK172135|Trim34a|94094|tripartite motif-containing 34A	AF220139|Trim34a|94094|tripartite motif-containing 34A
mm9_v1_chrX_+_19636666_19636695	0.0805226	CTCF.p2	AK011202|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	AB040710|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	AB046929|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	NM_021715|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7
mm9_v1_chrX_-_154481213_154481299	0.0803514	CTCF.p2	
mm9_v1_chr15_-_82184631_82184726	0.0801407	CTCF.p2	AK002749|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK010988|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK012328|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	BC048451|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	NM_025987|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm9_v1_chr6_+_134590957_134591017	0.0799543	CTCF.p2	NM_026371|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)	BC023059|Loh12cr1|67774|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm9_v1_chr5_+_23900197_23900242	0.0793663	CTCF.p2	AK014688|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK076315|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK049152|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK166704|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK170334|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK014319|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK030624|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8	AK038760|Abcb8|74610|ATP-binding cassette, sub-family B (MDR/TAP), member 8
mm9_v1_chr5_+_33760994_33761117	0.0792046	CTCF.p2	AK084585|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK163728|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr2_-_11524766_11524903	0.078833	CTCF.p2	AK012296|Rbm17|76938|RNA binding motif protein 17	BC034896|Rbm17|76938|RNA binding motif protein 17	NM_152824|Rbm17|76938|RNA binding motif protein 17
mm9_v1_chr1_+_74379182_74379257	0.078818	CTCF.p2	AB041609|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	NM_019999|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK086034|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK158483|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK041238|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia
mm9_v1_chr11_-_107050573_107050694	0.0786049	CTCF.p2	BC024874|Nol11|68979|nucleolar protein 11	AK005123|Nol11|68979|nucleolar protein 11	AK038696|Nol11|68979|nucleolar protein 11	AK078524|Nol11|68979|nucleolar protein 11	AK157743|Nol11|68979|nucleolar protein 11	AK076704|Nol11|68979|nucleolar protein 11	NM_001161329|Nol11|68979|nucleolar protein 11	NM_133702|Nol11|68979|nucleolar protein 11
mm9_v1_chr19_+_57435735_57435759	0.0778778	CTCF.p2	BC062949|Fam160b1|226252|family with sequence similarity 160, member B1
mm9_v1_chr12_-_36768992_36769002	0.0774789	CTCF.p2	AK008175|Tspan13|66109|tetraspanin 13
mm9_v1_chr5_+_151476361_151476427	0.0769665	CTCF.p2	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr11_+_43247252_43247280	0.0753384	CTCF.p2	BC082780|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC025870|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK046262|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK029117|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	AK049178|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	BC060954|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr11_+_114530028_114530110	0.0750793	CTCF.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr13_-_55637866_55638018	0.0749083	CTCF.p2	BC011308|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	BC023711|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK156957|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK168043|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK151427|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	AK013586|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	NM_134059|Ddx41|72935|DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
mm9_v1_chr7_+_74367429_74367537	0.0741635	CTCF.p2	AK015716|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	NM_175215|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	AK172203|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	AK033681|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	BC030310|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	AK039294|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	AK143241|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	NM_001191051|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4	BC094328|Lysmd4|75099|LysM, putative peptidoglycan-binding, domain containing 4
mm9_v1_chr2_+_164704883_164704976	0.0725478	CTCF.p2	BC060988|Pcif1|228866|PDX1 C-terminal inhibiting factor 1	BC031431|Pcif1|228866|PDX1 C-terminal inhibiting factor 1	AK009480|Pcif1|228866|PDX1 C-terminal inhibiting factor 1	AK150740|Pcif1|228866|PDX1 C-terminal inhibiting factor 1
mm9_v1_chr10_-_18735154_18735215	0.0723348	CTCF.p2	AK153238|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK088297|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK151921|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC050259|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC054806|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC060221|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_009397|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr12_+_112088488_112088532	0.0721573	CTCF.p2	BC150732|Zfp839|72805|zinc finger protein 839	NM_028365|Zfp839|72805|zinc finger protein 839	AK013356|Zfp839|72805|zinc finger protein 839
mm9_v1_chr7_-_30066642_30066696	0.0720783	CTCF.p2	AK007792|Spint2|20733|serine protease inhibitor, Kunitz type 2
mm9_v1_chr7_-_52689833_52689978	0.0719501	CTCF.p2	AK159112|Ruvbl2|20174|RuvB-like protein 2	NM_011304|Ruvbl2|20174|RuvB-like protein 2
mm9_v1_chr13_-_47110187_47110218	0.0716004	CTCF.p2	BC062644|Nhlrc1|105193|NHL repeat containing 1	BC118952|Nhlrc1|105193|NHL repeat containing 1	AK045746|Nhlrc1|105193|NHL repeat containing 1	BC118951|Nhlrc1|105193|NHL repeat containing 1	NM_175340|Nhlrc1|105193|NHL repeat containing 1
mm9_v1_chr2_-_17653057_17653112	0.0710818	CTCF.p2	AK077332|Nebl|74103|nebulette
mm9_v1_chr3_-_142544883_142544984	0.0710764	CTCF.p2	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr12_-_114238614_114238662	0.0707655	CTCF.p2	BC037224|Brf1|72308|BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
mm9_v1_chr10_-_19627418_19627496	0.0707458	CTCF.p2	AK160195|Pex7|18634|peroxisomal biogenesis factor 7	BC132213|Pex7|18634|peroxisomal biogenesis factor 7	BC132503|Pex7|18634|peroxisomal biogenesis factor 7	BC145300|Pex7|18634|peroxisomal biogenesis factor 7	U69171|Pex7|18634|peroxisomal biogenesis factor 7	AK053868|Pex7|18634|peroxisomal biogenesis factor 7	AK004687|Pex7|18634|peroxisomal biogenesis factor 7	NM_001161825|Pex7|18634|peroxisomal biogenesis factor 7	NM_008822|Pex7|18634|peroxisomal biogenesis factor 7
mm9_v1_chr15_-_99200748_99200838	0.0706248	CTCF.p2	BC131961|Fmnl3|22379|formin-like 3	BC085094|Fmnl3|22379|formin-like 3	AK143308|Fmnl3|22379|formin-like 3	AK129473|Fmnl3|22379|formin-like 3
mm9_v1_chr11_-_54674080_54674223	0.0697005	CTCF.p2	NM_029327|Lyrm7|75530|LYR motif containing 7	BC139403|Lyrm7|75530|LYR motif containing 7	BC139406|Lyrm7|75530|LYR motif containing 7
mm9_v1_chr7_+_134614926_134615014	0.0695004	CTCF.p2	
mm9_v1_chr13_-_58228079_58228222	0.0694024	CTCF.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr8_+_93352723_93352742	0.0693718	CTCF.p2	AK034446|Chd9|109151|chromodomain helicase DNA binding protein 9	NM_177224|Chd9|109151|chromodomain helicase DNA binding protein 9	AK039562|Chd9|109151|chromodomain helicase DNA binding protein 9	DQ127229|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr1_-_36603970_36604088	0.06777	CTCF.p2	AK177190|Ankrd39|109346|ankyrin repeat domain 39	AK018681|Ankrd39|109346|ankyrin repeat domain 39	AK042896|Ankrd39|109346|ankyrin repeat domain 39	NM_026241|Ankrd39|109346|ankyrin repeat domain 39	AK160231|Ankrd39|109346|ankyrin repeat domain 39	AK081207|Ankrd39|109346|ankyrin repeat domain 39	AK030874|Ankrd39|109346|ankyrin repeat domain 39	AK158215|Ankrd39|109346|ankyrin repeat domain 39	BC117004|Ankrd39|109346|ankyrin repeat domain 39	BC119100|Ankrd39|109346|ankyrin repeat domain 39	BC144893|Ankrd39|109346|ankyrin repeat domain 39
mm9_v1_chr5_-_116102983_116102996	0.067552	CTCF.p2	AK170295|Ccdc64|75665|coiled-coil domain containing 64
mm9_v1_chr18_-_36675393_36675437	0.0669072	CTCF.p2	L07264|Hbegf|15200|heparin-binding EGF-like growth factor	AK145548|Hbegf|15200|heparin-binding EGF-like growth factor	AK160575|Hbegf|15200|heparin-binding EGF-like growth factor	BC089607|Hbegf|15200|heparin-binding EGF-like growth factor	AK052084|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr1_-_164670534_164670687	0.0666765	CTCF.p2	AK013732|Prrc2c|226562|proline-rich coiled-coil 2C	AK077748|Prrc2c|226562|proline-rich coiled-coil 2C	BC053406|Prrc2c|226562|proline-rich coiled-coil 2C	BC064009|Prrc2c|226562|proline-rich coiled-coil 2C	BC021412|Prrc2c|226562|proline-rich coiled-coil 2C	BC037745|Prrc2c|226562|proline-rich coiled-coil 2C	BC080672|Prrc2c|226562|proline-rich coiled-coil 2C	AK030766|Prrc2c|226562|proline-rich coiled-coil 2C	AK135245|Prrc2c|226562|proline-rich coiled-coil 2C	BC006723|Prrc2c|226562|proline-rich coiled-coil 2C	AK007762|Prrc2c|226562|proline-rich coiled-coil 2C	AK167018|Prrc2c|226562|proline-rich coiled-coil 2C	AK082487|Prrc2c|226562|proline-rich coiled-coil 2C	AK166509|Prrc2c|226562|proline-rich coiled-coil 2C	NM_001081290|Prrc2c|226562|proline-rich coiled-coil 2C
mm9_v1_chr11_-_116000068_116000132	0.0666541	CTCF.p2	BC002319|Mrpl38|60441|mitochondrial ribosomal protein L38	BC030739|Mrpl38|60441|mitochondrial ribosomal protein L38	AK088343|Mrpl38|60441|mitochondrial ribosomal protein L38	AK151598|Mrpl38|60441|mitochondrial ribosomal protein L38	AK010798|Mrpl38|60441|mitochondrial ribosomal protein L38
mm9_v1_chr18_-_64648683_64648745	0.0664009	CTCF.p2	AK083560|Fech|14151|ferrochelatase	BC094548|Fech|14151|ferrochelatase	M61215|Fech|14151|ferrochelatase	AK004718|Fech|14151|ferrochelatase	NM_007998|Fech|14151|ferrochelatase	AK018738|Fech|14151|ferrochelatase	AK150685|Fech|14151|ferrochelatase
mm9_v1_chr18_+_38456280_38456312	0.0654199	CTCF.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chr3_-_53267127_53267244	0.0643628	CTCF.p2	AK133986|Nhlrc3|212114|NHL repeat containing 3	BC087903|Nhlrc3|212114|NHL repeat containing 3	BC107356|Nhlrc3|212114|NHL repeat containing 3	AK029465|Nhlrc3|212114|NHL repeat containing 3	AK033167|Nhlrc3|212114|NHL repeat containing 3	NM_172501|Nhlrc3|212114|NHL repeat containing 3	AK162824|Nhlrc3|212114|NHL repeat containing 3	AK220477|Nhlrc3|212114|NHL repeat containing 3
mm9_v1_chr6_-_39327637_39327722	0.0637805	CTCF.p2	BC099673|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK076213|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK077836|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK167716|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	BC005744|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK145242|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	NM_028123|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm9_v1_chr2_+_90585682_90585813	0.0629309	CTCF.p2	AK014018|Fnbp4|55935|formin binding protein 4	AK012167|Fnbp4|55935|formin binding protein 4	AK084018|Fnbp4|55935|formin binding protein 4	AK164543|Fnbp4|55935|formin binding protein 4
mm9_v1_chr11_+_12214515_12214517	0.0627451	CTCF.p2	AK040873|LOC100503630|100503630|hypothetical LOC100503630
mm9_v1_chr5_+_108329554_108329638	0.0624657	CTCF.p2	AK013107|Rpl5|100503670|ribosomal protein L5	AK032778|Rpl5|100503670|ribosomal protein L5	AK152381|Rpl5|100503670|ribosomal protein L5	AK008489|Rpl5|100503670|ribosomal protein L5	AK169313|Rpl5|100503670|ribosomal protein L5	AK088036|Rpl5|100503670|ribosomal protein L5	BC005790|Rpl5|100503670|ribosomal protein L5	BC083318|Rpl5|100503670|ribosomal protein L5	BC026934|Rpl5|100503670|ribosomal protein L5	BC091752|Rpl5|100503670|ribosomal protein L5	NM_016980|Rpl5|100503670|ribosomal protein L5	AK166865|Rpl5|100503670|ribosomal protein L5	BC106128|Rpl5|100503670|ribosomal protein L5
mm9_v1_chr9_-_60535699_60535786	0.0617637	CTCF.p2	BC016574|Lrrc49|102747|leucine rich repeat containing 49	AK041627|Lrrc49|102747|leucine rich repeat containing 49	AK049268|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr7_+_17659388_17659431	0.0615917	CTCF.p2	BC030357|Psg16|26436|pregnancy specific glycoprotein 16	NM_007676|Psg16|26436|pregnancy specific glycoprotein 16	U34272|Psg16|26436|pregnancy specific glycoprotein 16
mm9_v1_chr15_-_72640341_72640463	0.0614387	CTCF.p2	AK158316|Peg13|353342|paternally expressed 13	AK154204|Peg13|353342|paternally expressed 13	AY151253|Peg13|353342|paternally expressed 13
mm9_v1_chr2_+_119114464_119114567	0.0612989	CTCF.p2	AK044821|Vps18|228545|vacuolar protein sorting 18 (yeast)	NM_172269|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK148077|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK033277|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK033333|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK036915|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK039848|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK160689|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK029109|Vps18|228545|vacuolar protein sorting 18 (yeast)	AK042471|Vps18|228545|vacuolar protein sorting 18 (yeast)	BC036129|Vps18|228545|vacuolar protein sorting 18 (yeast)	BC039176|Vps18|228545|vacuolar protein sorting 18 (yeast)
mm9_v1_chr2_+_126834431_126834485	0.0606144	CTCF.p2	NM_175550|Ap4e1|108011|adaptor-related protein complex AP-4, epsilon 1	AK143351|Ap4e1|108011|adaptor-related protein complex AP-4, epsilon 1	AK163701|Ap4e1|108011|adaptor-related protein complex AP-4, epsilon 1	AK039257|Ap4e1|108011|adaptor-related protein complex AP-4, epsilon 1	AK036944|Ap4e1|108011|adaptor-related protein complex AP-4, epsilon 1	AK144636|Ap4e1|108011|adaptor-related protein complex AP-4, epsilon 1
mm9_v1_chr8_-_19893102_19893120	0.0603999	CTCF.p2	AK030539|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK088897|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr5_-_5749270_5749396	0.0599509	CTCF.p2	AK144312|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	AY029584|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	BC061023|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	AK010437|Steap1|70358|six transmembrane epithelial antigen of the prostate 1	NM_027399|Steap1|70358|six transmembrane epithelial antigen of the prostate 1
mm9_v1_chr4_-_135129534_135129534	0.0596173	CTCF.p2	BC089372|Grhl3|230824|grainyhead-like 3 (Drosophila)	NM_001013756|Grhl3|230824|grainyhead-like 3 (Drosophila)
mm9_v1_chr11_+_4035162_4035238	0.0595392	CTCF.p2	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr9_+_100543993_100544033	0.0594774	CTCF.p2	Z75332|Stag1|20842|stromal antigen 1	AK134316|Stag1|20842|stromal antigen 1
mm9_v1_chr9_+_111341538_111341596	0.0592363	CTCF.p2	NM_172928|Dclk3|245038|doublecortin-like kinase 3	AK135010|Dclk3|245038|doublecortin-like kinase 3
mm9_v1_chr2_+_172825609_172825642	0.0583551	CTCF.p2	BC060072|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK079383|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	NM_175112|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr2_+_29475234_29475393	0.0580838	CTCF.p2	AK147468|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147470|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039086|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_001039087|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	NM_054050|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147696|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AK147506|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1	AF348669|Rapgef1|107746|Rap guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr15_+_102300972_102301062	0.0579584	CTCF.p2	NM_001103165|Pcbp2|18521|poly(rC) binding protein 2	NM_001103166|Pcbp2|18521|poly(rC) binding protein 2	NM_001174073|Pcbp2|18521|poly(rC) binding protein 2	NM_011042|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr7_+_128061297_128061331	0.0570162	CTCF.p2	AK012184|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK144721|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK146279|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	AK159723|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC037637|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E	BC028924|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr1_-_38186482_38186550	0.0566511	CTCF.p2	BC058093|Rev1|56210|REV1 homolog (S. cerevisiae)	NM_019570|Rev1|56210|REV1 homolog (S. cerevisiae)	AK048838|Rev1|56210|REV1 homolog (S. cerevisiae)
mm9_v1_chr12_+_77866520_77866582	0.0564545	CTCF.p2	AK085076|Churc1|211151|churchill domain containing 1	BC076499|Churc1|211151|churchill domain containing 1	NM_206534|Churc1|211151|churchill domain containing 1	BC019472|Churc1|211151|churchill domain containing 1
mm9_v1_chr8_+_89997055_89997060	0.0562104	CTCF.p2	AK082312|C230036H16Rik|434335|RIKEN cDNA C230036H16 gene
mm9_v1_chrX_+_155970593_155970627	0.0559886	CTCF.p2	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr17_-_26227187_26227280	0.0555998	CTCF.p2	AK149270|Decr2|26378|2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	AK162961|Decr2|26378|2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
mm9_v1_chr14_+_8912826_8912868	0.0543052	CTCF.p2	NM_025938|Rpp14|67053|ribonuclease P 14 subunit (human)
mm9_v1_chr14_+_66915902_66915902	0.0541499	CTCF.p2	AK003000|Trim35|66854|tripartite motif-containing 35	AK020775|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr12_+_34114475_34114519	0.0540783	CTCF.p2	AK010829|Twistnb|28071|TWIST neighbor	NM_172253|Twistnb|28071|TWIST neighbor	AK016638|Twistnb|28071|TWIST neighbor	AK017016|Twistnb|28071|TWIST neighbor	AK153090|Twistnb|28071|TWIST neighbor	AK160682|Twistnb|28071|TWIST neighbor	BC139162|Twistnb|28071|TWIST neighbor	BC139163|Twistnb|28071|TWIST neighbor	AK017810|Twistnb|28071|TWIST neighbor	AK008677|Twistnb|28071|TWIST neighbor	BC082580|Twistnb|28071|TWIST neighbor
mm9_v1_chr3_-_51129908_51129958	0.0537382	CTCF.p2	AF256216|Elf2|69257|E74-like factor 2	AF256217|Elf2|69257|E74-like factor 2	NM_023502|Elf2|69257|E74-like factor 2	BC092057|Elf2|69257|E74-like factor 2
mm9_v1_chr1_+_196446006_196446022	0.0536599	CTCF.p2	NM_008882|Plxna2|18845|plexin A2
mm9_v1_chr7_-_16807341_16807387	0.0535862	CTCF.p2	BC080856|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK129062|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	AK004733|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34	NM_027883|Dhx34|71723|DEAH (Asp-Glu-Ala-His) box polypeptide 34
mm9_v1_chr2_-_121180807_121180816	0.0535422	CTCF.p2	AK078268|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK162596|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK046696|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr1_-_79855229_79855247	0.0532671	CTCF.p2	NM_009255|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr2_+_121239658_121239718	0.0531775	CTCF.p2	AK132459|Pdia3|14827|protein disulfide isomerase associated 3	AK088721|Pdia3|14827|protein disulfide isomerase associated 3	AK133799|Pdia3|14827|protein disulfide isomerase associated 3	AK167807|Pdia3|14827|protein disulfide isomerase associated 3	AK169611|Pdia3|14827|protein disulfide isomerase associated 3	M73329|Pdia3|14827|protein disulfide isomerase associated 3	BC003285|Pdia3|14827|protein disulfide isomerase associated 3
mm9_v1_chr4_-_134989653_134989790	0.0531345	CTCF.p2	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr11_-_62462024_62462096	0.053087	CTCF.p2	BC053455|BC046404|192976|cDNA sequence BC046404	NM_198861|BC046404|192976|cDNA sequence BC046404
mm9_v1_chr18_-_66451420_66451491	0.0530236	CTCF.p2	AK039742|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC103803|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC152322|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK220435|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK035153|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK028377|Ccbe1|320924|collagen and calcium binding EGF domains 1	NM_178793|Ccbe1|320924|collagen and calcium binding EGF domains 1
mm9_v1_chr4_+_128331945_128331981	0.0529881	CTCF.p2	NM_001195130|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr11_+_43247209_43247232	0.0527369	CTCF.p2	NM_148673|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)	NM_198936|Slu7|193116|SLU7 splicing factor homolog (S. cerevisiae)
mm9_v1_chr6_-_34827999_34828064	0.0525787	CTCF.p2	AK019439|3110062M04Rik|78412|RIKEN cDNA 3110062M04 gene	BC029235|3110062M04Rik|78412|RIKEN cDNA 3110062M04 gene	AK042380|3110062M04Rik|78412|RIKEN cDNA 3110062M04 gene	AK083365|3110062M04Rik|78412|RIKEN cDNA 3110062M04 gene	AK170119|3110062M04Rik|78412|RIKEN cDNA 3110062M04 gene	NM_001135611|3110062M04Rik|78412|RIKEN cDNA 3110062M04 gene	NM_199145|3110062M04Rik|78412|RIKEN cDNA 3110062M04 gene
mm9_v1_chr1_-_36301093_36301156	0.0525402	CTCF.p2	BC062936|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	BC068283|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	AK050532|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1	NM_198899|Uggt1|320011|UDP-glucose glycoprotein glucosyltransferase 1
mm9_v1_chr14_-_21212709_21212791	0.0524611	CTCF.p2	AK019243|Mrps16|66242|mitochondrial ribosomal protein S16	BC024656|Mrps16|66242|mitochondrial ribosomal protein S16	AK005206|Mrps16|66242|mitochondrial ribosomal protein S16	NM_025440|Mrps16|66242|mitochondrial ribosomal protein S16
mm9_v1_chr11_-_59623089_59623359	0.0517617	CTCF.p2	AK136071|Flcn|216805|folliculin	BC025820|Flcn|216805|folliculin	NM_146018|Flcn|216805|folliculin	AK148216|Flcn|216805|folliculin	AK161460|Flcn|216805|folliculin	AK039106|Flcn|216805|folliculin	AK080933|Flcn|216805|folliculin	AK172245|Flcn|216805|folliculin
mm9_v1_chr8_-_27104573_27104612	0.0516513	CTCF.p2	BC027296|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK015374|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK032677|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK043620|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK170994|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	NM_029037|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK160873|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK036348|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene	AK138952|4930444A02Rik|74653|RIKEN cDNA 4930444A02 gene
mm9_v1_chr7_+_16894925_16895103	0.0516328	CTCF.p2	NM_133234|Bbc3|170770|BCL2 binding component 3	BC044782|Bbc3|170770|BCL2 binding component 3	AF332560|Bbc3|170770|BCL2 binding component 3	BC060370|Bbc3|170770|BCL2 binding component 3	BC147261|Bbc3|170770|BCL2 binding component 3	BC147262|Bbc3|170770|BCL2 binding component 3
mm9_v1_chr16_-_20425991_20426058	0.0515926	CTCF.p2	AK050565|Abcc5|27416|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm9_v1_chr15_-_94420206_94420335	0.0511991	CTCF.p2	AY267188|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK193163|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK147990|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC094034|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	NM_008971|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	U82324|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC015081|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168142|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168161|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK150852|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK077410|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)
mm9_v1_chr16_+_72663393_72663448	0.0509681	CTCF.p2	AK138485|Robo1|19876|roundabout homolog 1 (Drosophila)	AK143001|Robo1|19876|roundabout homolog 1 (Drosophila)	NM_019413|Robo1|19876|roundabout homolog 1 (Drosophila)	AK032752|Robo1|19876|roundabout homolog 1 (Drosophila)	AK142047|Robo1|19876|roundabout homolog 1 (Drosophila)
mm9_v1_chrX_+_97963061_97963090	0.0508774	CTCF.p2	AK122474|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_001177778|Dlg3|53310|discs, large homolog 3 (Drosophila)	BC094368|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_016747|Dlg3|53310|discs, large homolog 3 (Drosophila)	D87117|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chrX_-_70704286_70704406	0.0508254	CTCF.p2	AK050729|Haus7|73738|HAUS augmin-like complex, subunit 7	BC025464|Haus7|73738|HAUS augmin-like complex, subunit 7	AY029337|Haus7|73738|HAUS augmin-like complex, subunit 7	NM_028633|Haus7|73738|HAUS augmin-like complex, subunit 7	NM_207104|Haus7|73738|HAUS augmin-like complex, subunit 7
mm9_v1_chr2_+_172825687_172825696	0.0505176	CTCF.p2	BC059051|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK017746|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr9_-_44169716_44169758	0.0497324	CTCF.p2	AK032484|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK047228|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK153963|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK037658|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK162897|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK004695|Vps11|71732|vacuolar protein sorting 11 (yeast)	AK090030|Vps11|71732|vacuolar protein sorting 11 (yeast)	BC029004|Vps11|71732|vacuolar protein sorting 11 (yeast)	NM_027889|Vps11|71732|vacuolar protein sorting 11 (yeast)
mm9_v1_chr15_+_97077537_97077537	0.049717	CTCF.p2	AK051480|Fam113b|239647|family with sequence similarity 113, member B	NM_172293|Fam113b|239647|family with sequence similarity 113, member B
mm9_v1_chr15_-_76437917_76438021	0.049609	CTCF.p2	BC049941|Cpsf1|94230|cleavage and polyadenylation specific factor 1	AK155806|Cpsf1|94230|cleavage and polyadenylation specific factor 1	AK155648|Cpsf1|94230|cleavage and polyadenylation specific factor 1	AF322193|Cpsf1|94230|cleavage and polyadenylation specific factor 1	BC056388|Cpsf1|94230|cleavage and polyadenylation specific factor 1	NM_001164173|Cpsf1|94230|cleavage and polyadenylation specific factor 1	NM_053193|Cpsf1|94230|cleavage and polyadenylation specific factor 1
mm9_v1_chr9_-_45714921_45714956	0.0486269	CTCF.p2	AK028768|Rnf214|235315|ring finger protein 214	AK046190|Rnf214|235315|ring finger protein 214	BC049909|Rnf214|235315|ring finger protein 214
mm9_v1_chr6_+_124881437_124881453	0.048576	CTCF.p2	AK141241|Mlf2|30853|myeloid leukemia factor 2	AK143972|Mlf2|30853|myeloid leukemia factor 2
mm9_v1_chrX_-_133277456_133277461	0.0485112	CTCF.p2	NM_001168227|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr11_+_49715292_49715377	0.0483139	CTCF.p2	AK047088|Rasgef1c|74563|RasGEF domain family, member 1C	NM_029004|Rasgef1c|74563|RasGEF domain family, member 1C	AK018593|Rasgef1c|74563|RasGEF domain family, member 1C
mm9_v1_chr16_-_10395401_10395557	0.0480917	CTCF.p2	AK014352|Tekt5|70426|tektin 5	BC115969|Tekt5|70426|tektin 5	NM_001099275|Tekt5|70426|tektin 5	GQ292766|Tekt5|70426|tektin 5
mm9_v1_chr19_+_18787654_18787754	0.0472517	CTCF.p2	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chr2_+_25413360_25413471	0.0465827	CTCF.p2	AK003557|Edf1|59022|endothelial differentiation-related factor 1	AK002345|Edf1|59022|endothelial differentiation-related factor 1	AK010191|Edf1|59022|endothelial differentiation-related factor 1	AB030185|Edf1|59022|endothelial differentiation-related factor 1	NM_021519|Edf1|59022|endothelial differentiation-related factor 1	BC023472|Edf1|59022|endothelial differentiation-related factor 1	AJ309569|Edf1|59022|endothelial differentiation-related factor 1
mm9_v1_chr8_-_90885848_90885909	0.0462327	CTCF.p2	AK160638|Brd7|26992|bromodomain containing 7
mm9_v1_chrX_+_71516128_71516339	0.0460201	CTCF.p2	NM_052835|Rpl10|110954|ribosomal protein 10	AK146217|Rpl10|110954|ribosomal protein 10	AK011022|Rpl10|110954|ribosomal protein 10	AK088777|Rpl10|110954|ribosomal protein 10	AK144831|Rpl10|110954|ribosomal protein 10	AK151416|Rpl10|110954|ribosomal protein 10	AK151655|Rpl10|110954|ribosomal protein 10	AK152123|Rpl10|110954|ribosomal protein 10	AK152854|Rpl10|110954|ribosomal protein 10	AK153345|Rpl10|110954|ribosomal protein 10	AK160618|Rpl10|110954|ribosomal protein 10	AK167966|Rpl10|110954|ribosomal protein 10	AK168854|Rpl10|110954|ribosomal protein 10	BC086917|Rpl10|110954|ribosomal protein 10	M93980|Rpl10|110954|ribosomal protein 10	AK014054|Rpl10|110954|ribosomal protein 10	AK151736|Rpl10|110954|ribosomal protein 10	AK166610|Rpl10|110954|ribosomal protein 10	AK168250|Rpl10|110954|ribosomal protein 10	AK012561|Rpl10|110954|ribosomal protein 10	AK167239|Rpl10|110954|ribosomal protein 10	BC092383|Rpl10|110954|ribosomal protein 10	BC098204|Rpl10|110954|ribosomal protein 10	X75312|Rpl10|110954|ribosomal protein 10	BC048872|Rpl10|110954|ribosomal protein 10	BC099437|Rpl10|110954|ribosomal protein 10	BC024901|Rpl10|110954|ribosomal protein 10	BC082293|Rpl10|110954|ribosomal protein 10	BC083327|Rpl10|110954|ribosomal protein 10	BC006068|Rpl10|110954|ribosomal protein 10
mm9_v1_chr1_+_159342482_159342517	0.0458845	CTCF.p2	BC055845|2810025M15Rik|69953|RIKEN cDNA 2810025M15 gene
mm9_v1_chr11_-_82721859_82721896	0.0451108	CTCF.p2	BC018399|Nle1|217011|notchless homolog 1 (Drosophila)	BC035421|Nle1|217011|notchless homolog 1 (Drosophila)	AK170853|Nle1|217011|notchless homolog 1 (Drosophila)	AK141230|Nle1|217011|notchless homolog 1 (Drosophila)	NM_145431|Nle1|217011|notchless homolog 1 (Drosophila)
mm9_v1_chr17_-_71339826_71339901	0.0424583	CTCF.p2	BC099425|Myl12b|67938|myosin, light chain 12B, regulatory	BC131925|Myl12b|67938|myosin, light chain 12B, regulatory	BC131927|Myl12b|67938|myosin, light chain 12B, regulatory	BC028878|Myl12b|67938|myosin, light chain 12B, regulatory	AK002885|Myl12b|67938|myosin, light chain 12B, regulatory	AK168316|Myl12b|67938|myosin, light chain 12B, regulatory	NM_023402|Myl12b|67938|myosin, light chain 12B, regulatory	AK146115|Myl12b|67938|myosin, light chain 12B, regulatory	AK005133|Myl12b|67938|myosin, light chain 12B, regulatory	AK160123|Myl12b|67938|myosin, light chain 12B, regulatory
mm9_v1_chr5_-_144090853_144090920	0.0423332	CTCF.p2	AK156167|Zdhhc4|72881|zinc finger, DHHC domain containing 4	BC019523|Zdhhc4|72881|zinc finger, DHHC domain containing 4	AK013609|Zdhhc4|72881|zinc finger, DHHC domain containing 4	NM_028379|Zdhhc4|72881|zinc finger, DHHC domain containing 4
mm9_v1_chr10_-_31165691_31165726	0.0420851	CTCF.p2	AF004428|Tpd52l1|21987|tumor protein D52-like 1	NM_009413|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr5_-_121641282_121641449	0.0418252	CTCF.p2	D84372|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC057398|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC028513|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK011468|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK147354|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC059278|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159501|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159587|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_001109992|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_011202|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11
mm9_v1_chr9_+_46081146_46081375	0.041667	CTCF.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr6_+_83051509_83051651	0.0414267	CTCF.p2	NM_001081266|Ccdc142|243510|coiled-coil domain containing 142	AK038734|Ccdc142|243510|coiled-coil domain containing 142
mm9_v1_chr8_+_121970569_121970618	0.0413657	CTCF.p2	AF411253|Necab2|117148|N-terminal EF-hand calcium binding protein 2	NM_054095|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr3_-_146432922_146432972	0.0411054	CTCF.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr15_-_83180585_83180713	0.0410895	CTCF.p2	AK169107|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3	AK007732|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3	BC060369|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3	BC004081|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3	AK018680|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3	AK075788|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3	AK028990|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3	NM_025445|Arfgap3|66251|ADP-ribosylation factor GTPase activating protein 3
mm9_v1_chr18_-_81130721_81130824	0.0409522	CTCF.p2	BC057000|Atp9b|50771|ATPase, class II, type 9B	BC079626|Atp9b|50771|ATPase, class II, type 9B	AK044331|Atp9b|50771|ATPase, class II, type 9B	AK166562|Atp9b|50771|ATPase, class II, type 9B	NM_015805|Atp9b|50771|ATPase, class II, type 9B
mm9_v1_chr11_+_4537719_4537795	0.0406268	CTCF.p2	AK051387|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK048876|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK148105|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	BC013537|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	NM_029291|Ascc2|75452|activating signal cointegrator 1 complex subunit 2
mm9_v1_chr19_-_5098381_5098484	0.0397694	CTCF.p2	BC137585|Cnih2|12794|cornichon homolog 2 (Drosophila)	BC137586|Cnih2|12794|cornichon homolog 2 (Drosophila)	BC144739|Cnih2|12794|cornichon homolog 2 (Drosophila)	AB006191|Cnih2|12794|cornichon homolog 2 (Drosophila)	NM_009920|Cnih2|12794|cornichon homolog 2 (Drosophila)
mm9_v1_chr9_+_45715013_45715102	0.0395401	CTCF.p2	AK165389|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK151980|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	AK148416|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	BC007322|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	U48830|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr3_-_96512444_96512484	0.0395072	CTCF.p2	AK141256|Nudt17|78373|nudix (nucleoside diphosphate linked moiety X)-type motif 17	AK031193|Nudt17|78373|nudix (nucleoside diphosphate linked moiety X)-type motif 17	AK134929|Nudt17|78373|nudix (nucleoside diphosphate linked moiety X)-type motif 17	NM_001162925|Nudt17|78373|nudix (nucleoside diphosphate linked moiety X)-type motif 17	NM_030094|Nudt17|78373|nudix (nucleoside diphosphate linked moiety X)-type motif 17	AK019109|Nudt17|78373|nudix (nucleoside diphosphate linked moiety X)-type motif 17	BC115559|Nudt17|78373|nudix (nucleoside diphosphate linked moiety X)-type motif 17
mm9_v1_chr12_-_102267159_102267268	0.0393089	CTCF.p2	AY339881|Ccdc88c|68339|coiled-coil domain containing 88C	NM_026681|Ccdc88c|68339|coiled-coil domain containing 88C	BC043115|Ccdc88c|68339|coiled-coil domain containing 88C	BC063255|Ccdc88c|68339|coiled-coil domain containing 88C
mm9_v1_chr4_+_48552806_48552952	0.0390322	CTCF.p2	AK075956|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145925|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK017795|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK011381|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145924|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr7_-_72301074_72301128	0.0383881	CTCF.p2	AK172974|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr8_+_32222291_32222336	0.0382252	CTCF.p2	AK077856|Rnf122|68867|ring finger protein 122	AK171823|Rnf122|68867|ring finger protein 122	AK136206|Rnf122|68867|ring finger protein 122	AK162034|Rnf122|68867|ring finger protein 122	BC038399|Rnf122|68867|ring finger protein 122	NM_175136|Rnf122|68867|ring finger protein 122	AK085376|Rnf122|68867|ring finger protein 122
mm9_v1_chr11_+_117217937_117217967	0.0380462	CTCF.p2	AK211632|Sept9|53860|septin 9
mm9_v1_chr5_+_118619772_118619918	0.0378605	CTCF.p2	BC128022|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	D83698|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	NM_007545|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm9_v1_chr6_+_87837883_87838019	0.0376529	CTCF.p2	AK169256|Copg|54161|coatomer protein complex, subunit gamma	AK172519|Copg|54161|coatomer protein complex, subunit gamma	AK147895|Copg|54161|coatomer protein complex, subunit gamma	AK151284|Copg|54161|coatomer protein complex, subunit gamma	AK151816|Copg|54161|coatomer protein complex, subunit gamma	AK153142|Copg|54161|coatomer protein complex, subunit gamma	AF187079|Copg|54161|coatomer protein complex, subunit gamma	NM_017477|Copg|54161|coatomer protein complex, subunit gamma	AK171950|Copg|54161|coatomer protein complex, subunit gamma	AK080451|Copg|54161|coatomer protein complex, subunit gamma	BC024686|Copg|54161|coatomer protein complex, subunit gamma	AK164280|Copg|54161|coatomer protein complex, subunit gamma	BC024896|Copg|54161|coatomer protein complex, subunit gamma	BC056168|Copg|54161|coatomer protein complex, subunit gamma	NM_201244|Copg|54161|coatomer protein complex, subunit gamma	AK049417|Copg|54161|coatomer protein complex, subunit gamma	AK077461|Copg|54161|coatomer protein complex, subunit gamma	AK018151|Copg|54161|coatomer protein complex, subunit gamma	AK187461|Copg|54161|coatomer protein complex, subunit gamma	AK206833|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr16_-_16359122_16359124	0.0374204	CTCF.p2	NM_001025947|Dnm1l|74006|dynamin 1-like	NM_152816|Dnm1l|74006|dynamin 1-like
mm9_v1_chr1_-_172519932_172519981	0.0373869	CTCF.p2	AK045124|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK018149|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK053892|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	NM_001109985|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein
mm9_v1_chr5_+_35399461_35399583	0.0372478	CTCF.p2	AK170454|Dok7|231134|docking protein 7	BC089590|Dok7|231134|docking protein 7	AB220919|Dok7|231134|docking protein 7
mm9_v1_chr5_-_138224418_138224529	0.0371429	CTCF.p2	
mm9_v1_chr17_+_29405841_29405930	0.0371268	CTCF.p2	BC004004|BC004004|80748|cDNA sequence BC004004	AK157037|BC004004|80748|cDNA sequence BC004004	BC058575|BC004004|80748|cDNA sequence BC004004
mm9_v1_chr19_-_5295389_5295474	0.0365201	CTCF.p2	BC029745|Sf3b2|319322|splicing factor 3b, subunit 2	AK151354|Sf3b2|319322|splicing factor 3b, subunit 2	AK019282|Sf3b2|319322|splicing factor 3b, subunit 2	AK152965|Sf3b2|319322|splicing factor 3b, subunit 2	AK012009|Sf3b2|319322|splicing factor 3b, subunit 2	AK150961|Sf3b2|319322|splicing factor 3b, subunit 2	AK159893|Sf3b2|319322|splicing factor 3b, subunit 2	AK011613|Sf3b2|319322|splicing factor 3b, subunit 2	BC045207|Sf3b2|319322|splicing factor 3b, subunit 2	AK146540|Sf3b2|319322|splicing factor 3b, subunit 2	AK152327|Sf3b2|319322|splicing factor 3b, subunit 2	AK146864|Sf3b2|319322|splicing factor 3b, subunit 2	AK147687|Sf3b2|319322|splicing factor 3b, subunit 2	AK149776|Sf3b2|319322|splicing factor 3b, subunit 2	AK012643|Sf3b2|319322|splicing factor 3b, subunit 2	AK142136|Sf3b2|319322|splicing factor 3b, subunit 2	AK146063|Sf3b2|319322|splicing factor 3b, subunit 2	BC049118|Sf3b2|319322|splicing factor 3b, subunit 2	NM_030109|Sf3b2|319322|splicing factor 3b, subunit 2
mm9_v1_chr15_+_82176533_82176625	0.0360443	CTCF.p2	
mm9_v1_chr8_+_88224886_88224972	0.0351286	CTCF.p2	AK005119|1500002J14Rik|68945|RIKEN cDNA 1500002J14 gene
mm9_v1_chr5_+_37729746_37729775	0.0350632	CTCF.p2	BC037473|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)
mm9_v1_chr1_+_92100572_92100639	0.034819	CTCF.p2	AK031100|Cxcr7|12778|chemokine (C-X-C motif) receptor 7	NM_007722|Cxcr7|12778|chemokine (C-X-C motif) receptor 7	AF000236|Cxcr7|12778|chemokine (C-X-C motif) receptor 7	BC015254|Cxcr7|12778|chemokine (C-X-C motif) receptor 7
mm9_v1_chr11_+_102295463_102295502	0.0346149	CTCF.p2	AK193719|Grn|14824|granulin	AK219696|Grn|14824|granulin	AK211032|Grn|14824|granulin
mm9_v1_chr9_+_57408729_57408820	0.0332594	CTCF.p2	AK003080|Scamp2|24044|secretory carrier membrane protein 2	AK161002|Scamp2|24044|secretory carrier membrane protein 2	NM_022813|Scamp2|24044|secretory carrier membrane protein 2	AF295402|Scamp2|24044|secretory carrier membrane protein 2	AK171766|Scamp2|24044|secretory carrier membrane protein 2	BC003452|Scamp2|24044|secretory carrier membrane protein 2	BC014751|Scamp2|24044|secretory carrier membrane protein 2
mm9_v1_chr13_-_96661704_96661910	0.0330784	CTCF.p2	BC094939|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC052916|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK080384|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK147360|Iqgap2|544963|IQ motif containing GTPase activating protein 2	BC150958|Iqgap2|544963|IQ motif containing GTPase activating protein 2	AK142813|Iqgap2|544963|IQ motif containing GTPase activating protein 2	NM_027711|Iqgap2|544963|IQ motif containing GTPase activating protein 2
mm9_v1_chr8_+_72663589_72663631	0.0329088	CTCF.p2	AK161437|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	BC048525|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	NM_001145552|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	BC065393|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene	AK009829|2310045N01Rik|72368|RIKEN cDNA 2310045N01 gene
mm9_v1_chr15_-_91403581_91403640	0.0328153	CTCF.p2	BC119586|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	BC119587|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	AK041673|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13
mm9_v1_chr17_+_28938070_28938070	0.0326888	CTCF.p2	AK147555|Brpf3|268936|bromodomain and PHD finger containing, 3	NM_001081315|Brpf3|268936|bromodomain and PHD finger containing, 3
mm9_v1_chr14_+_58042878_58042962	0.0326579	CTCF.p2	AK160633|Ift88|21821|intraflagellar transport 88 homolog (Chlamydomonas)	NM_009376|Ift88|21821|intraflagellar transport 88 homolog (Chlamydomonas)	AK135110|Ift88|21821|intraflagellar transport 88 homolog (Chlamydomonas)	BC012250|Ift88|21821|intraflagellar transport 88 homolog (Chlamydomonas)	AK168395|Ift88|21821|intraflagellar transport 88 homolog (Chlamydomonas)	L31959|Ift88|21821|intraflagellar transport 88 homolog (Chlamydomonas)
mm9_v1_chr6_+_86315639_86315728	0.0322981	CTCF.p2	BC103775|Fam136a|66488|family with sequence similarity 136, member A	BC024049|Fam136a|66488|family with sequence similarity 136, member A	NM_025591|Fam136a|66488|family with sequence similarity 136, member A	AK008550|Fam136a|66488|family with sequence similarity 136, member A	AK005280|Fam136a|66488|family with sequence similarity 136, member A	AK141279|Fam136a|66488|family with sequence similarity 136, member A	CT010180|Fam136a|66488|family with sequence similarity 136, member A	BC013621|Fam136a|66488|family with sequence similarity 136, member A
mm9_v1_chr14_-_47398619_47398682	0.0320272	CTCF.p2	
mm9_v1_chr2_-_154198449_154198468	0.0313571	CTCF.p2	AK010081|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK010097|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	NM_025876|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK088517|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1	AK136570|Cdk5rap1|66971|CDK5 regulatory subunit associated protein 1
mm9_v1_chr14_-_25306175_25306259	0.0310778	CTCF.p2	BC151168|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151002|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC151169|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	AK143315|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A	BC053071|Polr3a|218832|polymerase (RNA) III (DNA directed) polypeptide A
mm9_v1_chr4_-_106926041_106926144	0.0309789	CTCF.p2	BC031894|Lrrc42|77809|leucine rich repeat containing 42	BC027203|Lrrc42|77809|leucine rich repeat containing 42	NM_029985|Lrrc42|77809|leucine rich repeat containing 42
mm9_v1_chr6_-_3295980_3296101	0.0305698	CTCF.p2	AK035387|9530028C05|330256|hypothetical protein 9530028C05
mm9_v1_chr11_+_20443168_20443285	0.0301493	CTCF.p2	AK147674|Sertad2|58172|SERTA domain containing 2	AK142268|Sertad2|58172|SERTA domain containing 2	NM_021372|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr17_+_34047186_34047373	0.0298201	CTCF.p2	AF006040|Daxx|13163|Fas death domain-associated protein
mm9_v1_chr4_+_151307819_151307875	0.0297731	CTCF.p2	NM_172704|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK089983|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK053156|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK156793|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK171781|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	AK172542|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	BC075619|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	BC085257|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11	BC079852|Dnajc11|230935|DnaJ (Hsp40) homolog, subfamily C, member 11
mm9_v1_chr8_-_72149357_72149431	0.0292872	CTCF.p2	AK083009|Zfp868|234362|zinc finger protein 868
mm9_v1_chr19_-_5366600_5366664	0.0292367	CTCF.p2	AB025349|Banf1|23825|barrier to autointegration factor 1	AK088896|Banf1|23825|barrier to autointegration factor 1	AK004212|Banf1|23825|barrier to autointegration factor 1	AK012588|Banf1|23825|barrier to autointegration factor 1	BC003709|Banf1|23825|barrier to autointegration factor 1	NM_011793|Banf1|23825|barrier to autointegration factor 1	AK003025|Banf1|23825|barrier to autointegration factor 1	AK011079|Banf1|23825|barrier to autointegration factor 1	AK011100|Banf1|23825|barrier to autointegration factor 1	AK168039|Banf1|23825|barrier to autointegration factor 1
mm9_v1_chr19_-_40686701_40686712	0.0290287	CTCF.p2	BC027335|Tctn3|67590|tectonic family member 3	NM_026260|Tctn3|67590|tectonic family member 3
mm9_v1_chr11_-_120442448_120442571	0.0287744	CTCF.p2	AK077343|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr4_-_147662005_147662073	0.0283745	CTCF.p2	BC070441|Ptchd2|242748|patched domain containing 2	BC072569|Ptchd2|242748|patched domain containing 2	AK090326|Ptchd2|242748|patched domain containing 2	NM_001083342|Ptchd2|242748|patched domain containing 2
mm9_v1_chr4_+_106926486_106926541	0.0281494	CTCF.p2	BC021897|Hspb11|72938|heat shock protein family B (small), member 11	BC034465|Hspb11|72938|heat shock protein family B (small), member 11	AK013636|Hspb11|72938|heat shock protein family B (small), member 11	AK157651|Hspb11|72938|heat shock protein family B (small), member 11	NM_028394|Hspb11|72938|heat shock protein family B (small), member 11
mm9_v1_chr6_+_29803751_29803890	0.0280609	CTCF.p2	AK172595|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr5_+_37729712_37729738	0.0276522	CTCF.p2	NM_145920|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)	AK134298|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)	BC064473|Evc2|68525|Ellis van Creveld syndrome 2 homolog (human)
mm9_v1_chr8_-_108089811_108089973	0.0275901	CTCF.p2	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr9_+_108838660_108838726	0.0273337	CTCF.p2	NM_025407|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK004031|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK160337|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK002292|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK151764|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK010553|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK013128|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK168218|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK167911|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	BC030064|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr2_-_167015603_167015641	0.027221	CTCF.p2	DQ646376|Kcnb1|16500|potassium voltage gated channel, Shab-related subfamily, member 1
mm9_v1_chr10_+_128345974_128346083	0.0270599	CTCF.p2	NM_001042580|Cd63|12512|CD63 antigen	BC083161|Cd63|12512|CD63 antigen
mm9_v1_chr19_-_7473566_7473625	0.0263333	CTCF.p2	
mm9_v1_chr2_+_144425632_144425666	0.0261235	CTCF.p2	AK158898|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr10_+_79422870_79422988	0.0258596	CTCF.p2	AK087505|Wdr18|216156|WD repeat domain 18	AK133716|Wdr18|216156|WD repeat domain 18	BC095984|Wdr18|216156|WD repeat domain 18	NM_175450|Wdr18|216156|WD repeat domain 18	AK032251|Wdr18|216156|WD repeat domain 18	AK050106|Wdr18|216156|WD repeat domain 18	AK160713|Wdr18|216156|WD repeat domain 18	AK163465|Wdr18|216156|WD repeat domain 18	AK166113|Wdr18|216156|WD repeat domain 18	AK168691|Wdr18|216156|WD repeat domain 18	AK082695|Wdr18|216156|WD repeat domain 18
mm9_v1_chr9_+_45714587_45714651	0.0255548	CTCF.p2	AK050638|Rnf214|235315|ring finger protein 214	BC056456|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	NM_008794|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr4_-_25208902_25208983	0.0255334	CTCF.p2	AK032663|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC058809|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK129211|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK007993|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK076206|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC132195|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC138153|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	AK132697|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC080203|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	BC099529|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene	NM_026194|1810074P20Rik|67490|RIKEN cDNA 1810074P20 gene
mm9_v1_chr7_+_135380798_135380870	0.025378	CTCF.p2	AK131111|Armc5|233912|armadillo repeat containing 5	NM_146205|Armc5|233912|armadillo repeat containing 5
mm9_v1_chr14_-_56377231_56377254	0.0252701	CTCF.p2	AF041377|Cideb|12684|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	BC046340|Cideb|12684|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
mm9_v1_chr6_+_83028608_83028623	0.0252652	CTCF.p2	AK008048|Pcgf1|69837|polycomb group ring finger 1
mm9_v1_chr2_-_121890678_121890752	0.0249208	CTCF.p2	BC019404|Spg11|214585|spastic paraplegia 11
mm9_v1_chr11_-_23397858_23397918	0.024677	CTCF.p2	BC064012|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)	BC055873|Ahsa2|268390|AHA1, activator of heat shock protein ATPase homolog 2 (yeast)
mm9_v1_chr17_-_65890082_65890121	0.0246474	CTCF.p2	BC150885|Tmem232|381107|transmembrane protein 232	BC172032|Tmem232|381107|transmembrane protein 232	AF338469|Tmem232|381107|transmembrane protein 232	NM_001008973|Tmem232|381107|transmembrane protein 232
mm9_v1_chr2_+_31150247_31150361	0.0245492	CTCF.p2	AK042865|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr3_-_63733328_63733393	0.0236919	CTCF.p2	BC125500|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene	BC132160|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene
mm9_v1_chr19_-_40686689_40686693	0.0235573	CTCF.p2	AK015861|Tctn3|67590|tectonic family member 3	AK016982|Tctn3|67590|tectonic family member 3	AK030156|Tctn3|67590|tectonic family member 3
mm9_v1_chr2_+_172266042_172266209	0.0234731	CTCF.p2	AK053258|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK010321|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK077823|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	NM_025542|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK009901|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC049072|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK167287|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK028792|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC004803|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK219307|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK209674|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK169588|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK170141|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK153121|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC096692|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116442|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116443|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC127166|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene
mm9_v1_chr7_-_125832234_125832286	0.0234621	CTCF.p2	
mm9_v1_chr1_+_72354084_72354123	0.0232502	CTCF.p2	X66323|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AF166486|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK010416|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK167312|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK168913|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK169838|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	BC029218|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5
mm9_v1_chr8_+_18595130_18595172	0.0228712	CTCF.p2	AK083572|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK138858|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK042026|Mcph1|244329|microcephaly, primary autosomal recessive 1	BC056924|Mcph1|244329|microcephaly, primary autosomal recessive 1	NM_173189|Mcph1|244329|microcephaly, primary autosomal recessive 1
mm9_v1_chr1_-_183441581_183441581	0.0227369	CTCF.p2	NM_207280|Ccdc121|403180|coiled-coil domain containing 121
mm9_v1_chr3_+_89049813_89049887	0.0226693	CTCF.p2	BC043030|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr2_+_131036131_131036175	0.0225603	CTCF.p2	AK009634|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	AK002807|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	BC048399|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	NM_027129|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene
mm9_v1_chr15_-_76368725_76368784	0.0224389	CTCF.p2	AK208517|Fbxl6|30840|F-box and leucine-rich repeat protein 6
mm9_v1_chr9_+_120213011_120213097	0.022279	CTCF.p2	AK148358|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr4_+_45354940_45354977	0.0220297	CTCF.p2	AK170534|Dcaf10|242418|DDB1 and CUL4 associated factor 10	AK165246|Dcaf10|242418|DDB1 and CUL4 associated factor 10	NM_153167|Dcaf10|242418|DDB1 and CUL4 associated factor 10
mm9_v1_chr10_+_126503214_126503242	0.0216544	CTCF.p2	AK012202|Cdk4|12567|cyclin-dependent kinase 4
mm9_v1_chr15_+_100959358_100959377	0.0214186	CTCF.p2	Z31664|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr8_+_34807688_34807718	0.021394	CTCF.p2	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr3_-_105490320_105490491	0.0210852	CTCF.p2	AK050950|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AF217000|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AF217001|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AJ250027|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AK154518|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	BC125471|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	BC137721|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	NM_017397|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	AF220454|Ddx20|53975|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
mm9_v1_chr7_-_109166668_109166710	0.0210275	CTCF.p2	AF122907|Il18bp|16068|interleukin 18 binding protein	NM_010531|Il18bp|16068|interleukin 18 binding protein	AK003370|Il18bp|16068|interleukin 18 binding protein
mm9_v1_chr6_-_7933383_7933439	0.0207814	CTCF.p2	
mm9_v1_chr4_-_140609574_140609606	0.0201177	CTCF.p2	AF527975|Crocc|230872|ciliary rootlet coiled-coil, rootletin	NM_172122|Crocc|230872|ciliary rootlet coiled-coil, rootletin
mm9_v1_chr4_-_110024513_110024515	0.0197894	CTCF.p2	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr14_+_48092305_48092319	0.019705	CTCF.p2	AK171630|Fbxo34|78938|F-box protein 34
mm9_v1_chr3_+_33699111_33699116	0.0196441	CTCF.p2	AK031605|Ttc14|67120|tetratricopeptide repeat domain 14	AK134539|Ttc14|67120|tetratricopeptide repeat domain 14	NM_025978|Ttc14|67120|tetratricopeptide repeat domain 14	NM_027619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr7_-_112959591_112959616	0.0194306	CTCF.p2	NM_025301|Mrpl17|27397|mitochondrial ribosomal protein L17
mm9_v1_chr19_-_34736879_34736908	0.019238	CTCF.p2	AK090072|Gm14446|667373|predicted gene 14446
mm9_v1_chr12_+_113384460_113384575	0.0190707	CTCF.p2	GQ489027|Kif26a|668303|kinesin family member 26A
mm9_v1_chr2_-_155479292_155479385	0.0189276	CTCF.p2	BC003931|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr8_-_24348082_24348154	0.0187558	CTCF.p2	BC002156|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	AK076104|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)	NM_024240|Gins4|109145|GINS complex subunit 4 (Sld5 homolog)
mm9_v1_chr5_-_5380077_5380250	0.0184615	CTCF.p2	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr2_+_32218529_32218697	0.018218	CTCF.p2	AK165687|Ciz1|68379|CDKN1A interacting zinc finger protein 1	AK137961|Ciz1|68379|CDKN1A interacting zinc finger protein 1
mm9_v1_chr8_+_108674263_108674491	0.0180547	CTCF.p2	AK028614|Pla2g15|192654|phospholipase A2, group XV	BC019373|Pla2g15|192654|phospholipase A2, group XV	NM_133792|Pla2g15|192654|phospholipase A2, group XV	AK155004|Pla2g15|192654|phospholipase A2, group XV	AK085194|Pla2g15|192654|phospholipase A2, group XV	AK163111|Pla2g15|192654|phospholipase A2, group XV	AK170814|Pla2g15|192654|phospholipase A2, group XV	AF468958|Pla2g15|192654|phospholipase A2, group XV	AK180645|Pla2g15|192654|phospholipase A2, group XV	AK188333|Pla2g15|192654|phospholipase A2, group XV	AK205252|Pla2g15|192654|phospholipase A2, group XV	AK205480|Pla2g15|192654|phospholipase A2, group XV	AK207442|Pla2g15|192654|phospholipase A2, group XV	AK211077|Pla2g15|192654|phospholipase A2, group XV	AK212406|Pla2g15|192654|phospholipase A2, group XV	AK212507|Pla2g15|192654|phospholipase A2, group XV	AK212587|Pla2g15|192654|phospholipase A2, group XV	AK212623|Pla2g15|192654|phospholipase A2, group XV	AK215050|Pla2g15|192654|phospholipase A2, group XV	AK215274|Pla2g15|192654|phospholipase A2, group XV	AK217196|Pla2g15|192654|phospholipase A2, group XV	AK219754|Pla2g15|192654|phospholipase A2, group XV
mm9_v1_chr10_+_80085486_80085637	0.0177776	CTCF.p2	AK152413|Csnk1g2|103236|casein kinase 1, gamma 2	NM_134002|Csnk1g2|103236|casein kinase 1, gamma 2	BC004839|Csnk1g2|103236|casein kinase 1, gamma 2	BC035440|Csnk1g2|103236|casein kinase 1, gamma 2
mm9_v1_chr9_+_77961044_77961183	0.0173798	CTCF.p2	NM_019987|Ick|56542|intestinal cell kinase	AK045950|Ick|56542|intestinal cell kinase	AK164613|Ick|56542|intestinal cell kinase	AK008991|Ick|56542|intestinal cell kinase	AK133537|Ick|56542|intestinal cell kinase	AK087484|Ick|56542|intestinal cell kinase
mm9_v1_chr14_-_71018208_71018377	0.0173185	CTCF.p2	AF079846|Epb4.9|13829|erythrocyte protein band 4.9	AF155547|Epb4.9|13829|erythrocyte protein band 4.9	BC037021|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr4_-_154460375_154460500	0.0171044	CTCF.p2	AK002550|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	NM_026395|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK168192|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK003682|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK013262|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK078396|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm9_v1_chr4_-_3761538_3761694	0.0169945	CTCF.p2	AK150667|Rps20|67427|ribosomal protein S20
mm9_v1_chr11_-_100355280_100355392	0.0164646	CTCF.p2	AK136812|Acly|104112|ATP citrate lyase	AK043434|Acly|104112|ATP citrate lyase
mm9_v1_chr5_-_35002717_35002796	0.016462	CTCF.p2	BC024998|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK161728|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	BC043043|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK148605|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK011648|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK078605|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	AK079609|Nop14|75416|NOP14 nucleolar protein homolog (yeast)	NM_029278|Nop14|75416|NOP14 nucleolar protein homolog (yeast)
mm9_v1_chr9_-_42752453_42752579	0.0153163	CTCF.p2	AK032029|Grik4|110637|glutamate receptor, ionotropic, kainate 4	NM_175481|Grik4|110637|glutamate receptor, ionotropic, kainate 4	AK080582|Grik4|110637|glutamate receptor, ionotropic, kainate 4
mm9_v1_chr2_-_151799566_151799709	0.0152599	CTCF.p2	AJ277454|Fam110a|73847|family with sequence similarity 110, member A	BC018162|Fam110a|73847|family with sequence similarity 110, member A	NM_028666|Fam110a|73847|family with sequence similarity 110, member A
mm9_v1_chr3_+_142223490_142223591	0.0151081	CTCF.p2	U44731|Gbp3|55932|guanylate binding protein 3
mm9_v1_chr7_-_20334650_20334796	0.0149428	CTCF.p2	D26107|Pvrl2|19294|poliovirus receptor-related 2	M80206|Pvrl2|19294|poliovirus receptor-related 2
mm9_v1_chr6_-_85854877_85854931	0.0148264	CTCF.p2	BC029200|1700019G17Rik|75541|RIKEN cDNA 1700019G17 gene	NM_029331|1700019G17Rik|75541|RIKEN cDNA 1700019G17 gene
mm9_v1_chr10_-_88996314_88996370	0.0146155	CTCF.p2	U09417|Nr1h4|20186|nuclear receptor subfamily 1, group H, member 4	NM_001163504|Nr1h4|20186|nuclear receptor subfamily 1, group H, member 4
mm9_v1_chr5_+_134659874_134659999	0.0145584	CTCF.p2	AK082488|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY116023|Gtf2ird2|114674|GTF2I repeat domain containing 2	AK081801|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC057179|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY014963|Gtf2ird2|114674|GTF2I repeat domain containing 2	NM_053266|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132157|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132159|Gtf2ird2|114674|GTF2I repeat domain containing 2
mm9_v1_chr4_-_123427465_123427587	0.0144544	CTCF.p2	AK006378|Akirin1|68050|akirin 1	AK078055|Akirin1|68050|akirin 1	AB041594|Akirin1|68050|akirin 1	AK160087|Akirin1|68050|akirin 1	AK168201|Akirin1|68050|akirin 1	AK168214|Akirin1|68050|akirin 1	AK146017|Akirin1|68050|akirin 1	AK168530|Akirin1|68050|akirin 1	AK159632|Akirin1|68050|akirin 1	NM_023423|Akirin1|68050|akirin 1	BC003291|Akirin1|68050|akirin 1
mm9_v1_chr19_-_36131650_36131849	0.0144307	CTCF.p2	AK138150|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178515|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	FM178516|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	BC116986|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	Z23107|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	AK139197|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7	NM_008315|Htr7|15566|5-hydroxytryptamine (serotonin) receptor 7
mm9_v1_chr17_-_66300454_66300558	0.0141126	CTCF.p2	AF292033|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AJ297390|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	BC004850|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK168547|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK033504|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK168633|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	AK049646|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)	NM_023053|Twsg1|65960|twisted gastrulation homolog 1 (Drosophila)
mm9_v1_chr11_-_97372344_97372370	0.0139935	CTCF.p2	AK051643|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr5_+_30960335_30960404	0.0136234	CTCF.p2	AK185707|4930471M23Rik|74919|RIKEN cDNA 4930471M23 gene
mm9_v1_chr11_-_60013141_60013246	0.0135173	CTCF.p2	AK040663|Srebf1|20787|sterol regulatory element binding transcription factor 1
mm9_v1_chr4_-_137871509_137871567	0.0133744	CTCF.p2	AK181855|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr2_+_26775279_26775409	0.0130286	CTCF.p2	AK215042|Surf2|20931|surfeit gene 2
mm9_v1_chr16_+_20717922_20717989	0.0127836	CTCF.p2	BC092087|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H
mm9_v1_chr10_+_45055555_45055577	0.0126672	CTCF.p2	NM_024285|Bves|23828|blood vessel epicardial substance	AF204174|Bves|23828|blood vessel epicardial substance
mm9_v1_chr4_-_41066842_41066902	0.0123951	CTCF.p2	AK203163|Nol6|230082|nucleolar protein family 6 (RNA-associated)
mm9_v1_chr9_+_117949578_117949817	0.0121283	CTCF.p2	NM_001048146|Azi2|27215|5-azacytidine induced gene 2	NM_013727|Azi2|27215|5-azacytidine induced gene 2	AK004992|Azi2|27215|5-azacytidine induced gene 2	AK165549|Azi2|27215|5-azacytidine induced gene 2	AK153477|Azi2|27215|5-azacytidine induced gene 2	AK167783|Azi2|27215|5-azacytidine induced gene 2	AK036102|Azi2|27215|5-azacytidine induced gene 2	AK134714|Azi2|27215|5-azacytidine induced gene 2	BC006851|Azi2|27215|5-azacytidine induced gene 2	AB007141|Azi2|27215|5-azacytidine induced gene 2	AK030076|Azi2|27215|5-azacytidine induced gene 2	AK015942|Azi2|27215|5-azacytidine induced gene 2
mm9_v1_chr5_+_130731488_130731494	0.0120545	CTCF.p2	AK045279|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	NM_178897|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
mm9_v1_chr1_-_181448145_181448150	0.0119729	CTCF.p2	AK167875|Smyd3|69726|SET and MYND domain containing 3	AK163057|Smyd3|69726|SET and MYND domain containing 3
mm9_v1_chr7_-_133512962_133513083	0.0116116	CTCF.p2	AK088763|Lat|16797|linker for activation of T cells	BC052340|Lat|16797|linker for activation of T cells	AK134003|Lat|16797|linker for activation of T cells	BC013337|Lat|16797|linker for activation of T cells	AF036907|Lat|16797|linker for activation of T cells	NM_010689|Lat|16797|linker for activation of T cells
mm9_v1_chr14_+_33413112_33413143	0.0114857	CTCF.p2	AK039633|Prrxl1|107751|paired related homeobox protein-like 1	NM_001001796|Prrxl1|107751|paired related homeobox protein-like 1	BC132613|Prrxl1|107751|paired related homeobox protein-like 1	BC145917|Prrxl1|107751|paired related homeobox protein-like 1	BC171926|Prrxl1|107751|paired related homeobox protein-like 1
mm9_v1_chr11_-_77707282_77707373	0.0113946	CTCF.p2	U94700|Pipox|19193|pipecolic acid oxidase	BC013525|Pipox|19193|pipecolic acid oxidase	AK135009|Pipox|19193|pipecolic acid oxidase	AK149488|Pipox|19193|pipecolic acid oxidase	AK008555|Pipox|19193|pipecolic acid oxidase	NM_008952|Pipox|19193|pipecolic acid oxidase
mm9_v1_chr13_+_33057312_33057381	0.0113664	CTCF.p2	AK078753|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	AK154048|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	AK171741|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	AK084785|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	BC061050|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	NM_011454|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b	U96707|Serpinb6b|20708|serine (or cysteine) peptidase inhibitor, clade B, member 6b
mm9_v1_chr15_+_34012415_34012599	0.0113331	CTCF.p2	AK087486|Mtdh|67154|metadherin	AK156119|Mtdh|67154|metadherin	AK029915|Mtdh|67154|metadherin	NM_026002|Mtdh|67154|metadherin	AK011808|Mtdh|67154|metadherin	AK151810|Mtdh|67154|metadherin	AK171976|Mtdh|67154|metadherin	AK151269|Mtdh|67154|metadherin	AF501309|Mtdh|67154|metadherin	AK009253|Mtdh|67154|metadherin	BC023115|Mtdh|67154|metadherin
mm9_v1_chr16_-_16358625_16358644	0.011212	CTCF.p2	AK154123|Dnm1l|74006|dynamin 1-like	BC040777|Dnm1l|74006|dynamin 1-like
mm9_v1_chr1_-_138130840_138130840	0.011156	CTCF.p2	BC052416|5730559C18Rik|67313|RIKEN cDNA 5730559C18 gene	BC053100|5730559C18Rik|67313|RIKEN cDNA 5730559C18 gene	NM_028872|5730559C18Rik|67313|RIKEN cDNA 5730559C18 gene
mm9_v1_chr17_-_87424652_87424745	0.0106091	CTCF.p2	AK218842|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK171083|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	BC028862|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	D50264|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	NM_008838|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK132796|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F
mm9_v1_chr5_+_144090975_144090986	0.010517	CTCF.p2	AK002861|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene	AK009603|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene	AK144491|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene
mm9_v1_chr4_-_151510433_151510433	0.0103363	CTCF.p2	AF540942|Espn|56226|espin	AF540943|Espn|56226|espin	AF540944|Espn|56226|espin	AF540945|Espn|56226|espin	NM_207688|Espn|56226|espin	NM_207689|Espn|56226|espin	NM_207690|Espn|56226|espin	NM_207691|Espn|56226|espin
mm9_v1_chr7_+_109118356_109118356	0.00995184	CTCF.p2	BC049791|Numa1|101706|nuclear mitotic apparatus protein 1	NM_133947|Numa1|101706|nuclear mitotic apparatus protein 1
mm9_v1_chr2_+_142888774_142888806	0.00980383	CTCF.p2	AK011274|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	BC026794|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK012944|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK013871|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	NM_021335|Snrpb2|20639|U2 small nuclear ribonucleoprotein B	AK005107|Snrpb2|20639|U2 small nuclear ribonucleoprotein B
mm9_v1_chr10_+_79611013_79611064	0.00940397	CTCF.p2	AK164324|Midn|59090|midnolin	AK164651|Midn|59090|midnolin	AB036882|Midn|59090|midnolin	NM_021565|Midn|59090|midnolin	BC034719|Midn|59090|midnolin
mm9_v1_chr2_-_149962381_149962433	0.00930105	CTCF.p2	AF242378|Zfp120|104348|zinc finger protein 120	BC141128|Zfp120|104348|zinc finger protein 120	AK033399|Zfp120|104348|zinc finger protein 120	AF211867|Zfp120|104348|zinc finger protein 120	AF211868|Zfp120|104348|zinc finger protein 120	AF211869|Zfp120|104348|zinc finger protein 120	NM_023266|Zfp120|104348|zinc finger protein 120	NM_181266|Zfp120|104348|zinc finger protein 120	AK132318|Zfp120|104348|zinc finger protein 120
mm9_v1_chr12_+_17999625_17999803	0.00909711	CTCF.p2	BC030401|Gm4983|245297|predicted gene 4983	BC083083|Gm4983|245297|predicted gene 4983
mm9_v1_chr3_+_90024723_90024820	0.00892342	CTCF.p2	AK002303|Rab13|68328|RAB13, member RAS oncogene family	NM_026677|Rab13|68328|RAB13, member RAS oncogene family	AB232608|Rab13|68328|RAB13, member RAS oncogene family
mm9_v1_chr19_+_5568016_5568024	0.0087949	CTCF.p2	AK171710|Gm962|381201|predicted gene 962
mm9_v1_chr9_-_107968072_107968105	0.00822865	CTCF.p2	AK219946|Rnf123|84585|ring finger protein 123	AK183260|Rnf123|84585|ring finger protein 123	AK191993|Rnf123|84585|ring finger protein 123	AK194363|Rnf123|84585|ring finger protein 123	AK204665|Rnf123|84585|ring finger protein 123	AK213432|Rnf123|84585|ring finger protein 123
mm9_v1_chr17_-_36169573_36169660	0.0082151	CTCF.p2	AF100699|H2-T23|15040|histocompatibility 2, T region locus 23	AF100700|H2-T23|15040|histocompatibility 2, T region locus 23	AF100702|H2-T23|15040|histocompatibility 2, T region locus 23	AF057279|H2-T23|15040|histocompatibility 2, T region locus 23	AF082510|H2-T23|15040|histocompatibility 2, T region locus 23	BC099472|H2-T23|15040|histocompatibility 2, T region locus 23	AB359230|H2-T23|15040|histocompatibility 2, T region locus 23	AK133502|H2-T23|15040|histocompatibility 2, T region locus 23	M11284|H2-T23|15040|histocompatibility 2, T region locus 23	NM_010398|H2-T23|15040|histocompatibility 2, T region locus 23
mm9_v1_chr9_-_15110567_15110606	0.00737742	CTCF.p2	AK016432|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	AK088123|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	AK147073|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr1_-_195099285_195099381	0.00724747	CTCF.p2	X95280|G0s2|14373|G0/G1 switch gene 2	AK003165|G0s2|14373|G0/G1 switch gene 2	NM_008059|G0s2|14373|G0/G1 switch gene 2
mm9_v1_chr15_+_98620287_98620435	0.0072178	CTCF.p2	BC005449|Wnt1|22408|wingless-related MMTV integration site 1	NM_021279|Wnt1|22408|wingless-related MMTV integration site 1	AK141669|Wnt1|22408|wingless-related MMTV integration site 1	M11943|Wnt1|22408|wingless-related MMTV integration site 1
mm9_v1_chr19_-_4012654_4012674	0.00710874	CTCF.p2	BC041682|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK151455|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm9_v1_chr7_+_54110791_54110836	0.00706463	CTCF.p2	
mm9_v1_chr9_+_108197453_108197584	0.0068124	CTCF.p2	
mm9_v1_chr2_-_26207615_26207656	0.00650977	CTCF.p2	AK004089|Dnlz|52838|DNL-type zinc finger	AK142070|Dnlz|52838|DNL-type zinc finger	NM_001139503|Dnlz|52838|DNL-type zinc finger	NM_001139504|Dnlz|52838|DNL-type zinc finger	NM_026828|Dnlz|52838|DNL-type zinc finger
mm9_v1_chr19_+_46379216_46379289	0.00649875	CTCF.p2	NM_001177369|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK144994|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK137680|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK148160|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AK150012|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100	AF155372|Nfkb2|18034|nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100
mm9_v1_chr11_-_94565812_94565812	0.00640789	CTCF.p2	AK082500|Gm11541|432589|predicted gene 11541	BC147833|Gm11541|432589|predicted gene 11541	BC147838|Gm11541|432589|predicted gene 11541	NM_001007584|Gm11541|432589|predicted gene 11541
mm9_v1_chr10_+_62487259_62487259	0.00629519	CTCF.p2	AK014198|Pbld2|67307|phenazine biosynthesis-like protein domain containing 2	NM_026085|Pbld2|67307|phenazine biosynthesis-like protein domain containing 2
mm9_v1_chr2_-_113669229_113669239	0.00626302	CTCF.p2	BC029021|Scg5|20394|secretogranin V
mm9_v1_chr9_-_53475591_53475593	0.00606965	CTCF.p2	AK018437|Cul5|75717|cullin 5
mm9_v1_chr17_-_23981121_23981138	0.00595488	CTCF.p2	AK016509|Prss41|71003|protease, serine, 41	AB049453|Prss41|71003|protease, serine, 41	NM_027644|Prss41|71003|protease, serine, 41	AK049297|Prss41|71003|protease, serine, 41	BC145586|Prss41|71003|protease, serine, 41	BC150797|Prss41|71003|protease, serine, 41
mm9_v1_chr17_+_3114963_3115105	0.00588909	CTCF.p2	AK157957|Scaf8|106583|SR-related CTD-associated factor 8	AK042381|Scaf8|106583|SR-related CTD-associated factor 8	NM_134123|Scaf8|106583|SR-related CTD-associated factor 8	BC075621|Scaf8|106583|SR-related CTD-associated factor 8	AK122451|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr11_+_96164825_96164850	0.00583678	CTCF.p2	M26283|Hoxb5|15413|homeobox B5	NM_008268|Hoxb5|15413|homeobox B5
mm9_v1_chr19_-_5510453_5510506	0.00561551	CTCF.p2	AK047234|Snx32|225861|sorting nexin 32	BC048922|Snx32|225861|sorting nexin 32	NM_001024560|Snx32|225861|sorting nexin 32	AK037118|Snx32|225861|sorting nexin 32	AK143441|Snx32|225861|sorting nexin 32
mm9_v1_chr7_-_139749889_139749896	0.00545741	CTCF.p2	
mm9_v1_chr17_+_35226172_35226253	0.005297	CTCF.p2	BC029114|Abhd16a|193742|abhydrolase domain containing 16A	NM_178592|Abhd16a|193742|abhydrolase domain containing 16A
mm9_v1_chr7_+_17477134_17477134	0.00516805	CTCF.p2	AK144609|Gng8|14709|guanine nucleotide binding protein (G protein), gamma 8	NM_010320|Gng8|14709|guanine nucleotide binding protein (G protein), gamma 8
mm9_v1_chr6_+_85418280_85418317	0.00503427	CTCF.p2	
mm9_v1_chr8_+_97056910_97056982	0.00502704	CTCF.p2	BC031801|Cpne2|234577|copine II	NM_153507|Cpne2|234577|copine II	AK160238|Cpne2|234577|copine II	AK086165|Cpne2|234577|copine II	BC022128|Cpne2|234577|copine II
mm9_v1_chr15_-_89204248_89204287	0.00482988	CTCF.p2	BC019554|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	NM_001111288|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	AK013765|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)
mm9_v1_chr18_+_37164856_37165092	0.00478138	CTCF.p2	BC079625|Pcdha10|12943|protocadherin alpha 10	AY013757|Pcdha10|12943|protocadherin alpha 10	NM_009961|Pcdha10|12943|protocadherin alpha 10	AB008178|Pcdha10|12943|protocadherin alpha 10
mm9_v1_chr4_-_116806403_116806636	0.00447455	CTCF.p2	U21392|Plk3|12795|polo-like kinase 3 (Drosophila)	BC031180|Plk3|12795|polo-like kinase 3 (Drosophila)	BC063051|Plk3|12795|polo-like kinase 3 (Drosophila)	NM_013807|Plk3|12795|polo-like kinase 3 (Drosophila)	AK156754|Plk3|12795|polo-like kinase 3 (Drosophila)
mm9_v1_chr9_-_64101429_64101455	0.00412948	CTCF.p2	AK154793|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr8_-_26059258_26059275	0.00412388	CTCF.p2	AF513715|Adam32|353188|a disintegrin and metallopeptidase domain 32	AK005759|Adam32|353188|a disintegrin and metallopeptidase domain 32	BC060983|Adam32|353188|a disintegrin and metallopeptidase domain 32	AK131749|Adam32|353188|a disintegrin and metallopeptidase domain 32	NM_153397|Adam32|353188|a disintegrin and metallopeptidase domain 32
mm9_v1_chr19_+_43827561_43827596	0.00399215	CTCF.p2	AK007591|Cutc|66388|cutC copper transporter homolog (E.coli)
mm9_v1_chr19_-_5843325_5843365	0.0039362	CTCF.p2	AK206554|Neat1|66961|nuclear paraspeckle assembly transcript 1 (non-protein coding)
mm9_v1_chr4_-_128287236_128287341	0.00375218	CTCF.p2	BC076602|Zscan20|269585|zinc finger and SCAN domains 20	AK047820|Zscan20|269585|zinc finger and SCAN domains 20	AK153688|Zscan20|269585|zinc finger and SCAN domains 20	AK153845|Zscan20|269585|zinc finger and SCAN domains 20	AK144249|Zscan20|269585|zinc finger and SCAN domains 20	NM_177758|Zscan20|269585|zinc finger and SCAN domains 20
mm9_v1_chr2_-_26763244_26763318	0.00353651	CTCF.p2	AK203437|Med22|20933|mediator complex subunit 22	AK217391|Med22|20933|mediator complex subunit 22
mm9_v1_chr17_-_36035368_36035398	0.003514	CTCF.p2	AK177921|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chr11_+_102296401_102296428	0.00346258	CTCF.p2	AK204596|Grn|14824|granulin	AK204598|Grn|14824|granulin
mm9_v1_chr2_+_163428073_163428114	0.00321672	CTCF.p2	AK043791|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK052794|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK018052|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK156641|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK081680|Ttpal|76080|tocopherol (alpha) transfer protein-like	BC052389|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK033600|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr2_+_163899842_163899948	0.00295259	CTCF.p2	BC054521|Stk4|58231|serine/threonine kinase 4	AF271360|Stk4|58231|serine/threonine kinase 4	AK028838|Stk4|58231|serine/threonine kinase 4	NM_021420|Stk4|58231|serine/threonine kinase 4
mm9_v1_chr13_+_95746298_95746380	0.00288604	CTCF.p2	AK082348|Wdr41|218460|WD repeat domain 41	NM_172590|Wdr41|218460|WD repeat domain 41	AK046853|Wdr41|218460|WD repeat domain 41	AK149993|Wdr41|218460|WD repeat domain 41
mm9_v1_chr5_+_110539110_110539110	0.00276737	CTCF.p2	AK043719|Zfp605|675812|zinc finger protein 605	NM_001163996|Zfp605|675812|zinc finger protein 605
mm9_v1_chr5_+_35003027_35003160	0.00266857	CTCF.p2	AK020792|Grk4|14772|G protein-coupled receptor kinase 4	AK132685|Grk4|14772|G protein-coupled receptor kinase 4	NM_001080743|Grk4|14772|G protein-coupled receptor kinase 4	NM_019497|Grk4|14772|G protein-coupled receptor kinase 4	AK078475|Grk4|14772|G protein-coupled receptor kinase 4
mm9_v1_chr2_-_168478155_168478229	0.00219532	CTCF.p2	AK203030|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr18_-_21054847_21054899	0.00217741	CTCF.p2	AK044854|Trappc8|75964|trafficking protein particle complex 8
mm9_v1_chr7_-_74904546_74904632	0.00200691	CTCF.p2	BC115442|Synm|233335|synemin, intermediate filament protein	BC115443|Synm|233335|synemin, intermediate filament protein	BC026872|Synm|233335|synemin, intermediate filament protein	BC040093|Synm|233335|synemin, intermediate filament protein	AJ579700|Synm|233335|synemin, intermediate filament protein	AJ579701|Synm|233335|synemin, intermediate filament protein	AJ579702|Synm|233335|synemin, intermediate filament protein	AK143019|Synm|233335|synemin, intermediate filament protein	NM_183312|Synm|233335|synemin, intermediate filament protein	NM_201639|Synm|233335|synemin, intermediate filament protein	NM_207663|Synm|233335|synemin, intermediate filament protein
mm9_v1_chr4_+_12016499_12016564	0.00198718	CTCF.p2	NM_198957|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	AK169895|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	BC080741|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene
mm9_v1_chr16_+_13265171_13265171	0.00195565	CTCF.p2	BC028459|Mkl2|239719|MKL/myocardin-like 2	NM_181860|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr9_-_44076207_44076269	0.00191059	CTCF.p2	AK170088|Nlrx1|270151|NLR family member X1	AK089260|Nlrx1|270151|NLR family member X1	AK145780|Nlrx1|270151|NLR family member X1	NM_001163743|Nlrx1|270151|NLR family member X1
mm9_v1_chr3_-_144382959_144383365	0.00177368	CTCF.p2	AK029647|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK158415|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK011371|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK004590|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	BC024362|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK172959|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK146246|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF263364|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF272946|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	DQ205686|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	NM_019464|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr4_+_150239183_150239284	0.00175389	CTCF.p2	AK205245|Errfi1|74155|ERBB receptor feedback inhibitor 1
mm9_v1_chr2_+_121239744_121239768	0.0014427	CTCF.p2	BC033439|Pdia3|14827|protein disulfide isomerase associated 3
mm9_v1_chr4_+_45354988_45355012	0.00130646	CTCF.p2	BC027317|Dcaf10|242418|DDB1 and CUL4 associated factor 10
mm9_v1_chr9_-_121766648_121766667	0.00128165	CTCF.p2	AF141312|Higd1a|56295|HIG1 domain family, member 1A	NM_001112668|Gm9790|100042265|predicted gene 9790	AY028387|Higd1a|56295|HIG1 domain family, member 1A	BC021594|Higd1a|56295|HIG1 domain family, member 1A
mm9_v1_chr10_+_121176978_121177017	0.00124812	CTCF.p2	BC065058|BC048403|270802|cDNA sequence BC048403	NM_173022|BC048403|270802|cDNA sequence BC048403	AK166238|BC048403|270802|cDNA sequence BC048403	AK138662|BC048403|270802|cDNA sequence BC048403	AK162911|BC048403|270802|cDNA sequence BC048403	AK087110|BC048403|270802|cDNA sequence BC048403	AK169891|BC048403|270802|cDNA sequence BC048403
mm9_v1_chr17_-_46464924_46464971	0.00121086	CTCF.p2	BC060644|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	BC150818|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK133240|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK170600|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK164902|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK170539|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AK171535|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	AF417121|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10	NM_170680|Abcc10|224814|ATP-binding cassette, sub-family C (CFTR/MRP), member 10
mm9_v1_chr11_+_101526837_101526854	0.000869096	CTCF.p2	NM_025404|Arl4d|80981|ADP-ribosylation factor-like 4D
mm9_v1_chr17_+_34341417_34341460	0.000804362	CTCF.p2	NM_011530|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK159200|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr17_+_35068184_35068197	0.000654611	CTCF.p2	NM_010893|Neu1|18010|neuraminidase 1
mm9_v1_chr10_+_126602394_126602451	0.000523519	CTCF.p2	BC022180|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr9_-_106378901_106379002	0.000316118	CTCF.p2	BC062204|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK044223|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK088125|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AF368233|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	NM_145619|Parp3|235587|poly (ADP-ribose) polymerase family, member 3	AK145259|Parp3|235587|poly (ADP-ribose) polymerase family, member 3
mm9_v1_chr2_+_75542804_75542924	0.000297072	CTCF.p2	AK053216|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene	AK078602|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene
mm9_v1_chr8_-_106966899_106966946	1.00959e-05	CTCF.p2	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
