mm9_v1_chr8_+_98226914_98226962	0.894853	CUACAGU	NM_001195006|Ndrg4|234593|N-myc downstream regulated gene 4	NM_145602|Ndrg4|234593|N-myc downstream regulated gene 4	AK168873|Ndrg4|234593|N-myc downstream regulated gene 4	AK090374|Ndrg4|234593|N-myc downstream regulated gene 4	AK144294|Ndrg4|234593|N-myc downstream regulated gene 4	BC006595|Ndrg4|234593|N-myc downstream regulated gene 4
mm9_v1_chr9_-_117161564_117161606	0.61106	CUACAGU	BC108402|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK052196|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK032938|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK081921|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK051776|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK041098|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172122|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172123|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172124|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172126|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_178660|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr1_+_189821727_189821874	0.60364	CUACAGU	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr9_+_21001148_21001171	0.457614	CUACAGU	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr1_-_37592976_37593103	0.427682	CUACAGU	AB053217|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK163327|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	AK082702|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A	NM_173870|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chrX_+_10062237_10062294	0.417392	CUACAGU	NM_019634|Tspan7|21912|tetraspanin 7	AK195558|Tspan7|21912|tetraspanin 7	AK147306|Tspan7|21912|tetraspanin 7	AK147404|Tspan7|21912|tetraspanin 7	AK004776|Tspan7|21912|tetraspanin 7	BC058603|Tspan7|21912|tetraspanin 7	AF052492|Tspan7|21912|tetraspanin 7	BC050153|Tspan7|21912|tetraspanin 7	D26483|Tspan7|21912|tetraspanin 7
mm9_v1_chr4_+_97248556_97248685	0.401538	CUACAGU	D90173|Nfia|18027|nuclear factor I/A	AK048696|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene	AK139357|Nfia|18027|nuclear factor I/A	NM_001122952|Nfia|18027|nuclear factor I/A	AK051361|D130039L10Rik|320488|RIKEN cDNA D130039L10 gene
mm9_v1_chr11_+_98603186_98603266	0.400629	CUACAGU	AK078233|Thra|21833|thyroid hormone receptor alpha	NM_178060|Thra|21833|thyroid hormone receptor alpha	BC046795|Thra|21833|thyroid hormone receptor alpha
mm9_v1_chr10_+_7309565_7309776	0.396011	CUACAGU	AK048919|Lrp11|237253|low density lipoprotein receptor-related protein 11	NM_172784|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK036676|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK050544|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK031994|Lrp11|237253|low density lipoprotein receptor-related protein 11	BC059874|Lrp11|237253|low density lipoprotein receptor-related protein 11
mm9_v1_chr1_-_174228105_174228194	0.375869	CUACAGU	BC036127|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK129212|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK147331|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK148775|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK161840|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK168703|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK052863|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK137602|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	AK164509|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide	NM_178405|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide
mm9_v1_chr16_+_91270009_91270054	0.334364	CUACAGU	NM_016968|Olig1|50914|oligodendrocyte transcription factor 1	AK144435|Olig1|50914|oligodendrocyte transcription factor 1	AB038696|Olig1|50914|oligodendrocyte transcription factor 1	BC046316|Olig1|50914|oligodendrocyte transcription factor 1
mm9_v1_chr1_-_72921438_72921462	0.329797	CUACAGU	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr2_+_4073908_4073934	0.329786	CUACAGU	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr3_+_75361454_75361503	0.320405	CUACAGU	NM_009250|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK032152|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AK133770|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	BC006776|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1	AJ001700|Serpini1|20713|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm9_v1_chr16_+_13986691_13986753	0.301585	CUACAGU	AK049997|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK076136|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK139470|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK136859|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	NM_144518|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK019307|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	BC022741|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK035868|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene
mm9_v1_chr9_-_55785907_55785932	0.295556	CUACAGU	AK031358|Scaper|244891|S phase cyclin A-associated protein in the ER	AK049497|Scaper|244891|S phase cyclin A-associated protein in the ER	NM_001081341|Scaper|244891|S phase cyclin A-associated protein in the ER	AK048755|Scaper|244891|S phase cyclin A-associated protein in the ER
mm9_v1_chr19_-_17912073_17912162	0.292444	CUACAGU	AK086210|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	AK087337|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	AK143998|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	NM_001163144|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	NM_001190483|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5
mm9_v1_chr5_-_136410488_136410547	0.290271	CUACAGU	NM_018871|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr4_-_82151180_82151288	0.288112	CUACAGU	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr14_+_34736772_34736788	0.275344	CUACAGU	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr10_+_126602182_126602286	0.26265	CUACAGU	AK144484|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC057199|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	NM_008080|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC019969|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chrX_-_103124651_103124717	0.25404	CUACAGU	AK135019|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AF026032|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	AK088095|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)	NM_009530|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr1_-_94998418_94998474	0.253218	CUACAGU	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr2_-_93797176_93797261	0.250884	CUACAGU	AK143447|Gm13889|620695|predicted gene 13889	NM_001145034|Gm13889|620695|predicted gene 13889
mm9_v1_chr13_+_19040215_19040285	0.241499	CUACAGU	AK132168|Amph|218038|amphiphysin	BC054718|Amph|218038|amphiphysin	NM_175007|Amph|218038|amphiphysin	AK047144|Amph|218038|amphiphysin
mm9_v1_chr14_+_19103655_19103798	0.241114	CUACAGU	NM_023526|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK028539|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK148040|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK010285|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	BC061092|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AK167340|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1	AF225707|Nkiras1|69721|NFKB inhibitor interacting Ras-like protein 1
mm9_v1_chr4_-_91042997_91043190	0.240602	CUACAGU	AK149201|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	AK141919|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_001177883|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr2_+_124436031_124436031	0.231912	CUACAGU	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr2_-_65405546_65405588	0.230843	CUACAGU	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr8_+_113245378_113245384	0.228397	CUACAGU	BC060632|Mtss1l|244654|metastasis suppressor 1-like	NM_198625|Mtss1l|244654|metastasis suppressor 1-like
mm9_v1_chr9_-_53823107_53823121	0.225044	CUACAGU	AK132239|Elmod1|270162|ELMO domain containing 1	NM_177769|Elmod1|270162|ELMO domain containing 1
mm9_v1_chr1_+_66221851_66221903	0.225019	CUACAGU	AK166380|Mtap2|17756|microtubule-associated protein 2	BC052446|Mtap2|17756|microtubule-associated protein 2	NM_001039934|Mtap2|17756|microtubule-associated protein 2	NM_008632|Mtap2|17756|microtubule-associated protein 2	BC150945|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr5_+_31014229_31014273	0.21737	CUACAGU	AK044866|Dpysl5|65254|dihydropyrimidinase-like 5	BC065054|Dpysl5|65254|dihydropyrimidinase-like 5	NM_023047|Dpysl5|65254|dihydropyrimidinase-like 5	BC103789|Dpysl5|65254|dihydropyrimidinase-like 5
mm9_v1_chr5_-_84846348_84846408	0.217165	CUACAGU	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr1_+_23768764_23768872	0.214583	CUACAGU	AK052640|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	NM_172124|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AB055902|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK048146|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK220433|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC056368|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC058082|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm9_v1_chr16_-_37385024_37385045	0.212955	CUACAGU	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr7_-_134968017_134968064	0.21279	CUACAGU	NM_024414|Stx1b|56216|syntaxin 1B
mm9_v1_chr9_-_31019392_31019409	0.206204	CUACAGU	AK013376|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z27070|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK149977|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK150020|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK087459|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK160471|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102455|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102456|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_009691|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z22592|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr2_-_131970786_131970867	0.20297	CUACAGU	AY004874|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	AK087175|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	AK169991|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2	NM_018824|Slc23a2|54338|solute carrier family 23 (nucleobase transporters), member 2
mm9_v1_chr4_-_134260127_134260247	0.201254	CUACAGU	AK144486|Man1c1|230815|mannosidase, alpha, class 1C, member 1	BC067023|Man1c1|230815|mannosidase, alpha, class 1C, member 1	NM_207237|Man1c1|230815|mannosidase, alpha, class 1C, member 1
mm9_v1_chrX_-_140367467_140367853	0.201185	CUACAGU	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr2_-_136213509_136213702	0.196995	CUACAGU	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chr3_-_88964078_88964108	0.191424	CUACAGU	AJ225124|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	NM_008227|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3	AK032225|Hcn3|15168|hyperpolarization-activated, cyclic nucleotide-gated K+ 3
mm9_v1_chr6_+_14851348_14851478	0.191383	CUACAGU	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr14_-_34791949_34791949	0.188811	CUACAGU	BC089025|Zfp488|382867|zinc finger protein 488	NM_001013777|Zfp488|382867|zinc finger protein 488
mm9_v1_chr9_-_64585562_64585585	0.187406	CUACAGU	AK014268|Rab11a|53869|RAB11a, member RAS oncogene family	AK147122|Rab11a|53869|RAB11a, member RAS oncogene family	NM_017382|Rab11a|53869|RAB11a, member RAS oncogene family
mm9_v1_chr7_+_106415956_106416023	0.184871	CUACAGU	BC053039|Mtap6|17760|microtubule-associated protein 6	NM_001048167|Mtap6|17760|microtubule-associated protein 6	NM_010837|Mtap6|17760|microtubule-associated protein 6	AK082709|Mtap6|17760|microtubule-associated protein 6	AK087413|Mtap6|17760|microtubule-associated protein 6
mm9_v1_chr15_+_32174546_32174624	0.180138	CUACAGU	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr10_-_126632763_126632797	0.176465	CUACAGU	AK205953|Dtx3|80904|deltex 3 homolog (Drosophila)	BC099687|Dtx3|80904|deltex 3 homolog (Drosophila)	NM_030714|Dtx3|80904|deltex 3 homolog (Drosophila)	BC048434|Dtx3|80904|deltex 3 homolog (Drosophila)	AK148444|Dtx3|80904|deltex 3 homolog (Drosophila)
mm9_v1_chr13_-_53076251_53076471	0.169235	CUACAGU	BC031377|Nfil3|18030|nuclear factor, interleukin 3, regulated	AK087541|Nfil3|18030|nuclear factor, interleukin 3, regulated	NM_017373|Nfil3|18030|nuclear factor, interleukin 3, regulated
mm9_v1_chr6_+_86799460_86799754	0.168434	CUACAGU	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr9_+_13632152_13632249	0.166848	CUACAGU	AK145026|Fam76b|72826|family with sequence similarity 76, member B	BC043120|Fam76b|72826|family with sequence similarity 76, member B	NM_176836|Fam76b|72826|family with sequence similarity 76, member B	AK052430|Fam76b|72826|family with sequence similarity 76, member B	BC050870|Fam76b|72826|family with sequence similarity 76, member B
mm9_v1_chr6_+_114081227_114081234	0.164296	CUACAGU	AK140423|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK053078|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	NM_172890|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr12_+_101437735_101437896	0.163012	CUACAGU	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr17_+_25945986_25946050	0.160517	CUACAGU	NM_001164225|Fbxl16|214931|F-box and leucine-rich repeat protein 16
mm9_v1_chr7_-_118226515_118226580	0.159178	CUACAGU	AK150745|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK151637|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK144309|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	U76112|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC057673|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC127064|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_001040131|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_013507|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr8_+_127316918_127316991	0.151817	CUACAGU	AK051455|Trim67|330863|tripartite motif-containing 67	NM_198632|Trim67|330863|tripartite motif-containing 67	BC094596|Trim67|330863|tripartite motif-containing 67
mm9_v1_chr11_+_74644411_74644428	0.150501	CUACAGU	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr2_+_181255209_181255262	0.150388	CUACAGU	NM_016775|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK083584|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK007879|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK029006|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK032373|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	BC018231|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chrX_-_61530170_61530177	0.147988	CUACAGU	AK053065|Slitrk4|245446|SLIT and NTRK-like family, member 4	NM_178740|Slitrk4|245446|SLIT and NTRK-like family, member 4
mm9_v1_chr10_-_94879435_94879509	0.147849	CUACAGU	AK160537|Socs2|216233|suppressor of cytokine signaling 2	AK162591|Socs2|216233|suppressor of cytokine signaling 2	BC106153|Socs2|216233|suppressor of cytokine signaling 2	NM_007706|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr7_-_146374392_146374419	0.143607	CUACAGU	NM_021302|Stk32c|57740|serine/threonine kinase 32C
mm9_v1_chr11_+_77908168_77908192	0.142161	CUACAGU	AK085728|BC017647|216971|cDNA sequence BC017647	NM_145430|BC017647|216971|cDNA sequence BC017647	AK047860|BC017647|216971|cDNA sequence BC017647	AK140562|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr3_+_7503409_7503519	0.141129	CUACAGU	NM_173181|Fam164a|67306|family with sequence similarity 164, member A	BC087731|Fam164a|67306|family with sequence similarity 164, member A	AK083941|Fam164a|67306|family with sequence similarity 164, member A	AK170609|Fam164a|67306|family with sequence similarity 164, member A	AK085187|Fam164a|67306|family with sequence similarity 164, member A	AK014202|Fam164a|67306|family with sequence similarity 164, member A	BC044809|Fam164a|67306|family with sequence similarity 164, member A
mm9_v1_chr4_-_134989653_134989790	0.139957	CUACAGU	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr7_+_142729505_142729604	0.13791	CUACAGU	AK004602|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	NM_011212|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U35368|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	BC024631|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK132455|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	U62387|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr7_+_99890204_99890223	0.131613	CUACAGU	AK142206|Rab30|75985|RAB30, member RAS oncogene family	BC017550|Rab30|75985|RAB30, member RAS oncogene family	NM_029494|Rab30|75985|RAB30, member RAS oncogene family
mm9_v1_chr1_-_107253245_107253286	0.130862	CUACAGU	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr8_-_42140113_42140147	0.125259	CUACAGU	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr6_-_72389491_72389552	0.124784	CUACAGU	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr4_-_91038729_91038745	0.124717	CUACAGU	U29088|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_010486|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	NM_207686|Elavl2|15569|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm9_v1_chr11_-_87800799_87801034	0.121262	CUACAGU	AK028319|Dynll2|68097|dynein light chain LC8-type 2	BC011289|Dynll2|68097|dynein light chain LC8-type 2	BC058797|Dynll2|68097|dynein light chain LC8-type 2	BC040822|Dynll2|68097|dynein light chain LC8-type 2	AK011284|Dynll2|68097|dynein light chain LC8-type 2	AK160114|Dynll2|68097|dynein light chain LC8-type 2	AK049645|Dynll2|68097|dynein light chain LC8-type 2	AK078434|Dynll2|68097|dynein light chain LC8-type 2	AK169212|Dynll2|68097|dynein light chain LC8-type 2	NM_026556|Dynll2|68097|dynein light chain LC8-type 2
mm9_v1_chr15_-_76983985_76984241	0.120313	CUACAGU	AF387322|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659951|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659952|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AY659953|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017388|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	DQ017389|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	BC002124|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AF229055|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	AK044929|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110828|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110829|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110830|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr4_+_40917975_40918059	0.116686	CUACAGU	NM_023739|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK144647|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK005038|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK050749|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK160013|Nfx1|74164|nuclear transcription factor, X-box binding 1	AF223576|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK146108|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK155387|Nfx1|74164|nuclear transcription factor, X-box binding 1	AK033850|Nfx1|74164|nuclear transcription factor, X-box binding 1	X80436|Nfx1|74164|nuclear transcription factor, X-box binding 1	BC053709|Nfx1|74164|nuclear transcription factor, X-box binding 1
mm9_v1_chr5_-_124482223_124482295	0.11555	CUACAGU	AK082658|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172114|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK172337|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK149893|Vps37b|330192|vacuolar protein sorting 37B (yeast)	AK166359|Vps37b|330192|vacuolar protein sorting 37B (yeast)	BC026744|Vps37b|330192|vacuolar protein sorting 37B (yeast)	NM_177876|Vps37b|330192|vacuolar protein sorting 37B (yeast)
mm9_v1_chr10_-_6980199_6980474	0.1151	CUACAGU	AK042973|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	NM_133485|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK047607|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK085997|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AF407167|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr6_-_116143380_116143517	0.114655	CUACAGU	AK173022|Tmcc1|330401|transmembrane and coiled coil domains 1	NM_177412|Tmcc1|330401|transmembrane and coiled coil domains 1
mm9_v1_chr11_-_74403603_74403659	0.112911	CUACAGU	NM_001015046|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr11_-_54674080_54674223	0.11269	CUACAGU	NM_029327|Lyrm7|75530|LYR motif containing 7	BC139403|Lyrm7|75530|LYR motif containing 7	BC139406|Lyrm7|75530|LYR motif containing 7
mm9_v1_chr13_+_9275741_9275783	0.112465	CUACAGU	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr15_-_38448923_38449033	0.111492	CUACAGU	BC046814|Azin1|54375|antizyme inhibitor 1	BC021152|Azin1|54375|antizyme inhibitor 1	BC019412|Azin1|54375|antizyme inhibitor 1	AK088112|Azin1|54375|antizyme inhibitor 1	AK088671|Azin1|54375|antizyme inhibitor 1	AK133914|Azin1|54375|antizyme inhibitor 1	AK049680|Azin1|54375|antizyme inhibitor 1	NM_001102458|Azin1|54375|antizyme inhibitor 1	NM_018745|Azin1|54375|antizyme inhibitor 1
mm9_v1_chr10_-_10802102_10802153	0.110084	CUACAGU	BC067057|Grm1|14816|glutamate receptor, metabotropic 1	NM_001114333|Grm1|14816|glutamate receptor, metabotropic 1	NM_016976|Grm1|14816|glutamate receptor, metabotropic 1	AF320126|Grm1|14816|glutamate receptor, metabotropic 1
mm9_v1_chr8_-_108861850_108861887	0.10953	CUACAGU	AK087515|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK076416|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK139226|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK019476|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	AK162894|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	BC043077|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral	NM_021491|Smpd3|58994|sphingomyelin phosphodiesterase 3, neutral
mm9_v1_chrX_-_153929935_153930011	0.108025	CUACAGU	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr10_-_70747929_70748034	0.107397	CUACAGU	AK144468|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK043167|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	BC019464|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	AK148364|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)	NM_145420|Ube2d1|216080|ubiquitin-conjugating enzyme E2D 1, UBC4/5 homolog (yeast)
mm9_v1_chr13_+_90229271_90229367	0.106357	CUACAGU	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr6_+_55401971_55401981	0.105609	CUACAGU	AK083108|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_001025372|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	NM_007407|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	AK042820|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr6_-_113841356_113841375	0.1046	CUACAGU	DQ406822|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK051287|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	BC075643|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_001036684|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr17_-_25410371_25410398	0.104259	CUACAGU	NM_001177610|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr4_+_125939622_125939671	0.103774	CUACAGU	AK151747|Trappc3|27096|trafficking protein particle complex 3	BC003736|Trappc3|27096|trafficking protein particle complex 3	NM_013718|Trappc3|27096|trafficking protein particle complex 3	AF041433|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr3_+_32428382_32428415	0.103766	CUACAGU	AK141611|Mfn1|67414|mitofusin 1	NM_024200|Mfn1|67414|mitofusin 1	AK018181|Mfn1|67414|mitofusin 1	AK220169|Mfn1|67414|mitofusin 1
mm9_v1_chr12_-_68323528_68323535	0.10227	CUACAGU	AK034513|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	AK137667|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_001193266|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_207010|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2
mm9_v1_chr7_+_90015842_90015842	0.100365	CUACAGU	NM_175366|Mex3b|108797|mex3 homolog B (C. elegans)
mm9_v1_chr13_+_98011057_98011069	0.0987826	CUACAGU	AK132173|Enc1|13803|ectodermal-neural cortex 1	NM_007930|Enc1|13803|ectodermal-neural cortex 1	AK044906|Enc1|13803|ectodermal-neural cortex 1	AK049187|Enc1|13803|ectodermal-neural cortex 1
mm9_v1_chr7_-_13404178_13404219	0.0982828	CUACAGU	BC139021|Zfp329|67230|zinc finger protein 329	BC139023|Zfp329|67230|zinc finger protein 329	BC072665|Zfp329|67230|zinc finger protein 329	AK013271|Zfp329|67230|zinc finger protein 329	AK014562|Zfp329|67230|zinc finger protein 329	AK051535|Zfp329|67230|zinc finger protein 329	NM_026046|Zfp329|67230|zinc finger protein 329
mm9_v1_chr17_-_63849928_63849928	0.0981915	CUACAGU	NM_015794|Fbxl17|50758|F-box and leucine-rich repeat protein 17
mm9_v1_chr9_-_45714959_45715007	0.0944284	CUACAGU	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr4_-_104782444_104782511	0.09311	CUACAGU	NM_178143|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138565|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit	BC138566|Prkaa2|108079|protein kinase, AMP-activated, alpha 2 catalytic subunit
mm9_v1_chr6_-_83781704_83781750	0.092195	CUACAGU	AK140686|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK159287|Paip2b|232164|poly(A) binding protein interacting protein 2B	NM_146169|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chr3_+_138405156_138405310	0.0910773	CUACAGU	NM_019571|Tspan5|56224|tetraspanin 5	AF121344|Tspan5|56224|tetraspanin 5	AK013350|Tspan5|56224|tetraspanin 5	BC058695|Tspan5|56224|tetraspanin 5	BC046784|Tspan5|56224|tetraspanin 5
mm9_v1_chr19_+_42245036_42245077	0.089798	CUACAGU	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr8_-_72566595_72566636	0.0897541	CUACAGU	AK018662|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK039196|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK162318|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK164005|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	AK081967|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	BC125568|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	BC132139|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	BC144990|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	NM_001167939|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)	NM_028993|Mau2|74549|MAU2 chromatid cohesion factor homolog (C. elegans)
mm9_v1_chr18_+_36942877_36943029	0.089682	CUACAGU	AK088789|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK014515|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK145003|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	AK077621|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	BC004596|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)	NM_080636|Hars2|70791|histidyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr2_+_60047917_60048030	0.0885545	CUACAGU	AK034109|March7|57438|membrane-associated ring finger (C3HC4) 7	AK143177|March7|57438|membrane-associated ring finger (C3HC4) 7	AK166666|March7|57438|membrane-associated ring finger (C3HC4) 7	AK168555|March7|57438|membrane-associated ring finger (C3HC4) 7	AF155739|March7|57438|membrane-associated ring finger (C3HC4) 7	NM_020575|March7|57438|membrane-associated ring finger (C3HC4) 7	AK167246|March7|57438|membrane-associated ring finger (C3HC4) 7
mm9_v1_chr9_-_114843103_114843123	0.0882519	CUACAGU	NM_175380|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr2_-_122436933_122437055	0.0881429	CUACAGU	BC003879|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK153450|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145862|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146052|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK151313|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK007325|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145914|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146111|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK152069|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	NM_025961|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm9_v1_chr18_+_61085283_61085301	0.0865443	CUACAGU	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr3_+_40549475_40549540	0.0854804	CUACAGU	BC012712|Hspa4l|18415|heat shock protein 4 like	AK144225|Hspa4l|18415|heat shock protein 4 like	AK032066|Hspa4l|18415|heat shock protein 4 like	BC110662|Hspa4l|18415|heat shock protein 4 like	BC057002|Hspa4l|18415|heat shock protein 4 like	NM_011020|Hspa4l|18415|heat shock protein 4 like	D49482|Hspa4l|18415|heat shock protein 4 like
mm9_v1_chr10_+_92623587_92623703	0.0850274	CUACAGU	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr10_+_52137324_52137453	0.0845944	CUACAGU	AK155620|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	NM_030250|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167939|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	AK167741|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC018372|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)	BC003223|Nus1|52014|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)
mm9_v1_chr16_-_91044623_91044646	0.0805501	CUACAGU	NM_026110|Gcfc1|67367|GC-rich sequence DNA-binding factor 1
mm9_v1_chr15_-_89004279_89004426	0.080286	CUACAGU	BC158086|Plxnb2|140570|plexin B2	BC172162|Plxnb2|140570|plexin B2	NM_001159521|Plxnb2|140570|plexin B2
mm9_v1_chr6_-_142650737_142650793	0.0790997	CUACAGU	D86037|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	D86038|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	AF003531|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	U97066|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_001044720|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_011511|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_021041|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_021042|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm9_v1_chr18_+_69504145_69504185	0.0737182	CUACAGU	AK051958|Tcf4|21413|transcription factor 4	NM_013685|Tcf4|21413|transcription factor 4	U16322|Tcf4|21413|transcription factor 4
mm9_v1_chr11_-_5641147_5641184	0.0737172	CUACAGU	AK166495|Urgcp|72046|upregulator of cell proliferation	AK033577|Urgcp|72046|upregulator of cell proliferation	NM_178623|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr4_-_70195952_70195978	0.0731065	CUACAGU	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr16_-_16359122_16359124	0.072839	CUACAGU	NM_001025947|Dnm1l|74006|dynamin 1-like	NM_152816|Dnm1l|74006|dynamin 1-like
mm9_v1_chr17_+_8994520_8994643	0.071793	CUACAGU	AK014090|Pde10a|23984|phosphodiesterase 10A	AY360383|Pde10a|23984|phosphodiesterase 10A	NM_011866|Pde10a|23984|phosphodiesterase 10A	AK147690|Pde10a|23984|phosphodiesterase 10A
mm9_v1_chr6_-_113991945_113992108	0.0709913	CUACAGU	AK147240|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	DQ406821|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147369|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147501|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_009723|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr14_+_22569752_22569797	0.0706125	CUACAGU	AK006211|Samd8|67630|sterile alpha motif domain containing 8	NM_026283|Samd8|67630|sterile alpha motif domain containing 8	BC116745|Samd8|67630|sterile alpha motif domain containing 8	BC116747|Samd8|67630|sterile alpha motif domain containing 8	AK015593|Samd8|67630|sterile alpha motif domain containing 8	BC100476|Samd8|67630|sterile alpha motif domain containing 8
mm9_v1_chr17_+_56465472_56465518	0.0699607	CUACAGU	NM_172132|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK078074|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK141879|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK129233|Kdm4b|193796|lysine (K)-specific demethylase 4B	BC007145|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK145151|Kdm4b|193796|lysine (K)-specific demethylase 4B
mm9_v1_chr6_+_15135505_15135508	0.0695152	CUACAGU	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr13_-_97440734_97440890	0.0693761	CUACAGU	AK159899|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	BC085083|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	AK048784|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	NM_008255|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr18_-_72510670_72510722	0.0674813	CUACAGU	AK157715|Dcc|13176|deleted in colorectal carcinoma	AK090377|Dcc|13176|deleted in colorectal carcinoma	NM_007831|Dcc|13176|deleted in colorectal carcinoma
mm9_v1_chr9_-_24307580_24307676	0.0674211	CUACAGU	NM_172920|Dpy19l1|244745|dpy-19-like 1 (C. elegans)
mm9_v1_chr11_+_51912319_51912329	0.0666279	CUACAGU	AK076110|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	NM_019411|Ppp2ca|19052|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm9_v1_chr2_-_162486882_162486956	0.064558	CUACAGU	AF244125|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	NM_021464|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr18_+_37460452_37460636	0.063619	CUACAGU	AK030570|Pcdhb3|93874|protocadherin beta 3	NM_053128|Pcdhb3|93874|protocadherin beta 3	BC079557|Pcdhb3|93874|protocadherin beta 3	AF326296|Pcdhb3|93874|protocadherin beta 3	AY013785|Pcdhb3|93874|protocadherin beta 3
mm9_v1_chr8_+_63111621_63111675	0.0626245	CUACAGU	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr13_-_12199109_12199211	0.0626179	CUACAGU	BC043140|Ryr2|20191|ryanodine receptor 2, cardiac	BC059061|Ryr2|20191|ryanodine receptor 2, cardiac	NM_023868|Ryr2|20191|ryanodine receptor 2, cardiac
mm9_v1_chr1_+_58643286_58643485	0.0618731	CUACAGU	BC028669|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	AK012320|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	NM_025597|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	AK138123|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	AK007930|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	BC036989|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	AK013608|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	AK009008|Ndufb3|66495|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3
mm9_v1_chr13_+_91600662_91600791	0.0618583	CUACAGU	BC002176|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024186|Ssbp2|66970|single-stranded DNA binding protein 2	NM_024272|Ssbp2|66970|single-stranded DNA binding protein 2	AK133699|Ssbp2|66970|single-stranded DNA binding protein 2	AK051840|Ssbp2|66970|single-stranded DNA binding protein 2	AK010220|Ssbp2|66970|single-stranded DNA binding protein 2	AY037837|Ssbp2|66970|single-stranded DNA binding protein 2	AK005150|Ssbp2|66970|single-stranded DNA binding protein 2	AK013177|Ssbp2|66970|single-stranded DNA binding protein 2	AY167988|Ssbp2|66970|single-stranded DNA binding protein 2
mm9_v1_chr10_-_94877824_94877916	0.061169	CUACAGU	U88327|Socs2|216233|suppressor of cytokine signaling 2	NM_001168657|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr13_+_24936973_24937045	0.0598267	CUACAGU	AK019624|D130043K22Rik|210108|RIKEN cDNA D130043K22 gene	NM_001081051|D130043K22Rik|210108|RIKEN cDNA D130043K22 gene	AK051381|D130043K22Rik|210108|RIKEN cDNA D130043K22 gene	AK122246|D130043K22Rik|210108|RIKEN cDNA D130043K22 gene
mm9_v1_chr5_+_89012596_89012599	0.0596661	CUACAGU	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr16_-_75766992_75767062	0.0594388	CUACAGU	BC039701|Hspa13|110920|heat shock protein 70 family, member 13	AK167839|Hspa13|110920|heat shock protein 70 family, member 13	BC094508|Hspa13|110920|heat shock protein 70 family, member 13	BC085181|Hspa13|110920|heat shock protein 70 family, member 13	AK049011|Hspa13|110920|heat shock protein 70 family, member 13	AK021006|Hspa13|110920|heat shock protein 70 family, member 13	AK030553|Hspa13|110920|heat shock protein 70 family, member 13	AK034643|Hspa13|110920|heat shock protein 70 family, member 13	NM_030201|Hspa13|110920|heat shock protein 70 family, member 13
mm9_v1_chr15_-_77137425_77137482	0.0594012	CUACAGU	AK139555|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110827|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_053104|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_175387|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr2_-_166888514_166888514	0.0585727	CUACAGU	AK147564|Znfx1|98999|zinc finger, NFX1-type containing 1	AK147652|Znfx1|98999|zinc finger, NFX1-type containing 1	NM_001033196|Znfx1|98999|zinc finger, NFX1-type containing 1
mm9_v1_chr2_+_121782185_121782265	0.0582401	CUACAGU	AK033382|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	NM_212450|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK169248|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK044805|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK053513|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC066219|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK030085|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK041422|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK049463|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	AK160431|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	BC052660|Ctdspl2|329506|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm9_v1_chr4_-_133843139_133843188	0.0575375	CUACAGU	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr7_+_107376116_107376219	0.055466	CUACAGU	NM_027629|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK039189|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK040513|Pgm2l1|70974|phosphoglucomutase 2-like 1	BC076571|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr3_+_27883092_27883235	0.0551364	CUACAGU	NM_008875|Pld1|18805|phospholipase D1	BC068144|Pld1|18805|phospholipase D1
mm9_v1_chr17_+_71553920_71554003	0.0546057	CUACAGU	AK165218|Lpin2|64898|lipin 2	AK050018|Lpin2|64898|lipin 2	NM_001164885|Lpin2|64898|lipin 2
mm9_v1_chr10_+_60938535_60938600	0.0527703	CUACAGU	AK139384|Lrrc20|216011|leucine rich repeat containing 20	AK136380|Lrrc20|216011|leucine rich repeat containing 20	AK145920|Lrrc20|216011|leucine rich repeat containing 20	AK150142|Lrrc20|216011|leucine rich repeat containing 20	BC036304|Lrrc20|216011|leucine rich repeat containing 20	NM_153542|Lrrc20|216011|leucine rich repeat containing 20	AK150246|Lrrc20|216011|leucine rich repeat containing 20
mm9_v1_chr8_+_109817355_109817761	0.0527525	CUACAGU	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr10_+_94977721_94977835	0.0526023	CUACAGU	AK005302|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK161968|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AK005788|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC067069|Ube2n|93765|ubiquitin-conjugating enzyme E2N	NM_080560|Ube2n|93765|ubiquitin-conjugating enzyme E2N	AY039837|Ube2n|93765|ubiquitin-conjugating enzyme E2N	Y09873|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC034898|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC052203|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC132630|Ube2n|93765|ubiquitin-conjugating enzyme E2N	BC138211|Ube2n|93765|ubiquitin-conjugating enzyme E2N
mm9_v1_chr18_+_32322742_32322855	0.0522823	CUACAGU	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr15_-_89011113_89011248	0.0520767	CUACAGU	BC031202|Plxnb2|140570|plexin B2	AK154627|Plxnb2|140570|plexin B2	BC157960|Plxnb2|140570|plexin B2	BC157961|Plxnb2|140570|plexin B2	AK147538|Plxnb2|140570|plexin B2	NM_138749|Plxnb2|140570|plexin B2
mm9_v1_chr13_+_58907953_58907974	0.0516239	CUACAGU	NM_008745|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr7_+_146271899_146271899	0.0514311	CUACAGU	AK165694|Dpysl4|26757|dihydropyrimidinase-like 4	NM_011993|Dpysl4|26757|dihydropyrimidinase-like 4
mm9_v1_chr13_-_8870975_8870975	0.0507032	CUACAGU	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr10_-_59414516_59414582	0.0503856	CUACAGU	BC131992|Ddit4|74747|DNA-damage-inducible transcript 4	BC132645|Ddit4|74747|DNA-damage-inducible transcript 4	BC145370|Ddit4|74747|DNA-damage-inducible transcript 4	AK017926|Ddit4|74747|DNA-damage-inducible transcript 4	NM_029083|Ddit4|74747|DNA-damage-inducible transcript 4	AK081046|Ddit4|74747|DNA-damage-inducible transcript 4
mm9_v1_chr4_+_59202363_59202463	0.0494581	CUACAGU	AK138848|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	BC050828|Ugcg|22234|UDP-glucose ceramide glucosyltransferase	NM_011673|Ugcg|22234|UDP-glucose ceramide glucosyltransferase
mm9_v1_chr8_+_97125835_97125965	0.0493919	CUACAGU	NM_026274|Rspry1|67610|ring finger and SPRY domain containing 1	BC054121|Rspry1|67610|ring finger and SPRY domain containing 1	AK150941|Rspry1|67610|ring finger and SPRY domain containing 1	AK152435|Rspry1|67610|ring finger and SPRY domain containing 1	AK172461|Rspry1|67610|ring finger and SPRY domain containing 1	AK166167|Rspry1|67610|ring finger and SPRY domain containing 1	AK151018|Rspry1|67610|ring finger and SPRY domain containing 1	AK152024|Rspry1|67610|ring finger and SPRY domain containing 1	AK156697|Rspry1|67610|ring finger and SPRY domain containing 1	AK146028|Rspry1|67610|ring finger and SPRY domain containing 1	AK172567|Rspry1|67610|ring finger and SPRY domain containing 1	AK032416|Rspry1|67610|ring finger and SPRY domain containing 1	AK141443|Rspry1|67610|ring finger and SPRY domain containing 1
mm9_v1_chr19_+_3851772_3851838	0.0493537	CUACAGU	AK005057|Chka|12660|choline kinase alpha	NM_001025566|Chka|12660|choline kinase alpha	NM_013490|Chka|12660|choline kinase alpha	AK014174|Chka|12660|choline kinase alpha	BC060218|Chka|12660|choline kinase alpha	AK052056|Chka|12660|choline kinase alpha	AK053818|Chka|12660|choline kinase alpha	AK166465|Chka|12660|choline kinase alpha	AK166641|Chka|12660|choline kinase alpha
mm9_v1_chr5_+_93696566_93696638	0.0486984	CUACAGU	NM_007635|Ccng2|12452|cyclin G2	AK170651|Ccng2|12452|cyclin G2	AF005885|Ccng2|12452|cyclin G2
mm9_v1_chr19_+_36629128_36629172	0.04856	CUACAGU	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr11_-_74537877_74537918	0.0480987	CUACAGU	NM_013625|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr6_-_113481546_113481673	0.0476241	CUACAGU	AK020058|Tmem111|66087|transmembrane protein 111	AK046264|Tmem111|66087|transmembrane protein 111	BC004641|Tmem111|66087|transmembrane protein 111	AK075595|Tmem111|66087|transmembrane protein 111	NM_175101|Tmem111|66087|transmembrane protein 111	AK164779|Tmem111|66087|transmembrane protein 111
mm9_v1_chrX_-_143988623_143988623	0.0465923	CUACAGU	NM_001081173|Lrch2|210297|leucine-rich repeats and calponin homology (CH) domain containing 2
mm9_v1_chr10_-_67011689_67011747	0.0464331	CUACAGU	BC057106|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	BC058407|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	AK155334|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	NM_001005419|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase
mm9_v1_chr8_-_75094915_75095130	0.0461468	CUACAGU	BC037511|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152451|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK152748|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK035786|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK151539|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	NM_172396|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AF140607|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC055692|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK009731|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK148562|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK149156|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK169625|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK018610|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	BC060963|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene	AK206814|9130011J15Rik|66818|RIKEN cDNA 9130011J15 gene
mm9_v1_chr2_+_119500777_119500991	0.0459012	CUACAGU	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr13_+_81022644_81022695	0.0458849	CUACAGU	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr11_-_6344445_6344467	0.045805	CUACAGU	NM_029938|H2afv|77605|H2A histone family, member V	AK155105|H2afv|77605|H2A histone family, member V
mm9_v1_chr19_+_37624879_37624965	0.0451344	CUACAGU	AK151524|Exoc6|107371|exocyst complex component 6	AK151838|Exoc6|107371|exocyst complex component 6	NM_175353|Exoc6|107371|exocyst complex component 6	AK082881|Exoc6|107371|exocyst complex component 6	BC026859|Exoc6|107371|exocyst complex component 6
mm9_v1_chr17_+_73185961_73186089	0.0438073	CUACAGU	AK167998|Ypel5|383295|yippee-like 5 (Drosophila)	AK165943|Ypel5|383295|yippee-like 5 (Drosophila)	AK169241|Ypel5|383295|yippee-like 5 (Drosophila)	AK049096|Ypel5|383295|yippee-like 5 (Drosophila)	AK171010|Ypel5|383295|yippee-like 5 (Drosophila)	NM_027166|Ypel5|383295|yippee-like 5 (Drosophila)	AK046281|Ypel5|383295|yippee-like 5 (Drosophila)	AK049644|Ypel5|383295|yippee-like 5 (Drosophila)	AK169986|Ypel5|383295|yippee-like 5 (Drosophila)	AK137446|Ypel5|383295|yippee-like 5 (Drosophila)	AK010201|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr6_-_58974400_58974495	0.0423395	CUACAGU	BC005554|Fam13a|58909|family with sequence similarity 13, member A	BC060978|Fam13a|58909|family with sequence similarity 13, member A	AK052421|Fam13a|58909|family with sequence similarity 13, member A	BC054053|Fam13a|58909|family with sequence similarity 13, member A	AJ510136|Fam13a|58909|family with sequence similarity 13, member A	AK054311|Fam13a|58909|family with sequence similarity 13, member A	BC080861|Fam13a|58909|family with sequence similarity 13, member A	NM_153574|Fam13a|58909|family with sequence similarity 13, member A
mm9_v1_chr4_+_97444312_97444317	0.0411475	CUACAGU	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr2_-_34610751_34610751	0.0405899	CUACAGU	BC060123|Gapvd1|66691|GTPase activating protein and VPS9 domains 1	NM_025709|Gapvd1|66691|GTPase activating protein and VPS9 domains 1
mm9_v1_chr7_-_74517624_74517743	0.040532	CUACAGU	AK132678|Mef2a|17258|myocyte enhancer factor 2A	BC019116|Mef2a|17258|myocyte enhancer factor 2A	BC096598|Mef2a|17258|myocyte enhancer factor 2A	BC061128|Mef2a|17258|myocyte enhancer factor 2A	AK052385|Mef2a|17258|myocyte enhancer factor 2A	AK153751|Mef2a|17258|myocyte enhancer factor 2A	NM_001033713|Mef2a|17258|myocyte enhancer factor 2A
mm9_v1_chrX_-_101396356_101396482	0.0395204	CUACAGU	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chrX_+_53985133_53985235	0.0388685	CUACAGU	NM_001077361|Fhl1|14199|four and a half LIM domains 1	AK158966|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr15_+_79059802_79059887	0.0383646	CUACAGU	NM_001045558|Pick1|18693|protein interacting with C kinase 1	AK090155|Pick1|18693|protein interacting with C kinase 1	AK050224|Pick1|18693|protein interacting with C kinase 1	BC023088|Pick1|18693|protein interacting with C kinase 1	BC048788|Pick1|18693|protein interacting with C kinase 1	AK162724|Pick1|18693|protein interacting with C kinase 1
mm9_v1_chr8_+_97508270_97508298	0.0367222	CUACAGU	AK141886|Gpr56|14766|G protein-coupled receptor 56	NM_018882|Gpr56|14766|G protein-coupled receptor 56
mm9_v1_chr18_+_33098694_33098843	0.0364409	CUACAGU	NM_009793|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	AK030219|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	BC070420|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr9_-_52487410_52487541	0.0358807	CUACAGU	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr10_+_93977597_93977699	0.0348781	CUACAGU	NM_172051|Tmcc3|319880|transmembrane and coiled coil domains 3	AK132545|Tmcc3|319880|transmembrane and coiled coil domains 3	BC095951|Tmcc3|319880|transmembrane and coiled coil domains 3	AK083129|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr12_+_59312790_59312790	0.0346855	CUACAGU	AK046464|Sstr1|20605|somatostatin receptor 1	NM_009216|Sstr1|20605|somatostatin receptor 1
mm9_v1_chr1_-_63160764_63160840	0.0344894	CUACAGU	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr5_-_139470895_139470908	0.0344238	CUACAGU	AY324648|Pdgfa|18590|platelet derived growth factor, alpha	BC003817|Pdgfa|18590|platelet derived growth factor, alpha	NM_008808|Pdgfa|18590|platelet derived growth factor, alpha
mm9_v1_chr3_-_68930928_68931049	0.0341569	CUACAGU	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr9_-_70504934_70505009	0.0341267	CUACAGU	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr6_-_98978185_98978383	0.0339927	CUACAGU	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr5_+_14025270_14025485	0.0332756	CUACAGU	AK141295|Sema3e|20349|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	NM_011348|Sema3e|20349|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	Z93947|Sema3e|20349|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	Z93948|Sema3e|20349|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	BC057956|Sema3e|20349|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	AK142340|Sema3e|20349|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	AK159214|Sema3e|20349|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm9_v1_chr14_-_21365595_21365800	0.0328723	CUACAGU	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr11_+_101443529_101443628	0.0328388	CUACAGU	AK146019|Tmem106a|217203|transmembrane protein 106A	NM_144830|Tmem106a|217203|transmembrane protein 106A	AK154217|Tmem106a|217203|transmembrane protein 106A	AK150285|Tmem106a|217203|transmembrane protein 106A	AK152741|Tmem106a|217203|transmembrane protein 106A	AK151842|Tmem106a|217203|transmembrane protein 106A	BC033268|Tmem106a|217203|transmembrane protein 106A	AK170900|Tmem106a|217203|transmembrane protein 106A	AK172282|Tmem106a|217203|transmembrane protein 106A	AK149650|Tmem106a|217203|transmembrane protein 106A	AK168437|Tmem106a|217203|transmembrane protein 106A	AK169081|Tmem106a|217203|transmembrane protein 106A
mm9_v1_chr13_-_46060325_46060353	0.0325387	CUACAGU	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr11_+_75401554_75401692	0.0324722	CUACAGU	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr6_-_94233855_94233910	0.0319513	CUACAGU	AK046635|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC095943|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001029850|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_010367|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK147358|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr18_-_46756837_46757206	0.0318859	CUACAGU	AK202734|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK180182|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK029576|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK076210|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK147412|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	AK013936|Tmed7|66676|transmembrane emp24 protein transport domain containing 7	NM_025698|Tmed7|66676|transmembrane emp24 protein transport domain containing 7
mm9_v1_chr12_+_66137309_66137322	0.031879	CUACAGU	AK154170|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)	NM_177806|Prpf39|328110|PRP39 pre-mRNA processing factor 39 homolog (yeast)
mm9_v1_chr2_-_73749317_73749415	0.0314073	CUACAGU	AK077930|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	NM_175015|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	AK087955|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
mm9_v1_chr9_-_58160966_58161035	0.0313569	CUACAGU	BC098243|Loxl1|16949|lysyl oxidase-like 1	BC037999|Loxl1|16949|lysyl oxidase-like 1	AK078512|Loxl1|16949|lysyl oxidase-like 1	NM_010729|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr4_+_137418151_137418162	0.0310696	CUACAGU	AK134088|Ece1|230857|endothelin converting enzyme 1	NM_199307|Ece1|230857|endothelin converting enzyme 1
mm9_v1_chr9_+_107302196_107302210	0.0306916	CUACAGU	BC056389|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174047|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174048|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174049|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_001174050|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2	NM_020263|Cacna2d2|56808|calcium channel, voltage-dependent, alpha 2/delta subunit 2
mm9_v1_chr5_+_20930720_20930881	0.0297821	CUACAGU	NM_177869|Fam185a|330050|family with sequence similarity 185, member A	AK030922|Fam185a|330050|family with sequence similarity 185, member A	AK076256|Fam185a|330050|family with sequence similarity 185, member A	BC055342|Fam185a|330050|family with sequence similarity 185, member A
mm9_v1_chr6_+_108733041_108733073	0.0292747	CUACAGU	NM_026011|Arl8b|67166|ADP-ribosylation factor-like 8B	AK030689|Arl8b|67166|ADP-ribosylation factor-like 8B
mm9_v1_chr12_-_66066481_66066522	0.0289271	CUACAGU	BC018469|Klhl28|66689|kelch-like 28 (Drosophila)	BC037017|Klhl28|66689|kelch-like 28 (Drosophila)	AK002637|Klhl28|66689|kelch-like 28 (Drosophila)	AK013278|Klhl28|66689|kelch-like 28 (Drosophila)	AK012778|Klhl28|66689|kelch-like 28 (Drosophila)	AK014466|Klhl28|66689|kelch-like 28 (Drosophila)	NM_025707|Klhl28|66689|kelch-like 28 (Drosophila)
mm9_v1_chr4_-_131394135_131394216	0.0288622	CUACAGU	BC080736|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	BC048694|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK052720|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	D88187|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK148515|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_001083119|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_011214|Ptpru|19273|protein tyrosine phosphatase, receptor type, U
mm9_v1_chr12_-_88488851_88488917	0.028435	CUACAGU	AK076813|Pomt2|217734|protein-O-mannosyltransferase 2	AY090481|Pomt2|217734|protein-O-mannosyltransferase 2	NM_153415|Pomt2|217734|protein-O-mannosyltransferase 2	AK085703|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr10_-_94878117_94878117	0.0277731	CUACAGU	NM_001168656|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr5_+_110564841_110564902	0.0275538	CUACAGU	NM_172717|Chfr|231600|checkpoint with forkhead and ring finger domains	AK039281|Chfr|231600|checkpoint with forkhead and ring finger domains	AK133154|Chfr|231600|checkpoint with forkhead and ring finger domains	AK154038|Chfr|231600|checkpoint with forkhead and ring finger domains	AK048930|Chfr|231600|checkpoint with forkhead and ring finger domains	AK147892|Chfr|231600|checkpoint with forkhead and ring finger domains	AK077629|Chfr|231600|checkpoint with forkhead and ring finger domains	AK148436|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155295|Chfr|231600|checkpoint with forkhead and ring finger domains	AK155525|Chfr|231600|checkpoint with forkhead and ring finger domains	AK052473|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169193|Chfr|231600|checkpoint with forkhead and ring finger domains	BC049792|Chfr|231600|checkpoint with forkhead and ring finger domains	AK169182|Chfr|231600|checkpoint with forkhead and ring finger domains
mm9_v1_chr5_+_125921888_125921947	0.0271861	CUACAGU	NM_029752|Bri3bp|76809|Bri3 binding protein
mm9_v1_chr3_-_63768461_63768654	0.0271395	CUACAGU	AK144703|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK135092|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC063104|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	AK136323|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	BC054395|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1	NM_015728|Slc33a1|11416|solute carrier family 33 (acetyl-CoA transporter), member 1
mm9_v1_chr11_+_83116148_83116241	0.0269732	CUACAGU	AK138434|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_001035854|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_027915|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK030505|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	BC046772|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK032617|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit
mm9_v1_chr3_+_157197301_157197382	0.0268553	CUACAGU	AK150291|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK152536|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168613|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167983|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167766|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC049115|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168162|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169335|Zranb2|53861|zinc finger, RAN-binding domain containing 2	NM_017381|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146275|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK160862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167756|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168033|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC132547|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC138575|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK166534|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169114|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146854|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AF133818|Zranb2|53861|zinc finger, RAN-binding domain containing 2
mm9_v1_chr2_+_128793137_128793209	0.0264473	CUACAGU	AK050503|Zc3h6|78751|zinc finger CCCH type containing 6	NM_178404|Zc3h6|78751|zinc finger CCCH type containing 6	AK013610|Zc3h6|78751|zinc finger CCCH type containing 6	AK019345|Zc3h6|78751|zinc finger CCCH type containing 6	AK039171|Zc3h6|78751|zinc finger CCCH type containing 6	AK014766|Zc3h6|78751|zinc finger CCCH type containing 6	BC058173|Zc3h6|78751|zinc finger CCCH type containing 6
mm9_v1_chr6_-_122692754_122692762	0.0261854	CUACAGU	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr4_-_116300533_116300555	0.0251674	CUACAGU	AK132690|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	AK161367|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	AF034610|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)	NM_016777|Nasp|50927|nuclear autoantigenic sperm protein (histone-binding)
mm9_v1_chr15_+_75740152_75740190	0.0249894	CUACAGU	AK051177|Tigd5|105734|tigger transposable element derived 5	BC099838|Tigd5|105734|tigger transposable element derived 5	NM_178646|Tigd5|105734|tigger transposable element derived 5	AK036241|Tigd5|105734|tigger transposable element derived 5	AK086663|Tigd5|105734|tigger transposable element derived 5	AK165093|Tigd5|105734|tigger transposable element derived 5	BC138289|Tigd5|105734|tigger transposable element derived 5
mm9_v1_chr19_+_34658016_34658052	0.0246113	CUACAGU	AK153226|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	NM_010501|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	AK077459|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	AK151032|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	BC089563|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	L32974|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3	BC003804|Ifit3|15959|interferon-induced protein with tetratricopeptide repeats 3
mm9_v1_chr19_+_42164922_42164992	0.0244135	CUACAGU	NM_145501|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	AK030725|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC110363|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC089309|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha
mm9_v1_chr11_+_72861327_72861399	0.0242584	CUACAGU	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chr2_+_128644032_128644119	0.0233676	CUACAGU	NM_028248|Tmem87b|72477|transmembrane protein 87B	AK050203|Tmem87b|72477|transmembrane protein 87B	AK166991|Tmem87b|72477|transmembrane protein 87B	AK164504|Tmem87b|72477|transmembrane protein 87B	AK171811|Tmem87b|72477|transmembrane protein 87B	AK172611|Tmem87b|72477|transmembrane protein 87B	BC031488|Tmem87b|72477|transmembrane protein 87B	AK011959|Tmem87b|72477|transmembrane protein 87B
mm9_v1_chr10_-_58138401_58138443	0.0225337	CUACAGU	BC068315|Edar|13608|ectodysplasin-A receptor	AF160502|Edar|13608|ectodysplasin-A receptor	NM_010100|Edar|13608|ectodysplasin-A receptor
mm9_v1_chr5_-_9161670_9161791	0.0225173	CUACAGU	AK046201|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK078015|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC060109|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK029147|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK031887|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC045141|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	BC010272|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	U70017|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK040107|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK145803|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK033208|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK039563|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK030508|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	AK160595|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	NM_001110327|Dmtf1|23857|cyclin D binding myb-like transcription factor 1	NM_011806|Dmtf1|23857|cyclin D binding myb-like transcription factor 1
mm9_v1_chr3_+_107081775_107081924	0.0216127	CUACAGU	NM_026774|Hbxip|68576|hepatitis B virus x interacting protein	AK146289|Hbxip|68576|hepatitis B virus x interacting protein
mm9_v1_chr8_-_37676995_37677010	0.0206807	CUACAGU	AK162413|Dlc1|50768|deleted in liver cancer 1	NM_015802|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr10_+_59740373_59740429	0.0199648	CUACAGU	NM_001146120|Psap|19156|prosaposin	NM_001146121|Psap|19156|prosaposin	NM_001146122|Psap|19156|prosaposin	NM_001146123|Psap|19156|prosaposin	NM_011179|Psap|19156|prosaposin	AK167902|Psap|19156|prosaposin	AK151686|Psap|19156|prosaposin	AK152203|Psap|19156|prosaposin
mm9_v1_chrX_-_56387565_56387612	0.0192199	CUACAGU	BC018238|Fgf13|14168|fibroblast growth factor 13	NM_010200|Fgf13|14168|fibroblast growth factor 13
mm9_v1_chr3_-_94690822_94690886	0.0189045	CUACAGU	BC008241|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	U65636|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	AK168340|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	AK077448|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	AK156624|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	AK137044|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	AK161348|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	AK168265|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4	NM_008945|Psmb4|19172|proteasome (prosome, macropain) subunit, beta type 4
mm9_v1_chrX_-_16896428_16896493	0.0188943	CUACAGU	BC120659|Efhc2|74405|EF-hand domain (C-terminal) containing 2	BC125625|Efhc2|74405|EF-hand domain (C-terminal) containing 2	AK016714|Efhc2|74405|EF-hand domain (C-terminal) containing 2	AK029501|Efhc2|74405|EF-hand domain (C-terminal) containing 2	NM_028916|Efhc2|74405|EF-hand domain (C-terminal) containing 2
mm9_v1_chr12_-_92828896_92828926	0.0187076	CUACAGU	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr2_+_155576943_155577133	0.0185891	CUACAGU	NM_011171|Procr|19124|protein C receptor, endothelial	AK167302|Procr|19124|protein C receptor, endothelial	X63748|Procr|19124|protein C receptor, endothelial	L39017|Procr|19124|protein C receptor, endothelial	BC028755|Procr|19124|protein C receptor, endothelial	AK136541|Procr|19124|protein C receptor, endothelial	CT010175|Procr|19124|protein C receptor, endothelial
mm9_v1_chr11_+_115243203_115243359	0.0184881	CUACAGU	NM_001080929|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC144823|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC150668|Cdr2l|237988|cerebellar degeneration-related protein 2-like
mm9_v1_chr9_+_21420612_21420824	0.0184174	CUACAGU	BC079560|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174078|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174079|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_011417|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK147285|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK166837|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK160825|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK135308|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK142137|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC061214|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC060229|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC023830|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC032162|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC054056|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC014760|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK051530|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm9_v1_chr3_-_126646303_126646303	0.0181481	CUACAGU	BC043123|Ank2|109676|ankyrin 2, brain	NM_001034168|Ank2|109676|ankyrin 2, brain
mm9_v1_chrX_+_53984926_53984997	0.0181472	CUACAGU	AK128904|Fhl1|14199|four and a half LIM domains 1	NM_010211|Fhl1|14199|four and a half LIM domains 1	U77039|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr16_+_33380860_33381006	0.0175033	CUACAGU	NM_011749|Zfp148|22661|zinc finger protein 148	AF316548|Zfp148|22661|zinc finger protein 148	X98096|Zfp148|22661|zinc finger protein 148	BC026144|Zfp148|22661|zinc finger protein 148
mm9_v1_chr12_+_87027595_87027673	0.0174502	CUACAGU	AK018587|Batf|53314|basic leucine zipper transcription factor, ATF-like	AF017021|Batf|53314|basic leucine zipper transcription factor, ATF-like	NM_016767|Batf|53314|basic leucine zipper transcription factor, ATF-like
mm9_v1_chr1_-_172145521_172145534	0.0169892	CUACAGU	BC058732|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	NM_010633|Uhmk1|16589|U2AF homology motif (UHM) kinase 1	AK013347|Uhmk1|16589|U2AF homology motif (UHM) kinase 1
mm9_v1_chr18_+_37571327_37571327	0.0169362	CUACAGU	NM_053135|Pcdhb10|93881|protocadherin beta 10
mm9_v1_chrX_+_68809163_68809181	0.0164079	CUACAGU	NM_008253|Hmgb3|15354|high mobility group box 3	AK032163|Hmgb3|15354|high mobility group box 3
mm9_v1_chr19_+_5689130_5689130	0.016165	CUACAGU	BC095963|Map3k11|26403|mitogen-activated protein kinase kinase kinase 11	NM_022012|Map3k11|26403|mitogen-activated protein kinase kinase kinase 11
mm9_v1_chr11_+_42233258_42233286	0.0156636	CUACAGU	AK090279|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	NM_008070|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145973|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	BC145975|Gabrb2|14401|gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
mm9_v1_chr16_+_32877857_32877985	0.0150434	CUACAGU	NM_001159349|Fyttd1|69823|forty-two-three domain containing 1	NM_027226|Fyttd1|69823|forty-two-three domain containing 1	AK139638|Fyttd1|69823|forty-two-three domain containing 1	AK161252|Fyttd1|69823|forty-two-three domain containing 1	AK008130|Fyttd1|69823|forty-two-three domain containing 1	AK050479|Fyttd1|69823|forty-two-three domain containing 1	AK157602|Fyttd1|69823|forty-two-three domain containing 1	AK166032|Fyttd1|69823|forty-two-three domain containing 1	AK170511|Fyttd1|69823|forty-two-three domain containing 1	AK014447|Fyttd1|69823|forty-two-three domain containing 1	BC010204|Fyttd1|69823|forty-two-three domain containing 1	AK050448|Fyttd1|69823|forty-two-three domain containing 1	AK165633|Fyttd1|69823|forty-two-three domain containing 1	BC028253|Fyttd1|69823|forty-two-three domain containing 1	AK029785|Fyttd1|69823|forty-two-three domain containing 1	AJ344096|Fyttd1|69823|forty-two-three domain containing 1
mm9_v1_chr1_-_135557934_135557977	0.0147723	CUACAGU	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr1_-_54983211_54983245	0.01444	CUACAGU	AK038343|Ankrd44|329154|ankyrin repeat domain 44	NM_001081433|Ankrd44|329154|ankyrin repeat domain 44
mm9_v1_chr8_-_72298760_72298809	0.014096	CUACAGU	BC138224|Zfp866|330788|zinc finger protein 866	BC138227|Zfp866|330788|zinc finger protein 866	BC117846|Zfp866|330788|zinc finger protein 866	BC117847|Zfp866|330788|zinc finger protein 866	BC057095|Zfp866|330788|zinc finger protein 866	AK052363|Zfp866|330788|zinc finger protein 866	AK140357|Zfp866|330788|zinc finger protein 866	AK137334|Zfp866|330788|zinc finger protein 866	NM_177899|Zfp866|330788|zinc finger protein 866
mm9_v1_chr2_+_152987036_152987075	0.0138094	CUACAGU	NM_133847|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK083541|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC116320|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK035622|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr15_-_78360039_78360054	0.0135114	CUACAGU	DQ002399|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	NM_028331|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	BC071187|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	AK154407|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6
mm9_v1_chr11_+_110927475_110927548	0.0132612	CUACAGU	AK044915|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	NM_008425|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	X73052|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2
mm9_v1_chr8_-_35209773_35209872	0.0129517	CUACAGU	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr1_+_5578546_5578692	0.0128537	CUACAGU	AK039151|Oprk1|18387|opioid receptor, kappa 1	L11065|Oprk1|18387|opioid receptor, kappa 1	NM_011011|Oprk1|18387|opioid receptor, kappa 1	BC116795|Oprk1|18387|opioid receptor, kappa 1	BC119026|Oprk1|18387|opioid receptor, kappa 1	BC144731|Oprk1|18387|opioid receptor, kappa 1	S81111|Oprk1|18387|opioid receptor, kappa 1
mm9_v1_chr11_+_69659873_69659874	0.0122274	CUACAGU	AK075841|Plscr3|70310|phospholipid scramblase 3	NM_001168497|Plscr3|70310|phospholipid scramblase 3
mm9_v1_chr10_-_81090257_81090352	0.012188	CUACAGU	AK013316|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)	BC052763|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)	NM_181586|Sirt6|50721|sirtuin 6 (silent mating type information regulation 2, homolog) 6 (S. cerevisiae)
mm9_v1_chr14_-_27489331_27489368	0.0117087	CUACAGU	BC064450|Pde12|211948|phosphodiesterase 12	NM_178668|Pde12|211948|phosphodiesterase 12	AK161083|Pde12|211948|phosphodiesterase 12
mm9_v1_chr17_-_30024821_30024837	0.0115903	CUACAGU	NM_001081160|Mdga1|74762|MAM domain containing glycosylphosphatidylinositol anchor 1
mm9_v1_chr8_-_24367395_24367561	0.0110023	CUACAGU	BC058523|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK158227|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC019697|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AB041568|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK150696|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC016894|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC103796|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	BC093518|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK077582|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK152606|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK048175|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK170129|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK089856|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK150462|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK151353|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK152520|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	AK153213|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	NM_001042484|Golga7|57437|golgi autoantigen, golgin subfamily a, 7	NM_020585|Golga7|57437|golgi autoantigen, golgin subfamily a, 7
mm9_v1_chrX_+_126284271_126284381	0.0108312	CUACAGU	AK153986|Diap2|54004|diaphanous homolog 2 (Drosophila)	NM_172493|Diap2|54004|diaphanous homolog 2 (Drosophila)	AK088648|Diap2|54004|diaphanous homolog 2 (Drosophila)	AY312280|Diap2|54004|diaphanous homolog 2 (Drosophila)	BC100759|Diap2|54004|diaphanous homolog 2 (Drosophila)
mm9_v1_chr11_-_5662259_5662400	0.0102273	CUACAGU	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr9_+_96096690_96096766	0.0100859	CUACAGU	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr12_+_82960953_82961016	0.00947061	CUACAGU	NM_018814|Pcnx|54604|pecanex homolog (Drosophila)
mm9_v1_chr11_-_71949346_71949391	0.00933	CUACAGU	AK147444|Pitpnm3|327958|PITPNM family member 3	NM_001024927|Pitpnm3|327958|PITPNM family member 3	NM_001081641|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr2_+_4322020_4322021	0.00888781	CUACAGU	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr3_+_94217197_94217322	0.00725039	CUACAGU	BC057030|Tdrkh|72634|tudor and KH domain containing protein	BC031886|Tdrkh|72634|tudor and KH domain containing protein	BC049363|Tdrkh|72634|tudor and KH domain containing protein	NM_028307|Tdrkh|72634|tudor and KH domain containing protein
mm9_v1_chr15_+_79059603_79059603	0.00607145	CUACAGU	NM_008837|Pick1|18693|protein interacting with C kinase 1
mm9_v1_chr3_-_53461276_53461276	0.00472944	CUACAGU	AB236662|Frem2|242022|Fras1 related extracellular matrix protein 2	NM_172862|Frem2|242022|Fras1 related extracellular matrix protein 2
mm9_v1_chr4_-_109149038_109149266	0.00466663	CUACAGU	BC010299|Rnf11|29864|ring finger protein 11	NM_013876|Rnf11|29864|ring finger protein 11	AK014254|Rnf11|29864|ring finger protein 11
mm9_v1_chr4_+_124743933_124743973	0.00453461	CUACAGU	AK010794|Snip1|76793|Smad nuclear interacting protein 1	AK040571|Snip1|76793|Smad nuclear interacting protein 1	AK049254|Snip1|76793|Smad nuclear interacting protein 1	AK049318|Snip1|76793|Smad nuclear interacting protein 1	AK143801|Snip1|76793|Smad nuclear interacting protein 1	NM_175246|Snip1|76793|Smad nuclear interacting protein 1	AK078163|Snip1|76793|Smad nuclear interacting protein 1	AK132768|Snip1|76793|Smad nuclear interacting protein 1	BC064067|Snip1|76793|Smad nuclear interacting protein 1
mm9_v1_chr13_+_54723144_54723248	0.00416065	CUACAGU	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr13_+_73674194_73674271	0.00336567	CUACAGU	BC054119|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	NM_010020|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AK032629|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AK136885|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	U16265|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	AF109072|Slc6a3|13162|solute carrier family 6 (neurotransmitter transporter, dopamine), member 3
mm9_v1_chr16_-_21694608_21694737	0.002569	CUACAGU	AK051892|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK044207|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK053253|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC072629|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC052490|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	NM_001001881|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene
mm9_v1_chr3_-_19062922_19063101	0.00231365	CUACAGU	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chr4_-_94718846_94718914	0.000592072	CUACAGU	BC021888|Jun|16476|Jun oncogene	BC094032|Jun|16476|Jun oncogene	J04115|Jun|16476|Jun oncogene	AK132019|Jun|16476|Jun oncogene	AK140911|Jun|16476|Jun oncogene	AK159196|Jun|16476|Jun oncogene	AK133722|Jun|16476|Jun oncogene	AK135023|Jun|16476|Jun oncogene	AK133867|Jun|16476|Jun oncogene	AK159220|Jun|16476|Jun oncogene	NM_010591|Jun|16476|Jun oncogene
mm9_v1_chr18_-_37803782_37803859	0.000330738	CUACAGU	BC029673|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AF144562|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK075700|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK029380|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK076362|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK089054|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_175770|Taf7|24074|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr10_-_114622068_114622080	0.000115397	CUACAGU	BC120514|Tph2|216343|tryptophan hydroxylase 2	BC125430|Tph2|216343|tryptophan hydroxylase 2	AY090565|Tph2|216343|tryptophan hydroxylase 2	NM_173391|Tph2|216343|tryptophan hydroxylase 2
mm9_v1_chr1_+_165992203_165992294	0.000114722	CUACAGU	AK170753|Sell|20343|selectin, lymphocyte	NM_001164059|Sell|20343|selectin, lymphocyte	NM_011346|Sell|20343|selectin, lymphocyte	AK161754|Sell|20343|selectin, lymphocyte	AK157273|Sell|20343|selectin, lymphocyte	AK172116|Sell|20343|selectin, lymphocyte	BC052681|Sell|20343|selectin, lymphocyte	M25324|Sell|20343|selectin, lymphocyte	X14772|Sell|20343|selectin, lymphocyte	M36005|Sell|20343|selectin, lymphocyte	M36058|Sell|20343|selectin, lymphocyte	AK137509|Sell|20343|selectin, lymphocyte
