mm9_v1_chr7_-_111001598_111001720	34.0653	FOXA2.p3	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr1_-_42749940_42749978	19.6538	FOXA2.p3	BC059892|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	BC058417|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr18_+_20823908_20823925	17.5968	FOXA2.p3	AK018701|Ttr|22139|transthyretin	AK014454|Ttr|22139|transthyretin	AK075588|Ttr|22139|transthyretin	BC086926|Ttr|22139|transthyretin	D89076|Ttr|22139|transthyretin	X03351|Ttr|22139|transthyretin	AK050155|Ttr|22139|transthyretin	BC032069|Ttr|22139|transthyretin
mm9_v1_chr16_+_22892112_22892117	9.61168	FOXA2.p3	NM_013465|Ahsg|11625|alpha-2-HS-glycoprotein	AK149474|Ahsg|11625|alpha-2-HS-glycoprotein	AK149479|Ahsg|11625|alpha-2-HS-glycoprotein	AK167709|Ahsg|11625|alpha-2-HS-glycoprotein	AK133523|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr14_+_73637697_73637874	8.57718	FOXA2.p3	NM_175116|Lpar6|67168|lysophosphatidic acid receptor 6	AK032901|Lpar6|67168|lysophosphatidic acid receptor 6	AK011967|Lpar6|67168|lysophosphatidic acid receptor 6	AK169602|Lpar6|67168|lysophosphatidic acid receptor 6	BC047931|Lpar6|67168|lysophosphatidic acid receptor 6	AK008952|Lpar6|67168|lysophosphatidic acid receptor 6	BC057175|Lpar6|67168|lysophosphatidic acid receptor 6	BC069991|Lpar6|67168|lysophosphatidic acid receptor 6
mm9_v1_chr12_+_7984451_7984482	7.75006	FOXA2.p3	BC100607|Apob|238055|apolipoprotein B	BC028880|Apob|238055|apolipoprotein B	BC038263|Apob|238055|apolipoprotein B	NM_009693|Apob|238055|apolipoprotein B
mm9_v1_chr7_-_112748624_112748633	7.53906	FOXA2.p3	AK145928|Hpx|15458|hemopexin	NM_017371|Hpx|15458|hemopexin
mm9_v1_chr3_-_95708543_95708565	7.49694	FOXA2.p3	BC046995|Car14|23831|carbonic anhydrase 14	AK157764|Car14|23831|carbonic anhydrase 14	AB005450|Car14|23831|carbonic anhydrase 14	NM_011797|Car14|23831|carbonic anhydrase 14
mm9_v1_chr15_-_96861590_96861647	7.48886	FOXA2.p3	BC024072|Slc38a4|69354|solute carrier family 38, member 4	BC024123|Slc38a4|69354|solute carrier family 38, member 4	AB055004|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr7_+_147949708_147949754	6.65811	FOXA2.p3	BC013451|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	NM_021282|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	DQ838976|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	DQ838977|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	X62595|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1	BC042693|Cyp2e1|13106|cytochrome P450, family 2, subfamily e, polypeptide 1
mm9_v1_chr1_+_67169588_67169639	6.10033	FOXA2.p3	BC126969|Cps1|227231|carbamoyl-phosphate synthetase 1	NM_001080809|Cps1|227231|carbamoyl-phosphate synthetase 1
mm9_v1_chr11_+_108256590_108256640	6.04419	FOXA2.p3	Y11356|Apoh|11818|apolipoprotein H	NM_013475|Apoh|11818|apolipoprotein H	BC011037|Apoh|11818|apolipoprotein H	BC019811|Apoh|11818|apolipoprotein H	AK010926|Apoh|11818|apolipoprotein H	S70439|Apoh|11818|apolipoprotein H	BC053338|Apoh|11818|apolipoprotein H	D10056|Apoh|11818|apolipoprotein H
mm9_v1_chr11_+_32176599_32176641	5.94692	FOXA2.p3	NM_010405|Hba-x|15126|hemoglobin X, alpha-like embryonic chain in Hba complex	AK077590|Hba-x|15126|hemoglobin X, alpha-like embryonic chain in Hba complex	BC051988|Hba-x|15126|hemoglobin X, alpha-like embryonic chain in Hba complex	M26898|Hba-x|15126|hemoglobin X, alpha-like embryonic chain in Hba complex
mm9_v1_chr2_+_44966657_44966746	5.90191	FOXA2.p3	BC031611|Gm13476|433424|predicted gene 13476	NM_001177394|Gm13476|433424|predicted gene 13476
mm9_v1_chrX_+_109424956_109425024	5.88732	FOXA2.p3	AK028953|Apool|68117|apolipoprotein O-like	AK079141|Apool|68117|apolipoprotein O-like	AK012398|Apool|68117|apolipoprotein O-like	AK012804|Apool|68117|apolipoprotein O-like	AK020156|Apool|68117|apolipoprotein O-like	AK088869|Apool|68117|apolipoprotein O-like	AK086522|Apool|68117|apolipoprotein O-like	BC024334|Apool|68117|apolipoprotein O-like	NM_026565|Apool|68117|apolipoprotein O-like
mm9_v1_chr5_-_146691425_146691448	5.77787	FOXA2.p3	BC094062|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	X60452|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	BC010528|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	NM_007818|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	AK149433|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11
mm9_v1_chr4_+_104438905_104438999	5.75362	FOXA2.p3	AK050313|C8b|110382|complement component 8, beta polypeptide	NM_133882|C8b|110382|complement component 8, beta polypeptide	BC096382|C8b|110382|complement component 8, beta polypeptide	AB077304|C8b|110382|complement component 8, beta polypeptide	AB077305|C8b|110382|complement component 8, beta polypeptide	AB077306|C8b|110382|complement component 8, beta polypeptide
mm9_v1_chr19_-_58529766_58529841	5.67958	FOXA2.p3	BC044783|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1	AK076171|Gfra1|14585|glial cell line derived neurotrophic factor family receptor alpha 1
mm9_v1_chr17_+_12571494_12571524	5.34447	FOXA2.p3	BC057186|Plg|18815|plasminogen	AK132254|Plg|18815|plasminogen	J04766|Plg|18815|plasminogen	AK040840|Plg|18815|plasminogen
mm9_v1_chr1_+_72353980_72354076	5.05887	FOXA2.p3	AK081633|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	NM_009533|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK089944|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK165470|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK084263|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	BC051660|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5
mm9_v1_chr19_-_34329804_34329828	4.81785	FOXA2.p3	X13297|Acta2|11475|actin, alpha 2, smooth muscle, aorta	BC064800|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK017374|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK156331|Acta2|11475|actin, alpha 2, smooth muscle, aorta	NM_007392|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr17_+_12571455_12571482	4.79085	FOXA2.p3	BC014773|Plg|18815|plasminogen	NM_008877|Plg|18815|plasminogen
mm9_v1_chr3_+_5218545_5218658	4.70506	FOXA2.p3	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr18_-_60661144_60661295	4.45846	FOXA2.p3	BC012898|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene	AF313412|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene	AK171923|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene	AK170783|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene	AK155873|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene	AK171810|2010002N04Rik|106878|RIKEN cDNA 2010002N04 gene
mm9_v1_chr3_-_27052733_27052775	4.45844	FOXA2.p3	AK040174|Ect2|13605|ect2 oncogene	BC045614|Ect2|13605|ect2 oncogene	BC025565|Ect2|13605|ect2 oncogene	BC032155|Ect2|13605|ect2 oncogene	BC023881|Ect2|13605|ect2 oncogene	AK157718|Ect2|13605|ect2 oncogene	L11316|Ect2|13605|ect2 oncogene	AK220452|Ect2|13605|ect2 oncogene	NM_001177625|Ect2|13605|ect2 oncogene	NM_007900|Ect2|13605|ect2 oncogene
mm9_v1_chr10_-_86956393_86956406	4.39912	FOXA2.p3	AK141866|Ascl1|17172|achaete-scute complex homolog 1 (Drosophila)	AK143210|Ascl1|17172|achaete-scute complex homolog 1 (Drosophila)	NM_008553|Ascl1|17172|achaete-scute complex homolog 1 (Drosophila)
mm9_v1_chr2_+_167363696_167363726	4.33605	FOXA2.p3	AK144478|Snai1|20613|snail homolog 1 (Drosophila)	BC034857|Snai1|20613|snail homolog 1 (Drosophila)	NM_011427|Snai1|20613|snail homolog 1 (Drosophila)
mm9_v1_chr5_-_103640272_103640352	4.29173	FOXA2.p3	AK036275|Mapk10|26414|mitogen-activated protein kinase 10	BC046625|Mapk10|26414|mitogen-activated protein kinase 10	AK163206|Mapk10|26414|mitogen-activated protein kinase 10	AK076990|Mapk10|26414|mitogen-activated protein kinase 10	BC026697|Mapk10|26414|mitogen-activated protein kinase 10	AK082242|Mapk10|26414|mitogen-activated protein kinase 10	NM_001081567|Mapk10|26414|mitogen-activated protein kinase 10	NM_009158|Mapk10|26414|mitogen-activated protein kinase 10
mm9_v1_chr19_+_5041341_5041422	4.15108	FOXA2.p3	AF233580|Brms1|107392|breast cancer metastasis-suppressor 1	AK076729|Brms1|107392|breast cancer metastasis-suppressor 1	BC016108|Brms1|107392|breast cancer metastasis-suppressor 1	NM_134155|Brms1|107392|breast cancer metastasis-suppressor 1	BC003485|Brms1|107392|breast cancer metastasis-suppressor 1
mm9_v1_chrX_+_93651684_93651766	3.99403	FOXA2.p3	NM_001159627|Heph|15203|hephaestin	NM_181273|Heph|15203|hephaestin	AK081330|Heph|15203|hephaestin	AK129194|Heph|15203|hephaestin	AK032895|Heph|15203|hephaestin	AK086923|Heph|15203|hephaestin
mm9_v1_chr4_-_49562319_49562386	3.93569	FOXA2.p3	BC026577|Aldob|230163|aldolase B, fructose-bisphosphate	BC034172|Aldob|230163|aldolase B, fructose-bisphosphate	BC034173|Aldob|230163|aldolase B, fructose-bisphosphate	BC022113|Aldob|230163|aldolase B, fructose-bisphosphate	BC034171|Aldob|230163|aldolase B, fructose-bisphosphate	BC036130|Aldob|230163|aldolase B, fructose-bisphosphate	BC016435|Aldob|230163|aldolase B, fructose-bisphosphate	BC036131|Aldob|230163|aldolase B, fructose-bisphosphate	BC036132|Aldob|230163|aldolase B, fructose-bisphosphate	BC036133|Aldob|230163|aldolase B, fructose-bisphosphate	NM_144903|Aldob|230163|aldolase B, fructose-bisphosphate	BC030724|Aldob|230163|aldolase B, fructose-bisphosphate	BC024112|Aldob|230163|aldolase B, fructose-bisphosphate	BC024056|Aldob|230163|aldolase B, fructose-bisphosphate	BC030725|Aldob|230163|aldolase B, fructose-bisphosphate	BC034169|Aldob|230163|aldolase B, fructose-bisphosphate	AK149598|Aldob|230163|aldolase B, fructose-bisphosphate	AK167566|Aldob|230163|aldolase B, fructose-bisphosphate	AK168600|Aldob|230163|aldolase B, fructose-bisphosphate	AK149395|Aldob|230163|aldolase B, fructose-bisphosphate	AK167334|Aldob|230163|aldolase B, fructose-bisphosphate	AK135385|Aldob|230163|aldolase B, fructose-bisphosphate
mm9_v1_chr6_+_5340417_5340708	3.8013	FOXA2.p3	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr6_-_87793459_87793650	3.75685	FOXA2.p3	AK211658|Cnbp|12785|cellular nucleic acid binding protein	BC003805|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr2_-_70663453_70663686	3.73805	FOXA2.p3	BC057369|Tlk1|228012|tousled-like kinase 1	BC051641|Tlk1|228012|tousled-like kinase 1	NM_172664|Tlk1|228012|tousled-like kinase 1
mm9_v1_chr7_-_77511242_77511282	3.72441	FOXA2.p3	AK012573|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2	AK012322|Nr2f2|11819|nuclear receptor subfamily 2, group F, member 2
mm9_v1_chr15_-_99481964_99482097	3.66106	FOXA2.p3	AK162660|Racgap1|26934|Rac GTPase-activating protein 1	AK168679|Racgap1|26934|Rac GTPase-activating protein 1	AF079974|Racgap1|26934|Rac GTPase-activating protein 1	BC010715|Racgap1|26934|Rac GTPase-activating protein 1	AK144745|Racgap1|26934|Rac GTPase-activating protein 1	AK165897|Racgap1|26934|Rac GTPase-activating protein 1	AK166084|Racgap1|26934|Rac GTPase-activating protein 1	AK166094|Racgap1|26934|Rac GTPase-activating protein 1	AK168020|Racgap1|26934|Rac GTPase-activating protein 1	AK168025|Racgap1|26934|Rac GTPase-activating protein 1	AK168170|Racgap1|26934|Rac GTPase-activating protein 1	AK053850|Racgap1|26934|Rac GTPase-activating protein 1	AF212320|Racgap1|26934|Rac GTPase-activating protein 1	AF212321|Racgap1|26934|Rac GTPase-activating protein 1	NM_012025|Racgap1|26934|Rac GTPase-activating protein 1	AK144608|Racgap1|26934|Rac GTPase-activating protein 1	AB030252|Racgap1|26934|Rac GTPase-activating protein 1	AK154929|Racgap1|26934|Rac GTPase-activating protein 1
mm9_v1_chr3_-_81779636_81779675	3.48615	FOXA2.p3	U24493|Tdo2|56720|tryptophan 2,3-dioxygenase	BC018390|Tdo2|56720|tryptophan 2,3-dioxygenase	NM_019911|Tdo2|56720|tryptophan 2,3-dioxygenase	AK132271|Tdo2|56720|tryptophan 2,3-dioxygenase
mm9_v1_chr4_+_11118855_11118930	3.44666	FOXA2.p3	NM_009830|Ccne2|12448|cyclin E2	AK010929|Ccne2|12448|cyclin E2	AK031116|Ccne2|12448|cyclin E2	AK037791|Ccne2|12448|cyclin E2	AK167428|Ccne2|12448|cyclin E2
mm9_v1_chr6_-_51416921_51416984	3.40112	FOXA2.p3	BC059107|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr3_-_95708606_95708607	3.38956	FOXA2.p3	AK009805|Car14|23831|carbonic anhydrase 14
mm9_v1_chr7_-_139508857_139508903	3.37373	FOXA2.p3	AK082318|Chst15|77590|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
mm9_v1_chr2_-_126959605_126959689	3.28769	FOXA2.p3	AK042706|Ncaph|215387|non-SMC condensin I complex, subunit H	BC025060|Ncaph|215387|non-SMC condensin I complex, subunit H	BC021499|Ncaph|215387|non-SMC condensin I complex, subunit H	AK028919|Ncaph|215387|non-SMC condensin I complex, subunit H	AK080433|Ncaph|215387|non-SMC condensin I complex, subunit H	NM_144818|Ncaph|215387|non-SMC condensin I complex, subunit H
mm9_v1_chr12_-_101121613_101121712	3.20355	FOXA2.p3	BC049109|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK035051|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK011836|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK011507|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	NM_030172|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene	AK132473|2610021K21Rik|78767|RIKEN cDNA 2610021K21 gene
mm9_v1_chr9_+_109735261_109735329	3.15948	FOXA2.p3	AK004201|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	AF051942|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	BC002007|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)	NM_018757|Nme6|54369|non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr3_-_145312928_145312948	3.08962	FOXA2.p3	BC066019|Cyr61|16007|cysteine rich protein 61	BC003205|Cyr61|16007|cysteine rich protein 61	AK156723|Cyr61|16007|cysteine rich protein 61	AK159452|Cyr61|16007|cysteine rich protein 61	M32490|Cyr61|16007|cysteine rich protein 61	NM_010516|Cyr61|16007|cysteine rich protein 61
mm9_v1_chr6_-_65094691_65094750	3.06758	FOXA2.p3	BC116735|Hpgds|54486|hematopoietic prostaglandin D synthase	BC116737|Hpgds|54486|hematopoietic prostaglandin D synthase	AK020246|Hpgds|54486|hematopoietic prostaglandin D synthase	AK039392|Hpgds|54486|hematopoietic prostaglandin D synthase	NM_019455|Hpgds|54486|hematopoietic prostaglandin D synthase
mm9_v1_chr6_-_127089169_127089223	3.04736	FOXA2.p3	AK182883|Ccnd2|12444|cyclin D2
mm9_v1_chr4_-_6202747_6202782	2.96972	FOXA2.p3	BC130261|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050020|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050220|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050260|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	NM_007824|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1	AK050210|Cyp7a1|13122|cytochrome P450, family 7, subfamily a, polypeptide 1
mm9_v1_chr10_-_24647243_24647289	2.86033	FOXA2.p3	BC013341|Arg1|11846|arginase, liver	AK149471|Arg1|11846|arginase, liver	NM_007482|Arg1|11846|arginase, liver	BC050005|Arg1|11846|arginase, liver
mm9_v1_chr6_+_34659440_34659540	2.83743	FOXA2.p3	NM_145575|Cald1|109624|caldesmon 1	BC019435|Cald1|109624|caldesmon 1	AK014755|Cald1|109624|caldesmon 1	AK160593|Cald1|109624|caldesmon 1
mm9_v1_chr8_+_3567980_3567997	2.72158	FOXA2.p3	AK168456|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	AK011562|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	AK049309|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene	NM_001024728|C330021F23Rik|546049|RIKEN cDNA C330021F23 gene
mm9_v1_chr2_-_66622823_66622970	2.69261	FOXA2.p3	BC145273|Scn7a|20272|sodium channel, voltage-gated, type VII, alpha	NM_009135|Scn7a|20272|sodium channel, voltage-gated, type VII, alpha	AK142964|Scn7a|20272|sodium channel, voltage-gated, type VII, alpha
mm9_v1_chr12_-_105195097_105195135	2.68675	FOXA2.p3	M75717|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	BC061176|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	NM_009247|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	AK004999|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	AK135650|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E
mm9_v1_chr3_-_82853711_82853734	2.61098	FOXA2.p3	BC031715|Fgb|110135|fibrinogen beta chain	NM_181849|Fgb|110135|fibrinogen beta chain	AK168626|Fgb|110135|fibrinogen beta chain	AK011920|Fgb|110135|fibrinogen beta chain	AK011118|Fgb|110135|fibrinogen beta chain	AK146960|Fgb|110135|fibrinogen beta chain
mm9_v1_chr10_-_117252126_117252166	2.58119	FOXA2.p3	
mm9_v1_chr12_-_82068951_82069043	2.56157	FOXA2.p3	U95131|Slc10a1|20493|solute carrier family 10 (sodium/bile acid cotransporter family), member 1	U95132|Slc10a1|20493|solute carrier family 10 (sodium/bile acid cotransporter family), member 1	AB003303|Slc10a1|20493|solute carrier family 10 (sodium/bile acid cotransporter family), member 1	BC021154|Slc10a1|20493|solute carrier family 10 (sodium/bile acid cotransporter family), member 1
mm9_v1_chrX_+_104115963_104116162	2.46623	FOXA2.p3	NM_175271|Lpar4|78134|lysophosphatidic acid receptor 4	BC052178|Lpar4|78134|lysophosphatidic acid receptor 4	AK051709|Lpar4|78134|lysophosphatidic acid receptor 4	AK019967|Lpar4|78134|lysophosphatidic acid receptor 4	AK045289|Lpar4|78134|lysophosphatidic acid receptor 4	BC069178|Lpar4|78134|lysophosphatidic acid receptor 4	BC138893|Lpar4|78134|lysophosphatidic acid receptor 4	BC138894|Lpar4|78134|lysophosphatidic acid receptor 4
mm9_v1_chr10_+_127705664_127705801	2.42124	FOXA2.p3	BC022795|Apof|103161|apolipoprotein F	BC024769|Apof|103161|apolipoprotein F	BC025827|Apof|103161|apolipoprotein F	BC010815|Apof|103161|apolipoprotein F
mm9_v1_chr16_+_17331507_17331521	2.34972	FOXA2.p3	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr4_-_55545337_55545348	2.29022	FOXA2.p3	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chrX_-_91368427_91368500	2.2659	FOXA2.p3	BC028506|Zfx|22764|zinc finger protein X-linked	M32308|Zfx|22764|zinc finger protein X-linked
mm9_v1_chr15_-_84686558_84686558	2.26047	FOXA2.p3	AK046530|Phf21b|271305|PHD finger protein 21B	NM_001081166|Phf21b|271305|PHD finger protein 21B
mm9_v1_chr4_+_140257340_140257464	2.2427	FOXA2.p3	NM_173867|Rcc2|108911|regulator of chromosome condensation 2	BC060624|Rcc2|108911|regulator of chromosome condensation 2	AK076040|Rcc2|108911|regulator of chromosome condensation 2	BC086666|Rcc2|108911|regulator of chromosome condensation 2
mm9_v1_chr1_-_180259336_180259529	2.23422	FOXA2.p3	AK049375|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK080656|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr2_-_92232506_92232632	2.2324	FOXA2.p3	AF109769|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109770|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109771|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr7_-_112748585_112748623	2.19222	FOXA2.p3	U89889|Hpx|15458|hemopexin	BC011246|Hpx|15458|hemopexin	BC019901|Hpx|15458|hemopexin
mm9_v1_chr8_-_112102961_112102972	2.18537	FOXA2.p3	AK159676|Hp|15439|haptoglobin	S67972|Hp|15439|haptoglobin	AK150430|Hp|15439|haptoglobin	AK150830|Hp|15439|haptoglobin	AK152295|Hp|15439|haptoglobin	AK152698|Hp|15439|haptoglobin
mm9_v1_chr9_-_107612238_107612349	2.18388	FOXA2.p3	AK140340|Sema3f|20350|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm9_v1_chr1_-_163181251_163181302	2.18058	FOXA2.p3	BC013489|Prdx6|11758|peroxiredoxin 6	AK172888|Prdx6|11758|peroxiredoxin 6	AF004670|Prdx6|11758|peroxiredoxin 6	AK168223|Prdx6|11758|peroxiredoxin 6	AK076191|Prdx6|11758|peroxiredoxin 6	AK035097|Prdx6|11758|peroxiredoxin 6	AK081980|Prdx6|11758|peroxiredoxin 6	AF093852|Prdx6|11758|peroxiredoxin 6	AK030413|Prdx6|11758|peroxiredoxin 6	AK161710|Prdx6|11758|peroxiredoxin 6	BC061181|Prdx6|11758|peroxiredoxin 6	NM_007453|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr7_+_120909625_120909653	2.14383	FOXA2.p3	BC020531|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr13_-_22127419_22127511	2.12584	FOXA2.p3	BC125248|Hist1h2ah|319168|histone cluster 1, H2ah	NM_175659|Hist1h2ah|319168|histone cluster 1, H2ah	BC139479|Hist1h2ah|319168|histone cluster 1, H2ah	BC146008|Hist1h2ah|319168|histone cluster 1, H2ah
mm9_v1_chr10_-_60915251_60915468	2.1048	FOXA2.p3	AK133912|Eif4ebp2|13688|eukaryotic translation initiation factor 4E binding protein 2	BC119539|Eif4ebp2|13688|eukaryotic translation initiation factor 4E binding protein 2	NM_010124|Eif4ebp2|13688|eukaryotic translation initiation factor 4E binding protein 2	U75530|Eif4ebp2|13688|eukaryotic translation initiation factor 4E binding protein 2
mm9_v1_chr4_-_87452140_87452217	2.10036	FOXA2.p3	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr19_-_10630215_10630267	2.06973	FOXA2.p3	BC052053|Tmem216|68642|transmembrane protein 216	AK080725|Tmem216|68642|transmembrane protein 216	AK013286|Tmem216|68642|transmembrane protein 216
mm9_v1_chr8_+_120225803_120225850	2.00315	FOXA2.p3	Y09517|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2	AK004950|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2	NM_008290|Hsd17b2|15486|hydroxysteroid (17-beta) dehydrogenase 2
mm9_v1_chr4_-_82698070_82698070	2.00252	FOXA2.p3	AB160986|Frem1|329872|Fras1 related extracellular matrix protein 1	NM_001198811|Frem1|329872|Fras1 related extracellular matrix protein 1
mm9_v1_chr16_+_17331463_17331501	1.97286	FOXA2.p3	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr10_+_66648458_66648510	1.94536	FOXA2.p3	AK087621|Jmjd1c|108829|jumonji domain containing 1C	AK170460|Jmjd1c|108829|jumonji domain containing 1C	AK135461|Jmjd1c|108829|jumonji domain containing 1C	AK085500|Jmjd1c|108829|jumonji domain containing 1C	AK133016|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr12_+_53198729_53198769	1.93055	FOXA2.p3	NM_029760|Nubpl|76826|nucleotide binding protein-like	AK152377|Nubpl|76826|nucleotide binding protein-like	AK083643|Nubpl|76826|nucleotide binding protein-like	BC062175|Nubpl|76826|nucleotide binding protein-like	AK010827|Nubpl|76826|nucleotide binding protein-like	AK141257|Nubpl|76826|nucleotide binding protein-like
mm9_v1_chr6_-_3444484_3444497	1.92226	FOXA2.p3	BC096374|Hepacam2|101202|HEPACAM family member 2	AK033728|Hepacam2|101202|HEPACAM family member 2	AK050501|Hepacam2|101202|HEPACAM family member 2	NM_178899|Hepacam2|101202|HEPACAM family member 2
mm9_v1_chr12_+_77471506_77471590	1.85826	FOXA2.p3	AK029762|Zbtb1|268564|zinc finger and BTB domain containing 1	AK131985|Zbtb1|268564|zinc finger and BTB domain containing 1	BC012239|Zbtb1|268564|zinc finger and BTB domain containing 1
mm9_v1_chr3_-_115832327_115832378	1.84352	FOXA2.p3	U12884|Vcam1|22329|vascular cell adhesion molecule 1	M84487|Vcam1|22329|vascular cell adhesion molecule 1	L08431|Vcam1|22329|vascular cell adhesion molecule 1	BC011159|Vcam1|22329|vascular cell adhesion molecule 1	AK016465|Vcam1|22329|vascular cell adhesion molecule 1	AK030195|Vcam1|22329|vascular cell adhesion molecule 1	AK143401|Vcam1|22329|vascular cell adhesion molecule 1	AK162954|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr4_-_129317873_129317883	1.82068	FOXA2.p3	BC060227|Txlna|109658|taxilin alpha	BC065115|Txlna|109658|taxilin alpha	NM_001005506|Txlna|109658|taxilin alpha
mm9_v1_chrX_+_146981959_146981987	1.81047	FOXA2.p3	NM_001102446|Alas2|11656|aminolevulinic acid synthase 2, erythroid	NM_009653|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK077610|Alas2|11656|aminolevulinic acid synthase 2, erythroid
mm9_v1_chr15_-_97835044_97835154	1.80984	FOXA2.p3	BC052326|Col2a1|12824|collagen, type II, alpha 1	BC051383|Col2a1|12824|collagen, type II, alpha 1	AK132311|Col2a1|12824|collagen, type II, alpha 1	BC082331|Col2a1|12824|collagen, type II, alpha 1	AK053784|Col2a1|12824|collagen, type II, alpha 1	NM_001113515|Col2a1|12824|collagen, type II, alpha 1	NM_031163|Col2a1|12824|collagen, type II, alpha 1
mm9_v1_chr19_+_30105077_30105267	1.80121	FOXA2.p3	AK172682|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AF274047|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AB116653|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2
mm9_v1_chr15_+_80453912_80453951	1.79394	FOXA2.p3	AF055465|Grap2|17444|GRB2-related adaptor protein 2	NM_010815|Grap2|17444|GRB2-related adaptor protein 2	AK156939|Grap2|17444|GRB2-related adaptor protein 2	AJ011735|Grap2|17444|GRB2-related adaptor protein 2	AF129477|Grap2|17444|GRB2-related adaptor protein 2	AF236118|Grap2|17444|GRB2-related adaptor protein 2
mm9_v1_chr17_+_47641999_47642189	1.78886	FOXA2.p3	NM_001081635|Ccnd3|12445|cyclin D3	NM_001081636|Ccnd3|12445|cyclin D3	AK161758|Ccnd3|12445|cyclin D3	AK083384|Ccnd3|12445|cyclin D3	AK020317|Ccnd3|12445|cyclin D3
mm9_v1_chr5_-_87335956_87335985	1.78401	FOXA2.p3	BC028826|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	NM_153598|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34	AK145951|Ugt2b34|100727|UDP glucuronosyltransferase 2 family, polypeptide B34
mm9_v1_chrX_-_46641408_46641425	1.77457	FOXA2.p3	AK028343|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK034058|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK041822|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	NM_145951|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2
mm9_v1_chr7_+_148645664_148645872	1.75892	FOXA2.p3	BC026807|Pnpla2|66853|patatin-like phospholipase domain containing 2
mm9_v1_chr10_+_127691166_127691233	1.75692	FOXA2.p3	NM_133996|Apon|28194|apolipoprotein N	AK083289|Apon|28194|apolipoprotein N
mm9_v1_chr16_-_84735425_84735537	1.74502	FOXA2.p3	BC012274|Mrpl39|27393|mitochondrial ribosomal protein L39	NM_017404|Mrpl39|27393|mitochondrial ribosomal protein L39	AF239728|Mrpl39|27393|mitochondrial ribosomal protein L39	AK031942|Mrpl39|27393|mitochondrial ribosomal protein L39	BC016561|Mrpl39|27393|mitochondrial ribosomal protein L39	BC036276|Mrpl39|27393|mitochondrial ribosomal protein L39	AK007681|Mrpl39|27393|mitochondrial ribosomal protein L39
mm9_v1_chr4_+_154929136_154929270	1.73041	FOXA2.p3	AK218112|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK190349|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK191980|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK199789|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK200062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr15_+_25682945_25682960	1.72168	FOXA2.p3	AK161653|Myo10|17909|myosin X
mm9_v1_chr12_-_58646914_58647013	1.72158	FOXA2.p3	X74936|Foxa1|15375|forkhead box A1	U44752|Foxa1|15375|forkhead box A1
mm9_v1_chr3_+_146260100_146260160	1.70069	FOXA2.p3	AK050425|Uox|22262|urate oxidase	NM_009474|Uox|22262|urate oxidase	BC019771|Uox|22262|urate oxidase	M27695|Uox|22262|urate oxidase
mm9_v1_chr9_+_78463569_78463695	1.67911	FOXA2.p3	AK076475|Cd109|235505|CD109 antigen	AK029247|Cd109|235505|CD109 antigen	BC052443|Cd109|235505|CD109 antigen	AK036799|Cd109|235505|CD109 antigen
mm9_v1_chr6_+_142246944_142246973	1.66454	FOXA2.p3	NM_010491|Iapp|15874|islet amyloid polypeptide	BC027527|Iapp|15874|islet amyloid polypeptide
mm9_v1_chr18_+_77365613_77365672	1.66072	FOXA2.p3	AK078097|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr19_+_55816320_55816547	1.64532	FOXA2.p3	AK132465|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	AK035059|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	AF107298|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chr8_-_125222837_125223008	1.62725	FOXA2.p3	BC141396|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	BC151156|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AF038029|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_009824|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr13_+_49678115_49678143	1.61871	FOXA2.p3	AB007848|Omd|27047|osteomodulin	NM_012050|Omd|27047|osteomodulin	BC095997|Omd|27047|osteomodulin
mm9_v1_chr14_-_118450875_118451546	1.60062	FOXA2.p3	EU554632|Dct|13190|dopachrome tautomerase	AK214181|Dct|13190|dopachrome tautomerase	AK214448|Dct|13190|dopachrome tautomerase	AK217087|Dct|13190|dopachrome tautomerase	AK212164|Dct|13190|dopachrome tautomerase	AK219002|Dct|13190|dopachrome tautomerase	BC082330|Dct|13190|dopachrome tautomerase	AK209892|Dct|13190|dopachrome tautomerase	AK191654|Dct|13190|dopachrome tautomerase	BC067064|Dct|13190|dopachrome tautomerase	X63349|Dct|13190|dopachrome tautomerase	AK033040|Dct|13190|dopachrome tautomerase	NM_010024|Dct|13190|dopachrome tautomerase	AK202452|Dct|13190|dopachrome tautomerase
mm9_v1_chr1_-_157882999_157883288	1.5959	FOXA2.p3	AK152751|Tor1aip1|208263|torsin A interacting protein 1	AK139709|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr1_-_134264461_134264465	1.58909	FOXA2.p3	AK145948|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172313|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172382|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK158436|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK165309|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK171635|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172356|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172541|Tmcc2|68875|transmembrane and coiled-coil domains 2	AK172720|Tmcc2|68875|transmembrane and coiled-coil domains 2
mm9_v1_chr12_+_60114357_60114456	1.58209	FOXA2.p3	AK005928|Sip1|66603|survival of motor neuron protein interacting protein 1	AK007515|Sip1|66603|survival of motor neuron protein interacting protein 1	NM_025656|Sip1|66603|survival of motor neuron protein interacting protein 1	AK013414|Sip1|66603|survival of motor neuron protein interacting protein 1	BC053424|Sip1|66603|survival of motor neuron protein interacting protein 1
mm9_v1_chr9_-_14588941_14589004	1.58152	FOXA2.p3	AK155932|Ankrd49|56503|ankyrin repeat domain 49	AK137504|Ankrd49|56503|ankyrin repeat domain 49	AK153923|Ankrd49|56503|ankyrin repeat domain 49	AK157315|Ankrd49|56503|ankyrin repeat domain 49	AK132850|Ankrd49|56503|ankyrin repeat domain 49	AF028722|Ankrd49|56503|ankyrin repeat domain 49
mm9_v1_chr16_+_22951183_22951214	1.54167	FOXA2.p3	AY135662|Hrg|94175|histidine-rich glycoprotein	AB055897|Hrg|94175|histidine-rich glycoprotein	BC011168|Hrg|94175|histidine-rich glycoprotein	AF194028|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr1_-_174128558_174128619	1.52818	FOXA2.p3	BC092079|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr18_+_37880036_37880207	1.52293	FOXA2.p3	AK083581|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	BC138701|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	AY013806|Pcdhgb4|93701|protocadherin gamma subfamily B, 4	NM_033576|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr6_-_119338677_119338775	1.51611	FOXA2.p3	AK148295|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr10_-_20880559_20880789	1.50634	FOXA2.p3	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr6_-_5143755_5143945	1.49661	FOXA2.p3	BC012706|Pon1|18979|paraoxonase 1	U72636|Pon1|18979|paraoxonase 1	U32684|Pon1|18979|paraoxonase 1	NM_011134|Pon1|18979|paraoxonase 1
mm9_v1_chr13_-_47201478_47201615	1.49507	FOXA2.p3	AK033451|Dek|110052|DEK oncogene (DNA binding)	AK012877|Dek|110052|DEK oncogene (DNA binding)	AK012615|Dek|110052|DEK oncogene (DNA binding)	BC055451|Dek|110052|DEK oncogene (DNA binding)	BC048844|Dek|110052|DEK oncogene (DNA binding)	AK012315|Dek|110052|DEK oncogene (DNA binding)	AK154013|Dek|110052|DEK oncogene (DNA binding)	NM_025900|Dek|110052|DEK oncogene (DNA binding)
mm9_v1_chr19_+_30104914_30105033	1.49224	FOXA2.p3	AK082518|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK031036|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK042321|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK051743|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK080925|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK041564|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	BC060241|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	NM_144873|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2
mm9_v1_chr11_-_77707282_77707373	1.48595	FOXA2.p3	U94700|Pipox|19193|pipecolic acid oxidase	BC013525|Pipox|19193|pipecolic acid oxidase	AK135009|Pipox|19193|pipecolic acid oxidase	AK149488|Pipox|19193|pipecolic acid oxidase	AK008555|Pipox|19193|pipecolic acid oxidase	NM_008952|Pipox|19193|pipecolic acid oxidase
mm9_v1_chr11_-_97023157_97023169	1.4859	FOXA2.p3	BC004096|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr11_-_40508405_40508442	1.48367	FOXA2.p3	AK075600|Mat2b|108645|methionine adenosyltransferase II, beta	AK075947|Mat2b|108645|methionine adenosyltransferase II, beta	AK162087|Mat2b|108645|methionine adenosyltransferase II, beta
mm9_v1_chr1_-_163181313_163181346	1.4798	FOXA2.p3	AK157820|Prdx6|11758|peroxiredoxin 6	Y12883|Prdx6|11758|peroxiredoxin 6
mm9_v1_chr19_+_45225176_45225204	1.45853	FOXA2.p3	BC018246|Tlx1|21908|T-cell leukemia, homeobox 1	NM_021901|Tlx1|21908|T-cell leukemia, homeobox 1
mm9_v1_chr4_-_21694265_21694282	1.45216	FOXA2.p3	AK011611|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr8_-_48799252_48799297	1.44047	FOXA2.p3	AK048437|Cdkn2aip|70925|CDKN2A interacting protein	AK078329|Cdkn2aip|70925|CDKN2A interacting protein	AK167684|Cdkn2aip|70925|CDKN2A interacting protein	AK133831|Cdkn2aip|70925|CDKN2A interacting protein	NM_172407|Cdkn2aip|70925|CDKN2A interacting protein	AK035426|Cdkn2aip|70925|CDKN2A interacting protein	AK089057|Cdkn2aip|70925|CDKN2A interacting protein
mm9_v1_chr7_+_148662315_148662353	1.42945	FOXA2.p3	BC003482|Tspan4|64540|tetraspanin 4
mm9_v1_chr10_+_110943412_110943638	1.42503	FOXA2.p3	AK158890|Phlda1|21664|pleckstrin homology-like domain, family A, member 1	AK148063|Phlda1|21664|pleckstrin homology-like domain, family A, member 1
mm9_v1_chr2_+_69560861_69560899	1.42381	FOXA2.p3	BC016126|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC048905|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr1_+_194681115_194681125	1.41693	FOXA2.p3	
mm9_v1_chr16_+_20611637_20611755	1.40076	FOXA2.p3	AK007407|Ece2|107522|endothelin converting enzyme 2	AK007791|Ece2|107522|endothelin converting enzyme 2	BC115541|Ece2|107522|endothelin converting enzyme 2	BC115542|Ece2|107522|endothelin converting enzyme 2	NM_025462|Ece2|107522|endothelin converting enzyme 2	NM_177940|Ece2|107522|endothelin converting enzyme 2	NM_177941|Ece2|107522|endothelin converting enzyme 2
mm9_v1_chr10_+_97110043_97110069	1.38915	FOXA2.p3	AK137179|Epyc|13516|epiphycan	D78274|Epyc|13516|epiphycan
mm9_v1_chr7_-_29678773_29678890	1.36418	FOXA2.p3	AK195007|Actn4|60595|actinin alpha 4
mm9_v1_chr11_+_69812965_69813148	1.33075	FOXA2.p3	Y17676|Phf23|78246|PHD finger protein 23
mm9_v1_chr7_-_148629877_148629949	1.31856	FOXA2.p3	BC089373|Lrdd|57913|leucine-rich and death domain containing	BC099686|Lrdd|57913|leucine-rich and death domain containing	BC056987|Lrdd|57913|leucine-rich and death domain containing	AK004702|Lrdd|57913|leucine-rich and death domain containing	AK087880|Lrdd|57913|leucine-rich and death domain containing	AK156863|Lrdd|57913|leucine-rich and death domain containing
mm9_v1_chr4_-_62815137_62815208	1.31251	FOXA2.p3	X68680|Ambp|11699|alpha 1 microglobulin/bikunin	AK004907|Ambp|11699|alpha 1 microglobulin/bikunin	D28812|Ambp|11699|alpha 1 microglobulin/bikunin	NM_007443|Ambp|11699|alpha 1 microglobulin/bikunin	BC021660|Ambp|11699|alpha 1 microglobulin/bikunin
mm9_v1_chr7_+_107685608_107685745	1.29162	FOXA2.p3	AK161506|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	NM_183270|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK019895|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK088786|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116995|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116997|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC096605|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK008883|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC048574|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8
mm9_v1_chr8_-_112102946_112102953	1.28307	FOXA2.p3	BC138872|Hp|15439|haptoglobin	M96827|Hp|15439|haptoglobin
mm9_v1_chr11_+_20125239_20125296	1.28181	FOXA2.p3	AK078671|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr2_+_69560922_69560938	1.2688	FOXA2.p3	AK088007|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr16_-_94591826_94592078	1.26638	FOXA2.p3	AF216308|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	BC061117|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159619|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159620|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	AF216307|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr19_+_12708001_12708022	1.25718	FOXA2.p3	AK143803|Glyat|107146|glycine-N-acyltransferase	AK143901|Glyat|107146|glycine-N-acyltransferase	BC010799|Glyat|107146|glycine-N-acyltransferase	BC015294|Glyat|107146|glycine-N-acyltransferase
mm9_v1_chr5_-_87355527_87355556	1.24982	FOXA2.p3	BC027200|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	NM_152811|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK004971|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK050435|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1
mm9_v1_chr13_-_108516475_108516490	1.23578	FOXA2.p3	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr15_-_78299035_78299081	1.22032	FOXA2.p3	BC057674|Tmprss6|71753|transmembrane serine protease 6	AY240929|Tmprss6|71753|transmembrane serine protease 6	BC029645|Tmprss6|71753|transmembrane serine protease 6	NM_027902|Tmprss6|71753|transmembrane serine protease 6
mm9_v1_chr14_-_71166340_71166465	1.21976	FOXA2.p3	AJ297360|Xpo7|65246|exportin 7	AK041768|Xpo7|65246|exportin 7	AK051105|Xpo7|65246|exportin 7	AK035775|Xpo7|65246|exportin 7	BC029702|Xpo7|65246|exportin 7	AK164595|Xpo7|65246|exportin 7	NM_023045|Xpo7|65246|exportin 7
mm9_v1_chr12_+_78339071_78339134	1.21907	FOXA2.p3	BC010666|Fut8|53618|fucosyltransferase 8	AK051811|Fut8|53618|fucosyltransferase 8
mm9_v1_chr2_-_140497183_140497200	1.19711	FOXA2.p3	AK045146|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK021255|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	BC052043|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr6_+_135313010_135313048	1.19681	FOXA2.p3	AK158369|Emp1|13730|epithelial membrane protein 1	AK159752|Emp1|13730|epithelial membrane protein 1	AK171061|Emp1|13730|epithelial membrane protein 1	AK172607|Emp1|13730|epithelial membrane protein 1	AK157366|Emp1|13730|epithelial membrane protein 1	AK171675|Emp1|13730|epithelial membrane protein 1	AK172705|Emp1|13730|epithelial membrane protein 1	BC034257|Emp1|13730|epithelial membrane protein 1
mm9_v1_chr3_+_108163704_108163812	1.1597	FOXA2.p3	AK013673|Sort1|20661|sortilin 1
mm9_v1_chr7_-_129164546_129164728	1.1575	FOXA2.p3	AK187372|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK129280|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	BC062933|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK004632|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK154904|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK143691|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK159953|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	AK149798|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2	NM_028758|Gga2|74105|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm9_v1_chr5_+_16059312_16059745	1.15515	FOXA2.p3	AK052289|Hgf|15234|hepatocyte growth factor	AK042121|Hgf|15234|hepatocyte growth factor	NM_010427|Hgf|15234|hepatocyte growth factor	AK142159|Hgf|15234|hepatocyte growth factor	BC119228|Hgf|15234|hepatocyte growth factor	BC144764|Hgf|15234|hepatocyte growth factor	AK082461|Hgf|15234|hepatocyte growth factor	X72307|Hgf|15234|hepatocyte growth factor	X84046|Hgf|15234|hepatocyte growth factor	AF042856|Hgf|15234|hepatocyte growth factor	D10212|Hgf|15234|hepatocyte growth factor	D10213|Hgf|15234|hepatocyte growth factor	S71816|Hgf|15234|hepatocyte growth factor
mm9_v1_chr13_+_23622912_23622975	1.15342	FOXA2.p3	NM_153173|Hist1h4h|69386|histone cluster 1, H4h	AK007642|Hist1h4h|69386|histone cluster 1, H4h	BC087952|Hist1h4h|69386|histone cluster 1, H4h	BC028550|Hist1h4h|69386|histone cluster 1, H4h	BC058529|Hist1h4h|69386|histone cluster 1, H4h
mm9_v1_chr1_-_128634766_128634787	1.1422	FOXA2.p3	AK083792|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr1_-_141273617_141273676	1.13595	FOXA2.p3	AF406641|Crb1|170788|crumbs homolog 1 (Drosophila)	AY450552|Crb1|170788|crumbs homolog 1 (Drosophila)	NM_133239|Crb1|170788|crumbs homolog 1 (Drosophila)	AF492496|Crb1|170788|crumbs homolog 1 (Drosophila)
mm9_v1_chr7_+_27814096_27814122	1.128	FOXA2.p3	BC018356|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	NM_133657|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	BC094017|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	L06463|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12
mm9_v1_chr11_+_87895626_87895848	1.12557	FOXA2.p3	AK079148|Vezf1|22344|vascular endothelial zinc finger 1	AK018086|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr4_+_108520389_108520516	1.12344	FOXA2.p3	BC021493|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK003197|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	NM_029571|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK148185|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK150178|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK156755|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)
mm9_v1_chr8_-_87366624_87366670	1.09868	FOXA2.p3	X56603|Calr|12317|calreticulin
mm9_v1_chr1_+_158769044_158769153	1.08621	FOXA2.p3	AK142319|Angptl1|72713|angiopoietin-like 1	AK012888|Angptl1|72713|angiopoietin-like 1	BC082563|Angptl1|72713|angiopoietin-like 1	NM_028333|Angptl1|72713|angiopoietin-like 1
mm9_v1_chr5_-_38215607_38215829	1.0686	FOXA2.p3	AF308572|Msx1|17701|homeobox, msh-like 1	X14759|Msx1|17701|homeobox, msh-like 1	X59251|Msx1|17701|homeobox, msh-like 1	BC016426|Msx1|17701|homeobox, msh-like 1	AK077524|Msx1|17701|homeobox, msh-like 1	AK145726|Msx1|17701|homeobox, msh-like 1	AK078600|Msx1|17701|homeobox, msh-like 1	NM_010835|Msx1|17701|homeobox, msh-like 1
mm9_v1_chr17_-_36157472_36157645	1.06104	FOXA2.p3	NM_008207|H2-T24|15042|histocompatibility 2, T region locus 24
mm9_v1_chr3_-_27052794_27052801	1.06024	FOXA2.p3	NM_001177626|Ect2|13605|ect2 oncogene
mm9_v1_chr9_+_72584532_72584702	1.04974	FOXA2.p3	BC007184|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr3_+_116564564_116564609	1.04203	FOXA2.p3	NM_009146|Frrs1|20321|ferric-chelate reductase 1	AK075573|Frrs1|20321|ferric-chelate reductase 1	AK144933|Frrs1|20321|ferric-chelate reductase 1	AK162693|Frrs1|20321|ferric-chelate reductase 1	D50464|Frrs1|20321|ferric-chelate reductase 1
mm9_v1_chr6_-_65094862_65094901	1.04088	FOXA2.p3	D82072|Hpgds|54486|hematopoietic prostaglandin D synthase
mm9_v1_chr19_-_4906607_4906628	1.03451	FOXA2.p3	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr16_+_5086296_5086328	1.03137	FOXA2.p3	
mm9_v1_chr9_+_108851568_108851592	1.01991	FOXA2.p3	
mm9_v1_chr8_+_68910191_68910205	1.01798	FOXA2.p3	AK036489|March1|72925|membrane-associated ring finger (C3HC4) 1	AK089040|March1|72925|membrane-associated ring finger (C3HC4) 1	AK152592|March1|72925|membrane-associated ring finger (C3HC4) 1	AK163081|March1|72925|membrane-associated ring finger (C3HC4) 1	NM_001166375|March1|72925|membrane-associated ring finger (C3HC4) 1
mm9_v1_chr6_-_51413182_51413233	1.01646	FOXA2.p3	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr4_-_43512476_43512545	1.00553	FOXA2.p3	AK087493|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	BC080700|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	AK153880|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	NM_001013377|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene
mm9_v1_chr1_-_46910333_46910455	1.00337	FOXA2.p3	BC062918|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	NM_172653|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	BC052880|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10
mm9_v1_chr1_+_6720153_6720223	1.00238	FOXA2.p3	AK133743|St18|240690|suppression of tumorigenicity 18	BC118528|St18|240690|suppression of tumorigenicity 18	AK137440|St18|240690|suppression of tumorigenicity 18	AK141513|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr14_-_31756446_31756482	1.00203	FOXA2.p3	BC013465|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	X70391|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	BC028814|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	AK149500|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	NM_008406|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1
mm9_v1_chr15_-_96886327_96886398	1.00158	FOXA2.p3	AK164292|Slc38a4|69354|solute carrier family 38, member 4	AK167539|Slc38a4|69354|solute carrier family 38, member 4	AK051023|Slc38a4|69354|solute carrier family 38, member 4	NM_027052|Slc38a4|69354|solute carrier family 38, member 4
mm9_v1_chr4_+_59016013_59016081	0.984644	FOXA2.p3	NM_001033165|Dnajc25|72429|DnaJ (Hsp40) homolog, subfamily C, member 25
mm9_v1_chr3_+_17695743_17695745	0.978279	FOXA2.p3	AK046405|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene	AK032443|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene
mm9_v1_chr2_+_25036524_25036678	0.977809	FOXA2.p3	BC069891|Nrarp|67122|Notch-regulated ankyrin repeat protein	AK012426|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr12_-_103196366_103196464	0.973964	FOXA2.p3	AF537188|Atxn3|110616|ataxin 3	AK030842|Atxn3|110616|ataxin 3	AK008675|Atxn3|110616|ataxin 3	BC087880|Atxn3|110616|ataxin 3	BC049743|Atxn3|110616|ataxin 3	NM_001167914|Atxn3|110616|ataxin 3	NM_029705|Atxn3|110616|ataxin 3
mm9_v1_chr17_-_46290450_46290465	0.973293	FOXA2.p3	AK004224|Mad2l1bp|66591|MAD2L1 binding protein	AK007974|Mad2l1bp|66591|MAD2L1 binding protein	BC005768|Mad2l1bp|66591|MAD2L1 binding protein	AK220322|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr4_+_118081908_118082012	0.972654	FOXA2.p3	AK011080|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	NM_020000|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	NM_173719|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK147032|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK005422|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK148025|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	BC051683|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK008759|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	BC021870|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AB041805|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm9_v1_chr14_+_73637961_73638071	0.969524	FOXA2.p3	BC145940|Lpar6|67168|lysophosphatidic acid receptor 6	BC145942|Lpar6|67168|lysophosphatidic acid receptor 6
mm9_v1_chr16_+_37868511_37868587	0.961756	FOXA2.p3	AK147818|Lrrc58|320184|leucine rich repeat containing 58	BC141007|Lrrc58|320184|leucine rich repeat containing 58
mm9_v1_chr1_-_13364092_13364163	0.957746	FOXA2.p3	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr7_-_15023845_15023901	0.95729	FOXA2.p3	BC031851|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK050422|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr3_+_19857053_19857266	0.954276	FOXA2.p3	BC062957|Cp|12870|ceruloplasmin	NM_001042611|Cp|12870|ceruloplasmin	NM_007752|Cp|12870|ceruloplasmin	DQ336396|Cp|12870|ceruloplasmin	AK014835|Cp|12870|ceruloplasmin	AK043248|Cp|12870|ceruloplasmin	U49430|Cp|12870|ceruloplasmin	AK149523|Cp|12870|ceruloplasmin
mm9_v1_chr19_+_7131270_7131299	0.952264	FOXA2.p3	AK052998|Macrod1|107227|MACRO domain containing 1
mm9_v1_chr10_-_127325725_127325818	0.93218	FOXA2.p3	BC024603|Rdh7|54150|retinol dehydrogenase 7	AF056194|Rdh7|54150|retinol dehydrogenase 7	NM_017473|Rdh7|54150|retinol dehydrogenase 7	NM_001150749|Rdh7|54150|retinol dehydrogenase 7
mm9_v1_chr2_+_118872854_118872888	0.928921	FOXA2.p3	AK009772|Casc5|76464|cancer susceptibility candidate 5	NM_029617|Casc5|76464|cancer susceptibility candidate 5	BC080815|Casc5|76464|cancer susceptibility candidate 5	AK033132|Casc5|76464|cancer susceptibility candidate 5
mm9_v1_chr2_-_134380065_134380100	0.926285	FOXA2.p3	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr2_+_91297678_91297857	0.921768	FOXA2.p3	NM_001145857|Lrp4|228357|low density lipoprotein receptor-related protein 4	NM_172668|Lrp4|228357|low density lipoprotein receptor-related protein 4	BC132240|Lrp4|228357|low density lipoprotein receptor-related protein 4	AF247637|Lrp4|228357|low density lipoprotein receptor-related protein 4
mm9_v1_chr2_-_94104877_94104914	0.910143	FOXA2.p3	AK140370|E530001K10Rik|414123|RIKEN cDNA E530001K10 gene	AK089118|E530001K10Rik|414123|RIKEN cDNA E530001K10 gene
mm9_v1_chr6_+_29325052_29325077	0.908269	FOXA2.p3	AF177023|Calu|12321|calumenin
mm9_v1_chr10_+_18189773_18189786	0.907367	FOXA2.p3	BC030842|Nhsl1|215819|NHS-like 1	NM_001163592|Nhsl1|215819|NHS-like 1
mm9_v1_chr11_-_101413104_101413268	0.904393	FOXA2.p3	BC068303|Brca1|12189|breast cancer 1	U31625|Brca1|12189|breast cancer 1	U35641|Brca1|12189|breast cancer 1	U68174|Brca1|12189|breast cancer 1	U32446|Brca1|12189|breast cancer 1	AK144702|Brca1|12189|breast cancer 1	AK086173|Brca1|12189|breast cancer 1	NM_009764|Brca1|12189|breast cancer 1
mm9_v1_chr5_+_30969259_30969346	0.895855	FOXA2.p3	AF012709|Cenpa|12615|centromere protein A	NM_007681|Cenpa|12615|centromere protein A	AK040313|Cenpa|12615|centromere protein A	AK041138|Cenpa|12615|centromere protein A	AK089033|Cenpa|12615|centromere protein A	AK053763|Cenpa|12615|centromere protein A	AK010718|Cenpa|12615|centromere protein A	BC011038|Cenpa|12615|centromere protein A	AK011399|Cenpa|12615|centromere protein A	BC012280|Cenpa|12615|centromere protein A
mm9_v1_chr12_-_105011767_105011793	0.891024	FOXA2.p3	M75718|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr9_+_85739048_85739158	0.890484	FOXA2.p3	AK050794|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr9_-_101101334_101101402	0.881451	FOXA2.p3	AK169510|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	AK132175|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha	NM_172144|Ppp2r3a|235542|protein phosphatase 2, regulatory subunit B'', alpha
mm9_v1_chr16_+_15637951_15637990	0.879078	FOXA2.p3	AK084827|Prkdc|19090|protein kinase, DNA activated, catalytic polypeptide	NM_011159|Prkdc|19090|protein kinase, DNA activated, catalytic polypeptide	AB011543|Prkdc|19090|protein kinase, DNA activated, catalytic polypeptide	AB007544|Prkdc|19090|protein kinase, DNA activated, catalytic polypeptide	D87521|Prkdc|19090|protein kinase, DNA activated, catalytic polypeptide
mm9_v1_chrX_-_71598873_71598966	0.877634	FOXA2.p3	AK134624|Lage3|66192|L antigen family, member 3	BC027305|Lage3|66192|L antigen family, member 3	AK004210|Lage3|66192|L antigen family, member 3	AK002539|Lage3|66192|L antigen family, member 3	NM_025410|Lage3|66192|L antigen family, member 3
mm9_v1_chr14_+_120830603_120830641	0.876848	FOXA2.p3	AK003316|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr9_+_74696269_74696406	0.874693	FOXA2.p3	AK050237|Onecut1|15379|one cut domain, family member 1	AK051235|Onecut1|15379|one cut domain, family member 1	BC023444|Onecut1|15379|one cut domain, family member 1
mm9_v1_chr8_+_32239179_32239274	0.871326	FOXA2.p3	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chr11_-_106642357_106642481	0.862991	FOXA2.p3	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr2_-_140497204_140497211	0.861291	FOXA2.p3	AK028252|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK031464|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	AK161100|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_001172160|Flrt3|71436|fibronectin leucine rich transmembrane protein 3	NM_178382|Flrt3|71436|fibronectin leucine rich transmembrane protein 3
mm9_v1_chr1_-_36864987_36865029	0.853302	FOXA2.p3	BC120906|Tmem131|56030|transmembrane protein 131	BC139734|Tmem131|56030|transmembrane protein 131
mm9_v1_chr19_-_44103644_44103736	0.852069	FOXA2.p3	BC024068|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC034834|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC022141|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC025819|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	BC026766|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	AK050436|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	AK149451|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	NM_001001446|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44	NM_001167905|Cyp2c44|226143|cytochrome P450, family 2, subfamily c, polypeptide 44
mm9_v1_chr19_+_55816299_55816310	0.850884	FOXA2.p3	NM_001142918|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142919|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142920|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142921|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142922|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_001142923|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	NM_009333|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	BC011397|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chrX_+_160707362_160707541	0.844567	FOXA2.p3	AK134541|Pir|69656|pirin	NM_027153|Pir|69656|pirin	AK138314|Pir|69656|pirin	AK009757|Pir|69656|pirin	AK151301|Pir|69656|pirin	AK082922|Pir|69656|pirin	BC024062|Pir|69656|pirin	AK090023|Pir|69656|pirin
mm9_v1_chr1_+_45402907_45402949	0.838175	FOXA2.p3	AK029451|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr11_-_6526020_6526080	0.830809	FOXA2.p3	BC016483|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK129245|Tbrg4|21379|transforming growth factor beta regulated gene 4	BC031155|Tbrg4|21379|transforming growth factor beta regulated gene 4	BC031910|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK028966|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK144813|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK166760|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK168088|Tbrg4|21379|transforming growth factor beta regulated gene 4	NM_001130457|Tbrg4|21379|transforming growth factor beta regulated gene 4	NM_134011|Tbrg4|21379|transforming growth factor beta regulated gene 4
mm9_v1_chr4_-_106979732_106979773	0.829663	FOXA2.p3	AK002549|Dio1|13370|deiodinase, iodothyronine, type I	BC089608|Dio1|13370|deiodinase, iodothyronine, type I	NM_007860|Dio1|13370|deiodinase, iodothyronine, type I	U49861|Dio1|13370|deiodinase, iodothyronine, type I	BC019786|Dio1|13370|deiodinase, iodothyronine, type I	BC037080|Dio1|13370|deiodinase, iodothyronine, type I
mm9_v1_chr2_-_25439345_25439437	0.827394	FOXA2.p3	
mm9_v1_chr3_-_78949796_78949796	0.823023	FOXA2.p3	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr11_+_116295502_116295595	0.820833	FOXA2.p3	AK050732|Fam100b|319370|family with sequence similarity 100, member B	BC119080|Fam100b|319370|family with sequence similarity 100, member B	BC116983|Fam100b|319370|family with sequence similarity 100, member B
mm9_v1_chr7_+_19876447_19876478	0.808992	FOXA2.p3	NM_001025364|Rtn2|20167|reticulon 2 (Z-band associated protein)	AK160500|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038539|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr6_+_116214268_116214278	0.806583	FOXA2.p3	BC048508|Anubl1|67492|AN1, ubiquitin-like, homolog (Xenopus laevis)
mm9_v1_chr2_-_26332482_26332729	0.806389	FOXA2.p3	L02613|Notch1|18128|Notch gene homolog 1 (Drosophila)	AB101624|Notch1|18128|Notch gene homolog 1 (Drosophila)
mm9_v1_chr15_-_12522310_12522310	0.804951	FOXA2.p3	NM_001081064|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr9_+_78039786_78039851	0.791111	FOXA2.p3	AK008400|Gsta4|14860|glutathione S-transferase, alpha 4	AK008189|Gsta4|14860|glutathione S-transferase, alpha 4	AK011841|Gsta4|14860|glutathione S-transferase, alpha 4	AK019271|Gsta4|14860|glutathione S-transferase, alpha 4	AK009668|Gsta4|14860|glutathione S-transferase, alpha 4	AK010098|Gsta4|14860|glutathione S-transferase, alpha 4	AK008193|Gsta4|14860|glutathione S-transferase, alpha 4	AK008490|Gsta4|14860|glutathione S-transferase, alpha 4	AK011177|Gsta4|14860|glutathione S-transferase, alpha 4	BC012639|Gsta4|14860|glutathione S-transferase, alpha 4	L06047|Gsta4|14860|glutathione S-transferase, alpha 4
mm9_v1_chr18_-_43847367_43847426	0.788845	FOXA2.p3	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr15_+_92427539_92427556	0.787947	FOXA2.p3	NM_001164594|Pdzrn4|239618|PDZ domain containing RING finger 4	AK135524|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr15_-_97661807_97661936	0.785793	FOXA2.p3	AF207749|Hdac7|56233|histone deacetylase 7	AK040406|Hdac7|56233|histone deacetylase 7	AK150041|Hdac7|56233|histone deacetylase 7	AK036586|Hdac7|56233|histone deacetylase 7	AK044287|Hdac7|56233|histone deacetylase 7
mm9_v1_chr5_+_102910409_102910555	0.785581	FOXA2.p3	AK080986|Arhgap24|231532|Rho GTPase activating protein 24	NM_029270|Arhgap24|231532|Rho GTPase activating protein 24	NM_146161|Arhgap24|231532|Rho GTPase activating protein 24	AK052395|Arhgap24|231532|Rho GTPase activating protein 24
mm9_v1_chr16_+_22920274_22920459	0.78499	FOXA2.p3	NM_001083904|Fetub|59083|fetuin beta	NM_021564|Fetub|59083|fetuin beta	AY138459|Fetub|59083|fetuin beta	AJ242927|Fetub|59083|fetuin beta
mm9_v1_chr11_-_97490978_97491083	0.784418	FOXA2.p3	AK087411|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	BC055770|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene	NM_175332|E130012A19Rik|103551|RIKEN cDNA E130012A19 gene
mm9_v1_chr17_-_57367499_57367520	0.782068	FOXA2.p3	BC043338|C3|12266|complement component 3	K02782|C3|12266|complement component 3
mm9_v1_chrX_+_139997806_139997811	0.780402	FOXA2.p3	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr16_+_20672770_20672837	0.77987	FOXA2.p3	AK081982|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	NM_001005331|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	NM_145941|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr17_-_27165478_27165573	0.778606	FOXA2.p3	AK089220|Bak1|12018|BCL2-antagonist/killer 1	BC057589|Bak1|12018|BCL2-antagonist/killer 1	NM_007523|Bak1|12018|BCL2-antagonist/killer 1	Y13231|Bak1|12018|BCL2-antagonist/killer 1
mm9_v1_chr13_+_22127689_22127755	0.77588	FOXA2.p3	BC147143|Hist1h2bk|319184|histone cluster 1, H2bk	BC147144|Hist1h2bk|319184|histone cluster 1, H2bk	NM_175665|Hist1h2bk|319184|histone cluster 1, H2bk
mm9_v1_chr10_-_127648817_127648880	0.775156	FOXA2.p3	BC014757|Spryd4|66701|SPRY domain containing 4	NM_025716|Spryd4|66701|SPRY domain containing 4	AK014623|Spryd4|66701|SPRY domain containing 4	AK080726|Spryd4|66701|SPRY domain containing 4	AK082745|Spryd4|66701|SPRY domain containing 4
mm9_v1_chr6_+_141578016_141578059	0.772476	FOXA2.p3	AB031959|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2	NM_020495|Slco1b2|28253|solute carrier organic anion transporter family, member 1b2
mm9_v1_chr9_-_69608633_69608746	0.769178	FOXA2.p3	X92592|Foxb1|64290|forkhead box B1	U04198|Foxb1|64290|forkhead box B1	U90538|Foxb1|64290|forkhead box B1	NM_022378|Foxb1|64290|forkhead box B1
mm9_v1_chr5_-_54098762_54098942	0.764717	FOXA2.p3	BC020534|Cckar|12425|cholecystokinin A receptor	AK143895|Cckar|12425|cholecystokinin A receptor	AK004730|Cckar|12425|cholecystokinin A receptor	AK146738|Cckar|12425|cholecystokinin A receptor	AK147052|Cckar|12425|cholecystokinin A receptor	NM_009827|Cckar|12425|cholecystokinin A receptor
mm9_v1_chr3_-_115710131_115710328	0.764533	FOXA2.p3	AF529196|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AF233322|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC050193|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	BC017136|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK075802|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	AK010008|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7	NM_023214|Slc30a7|66500|solute carrier family 30 (zinc transporter), member 7
mm9_v1_chrX_-_35793335_35793510	0.762153	FOXA2.p3	AK184164|Lamp2|16784|lysosomal-associated membrane protein 2	AK217258|Lamp2|16784|lysosomal-associated membrane protein 2	AK128946|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr16_+_22892125_22892139	0.758166	FOXA2.p3	BC012678|Ahsg|11625|alpha-2-HS-glycoprotein	S96534|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr8_+_96678000_96678026	0.750935	FOXA2.p3	
mm9_v1_chr4_-_40704838_40704877	0.749193	FOXA2.p3	AB044414|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	BC020034|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	AK019174|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
mm9_v1_chr2_-_44965866_44965983	0.74825	FOXA2.p3	AK122312|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535781|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535783|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr8_-_87542451_87542752	0.746781	FOXA2.p3	AK212827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK183718|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK193379|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK180403|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK205686|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK216431|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr2_+_27020999_27021026	0.74434	FOXA2.p3	BC141022|Dbh|13166|dopamine beta hydroxylase	BC171949|Dbh|13166|dopamine beta hydroxylase	AK132245|Dbh|13166|dopamine beta hydroxylase	NM_138942|Dbh|13166|dopamine beta hydroxylase
mm9_v1_chr1_+_39044599_39044675	0.741952	FOXA2.p3	AK168509|Pdcl3|68833|phosducin-like 3	BC005601|Pdcl3|68833|phosducin-like 3	AK078372|Pdcl3|68833|phosducin-like 3	NM_026850|Pdcl3|68833|phosducin-like 3	AK004334|Pdcl3|68833|phosducin-like 3	AK169572|Pdcl3|68833|phosducin-like 3
mm9_v1_chr16_+_22892156_22892180	0.736876	FOXA2.p3	BC019822|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr4_+_114761644_114761734	0.722886	FOXA2.p3	BC013542|Pdzk1ip1|67182|PDZK1 interacting protein 1	AB009296|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr1_+_6720087_6720131	0.722655	FOXA2.p3	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr15_+_78860043_78860112	0.720176	FOXA2.p3	AK195119|H1f0|14958|H1 histone family, member 0
mm9_v1_chr9_-_55994906_55994921	0.713884	FOXA2.p3	AK207599|Tspan3|56434|tetraspanin 3	AK178223|Tspan3|56434|tetraspanin 3	AK180027|Tspan3|56434|tetraspanin 3	AK182665|Tspan3|56434|tetraspanin 3	AK188385|Tspan3|56434|tetraspanin 3	AK220124|Tspan3|56434|tetraspanin 3
mm9_v1_chr1_+_12708582_12708625	0.706408	FOXA2.p3	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr2_-_27331122_27331221	0.704628	FOXA2.p3	AK076472|Brd3|67382|bromodomain containing 3	AK136429|Brd3|67382|bromodomain containing 3	BC004832|Brd3|67382|bromodomain containing 3	AF269193|Brd3|67382|bromodomain containing 3	AK161164|Brd3|67382|bromodomain containing 3	AK167573|Brd3|67382|bromodomain containing 3	AK136007|Brd3|67382|bromodomain containing 3	AK160752|Brd3|67382|bromodomain containing 3	AK081471|Brd3|67382|bromodomain containing 3	AK037435|Brd3|67382|bromodomain containing 3	AK159827|Brd3|67382|bromodomain containing 3	NM_001113573|Brd3|67382|bromodomain containing 3	NM_001113574|Brd3|67382|bromodomain containing 3
mm9_v1_chr9_-_44610921_44611015	0.70439	FOXA2.p3	BC021608|Ttc36|192653|tetratricopeptide repeat domain 36	AK165811|Ttc36|192653|tetratricopeptide repeat domain 36	BC026825|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr18_-_6135887_6135919	0.697768	FOXA2.p3	BC037608|Arhgap12|75415|Rho GTPase activating protein 12	BC141184|Arhgap12|75415|Rho GTPase activating protein 12	BC145506|Arhgap12|75415|Rho GTPase activating protein 12
mm9_v1_chr1_+_9838330_9838477	0.694974	FOXA2.p3	AK030314|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_001037759|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166531|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK146561|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031328|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171959|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr1_+_43502537_43502605	0.692372	FOXA2.p3	AK051665|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	NM_010879|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	AK014949|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chr9_-_61761227_61761271	0.690991	FOXA2.p3	AK203941|Rplp1|56040|ribosomal protein, large, P1
mm9_v1_chr5_-_135097883_135097950	0.689851	FOXA2.p3	
mm9_v1_chr12_-_32635061_32635121	0.688877	FOXA2.p3	AK028949|Hbp1|73389|high mobility group box transcription factor 1	AK132503|Hbp1|73389|high mobility group box transcription factor 1	AK139211|Hbp1|73389|high mobility group box transcription factor 1	AK142187|Hbp1|73389|high mobility group box transcription factor 1	AK053005|Hbp1|73389|high mobility group box transcription factor 1	AK028674|Hbp1|73389|high mobility group box transcription factor 1	BC026853|Hbp1|73389|high mobility group box transcription factor 1
mm9_v1_chr6_+_29803751_29803890	0.685764	FOXA2.p3	AK172595|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr15_-_8049142_8049195	0.685115	FOXA2.p3	AK160933|Wdr70|545085|WD repeat domain 70	BC051482|Wdr70|545085|WD repeat domain 70	BC037184|Wdr70|545085|WD repeat domain 70	AK159714|Wdr70|545085|WD repeat domain 70
mm9_v1_chr19_-_30623890_30624012	0.680248	FOXA2.p3	AF030433|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	BC050189|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	NM_010051|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK141693|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK144119|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)
mm9_v1_chr5_-_129514313_129514509	0.673084	FOXA2.p3	BC046279|Stx2|13852|syntaxin 2	AK165552|Stx2|13852|syntaxin 2	AK146462|Stx2|13852|syntaxin 2	AK167577|Stx2|13852|syntaxin 2	AK168067|Stx2|13852|syntaxin 2	NM_007941|Stx2|13852|syntaxin 2	D10475|Stx2|13852|syntaxin 2
mm9_v1_chr12_+_81564081_81564252	0.671549	FOXA2.p3	AK167692|Exd2|97827|exonuclease 3'-5' domain containing 2	NM_133798|Exd2|97827|exonuclease 3'-5' domain containing 2	AK166390|Exd2|97827|exonuclease 3'-5' domain containing 2	AK146901|Exd2|97827|exonuclease 3'-5' domain containing 2	AK158201|Exd2|97827|exonuclease 3'-5' domain containing 2	AK164329|Exd2|97827|exonuclease 3'-5' domain containing 2	AK147922|Exd2|97827|exonuclease 3'-5' domain containing 2
mm9_v1_chr11_+_85646309_85646316	0.666777	FOXA2.p3	AK149348|Tbx2|21385|T-box 2
mm9_v1_chr9_+_46076689_46076697	0.666044	FOXA2.p3	AF327059|Apoa5|66113|apolipoprotein A-V	NM_080434|Apoa5|66113|apolipoprotein A-V
mm9_v1_chr2_+_34631709_34631818	0.665828	FOXA2.p3	AK208906|Hspa5|14828|heat shock protein 5
mm9_v1_chr2_+_109857966_109858261	0.663557	FOXA2.p3	AK147056|Ccdc34|68201|coiled-coil domain containing 34	NM_026613|Ccdc34|68201|coiled-coil domain containing 34	BC108339|Ccdc34|68201|coiled-coil domain containing 34	AK019172|Ccdc34|68201|coiled-coil domain containing 34	AK033555|Ccdc34|68201|coiled-coil domain containing 34	AK019247|Ccdc34|68201|coiled-coil domain containing 34	AK012383|Ccdc34|68201|coiled-coil domain containing 34	BC062248|Ccdc34|68201|coiled-coil domain containing 34	AK014021|Ccdc34|68201|coiled-coil domain containing 34	BC089458|Ccdc34|68201|coiled-coil domain containing 34	BC049229|Ccdc34|68201|coiled-coil domain containing 34
mm9_v1_chr2_-_120862405_120862570	0.661244	FOXA2.p3	AK158219|Epb4.2|13828|erythrocyte protein band 4.2	AK158370|Epb4.2|13828|erythrocyte protein band 4.2	AK165288|Epb4.2|13828|erythrocyte protein band 4.2	AK172410|Epb4.2|13828|erythrocyte protein band 4.2	AK158247|Epb4.2|13828|erythrocyte protein band 4.2	BC053739|Epb4.2|13828|erythrocyte protein band 4.2	AK143841|Epb4.2|13828|erythrocyte protein band 4.2	L35933|Epb4.2|13828|erythrocyte protein band 4.2	BC066194|Epb4.2|13828|erythrocyte protein band 4.2	BC066806|Epb4.2|13828|erythrocyte protein band 4.2	NM_013513|Epb4.2|13828|erythrocyte protein band 4.2	U04055|Epb4.2|13828|erythrocyte protein band 4.2	AK133896|Epb4.2|13828|erythrocyte protein band 4.2	AK137484|Epb4.2|13828|erythrocyte protein band 4.2
mm9_v1_chr17_+_93598761_93598761	0.657484	FOXA2.p3	BC057344|Adcyap1|11516|adenylate cyclase activating polypeptide 1	NM_009625|Adcyap1|11516|adenylate cyclase activating polypeptide 1
mm9_v1_chr5_+_123592177_123592311	0.65652	FOXA2.p3	AK141316|Setd1b|208043|SET domain containing 1B
mm9_v1_chr12_-_109513626_109513626	0.655272	FOXA2.p3	NM_001159910|Ccdc85c|668158|coiled-coil domain containing 85C
mm9_v1_chr5_-_75440460_75440521	0.65292	FOXA2.p3	BC116971|Chic2|74277|cysteine-rich hydrophobic domain 2	BC116973|Chic2|74277|cysteine-rich hydrophobic domain 2
mm9_v1_chr11_+_117127762_117127806	0.652474	FOXA2.p3	AK122415|Sept9|53860|septin 9
mm9_v1_chr19_+_7131234_7131258	0.647267	FOXA2.p3	NM_134147|Macrod1|107227|MACRO domain containing 1
mm9_v1_chr11_+_77524899_77525029	0.643282	FOXA2.p3	AK003251|Nufip2|68564|nuclear fragile X mental retardation protein interacting protein 2
mm9_v1_chr16_+_10412017_10412067	0.639876	FOXA2.p3	NM_011955|Nubp1|26425|nucleotide binding protein 1	AK157212|Nubp1|26425|nucleotide binding protein 1	BC031430|Nubp1|26425|nucleotide binding protein 1	BC055436|Nubp1|26425|nucleotide binding protein 1	AK020876|Nubp1|26425|nucleotide binding protein 1	BC047926|Nubp1|26425|nucleotide binding protein 1	AF114170|Nubp1|26425|nucleotide binding protein 1
mm9_v1_chr11_+_69906223_69906270	0.637409	FOXA2.p3	X53042|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr1_-_196957694_196957780	0.635577	FOXA2.p3	AK017702|Cr1l|12946|complement component (3b/4b) receptor 1-like	AK004825|Cr1l|12946|complement component (3b/4b) receptor 1-like	NM_013499|Cr1l|12946|complement component (3b/4b) receptor 1-like
mm9_v1_chr9_-_61918412_61918412	0.635034	FOXA2.p3	BC094587|Glce|93683|glucuronyl C5-epimerase	NM_033320|Glce|93683|glucuronyl C5-epimerase
mm9_v1_chr9_+_118415358_118415568	0.634563	FOXA2.p3	AK161568|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AK172292|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC037641|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AF051357|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC003268|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC096467|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	NM_018748|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC023102|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC057561|Golga4|54214|golgi autoantigen, golgin subfamily a, 4
mm9_v1_chr5_-_138181225_138181225	0.630187	FOXA2.p3	AB429289|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene	BC057372|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene	NM_175521|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene
mm9_v1_chr17_+_40948047_40948124	0.629915	FOXA2.p3	AK157847|Rhag|19743|Rhesus blood group-associated A glycoprotein	AF057526|Rhag|19743|Rhesus blood group-associated A glycoprotein	AK143851|Rhag|19743|Rhesus blood group-associated A glycoprotein	NM_011269|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC101941|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC101942|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC103512|Rhag|19743|Rhesus blood group-associated A glycoprotein	BC103662|Rhag|19743|Rhesus blood group-associated A glycoprotein	AB015192|Rhag|19743|Rhesus blood group-associated A glycoprotein	AF065395|Rhag|19743|Rhesus blood group-associated A glycoprotein
mm9_v1_chr10_+_127525538_127525558	0.62257	FOXA2.p3	AK193315|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK201737|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK212560|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK213511|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK216817|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK217965|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK217971|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK220031|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK220050|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr11_+_69906145_69906162	0.620574	FOXA2.p3	BC011197|Asgr2|11890|asialoglycoprotein receptor 2	NM_007493|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr15_-_89207467_89207531	0.619322	FOXA2.p3	AB060274|Tymp|72962|thymidine phosphorylase	NM_138302|Tymp|72962|thymidine phosphorylase
mm9_v1_chr5_+_150076605_150076688	0.610538	FOXA2.p3	AK004002|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	BC026209|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	NM_009663|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	AK075967|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	M96554|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein
mm9_v1_chr6_-_142271469_142271500	0.608115	FOXA2.p3	AF240694|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	NM_130861|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5	AK029706|Slco1a5|108096|solute carrier organic anion transporter family, member 1a5
mm9_v1_chr11_+_110260435_110260577	0.607254	FOXA2.p3	AK043482|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK086722|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK138757|Map2k6|26399|mitogen-activated protein kinase kinase 6	NM_011943|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK077712|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK140289|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK141708|Map2k6|26399|mitogen-activated protein kinase kinase 6	BC075652|Map2k6|26399|mitogen-activated protein kinase kinase 6	AK162671|Map2k6|26399|mitogen-activated protein kinase kinase 6	X97052|Map2k6|26399|mitogen-activated protein kinase kinase 6
mm9_v1_chr1_+_51346086_51346100	0.605193	FOXA2.p3	AK084096|Sdpr|20324|serum deprivation response
mm9_v1_chr3_-_146432922_146432972	0.602966	FOXA2.p3	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr2_-_24775083_24775154	0.601532	FOXA2.p3	AK054555|Ehmt1|77683|euchromatic histone methyltransferase 1	AK052174|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001012518|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109686|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_001109687|Ehmt1|77683|euchromatic histone methyltransferase 1	NM_172545|Ehmt1|77683|euchromatic histone methyltransferase 1	AK084994|Ehmt1|77683|euchromatic histone methyltransferase 1	AK043898|Ehmt1|77683|euchromatic histone methyltransferase 1	AK082062|Ehmt1|77683|euchromatic histone methyltransferase 1	AB205007|Ehmt1|77683|euchromatic histone methyltransferase 1
mm9_v1_chr1_-_141755209_141755302	0.60064	FOXA2.p3	AJ565908|BC026782|545366|cDNA sequence BC026782	M29007|BC026782|545366|cDNA sequence BC026782	AK149511|BC026782|545366|cDNA sequence BC026782	NM_001025575|BC026782|545366|cDNA sequence BC026782
mm9_v1_chr9_+_14589080_14589119	0.597293	FOXA2.p3	U58987|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	U60318|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168208|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146234|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146370|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168180|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)
mm9_v1_chr5_-_17355533_17355611	0.596851	FOXA2.p3	AK172162|Cd36|12491|CD36 antigen	BC010262|Cd36|12491|CD36 antigen	AK150648|Cd36|12491|CD36 antigen	NM_001159556|Cd36|12491|CD36 antigen	NM_001159557|Cd36|12491|CD36 antigen
mm9_v1_chrX_+_42444080_42444121	0.590304	FOXA2.p3	BC060289|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene	NM_026841|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene	BC094615|1110059M19Rik|68800|RIKEN cDNA 1110059M19 gene
mm9_v1_chr6_+_29644178_29644255	0.58644	FOXA2.p3	AF276890|Tspan33|232670|tetraspanin 33	AK172176|Tspan33|232670|tetraspanin 33	AK004954|Tspan33|232670|tetraspanin 33	BC024685|Tspan33|232670|tetraspanin 33	NM_146173|Tspan33|232670|tetraspanin 33
mm9_v1_chr1_+_157882793_157883024	0.582565	FOXA2.p3	NM_172843|Tor1aip2|240832|torsin A interacting protein 2	AK150117|Tor1aip2|240832|torsin A interacting protein 2	NM_001160180|Tor1aip2|240832|torsin A interacting protein 2
mm9_v1_chr5_-_111239017_111239099	0.581578	FOXA2.p3	BC059835|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK148317|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	AK156534|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	BC057121|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)	NM_009469|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr16_+_16303044_16303113	0.581367	FOXA2.p3	AK083653|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	AK008774|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	AK138504|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	BC060295|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)	NM_198246|Yars2|70120|tyrosyl-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr7_+_116081258_116081309	0.570819	FOXA2.p3	AK217928|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK192917|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr9_-_119213954_119213965	0.569269	FOXA2.p3	AK031790|Oxsr1|108737|oxidative-stress responsive 1	AK075837|Oxsr1|108737|oxidative-stress responsive 1	NM_133985|Oxsr1|108737|oxidative-stress responsive 1
mm9_v1_chr11_-_50108981_50109027	0.568603	FOXA2.p3	AK004422|Canx|12330|calnexin
mm9_v1_chr10_+_20059547_20059574	0.567529	FOXA2.p3	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr9_+_107949197_107949310	0.56444	FOXA2.p3	
mm9_v1_chr3_+_133902563_133902608	0.564226	FOXA2.p3	BC082332|Cxxc4|319478|CXXC finger 4
mm9_v1_chr1_-_99873795_99873812	0.56333	FOXA2.p3	BC129869|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr9_-_96233411_96233654	0.562245	FOXA2.p3	AK217555|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK213033|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK205378|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK217181|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK178890|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK181142|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK185963|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK212665|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK214140|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK216038|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218295|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218384|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr10_-_116782524_116782604	0.558123	FOXA2.p3	AK086495|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr11_+_78115115_78115156	0.557411	FOXA2.p3	AK052228|Spag5|54141|sperm associated antigen 5	BC052672|Spag5|54141|sperm associated antigen 5	AF420307|Spag5|54141|sperm associated antigen 5	X81633|Spag5|54141|sperm associated antigen 5
mm9_v1_chr19_-_39537540_39537568	0.556298	FOXA2.p3	AF047725|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	AK050051|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	BC150721|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38	NM_010002|Cyp2c38|13097|cytochrome P450, family 2, subfamily c, polypeptide 38
mm9_v1_chr6_-_120307360_120307396	0.555424	FOXA2.p3	BC018387|Ccdc77|67200|coiled-coil domain containing 77	AK012598|Ccdc77|67200|coiled-coil domain containing 77	NM_026028|Ccdc77|67200|coiled-coil domain containing 77	AK010251|Ccdc77|67200|coiled-coil domain containing 77
mm9_v1_chr9_-_95390211_95390302	0.552645	FOXA2.p3	AK179363|2610101N10Rik|67958|RIKEN cDNA 2610101N10 gene
mm9_v1_chr11_+_68859125_68859285	0.549443	FOXA2.p3	NM_011496|Aurkb|20877|aurora kinase B	AK132006|Aurkb|20877|aurora kinase B	BC003261|Aurkb|20877|aurora kinase B	AK075951|Aurkb|20877|aurora kinase B	U69107|Aurkb|20877|aurora kinase B	AK191945|Aurkb|20877|aurora kinase B
mm9_v1_chr6_+_135313056_135313087	0.54902	FOXA2.p3	AK168806|Emp1|13730|epithelial membrane protein 1	U25633|Emp1|13730|epithelial membrane protein 1	BC138491|Emp1|13730|epithelial membrane protein 1
mm9_v1_chr16_+_37868418_37868496	0.547125	FOXA2.p3	AK090204|Lrrc58|320184|leucine rich repeat containing 58	AK049274|Lrrc58|320184|leucine rich repeat containing 58	NM_177093|Lrrc58|320184|leucine rich repeat containing 58
mm9_v1_chr8_-_27109536_27109553	0.544697	FOXA2.p3	
mm9_v1_chrX_-_71618556_71618610	0.544253	FOXA2.p3	EU599043|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599044|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599045|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	BC027440|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	NM_145406|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr2_+_156601175_156601221	0.54139	FOXA2.p3	AK007972|Myl9|98932|myosin, light polypeptide 9, regulatory	AK020258|Myl9|98932|myosin, light polypeptide 9, regulatory	NM_172118|Myl9|98932|myosin, light polypeptide 9, regulatory
mm9_v1_chr16_+_30065419_30065442	0.539881	FOXA2.p3	AK133538|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	AK132536|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC018375|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	BC051428|Hes1|15205|hairy and enhancer of split 1 (Drosophila)	NM_008235|Hes1|15205|hairy and enhancer of split 1 (Drosophila)
mm9_v1_chr11_+_3931731_3931881	0.539068	FOXA2.p3	BC026948|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	NM_146013|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	AK028954|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)
mm9_v1_chr13_+_73468441_73468488	0.537751	FOXA2.p3	AK160778|Mrpl36|94066|mitochondrial ribosomal protein L36	BC009166|Mrpl36|94066|mitochondrial ribosomal protein L36	NM_053163|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131597|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131601|Mrpl36|94066|mitochondrial ribosomal protein L36	AK131604|Mrpl36|94066|mitochondrial ribosomal protein L36	AK075780|Mrpl36|94066|mitochondrial ribosomal protein L36	AB049655|Mrpl36|94066|mitochondrial ribosomal protein L36
mm9_v1_chr9_+_108382180_108382248	0.537632	FOXA2.p3	NM_008483|Lamb2|16779|laminin, beta 2	AK140351|Lamb2|16779|laminin, beta 2	AK158444|Lamb2|16779|laminin, beta 2
mm9_v1_chr9_-_20954341_20954417	0.536524	FOXA2.p3	AK013255|Cdc37|12539|cell division cycle 37 homolog (S. cerevisiae)	NM_016742|Cdc37|12539|cell division cycle 37 homolog (S. cerevisiae)	AK168651|Cdc37|12539|cell division cycle 37 homolog (S. cerevisiae)	BC060079|Cdc37|12539|cell division cycle 37 homolog (S. cerevisiae)	AK010494|Cdc37|12539|cell division cycle 37 homolog (S. cerevisiae)	AK145671|Cdc37|12539|cell division cycle 37 homolog (S. cerevisiae)	U43076|Cdc37|12539|cell division cycle 37 homolog (S. cerevisiae)
mm9_v1_chr9_+_53149188_53149418	0.533486	FOXA2.p3	AK046924|Exph5|320051|exophilin 5	AK044881|Exph5|320051|exophilin 5
mm9_v1_chr11_+_33947115_33947287	0.533011	FOXA2.p3	AK036727|Lcp2|16822|lymphocyte cytosolic protein 2	AK037970|Lcp2|16822|lymphocyte cytosolic protein 2	U20159|Lcp2|16822|lymphocyte cytosolic protein 2	AK168134|Lcp2|16822|lymphocyte cytosolic protein 2	AK153374|Lcp2|16822|lymphocyte cytosolic protein 2	BC006948|Lcp2|16822|lymphocyte cytosolic protein 2	NM_010696|Lcp2|16822|lymphocyte cytosolic protein 2
mm9_v1_chr1_+_38108051_38108073	0.532083	FOXA2.p3	AK037432|Eif5b|226982|eukaryotic translation initiation factor 5B
mm9_v1_chr16_+_20672847_20672848	0.530151	FOXA2.p3	AK134557|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr7_-_121398132_121398234	0.529587	FOXA2.p3	AF231925|Copb1|70349|coatomer protein complex, subunit beta 1	AK172214|Copb1|70349|coatomer protein complex, subunit beta 1	BC030837|Copb1|70349|coatomer protein complex, subunit beta 1	NM_033370|Copb1|70349|coatomer protein complex, subunit beta 1	AK082977|Copb1|70349|coatomer protein complex, subunit beta 1	AK149828|Copb1|70349|coatomer protein complex, subunit beta 1	AK011453|Copb1|70349|coatomer protein complex, subunit beta 1	AK152222|Copb1|70349|coatomer protein complex, subunit beta 1	AK161544|Copb1|70349|coatomer protein complex, subunit beta 1	AK135168|Copb1|70349|coatomer protein complex, subunit beta 1
mm9_v1_chr10_+_21698470_21698479	0.529002	FOXA2.p3	NM_001161847|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chrX_+_146981989_146982012	0.528983	FOXA2.p3	AK002642|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK165262|Alas2|11656|aminolevulinic acid synthase 2, erythroid	M63244|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK165257|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK172094|Alas2|11656|aminolevulinic acid synthase 2, erythroid	M15268|Alas2|11656|aminolevulinic acid synthase 2, erythroid	BC150870|Alas2|11656|aminolevulinic acid synthase 2, erythroid
mm9_v1_chr6_-_113678282_113678406	0.524859	FOXA2.p3	
mm9_v1_chr5_+_31357119_31357185	0.524668	FOXA2.p3	BC053097|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	NM_023525|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC060119|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr12_+_75028976_75029036	0.524256	FOXA2.p3	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr9_-_44611055_44611072	0.524111	FOXA2.p3	AK149384|Ttc36|192653|tetratricopeptide repeat domain 36
mm9_v1_chr14_-_100548982_100549014	0.523383	FOXA2.p3	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr3_+_94497485_94497530	0.521682	FOXA2.p3	NM_019414|Selenbp2|20342|selenium binding protein 2	S56599|Selenbp2|20342|selenium binding protein 2	BC024106|Selenbp2|20342|selenium binding protein 2
mm9_v1_chr2_+_91386476_91386497	0.519666	FOXA2.p3	BC017140|Ckap5|75786|cytoskeleton associated protein 5	BC089032|Ckap5|75786|cytoskeleton associated protein 5	NM_001165989|Ckap5|75786|cytoskeleton associated protein 5	NM_029437|Ckap5|75786|cytoskeleton associated protein 5	BC138334|Ckap5|75786|cytoskeleton associated protein 5	BC096422|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr4_-_116944199_116944220	0.516505	FOXA2.p3	
mm9_v1_chr14_-_111154292_111154370	0.514121	FOXA2.p3	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr7_+_119253816_119253899	0.513031	FOXA2.p3	AK015683|Usp47|74996|ubiquitin specific peptidase 47
mm9_v1_chr12_-_104895307_104895340	0.509457	FOXA2.p3	AK145842|Serpina6|12401|serine (or cysteine) peptidase inhibitor, clade A, member 6
mm9_v1_chr3_+_129235284_129235325	0.508022	FOXA2.p3	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr13_+_51245730_51245816	0.507875	FOXA2.p3	
mm9_v1_chr2_+_34631438_34631582	0.506671	FOXA2.p3	AK218616|Hspa5|14828|heat shock protein 5	AK186478|Hspa5|14828|heat shock protein 5	AK192310|Hspa5|14828|heat shock protein 5
mm9_v1_chr16_+_87731736_87731769	0.505969	FOXA2.p3	AK078031|Bach1|12013|BTB and CNC homology 1
mm9_v1_chr5_+_151325197_151325232	0.505939	FOXA2.p3	AK148272|Brca2|12190|breast cancer 2	NM_009765|Brca2|12190|breast cancer 2	AK087379|Brca2|12190|breast cancer 2	NM_001081001|Brca2|12190|breast cancer 2	AK164598|Brca2|12190|breast cancer 2	U65594|Brca2|12190|breast cancer 2	AK145017|Brca2|12190|breast cancer 2
mm9_v1_chr17_+_36974084_36974137	0.503584	FOXA2.p3	AK171019|Trim26|22670|tripartite motif-containing 26	NM_001025599|Trim26|22670|tripartite motif-containing 26	AK042252|Trim26|22670|tripartite motif-containing 26	BC037110|Trim26|22670|tripartite motif-containing 26
mm9_v1_chr5_+_144578694_144578848	0.499159	FOXA2.p3	AK014775|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	AK156492|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	AK158437|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	BC111035|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	AK173160|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1	AK020887|Eif2ak1|15467|eukaryotic translation initiation factor 2 alpha kinase 1
mm9_v1_chr16_-_76288569_76288581	0.498845	FOXA2.p3	BC062260|Nrip1|268903|nuclear receptor interacting protein 1
mm9_v1_chr6_-_85819035_85819112	0.493545	FOXA2.p3	AK050449|Cml2|93673|camello-like 2	AF163315|Cml2|93673|camello-like 2
mm9_v1_chr10_+_5151833_5151833	0.492402	FOXA2.p3	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr6_+_134961629_134961652	0.482603	FOXA2.p3	NM_026360|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK010310|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132242|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC132244|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	AK076982|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC060168|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	BC095944|Ddx47|67755|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
mm9_v1_chr2_+_179805287_179805329	0.480626	FOXA2.p3	AK163448|Gtpbp5|52856|GTP binding protein 5	AK040689|Gtpbp5|52856|GTP binding protein 5	NM_001083328|Gtpbp5|52856|GTP binding protein 5	NM_001083329|Gtpbp5|52856|GTP binding protein 5	NM_028422|Gtpbp5|52856|GTP binding protein 5	NM_181424|Gtpbp5|52856|GTP binding protein 5	AK013710|Gtpbp5|52856|GTP binding protein 5	BC025144|Gtpbp5|52856|GTP binding protein 5
mm9_v1_chr12_-_85741801_85741813	0.479598	FOXA2.p3	AK079267|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK002618|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr2_+_164571458_164571553	0.477786	FOXA2.p3	AK018299|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AK145239|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AK168357|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AK168315|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	BC003486|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	NM_133763|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AB045974|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1
mm9_v1_chr6_-_114871769_114871855	0.475019	FOXA2.p3	BC048841|Vgll4|232334|vestigial like 4 (Drosophila)	NM_177683|Vgll4|232334|vestigial like 4 (Drosophila)	BC060305|Vgll4|232334|vestigial like 4 (Drosophila)	AK144447|Vgll4|232334|vestigial like 4 (Drosophila)	AK078466|Vgll4|232334|vestigial like 4 (Drosophila)
mm9_v1_chr14_-_62301012_62301198	0.471763	FOXA2.p3	AK080165|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK139063|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK134888|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK042416|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK084358|Dleu2|668253|deleted in lymphocytic leukemia, 2	AF380423|Dleu2|668253|deleted in lymphocytic leukemia, 2	AK165901|Dleu2|668253|deleted in lymphocytic leukemia, 2
mm9_v1_chr11_-_59025422_59025528	0.46941	FOXA2.p3	AK211704|Arf1|11840|ADP-ribosylation factor 1	AK195749|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr15_+_6395311_6395349	0.468326	FOXA2.p3	BC011137|C9|12279|complement component 9	NM_013485|C9|12279|complement component 9
mm9_v1_chr10_-_33671000_33671074	0.466204	FOXA2.p3	AK052071|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK160928|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK046191|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK164710|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	NM_028287|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK012263|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	BC089514|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK077730|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK164346|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK077304|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK172184|Zufsp|72580|zinc finger with UFM1-specific peptidase domain
mm9_v1_chr17_+_29227908_29227961	0.465402	FOXA2.p3	NM_001111099|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr10_-_88996314_88996370	0.460944	FOXA2.p3	U09417|Nr1h4|20186|nuclear receptor subfamily 1, group H, member 4	NM_001163504|Nr1h4|20186|nuclear receptor subfamily 1, group H, member 4
mm9_v1_chr6_+_64992810_64992853	0.459291	FOXA2.p3	AK134442|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK011724|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	AK122454|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr6_+_47827735_47827748	0.457293	FOXA2.p3	AK188102|Zfp282|101095|zinc finger protein 282
mm9_v1_chr10_+_127485339_127485356	0.456026	FOXA2.p3	
mm9_v1_chr11_-_68635236_68635451	0.455253	FOXA2.p3	AK194070|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr2_+_121854287_121854425	0.454472	FOXA2.p3	AK148004|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK154934|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK161038|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	NM_144545|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	BC080788|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK147154|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J	AK019219|Eif3j|78655|eukaryotic translation initiation factor 3, subunit J
mm9_v1_chr3_+_102877936_102877949	0.454437	FOXA2.p3	NM_001033303|Ampd1|229665|adenosine monophosphate deaminase 1	AK137549|Ampd1|229665|adenosine monophosphate deaminase 1	AK132524|Ampd1|229665|adenosine monophosphate deaminase 1
mm9_v1_chr2_-_172765592_172765841	0.452821	FOXA2.p3	AK020411|Bmp7|12162|bone morphogenetic protein 7	X56906|Bmp7|12162|bone morphogenetic protein 7	BC010771|Bmp7|12162|bone morphogenetic protein 7	NM_007557|Bmp7|12162|bone morphogenetic protein 7
mm9_v1_chr5_+_31357245_31357300	0.451923	FOXA2.p3	BC137856|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144972|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	BC144973|Cad|69719|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm9_v1_chr6_-_85819124_85819161	0.45125	FOXA2.p3	NM_053096|Cml2|93673|camello-like 2	BC039773|Cml2|93673|camello-like 2
mm9_v1_chr5_-_31482270_31482315	0.451132	FOXA2.p3	AK083636|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	BC034369|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK151300|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK035792|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK043944|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK152439|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK149771|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK159938|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK088596|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK138760|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK004895|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta	AK154056|Gtf3c2|71752|general transcription factor IIIC, polypeptide 2, beta
mm9_v1_chr16_-_34263047_34263052	0.450619	FOXA2.p3	AK159031|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr17_-_56416148_56416230	0.442878	FOXA2.p3	AK054219|Ticam1|106759|toll-like receptor adaptor molecule 1	AK089679|Ticam1|106759|toll-like receptor adaptor molecule 1	AK083836|Ticam1|106759|toll-like receptor adaptor molecule 1	AK086237|Ticam1|106759|toll-like receptor adaptor molecule 1	BC037048|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155906|Ticam1|106759|toll-like receptor adaptor molecule 1	AK171578|Ticam1|106759|toll-like receptor adaptor molecule 1	AK143766|Ticam1|106759|toll-like receptor adaptor molecule 1	AK150150|Ticam1|106759|toll-like receptor adaptor molecule 1	AK155245|Ticam1|106759|toll-like receptor adaptor molecule 1	NM_174989|Ticam1|106759|toll-like receptor adaptor molecule 1
mm9_v1_chr4_+_57907032_57907040	0.441619	FOXA2.p3	AK086796|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr7_-_30290470_30290595	0.440181	FOXA2.p3	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chrX_-_101866402_101866402	0.437449	FOXA2.p3	AK132304|Zdhhc15|108672|zinc finger, DHHC domain containing 15	NM_175358|Zdhhc15|108672|zinc finger, DHHC domain containing 15
mm9_v1_chr15_-_103085703_103085858	0.436428	FOXA2.p3	BC062171|Nfe2|18022|nuclear factor, erythroid derived 2	NM_008685|Nfe2|18022|nuclear factor, erythroid derived 2	L09600|Nfe2|18022|nuclear factor, erythroid derived 2
mm9_v1_chr5_-_23012407_23012525	0.434751	FOXA2.p3	AK044922|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK201776|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr16_+_20672854_20672888	0.434242	FOXA2.p3	AK053144|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK142399|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK133903|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK139371|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK162698|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066038|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr11_-_33047217_33047399	0.433927	FOXA2.p3	AK078245|Fgf18|14172|fibroblast growth factor 18	AB004639|Fgf18|14172|fibroblast growth factor 18	AF211187|Fgf18|14172|fibroblast growth factor 18	AF075291|Fgf18|14172|fibroblast growth factor 18	NM_008005|Fgf18|14172|fibroblast growth factor 18
mm9_v1_chr1_-_141456740_141456821	0.433587	FOXA2.p3	BC111870|Cfhr1|50702|complement factor H-related 1	M29008|Cfhr1|50702|complement factor H-related 1	NM_015780|Cfhr1|50702|complement factor H-related 1
mm9_v1_chr10_-_90612412_90612509	0.428978	FOXA2.p3	AK208952|Tmpo|21917|thymopoietin
mm9_v1_chr19_+_20676453_20676504	0.426485	FOXA2.p3	M74570|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC044729|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC054386|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	NM_013467|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC035322|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	S75713|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1
mm9_v1_chr7_+_100023762_100023966	0.425766	FOXA2.p3	NM_028243|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011112|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK051677|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK166282|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011816|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC089575|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK054462|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC055022|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC026424|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)
mm9_v1_chr6_-_56312803_56312803	0.420948	FOXA2.p3	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr11_-_51799215_51799347	0.419359	FOXA2.p3	AK190260|Ube2b|22210|ubiquitin-conjugating enzyme E2B, RAD6 homology (S. cerevisiae)
mm9_v1_chr5_-_148133915_148134021	0.419098	FOXA2.p3	DQ225767|Prhoxnb|231903|parahox cluster neighbor	BC147779|Prhoxnb|231903|parahox cluster neighbor	BC147790|Prhoxnb|231903|parahox cluster neighbor	NM_001039678|Prhoxnb|231903|parahox cluster neighbor
mm9_v1_chr8_+_36740640_36740782	0.417911	FOXA2.p3	AK010068|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr19_+_30307417_30307431	0.417909	FOXA2.p3	AK149484|Mbl2|17195|mannose-binding lectin (protein C) 2	S42294|Mbl2|17195|mannose-binding lectin (protein C) 2	BC010760|Mbl2|17195|mannose-binding lectin (protein C) 2
mm9_v1_chr9_-_44152208_44152210	0.416985	FOXA2.p3	AK166734|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr6_-_41654290_41654346	0.414886	FOXA2.p3	AK028430|Kel|23925|Kell blood group	AF252870|Kel|23925|Kell blood group	NM_032540|Kel|23925|Kell blood group
mm9_v1_chr18_-_12914177_12914270	0.410241	FOXA2.p3	AK209493|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr10_+_62849310_62849422	0.409455	FOXA2.p3	NM_013888|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AK032207|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AF132906|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC013501|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC071211|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12
mm9_v1_chr10_+_127452219_127452252	0.408508	FOXA2.p3	J04620|Prim1|19075|DNA primase, p49 subunit	BC089544|Prim1|19075|DNA primase, p49 subunit	AK089063|Prim1|19075|DNA primase, p49 subunit	AK088557|Prim1|19075|DNA primase, p49 subunit	AK160831|Prim1|19075|DNA primase, p49 subunit
mm9_v1_chr3_-_101728226_101728375	0.407736	FOXA2.p3	AK090352|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK011679|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	BC094925|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	AK082482|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15	NM_001039371|Slc22a15|242126|solute carrier family 22 (organic anion/cation transporter), member 15
mm9_v1_chr14_-_65059694_65059876	0.404949	FOXA2.p3	AK002356|Msra|110265|methionine sulfoxide reductase A	AK009822|Msra|110265|methionine sulfoxide reductase A	AK030278|Msra|110265|methionine sulfoxide reductase A	BC014738|Msra|110265|methionine sulfoxide reductase A	AK049714|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chr13_-_54652983_54653158	0.404508	FOXA2.p3	AK216925|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK206564|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK215484|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK216083|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene	AK218676|4833439L19Rik|97820|RIKEN cDNA 4833439L19 gene
mm9_v1_chr4_+_48197852_48197907	0.404489	FOXA2.p3	AK018158|Stx17|67727|syntaxin 17
mm9_v1_chr7_-_11242322_11242322	0.402104	FOXA2.p3	NM_001110020|Gm6900|628596|predicted gene 6900
mm9_v1_chr13_+_23898861_23898926	0.397964	FOXA2.p3	AK050277|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	AK040717|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	NM_144836|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2	AK050184|Slc17a2|218103|solute carrier family 17 (sodium phosphate), member 2
mm9_v1_chr6_+_42236683_42236858	0.397179	FOXA2.p3	AK036735|Clcn1|12723|chloride channel 1	NM_013491|Clcn1|12723|chloride channel 1	BC114336|Clcn1|12723|chloride channel 1	AY046403|Clcn1|12723|chloride channel 1	AY046404|Clcn1|12723|chloride channel 1
mm9_v1_chr3_-_101640128_101640145	0.396425	FOXA2.p3	NM_172295|Mab21l3|242125|mab-21-like 3 (C. elegans)
mm9_v1_chr3_+_108456817_108456934	0.396195	FOXA2.p3	NM_145543|Clcc1|229725|chloride channel CLIC-like 1	AK169803|Clcc1|229725|chloride channel CLIC-like 1	NM_001177771|Clcc1|229725|chloride channel CLIC-like 1	AK090092|Clcc1|229725|chloride channel CLIC-like 1	AK143631|Clcc1|229725|chloride channel CLIC-like 1	AK171296|Clcc1|229725|chloride channel CLIC-like 1	NM_001177770|Clcc1|229725|chloride channel CLIC-like 1	AK179081|Clcc1|229725|chloride channel CLIC-like 1
mm9_v1_chr19_+_23241546_23241602	0.395774	FOXA2.p3	AK009928|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr3_-_115832278_115832299	0.395315	FOXA2.p3	CT010373|Vcam1|22329|vascular cell adhesion molecule 1	X67783|Vcam1|22329|vascular cell adhesion molecule 1
mm9_v1_chr6_+_56952293_56952348	0.393849	FOXA2.p3	BC125532|Vmn1r6|171193|vomeronasal 1 receptor 6	BC125534|Vmn1r6|171193|vomeronasal 1 receptor 6	NM_134175|Vmn1r6|171193|vomeronasal 1 receptor 6
mm9_v1_chr3_-_36470904_36470919	0.393442	FOXA2.p3	NM_009828|Ccna2|12428|cyclin A2	AK044924|Ccna2|12428|cyclin A2
mm9_v1_chr2_-_113688771_113688881	0.391047	FOXA2.p3	BC050875|Arhgap11a|228482|Rho GTPase activating protein 11A	AK129034|Arhgap11a|228482|Rho GTPase activating protein 11A	BC058105|Arhgap11a|228482|Rho GTPase activating protein 11A	NM_181416|Arhgap11a|228482|Rho GTPase activating protein 11A	AK162074|Arhgap11a|228482|Rho GTPase activating protein 11A
mm9_v1_chr1_+_166081951_166082088	0.390784	FOXA2.p3	AK137521|F5|14067|coagulation factor V	AK139240|F5|14067|coagulation factor V	AK137537|F5|14067|coagulation factor V	NM_007976|F5|14067|coagulation factor V	U52925|F5|14067|coagulation factor V
mm9_v1_chr6_+_29383152_29383347	0.388165	FOXA2.p3	NM_001081185|Flnc|68794|filamin C, gamma	AK051985|Flnc|68794|filamin C, gamma	BC151097|Flnc|68794|filamin C, gamma	BC158128|Flnc|68794|filamin C, gamma	BC172159|Flnc|68794|filamin C, gamma
mm9_v1_chr11_-_17847399_17847495	0.384955	FOXA2.p3	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr2_-_79969095_79969127	0.382156	FOXA2.p3	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr5_+_7960430_7960493	0.381881	FOXA2.p3	AK040760|Steap4|117167|STEAP family member 4	AJ319746|Steap4|117167|STEAP family member 4	BC006651|Steap4|117167|STEAP family member 4	NM_054098|Steap4|117167|STEAP family member 4	AY029778|Steap4|117167|STEAP family member 4
mm9_v1_chr19_-_28085534_28085655	0.375959	FOXA2.p3	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr9_-_44152242_44152310	0.375158	FOXA2.p3	AK153884|Hmbs|15288|hydroxymethylbilane synthase	BC003861|Hmbs|15288|hydroxymethylbilane synthase	AK167702|Hmbs|15288|hydroxymethylbilane synthase	AK151020|Hmbs|15288|hydroxymethylbilane synthase	NM_013551|Hmbs|15288|hydroxymethylbilane synthase
mm9_v1_chr6_-_87800966_87801099	0.374588	FOXA2.p3	AK078427|Cnbp|12785|cellular nucleic acid binding protein	L12693|Cnbp|12785|cellular nucleic acid binding protein	X63866|Cnbp|12785|cellular nucleic acid binding protein	Z11870|Cnbp|12785|cellular nucleic acid binding protein	Z11871|Cnbp|12785|cellular nucleic acid binding protein	BC058723|Cnbp|12785|cellular nucleic acid binding protein	U20326|Cnbp|12785|cellular nucleic acid binding protein	AK151528|Cnbp|12785|cellular nucleic acid binding protein	AK146593|Cnbp|12785|cellular nucleic acid binding protein	AK159810|Cnbp|12785|cellular nucleic acid binding protein	AK153414|Cnbp|12785|cellular nucleic acid binding protein	AK147157|Cnbp|12785|cellular nucleic acid binding protein	AK146367|Cnbp|12785|cellular nucleic acid binding protein	AK145444|Cnbp|12785|cellular nucleic acid binding protein	AK146224|Cnbp|12785|cellular nucleic acid binding protein	AK151961|Cnbp|12785|cellular nucleic acid binding protein	AK146301|Cnbp|12785|cellular nucleic acid binding protein	AK146344|Cnbp|12785|cellular nucleic acid binding protein	AK151317|Cnbp|12785|cellular nucleic acid binding protein	AK144740|Cnbp|12785|cellular nucleic acid binding protein	AK075760|Cnbp|12785|cellular nucleic acid binding protein	NM_001109745|Cnbp|12785|cellular nucleic acid binding protein	NM_001109746|Cnbp|12785|cellular nucleic acid binding protein	NM_013493|Cnbp|12785|cellular nucleic acid binding protein
mm9_v1_chr4_-_118162385_118162453	0.370537	FOXA2.p3	AK052413|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK051512|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	NM_011587|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm9_v1_chr3_+_64913564_64913693	0.369235	FOXA2.p3	BC014701|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	NM_010597|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	U65591|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr19_-_12870612_12870615	0.368108	FOXA2.p3	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr4_-_40704879_40704948	0.367743	FOXA2.p3	AK159635|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	AK003493|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	AK168813|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	AK011140|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	AK145982|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	NM_021535|Smu1|74255|smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
mm9_v1_chr6_+_8898613_8898694	0.36533	FOXA2.p3	AK083014|Nxph1|18231|neurexophilin 1
mm9_v1_chr7_-_54175214_54175352	0.362332	FOXA2.p3	AK185554|Tsg101|22088|tumor susceptibility gene 101	AK179695|Tsg101|22088|tumor susceptibility gene 101	AK014049|Tsg101|22088|tumor susceptibility gene 101	U52945|Tsg101|22088|tumor susceptibility gene 101	BC085308|Tsg101|22088|tumor susceptibility gene 101	AK146602|Tsg101|22088|tumor susceptibility gene 101	NM_021884|Tsg101|22088|tumor susceptibility gene 101	BC005424|Tsg101|22088|tumor susceptibility gene 101	AK146229|Tsg101|22088|tumor susceptibility gene 101	AK150369|Tsg101|22088|tumor susceptibility gene 101
mm9_v1_chr1_-_138130840_138130840	0.358887	FOXA2.p3	BC052416|5730559C18Rik|67313|RIKEN cDNA 5730559C18 gene	BC053100|5730559C18Rik|67313|RIKEN cDNA 5730559C18 gene	NM_028872|5730559C18Rik|67313|RIKEN cDNA 5730559C18 gene
mm9_v1_chr7_+_128084130_128084187	0.35766	FOXA2.p3	AK002918|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr8_-_47209499_47209499	0.354859	FOXA2.p3	NM_207213|Snx25|102141|sorting nexin 25
mm9_v1_chr1_+_98920975_98921101	0.354292	FOXA2.p3	
mm9_v1_chrX_-_6765768_6765839	0.351521	FOXA2.p3	AK142227|Clcn5|12728|chloride channel 5	AK145763|Clcn5|12728|chloride channel 5	BC036347|Clcn5|12728|chloride channel 5	AK052990|Clcn5|12728|chloride channel 5	AF134117|Clcn5|12728|chloride channel 5	NM_016691|Clcn5|12728|chloride channel 5
mm9_v1_chr1_+_181476534_181476659	0.351051	FOXA2.p3	AK146681|Cnst|226744|consortin, connexin sorting protein	AK089290|Cnst|226744|consortin, connexin sorting protein	AK036332|Cnst|226744|consortin, connexin sorting protein	AK040899|Cnst|226744|consortin, connexin sorting protein	AK040666|Cnst|226744|consortin, connexin sorting protein	AK087361|Cnst|226744|consortin, connexin sorting protein	BC054802|Cnst|226744|consortin, connexin sorting protein	NM_146105|Cnst|226744|consortin, connexin sorting protein
mm9_v1_chr15_-_58614642_58614788	0.350845	FOXA2.p3	AK011623|Tmem65|74868|transmembrane protein 65
mm9_v1_chr12_-_3426640_3426765	0.349731	FOXA2.p3	AK035515|1110002L01Rik|100043040|RIKEN cDNA 1110002L01 gene	AK031200|1110002L01Rik|100043040|RIKEN cDNA 1110002L01 gene
mm9_v1_chr11_+_26287083_26287211	0.348895	FOXA2.p3	AF513619|Fancl|67030|Fanconi anemia, complementation group L	NM_025923|Fancl|67030|Fanconi anemia, complementation group L	AK011520|Fancl|67030|Fanconi anemia, complementation group L	AK168538|Fancl|67030|Fanconi anemia, complementation group L	AK008605|Fancl|67030|Fanconi anemia, complementation group L	AK011903|Fancl|67030|Fanconi anemia, complementation group L	AK017431|Fancl|67030|Fanconi anemia, complementation group L	AK020981|Fancl|67030|Fanconi anemia, complementation group L	AK076017|Fancl|67030|Fanconi anemia, complementation group L	AK018018|Fancl|67030|Fanconi anemia, complementation group L	AK011752|Fancl|67030|Fanconi anemia, complementation group L	BC032876|Fancl|67030|Fanconi anemia, complementation group L
mm9_v1_chr7_-_34926107_34926132	0.348058	FOXA2.p3	AK218279|Uba2|50995|ubiquitin-like modifier activating enzyme 2	AK208593|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr4_+_6312276_6312305	0.347637	FOXA2.p3	AK178827|Sdcbp|53378|syndecan binding protein	AK213782|Sdcbp|53378|syndecan binding protein
mm9_v1_chr2_+_13504271_13504305	0.345811	FOXA2.p3	
mm9_v1_chr11_-_6333725_6333827	0.344683	FOXA2.p3	AK178770|H2afv|77605|H2A histone family, member V
mm9_v1_chr19_+_42164922_42164992	0.344128	FOXA2.p3	NM_145501|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	AK030725|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC110363|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha	BC089309|Pi4k2a|84095|phosphatidylinositol 4-kinase type 2 alpha
mm9_v1_chr4_-_34754469_34754554	0.3418	FOXA2.p3	AB221605|Zfp292|30046|zinc finger protein 292
mm9_v1_chr1_-_39608846_39608882	0.340988	FOXA2.p3	AK040602|Rnf149|67702|ring finger protein 149
mm9_v1_chr3_-_137794277_137794364	0.340505	FOXA2.p3	L47970|Mttp|17777|microsomal triglyceride transfer protein	BC012686|Mttp|17777|microsomal triglyceride transfer protein	AK146553|Mttp|17777|microsomal triglyceride transfer protein	NM_008642|Mttp|17777|microsomal triglyceride transfer protein
mm9_v1_chr16_-_34263272_34263285	0.34038	FOXA2.p3	AK158544|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr12_+_113917038_113917088	0.336959	FOXA2.p3	BC046387|Zbtb42|382639|zinc finger and BTB domain containing 42	NM_001100460|Zbtb42|382639|zinc finger and BTB domain containing 42
mm9_v1_chr11_+_72420705_72421072	0.33659	FOXA2.p3	NM_025985|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	BC065083|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK083029|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK012539|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK013902|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK167472|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK197264|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)
mm9_v1_chr9_-_96978102_96978110	0.335428	FOXA2.p3	AK087750|Slc25a36|192287|solute carrier family 25, member 36
mm9_v1_chr15_+_103333554_103333728	0.334605	FOXA2.p3	L01695|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent	NM_008800|Pde1b|18574|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm9_v1_chr19_-_38117813_38117907	0.334169	FOXA2.p3	BC150790|Myof|226101|myoferlin	AK086107|Myof|226101|myoferlin	AK173131|Myof|226101|myoferlin	AK087302|Myof|226101|myoferlin	AK031666|Myof|226101|myoferlin	AK087176|Myof|226101|myoferlin
mm9_v1_chr4_-_57929087_57929168	0.334034	FOXA2.p3	BC030929|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	AK085537|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	BC095953|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	NM_178727|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	AK035369|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene
mm9_v1_chr2_+_31829969_31830048	0.329684	FOXA2.p3	NM_172268|Nup214|227720|nucleoporin 214	AK150915|Nup214|227720|nucleoporin 214	AK122189|Nup214|227720|nucleoporin 214	BC039282|Nup214|227720|nucleoporin 214	AK166524|Nup214|227720|nucleoporin 214
mm9_v1_chr3_-_8964045_8964059	0.328819	FOXA2.p3	AY048852|Tpd52|21985|tumor protein D52	NM_001025261|Tpd52|21985|tumor protein D52	NM_001025262|Tpd52|21985|tumor protein D52
mm9_v1_chr18_+_4920537_4920702	0.328114	FOXA2.p3	AK021019|Svil|225115|supervillin	AK041925|Svil|225115|supervillin	BC099602|Svil|225115|supervillin
mm9_v1_chr5_-_122267654_122267839	0.328112	FOXA2.p3	AK210164|Sh2b3|16923|SH2B adaptor protein 3	AK212257|Sh2b3|16923|SH2B adaptor protein 3
mm9_v1_chr9_+_59526881_59526990	0.326563	FOXA2.p3	AK187622|Pkm2|18746|pyruvate kinase, muscle	AK189986|Pkm2|18746|pyruvate kinase, muscle	AK191750|Pkm2|18746|pyruvate kinase, muscle	AK193178|Pkm2|18746|pyruvate kinase, muscle	AK194857|Pkm2|18746|pyruvate kinase, muscle	AK195839|Pkm2|18746|pyruvate kinase, muscle	AK196046|Pkm2|18746|pyruvate kinase, muscle	AK196682|Pkm2|18746|pyruvate kinase, muscle	AK198278|Pkm2|18746|pyruvate kinase, muscle	AK198346|Pkm2|18746|pyruvate kinase, muscle	AK198579|Pkm2|18746|pyruvate kinase, muscle	AK199500|Pkm2|18746|pyruvate kinase, muscle	AK200354|Pkm2|18746|pyruvate kinase, muscle	AK201799|Pkm2|18746|pyruvate kinase, muscle	AK204154|Pkm2|18746|pyruvate kinase, muscle	AK219384|Pkm2|18746|pyruvate kinase, muscle	AK197608|Pkm2|18746|pyruvate kinase, muscle
mm9_v1_chr7_-_149276174_149276174	0.32546	FOXA2.p3	NM_008748|Dusp8|18218|dual specificity phosphatase 8	X95518|Dusp8|18218|dual specificity phosphatase 8
mm9_v1_chr7_+_29767872_29767891	0.324246	FOXA2.p3	NM_008279|Map4k1|26411|mitogen-activated protein kinase kinase kinase kinase 1	AK146273|Map4k1|26411|mitogen-activated protein kinase kinase kinase kinase 1	BC005433|Map4k1|26411|mitogen-activated protein kinase kinase kinase kinase 1
mm9_v1_chr3_+_146113449_146113466	0.322984	FOXA2.p3	AK008791|Ctbs|74245|chitobiase, di-N-acetyl-	DQ100384|Ctbs|74245|chitobiase, di-N-acetyl-	NM_028836|Ctbs|74245|chitobiase, di-N-acetyl-
mm9_v1_chr14_-_52780511_52780625	0.321853	FOXA2.p3	AK082901|Supt16h|114741|suppressor of Ty 16 homolog (S. cerevisiae)
mm9_v1_chr4_-_118162354_118162375	0.321725	FOXA2.p3	X71425|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	X73960|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC057004|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC060182|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK052192|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK161898|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	BC046452|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm9_v1_chr17_-_46290473_46290486	0.320656	FOXA2.p3	AK002377|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr6_+_134961654_134961711	0.320494	FOXA2.p3	
mm9_v1_chr16_-_84831712_84831743	0.320451	FOXA2.p3	U77128|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr4_+_135700717_135701086	0.319763	FOXA2.p3	AK014306|Id3|15903|inhibitor of DNA binding 3	AK201456|Id3|15903|inhibitor of DNA binding 3	AK192106|Id3|15903|inhibitor of DNA binding 3	AK192107|Id3|15903|inhibitor of DNA binding 3	AK192467|Id3|15903|inhibitor of DNA binding 3	AK199050|Id3|15903|inhibitor of DNA binding 3	AK200444|Id3|15903|inhibitor of DNA binding 3	AK202308|Id3|15903|inhibitor of DNA binding 3
mm9_v1_chr19_+_8986136_8986196	0.319024	FOXA2.p3	AK179326|Ganab|14376|alpha glucosidase 2 alpha neutral subunit
mm9_v1_chr10_-_87937335_87937390	0.318531	FOXA2.p3	AK080245|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr10_+_111409750_111409849	0.317167	FOXA2.p3	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr6_-_87622057_87622161	0.316193	FOXA2.p3	BC002179|Aplf|72103|aprataxin and PNKP like factor	AK078805|Aplf|72103|aprataxin and PNKP like factor	AK034191|Aplf|72103|aprataxin and PNKP like factor	AK008513|Aplf|72103|aprataxin and PNKP like factor	NM_001170489|Aplf|72103|aprataxin and PNKP like factor	NM_024251|Aplf|72103|aprataxin and PNKP like factor
mm9_v1_chr8_+_35870663_35870710	0.316003	FOXA2.p3	AK080964|Dusp4|319520|dual specificity phosphatase 4	NM_176933|Dusp4|319520|dual specificity phosphatase 4	AK053746|Dusp4|319520|dual specificity phosphatase 4	BC118941|Dusp4|319520|dual specificity phosphatase 4	BC118942|Dusp4|319520|dual specificity phosphatase 4
mm9_v1_chr12_+_111879117_111879122	0.314852	FOXA2.p3	AK122249|Dync1h1|13424|dynein cytoplasmic 1 heavy chain 1
mm9_v1_chr11_-_57981970_57982020	0.312581	FOXA2.p3	AK049216|Gemin5|216766|gem (nuclear organelle) associated protein 5	BC137802|Gemin5|216766|gem (nuclear organelle) associated protein 5	BC144921|Gemin5|216766|gem (nuclear organelle) associated protein 5	BC144922|Gemin5|216766|gem (nuclear organelle) associated protein 5	AK143536|Gemin5|216766|gem (nuclear organelle) associated protein 5	AK131137|Gemin5|216766|gem (nuclear organelle) associated protein 5
mm9_v1_chr15_-_88564636_88564674	0.312318	FOXA2.p3	NM_001033274|Brd1|223770|bromodomain containing 1	AK149714|Brd1|223770|bromodomain containing 1
mm9_v1_chr6_+_34813131_34813171	0.310661	FOXA2.p3	AK030532|Tmem140|68487|transmembrane protein 140	AK165621|Tmem140|68487|transmembrane protein 140	NM_197986|Tmem140|68487|transmembrane protein 140	BC023802|Tmem140|68487|transmembrane protein 140
mm9_v1_chr12_-_13227172_13227259	0.309766	FOXA2.p3	
mm9_v1_chr9_-_53344748_53344787	0.308937	FOXA2.p3	AK031702|Atm|11920|ataxia telangiectasia mutated homolog (human)	NM_007499|Atm|11920|ataxia telangiectasia mutated homolog (human)	AK139863|Atm|11920|ataxia telangiectasia mutated homolog (human)
mm9_v1_chr9_-_57400530_57400594	0.30843	FOXA2.p3	BC009068|Mpi|110119|mannose phosphate isomerase	BC051163|Mpi|110119|mannose phosphate isomerase	AF244360|Mpi|110119|mannose phosphate isomerase	AK217169|Mpi|110119|mannose phosphate isomerase	AK003896|Mpi|110119|mannose phosphate isomerase	AK132777|Mpi|110119|mannose phosphate isomerase	NM_025837|Mpi|110119|mannose phosphate isomerase
mm9_v1_chr1_+_192752368_192752423	0.307921	FOXA2.p3	AK158731|Angel2|52477|angel homolog 2 (Drosophila)	NM_021421|Angel2|52477|angel homolog 2 (Drosophila)	AK077039|Angel2|52477|angel homolog 2 (Drosophila)	AB041602|Angel2|52477|angel homolog 2 (Drosophila)	AK017545|Angel2|52477|angel homolog 2 (Drosophila)	BC024907|Angel2|52477|angel homolog 2 (Drosophila)
mm9_v1_chr3_-_137644466_137644512	0.307016	FOXA2.p3	AF163255|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK145745|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK146180|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AF186023|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK079794|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	AK169584|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	BC014759|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1	NM_011932|Dapp1|26377|dual adaptor for phosphotyrosine and 3-phosphoinositides 1
mm9_v1_chr10_-_115922360_115922443	0.307012	FOXA2.p3	AK019295|Cnot2|72068|CCR4-NOT transcription complex, subunit 2
mm9_v1_chr2_+_59192308_59192366	0.304307	FOXA2.p3	AK021168|Pkp4|227937|plakophilin 4
mm9_v1_chr15_-_93349866_93349962	0.304156	FOXA2.p3	BC117892|Prickle1|106042|prickle homolog 1 (Drosophila)	BC117893|Prickle1|106042|prickle homolog 1 (Drosophila)	AK147883|Prickle1|106042|prickle homolog 1 (Drosophila)
mm9_v1_chr17_-_21982590_21982733	0.304094	FOXA2.p3	AK148228|Zfp820|75424|zinc finger protein 820	AK011694|Zfp820|75424|zinc finger protein 820	NM_029281|Zfp820|75424|zinc finger protein 820	BC019219|Zfp820|75424|zinc finger protein 820
mm9_v1_chrX_-_72823561_72823573	0.302283	FOXA2.p3	BC050853|Rab39b|67790|RAB39B, member RAS oncogene family
mm9_v1_chr11_-_121084021_121084125	0.297077	FOXA2.p3	AK215969|BC017643|217370|cDNA sequence BC017643
mm9_v1_chr1_+_193801253_193801416	0.295816	FOXA2.p3	BC017602|Rd3|74023|retinal degeneration 3	NM_001177900|Rd3|74023|retinal degeneration 3	NM_023727|Rd3|74023|retinal degeneration 3	AK045045|Rd3|74023|retinal degeneration 3	AB030195|Rd3|74023|retinal degeneration 3	BC103778|Rd3|74023|retinal degeneration 3	AK014383|Rd3|74023|retinal degeneration 3	BC116937|Rd3|74023|retinal degeneration 3	BC116935|Rd3|74023|retinal degeneration 3
mm9_v1_chr5_-_109027924_109027935	0.294609	FOXA2.p3	AK034637|Gak|231580|cyclin G associated kinase
mm9_v1_chr19_-_41068625_41068698	0.294331	FOXA2.p3	AJ222814|Blnk|17060|B-cell linker	AK172016|Blnk|17060|B-cell linker	BC059785|Blnk|17060|B-cell linker	AK089704|Blnk|17060|B-cell linker	AF068182|Blnk|17060|B-cell linker	AB015290|Blnk|17060|B-cell linker
mm9_v1_chr19_-_5801011_5801112	0.293942	FOXA2.p3	AK008790|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)
mm9_v1_chr1_-_80272987_80273120	0.292494	FOXA2.p3	
mm9_v1_chr19_+_13009228_13009229	0.29	FOXA2.p3	BC133705|Olfr1449|258300|olfactory receptor 1449	NM_146303|Olfr1449|258300|olfactory receptor 1449
mm9_v1_chrX_+_57252630_57252647	0.289892	FOXA2.p3	AK149372|F9|14071|coagulation factor IX	NM_007979|F9|14071|coagulation factor IX	BC125617|F9|14071|coagulation factor IX	BC132393|F9|14071|coagulation factor IX
mm9_v1_chr1_+_24258538_24258666	0.289588	FOXA2.p3	AK017395|Col9a1|12839|collagen, type IX, alpha 1
mm9_v1_chr4_-_148511650_148511708	0.289488	FOXA2.p3	BC138926|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC138927|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK011725|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	BC048521|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK012995|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	AK013038|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1	NM_027263|Apitd1|69928|apoptosis-inducing, TAF9-like domain 1
mm9_v1_chr8_-_123606930_123607025	0.289004	FOXA2.p3	AK087264|1110050K14Rik|68790|RIKEN cDNA 1110050K14 gene
mm9_v1_chr11_+_78279202_78279242	0.287432	FOXA2.p3	NM_026740|Slc46a1|52466|solute carrier family 46, member 1	AK170505|Slc46a1|52466|solute carrier family 46, member 1	BC057976|Slc46a1|52466|solute carrier family 46, member 1	AK003278|Slc46a1|52466|solute carrier family 46, member 1	AK220201|Slc46a1|52466|solute carrier family 46, member 1
mm9_v1_chr6_+_3953944_3953986	0.287102	FOXA2.p3	BC039062|Gng11|66066|guanine nucleotide binding protein (G protein), gamma 11	NM_025331|Gng11|66066|guanine nucleotide binding protein (G protein), gamma 11
mm9_v1_chr8_+_119467267_119467410	0.285164	FOXA2.p3	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr5_+_145965427_145965536	0.285003	FOXA2.p3	NM_001167944|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	NM_016683|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	AK173086|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	AK019484|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5	BC060248|Zkscan5|22757|zinc finger with KRAB and SCAN domains 5
mm9_v1_chr4_-_102887744_102887832	0.284568	FOXA2.p3	AK140305|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm9_v1_chr4_-_6918703_6918738	0.284291	FOXA2.p3	AK051947|Tox|252838|thymocyte selection-associated high mobility group box
mm9_v1_chr5_-_33590505_33590587	0.284155	FOXA2.p3	
mm9_v1_chr8_-_36558514_36558598	0.283571	FOXA2.p3	AK165026|Eri1|67276|exoribonuclease 1	BC046412|Eri1|67276|exoribonuclease 1	AK172005|Eri1|67276|exoribonuclease 1	AK144223|Eri1|67276|exoribonuclease 1	AK014041|Eri1|67276|exoribonuclease 1	AK014410|Eri1|67276|exoribonuclease 1	NM_026067|Eri1|67276|exoribonuclease 1
mm9_v1_chr10_-_24647173_24647229	0.283557	FOXA2.p3	CT010173|Arg1|11846|arginase, liver
mm9_v1_chr1_+_45368568_45368573	0.283416	FOXA2.p3	M18933|Col3a1|12825|collagen, type III, alpha 1
mm9_v1_chr11_-_106860803_106860838	0.283335	FOXA2.p3	NM_010655|Kpna2|16647|karyopherin (importin) alpha 2
mm9_v1_chr11_-_102709293_102709399	0.282718	FOXA2.p3	
mm9_v1_chr5_-_135422795_135422804	0.281375	FOXA2.p3	AK162721|Cldn4|12740|claudin 4	AK145152|Cldn4|12740|claudin 4	NM_009903|Cldn4|12740|claudin 4
mm9_v1_chr16_+_33829715_33830005	0.280702	FOXA2.p3	AF022110|Itgb5|16419|integrin beta 5	NM_001145884|Itgb5|16419|integrin beta 5	NM_010580|Itgb5|16419|integrin beta 5	BC058246|Itgb5|16419|integrin beta 5	AK143532|Itgb5|16419|integrin beta 5	AK140251|Itgb5|16419|integrin beta 5	BC046280|Itgb5|16419|integrin beta 5	AF043256|Itgb5|16419|integrin beta 5	AF043257|Itgb5|16419|integrin beta 5	AK087476|Itgb5|16419|integrin beta 5
mm9_v1_chr8_+_11448095_11448135	0.278178	FOXA2.p3	AK075619|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chr11_-_102152310_102152512	0.276208	FOXA2.p3	AK218190|Atxn7l3|217218|ataxin 7-like 3	AK053165|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr13_-_55528131_55528182	0.275937	FOXA2.p3	BC037085|F12|58992|coagulation factor XII (Hageman factor)	X99571|F12|58992|coagulation factor XII (Hageman factor)	BC049867|F12|58992|coagulation factor XII (Hageman factor)	BC057921|F12|58992|coagulation factor XII (Hageman factor)	NM_021489|F12|58992|coagulation factor XII (Hageman factor)
mm9_v1_chr2_+_132672362_132672442	0.273933	FOXA2.p3	AK002408|Crls1|66586|cardiolipin synthase 1	AK018180|Crls1|66586|cardiolipin synthase 1	NM_001024385|Crls1|66586|cardiolipin synthase 1	BC048702|Crls1|66586|cardiolipin synthase 1	AK017718|Crls1|66586|cardiolipin synthase 1	BC086619|Crls1|66586|cardiolipin synthase 1
mm9_v1_chr9_+_32031833_32031859	0.271367	FOXA2.p3	NM_177379|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr7_+_132695758_132695826	0.269884	FOXA2.p3	AK088086|Il4ra|16190|interleukin 4 receptor, alpha	AK137827|Il4ra|16190|interleukin 4 receptor, alpha	AK149603|Il4ra|16190|interleukin 4 receptor, alpha	AK149717|Il4ra|16190|interleukin 4 receptor, alpha	AK150584|Il4ra|16190|interleukin 4 receptor, alpha	AK151998|Il4ra|16190|interleukin 4 receptor, alpha	AK159375|Il4ra|16190|interleukin 4 receptor, alpha	AK153186|Il4ra|16190|interleukin 4 receptor, alpha	AK160016|Il4ra|16190|interleukin 4 receptor, alpha	BC112911|Il4ra|16190|interleukin 4 receptor, alpha	NM_001008700|Il4ra|16190|interleukin 4 receptor, alpha	AK042342|Il4ra|16190|interleukin 4 receptor, alpha	M27959|Il4ra|16190|interleukin 4 receptor, alpha	M27960|Il4ra|16190|interleukin 4 receptor, alpha	M29854|Il4ra|16190|interleukin 4 receptor, alpha
mm9_v1_chr10_-_41023009_41023070	0.268401	FOXA2.p3	AK169881|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172341|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172130|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK155392|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC031887|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK041196|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC015295|Fig4|103199|FIG4 homolog (S. cerevisiae)	NM_133999|Fig4|103199|FIG4 homolog (S. cerevisiae)
mm9_v1_chr16_+_22951144_22951164	0.268087	FOXA2.p3	NM_053176|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr16_-_17842060_17842142	0.267186	FOXA2.p3	AK183515|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr15_+_91958558_91958558	0.265762	FOXA2.p3	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr1_-_132558108_132558210	0.265204	FOXA2.p3	AK136735|C4bp|12269|complement component 4 binding protein	AK162345|C4bp|12269|complement component 4 binding protein	AB094486|C4bp|12269|complement component 4 binding protein	AK149477|C4bp|12269|complement component 4 binding protein	BC012257|C4bp|12269|complement component 4 binding protein	AB094485|C4bp|12269|complement component 4 binding protein	NM_007576|C4bp|12269|complement component 4 binding protein	AK050344|C4bp|12269|complement component 4 binding protein	AK149468|C4bp|12269|complement component 4 binding protein	M17122|C4bp|12269|complement component 4 binding protein
mm9_v1_chr18_+_61265225_61265605	0.265114	FOXA2.p3	AK146069|Csf1r|12978|colony stimulating factor 1 receptor	NM_001037859|Csf1r|12978|colony stimulating factor 1 receptor	BC066863|Csf1r|12978|colony stimulating factor 1 receptor	BC050024|Csf1r|12978|colony stimulating factor 1 receptor	AK171241|Csf1r|12978|colony stimulating factor 1 receptor	AK156550|Csf1r|12978|colony stimulating factor 1 receptor	AK155565|Csf1r|12978|colony stimulating factor 1 receptor	AK155488|Csf1r|12978|colony stimulating factor 1 receptor	AK079247|Csf1r|12978|colony stimulating factor 1 receptor	AK155576|Csf1r|12978|colony stimulating factor 1 receptor	AK155858|Csf1r|12978|colony stimulating factor 1 receptor	AK154128|Csf1r|12978|colony stimulating factor 1 receptor	AK155640|Csf1r|12978|colony stimulating factor 1 receptor	AK155654|Csf1r|12978|colony stimulating factor 1 receptor	AK171386|Csf1r|12978|colony stimulating factor 1 receptor	AK004947|Csf1r|12978|colony stimulating factor 1 receptor	AK154556|Csf1r|12978|colony stimulating factor 1 receptor	AK154653|Csf1r|12978|colony stimulating factor 1 receptor	AK154699|Csf1r|12978|colony stimulating factor 1 receptor	AK076215|Csf1r|12978|colony stimulating factor 1 receptor	AK143545|Csf1r|12978|colony stimulating factor 1 receptor	X06368|Csf1r|12978|colony stimulating factor 1 receptor	X68932|Csf1r|12978|colony stimulating factor 1 receptor	AK080326|Csf1r|12978|colony stimulating factor 1 receptor	BC043054|Csf1r|12978|colony stimulating factor 1 receptor	AK089498|Csf1r|12978|colony stimulating factor 1 receptor	AK171543|Csf1r|12978|colony stimulating factor 1 receptor	BC036343|Csf1r|12978|colony stimulating factor 1 receptor	AK041299|Csf1r|12978|colony stimulating factor 1 receptor
mm9_v1_chr17_+_34400152_34400289	0.263975	FOXA2.p3	NM_207105|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK077436|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC008168|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK170370|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171211|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK155573|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171281|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK172409|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK156899|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171005|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171290|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171298|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC010322|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC057998|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M15848|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF065913|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF119251|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF119252|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AY452202|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13537|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13538|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13539|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13540|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M66213|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF065912|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13541|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1
mm9_v1_chr4_-_42993205_42993326	0.262571	FOXA2.p3	AK217741|Vcp|269523|valosin containing protein	AK209181|Vcp|269523|valosin containing protein
mm9_v1_chr5_+_65361309_65361366	0.261433	FOXA2.p3	AM162548|Fam114a1|68303|family with sequence similarity 114, member A1	BC110359|Fam114a1|68303|family with sequence similarity 114, member A1	AK030360|Fam114a1|68303|family with sequence similarity 114, member A1	NM_026667|Fam114a1|68303|family with sequence similarity 114, member A1	AK014725|Fam114a1|68303|family with sequence similarity 114, member A1	BC027235|Fam114a1|68303|family with sequence similarity 114, member A1	AK020262|Fam114a1|68303|family with sequence similarity 114, member A1	AK007950|Fam114a1|68303|family with sequence similarity 114, member A1	AK017336|Fam114a1|68303|family with sequence similarity 114, member A1	BC089499|Fam114a1|68303|family with sequence similarity 114, member A1
mm9_v1_chr2_+_145685882_145685886	0.261325	FOXA2.p3	AK163047|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr5_+_93238413_93238466	0.260337	FOXA2.p3	NM_001077595|Shroom3|27428|shroom family member 3	AK164918|Shroom3|27428|shroom family member 3	AF199422|Shroom3|27428|shroom family member 3
mm9_v1_chrX_-_162948399_162948409	0.258391	FOXA2.p3	AK140929|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	BC067008|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing	NM_001007577|Tceanc|245695|transcription elongation factor A (SII) N-terminal and central domain containing
mm9_v1_chr9_-_15105965_15105999	0.257057	FOXA2.p3	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr7_-_149563275_149563363	0.2568	FOXA2.p3	AK205399|Ctsd|13033|cathepsin D	AK213803|Ctsd|13033|cathepsin D
mm9_v1_chr8_+_86247034_86247066	0.256357	FOXA2.p3	
mm9_v1_chr15_-_8049200_8049210	0.254564	FOXA2.p3	AK014750|Wdr70|545085|WD repeat domain 70	BC061236|Wdr70|545085|WD repeat domain 70	NM_001081402|Wdr70|545085|WD repeat domain 70
mm9_v1_chr2_+_109532592_109532697	0.254436	FOXA2.p3	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr11_+_77845840_77845855	0.254177	FOXA2.p3	AK011939|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	BC115881|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13	AK046465|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr12_-_104681842_104681891	0.253917	FOXA2.p3	AY090098|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	AK040279|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	AK160503|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	BC086889|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	BC100588|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	NM_029803|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A
mm9_v1_chr4_+_122731563_122731731	0.252905	FOXA2.p3	AK188355|Trit1|66966|tRNA isopentenyltransferase 1	AK219389|Trit1|66966|tRNA isopentenyltransferase 1	AK189511|Trit1|66966|tRNA isopentenyltransferase 1
mm9_v1_chr2_+_17986187_17986431	0.252306	FOXA2.p3	AK154320|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	BC055298|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AK147388|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	BC069988|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AF010135|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AK220504|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	AK045042|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr6_+_129483238_129483284	0.251837	FOXA2.p3	BC004602|Gabarapl1|57436|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm9_v1_chr19_-_40525876_40525887	0.251138	FOXA2.p3	AF078666|Sorbs1|20411|sorbin and SH3 domain containing 1	AF078667|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034962|Sorbs1|20411|sorbin and SH3 domain containing 1	NM_001034963|Sorbs1|20411|sorbin and SH3 domain containing 1
mm9_v1_chr7_+_134123446_134123464	0.249811	FOXA2.p3	
mm9_v1_chr11_+_78312784_78312851	0.248984	FOXA2.p3	X63003|Vtn|22370|vitronectin	BC012690|Vtn|22370|vitronectin	AF440693|Vtn|22370|vitronectin	M77123|Vtn|22370|vitronectin
mm9_v1_chr11_-_57982024_57982049	0.248793	FOXA2.p3	NM_001166669|Gemin5|216766|gem (nuclear organelle) associated protein 5	NM_001166670|Gemin5|216766|gem (nuclear organelle) associated protein 5	NM_001166671|Gemin5|216766|gem (nuclear organelle) associated protein 5	NM_172558|Gemin5|216766|gem (nuclear organelle) associated protein 5
mm9_v1_chr6_+_135015679_135015703	0.247631	FOXA2.p3	NM_181444|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A	BC039217|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A
mm9_v1_chr11_-_110112926_110113089	0.247233	FOXA2.p3	BC132417|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	BC132419|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK053384|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AF498361|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK042934|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK018242|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	AK040652|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	NM_001166556|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	NM_001166557|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6	NM_147218|Abca6|76184|ATP-binding cassette, sub-family A (ABC1), member 6
mm9_v1_chr12_+_111724001_111724119	0.24698	FOXA2.p3	AB055635|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AB055636|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	U37353|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr8_-_35153699_35153753	0.245235	FOXA2.p3	
mm9_v1_chr11_-_6171453_6171670	0.244587	FOXA2.p3	AK003613|Tmed4|103694|transmembrane emp24 protein transport domain containing 4
mm9_v1_chr11_-_116711485_116711487	0.244283	FOXA2.p3	
mm9_v1_chr1_-_175696989_175697156	0.242383	FOXA2.p3	AK150522|Ifi204|15951|interferon activated gene 204	NM_008329|Ifi204|15951|interferon activated gene 204	AK138785|Ifi204|15951|interferon activated gene 204
mm9_v1_chr7_+_107685583_107685597	0.241704	FOXA2.p3	
mm9_v1_chr2_-_152223287_152223490	0.241654	FOXA2.p3	U70442|Sox12|20667|SRY-box containing gene 12	Z18961|Sox12|20667|SRY-box containing gene 12
mm9_v1_chr16_-_56690646_56690662	0.241128	FOXA2.p3	
mm9_v1_chr9_+_107483009_107483202	0.240223	FOXA2.p3	AK137391|Nat6|56441|N-acetyltransferase 6	AF172275|Nat6|56441|N-acetyltransferase 6
mm9_v1_chr7_-_29185621_29185738	0.239964	FOXA2.p3	
mm9_v1_chr2_+_110561733_110561771	0.239747	FOXA2.p3	AY198336|Muc15|269328|mucin 15	AK052840|Muc15|269328|mucin 15	AK142590|Muc15|269328|mucin 15	NM_172979|Muc15|269328|mucin 15	BC094506|Muc15|269328|mucin 15	BC116796|Muc15|269328|mucin 15	BC119176|Muc15|269328|mucin 15
mm9_v1_chr2_+_71892681_71892690	0.239064	FOXA2.p3	AB445011|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr19_+_13439119_13439119	0.237648	FOXA2.p3	NM_146691|Olfr1467|258686|olfactory receptor 1467
mm9_v1_chr18_+_78017198_78017354	0.23556	FOXA2.p3	
mm9_v1_chr19_-_4287408_4287579	0.234771	FOXA2.p3	AK153543|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr18_-_9995729_9995838	0.234143	FOXA2.p3	AK206781|Usp14|59025|ubiquitin specific peptidase 14	AK209109|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr2_-_28438389_28438521	0.233712	FOXA2.p3	AK045419|Gtf3c5|70239|general transcription factor IIIC, polypeptide 5
mm9_v1_chr1_-_128727208_128727208	0.232851	FOXA2.p3	NM_001081756|Nckap5|210356|NCK-associated protein 5	NM_176957|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr6_-_83267540_83267619	0.23267	FOXA2.p3	J04627|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK076801|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK076019|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK159680|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK166262|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	BC019511|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK152249|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	AK165840|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	NM_008638|Mthfd2|17768|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase
mm9_v1_chr11_-_86539846_86539984	0.232409	FOXA2.p3	AK049578|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr11_+_78115087_78115102	0.230099	FOXA2.p3	NM_017407|Spag5|54141|sperm associated antigen 5	AK076619|Spag5|54141|sperm associated antigen 5
mm9_v1_chr11_+_88835235_88835270	0.228358	FOXA2.p3	NM_016706|Coil|12812|coilin	AK146366|Coil|12812|coilin	AF208663|Coil|12812|coilin
mm9_v1_chr10_+_77060408_77060810	0.228175	FOXA2.p3	AK177209|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK190939|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK200019|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK204685|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK217718|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK190184|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK216585|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK191037|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK192116|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK202715|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK209759|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK211153|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK216317|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein
mm9_v1_chr8_-_42502362_42502487	0.228161	FOXA2.p3	AK079229|Frg1|14300|FSHD region gene 1	AK077107|Frg1|14300|FSHD region gene 1	BC002027|Frg1|14300|FSHD region gene 1	U62105|Frg1|14300|FSHD region gene 1	NM_013522|Frg1|14300|FSHD region gene 1
mm9_v1_chr11_-_102546084_102546176	0.227836	FOXA2.p3	
mm9_v1_chr11_-_6171302_6171325	0.226712	FOXA2.p3	AK184055|Tmed4|103694|transmembrane emp24 protein transport domain containing 4
mm9_v1_chr19_-_6932673_6932702	0.225531	FOXA2.p3	BC151001|Ccdc88b|78317|coiled-coil domain containing 88B	BC151009|Ccdc88b|78317|coiled-coil domain containing 88B	BC157946|Ccdc88b|78317|coiled-coil domain containing 88B	NM_001081291|Ccdc88b|78317|coiled-coil domain containing 88B
mm9_v1_chr13_+_58258986_58259046	0.224392	FOXA2.p3	AK040588|5133401N09Rik|75731|RIKEN cDNA 5133401N09 gene	NM_001048060|5133401N09Rik|75731|RIKEN cDNA 5133401N09 gene	NM_198004|5133401N09Rik|75731|RIKEN cDNA 5133401N09 gene	AK045763|5133401N09Rik|75731|RIKEN cDNA 5133401N09 gene	AK017224|5133401N09Rik|75731|RIKEN cDNA 5133401N09 gene	AK032811|5133401N09Rik|75731|RIKEN cDNA 5133401N09 gene	BC026742|5133401N09Rik|75731|RIKEN cDNA 5133401N09 gene
mm9_v1_chr15_+_99984826_99984839	0.221558	FOXA2.p3	AK030064|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	NM_172819|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137857|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	BC137858|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr11_-_43561446_43561512	0.22112	FOXA2.p3	AK019021|Ttc1|66827|tetratricopeptide repeat domain 1	BC010236|Ttc1|66827|tetratricopeptide repeat domain 1	NM_133795|Ttc1|66827|tetratricopeptide repeat domain 1	AK166431|Ttc1|66827|tetratricopeptide repeat domain 1	AK170032|Ttc1|66827|tetratricopeptide repeat domain 1	AK170230|Ttc1|66827|tetratricopeptide repeat domain 1	AK077715|Ttc1|66827|tetratricopeptide repeat domain 1
mm9_v1_chr2_-_91284827_91284865	0.220788	FOXA2.p3	AK018339|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	BC049648|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene
mm9_v1_chr14_+_25309895_25309936	0.218807	FOXA2.p3	NM_011297|Rps24|20088|ribosomal protein S24	NM_207634|Rps24|20088|ribosomal protein S24	NM_207635|Rps24|20088|ribosomal protein S24
mm9_v1_chr7_+_59134514_59134648	0.217968	FOXA2.p3	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr5_-_137969610_137969651	0.216073	FOXA2.p3	
mm9_v1_chr10_+_74674793_74674887	0.21607	FOXA2.p3	AK035500|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like	AY884297|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like	NM_153406|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like	AK052716|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like	AK172502|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like
mm9_v1_chr3_-_29912113_29912128	0.21352	FOXA2.p3	AK085548|Mecom|14013|MDS1 and EVI1 complex locus	NM_007963|Mecom|14013|MDS1 and EVI1 complex locus
mm9_v1_chr5_-_37187931_37187942	0.210829	FOXA2.p3	AK018675|Mrfap1|67568|Morf4 family associated protein 1	AK020049|Mrfap1|67568|Morf4 family associated protein 1	AK170789|Mrfap1|67568|Morf4 family associated protein 1
mm9_v1_chr16_-_63863905_63864000	0.210498	FOXA2.p3	BC138641|Epha3|13837|Eph receptor A3	BC138643|Epha3|13837|Eph receptor A3	BC145349|Epha3|13837|Eph receptor A3	AK132335|Epha3|13837|Eph receptor A3	BC060164|Epha3|13837|Eph receptor A3	M68513|Epha3|13837|Eph receptor A3	M68515|Epha3|13837|Eph receptor A3	AK084921|Epha3|13837|Eph receptor A3	AK041935|Epha3|13837|Eph receptor A3	AK045219|Epha3|13837|Eph receptor A3	NM_010140|Epha3|13837|Eph receptor A3	BC093483|Epha3|13837|Eph receptor A3	AK089119|Epha3|13837|Eph receptor A3
mm9_v1_chrY_-_582062_582201	0.209612	FOXA2.p3	AK162410|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK220463|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK155922|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AF057367|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	BC053061|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK043154|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	NM_009484|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142344|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	AK142512|Uty|22290|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm9_v1_chr7_-_19751441_19751475	0.207749	FOXA2.p3	AK050472|Gipr|381853|gastric inhibitory polypeptide receptor	AK146552|Gipr|381853|gastric inhibitory polypeptide receptor	NM_001080815|Gipr|381853|gastric inhibitory polypeptide receptor
mm9_v1_chr18_-_40378889_40378990	0.206945	FOXA2.p3	AK151425|Yipf5|67180|Yip1 domain family, member 5	AK151461|Yipf5|67180|Yip1 domain family, member 5	BC003317|Yipf5|67180|Yip1 domain family, member 5	AK160004|Yipf5|67180|Yip1 domain family, member 5	AK167953|Yipf5|67180|Yip1 domain family, member 5	AK172133|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr4_-_11118342_11118420	0.206942	FOXA2.p3	AK080292|A630034I12Rik|329790|RIKEN cDNA A630034I12 gene	AK169448|A630034I12Rik|329790|RIKEN cDNA A630034I12 gene
mm9_v1_chr10_+_42941291_42941329	0.20597	FOXA2.p3	AK165732|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	NM_001168289|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	NM_027772|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2	AK017329|Pdss2|71365|prenyl (solanesyl) diphosphate synthase, subunit 2
mm9_v1_chr14_-_11285927_11285966	0.203505	FOXA2.p3	BC012662|Fhit|14198|fragile histidine triad gene
mm9_v1_chr4_-_110024513_110024515	0.202688	FOXA2.p3	AF041341|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001163397|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chr4_-_140674616_140674640	0.201548	FOXA2.p3	
mm9_v1_chr2_+_25203630_25203665	0.19916	FOXA2.p3	BC025500|Man1b1|227619|mannosidase, alpha, class 1B, member 1
mm9_v1_chr14_-_66627993_66628046	0.198637	FOXA2.p3	BC019856|Gulo|268756|gulonolactone (L-) oxidase	BC028822|Gulo|268756|gulonolactone (L-) oxidase	BC028828|Gulo|268756|gulonolactone (L-) oxidase	AK167460|Gulo|268756|gulonolactone (L-) oxidase	AK077740|Gulo|268756|gulonolactone (L-) oxidase	NM_178747|Gulo|268756|gulonolactone (L-) oxidase
mm9_v1_chr2_+_17976897_17976897	0.198093	FOXA2.p3	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr1_-_95316709_95316785	0.197761	FOXA2.p3	
mm9_v1_chr8_+_73054891_73055139	0.197565	FOXA2.p3	AK177460|Fkbp8|14232|FK506 binding protein 8	AK184741|Fkbp8|14232|FK506 binding protein 8	AK182349|Fkbp8|14232|FK506 binding protein 8	AK197324|Fkbp8|14232|FK506 binding protein 8	AK209719|Fkbp8|14232|FK506 binding protein 8	AK212094|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr16_+_91677879_91677930	0.197062	FOXA2.p3	BC029990|Son|20658|Son DNA binding protein
mm9_v1_chr3_-_29911982_29912077	0.196036	FOXA2.p3	AK051098|Mecom|14013|MDS1 and EVI1 complex locus	BC076620|Mecom|14013|MDS1 and EVI1 complex locus
mm9_v1_chr6_-_120745390_120745474	0.195352	FOXA2.p3	
mm9_v1_chr2_-_151543541_151543662	0.193499	FOXA2.p3	AK195843|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	AK216758|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1
mm9_v1_chr5_-_135028197_135028344	0.191738	FOXA2.p3	BC039162|Clip2|269713|CAP-GLY domain containing linker protein 2	BC053048|Clip2|269713|CAP-GLY domain containing linker protein 2	NM_001039162|Clip2|269713|CAP-GLY domain containing linker protein 2	NM_009990|Clip2|269713|CAP-GLY domain containing linker protein 2
mm9_v1_chr5_-_141096711_141096848	0.191506	FOXA2.p3	AK019322|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr8_+_46035561_46035561	0.191182	FOXA2.p3	AJ250768|Fat1|14107|FAT tumor suppressor homolog 1 (Drosophila)	NM_001081286|Fat1|14107|FAT tumor suppressor homolog 1 (Drosophila)
mm9_v1_chr11_-_17853850_17853896	0.191161	FOXA2.p3	BC028916|Etaa1|68145|Ewing's tumor-associated antigen 1	AK034138|Etaa1|68145|Ewing's tumor-associated antigen 1	AK019965|Etaa1|68145|Ewing's tumor-associated antigen 1	NM_026576|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr4_-_116136779_116136820	0.19037	FOXA2.p3	NM_001042743|Mast2|17776|microtubule associated serine/threonine kinase 2	NM_008641|Mast2|17776|microtubule associated serine/threonine kinase 2
mm9_v1_chr6_-_119303490_119303640	0.190282	FOXA2.p3	AK003228|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr11_-_120442851_120442887	0.189752	FOXA2.p3	BC086755|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	BC004732|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK156819|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK172140|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr15_+_5135524_5135559	0.189411	FOXA2.p3	AK050426|Ttc33|67515|tetratricopeptide repeat domain 33	AK010758|Ttc33|67515|tetratricopeptide repeat domain 33	BC061018|Ttc33|67515|tetratricopeptide repeat domain 33	NM_026213|Ttc33|67515|tetratricopeptide repeat domain 33
mm9_v1_chr10_+_53057491_53057558	0.188463	FOXA2.p3	NM_001141927|Pln|18821|phospholamban	NM_023129|Pln|18821|phospholamban	BC061097|Pln|18821|phospholamban	AK002622|Pln|18821|phospholamban	AK040718|Pln|18821|phospholamban	S46792|Pln|18821|phospholamban	AK142708|Pln|18821|phospholamban	AK052199|Pln|18821|phospholamban
mm9_v1_chr3_+_121160714_121160815	0.188105	FOXA2.p3	AK181356|Cnn3|71994|calponin 3, acidic
mm9_v1_chr18_-_61008391_61008636	0.187967	FOXA2.p3	U81030|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	AF001794|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC057342|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC060105|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC046608|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC052669|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	AK089518|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	BC021514|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	NM_001198984|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog	NM_011552|Tcof1|21453|Treacher Collins Franceschetti syndrome 1, homolog
mm9_v1_chr15_-_76476688_76476767	0.18607	FOXA2.p3	AK028994|Cyhr1|54151|cysteine and histidine rich 1
mm9_v1_chr1_-_181476342_181476404	0.186025	FOXA2.p3	BC138836|Tfb2m|15278|transcription factor B2, mitochondrial	BC138837|Tfb2m|15278|transcription factor B2, mitochondrial	AK167930|Tfb2m|15278|transcription factor B2, mitochondrial	M74555|Tfb2m|15278|transcription factor B2, mitochondrial	AK090106|Tfb2m|15278|transcription factor B2, mitochondrial	AK168970|Tfb2m|15278|transcription factor B2, mitochondrial	AK169138|Tfb2m|15278|transcription factor B2, mitochondrial	AK166717|Tfb2m|15278|transcription factor B2, mitochondrial	AK146563|Tfb2m|15278|transcription factor B2, mitochondrial	NM_008249|Tfb2m|15278|transcription factor B2, mitochondrial
mm9_v1_chr12_+_66176588_66176613	0.185382	FOXA2.p3	AK039944|Fancm|104806|Fanconi anemia, complementation group M	AK084697|Fancm|104806|Fanconi anemia, complementation group M	AK086395|Fancm|104806|Fanconi anemia, complementation group M	AK050306|Fancm|104806|Fanconi anemia, complementation group M	NM_178912|Fancm|104806|Fanconi anemia, complementation group M	AK053715|Fancm|104806|Fanconi anemia, complementation group M	BC150785|Fancm|104806|Fanconi anemia, complementation group M	AK173211|Fancm|104806|Fanconi anemia, complementation group M
mm9_v1_chr4_+_151653120_151653375	0.184031	FOXA2.p3	BC037650|Gpr153|100129|G protein-coupled receptor 153	BC029098|Gpr153|100129|G protein-coupled receptor 153	AY255610|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr17_+_46298019_46298034	0.184014	FOXA2.p3	BC049089|Gtpbp2|56055|GTP binding protein 2	BC051958|Gtpbp2|56055|GTP binding protein 2	AK146415|Gtpbp2|56055|GTP binding protein 2
mm9_v1_chr6_+_88052091_88052141	0.183602	FOXA2.p3	
mm9_v1_chr5_+_65221116_65221144	0.183369	FOXA2.p3	AK036932|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr7_+_87377748_87377824	0.183084	FOXA2.p3	AK166345|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK143704|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK085577|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK086166|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	NM_178752|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	AK084531|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene	BC037479|D330012F22Rik|269952|RIKEN cDNA D330012F22 gene
mm9_v1_chr1_+_59543450_59543567	0.182331	FOXA2.p3	
mm9_v1_chr3_-_157689714_157689821	0.180946	FOXA2.p3	AK218604|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183815|Srsf11|69207|serine/arginine-rich splicing factor 11	AK183987|Srsf11|69207|serine/arginine-rich splicing factor 11	AK212592|Srsf11|69207|serine/arginine-rich splicing factor 11	AK215844|Srsf11|69207|serine/arginine-rich splicing factor 11	AK216204|Srsf11|69207|serine/arginine-rich splicing factor 11	AK218039|Srsf11|69207|serine/arginine-rich splicing factor 11
mm9_v1_chr9_+_108382255_108382288	0.180214	FOXA2.p3	BC026051|Lamb2|16779|laminin, beta 2
mm9_v1_chr1_+_174065263_174065366	0.179663	FOXA2.p3	AK218140|Pex19|19298|peroxisomal biogenesis factor 19
mm9_v1_chr10_+_89207730_89207982	0.178653	FOXA2.p3	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr5_-_130363128_130363198	0.177805	FOXA2.p3	BC083126|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	BC084682|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	BC069887|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	BC037682|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	BC042717|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	BC082287|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	AK145492|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	AK162133|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	AK160762|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	AK160779|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	AK166796|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	AK167593|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	AK003399|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2
mm9_v1_chr14_+_26484518_26484659	0.176886	FOXA2.p3	AK132106|Gm10397|100038401|predicted gene 10397
mm9_v1_chr10_-_75905451_75905555	0.176463	FOXA2.p3	BC100380|Pcnt|18541|pericentrin (kendrin)	BC034865|Pcnt|18541|pericentrin (kendrin)	BC085244|Pcnt|18541|pericentrin (kendrin)	AK145315|Pcnt|18541|pericentrin (kendrin)	AB207233|Pcnt|18541|pericentrin (kendrin)
mm9_v1_chr14_+_102239673_102239864	0.175589	FOXA2.p3	AK053129|Lmo7|380928|LIM domain only 7	AK143133|Lmo7|380928|LIM domain only 7	AK129231|Lmo7|380928|LIM domain only 7
mm9_v1_chr11_+_98547296_98547343	0.175582	FOXA2.p3	AK180273|Psmd3|22123|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3
mm9_v1_chr1_+_51346198_51346215	0.173827	FOXA2.p3	AK217731|Sdpr|20324|serum deprivation response	AK220044|Sdpr|20324|serum deprivation response
mm9_v1_chr15_+_25870456_25870763	0.173384	FOXA2.p3	AK167327|Fam134b|66270|family with sequence similarity 134, member B	AK146972|Fam134b|66270|family with sequence similarity 134, member B	BC019494|Fam134b|66270|family with sequence similarity 134, member B	NM_025459|Fam134b|66270|family with sequence similarity 134, member B	BC054415|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr8_-_90886051_90886133	0.17157	FOXA2.p3	AF084259|Brd7|26992|bromodomain containing 7	AK142758|Brd7|26992|bromodomain containing 7	NM_012047|Brd7|26992|bromodomain containing 7	AK138934|Brd7|26992|bromodomain containing 7
mm9_v1_chr7_+_52965052_52965376	0.1711	FOXA2.p3	AK192990|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr6_+_17699145_17699592	0.170635	FOXA2.p3	AK079107|St7|64213|suppression of tumorigenicity 7	AK132103|St7|64213|suppression of tumorigenicity 7	AK151550|St7|64213|suppression of tumorigenicity 7	NM_001083315|St7|64213|suppression of tumorigenicity 7	NM_022332|St7|64213|suppression of tumorigenicity 7	BC108418|St7|64213|suppression of tumorigenicity 7	AF234884|St7|64213|suppression of tumorigenicity 7	AF234885|St7|64213|suppression of tumorigenicity 7	AY007794|St7|64213|suppression of tumorigenicity 7	AY007795|St7|64213|suppression of tumorigenicity 7	AK036248|St7|64213|suppression of tumorigenicity 7	BC060630|St7|64213|suppression of tumorigenicity 7	BC051429|St7|64213|suppression of tumorigenicity 7	AY551821|St7|64213|suppression of tumorigenicity 7	AY551822|St7|64213|suppression of tumorigenicity 7	CT010245|St7|64213|suppression of tumorigenicity 7
mm9_v1_chr3_-_53267127_53267244	0.169052	FOXA2.p3	AK133986|Nhlrc3|212114|NHL repeat containing 3	BC087903|Nhlrc3|212114|NHL repeat containing 3	BC107356|Nhlrc3|212114|NHL repeat containing 3	AK029465|Nhlrc3|212114|NHL repeat containing 3	AK033167|Nhlrc3|212114|NHL repeat containing 3	NM_172501|Nhlrc3|212114|NHL repeat containing 3	AK162824|Nhlrc3|212114|NHL repeat containing 3	AK220477|Nhlrc3|212114|NHL repeat containing 3
mm9_v1_chr11_-_70223517_70223527	0.168789	FOXA2.p3	BC090620|Pelp1|75273|proline, glutamic acid and leucine rich protein 1
mm9_v1_chr2_-_7317513_7317626	0.168475	FOXA2.p3	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr3_+_62142698_62142868	0.167855	FOXA2.p3	NM_001081295|Arhgef26|622434|Rho guanine nucleotide exchange factor (GEF) 26
mm9_v1_chr19_+_55700193_55700329	0.167451	FOXA2.p3	
mm9_v1_chr11_+_87551052_87551101	0.167435	FOXA2.p3	AK146235|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK168229|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK167941|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	AK002990|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC061174|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	NM_009296|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC024391|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	BC087923|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)	U43154|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)
mm9_v1_chr10_-_114799212_114799324	0.167322	FOXA2.p3	AK136778|Tmem19|67226|transmembrane protein 19	AK170143|Tmem19|67226|transmembrane protein 19	AK171087|Tmem19|67226|transmembrane protein 19	AK018383|Tmem19|67226|transmembrane protein 19	AK155275|Tmem19|67226|transmembrane protein 19	AK042426|Tmem19|67226|transmembrane protein 19	AK079735|Tmem19|67226|transmembrane protein 19	BC016895|Tmem19|67226|transmembrane protein 19	AK036228|Tmem19|67226|transmembrane protein 19	AK138931|Tmem19|67226|transmembrane protein 19	NM_133683|Tmem19|67226|transmembrane protein 19	AK034298|Tmem19|67226|transmembrane protein 19
mm9_v1_chr3_-_27610155_27610257	0.167307	FOXA2.p3	AK045099|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr13_+_40955500_40955723	0.165286	FOXA2.p3	AK077598|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	NM_023887|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AK156328|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	AY435148|Gcnt2|14538|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm9_v1_chr16_-_85862579_85862641	0.163257	FOXA2.p3	AK046558|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	AK164560|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr1_-_168058009_168058054	0.163079	FOXA2.p3	BC117936|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK142263|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001033344|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001160049|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK048603|Dusp27|240892|dual specificity phosphatase 27 (putative)
mm9_v1_chr3_+_60276971_60277044	0.162739	FOXA2.p3	AK153827|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr8_-_73046985_73047078	0.162493	FOXA2.p3	AK155003|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK013135|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	AK002695|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC048938|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	BC053944|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene	NM_029366|2810422J05Rik|75620|RIKEN cDNA 2810422J05 gene
mm9_v1_chr1_+_157005804_157006022	0.161252	FOXA2.p3	NM_021433|Stx6|58244|syntaxin 6	AK018167|Stx6|58244|syntaxin 6	AK031673|Stx6|58244|syntaxin 6	AK159392|Stx6|58244|syntaxin 6	AK019106|Stx6|58244|syntaxin 6	AK044905|Stx6|58244|syntaxin 6	AK049124|Stx6|58244|syntaxin 6	AK009690|Stx6|58244|syntaxin 6	AK151549|Stx6|58244|syntaxin 6	BC029205|Stx6|58244|syntaxin 6	AF237814|Stx6|58244|syntaxin 6
mm9_v1_chr4_+_33295965_33295965	0.16113	FOXA2.p3	AK046869|Srsf13b|272009|serine/arginine-rich splicing factor 13B	NM_177774|Srsf13b|272009|serine/arginine-rich splicing factor 13B
mm9_v1_chr2_+_24935818_24936028	0.157308	FOXA2.p3	BC031143|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	NM_028093|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AY364442|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8	AK008590|Entpd8|72090|ectonucleoside triphosphate diphosphohydrolase 8
mm9_v1_chr1_+_9788206_9788302	0.156052	FOXA2.p3	NM_133220|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_177547|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK143836|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031133|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151793|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171120|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171186|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151867|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171678|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK172323|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK028722|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039247|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039427|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151181|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166414|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151996|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AF312007|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr17_+_24546733_24546845	0.155836	FOXA2.p3	BC038271|Abca3|27410|ATP-binding cassette, sub-family A (ABC1), member 3
mm9_v1_chr18_-_62915799_62916000	0.155733	FOXA2.p3	BC072581|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK012381|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene	AK020725|2700046A07Rik|78449|RIKEN cDNA 2700046A07 gene
mm9_v1_chr6_+_91706816_91706893	0.155318	FOXA2.p3	AK165837|Slc6a6|21366|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm9_v1_chr6_+_87040212_87040221	0.155029	FOXA2.p3	AK013141|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr6_-_71773747_71773805	0.154605	FOXA2.p3	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr1_-_168339909_168339980	0.153614	FOXA2.p3	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr9_+_77961044_77961183	0.152949	FOXA2.p3	NM_019987|Ick|56542|intestinal cell kinase	AK045950|Ick|56542|intestinal cell kinase	AK164613|Ick|56542|intestinal cell kinase	AK008991|Ick|56542|intestinal cell kinase	AK133537|Ick|56542|intestinal cell kinase	AK087484|Ick|56542|intestinal cell kinase
mm9_v1_chr2_-_35973217_35973333	0.152083	FOXA2.p3	
mm9_v1_chr14_+_48092305_48092319	0.151896	FOXA2.p3	AK171630|Fbxo34|78938|F-box protein 34
mm9_v1_chr9_-_51771451_51771665	0.151687	FOXA2.p3	BC099518|Fdx1|14148|ferredoxin 1	BC132173|Fdx1|14148|ferredoxin 1	BC132175|Fdx1|14148|ferredoxin 1	D43690|Fdx1|14148|ferredoxin 1	D43689|Fdx1|14148|ferredoxin 1	NM_007996|Fdx1|14148|ferredoxin 1	L29123|Fdx1|14148|ferredoxin 1	AK004879|Fdx1|14148|ferredoxin 1	AK148115|Fdx1|14148|ferredoxin 1
mm9_v1_chr11_-_98859189_98859196	0.150974	FOXA2.p3	U01915|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr19_+_12535536_12535672	0.150956	FOXA2.p3	L20315|Mpeg1|17476|macrophage expressed gene 1	BC129843|Mpeg1|17476|macrophage expressed gene 1	BC129844|Mpeg1|17476|macrophage expressed gene 1
mm9_v1_chr9_-_105372402_105372478	0.150569	FOXA2.p3	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr6_+_88043849_88043935	0.149261	FOXA2.p3	AK217962|Rpn1|103963|ribophorin I
mm9_v1_chr1_-_163061538_163061643	0.147068	FOXA2.p3	BC060183|Klhl20|226541|kelch-like 20 (Drosophila)	AK053102|Klhl20|226541|kelch-like 20 (Drosophila)	AK053371|Klhl20|226541|kelch-like 20 (Drosophila)	AK054169|Klhl20|226541|kelch-like 20 (Drosophila)	BC019571|Klhl20|226541|kelch-like 20 (Drosophila)	AK220547|Klhl20|226541|kelch-like 20 (Drosophila)	NM_001039482|Klhl20|226541|kelch-like 20 (Drosophila)
mm9_v1_chr4_+_47220883_47221121	0.146426	FOXA2.p3	NM_009928|Col15a1|12819|collagen, type XV, alpha 1	BC052428|Col15a1|12819|collagen, type XV, alpha 1	AF011450|Col15a1|12819|collagen, type XV, alpha 1	AK134030|Col15a1|12819|collagen, type XV, alpha 1
mm9_v1_chr10_-_62255007_62255115	0.14598	FOXA2.p3	BC034174|Ccar1|67500|cell division cycle and apoptosis regulator 1	BC051052|Ccar1|67500|cell division cycle and apoptosis regulator 1	NM_026201|Ccar1|67500|cell division cycle and apoptosis regulator 1
mm9_v1_chrM_-_622_663	0.145409	FOXA2.p3	
mm9_v1_chr1_+_97230610_97230736	0.144409	FOXA2.p3	AK152164|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chr11_-_32122236_32122250	0.142037	FOXA2.p3	BC027346|Rhbdf1|13650|rhomboid family 1 (Drosophila)
mm9_v1_chr1_+_75435521_75435559	0.141258	FOXA2.p3	AK189243|Gmppa|69080|GDP-mannose pyrophosphorylase A
mm9_v1_chr3_+_95039985_95040105	0.140633	FOXA2.p3	
mm9_v1_chr11_+_108811065_108811123	0.140271	FOXA2.p3	
mm9_v1_chr7_-_29959614_29959760	0.140042	FOXA2.p3	AK194690|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
mm9_v1_chr13_+_106233718_106234065	0.139978	FOXA2.p3	AK140194|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	NM_008308|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049884|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049814|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138669|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138681|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A
mm9_v1_chr17_+_72022598_72022608	0.139075	FOXA2.p3	NM_177087|Fam179a|320159|family with sequence similarity 179, member A
mm9_v1_chr19_+_9092973_9093058	0.138956	FOXA2.p3	AK003448|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)
mm9_v1_chr2_+_30271579_30271778	0.138884	FOXA2.p3	AK049184|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC006626|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	BC052852|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK160980|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AY035997|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	AK046288|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr2_+_163843294_163843512	0.138754	FOXA2.p3	AK206846|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK207996|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK212148|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK214843|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK215126|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK219468|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chrX_-_104035877_104035981	0.135799	FOXA2.p3	AK084983|Zcchc5|213436|zinc finger, CCHC domain containing 5	BC064821|Zcchc5|213436|zinc finger, CCHC domain containing 5	NM_199468|Zcchc5|213436|zinc finger, CCHC domain containing 5
mm9_v1_chr11_-_106642684_106642809	0.135357	FOXA2.p3	AK149022|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr17_+_47505827_47505888	0.134574	FOXA2.p3	NM_001146211|Mrps10|64657|mitochondrial ribosomal protein S10	NM_001146212|Mrps10|64657|mitochondrial ribosomal protein S10	AK142675|Mrps10|64657|mitochondrial ribosomal protein S10	AK004151|Mrps10|64657|mitochondrial ribosomal protein S10	BC038917|Mrps10|64657|mitochondrial ribosomal protein S10	BC096043|Mrps10|64657|mitochondrial ribosomal protein S10
mm9_v1_chr2_+_90894161_90894340	0.134549	FOXA2.p3	NM_008948|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	AK167002|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	AK167061|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	AK150189|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	D49686|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	BC005783|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3
mm9_v1_chr7_-_34926055_34926067	0.133816	FOXA2.p3	AK213025|Uba2|50995|ubiquitin-like modifier activating enzyme 2
mm9_v1_chr15_-_82863658_82863798	0.133572	FOXA2.p3	AK171201|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK155106|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK169918|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170811|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170545|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170593|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170677|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK171086|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170355|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK150635|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK151187|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK151884|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK152262|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK152499|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK152688|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170442|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170883|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK162939|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AF361364|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK170098|Nfam1|74039|Nfat activating molecule with ITAM motif 1	AK171082|Nfam1|74039|Nfat activating molecule with ITAM motif 1
mm9_v1_chr2_-_105843408_105843434	0.133446	FOXA2.p3	BC030072|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24	AK011571|Dnajc24|99349|DnaJ (Hsp40) homolog, subfamily C, member 24
mm9_v1_chr5_-_31490075_31490203	0.132166	FOXA2.p3	
mm9_v1_chr2_-_6466116_6466118	0.13214	FOXA2.p3	AK134815|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chrX_+_132806184_132806337	0.13195	FOXA2.p3	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr6_-_120745648_120745709	0.131773	FOXA2.p3	AK201997|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK196381|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr10_-_94786634_94786766	0.131366	FOXA2.p3	AK052304|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK136561|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AJ224738|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	NM_009950|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK163112|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain	AK144648|Cradd|12905|CASP2 and RIPK1 domain containing adaptor with death domain
mm9_v1_chr15_+_12082671_12082674	0.130104	FOXA2.p3	AK158938|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr5_-_37187799_37187854	0.129726	FOXA2.p3	BC085488|Mrfap1|67568|Morf4 family associated protein 1
mm9_v1_chr12_-_105228099_105228168	0.12955	FOXA2.p3	BC096585|Serpina11|380780|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	BC024087|Serpina11|380780|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	AK149420|Serpina11|380780|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	NM_199314|Serpina11|380780|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	BC096459|Serpina11|380780|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	NM_001166350|Serpina11|380780|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
mm9_v1_chr10_+_19890580_19890589	0.127651	FOXA2.p3	AK138516|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene	AK138667|1700026H06Rik|70376|RIKEN cDNA 1700026H06 gene
mm9_v1_chr10_-_66747843_66748097	0.126716	FOXA2.p3	AK181810|Nrbf2|641340|nuclear receptor binding factor 2	AK189272|Nrbf2|641340|nuclear receptor binding factor 2	AK205591|Nrbf2|641340|nuclear receptor binding factor 2	AK004200|Nrbf2|641340|nuclear receptor binding factor 2	BC019448|Nrbf2|641340|nuclear receptor binding factor 2	NM_001036293|Nrbf2|641340|nuclear receptor binding factor 2	AK002810|Nrbf2|641340|nuclear receptor binding factor 2
mm9_v1_chr6_+_64992584_64992660	0.125762	FOXA2.p3	NM_007958|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	X69942|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr14_-_122364309_122364416	0.124666	FOXA2.p3	BC052868|Gpr183|321019|G protein-coupled receptor 183	AK141593|Gpr183|321019|G protein-coupled receptor 183	AK153216|Gpr183|321019|G protein-coupled receptor 183	AK087951|Gpr183|321019|G protein-coupled receptor 183	AK156005|Gpr183|321019|G protein-coupled receptor 183	AK156289|Gpr183|321019|G protein-coupled receptor 183	NM_183031|Gpr183|321019|G protein-coupled receptor 183	AK138693|Gpr183|321019|G protein-coupled receptor 183
mm9_v1_chr18_+_24796993_24796998	0.124246	FOXA2.p3	AK213520|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)
mm9_v1_chr6_+_38542722_38542769	0.122839	FOXA2.p3	BC002314|Luc7l2|192196|LUC7-like 2 (S. cerevisiae)
mm9_v1_chr12_-_86682028_86682042	0.122191	FOXA2.p3	
mm9_v1_chr3_-_10331334_10331440	0.122102	FOXA2.p3	BC055722|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AF042730|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160467|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK083238|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK145472|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK011770|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK160203|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK165977|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	BC049080|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK078406|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK152774|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK147778|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK153457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	AK168457|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1	NM_018864|Impa1|55980|inositol (myo)-1(or 4)-monophosphatase 1
mm9_v1_chr4_+_13670425_13670448	0.120406	FOXA2.p3	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr14_+_30806158_30806226	0.119473	FOXA2.p3	AK179069|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)
mm9_v1_chr10_-_61441817_61441832	0.118153	FOXA2.p3	BC034164|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr19_+_5740903_5740936	0.118124	FOXA2.p3	AK080869|Ltbp3|16998|latent transforming growth factor beta binding protein 3	NM_008520|Ltbp3|16998|latent transforming growth factor beta binding protein 3
mm9_v1_chr16_-_5031999_5032052	0.118073	FOXA2.p3	AK188170|Glyr1|74022|glyoxylate reductase 1 homolog (Arabidopsis)
mm9_v1_chr10_-_80630456_80630508	0.117891	FOXA2.p3	AK131903|Pias4|59004|protein inhibitor of activated STAT 4	AK076943|Pias4|59004|protein inhibitor of activated STAT 4	BC025159|Pias4|59004|protein inhibitor of activated STAT 4	NM_021501|Pias4|59004|protein inhibitor of activated STAT 4	AK131822|Pias4|59004|protein inhibitor of activated STAT 4	AK148066|Pias4|59004|protein inhibitor of activated STAT 4	AK147813|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr10_+_74646587_74646710	0.117367	FOXA2.p3	
mm9_v1_chr9_-_121748578_121748578	0.117352	FOXA2.p3	NM_028384|Ccdc13|434446|coiled-coil domain containing 13
mm9_v1_chr7_-_34977928_34978057	0.117307	FOXA2.p3	BC025090|Pdcd2l|68079|programmed cell death 2-like	BC038524|Pdcd2l|68079|programmed cell death 2-like
mm9_v1_chr11_+_46268432_46268486	0.117228	FOXA2.p3	AK148474|Havcr2|171285|hepatitis A virus cellular receptor 2	NM_134250|Havcr2|171285|hepatitis A virus cellular receptor 2	AF450241|Havcr2|171285|hepatitis A virus cellular receptor 2	AY553334|Havcr2|171285|hepatitis A virus cellular receptor 2	AK170775|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106851|Havcr2|171285|hepatitis A virus cellular receptor 2	BC106852|Havcr2|171285|hepatitis A virus cellular receptor 2	AF399831|Havcr2|171285|hepatitis A virus cellular receptor 2
mm9_v1_chr13_+_4058817_4058874	0.116344	FOXA2.p3	AK086887|Akr1c14|105387|aldo-keto reductase family 1, member C14	AK033537|Akr1c14|105387|aldo-keto reductase family 1, member C14	AK136528|Akr1c14|105387|aldo-keto reductase family 1, member C14	BC013482|Akr1c14|105387|aldo-keto reductase family 1, member C14	NM_134072|Akr1c14|105387|aldo-keto reductase family 1, member C14	BC026628|Akr1c14|105387|aldo-keto reductase family 1, member C14	AY730283|Akr1c14|105387|aldo-keto reductase family 1, member C14
mm9_v1_chr15_+_78859949_78859971	0.115654	FOXA2.p3	
mm9_v1_chr19_-_32182638_32182709	0.115583	FOXA2.p3	AB037111|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK080951|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK041937|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK047692|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK046540|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK166100|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK034493|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr7_-_149558139_149558173	0.113706	FOXA2.p3	BC049666|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK045822|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK163573|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	NM_177265|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK031961|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene
mm9_v1_chr13_+_100184848_100184979	0.113192	FOXA2.p3	
mm9_v1_chr14_+_120675041_120675104	0.112647	FOXA2.p3	AK178090|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr7_+_88907871_88907915	0.110864	FOXA2.p3	AK150938|Fam103a1|67148|family with sequence similarity 103, member A1	BC091760|Fam103a1|67148|family with sequence similarity 103, member A1	AK010694|Fam103a1|67148|family with sequence similarity 103, member A1	BC096399|Fam103a1|67148|family with sequence similarity 103, member A1	BC058367|Fam103a1|67148|family with sequence similarity 103, member A1
mm9_v1_chr3_+_52072251_52072295	0.110266	FOXA2.p3	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr9_-_119932620_119932715	0.109827	FOXA2.p3	BC117959|Xirp1|22437|xin actin-binding repeat containing 1	BC117960|Xirp1|22437|xin actin-binding repeat containing 1	AF051945|Xirp1|22437|xin actin-binding repeat containing 1	NM_011724|Xirp1|22437|xin actin-binding repeat containing 1
mm9_v1_chr16_+_48816968_48817099	0.109229	FOXA2.p3	AF290871|Retnlb|57263|resistin like beta	NM_023881|Retnlb|57263|resistin like beta	AK020240|Retnlb|57263|resistin like beta	AF323083|Retnlb|57263|resistin like beta	BC022650|Retnlb|57263|resistin like beta
mm9_v1_chr15_+_65703468_65703625	0.10904	FOXA2.p3	AK039483|Efr3a|76740|EFR3 homolog A (S. cerevisiae)
mm9_v1_chr19_+_56536126_56536129	0.107185	FOXA2.p3	NM_001164263|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	NM_172641|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK036908|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene	AK053921|9930023K05Rik|226245|RIKEN cDNA 9930023K05 gene
mm9_v1_chrX_-_9046362_9046456	0.10684	FOXA2.p3	U43384|Cybb|13058|cytochrome b-245, beta polypeptide	AK033570|Cybb|13058|cytochrome b-245, beta polypeptide	AK053920|Cybb|13058|cytochrome b-245, beta polypeptide	AK079926|Cybb|13058|cytochrome b-245, beta polypeptide	BC071229|Cybb|13058|cytochrome b-245, beta polypeptide	BC042838|Cybb|13058|cytochrome b-245, beta polypeptide	AK152257|Cybb|13058|cytochrome b-245, beta polypeptide	AK153154|Cybb|13058|cytochrome b-245, beta polypeptide	AK153259|Cybb|13058|cytochrome b-245, beta polypeptide	AK171526|Cybb|13058|cytochrome b-245, beta polypeptide	FJ168469|Cybb|13058|cytochrome b-245, beta polypeptide	AK154126|Cybb|13058|cytochrome b-245, beta polypeptide	NM_007807|Cybb|13058|cytochrome b-245, beta polypeptide
mm9_v1_chr9_+_106091656_106091698	0.106705	FOXA2.p3	BC054453|Wdr82|77305|WD repeat domain containing 82	BC112907|Wdr82|77305|WD repeat domain containing 82	BC044669|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr15_+_103130086_103130158	0.104903	FOXA2.p3	
mm9_v1_chr8_+_73053287_73053425	0.10392	FOXA2.p3	BC003739|Fkbp8|14232|FK506 binding protein 8	AY225340|Fkbp8|14232|FK506 binding protein 8	AK216136|Fkbp8|14232|FK506 binding protein 8	AF030635|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr16_+_34995000_34995001	0.10352	FOXA2.p3	BC038902|Mylk|107589|myosin, light polypeptide kinase
mm9_v1_chr14_-_66211842_66211926	0.103093	FOXA2.p3	NM_028811|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK012072|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK150058|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	BC057453|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)	AK088457|Elp3|74195|elongation protein 3 homolog (S. cerevisiae)
mm9_v1_chr4_+_8534378_8534506	0.102849	FOXA2.p3	AK216326|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr4_+_154927385_154927543	0.102846	FOXA2.p3	BC003294|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr19_-_5383965_5384040	0.102753	FOXA2.p3	
mm9_v1_chr15_+_81626455_81626512	0.102539	FOXA2.p3	AJ223207|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr17_-_28502087_28502126	0.101808	FOXA2.p3	NM_021478|Tulp1|22157|tubby like protein 1	BC014820|Tulp1|22157|tubby like protein 1	BC029222|Tulp1|22157|tubby like protein 1
mm9_v1_chr10_+_21015762_21015859	0.101741	FOXA2.p3	NM_001042593|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_001145209|Hbs1l|56422|Hbs1-like (S. cerevisiae)	NM_019702|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK006626|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK146678|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK166140|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK168671|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK169281|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK012856|Hbs1l|56422|Hbs1-like (S. cerevisiae)	AK173091|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC085235|Hbs1l|56422|Hbs1-like (S. cerevisiae)	BC010251|Hbs1l|56422|Hbs1-like (S. cerevisiae)
mm9_v1_chr13_-_101386865_101386925	0.101644	FOXA2.p3	DQ143929|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	DQ682659|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	DQ682661|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	AK156238|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	NM_178410|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	AK133741|Marveld2|218518|MARVEL (membrane-associating) domain containing 2	NM_001038602|Marveld2|218518|MARVEL (membrane-associating) domain containing 2
mm9_v1_chr3_+_60432922_60432975	0.101374	FOXA2.p3	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr15_+_59480237_59480243	0.101369	FOXA2.p3	AK080228|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chrX_-_7248403_7248534	0.100997	FOXA2.p3	BC119088|Plp2|18824|proteolipid protein 2	BC119090|Plp2|18824|proteolipid protein 2	NM_019755|Plp2|18824|proteolipid protein 2	AB031292|Plp2|18824|proteolipid protein 2	BC092095|Plp2|18824|proteolipid protein 2	BC083078|Plp2|18824|proteolipid protein 2	AK011282|Plp2|18824|proteolipid protein 2	AK003522|Plp2|18824|proteolipid protein 2	AK154228|Plp2|18824|proteolipid protein 2	AK012816|Plp2|18824|proteolipid protein 2
mm9_v1_chr17_-_14831233_14831243	0.100177	FOXA2.p3	AK142552|Thbs2|21826|thrombospondin 2
mm9_v1_chr11_+_102051080_102051165	0.100153	FOXA2.p3	AK165395|G6pc3|68401|glucose 6 phosphatase, catalytic, 3	AY186239|G6pc3|68401|glucose 6 phosphatase, catalytic, 3
mm9_v1_chr19_-_6982094_6982140	0.0993601	FOXA2.p3	BC014682|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr2_-_152223710_152223930	0.0986405	FOXA2.p3	BC067019|Sox12|20667|SRY-box containing gene 12	NM_011438|Sox12|20667|SRY-box containing gene 12
mm9_v1_chr19_+_45122065_45122176	0.0985036	FOXA2.p3	NM_001178012|Sfxn3|94280|sideroflexin 3	NM_001178013|Sfxn3|94280|sideroflexin 3	NM_053197|Sfxn3|94280|sideroflexin 3	BC012208|Sfxn3|94280|sideroflexin 3
mm9_v1_chr1_+_129101551_129101562	0.0981746	FOXA2.p3	NM_145128|Mgat5|107895|mannoside acetylglucosaminyltransferase 5
mm9_v1_chr18_-_39646734_39646900	0.0975156	FOXA2.p3	AK037733|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	DQ504162|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	HM236293|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13358|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X13359|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	NM_008173|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129912|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	BC129913|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	X04435|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr14_-_57719048_57719093	0.0970517	FOXA2.p3	AK178984|Gjb2|14619|gap junction protein, beta 2	AK189228|Gjb2|14619|gap junction protein, beta 2
mm9_v1_chr1_+_137647796_137647915	0.0970255	FOXA2.p3	AK216299|Csrp1|13007|cysteine and glycine-rich protein 1	AK178295|Csrp1|13007|cysteine and glycine-rich protein 1	AK188439|Csrp1|13007|cysteine and glycine-rich protein 1	AK217070|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr16_+_92086695_92086827	0.0970171	FOXA2.p3	AK133105|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3
mm9_v1_chr5_-_130363202_130363339	0.0966395	FOXA2.p3	AK088374|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2	NM_024166|Chchd2|14004|coiled-coil-helix-coiled-coil-helix domain containing 2
mm9_v1_chr1_-_172989475_172989533	0.0965815	FOXA2.p3	BC052819|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897424|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897420|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK159919|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897419|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897421|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897422|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897423|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897429|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897425|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897426|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897427|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK151557|Fcgr3|14131|Fc receptor, IgG, low affinity III	AY897428|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK077227|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK151795|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK152875|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK153384|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK153449|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK169887|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK154892|Fcgr3|14131|Fc receptor, IgG, low affinity III	AK171289|Fcgr3|14131|Fc receptor, IgG, low affinity III	AF197930|Fcgr3|14131|Fc receptor, IgG, low affinity III	M14215|Fcgr3|14131|Fc receptor, IgG, low affinity III	NM_010188|Fcgr3|14131|Fc receptor, IgG, low affinity III
mm9_v1_chr18_+_84257252_84257278	0.096235	FOXA2.p3	AK134901|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2
mm9_v1_chr3_+_80840337_80840337	0.0960572	FOXA2.p3	AF266467|Pdgfc|54635|platelet-derived growth factor, C polypeptide	NM_019971|Pdgfc|54635|platelet-derived growth factor, C polypeptide
mm9_v1_chr13_+_43497279_43497424	0.0960005	FOXA2.p3	AK140839|Nol7|70078|nucleolar protein 7
mm9_v1_chr2_+_154692935_154692951	0.0948876	FOXA2.p3	AK048403|C130057N11Rik|99061|RIKEN cDNA C130057N11 gene
mm9_v1_chr6_+_116288075_116288140	0.0940926	FOXA2.p3	BC053090|March8|71779|membrane-associated ring finger (C3HC4) 8	NM_027920|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr12_+_99506844_99506881	0.0940374	FOXA2.p3	AK134113|Gpr65|14744|G-protein coupled receptor 65	NM_008152|Gpr65|14744|G-protein coupled receptor 65	U39827|Gpr65|14744|G-protein coupled receptor 65	AK142853|Gpr65|14744|G-protein coupled receptor 65
mm9_v1_chr1_-_155396839_155396845	0.0936153	FOXA2.p3	BC022734|Npl|74091|N-acetylneuraminate pyruvate lyase	AK154216|F630010C12Rik|100038670|RIKEN cDNA F630010C12 gene	AK002734|Npl|74091|N-acetylneuraminate pyruvate lyase	NM_028749|Npl|74091|N-acetylneuraminate pyruvate lyase	AK088859|Npl|74091|N-acetylneuraminate pyruvate lyase
mm9_v1_chr2_-_35316760_35317051	0.0933902	FOXA2.p3	BC006810|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK088605|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M26925|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	M85153|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AF297615|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_001145821|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	NM_010283|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK004753|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3	AK159087|Ggta1|14594|glycoprotein galactosyltransferase alpha 1, 3
mm9_v1_chr3_+_110053107_110053119	0.0932933	FOXA2.p3	AK030551|C130013H08Rik|100327264|RIKEN cDNA C130013H08 gene
mm9_v1_chr9_-_36540210_36540345	0.0924397	FOXA2.p3	AK017358|Stt3a|16430|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
mm9_v1_chr12_-_76815494_76815519	0.092403	FOXA2.p3	
mm9_v1_chr4_-_11131570_11131684	0.0863395	FOXA2.p3	AK050920|Ints8|72656|integrator complex subunit 8
mm9_v1_chr17_-_30729995_30730086	0.0856657	FOXA2.p3	
mm9_v1_chr1_+_165992203_165992294	0.0849964	FOXA2.p3	AK170753|Sell|20343|selectin, lymphocyte	NM_001164059|Sell|20343|selectin, lymphocyte	NM_011346|Sell|20343|selectin, lymphocyte	AK161754|Sell|20343|selectin, lymphocyte	AK157273|Sell|20343|selectin, lymphocyte	AK172116|Sell|20343|selectin, lymphocyte	BC052681|Sell|20343|selectin, lymphocyte	M25324|Sell|20343|selectin, lymphocyte	X14772|Sell|20343|selectin, lymphocyte	M36005|Sell|20343|selectin, lymphocyte	M36058|Sell|20343|selectin, lymphocyte	AK137509|Sell|20343|selectin, lymphocyte
mm9_v1_chr11_+_85322997_85323115	0.0847572	FOXA2.p3	AK192083|Bcas3|192197|breast carcinoma amplified sequence 3
mm9_v1_chr2_+_30271550_30271576	0.0846732	FOXA2.p3	AK031591|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)	NM_138748|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr6_-_48036561_48036593	0.0845363	FOXA2.p3	AK156312|Zfp746|69228|zinc finger protein 746	NM_001163475|Zfp746|69228|zinc finger protein 746
mm9_v1_chr2_+_26775279_26775409	0.0844596	FOXA2.p3	AK215042|Surf2|20931|surfeit gene 2
mm9_v1_chr2_-_30270820_30270884	0.084428	FOXA2.p3	AK187827|Crat|12908|carnitine acetyltransferase	AK218779|Crat|12908|carnitine acetyltransferase
mm9_v1_chr5_-_123411478_123411530	0.0834167	FOXA2.p3	
mm9_v1_chr2_-_25947338_25947397	0.0813996	FOXA2.p3	AK043047|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr5_+_75548309_75548318	0.0807348	FOXA2.p3	NM_011058|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide	AK081664|Pdgfra|18595|platelet derived growth factor receptor, alpha polypeptide
mm9_v1_chr2_-_155555105_155555210	0.0799721	FOXA2.p3	AK075650|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	BC008268|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK149892|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK040560|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK079296|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK166998|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK080636|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK029164|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK155024|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	NM_145537|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2
mm9_v1_chr10_-_61970481_61970509	0.0792406	FOXA2.p3	BC037076|Srgn|19073|serglycin	J04549|Srgn|19073|serglycin	AK157945|Srgn|19073|serglycin	M34603|Srgn|19073|serglycin	NM_011157|Srgn|19073|serglycin	X16133|Srgn|19073|serglycin	AK168124|Srgn|19073|serglycin	AK151357|Srgn|19073|serglycin
mm9_v1_chr10_+_98725871_98725972	0.0782237	FOXA2.p3	AK009131|Dusp6|67603|dual specificity phosphatase 6	AK159146|Dusp6|67603|dual specificity phosphatase 6	AK159900|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr1_+_90303576_90303673	0.0779849	FOXA2.p3	AK002814|Spp2|75396|secreted phosphoprotein 2	NM_029269|Spp2|75396|secreted phosphoprotein 2	AJ315513|Spp2|75396|secreted phosphoprotein 2	BC027494|Spp2|75396|secreted phosphoprotein 2
mm9_v1_chr4_+_97439119_97439136	0.0775183	FOXA2.p3	AK161966|A130013F12Rik|320308|RIKEN cDNA A130013F12 gene
mm9_v1_chr2_+_87642546_87642547	0.0765739	FOXA2.p3	BC140120|Olfr1143|258290|olfactory receptor 1143	BC140161|Olfr1143|258290|olfactory receptor 1143	BC140202|Olfr1143|258290|olfactory receptor 1143	NM_146293|Olfr1143|258290|olfactory receptor 1143
mm9_v1_chr10_-_80630518_80630667	0.0738383	FOXA2.p3	AK145367|Pias4|59004|protein inhibitor of activated STAT 4	AF109174|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr5_-_66543123_66543228	0.0733813	FOXA2.p3	AK170082|Rbm47|245945|RNA binding motif protein 47	NM_001127382|Rbm47|245945|RNA binding motif protein 47
mm9_v1_chr11_-_54533036_54533041	0.072664	FOXA2.p3	
mm9_v1_chr19_+_32694494_32694583	0.0722163	FOXA2.p3	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr11_-_70223528_70223535	0.0719562	FOXA2.p3	AK005027|Pelp1|75273|proline, glutamic acid and leucine rich protein 1	AK016197|Pelp1|75273|proline, glutamic acid and leucine rich protein 1	AK128966|Pelp1|75273|proline, glutamic acid and leucine rich protein 1	NM_029231|Pelp1|75273|proline, glutamic acid and leucine rich protein 1
mm9_v1_chr4_-_116312481_116312553	0.0712695	FOXA2.p3	AK181349|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr15_+_59480204_59480213	0.0699391	FOXA2.p3	AK033358|Trib1|211770|tribbles homolog 1 (Drosophila)	AK028626|Trib1|211770|tribbles homolog 1 (Drosophila)	AK040738|Trib1|211770|tribbles homolog 1 (Drosophila)	AK041212|Trib1|211770|tribbles homolog 1 (Drosophila)	AK162876|Trib1|211770|tribbles homolog 1 (Drosophila)	NM_144549|Trib1|211770|tribbles homolog 1 (Drosophila)
mm9_v1_chr8_-_71664851_71664907	0.0696777	FOXA2.p3	AF288601|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC127606|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC127607|Lzts1|211134|leucine zipper, putative tumor suppressor 1	NM_199364|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC139350|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC139352|Lzts1|211134|leucine zipper, putative tumor suppressor 1
mm9_v1_chr9_-_110959315_110959476	0.0694483	FOXA2.p3	AJ318863|Ccrl2|54199|chemokine (C-C motif) receptor-like 2	AF316576|Ccrl2|54199|chemokine (C-C motif) receptor-like 2
mm9_v1_chr16_+_49868005_49868080	0.0693263	FOXA2.p3	BC009094|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr7_+_17334480_17334612	0.06911	FOXA2.p3	AK208745|Ap2s1|232910|adaptor-related protein complex 2, sigma 1 subunit
mm9_v1_chr13_+_94077988_94077988	0.0687123	FOXA2.p3	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr10_-_61441842_61441910	0.0686505	FOXA2.p3	NM_007731|Col13a1|12817|collagen, type XIII, alpha 1	U30292|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr16_-_19983049_19983121	0.0675567	FOXA2.p3	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr12_+_77471173_77471252	0.0669177	FOXA2.p3	AK035036|Zbtb1|268564|zinc finger and BTB domain containing 1	AK049397|Zbtb1|268564|zinc finger and BTB domain containing 1	AY611626|Zbtb1|268564|zinc finger and BTB domain containing 1	NM_178744|Zbtb1|268564|zinc finger and BTB domain containing 1
mm9_v1_chr12_+_4850108_4850199	0.0660859	FOXA2.p3	NM_001170858|BC068281|238037|cDNA sequence BC068281	NM_173416|BC068281|238037|cDNA sequence BC068281	AK163398|BC068281|238037|cDNA sequence BC068281	AK040407|BC068281|238037|cDNA sequence BC068281	BC068281|BC068281|238037|cDNA sequence BC068281	AK155130|BC068281|238037|cDNA sequence BC068281	AK164024|BC068281|238037|cDNA sequence BC068281
mm9_v1_chr11_-_4494790_4494809	0.0655324	FOXA2.p3	BC032166|Mtmr3|74302|myotubularin related protein 3	AK141138|Mtmr3|74302|myotubularin related protein 3	BC081544|Mtmr3|74302|myotubularin related protein 3
mm9_v1_chr12_+_32008372_32008419	0.063736	FOXA2.p3	AK141833|Lamb1|16777|laminin B1
mm9_v1_chr9_+_70526702_70526924	0.0632778	FOXA2.p3	BC066207|Adam10|11487|a disintegrin and metallopeptidase domain 10	NM_007399|Adam10|11487|a disintegrin and metallopeptidase domain 10	BC057346|Adam10|11487|a disintegrin and metallopeptidase domain 10
mm9_v1_chr10_+_38685424_38685646	0.0632593	FOXA2.p3	AK054014|Lama4|16775|laminin, alpha 4	AK032825|Lama4|16775|laminin, alpha 4	AK145237|Lama4|16775|laminin, alpha 4	Y09827|Lama4|16775|laminin, alpha 4	AK085945|Lama4|16775|laminin, alpha 4	U59865|Lama4|16775|laminin, alpha 4	BC115942|Lama4|16775|laminin, alpha 4
mm9_v1_chr6_-_83781657_83781701	0.0629714	FOXA2.p3	BC017133|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC034096|Paip2b|232164|poly(A) binding protein interacting protein 2B	BC039969|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK173114|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK168804|Paip2b|232164|poly(A) binding protein interacting protein 2B	AK045922|Paip2b|232164|poly(A) binding protein interacting protein 2B
mm9_v1_chr5_+_31552275_31552343	0.0624886	FOXA2.p3	AK215481|Nrbp1|192292|nuclear receptor binding protein 1	AK182568|Nrbp1|192292|nuclear receptor binding protein 1	AK185308|Nrbp1|192292|nuclear receptor binding protein 1	AK196002|Nrbp1|192292|nuclear receptor binding protein 1	AK219460|Nrbp1|192292|nuclear receptor binding protein 1
mm9_v1_chrX_-_71618617_71618655	0.0621699	FOXA2.p3	BC023050|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	AK041958|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr16_+_87354429_87354497	0.0619012	FOXA2.p3	AY456393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_001159331|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	NM_026366|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116393|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC116394|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK160298|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK145617|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	BC098330|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AK012019|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)	AY536887|N6amt1|67768|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm9_v1_chr2_-_26092876_26092939	0.0618025	FOXA2.p3	AK157992|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK140324|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK165642|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	BC030934|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	NM_153559|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2
mm9_v1_chr13_-_115078961_115078988	0.0611836	FOXA2.p3	AK035175|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr9_-_90165508_90165664	0.0607886	FOXA2.p3	AK089175|Tbc1d2b|67016|TBC1 domain family, member 2B	AK129273|Tbc1d2b|67016|TBC1 domain family, member 2B	AK156788|Tbc1d2b|67016|TBC1 domain family, member 2B	NM_194334|Tbc1d2b|67016|TBC1 domain family, member 2B	AK148382|Tbc1d2b|67016|TBC1 domain family, member 2B
mm9_v1_chr4_+_57906588_57906598	0.0595322	FOXA2.p3	AK081365|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr8_+_112741857_112741896	0.0586515	FOXA2.p3	NM_146215|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	AK158368|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	AK032855|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	AK050315|Ftsjd1|234728|FtsJ methyltransferase domain containing 1	BC025546|Ftsjd1|234728|FtsJ methyltransferase domain containing 1
mm9_v1_chr16_+_4940212_4940403	0.0574085	FOXA2.p3	AK183937|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	AK193716|Nudt16l1|66911|nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1
mm9_v1_chr1_+_175350728_175350734	0.0562063	FOXA2.p3	BC033443|Aim2|383619|absent in melanoma 2	AK050724|Aim2|383619|absent in melanoma 2	NM_001013779|Aim2|383619|absent in melanoma 2
mm9_v1_chr9_-_108976549_108976650	0.0558612	FOXA2.p3	AK172342|Atrip|235610|ATR interacting protein	BC078458|Atrip|235610|ATR interacting protein	AK171423|Atrip|235610|ATR interacting protein	AK020102|Atrip|235610|ATR interacting protein	AK031257|Atrip|235610|ATR interacting protein	NM_172774|Atrip|235610|ATR interacting protein
mm9_v1_chr2_+_127951773_127951787	0.055814	FOXA2.p3	AK031285|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK037885|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK150464|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK152472|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK153542|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK162975|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_009754|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_207680|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_207681|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK082613|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	BC019556|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK011490|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK050192|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)
mm9_v1_chr8_+_87189015_87189026	0.0557654	FOXA2.p3	
mm9_v1_chr1_-_153317422_153317565	0.0554818	FOXA2.p3	AK211660|Rnf2|19821|ring finger protein 2
mm9_v1_chr10_+_79217820_79217863	0.0551974	FOXA2.p3	BC119135|Fgf22|67112|fibroblast growth factor 22	AK008922|Fgf22|67112|fibroblast growth factor 22	AK010054|Fgf22|67112|fibroblast growth factor 22	AB036765|Fgf22|67112|fibroblast growth factor 22	NM_023304|Fgf22|67112|fibroblast growth factor 22
mm9_v1_chr2_+_80457201_80457422	0.0546776	FOXA2.p3	AF237618|Dusp19|68082|dual specificity phosphatase 19	NM_024438|Dusp19|68082|dual specificity phosphatase 19	AK010127|Dusp19|68082|dual specificity phosphatase 19	AK077871|Dusp19|68082|dual specificity phosphatase 19	AK170170|Dusp19|68082|dual specificity phosphatase 19	AK018369|Dusp19|68082|dual specificity phosphatase 19	AB051896|Dusp19|68082|dual specificity phosphatase 19	AK049927|Dusp19|68082|dual specificity phosphatase 19	AB038769|Dusp19|68082|dual specificity phosphatase 19	BC021591|Dusp19|68082|dual specificity phosphatase 19	AK083610|Dusp19|68082|dual specificity phosphatase 19
mm9_v1_chr9_+_121643763_121643808	0.0543976	FOXA2.p3	AK052484|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr4_-_126540249_126540348	0.0543746	FOXA2.p3	AK018207|Zmym4|67785|zinc finger, MYM-type 4
mm9_v1_chr11_-_86171026_86171057	0.0535011	FOXA2.p3	NM_001080931|Med13|327987|mediator complex subunit 13
mm9_v1_chr2_+_145760519_145760551	0.0526415	FOXA2.p3	AK019712|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	AK038772|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	NM_175280|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	AK086391|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC107030|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC107031|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC057361|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC058733|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene
mm9_v1_chr3_+_102800607_102800650	0.0523802	FOXA2.p3	
mm9_v1_chr6_+_116287992_116288071	0.0521486	FOXA2.p3	AK154976|March8|71779|membrane-associated ring finger (C3HC4) 8	BC050908|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr2_+_164312023_164312078	0.0520935	FOXA2.p3	BC019947|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	AY187289|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr6_+_116288073_116288073	0.0518224	FOXA2.p3	AK165647|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr4_-_108311676_108311740	0.0512733	FOXA2.p3	
mm9_v1_chr12_-_86097486_86097537	0.0512144	FOXA2.p3	
mm9_v1_chr11_-_120489993_120490076	0.0511692	FOXA2.p3	AK038934|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	AK083165|Mafg|17134|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm9_v1_chrX_-_47988434_47988499	0.050586	FOXA2.p3	AK030946|6720401G13Rik|103012|RIKEN cDNA 6720401G13 gene
mm9_v1_chr17_-_32524703_32524761	0.0504806	FOXA2.p3	AB255388|Wiz|22404|widely-interspaced zinc finger motifs	NM_212438|Wiz|22404|widely-interspaced zinc finger motifs
mm9_v1_chr1_-_4350323_4350394	0.0499542	FOXA2.p3	BC038794|Rp1|19888|retinitis pigmentosa 1 (human)	BC120927|Rp1|19888|retinitis pigmentosa 1 (human)	BC120928|Rp1|19888|retinitis pigmentosa 1 (human)	AF155141|Rp1|19888|retinitis pigmentosa 1 (human)	AK044413|Rp1|19888|retinitis pigmentosa 1 (human)	BC096607|Rp1|19888|retinitis pigmentosa 1 (human)	NM_011283|Rp1|19888|retinitis pigmentosa 1 (human)
mm9_v1_chr5_+_91456489_91456542	0.0495551	FOXA2.p3	BC119291|Epgn|71920|epithelial mitogen	BC119293|Epgn|71920|epithelial mitogen	BC145041|Epgn|71920|epithelial mitogen	AJ291391|Epgn|71920|epithelial mitogen	NM_053087|Epgn|71920|epithelial mitogen
mm9_v1_chr15_+_82005685_82005731	0.0480233	FOXA2.p3	AK197179|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr13_+_113657736_113657889	0.0463266	FOXA2.p3	
mm9_v1_chr8_+_73053432_73053453	0.0455866	FOXA2.p3	AB154247|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr15_+_8918001_8918118	0.0443066	FOXA2.p3	AK048152|Ranbp3l|223332|RAN binding protein 3-like	AK132406|Ranbp3l|223332|RAN binding protein 3-like	BC058706|Ranbp3l|223332|RAN binding protein 3-like	NM_198024|Ranbp3l|223332|RAN binding protein 3-like
mm9_v1_chr11_-_98671371_98671404	0.043963	FOXA2.p3	AK087290|Gm12359|100037262|predicted gene 12359	AK142978|Gm12359|100037262|predicted gene 12359
mm9_v1_chr11_-_55233354_55233357	0.0433695	FOXA2.p3	BC004638|Sparc|20692|secreted acidic cysteine rich glycoprotein
mm9_v1_chr15_+_6395353_6395370	0.0422337	FOXA2.p3	X05475|C9|12279|complement component 9
mm9_v1_chrX_-_92853721_92853847	0.0415743	FOXA2.p3	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr5_+_104868321_104868417	0.039713	FOXA2.p3	BC014284|Spp1|20750|secreted phosphoprotein 1
mm9_v1_chr2_+_34729897_34729955	0.0396936	FOXA2.p3	AK033810|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	AK085616|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene	NM_030021|D730039F16Rik|77996|RIKEN cDNA D730039F16 gene
mm9_v1_chr2_-_25947466_25947505	0.0396576	FOXA2.p3	AK147310|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	AK157946|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr14_+_48092244_48092299	0.0389644	FOXA2.p3	BC049155|Fbxo34|78938|F-box protein 34	AK013711|Fbxo34|78938|F-box protein 34
mm9_v1_chr3_+_64913289_64913311	0.038737	FOXA2.p3	AK031362|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	AK138467|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1	X97281|Kcnab1|16497|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm9_v1_chr11_+_20124648_20124793	0.0383877	FOXA2.p3	AK207850|Rab1|19324|RAB1, member RAS oncogene family	AK215283|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr4_-_94645735_94645794	0.0379463	FOXA2.p3	AK164103|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK081684|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK145221|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK166402|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC150946|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC151172|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK043802|Mysm1|320713|myb-like, SWIRM and MPN domains 1	NM_177239|Mysm1|320713|myb-like, SWIRM and MPN domains 1
mm9_v1_chr9_-_26815760_26815835	0.0376017	FOXA2.p3	AK210283|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr19_+_32670279_32670283	0.0370457	FOXA2.p3	AK137675|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr9_-_53012444_53012529	0.0348874	FOXA2.p3	AK166787|Ddx10|77591|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
mm9_v1_chr8_-_93657815_93657824	0.0348413	FOXA2.p3	
mm9_v1_chr2_+_37056762_37056762	0.0335576	FOXA2.p3	NM_146662|Olfr365|258656|olfactory receptor 365
mm9_v1_chr17_-_65929913_65929945	0.0325313	FOXA2.p3	
mm9_v1_chr9_-_32348863_32349036	0.0321374	FOXA2.p3	BC138791|Fli1|14247|Friend leukemia integration 1	BC138792|Fli1|14247|Friend leukemia integration 1	AK042111|Fli1|14247|Friend leukemia integration 1	AK154714|Fli1|14247|Friend leukemia integration 1	NM_008026|Fli1|14247|Friend leukemia integration 1	AK036655|Fli1|14247|Friend leukemia integration 1	X59421|Fli1|14247|Friend leukemia integration 1
mm9_v1_chr8_-_89409079_89409204	0.0314682	FOXA2.p3	AK134934|N4bp1|80750|NEDD4 binding protein 1	AK172981|N4bp1|80750|NEDD4 binding protein 1	AK147522|N4bp1|80750|NEDD4 binding protein 1	NM_030563|N4bp1|80750|NEDD4 binding protein 1
mm9_v1_chr19_-_42358648_42358713	0.030391	FOXA2.p3	AK013349|Crtac1|72832|cartilage acidic protein 1
mm9_v1_chr4_+_126850123_126850181	0.0302885	FOXA2.p3	AK158868|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr11_-_79337178_79337240	0.0291798	FOXA2.p3	AK171686|Evi2b|216984|ecotropic viral integration site 2b	BC017548|Evi2b|216984|ecotropic viral integration site 2b	AK170476|Evi2b|216984|ecotropic viral integration site 2b	AK039968|Evi2b|216984|ecotropic viral integration site 2b
mm9_v1_chr18_-_39572137_39572180	0.0282805	FOXA2.p3	AK171439|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1	AK163857|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr19_-_29101759_29101824	0.028276	FOXA2.p3	
mm9_v1_chr2_-_91284778_91284823	0.0281598	FOXA2.p3	BC089006|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	AK164320|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	BC085239|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	AK045977|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	NM_175123|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene	BC032255|1110051M20Rik|228356|RIKEN cDNA 1110051M20 gene
mm9_v1_chr11_+_106124121_106124160	0.0271532	FOXA2.p3	AK189340|Psmc5|19184|protease (prosome, macropain) 26S subunit, ATPase 5
mm9_v1_chr5_+_139856534_139856673	0.0268882	FOXA2.p3	AK155280|Gpr146|80290|G protein-coupled receptor 146	AK154478|Gpr146|80290|G protein-coupled receptor 146	AK046512|Gpr146|80290|G protein-coupled receptor 146	AK089232|Gpr146|80290|G protein-coupled receptor 146	AK154708|Gpr146|80290|G protein-coupled receptor 146	AK155876|Gpr146|80290|G protein-coupled receptor 146	NM_030258|Gpr146|80290|G protein-coupled receptor 146	BC003323|Gpr146|80290|G protein-coupled receptor 146	AK050034|Gpr146|80290|G protein-coupled receptor 146	AK087100|Gpr146|80290|G protein-coupled receptor 146	AK155212|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr15_+_44027680_44027795	0.0268117	FOXA2.p3	AK134591|Trhr|22045|thyrotropin releasing hormone receptor	NM_013696|Trhr|22045|thyrotropin releasing hormone receptor	M59811|Trhr|22045|thyrotropin releasing hormone receptor	M94384|Trhr|22045|thyrotropin releasing hormone receptor	BC109005|Trhr|22045|thyrotropin releasing hormone receptor	BC109006|Trhr|22045|thyrotropin releasing hormone receptor	BC128269|Trhr|22045|thyrotropin releasing hormone receptor
mm9_v1_chr5_-_21371421_21371421	0.0263521	FOXA2.p3	AF529192|Slc26a5|80979|solute carrier family 26, member 5	NM_030727|Slc26a5|80979|solute carrier family 26, member 5
mm9_v1_chr11_+_53270706_53270763	0.0260393	FOXA2.p3	NM_027917|Shroom1|71774|shroom family member 1	BC005761|Shroom1|71774|shroom family member 1	AK035462|Shroom1|71774|shroom family member 1	AK085693|Shroom1|71774|shroom family member 1
mm9_v1_chr8_+_34807688_34807718	0.0257047	FOXA2.p3	AK027984|Gsr|14782|glutathione reductase
mm9_v1_chr2_+_109739389_109739489	0.0252099	FOXA2.p3	AK078903|Lin7c|22343|lin-7 homolog C (C. elegans)	AK049807|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr16_-_36071600_36071716	0.0251148	FOXA2.p3	AK009946|Fam162a|70186|family with sequence similarity 162, member A	NM_027342|Fam162a|70186|family with sequence similarity 162, member A	BC010826|Fam162a|70186|family with sequence similarity 162, member A	AK033568|Fam162a|70186|family with sequence similarity 162, member A
mm9_v1_chr10_+_115254308_115254566	0.024793	FOXA2.p3	AK087696|Tspan8|216350|tetraspanin 8	AK077301|Tspan8|216350|tetraspanin 8	BC027777|Tspan8|216350|tetraspanin 8	BC029808|Tspan8|216350|tetraspanin 8	NM_001168679|Tspan8|216350|tetraspanin 8	NM_001168680|Tspan8|216350|tetraspanin 8	NM_146010|Tspan8|216350|tetraspanin 8	BC029068|Tspan8|216350|tetraspanin 8	BC025461|Tspan8|216350|tetraspanin 8	BC034198|Tspan8|216350|tetraspanin 8
mm9_v1_chr10_+_127525425_127525449	0.0241929	FOXA2.p3	AK003460|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr17_-_66234064_66234193	0.0238473	FOXA2.p3	AK019116|Ralbp1|19765|ralA binding protein 1	AK159404|Ralbp1|19765|ralA binding protein 1	X80937|Ralbp1|19765|ralA binding protein 1	BC054329|Ralbp1|19765|ralA binding protein 1	BC076636|Ralbp1|19765|ralA binding protein 1
mm9_v1_chr1_-_74590801_74590859	0.0236439	FOXA2.p3	BC139091|Usp37|319651|ubiquitin specific peptidase 37	AK133317|Usp37|319651|ubiquitin specific peptidase 37	AK030013|Usp37|319651|ubiquitin specific peptidase 37	NM_176972|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr4_-_53156928_53156953	0.0234265	FOXA2.p3	X75926|Abca1|11303|ATP-binding cassette, sub-family A (ABC1), member 1
mm9_v1_chr17_-_26063534_26063588	0.0228471	FOXA2.p3	
mm9_v1_chr1_+_155599081_155599148	0.0212971	FOXA2.p3	AK053125|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	AK054205|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm9_v1_chr5_-_3596078_3596116	0.0205163	FOXA2.p3	AK047811|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene	AK041876|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene
mm9_v1_chr7_-_52104448_52104476	0.018632	FOXA2.p3	BC017607|Tbc1d17|233204|TBC1 domain family, member 17	NM_001042655|Tbc1d17|233204|TBC1 domain family, member 17
mm9_v1_chr3_-_38349112_38349206	0.0185661	FOXA2.p3	BC051515|Ankrd50|99696|ankyrin repeat domain 50
mm9_v1_chr4_-_148524194_148524430	0.0176753	FOXA2.p3	AK198787|Pgd|110208|phosphogluconate dehydrogenase	AK208960|Pgd|110208|phosphogluconate dehydrogenase
mm9_v1_chr4_+_13711928_13711928	0.017322	FOXA2.p3	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr5_-_143579060_143579087	0.0168863	FOXA2.p3	BC049818|Tnrc18|231861|trinucleotide repeat containing 18	NM_001122730|Tnrc18|231861|trinucleotide repeat containing 18	NM_178242|Tnrc18|231861|trinucleotide repeat containing 18
mm9_v1_chr19_-_29409041_29409159	0.0166315	FOXA2.p3	BC111817|Rln1|19773|relaxin 1	BC148202|Rln1|19773|relaxin 1	Z27088|Rln1|19773|relaxin 1	BC132654|Rln1|19773|relaxin 1	BC132656|Rln1|19773|relaxin 1	NM_011272|Rln1|19773|relaxin 1
mm9_v1_chr12_-_32017267_32017279	0.0157688	FOXA2.p3	AK209175|Dld|13382|dihydrolipoamide dehydrogenase
mm9_v1_chr11_-_95171479_95171519	0.015357	FOXA2.p3	AK169458|Myst2|217127|MYST histone acetyltransferase 2	BC057102|Myst2|217127|MYST histone acetyltransferase 2	DQ076247|Myst2|217127|MYST histone acetyltransferase 2	AK160750|Myst2|217127|MYST histone acetyltransferase 2	AK170389|Myst2|217127|MYST histone acetyltransferase 2	BC048904|Myst2|217127|MYST histone acetyltransferase 2	AK164336|Myst2|217127|MYST histone acetyltransferase 2
mm9_v1_chr7_+_127741138_127741298	0.015059	FOXA2.p3	AK021400|E130201H02Rik|78552|Y box protein 1 pseudogene	BC094539|E130201H02Rik|78552|Y box protein 1 pseudogene
mm9_v1_chr3_-_59066744_59066767	0.0145924	FOXA2.p3	BC025428|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12	AK013804|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12	NM_027571|P2ry12|70839|purinergic receptor P2Y, G-protein coupled 12
mm9_v1_chr2_-_69180643_69180677	0.0145403	FOXA2.p3	AF133903|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11	AK144553|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11	NM_021022|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11
mm9_v1_chr11_-_77997042_77997098	0.0139885	FOXA2.p3	BC026656|Rpl23a|268449|ribosomal protein L23A	BC096637|Rpl23a|268449|ribosomal protein L23A	AF452721|Rpl23a|268449|ribosomal protein L23A	BC029892|Rpl23a|268449|ribosomal protein L23A	AK028387|Rpl23a|268449|ribosomal protein L23A	AK152095|Rpl23a|268449|ribosomal protein L23A	BC086884|Rpl23a|268449|ribosomal protein L23A	BC086883|Rpl23a|268449|ribosomal protein L23A	BC125640|Rpl23a|268449|ribosomal protein L23A	BC125642|Rpl23a|268449|ribosomal protein L23A	NM_207523|Rpl23a|268449|ribosomal protein L23A
mm9_v1_chr2_+_166849936_166849995	0.013536	FOXA2.p3	
mm9_v1_chr19_-_16342088_16342126	0.0134873	FOXA2.p3	
mm9_v1_chr6_-_71094313_71094369	0.0127547	FOXA2.p3	BC025604|Thnsl2|232078|threonine synthase-like 2 (bacterial)	BC051244|Thnsl2|232078|threonine synthase-like 2 (bacterial)	AK165463|Thnsl2|232078|threonine synthase-like 2 (bacterial)	NM_001033929|Thnsl2|232078|threonine synthase-like 2 (bacterial)	NM_178413|Thnsl2|232078|threonine synthase-like 2 (bacterial)
mm9_v1_chr12_-_105011807_105011857	0.0126462	FOXA2.p3	NM_009246|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr15_+_84022647_84022764	0.0125528	FOXA2.p3	AK159740|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK039949|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	NM_178614|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK144975|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK041783|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK084395|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119178|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	BC119180|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK086633|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK167806|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK161378|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169066|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK169351|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK003990|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)	AK168510|Samm50|68653|sorting and assembly machinery component 50 homolog (S. cerevisiae)
mm9_v1_chr11_-_54769546_54769594	0.0123162	FOXA2.p3	BC008186|Tnip1|57783|TNFAIP3 interacting protein 1
mm9_v1_chr12_-_113205152_113205166	0.0121057	FOXA2.p3	BC055712|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr6_+_56935288_56935335	0.0108886	FOXA2.p3	BC138068|Vmn1r5|171192|vomeronasal 1 receptor 5	BC138069|Vmn1r5|171192|vomeronasal 1 receptor 5	NM_134174|Vmn1r5|171192|vomeronasal 1 receptor 5
mm9_v1_chr17_+_34176412_34176421	0.0108357	FOXA2.p3	D38412|Col11a2|12815|collagen, type XI, alpha 2
mm9_v1_chr2_+_30271577_30271577	0.0104237	FOXA2.p3	AK150029|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr11_-_4494815_4494822	0.0103466	FOXA2.p3	NM_028860|Mtmr3|74302|myotubularin related protein 3
mm9_v1_chr16_-_38800293_38800318	0.0101229	FOXA2.p3	BC046604|Upk1b|22268|uroplakin 1B	AK083101|Upk1b|22268|uroplakin 1B	AK086926|Upk1b|22268|uroplakin 1B	AK053004|Upk1b|22268|uroplakin 1B	NM_178924|Upk1b|22268|uroplakin 1B
mm9_v1_chr14_-_37690597_37690679	0.00995416	FOXA2.p3	AK084686|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr3_+_88968894_88969004	0.00932306	FOXA2.p3	AF033564|Clk2|12748|CDC-like kinase 2
mm9_v1_chr11_+_45869473_45869501	0.00911514	FOXA2.p3	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr6_-_3918353_3918426	0.00901739	FOXA2.p3	NM_009364|Tfpi2|21789|tissue factor pathway inhibitor 2	D50586|Tfpi2|21789|tissue factor pathway inhibitor 2	AK132268|Tfpi2|21789|tissue factor pathway inhibitor 2
mm9_v1_chr16_+_38742446_38742523	0.00857034	FOXA2.p3	AK041692|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK136637|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm9_v1_chr8_+_74120004_74120094	0.00657846	FOXA2.p3	
mm9_v1_chr6_+_122871804_122871930	0.00565451	FOXA2.p3	BC049354|Clec4a1|269799|C-type lectin domain family 4, member a1	NM_199311|Clec4a1|269799|C-type lectin domain family 4, member a1	AY397675|Clec4a1|269799|C-type lectin domain family 4, member a1
mm9_v1_chr13_-_115178227_115178301	0.00466938	FOXA2.p3	AF124785|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020552|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	BC004618|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK011124|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020108|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	NM_010887|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr17_-_35268696_35268782	0.00359747	FOXA2.p3	AF207820|Apom|55938|apolipoprotein M	NM_018816|Apom|55938|apolipoprotein M	BC021597|Apom|55938|apolipoprotein M	AK004530|Apom|55938|apolipoprotein M
mm9_v1_chr3_+_123045975_123046085	0.00347899	FOXA2.p3	BC038038|Sec24d|69608|Sec24 related gene family, member D (S. cerevisiae)	BC049257|Sec24d|69608|Sec24 related gene family, member D (S. cerevisiae)
mm9_v1_chr5_+_150821249_150821339	0.0014835	FOXA2.p3	AF346501|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	NM_080468|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	BC120741|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	BC144802|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	BC144803|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2	AK034592|Rxfp2|140498|relaxin/insulin-like family peptide receptor 2
