mm9_v1_chr6_+_4697305_4697405	4.94856	GCAGCAU	NM_001040611|Peg10|170676|paternally expressed 10	NM_130877|Peg10|170676|paternally expressed 10	AB091827|Peg10|170676|paternally expressed 10	AJ006464|Peg10|170676|paternally expressed 10
mm9_v1_chr19_-_19185685_19185685	4.8262	GCAGCAU	NM_001043354|Rorb|225998|RAR-related orphan receptor beta
mm9_v1_chr10_+_68996455_68996596	3.54804	GCAGCAU	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr3_-_122322556_122322614	3.33158	GCAGCAU	AK151930|Fnbp1l|214459|formin binding protein 1-like	AK152002|Fnbp1l|214459|formin binding protein 1-like	NM_001114665|Fnbp1l|214459|formin binding protein 1-like	NM_153118|Fnbp1l|214459|formin binding protein 1-like
mm9_v1_chr14_-_35187767_35187878	2.87827	GCAGCAU	AJ786826|Sncg|20618|synuclein, gamma	AF017255|Sncg|20618|synuclein, gamma	AK141509|Sncg|20618|synuclein, gamma	BC028508|Sncg|20618|synuclein, gamma	NM_011430|Sncg|20618|synuclein, gamma
mm9_v1_chr1_-_12980994_12981257	2.42274	GCAGCAU	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr11_+_80290509_80290569	2.3285	GCAGCAU	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr2_-_131178551_131178627	2.32348	GCAGCAU	BC096529|Rnf24|51902|ring finger protein 24	AK154093|Rnf24|51902|ring finger protein 24	AK048813|Rnf24|51902|ring finger protein 24	AK015699|Rnf24|51902|ring finger protein 24	AK089207|Rnf24|51902|ring finger protein 24	AK083665|Rnf24|51902|ring finger protein 24	NM_178607|Rnf24|51902|ring finger protein 24
mm9_v1_chr1_+_59969845_59969868	2.28603	GCAGCAU	AK154812|Fam117b|72750|family with sequence similarity 117, member B	NM_001037725|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr5_+_31014229_31014273	2.1779	GCAGCAU	AK044866|Dpysl5|65254|dihydropyrimidinase-like 5	BC065054|Dpysl5|65254|dihydropyrimidinase-like 5	NM_023047|Dpysl5|65254|dihydropyrimidinase-like 5	BC103789|Dpysl5|65254|dihydropyrimidinase-like 5
mm9_v1_chr1_-_99666564_99666675	2.12922	GCAGCAU	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr4_+_13670425_13670448	2.00288	GCAGCAU	AK142006|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_001111026|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr2_-_153270059_153270214	1.90892	GCAGCAU	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr19_-_14672472_14672537	1.70104	GCAGCAU	AK017548|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)	NM_011600|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr14_+_117324518_117324572	1.60567	GCAGCAU	AK164668|Gpc6|23888|glypican 6	AK135442|Gpc6|23888|glypican 6	NM_001079844|Gpc6|23888|glypican 6	NM_011821|Gpc6|23888|glypican 6
mm9_v1_chrX_+_139952975_139953253	1.54014	GCAGCAU	AK158893|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195048|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AK031853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr5_-_92512683_92512782	1.5365	GCAGCAU	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr4_+_13678443_13678575	1.48984	GCAGCAU	NM_001111027|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr1_-_171677653_171677778	1.42827	GCAGCAU	AB004315|Rgs4|19736|regulator of G-protein signaling 4	BC003882|Rgs4|19736|regulator of G-protein signaling 4	BC055293|Rgs4|19736|regulator of G-protein signaling 4	AK030536|Rgs4|19736|regulator of G-protein signaling 4	AK039134|Rgs4|19736|regulator of G-protein signaling 4	DQ346659|Rgs4|19736|regulator of G-protein signaling 4	DQ346660|Rgs4|19736|regulator of G-protein signaling 4	DQ346661|Rgs4|19736|regulator of G-protein signaling 4	NM_009062|Rgs4|19736|regulator of G-protein signaling 4
mm9_v1_chr15_-_90880241_90880381	1.39825	GCAGCAU	AF202892|Kif21a|16564|kinesin family member 21A	BC060698|Kif21a|16564|kinesin family member 21A	BC062896|Kif21a|16564|kinesin family member 21A	AK163536|Kif21a|16564|kinesin family member 21A	AK047880|Kif21a|16564|kinesin family member 21A	AK147436|Kif21a|16564|kinesin family member 21A	AK008213|Kif21a|16564|kinesin family member 21A	AK047350|Kif21a|16564|kinesin family member 21A	NM_001109040|Kif21a|16564|kinesin family member 21A	NM_001109041|Kif21a|16564|kinesin family member 21A	NM_001109042|Kif21a|16564|kinesin family member 21A	NM_016705|Kif21a|16564|kinesin family member 21A	AK019525|Kif21a|16564|kinesin family member 21A
mm9_v1_chr2_-_69424085_69424123	1.38482	GCAGCAU	AK049346|Lrp2|14725|low density lipoprotein receptor-related protein 2	AK084165|Lrp2|14725|low density lipoprotein receptor-related protein 2	AK165434|Lrp2|14725|low density lipoprotein receptor-related protein 2	NM_001081088|Lrp2|14725|low density lipoprotein receptor-related protein 2
mm9_v1_chr9_+_102620096_102620187	1.34152	GCAGCAU	AK141348|Amotl2|56332|angiomotin-like 2	AK164819|Amotl2|56332|angiomotin-like 2	NM_019764|Amotl2|56332|angiomotin-like 2	AK077535|Amotl2|56332|angiomotin-like 2	AK169419|Amotl2|56332|angiomotin-like 2	BC035201|Amotl2|56332|angiomotin-like 2	BC027824|Amotl2|56332|angiomotin-like 2
mm9_v1_chr1_-_97564139_97564174	1.26145	GCAGCAU	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr2_-_65405546_65405588	1.25296	GCAGCAU	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr10_-_121484248_121484370	1.22632	GCAGCAU	NM_001081037|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120892|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	BC120893|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1	AK138257|Srgap1|117600|SLIT-ROBO Rho GTPase activating protein 1
mm9_v1_chr5_+_28492235_28492251	1.16718	GCAGCAU	AK157766|En2|13799|engrailed 2	NM_010134|En2|13799|engrailed 2
mm9_v1_chr6_+_124946723_124946772	1.16713	GCAGCAU	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr3_+_146515330_146515360	1.15369	GCAGCAU	NM_027594|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr1_+_62749850_62750115	1.15301	GCAGCAU	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr6_-_98978185_98978383	1.12499	GCAGCAU	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr3_-_107434441_107434654	1.10355	GCAGCAU	AK194900|Fam40a|229707|family with sequence similarity 40, member A	BC023952|Fam40a|229707|family with sequence similarity 40, member A	AK032065|Fam40a|229707|family with sequence similarity 40, member A	AK032642|Fam40a|229707|family with sequence similarity 40, member A	AK035833|Fam40a|229707|family with sequence similarity 40, member A	AK148011|Fam40a|229707|family with sequence similarity 40, member A	AK169644|Fam40a|229707|family with sequence similarity 40, member A	NM_153563|Fam40a|229707|family with sequence similarity 40, member A
mm9_v1_chrX_-_13423666_13423727	1.09932	GCAGCAU	NM_009806|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	Y17137|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	Y17138|Cask|12361|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm9_v1_chr3_-_104315778_104315782	1.0932	GCAGCAU	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr2_-_160934743_160934810	1.04576	GCAGCAU	BC145629|Chd6|71389|chromodomain helicase DNA binding protein 6	BC150806|Chd6|71389|chromodomain helicase DNA binding protein 6	AK018129|Chd6|71389|chromodomain helicase DNA binding protein 6	AK040495|Chd6|71389|chromodomain helicase DNA binding protein 6	AK142177|Chd6|71389|chromodomain helicase DNA binding protein 6	AK086807|Chd6|71389|chromodomain helicase DNA binding protein 6	AK162083|Chd6|71389|chromodomain helicase DNA binding protein 6	NM_173368|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080892|Chd6|71389|chromodomain helicase DNA binding protein 6	AK080927|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chr14_-_111154292_111154370	1.04389	GCAGCAU	AK029275|Slitrk6|239250|SLIT and NTRK-like family, member 6	AK044796|Slitrk6|239250|SLIT and NTRK-like family, member 6	NM_175499|Slitrk6|239250|SLIT and NTRK-like family, member 6
mm9_v1_chr1_+_55188086_55188145	1.0411	GCAGCAU	NM_025283|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK162327|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK147857|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK020446|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC028500|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC037499|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC058168|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC052475|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	U01138|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)
mm9_v1_chr1_-_133141708_133141776	1.03652	GCAGCAU	AF053959|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK005059|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK155534|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK029321|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	BC089605|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	NM_018750|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5
mm9_v1_chr2_+_119722957_119723040	1.02699	GCAGCAU	AK046252|Mga|29808|MAX gene associated	NM_001164274|Mga|29808|MAX gene associated	NM_013720|Mga|29808|MAX gene associated	AK162302|Mga|29808|MAX gene associated	AK032570|Mga|29808|MAX gene associated	AK012050|Mga|29808|MAX gene associated	AK139919|Mga|29808|MAX gene associated	AK172962|Mga|29808|MAX gene associated
mm9_v1_chrX_-_153929935_153930011	1.02577	GCAGCAU	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr9_+_109834266_109834307	1.01795	GCAGCAU	NM_008633|Mtap4|17758|microtubule-associated protein 4	AK046825|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chrX_+_98835386_98835624	1.01683	GCAGCAU	AK076418|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	NM_139144|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AK163296|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC025097|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC057319|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC037194|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	BC055851|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	AF363030|Ogt|108155|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm9_v1_chr1_+_57831651_57831771	0.989521	GCAGCAU	NM_144882|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK012791|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK019292|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK161988|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK031266|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	BC021879|Spats2l|67198|spermatogenesis associated, serine-rich 2-like	AK032169|Spats2l|67198|spermatogenesis associated, serine-rich 2-like
mm9_v1_chr11_-_102417457_102417523	0.976093	GCAGCAU	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr13_-_41454358_41454379	0.963079	GCAGCAU	AK054179|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK033729|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_017464|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr18_-_62071494_62071513	0.962227	GCAGCAU	NM_001164491|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr1_-_137481914_137481937	0.959524	GCAGCAU	NM_173437|Nav1|215690|neuron navigator 1
mm9_v1_chr7_+_63305516_63305584	0.925154	GCAGCAU	NM_010418|Herc2|15204|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm9_v1_chrX_+_155970593_155970627	0.923306	GCAGCAU	AK044001|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene	NM_001033472|A830080D01Rik|382252|RIKEN cDNA A830080D01 gene
mm9_v1_chr6_-_57775039_57775171	0.907133	GCAGCAU	BC024884|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170152|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170832|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK030975|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	BC024822|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	NM_146168|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK031812|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK158041|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK165256|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1
mm9_v1_chr3_+_151873407_151873495	0.899824	GCAGCAU	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr5_+_34338625_34338665	0.890519	GCAGCAU	AK147307|Nat8l|269642|N-acetyltransferase 8-like	NM_001001985|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr5_-_38108301_38108391	0.87196	GCAGCAU	BC052404|Stk32b|64293|serine/threonine kinase 32B	BC058412|Stk32b|64293|serine/threonine kinase 32B	BC056396|Stk32b|64293|serine/threonine kinase 32B	AK082468|Stk32b|64293|serine/threonine kinase 32B	NM_022416|Stk32b|64293|serine/threonine kinase 32B
mm9_v1_chr10_-_93498488_93498564	0.848681	GCAGCAU	AK036017|Vezt|215008|vezatin, adherens junctions transmembrane protein	NM_172538|Vezt|215008|vezatin, adherens junctions transmembrane protein	AK041354|Vezt|215008|vezatin, adherens junctions transmembrane protein	AK031848|Vezt|215008|vezatin, adherens junctions transmembrane protein
mm9_v1_chr16_+_35022488_35022506	0.834681	GCAGCAU	NM_023587|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
mm9_v1_chr8_-_17535279_17535384	0.829943	GCAGCAU	AY017475|Csmd1|94109|CUB and Sushi multiple domains 1	AK038679|Csmd1|94109|CUB and Sushi multiple domains 1	AK048698|Csmd1|94109|CUB and Sushi multiple domains 1	AK134585|Csmd1|94109|CUB and Sushi multiple domains 1	NM_053171|Csmd1|94109|CUB and Sushi multiple domains 1
mm9_v1_chr8_-_89409079_89409204	0.817597	GCAGCAU	AK134934|N4bp1|80750|NEDD4 binding protein 1	AK172981|N4bp1|80750|NEDD4 binding protein 1	AK147522|N4bp1|80750|NEDD4 binding protein 1	NM_030563|N4bp1|80750|NEDD4 binding protein 1
mm9_v1_chr14_-_27783615_27783757	0.811319	GCAGCAU	AK030445|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK045438|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK088080|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AY113705|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK033566|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK146356|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK049307|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	NM_145221|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	BC063751|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm9_v1_chr5_+_15440508_15440728	0.80517	GCAGCAU	AK164580|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110843|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110844|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110845|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_001110846|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	NM_009784|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK084101|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73483|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73484|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73485|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73486|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	U73487|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	BC115871|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1	AK052898|Cacna2d1|12293|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm9_v1_chr14_-_34260323_34260352	0.787651	GCAGCAU	AK139498|Mapk8|26419|mitogen-activated protein kinase 8	AK032486|Mapk8|26419|mitogen-activated protein kinase 8	AK043102|Mapk8|26419|mitogen-activated protein kinase 8	AK085745|Mapk8|26419|mitogen-activated protein kinase 8	AK030767|Mapk8|26419|mitogen-activated protein kinase 8	NM_016700|Mapk8|26419|mitogen-activated protein kinase 8
mm9_v1_chrX_+_130829763_130829919	0.782481	GCAGCAU	BC042623|Tmem35|67564|transmembrane protein 35	NM_026239|Tmem35|67564|transmembrane protein 35	BC050880|Tmem35|67564|transmembrane protein 35
mm9_v1_chr11_+_69831951_69832106	0.772429	GCAGCAU	NM_001109752|Dlg4|13385|discs, large homolog 4 (Drosophila)	NM_007864|Dlg4|13385|discs, large homolog 4 (Drosophila)
mm9_v1_chr10_-_70062025_70062087	0.756016	GCAGCAU	AK032166|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	AK083011|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like	NM_178621|Phyhipl|70911|phytanoyl-CoA hydroxylase interacting protein-like
mm9_v1_chr2_+_5872500_5872551	0.743375	GCAGCAU	BC049622|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	NM_001081132|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138358|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)	BC138359|Upf2|326622|UPF2 regulator of nonsense transcripts homolog (yeast)
mm9_v1_chr5_-_5380077_5380250	0.727814	GCAGCAU	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr18_-_62071451_62071482	0.723508	GCAGCAU	BC094229|Ablim3|319713|actin binding LIM protein family, member 3	AK082380|Ablim3|319713|actin binding LIM protein family, member 3	BC060275|Ablim3|319713|actin binding LIM protein family, member 3	NM_198649|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr13_+_54723144_54723248	0.716823	GCAGCAU	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr7_-_104886756_104886798	0.698246	GCAGCAU	AK075757|Aqp11|66333|aquaporin 11	NM_175105|Aqp11|66333|aquaporin 11	AK006005|Aqp11|66333|aquaporin 11	AK137326|Aqp11|66333|aquaporin 11
mm9_v1_chr5_-_38550627_38550759	0.68264	GCAGCAU	AF035683|Nsg1|18196|neuron specific gene family member 1	AK144503|Nsg1|18196|neuron specific gene family member 1	BC008272|Nsg1|18196|neuron specific gene family member 1	AK078054|Nsg1|18196|neuron specific gene family member 1	AK148941|Nsg1|18196|neuron specific gene family member 1	AX775765|Nsg1|18196|neuron specific gene family member 1	NM_010942|Nsg1|18196|neuron specific gene family member 1
mm9_v1_chr4_-_126210701_126210715	0.666918	GCAGCAU	NM_153177|Eif2c4|76850|eukaryotic translation initiation factor 2C, 4	AK030018|Eif2c4|76850|eukaryotic translation initiation factor 2C, 4
mm9_v1_chr19_-_31839462_31839522	0.663823	GCAGCAU	AK051624|Prkg1|19091|protein kinase, cGMP-dependent, type I	AK083991|Prkg1|19091|protein kinase, cGMP-dependent, type I	NM_001013833|Prkg1|19091|protein kinase, cGMP-dependent, type I
mm9_v1_chrX_-_133403050_133403118	0.662837	GCAGCAU	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr9_-_21856445_21856470	0.6536	GCAGCAU	U29148|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	BC052097|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	AK090281|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	NM_010487|Elavl3|15571|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
mm9_v1_chr14_+_35123796_35123914	0.650948	GCAGCAU	AK150637|Glud1|14661|glutamate dehydrogenase 1	NM_008133|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr1_-_135975681_135975731	0.64648	GCAGCAU	BC132259|Btg2|12227|B-cell translocation gene 2, anti-proliferative	BC138639|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK088976|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169436|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK133796|Btg2|12227|B-cell translocation gene 2, anti-proliferative	AK169269|Btg2|12227|B-cell translocation gene 2, anti-proliferative	NM_007570|Btg2|12227|B-cell translocation gene 2, anti-proliferative
mm9_v1_chr14_-_21613162_21613325	0.644451	GCAGCAU	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr6_+_61130318_61130318	0.640402	GCAGCAU	NM_001164316|Fam190a|232035|family with sequence similarity 190, member A	NM_183310|Fam190a|232035|family with sequence similarity 190, member A
mm9_v1_chr2_+_156022382_156022502	0.638629	GCAGCAU	NM_172674|Phf20|228829|PHD finger protein 20	AK045309|Phf20|228829|PHD finger protein 20	AK033017|Phf20|228829|PHD finger protein 20	AK038573|Phf20|228829|PHD finger protein 20	AK142424|Phf20|228829|PHD finger protein 20	BC060121|Phf20|228829|PHD finger protein 20
mm9_v1_chr8_-_60131768_60131885	0.634597	GCAGCAU	AF349573|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK030683|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK033427|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK036523|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	BC052461|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	AK041791|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_001167981|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	NM_144731|Galnt7|108150|UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7
mm9_v1_chr1_+_70772288_70772496	0.620469	GCAGCAU	BC094541|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	NM_177164|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK083856|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	BC064448|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like	AK080585|Vwc2l|320460|von Willebrand factor C domain-containing protein 2-like
mm9_v1_chr2_-_125684720_125684819	0.618637	GCAGCAU	AF071312|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	BC023096|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AF087688|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK145225|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK146153|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK132207|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK084421|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK010383|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK037757|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	AK132776|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)	NM_009939|Cops2|12848|COP9 (constitutive photomorphogenic) homolog, subunit 2 (Arabidopsis thaliana)
mm9_v1_chr1_+_193149772_193149878	0.613191	GCAGCAU	AK049641|Tmem206|66950|transmembrane protein 206	AK031270|Tmem206|66950|transmembrane protein 206	AK012107|Tmem206|66950|transmembrane protein 206	AK009526|Tmem206|66950|transmembrane protein 206	AK044482|Tmem206|66950|transmembrane protein 206	NM_025864|Tmem206|66950|transmembrane protein 206	BC027151|Tmem206|66950|transmembrane protein 206
mm9_v1_chr11_+_72503487_72503520	0.610064	GCAGCAU	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr11_+_72861327_72861399	0.605463	GCAGCAU	NM_025818|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK163780|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK017496|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK020130|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK165317|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK004766|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK033682|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153152|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK153241|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC118943|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	AK011450|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene	BC098495|1200014J11Rik|66874|RIKEN cDNA 1200014J11 gene
mm9_v1_chrX_-_39265047_39265129	0.5975	GCAGCAU	AK140950|Thoc2|331401|THO complex 2	AK138023|Thoc2|331401|THO complex 2	NM_001033422|Thoc2|331401|THO complex 2	AK137966|Thoc2|331401|THO complex 2
mm9_v1_chr2_+_128891655_128891754	0.597163	GCAGCAU	NM_027192|Ttl|69737|tubulin tyrosine ligase	BC024414|Ttl|69737|tubulin tyrosine ligase	AK084377|Ttl|69737|tubulin tyrosine ligase
mm9_v1_chr1_+_82836029_82836087	0.595802	GCAGCAU	AK048326|Agfg1|15463|ArfGAP with FG repeats 1	NM_010472|Agfg1|15463|ArfGAP with FG repeats 1	AK049400|Agfg1|15463|ArfGAP with FG repeats 1	BC031154|Agfg1|15463|ArfGAP with FG repeats 1
mm9_v1_chr1_-_134638361_134638397	0.591254	GCAGCAU	AK052440|Nfasc|269116|neurofascin	NM_001160317|Nfasc|269116|neurofascin	NM_182716|Nfasc|269116|neurofascin
mm9_v1_chr4_+_32051053_32051104	0.588072	GCAGCAU	AK145302|Map3k7|26409|mitogen-activated protein kinase kinase kinase 7	AK137046|Map3k7|26409|mitogen-activated protein kinase kinase kinase 7	NM_009316|Map3k7|26409|mitogen-activated protein kinase kinase kinase 7	NM_172688|Map3k7|26409|mitogen-activated protein kinase kinase kinase 7	BC006665|Map3k7|26409|mitogen-activated protein kinase kinase kinase 7	D76446|Map3k7|26409|mitogen-activated protein kinase kinase kinase 7	AK053911|Map3k7|26409|mitogen-activated protein kinase kinase kinase 7
mm9_v1_chr6_+_56664888_56664904	0.579114	GCAGCAU	AK147365|Avl9|78937|AVL9 homolog (S. cerevisiase)	NM_030235|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr12_-_4038848_4038914	0.5676	GCAGCAU	BC147643|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	BC157968|Efr3b|668212|EFR3 homolog B (S. cerevisiae)	NM_001082483|Efr3b|668212|EFR3 homolog B (S. cerevisiae)
mm9_v1_chr13_-_111070392_111070417	0.5646	GCAGCAU	AK014050|Rab3c|67295|RAB3C, member RAS oncogene family	NM_023852|Rab3c|67295|RAB3C, member RAS oncogene family
mm9_v1_chr5_+_138526303_138526341	0.561461	GCAGCAU	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr2_-_84490827_84490896	0.549351	GCAGCAU	BC054544|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC043108|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK161790|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK164485|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK168453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085448|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085449|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085450|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_007615|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr12_-_105990160_105990320	0.541269	GCAGCAU	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr12_+_112404645_112404765	0.539824	GCAGCAU	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr14_-_37781943_37781973	0.533861	GCAGCAU	AK147383|Gcap14|72972|granule cell antiserum positive 14	NM_027045|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr2_-_6805937_6806041	0.530024	GCAGCAU	AK042749|Celf2|14007|CUGBP, Elav-like family member 2	AK164112|Celf2|14007|CUGBP, Elav-like family member 2	AK052102|Celf2|14007|CUGBP, Elav-like family member 2	AK135166|Celf2|14007|CUGBP, Elav-like family member 2	BC026856|Celf2|14007|CUGBP, Elav-like family member 2	AF090697|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110228|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160293|Celf2|14007|CUGBP, Elav-like family member 2	NM_010160|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chrX_-_45561726_45561881	0.522591	GCAGCAU	BC042618|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK035745|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK079248|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032252|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032233|Zdhhc9|208884|zinc finger, DHHC domain containing 9	NM_172465|Zdhhc9|208884|zinc finger, DHHC domain containing 9
mm9_v1_chr13_-_102538106_102538184	0.521892	GCAGCAU	M60651|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	U50413|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	BC026146|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK160493|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK171366|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001077495|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr7_+_129210684_129210770	0.515441	GCAGCAU	AK077395|Ubfd1|28018|ubiquitin family domain containing 1	NM_138589|Ubfd1|28018|ubiquitin family domain containing 1	BC011313|Ubfd1|28018|ubiquitin family domain containing 1	AK033428|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr2_+_153117135_153117203	0.511988	GCAGCAU	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr11_+_17059297_17059300	0.504767	GCAGCAU	NM_024459|Ppp3r1|19058|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm9_v1_chr7_+_133966816_133966816	0.501878	GCAGCAU	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr3_+_55046447_55046542	0.496768	GCAGCAU	AK147831|Dclk1|13175|doublecortin-like kinase 1	NM_001111053|Dclk1|13175|doublecortin-like kinase 1	NM_001195538|Dclk1|13175|doublecortin-like kinase 1	NM_019978|Dclk1|13175|doublecortin-like kinase 1	AB093234|Dclk1|13175|doublecortin-like kinase 1	AK164993|Dclk1|13175|doublecortin-like kinase 1	AF155820|Dclk1|13175|doublecortin-like kinase 1	BC064783|Dclk1|13175|doublecortin-like kinase 1	BC021354|Dclk1|13175|doublecortin-like kinase 1	AK043874|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr11_-_87172419_87172533	0.491	GCAGCAU	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr19_-_60019520_60019556	0.488951	GCAGCAU	AK015534|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001164367|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr8_-_106966899_106966946	0.486732	GCAGCAU	BC058645|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	AK050575|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2	NM_001013380|Dync1li2|234663|dynein, cytoplasmic 1 light intermediate chain 2
mm9_v1_chr7_-_89079335_89079355	0.4852	GCAGCAU	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr13_-_89881946_89882116	0.48515	GCAGCAU	BC021652|Vcan|13003|versican	AK163927|Vcan|13003|versican	AK135324|Vcan|13003|versican	AK032794|Vcan|13003|versican	NM_001081249|Vcan|13003|versican	NM_001134474|Vcan|13003|versican	NM_001134475|Vcan|13003|versican	NM_019389|Vcan|13003|versican	NM_172955|Vcan|13003|versican
mm9_v1_chr12_-_47919695_47919761	0.478608	GCAGCAU	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr14_-_20902310_20902393	0.475915	GCAGCAU	BC027644|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK031748|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK007941|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	AK015650|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene	NM_026209|1810063B07Rik|67509|RIKEN cDNA 1810063B07 gene
mm9_v1_chr6_-_32538191_32538191	0.473437	GCAGCAU	AB073228|Plxna4|243743|plexin A4	NM_175750|Plxna4|243743|plexin A4
mm9_v1_chr18_-_43847367_43847426	0.46467	GCAGCAU	AK133750|Jakmip2|76217|janus kinase and microtubule interacting protein 2	NM_001163637|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr9_-_62994774_62994817	0.464663	GCAGCAU	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr16_+_32332294_32332380	0.462409	GCAGCAU	NM_177633|Ubxn7|224111|UBX domain protein 7	AK147730|Ubxn7|224111|UBX domain protein 7	BC062904|Ubxn7|224111|UBX domain protein 7
mm9_v1_chr9_-_62996767_62996767	0.453616	GCAGCAU	AK029916|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163758|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr17_+_6106829_6106853	0.452161	GCAGCAU	NM_001103181|Tulp4|68842|tubby like protein 4
mm9_v1_chr19_+_6363686_6363698	0.450522	GCAGCAU	NM_001110791|Sf1|22668|splicing factor 1	NM_011750|Sf1|22668|splicing factor 1
mm9_v1_chr8_-_93837120_93837168	0.450504	GCAGCAU	AK029911|Rpgrip1l|244585|Rpgrip1-like	NM_173431|Rpgrip1l|244585|Rpgrip1-like	AJ344253|Rpgrip1l|244585|Rpgrip1-like
mm9_v1_chr14_+_49065971_49066097	0.435504	GCAGCAU	AK141246|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	NM_172600|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK032809|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK054494|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK040456|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK153648|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene	AK038175|6720456H20Rik|218989|RIKEN cDNA 6720456H20 gene
mm9_v1_chr7_+_116154373_116154494	0.435024	GCAGCAU	AK165720|Tub|22141|tubby candidate gene	NM_021885|Tub|22141|tubby candidate gene	U52433|Tub|22141|tubby candidate gene	BC096554|Tub|22141|tubby candidate gene	U54643|Tub|22141|tubby candidate gene
mm9_v1_chr1_+_168931547_168931719	0.428873	GCAGCAU	NM_001160261|Fam78b|226610|family with sequence similarity 78, member B	NM_001160262|Fam78b|226610|family with sequence similarity 78, member B	NM_175461|Fam78b|226610|family with sequence similarity 78, member B	BC132161|Fam78b|226610|family with sequence similarity 78, member B	BC132525|Fam78b|226610|family with sequence similarity 78, member B	AK144212|Fam78b|226610|family with sequence similarity 78, member B	AK047703|Fam78b|226610|family with sequence similarity 78, member B	BC066094|Fam78b|226610|family with sequence similarity 78, member B
mm9_v1_chr14_-_109313447_109313461	0.425619	GCAGCAU	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr2_+_31101302_31101442	0.424788	GCAGCAU	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr5_-_144493077_144493148	0.419896	GCAGCAU	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr10_+_83006673_83006768	0.416161	GCAGCAU	NM_001033375|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK145000|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK166233|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK043911|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene	AK038582|A230046K03Rik|319277|RIKEN cDNA A230046K03 gene
mm9_v1_chr3_-_19062922_19063101	0.411784	GCAGCAU	AK208595|Armc1|74252|armadillo repeat containing 1	AK213606|Armc1|74252|armadillo repeat containing 1	AK144184|Armc1|74252|armadillo repeat containing 1	AK079299|Armc1|74252|armadillo repeat containing 1	AK167233|Armc1|74252|armadillo repeat containing 1	BC051067|Armc1|74252|armadillo repeat containing 1	BC021451|Armc1|74252|armadillo repeat containing 1	NM_028840|Armc1|74252|armadillo repeat containing 1	AK009402|Armc1|74252|armadillo repeat containing 1	AK082783|Armc1|74252|armadillo repeat containing 1	AK145993|Armc1|74252|armadillo repeat containing 1
mm9_v1_chr14_-_62058627_62058783	0.410774	GCAGCAU	AF020772|Kpna3|16648|karyopherin (importin) alpha 3	AK011559|Kpna3|16648|karyopherin (importin) alpha 3	AK049373|Kpna3|16648|karyopherin (importin) alpha 3	BC026885|Kpna3|16648|karyopherin (importin) alpha 3	AK161664|Kpna3|16648|karyopherin (importin) alpha 3	NM_008466|Kpna3|16648|karyopherin (importin) alpha 3
mm9_v1_chr16_+_8830175_8830249	0.404049	GCAGCAU	AK007485|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	NM_001081400|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116778|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116780|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene
mm9_v1_chr2_+_3035629_3035684	0.40078	GCAGCAU	NM_001081161|Fam171a1|269233|family with sequence similarity 171, member A1	AK032237|Fam171a1|269233|family with sequence similarity 171, member A1
mm9_v1_chr2_-_114027142_114027208	0.399406	GCAGCAU	AK164226|Zfp770|228491|zinc finger protein 770	AK032578|Zfp770|228491|zinc finger protein 770	AK077547|Zfp770|228491|zinc finger protein 770	NM_175466|Zfp770|228491|zinc finger protein 770	AK044261|Zfp770|228491|zinc finger protein 770	AK043843|Zfp770|228491|zinc finger protein 770
mm9_v1_chr12_+_12268901_12269011	0.396906	GCAGCAU	NM_001146119|Fam49a|76820|family with sequence similarity 49, member A	NM_029758|Fam49a|76820|family with sequence similarity 49, member A	AK047142|Fam49a|76820|family with sequence similarity 49, member A	BC049664|Fam49a|76820|family with sequence similarity 49, member A
mm9_v1_chr8_-_24318788_24318925	0.393587	GCAGCAU	AK161270|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK077561|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK049675|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK045235|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK083589|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK169257|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK167876|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	NM_018743|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm9_v1_chr5_+_73882264_73882364	0.387185	GCAGCAU	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr2_+_109533719_109533771	0.387025	GCAGCAU	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr15_-_36212893_36212934	0.384904	GCAGCAU	NM_013923|Rnf19a|30945|ring finger protein 19A
mm9_v1_chr3_-_68930928_68931049	0.376964	GCAGCAU	BC052162|Kpna4|16649|karyopherin (importin) alpha 4	NM_008467|Kpna4|16649|karyopherin (importin) alpha 4	AK147920|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr9_+_122026378_122026421	0.373029	GCAGCAU	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr15_+_89041957_89042070	0.372674	GCAGCAU	AK084684|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_026813|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	NM_027805|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK083335|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	BC024879|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2	AK018403|Ppp6r2|71474|protein phosphatase 6, regulatory subunit 2
mm9_v1_chr11_-_116442760_116442770	0.370038	GCAGCAU	AK129431|Ube2o|217342|ubiquitin-conjugating enzyme E2O	NM_173755|Ube2o|217342|ubiquitin-conjugating enzyme E2O
mm9_v1_chr2_+_4073908_4073934	0.365712	GCAGCAU	NM_172475|Frmd4a|209630|FERM domain containing 4A	AK034706|Frmd4a|209630|FERM domain containing 4A	BC058672|Frmd4a|209630|FERM domain containing 4A	AK163887|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr14_-_21871647_21871707	0.358846	GCAGCAU	AF242857|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit	NM_018829|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr1_+_65233222_65233323	0.352374	GCAGCAU	AK139116|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	NM_011086|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK165350|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK080527|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AF102777|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK143565|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing	AK173077|Pikfyve|18711|phosphoinositide kinase, FYVE finger containing
mm9_v1_chr11_-_120209770_120209811	0.350582	GCAGCAU	M21495|Actg1|11465|actin, gamma, cytoplasmic 1	BC099371|Actg1|11465|actin, gamma, cytoplasmic 1	BC003337|Actg1|11465|actin, gamma, cytoplasmic 1	BC018571|Actg1|11465|actin, gamma, cytoplasmic 1	BC021796|Actg1|11465|actin, gamma, cytoplasmic 1	BC023248|Actg1|11465|actin, gamma, cytoplasmic 1	NM_009609|Actg1|11465|actin, gamma, cytoplasmic 1	AF195094|Actg1|11465|actin, gamma, cytoplasmic 1	AK149927|Actg1|11465|actin, gamma, cytoplasmic 1	AK150209|Actg1|11465|actin, gamma, cytoplasmic 1	AK162157|Actg1|11465|actin, gamma, cytoplasmic 1	AK076081|Actg1|11465|actin, gamma, cytoplasmic 1	AK087983|Actg1|11465|actin, gamma, cytoplasmic 1	AK157726|Actg1|11465|actin, gamma, cytoplasmic 1	AK012251|Actg1|11465|actin, gamma, cytoplasmic 1	AK152202|Actg1|11465|actin, gamma, cytoplasmic 1	AK153446|Actg1|11465|actin, gamma, cytoplasmic 1	AK159867|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr2_+_69561103_69561149	0.349863	GCAGCAU	AK135178|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC150694|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK134121|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	NM_001081086|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	BC027420|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr14_+_28435613_28435695	0.347355	GCAGCAU	AK147213|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	BC056760|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	NM_177814|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2	AK032385|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr16_+_35983402_35983472	0.341607	GCAGCAU	AK169464|Kpna1|16646|karyopherin (importin) alpha 1	AK169311|Kpna1|16646|karyopherin (importin) alpha 1	AK169348|Kpna1|16646|karyopherin (importin) alpha 1	AK028307|Kpna1|16646|karyopherin (importin) alpha 1	AK154800|Kpna1|16646|karyopherin (importin) alpha 1	AK028259|Kpna1|16646|karyopherin (importin) alpha 1	NM_008465|Kpna1|16646|karyopherin (importin) alpha 1	U20619|Kpna1|16646|karyopherin (importin) alpha 1	BC006771|Kpna1|16646|karyopherin (importin) alpha 1
mm9_v1_chr1_+_36125177_36125272	0.332217	GCAGCAU	AK144809|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	BC052316|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	NM_015818|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	AB024566|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1
mm9_v1_chr11_-_96638811_96638880	0.331438	GCAGCAU	AK020952|Snx11|74479|sorting nexin 11	BC014719|Snx11|74479|sorting nexin 11	AK037747|Snx11|74479|sorting nexin 11	AK042409|Snx11|74479|sorting nexin 11	AK076332|Snx11|74479|sorting nexin 11	NM_001163389|Snx11|74479|sorting nexin 11	NM_028965|Snx11|74479|sorting nexin 11
mm9_v1_chr2_+_109532592_109532697	0.326817	GCAGCAU	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr10_+_7400978_7401034	0.320167	GCAGCAU	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chr9_-_99469275_99469317	0.319895	GCAGCAU	BC038866|Armc8|74125|armadillo repeat containing 8	AK004793|Armc8|74125|armadillo repeat containing 8	NM_001166138|Armc8|74125|armadillo repeat containing 8	NM_028768|Armc8|74125|armadillo repeat containing 8
mm9_v1_chr18_-_38129384_38129452	0.314713	GCAGCAU	BC057367|Fchsd1|319262|FCH and double SH3 domains 1	NM_175684|Fchsd1|319262|FCH and double SH3 domains 1	BC052886|Fchsd1|319262|FCH and double SH3 domains 1	AK154732|Fchsd1|319262|FCH and double SH3 domains 1
mm9_v1_chr9_+_3532302_3532353	0.313053	GCAGCAU	NM_001033322|Gucy1a2|234889|guanylate cyclase 1, soluble, alpha 2
mm9_v1_chr16_+_58408609_58408667	0.312475	GCAGCAU	BC066097|Dcbld2|73379|discoidin, CUB and LCCL domain containing 2	NM_028523|Dcbld2|73379|discoidin, CUB and LCCL domain containing 2
mm9_v1_chr8_+_96334452_96334737	0.310555	GCAGCAU	AK160434|Gnao1|14681|guanine nucleotide binding protein, alpha O	AK035907|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_001113384|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_010308|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr4_+_6292817_6292904	0.306949	GCAGCAU	AK169415|Sdcbp|53378|syndecan binding protein	NM_001098227|Sdcbp|53378|syndecan binding protein	NM_016807|Sdcbp|53378|syndecan binding protein	AK033412|Sdcbp|53378|syndecan binding protein	AF003693|Sdcbp|53378|syndecan binding protein	AK150721|Sdcbp|53378|syndecan binding protein	AK152080|Sdcbp|53378|syndecan binding protein	AK159677|Sdcbp|53378|syndecan binding protein	AK150623|Sdcbp|53378|syndecan binding protein	AK152552|Sdcbp|53378|syndecan binding protein	AK153112|Sdcbp|53378|syndecan binding protein	AK169219|Sdcbp|53378|syndecan binding protein	AK045668|Sdcbp|53378|syndecan binding protein	AK168004|Sdcbp|53378|syndecan binding protein	AK028429|Sdcbp|53378|syndecan binding protein	AK146085|Sdcbp|53378|syndecan binding protein	AK150544|Sdcbp|53378|syndecan binding protein	AK150996|Sdcbp|53378|syndecan binding protein	AK151050|Sdcbp|53378|syndecan binding protein	AK152017|Sdcbp|53378|syndecan binding protein	AK152434|Sdcbp|53378|syndecan binding protein	AK153042|Sdcbp|53378|syndecan binding protein	AK159538|Sdcbp|53378|syndecan binding protein	AK169687|Sdcbp|53378|syndecan binding protein	AK171162|Sdcbp|53378|syndecan binding protein	AK150707|Sdcbp|53378|syndecan binding protein	AK152001|Sdcbp|53378|syndecan binding protein	AK152577|Sdcbp|53378|syndecan binding protein	AK152855|Sdcbp|53378|syndecan binding protein	AK152109|Sdcbp|53378|syndecan binding protein	AK150801|Sdcbp|53378|syndecan binding protein	AK014678|Sdcbp|53378|syndecan binding protein	AK150321|Sdcbp|53378|syndecan binding protein	AK150661|Sdcbp|53378|syndecan binding protein	AK150736|Sdcbp|53378|syndecan binding protein	AK159124|Sdcbp|53378|syndecan binding protein	AK165657|Sdcbp|53378|syndecan binding protein	AK167513|Sdcbp|53378|syndecan binding protein	AK168777|Sdcbp|53378|syndecan binding protein	BC019400|Sdcbp|53378|syndecan binding protein	AK150278|Sdcbp|53378|syndecan binding protein	AF077527|Sdcbp|53378|syndecan binding protein	AK159323|Sdcbp|53378|syndecan binding protein
mm9_v1_chr11_-_116274264_116274379	0.303395	GCAGCAU	AK011693|Rnf157|217340|ring finger protein 157	NM_027258|Rnf157|217340|ring finger protein 157
mm9_v1_chr9_+_21351307_21351499	0.298635	GCAGCAU	NM_021531|Carm1|59035|coactivator-associated arginine methyltransferase 1	NM_153141|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC036974|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158242|Carm1|59035|coactivator-associated arginine methyltransferase 1	BC071267|Carm1|59035|coactivator-associated arginine methyltransferase 1	AF117887|Carm1|59035|coactivator-associated arginine methyltransferase 1	AK158757|Carm1|59035|coactivator-associated arginine methyltransferase 1
mm9_v1_chr15_-_81702298_81702350	0.296633	GCAGCAU	AK163247|Phf5a|68479|PHD finger protein 5A	AK143590|Phf5a|68479|PHD finger protein 5A	NM_026737|Phf5a|68479|PHD finger protein 5A	AK167955|Phf5a|68479|PHD finger protein 5A	BC025161|Phf5a|68479|PHD finger protein 5A	AK003520|Phf5a|68479|PHD finger protein 5A	AF479288|Phf5a|68479|PHD finger protein 5A	AK167932|Phf5a|68479|PHD finger protein 5A
mm9_v1_chr17_-_79135885_79135936	0.293179	GCAGCAU	BC090968|Strn|268980|striatin, calmodulin binding protein	NM_011500|Strn|268980|striatin, calmodulin binding protein	AK051549|Strn|268980|striatin, calmodulin binding protein
mm9_v1_chr18_+_54021746_54021814	0.29099	GCAGCAU	AK049379|Csnk1g3|70425|casein kinase 1, gamma 3	NM_152809|Csnk1g3|70425|casein kinase 1, gamma 3	AK080491|Csnk1g3|70425|casein kinase 1, gamma 3
mm9_v1_chr1_-_63160764_63160840	0.283727	GCAGCAU	AK049468|Ino80d|227195|INO80 complex subunit D	NM_001081436|Ino80d|227195|INO80 complex subunit D	NM_001114609|Ino80d|227195|INO80 complex subunit D
mm9_v1_chr7_+_87414540_87414576	0.283466	GCAGCAU	AK032076|Vps33b|233405|vacuolar protein sorting 33B (yeast)	NM_178070|Vps33b|233405|vacuolar protein sorting 33B (yeast)	BC011059|Vps33b|233405|vacuolar protein sorting 33B (yeast)
mm9_v1_chr13_-_46060325_46060353	0.282192	GCAGCAU	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr13_-_36826245_36826363	0.281155	GCAGCAU	AK161859|Nrn1|68404|neuritin 1	BC035531|Nrn1|68404|neuritin 1	NM_153529|Nrn1|68404|neuritin 1
mm9_v1_chr9_+_37296867_37296905	0.279925	GCAGCAU	BC066002|BC024479|235184|cDNA sequence BC024479	NM_146222|BC024479|235184|cDNA sequence BC024479
mm9_v1_chrX_-_71330931_71331012	0.275762	GCAGCAU	AF158181|Mecp2|17257|methyl CpG binding protein 2	NM_010788|Mecp2|17257|methyl CpG binding protein 2	AK041453|Mecp2|17257|methyl CpG binding protein 2	BC027153|Mecp2|17257|methyl CpG binding protein 2	AK158664|Mecp2|17257|methyl CpG binding protein 2	NM_001081979|Mecp2|17257|methyl CpG binding protein 2
mm9_v1_chr19_+_5490454_5490570	0.27568	GCAGCAU	NM_007687|Cfl1|12631|cofilin 1, non-muscle	AK020471|Cfl1|12631|cofilin 1, non-muscle	D00472|Cfl1|12631|cofilin 1, non-muscle	AK088633|Cfl1|12631|cofilin 1, non-muscle	AK088793|Cfl1|12631|cofilin 1, non-muscle	AK050651|Cfl1|12631|cofilin 1, non-muscle	AK167795|Cfl1|12631|cofilin 1, non-muscle	AK013943|Cfl1|12631|cofilin 1, non-muscle	BC058726|Cfl1|12631|cofilin 1, non-muscle	BC094357|Cfl1|12631|cofilin 1, non-muscle	BC046225|Cfl1|12631|cofilin 1, non-muscle
mm9_v1_chr11_+_108781661_108781720	0.272062	GCAGCAU	AK142333|Axin2|12006|axin2	NM_015732|Axin2|12006|axin2	BC057338|Axin2|12006|axin2	AK049192|Axin2|12006|axin2
mm9_v1_chr4_+_114079291_114079328	0.271775	GCAGCAU	NM_001085549|Gm12824|666048|predicted gene 12824
mm9_v1_chr1_-_113761344_113761496	0.270497	GCAGCAU	AK164854|Dsel|319901|dermatan sulfate epimerase-like	AK033983|Dsel|319901|dermatan sulfate epimerase-like	NM_001081316|Dsel|319901|dermatan sulfate epimerase-like
mm9_v1_chrX_-_161764912_161765057	0.26938	GCAGCAU	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr6_-_91361356_91361402	0.266368	GCAGCAU	BC049093|Wnt7a|22421|wingless-related MMTV integration site 7A	BC057586|Wnt7a|22421|wingless-related MMTV integration site 7A	AK004683|Wnt7a|22421|wingless-related MMTV integration site 7A	NM_009527|Wnt7a|22421|wingless-related MMTV integration site 7A
mm9_v1_chr5_+_28643698_28643741	0.262869	GCAGCAU	NM_028234|Rbm33|381626|RNA binding motif protein 33	AK014289|Rbm33|381626|RNA binding motif protein 33
mm9_v1_chr2_+_119373442_119373461	0.260122	GCAGCAU	NM_019769|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK156588|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK045920|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK168284|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene	AK075723|1500003O03Rik|56398|RIKEN cDNA 1500003O03 gene
mm9_v1_chr3_+_138405156_138405310	0.260067	GCAGCAU	NM_019571|Tspan5|56224|tetraspanin 5	AF121344|Tspan5|56224|tetraspanin 5	AK013350|Tspan5|56224|tetraspanin 5	BC058695|Tspan5|56224|tetraspanin 5	BC046784|Tspan5|56224|tetraspanin 5
mm9_v1_chr11_-_115465172_115465241	0.256098	GCAGCAU	BC056424|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC110676|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK082327|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK147882|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK132183|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK031086|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	AK122212|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	BC085617|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3	NM_173048|Gga3|260302|golgi associated, gamma adaptin ear containing, ARF binding protein 3
mm9_v1_chr6_-_119058206_119058206	0.252515	GCAGCAU	BC138031|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	BC145103|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	BC145104|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	BC145105|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_001159533|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_001159534|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit	NM_001159535|Cacna1c|12288|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm9_v1_chr9_-_57315800_57315896	0.251434	GCAGCAU	AF241833|Scamp5|56807|secretory carrier membrane protein 5	BC018613|Scamp5|56807|secretory carrier membrane protein 5	NM_020270|Scamp5|56807|secretory carrier membrane protein 5
mm9_v1_chrX_+_100551808_100551914	0.246286	GCAGCAU	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr1_-_54983211_54983245	0.236653	GCAGCAU	AK038343|Ankrd44|329154|ankyrin repeat domain 44	NM_001081433|Ankrd44|329154|ankyrin repeat domain 44
mm9_v1_chr2_+_97307652_97307938	0.231162	GCAGCAU	AK032467|Lrrc4c|241568|leucine rich repeat containing 4C	AK032088|Lrrc4c|241568|leucine rich repeat containing 4C	NM_178725|Lrrc4c|241568|leucine rich repeat containing 4C	BC094588|Lrrc4c|241568|leucine rich repeat containing 4C
mm9_v1_chr11_-_99092319_99092333	0.231029	GCAGCAU	BC065043|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	NM_020618|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm9_v1_chr15_+_76181718_76181819	0.230653	GCAGCAU	NM_001164607|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_001164608|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_026859|Maf1|68877|MAF1 homolog (S. cerevisiae)	BC016260|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK154047|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK042913|Maf1|68877|MAF1 homolog (S. cerevisiae)
mm9_v1_chrX_+_72759635_72759692	0.227839	GCAGCAU	NM_011692|Vbp1|22327|von Hippel-Lindau binding protein 1	AK167742|Vbp1|22327|von Hippel-Lindau binding protein 1	AK077923|Vbp1|22327|von Hippel-Lindau binding protein 1	AK002282|Vbp1|22327|von Hippel-Lindau binding protein 1	AK008847|Vbp1|22327|von Hippel-Lindau binding protein 1	AK051431|Vbp1|22327|von Hippel-Lindau binding protein 1	AK151527|Vbp1|22327|von Hippel-Lindau binding protein 1	AK159284|Vbp1|22327|von Hippel-Lindau binding protein 1	AK167064|Vbp1|22327|von Hippel-Lindau binding protein 1	AK169185|Vbp1|22327|von Hippel-Lindau binding protein 1	AK153069|Vbp1|22327|von Hippel-Lindau binding protein 1	U96760|Vbp1|22327|von Hippel-Lindau binding protein 1	BC132169|Vbp1|22327|von Hippel-Lindau binding protein 1	BC132171|Vbp1|22327|von Hippel-Lindau binding protein 1
mm9_v1_chr10_-_127058199_127058205	0.226641	GCAGCAU	AK078273|Lrp1|16971|low density lipoprotein receptor-related protein 1	NM_008512|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr3_+_108394195_108394337	0.226065	GCAGCAU	NM_181400|Wdr47|99512|WD repeat domain 47	AK047357|Wdr47|99512|WD repeat domain 47	AK163422|Wdr47|99512|WD repeat domain 47	BC040337|Wdr47|99512|WD repeat domain 47
mm9_v1_chr2_+_4322020_4322021	0.224498	GCAGCAU	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr2_-_103637096_103637239	0.21934	GCAGCAU	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr9_+_95459990_95460369	0.216029	GCAGCAU	AY424298|Paqr9|75552|progestin and adipoQ receptor family member IX	NM_198414|Paqr9|75552|progestin and adipoQ receptor family member IX	AK133021|Paqr9|75552|progestin and adipoQ receptor family member IX
mm9_v1_chr3_+_103379203_103379300	0.215366	GCAGCAU	NM_018800|Syt6|54524|synaptotagmin VI	BC050760|Syt6|54524|synaptotagmin VI	AB026803|Syt6|54524|synaptotagmin VI	AB026809|Syt6|54524|synaptotagmin VI	AB026810|Syt6|54524|synaptotagmin VI
mm9_v1_chr9_+_72380046_72380064	0.214703	GCAGCAU	AK090370|Rfx7|319758|regulatory factor X, 7	NM_001033536|Rfx7|319758|regulatory factor X, 7	AK144999|Rfx7|319758|regulatory factor X, 7
mm9_v1_chr11_-_70847078_70847118	0.212989	GCAGCAU	NM_134022|6330403K07Rik|103712|RIKEN cDNA 6330403K07 gene
mm9_v1_chr2_-_39081799_39081884	0.212106	GCAGCAU	AK002764|Ppp6c|67857|protein phosphatase 6, catalytic subunit	AK009104|Ppp6c|67857|protein phosphatase 6, catalytic subunit	NM_024209|Ppp6c|67857|protein phosphatase 6, catalytic subunit	BC002223|Ppp6c|67857|protein phosphatase 6, catalytic subunit
mm9_v1_chr1_-_58642994_58643176	0.207781	GCAGCAU	AK052638|Fam126b|213056|family with sequence similarity 126, member B	BC068302|Fam126b|213056|family with sequence similarity 126, member B	AK144602|Fam126b|213056|family with sequence similarity 126, member B	BC049806|Fam126b|213056|family with sequence similarity 126, member B	AK168372|Fam126b|213056|family with sequence similarity 126, member B	NM_172513|Fam126b|213056|family with sequence similarity 126, member B
mm9_v1_chr5_+_67651890_67652024	0.197758	GCAGCAU	AK012413|Tmem33|67878|transmembrane protein 33	NM_028975|Tmem33|67878|transmembrane protein 33	NM_030108|Tmem33|67878|transmembrane protein 33	AK032555|Tmem33|67878|transmembrane protein 33	AK005493|Tmem33|67878|transmembrane protein 33	AK007750|Tmem33|67878|transmembrane protein 33	AK017281|Tmem33|67878|transmembrane protein 33	AK153441|Tmem33|67878|transmembrane protein 33	AK007607|Tmem33|67878|transmembrane protein 33	BC005562|Tmem33|67878|transmembrane protein 33	AK165369|Tmem33|67878|transmembrane protein 33
mm9_v1_chr8_+_109817355_109817761	0.197457	GCAGCAU	AK045123|Nfat5|54446|nuclear factor of activated T-cells 5	AK134022|Nfat5|54446|nuclear factor of activated T-cells 5	NM_018823|Nfat5|54446|nuclear factor of activated T-cells 5	NM_133957|Nfat5|54446|nuclear factor of activated T-cells 5	AK052632|Nfat5|54446|nuclear factor of activated T-cells 5	AF162853|Nfat5|54446|nuclear factor of activated T-cells 5	AK172011|Nfat5|54446|nuclear factor of activated T-cells 5	AF369980|Nfat5|54446|nuclear factor of activated T-cells 5	AF453571|Nfat5|54446|nuclear factor of activated T-cells 5
mm9_v1_chr5_-_3803095_3803144	0.196652	GCAGCAU	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr2_-_163470870_163470922	0.195377	GCAGCAU	NM_012032|Serinc3|26943|serine incorporator 3
mm9_v1_chr6_+_143115732_143115821	0.190351	GCAGCAU	AK051039|Etnk1|75320|ethanolamine kinase 1	AK044502|Etnk1|75320|ethanolamine kinase 1	NM_029250|Etnk1|75320|ethanolamine kinase 1	AK016135|Etnk1|75320|ethanolamine kinase 1	AK031560|Etnk1|75320|ethanolamine kinase 1	AK033268|Etnk1|75320|ethanolamine kinase 1	AK164928|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr17_+_3114963_3115105	0.189594	GCAGCAU	AK157957|Scaf8|106583|SR-related CTD-associated factor 8	AK042381|Scaf8|106583|SR-related CTD-associated factor 8	NM_134123|Scaf8|106583|SR-related CTD-associated factor 8	BC075621|Scaf8|106583|SR-related CTD-associated factor 8	AK122451|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr2_+_76244578_76244594	0.187647	GCAGCAU	AK044411|Osbpl6|99031|oxysterol binding protein-like 6	NM_145525|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr8_+_81552335_81552485	0.185937	GCAGCAU	BC094552|Zfp827|622675|zinc finger protein 827	NM_178267|Zfp827|622675|zinc finger protein 827	BC151183|Zfp827|622675|zinc finger protein 827	AK154905|Zfp827|622675|zinc finger protein 827
mm9_v1_chr2_-_103637795_103637829	0.184498	GCAGCAU	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr12_-_119539909_119539930	0.182612	GCAGCAU	NM_001166385|Sp4|20688|trans-acting transcription factor 4	NM_009239|Sp4|20688|trans-acting transcription factor 4
mm9_v1_chr4_+_34497840_34497946	0.181242	GCAGCAU	NM_001007589|Akirin2|433693|akirin 2	BC082305|Akirin2|433693|akirin 2
mm9_v1_chr1_-_171899306_171899335	0.177375	GCAGCAU	Y15733|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	AK077914|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	NM_010476|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7
mm9_v1_chr8_+_48618988_48619067	0.173462	GCAGCAU	NM_203507|Rwdd4a|192174|RWD domain containing 4A	AK005797|Rwdd4a|192174|RWD domain containing 4A	AK016505|Rwdd4a|192174|RWD domain containing 4A	AK004597|Rwdd4a|192174|RWD domain containing 4A	BC016198|Rwdd4a|192174|RWD domain containing 4A
mm9_v1_chr12_+_60167873_60167985	0.170305	GCAGCAU	NM_008891|Pnn|18949|pinin	AK051640|Pnn|18949|pinin	AK009055|Pnn|18949|pinin	AK085295|Pnn|18949|pinin	AK050669|Pnn|18949|pinin	AK157587|Pnn|18949|pinin	AK028219|Pnn|18949|pinin	AK161109|Pnn|18949|pinin	AK160616|Pnn|18949|pinin	BC132571|Pnn|18949|pinin	BC138014|Pnn|18949|pinin	Y08701|Pnn|18949|pinin	AK030978|Pnn|18949|pinin
mm9_v1_chr8_+_108042645_108042656	0.169309	GCAGCAU	AK155153|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2	NM_008289|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2	BC014753|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2	BC066209|Hsd11b2|15484|hydroxysteroid 11-beta dehydrogenase 2
mm9_v1_chr6_+_92041408_92041534	0.167541	GCAGCAU	NM_011630|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2	AK157305|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2
mm9_v1_chr18_+_68459987_68460081	0.16674	GCAGCAU	AK084393|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_001170953|Rnmt|67897|RNA (guanine-7-) methyltransferase	NM_026440|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK011300|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK082331|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK031780|Rnmt|67897|RNA (guanine-7-) methyltransferase	AK015403|Rnmt|67897|RNA (guanine-7-) methyltransferase	BC021794|Rnmt|67897|RNA (guanine-7-) methyltransferase
mm9_v1_chr1_+_87690003_87690086	0.164573	GCAGCAU	NM_133781|Cab39|12283|calcium binding protein 39	AK144665|Cab39|12283|calcium binding protein 39
mm9_v1_chr13_+_55050729_55050861	0.162335	GCAGCAU	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr19_-_44144244_44144286	0.160628	GCAGCAU	AK145990|Erlin1|226144|ER lipid raft associated 1	NM_001164359|Erlin1|226144|ER lipid raft associated 1	NM_001164360|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr2_-_165151935_165152001	0.159132	GCAGCAU	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr19_+_45438212_45438344	0.158703	GCAGCAU	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr10_-_126700387_126700418	0.158259	GCAGCAU	AK220479|Kif5a|16572|kinesin family member 5A	AK140769|Kif5a|16572|kinesin family member 5A	NM_001039000|Kif5a|16572|kinesin family member 5A	NM_008447|Kif5a|16572|kinesin family member 5A
mm9_v1_chr14_-_70205351_70205356	0.15784	GCAGCAU	AK021405|Rhobtb2|246710|Rho-related BTB domain containing 2	NM_153514|Rhobtb2|246710|Rho-related BTB domain containing 2
mm9_v1_chr3_+_88987108_88987146	0.154615	GCAGCAU	BC068123|Fam189b|68521|family with sequence similarity 189, member B	BC088990|Fam189b|68521|family with sequence similarity 189, member B	NM_001014995|Fam189b|68521|family with sequence similarity 189, member B
mm9_v1_chr8_+_97296066_97296079	0.150408	GCAGCAU	NM_009142|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr10_+_92623587_92623703	0.148003	GCAGCAU	AK078325|Cdk17|237459|cyclin-dependent kinase 17	NM_146239|Cdk17|237459|cyclin-dependent kinase 17	BC064815|Cdk17|237459|cyclin-dependent kinase 17
mm9_v1_chr19_+_23833310_23833547	0.147347	GCAGCAU	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr6_+_122770201_122770233	0.144162	GCAGCAU	AF253052|Foxj2|60611|forkhead box J2	NM_021899|Foxj2|60611|forkhead box J2	BC038069|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr6_-_122287014_122287032	0.1424	GCAGCAU	U63386|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_001042623|Phc1|13619|polyhomeotic-like 1 (Drosophila)	NM_007905|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr12_-_100139666_100139693	0.139473	GCAGCAU	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr19_+_30104914_30105033	0.139425	GCAGCAU	AK082518|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK031036|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK042321|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK051743|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK080925|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	AK041564|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	BC060241|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2	NM_144873|Uhrf2|109113|ubiquitin-like, containing PHD and RING finger domains 2
mm9_v1_chr14_-_46008425_46008617	0.139094	GCAGCAU	BC092047|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	BC031116|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK018499|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK050266|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AJ001006|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	NM_019425|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007722|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK167870|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK168074|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007647|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK008566|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK002466|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK028693|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007764|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK011098|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1
mm9_v1_chr9_+_100544034_100544056	0.138291	GCAGCAU	AK052003|Stag1|20842|stromal antigen 1	BC062954|Stag1|20842|stromal antigen 1	NM_009282|Stag1|20842|stromal antigen 1	AK017978|Stag1|20842|stromal antigen 1
mm9_v1_chr12_-_86311718_86311851	0.138222	GCAGCAU	BC057351|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	BC079590|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147878|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK154529|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	AK147491|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene	NM_178065|1110018G07Rik|68497|RIKEN cDNA 1110018G07 gene
mm9_v1_chr7_+_82600419_82600490	0.137935	GCAGCAU	NM_029332|Akap13|75547|A kinase (PRKA) anchor protein 13	AK157986|Akap13|75547|A kinase (PRKA) anchor protein 13	AK172125|Akap13|75547|A kinase (PRKA) anchor protein 13
mm9_v1_chr3_+_89324085_89324085	0.137056	GCAGCAU	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr13_+_49777464_49777562	0.135439	GCAGCAU	NM_172015|Iars|105148|isoleucine-tRNA synthetase	BC067029|Iars|105148|isoleucine-tRNA synthetase	AK087992|Iars|105148|isoleucine-tRNA synthetase	AK133856|Iars|105148|isoleucine-tRNA synthetase	AK136132|Iars|105148|isoleucine-tRNA synthetase
mm9_v1_chr17_+_46297980_46297995	0.133503	GCAGCAU	NM_001145979|Gtpbp2|56055|GTP binding protein 2	NM_019581|Gtpbp2|56055|GTP binding protein 2
mm9_v1_chr11_-_120685860_120685860	0.133266	GCAGCAU	NM_007988|Fasn|14104|fatty acid synthase
mm9_v1_chr19_+_8972532_8972606	0.132914	GCAGCAU	AK028655|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK030722|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK081915|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK149686|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC094437|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC117889|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	NM_008060|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	U92793|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	AK043606|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC128069|Ganab|14376|alpha glucosidase 2 alpha neutral subunit	BC117888|Ganab|14376|alpha glucosidase 2 alpha neutral subunit
mm9_v1_chr11_-_100981015_100981199	0.130999	GCAGCAU	AK194930|Fam134c|67998|family with sequence similarity 134, member C	AK016648|Fam134c|67998|family with sequence similarity 134, member C	AK160000|Fam134c|67998|family with sequence similarity 134, member C	BC016089|Fam134c|67998|family with sequence similarity 134, member C	AK151685|Fam134c|67998|family with sequence similarity 134, member C	AK004979|Fam134c|67998|family with sequence similarity 134, member C	NM_026501|Fam134c|67998|family with sequence similarity 134, member C	AK163482|Fam134c|67998|family with sequence similarity 134, member C	AK004960|Fam134c|67998|family with sequence similarity 134, member C	AK051025|Fam134c|67998|family with sequence similarity 134, member C	NM_028933|Fam134c|67998|family with sequence similarity 134, member C
mm9_v1_chr11_+_77851417_77851587	0.125891	GCAGCAU	AK170557|Flot2|14252|flotillin 2	NM_001040403|Flot2|14252|flotillin 2	NM_008028|Flot2|14252|flotillin 2	AK030199|Flot2|14252|flotillin 2	BC070423|Flot2|14252|flotillin 2	AK004589|Flot2|14252|flotillin 2	AK149530|Flot2|14252|flotillin 2	AK187814|Flot2|14252|flotillin 2	AK213895|Flot2|14252|flotillin 2
mm9_v1_chrX_-_101866402_101866402	0.12565	GCAGCAU	AK132304|Zdhhc15|108672|zinc finger, DHHC domain containing 15	NM_175358|Zdhhc15|108672|zinc finger, DHHC domain containing 15
mm9_v1_chr18_-_10029925_10030160	0.124723	GCAGCAU	AB034633|Usp14|59025|ubiquitin specific peptidase 14	BC050197|Usp14|59025|ubiquitin specific peptidase 14	AK045909|Usp14|59025|ubiquitin specific peptidase 14	BC005571|Usp14|59025|ubiquitin specific peptidase 14	AK029977|Usp14|59025|ubiquitin specific peptidase 14	AK160215|Usp14|59025|ubiquitin specific peptidase 14	AK011322|Usp14|59025|ubiquitin specific peptidase 14	AK172477|Usp14|59025|ubiquitin specific peptidase 14	AK170933|Usp14|59025|ubiquitin specific peptidase 14	NM_001038589|Usp14|59025|ubiquitin specific peptidase 14	NM_021522|Usp14|59025|ubiquitin specific peptidase 14
mm9_v1_chr5_+_151755181_151755278	0.123255	GCAGCAU	BC138258|Kl|16591|klotho	BC138259|Kl|16591|klotho	NM_013823|Kl|16591|klotho	AB005141|Kl|16591|klotho	AB010088|Kl|16591|klotho
mm9_v1_chr11_+_29072836_29072998	0.122505	GCAGCAU	NM_134034|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK090014|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK041513|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK044742|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK037253|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK165940|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK166627|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK129344|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	BC006870|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)
mm9_v1_chr9_-_110379093_110379197	0.120393	GCAGCAU	BC065167|Klhl18|270201|kelch-like 18 (Drosophila)	BC025563|Klhl18|270201|kelch-like 18 (Drosophila)	AK173029|Klhl18|270201|kelch-like 18 (Drosophila)	NM_177771|Klhl18|270201|kelch-like 18 (Drosophila)
mm9_v1_chr1_-_136131981_136132033	0.119617	GCAGCAU	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr6_-_51419881_51419892	0.116317	GCAGCAU	AK049771|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	AK137214|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_016806|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1	NM_182650|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr9_+_106073255_106073259	0.115984	GCAGCAU	AK037620|Wdr82|77305|WD repeat domain containing 82	AK035109|Wdr82|77305|WD repeat domain containing 82	AK149692|Wdr82|77305|WD repeat domain containing 82	AK159240|Wdr82|77305|WD repeat domain containing 82	AK172474|Wdr82|77305|WD repeat domain containing 82	NM_029896|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr1_-_13364092_13364163	0.115465	GCAGCAU	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr6_-_13627853_13628000	0.114674	GCAGCAU	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr15_-_79233664_79233756	0.110297	GCAGCAU	AK048138|Tmem184b|223693|transmembrane protein 184b	AK028196|Tmem184b|223693|transmembrane protein 184b	AK029129|Tmem184b|223693|transmembrane protein 184b	AK170086|Tmem184b|223693|transmembrane protein 184b	AK149366|Tmem184b|223693|transmembrane protein 184b	AK158789|Tmem184b|223693|transmembrane protein 184b	NM_172608|Tmem184b|223693|transmembrane protein 184b
mm9_v1_chr17_+_15841889_15842002	0.110142	GCAGCAU	AK042202|Chd1|12648|chromodomain helicase DNA binding protein 1	NM_007690|Chd1|12648|chromodomain helicase DNA binding protein 1	AK049686|Chd1|12648|chromodomain helicase DNA binding protein 1	AK140386|Chd1|12648|chromodomain helicase DNA binding protein 1	AK142471|Chd1|12648|chromodomain helicase DNA binding protein 1	AK021188|Chd1|12648|chromodomain helicase DNA binding protein 1
mm9_v1_chr9_+_65246294_65246323	0.107326	GCAGCAU	NM_001033158|Rasl12|70784|RAS-like, family 12	NM_001162923|Rasl12|70784|RAS-like, family 12	AK087136|Rasl12|70784|RAS-like, family 12	BC125036|Rasl12|70784|RAS-like, family 12
mm9_v1_chr12_-_56403949_56403990	0.106326	GCAGCAU	BC024754|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK028063|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AB041577|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK033405|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK163192|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	AK168298|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma	NM_021529|Ppp2r3c|59032|protein phosphatase 2, regulatory subunit B'', gamma
mm9_v1_chr2_+_75670230_75670233	0.103189	GCAGCAU	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr11_+_75401554_75401692	0.100879	GCAGCAU	AK144618|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152089|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK153569|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK167760|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK152874|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK165659|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168720|Pitpna|18738|phosphatidylinositol transfer protein, alpha	U96725|Pitpna|18738|phosphatidylinositol transfer protein, alpha	NM_008850|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK149745|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK151496|Pitpna|18738|phosphatidylinositol transfer protein, alpha	AK168187|Pitpna|18738|phosphatidylinositol transfer protein, alpha	BC056171|Pitpna|18738|phosphatidylinositol transfer protein, alpha
mm9_v1_chr11_-_68666619_68666656	0.0986034	GCAGCAU	AF323918|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	NM_023668|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr8_+_107800316_107800347	0.0946609	GCAGCAU	AK079536|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	BC027290|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AY459322|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AK053846|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	NM_030152|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm9_v1_chr11_-_97011025_97011025	0.0896304	GCAGCAU	BC057590|Tbkbp1|73174|TBK1 binding protein 1	NM_198100|Tbkbp1|73174|TBK1 binding protein 1
mm9_v1_chr11_-_59104252_59104253	0.0893585	GCAGCAU	NM_009522|Wnt3a|22416|wingless-related MMTV integration site 3A	X56842|Wnt3a|22416|wingless-related MMTV integration site 3A
mm9_v1_chr7_+_56214442_56214485	0.0879093	GCAGCAU	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr19_-_6996189_6996331	0.0877732	GCAGCAU	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr3_-_108218411_108218411	0.087324	GCAGCAU	AB028499|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_001004177|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_017392|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm9_v1_chr8_+_124254462_124254503	0.0871118	GCAGCAU	AB024449|Jph3|57340|junctophilin 3	NM_020605|Jph3|57340|junctophilin 3	AK046136|Jph3|57340|junctophilin 3	AK082880|Jph3|57340|junctophilin 3	AK045706|Jph3|57340|junctophilin 3	BC103682|Jph3|57340|junctophilin 3	BC104736|Jph3|57340|junctophilin 3	BC105307|Jph3|57340|junctophilin 3
mm9_v1_chr4_-_129055233_129055271	0.0830506	GCAGCAU	AK010736|Zbtb8a|73680|zinc finger and BTB domain containing 8a	NM_028603|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr2_+_127073631_127073743	0.0824257	GCAGCAU	AK165880|Tmem127|69470|transmembrane protein 127	AK030324|Tmem127|69470|transmembrane protein 127	BC049832|Tmem127|69470|transmembrane protein 127	NM_175145|Tmem127|69470|transmembrane protein 127	AK050216|Tmem127|69470|transmembrane protein 127
mm9_v1_chr4_+_153544821_153544830	0.0818037	GCAGCAU	NM_001162977|Megf6|230971|multiple EGF-like-domains 6
mm9_v1_chr1_+_107886982_107886982	0.0774431	GCAGCAU	AK046562|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122675|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122676|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr7_+_58877199_58877199	0.0737548	GCAGCAU	NM_080853|Slc17a6|140919|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6
mm9_v1_chrX_-_98417753_98417901	0.0695192	GCAGCAU	AK168604|Snx12|55988|sorting nexin 12	AK011257|Snx12|55988|sorting nexin 12	AK170403|Snx12|55988|sorting nexin 12	AK049561|Snx12|55988|sorting nexin 12	AK146833|Snx12|55988|sorting nexin 12	AF062484|Snx12|55988|sorting nexin 12	BC002009|Snx12|55988|sorting nexin 12	AK148235|Snx12|55988|sorting nexin 12	AK169569|Snx12|55988|sorting nexin 12	AK170992|Snx12|55988|sorting nexin 12	AK131838|Snx12|55988|sorting nexin 12	NM_001110310|Snx12|55988|sorting nexin 12	NM_001110311|Snx12|55988|sorting nexin 12	NM_018875|Snx12|55988|sorting nexin 12
mm9_v1_chr4_-_44181148_44181210	0.0653324	GCAGCAU	AK044324|Rnf38|73469|ring finger protein 38	NM_001038993|Rnf38|73469|ring finger protein 38	AK147608|Rnf38|73469|ring finger protein 38
mm9_v1_chr17_-_75951137_75951285	0.0649568	GCAGCAU	AK167224|Fam98a|72722|family with sequence similarity 98, member A	BC004626|Fam98a|72722|family with sequence similarity 98, member A	AK146955|Fam98a|72722|family with sequence similarity 98, member A	AK046481|Fam98a|72722|family with sequence similarity 98, member A	AK012997|Fam98a|72722|family with sequence similarity 98, member A	AK146215|Fam98a|72722|family with sequence similarity 98, member A	AK146761|Fam98a|72722|family with sequence similarity 98, member A	NM_133747|Fam98a|72722|family with sequence similarity 98, member A
mm9_v1_chr11_+_49660238_49660298	0.0628652	GCAGCAU	NM_001163671|Mapk9|26420|mitogen-activated protein kinase 9	NM_001163672|Mapk9|26420|mitogen-activated protein kinase 9	NM_016961|Mapk9|26420|mitogen-activated protein kinase 9	NM_207692|Mapk9|26420|mitogen-activated protein kinase 9	AK031959|Mapk9|26420|mitogen-activated protein kinase 9	AK090057|Mapk9|26420|mitogen-activated protein kinase 9	AK145083|Mapk9|26420|mitogen-activated protein kinase 9	BC028341|Mapk9|26420|mitogen-activated protein kinase 9
mm9_v1_chr6_-_39156706_39156787	0.0624102	GCAGCAU	AK136238|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042834|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	NM_001033430|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)	AK042327|Jhdm1d|338523|jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
mm9_v1_chr17_-_29144679_29144968	0.06206	GCAGCAU	AK184259|Stk38|106504|serine/threonine kinase 38	AY292399|Stk38|106504|serine/threonine kinase 38	AK020024|Stk38|106504|serine/threonine kinase 38	AK133644|Stk38|106504|serine/threonine kinase 38	AK164081|Stk38|106504|serine/threonine kinase 38	AK084433|Stk38|106504|serine/threonine kinase 38	BC009658|Stk38|106504|serine/threonine kinase 38	NM_134115|Stk38|106504|serine/threonine kinase 38	AK035731|Stk38|106504|serine/threonine kinase 38	AK080179|Stk38|106504|serine/threonine kinase 38
mm9_v1_chr5_-_33196860_33196908	0.0608294	GCAGCAU	AK134346|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene	NM_194340|C330019G07Rik|215476|RIKEN cDNA C330019G07 gene
mm9_v1_chr17_+_36974084_36974137	0.0584221	GCAGCAU	AK171019|Trim26|22670|tripartite motif-containing 26	NM_001025599|Trim26|22670|tripartite motif-containing 26	AK042252|Trim26|22670|tripartite motif-containing 26	BC037110|Trim26|22670|tripartite motif-containing 26
mm9_v1_chr1_-_36502079_36502124	0.0579027	GCAGCAU	AK142024|Lman2l|214895|lectin, mannose-binding 2-like	BC046969|Lman2l|214895|lectin, mannose-binding 2-like	NM_001013374|Lman2l|214895|lectin, mannose-binding 2-like	BC027226|Lman2l|214895|lectin, mannose-binding 2-like	AK158015|Lman2l|214895|lectin, mannose-binding 2-like
mm9_v1_chr5_+_151476361_151476427	0.0578576	GCAGCAU	AY102267|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)	NM_175310|Pds5b|100710|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)
mm9_v1_chr12_-_42212337_42212337	0.057549	GCAGCAU	BC069041|Lrrn3|16981|leucine rich repeat protein 3, neuronal	NM_010733|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr15_+_101904203_101904238	0.0542998	GCAGCAU	NM_145625|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr6_+_124948627_124948627	0.0540506	GCAGCAU	AK148352|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145926|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr15_-_93167308_93167408	0.0532433	GCAGCAU	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr4_+_129138915_129138922	0.0464598	GCAGCAU	BC049111|Bsdc1|100383|BSD domain containing 1	NM_133889|Bsdc1|100383|BSD domain containing 1
mm9_v1_chr7_+_146434362_146434395	0.0422792	GCAGCAU	BC116669|Pwwp2b|101631|PWWP domain containing 2B	NM_001033206|Pwwp2b|101631|PWWP domain containing 2B	NM_001098636|Pwwp2b|101631|PWWP domain containing 2B	AK158245|Pwwp2b|101631|PWWP domain containing 2B	BC116720|Pwwp2b|101631|PWWP domain containing 2B	AK165809|Pwwp2b|101631|PWWP domain containing 2B
mm9_v1_chr15_+_74346624_74346672	0.0409287	GCAGCAU	AK147607|Bai1|107831|brain-specific angiogenesis inhibitor 1	NM_174991|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147456|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147459|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr5_-_141306258_141306416	0.0393665	GCAGCAU	BC111810|Gna12|14673|guanine nucleotide binding protein, alpha 12	M63659|Gna12|14673|guanine nucleotide binding protein, alpha 12	NM_010302|Gna12|14673|guanine nucleotide binding protein, alpha 12
mm9_v1_chr17_+_31194623_31194718	0.03704	GCAGCAU	NM_009593|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AF323659|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	Z48745|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	U34920|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	BC119471|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AK037433|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1
mm9_v1_chr9_+_65062496_65062582	0.0341157	GCAGCAU	AK133475|Parp16|214424|poly (ADP-ribose) polymerase family, member 16	NM_177460|Parp16|214424|poly (ADP-ribose) polymerase family, member 16	BC055447|Parp16|214424|poly (ADP-ribose) polymerase family, member 16	AK169866|Parp16|214424|poly (ADP-ribose) polymerase family, member 16
mm9_v1_chr3_+_51219882_51219968	0.0334928	GCAGCAU	NM_053089|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr1_-_134539434_134539434	0.0332279	GCAGCAU	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr12_+_111723922_111723992	0.0316123	GCAGCAU	AK031584|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081457|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_001081458|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	NM_012023|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	BC003979|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr1_-_158135155_158135155	0.0299232	GCAGCAU	AK039197|Fam163a|329274|family with sequence similarity 163, member A	NM_177838|Fam163a|329274|family with sequence similarity 163, member A
mm9_v1_chr15_-_58913543_58913652	0.0297088	GCAGCAU	BC024131|Mtss1|211401|metastasis suppressor 1	AK083756|Mtss1|211401|metastasis suppressor 1	AK046628|Mtss1|211401|metastasis suppressor 1	AK129139|Mtss1|211401|metastasis suppressor 1	NM_001146180|Mtss1|211401|metastasis suppressor 1	NM_144800|Mtss1|211401|metastasis suppressor 1
mm9_v1_chr19_-_44144175_44144240	0.0281514	GCAGCAU	NM_145502|Erlin1|226144|ER lipid raft associated 1	BC021793|Erlin1|226144|ER lipid raft associated 1	BC011220|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr13_+_46513668_46513668	0.0251364	GCAGCAU	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr19_+_47142217_47142252	0.0238378	GCAGCAU	AK031985|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK088953|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_177342|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK169453|Taf5|226182|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr4_+_155265932_155266005	0.0228914	GCAGCAU	AK147505|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC067016|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	NM_207223|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr16_+_94792513_94792513	0.0225188	GCAGCAU	NM_001113389|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chrX_+_53599573_53599586	0.0214037	GCAGCAU	AK142888|Zfp449|78619|zinc finger protein 449	AK036596|Zfp449|78619|zinc finger protein 449	NM_030139|Zfp449|78619|zinc finger protein 449	AK020600|Zfp449|78619|zinc finger protein 449
mm9_v1_chr12_+_106923552_106923650	0.0197519	GCAGCAU	NM_178613|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK171097|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	BC031494|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK168962|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK042664|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK079775|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK020785|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene	AK029484|4933433P14Rik|66787|RIKEN cDNA 4933433P14 gene
mm9_v1_chr4_+_13711928_13711928	0.0196325	GCAGCAU	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr16_-_91011339_91011552	0.0190105	GCAGCAU	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr15_-_94420206_94420335	0.0189346	GCAGCAU	AY267188|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK193163|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK147990|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC094034|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	NM_008971|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	U82324|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC015081|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168142|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168161|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK150852|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK077410|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)
mm9_v1_chr16_-_3976544_3976631	0.0171274	GCAGCAU	AK084199|Nlrc3|268857|NLR family, CARD domain containing 3	AK079766|Nlrc3|268857|NLR family, CARD domain containing 3	AK171971|Nlrc3|268857|NLR family, CARD domain containing 3	NM_001081280|Nlrc3|268857|NLR family, CARD domain containing 3
mm9_v1_chr11_-_88579517_88579542	0.0155941	GCAGCAU	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr1_-_36603970_36604088	0.0132572	GCAGCAU	AK177190|Ankrd39|109346|ankyrin repeat domain 39	AK018681|Ankrd39|109346|ankyrin repeat domain 39	AK042896|Ankrd39|109346|ankyrin repeat domain 39	NM_026241|Ankrd39|109346|ankyrin repeat domain 39	AK160231|Ankrd39|109346|ankyrin repeat domain 39	AK081207|Ankrd39|109346|ankyrin repeat domain 39	AK030874|Ankrd39|109346|ankyrin repeat domain 39	AK158215|Ankrd39|109346|ankyrin repeat domain 39	BC117004|Ankrd39|109346|ankyrin repeat domain 39	BC119100|Ankrd39|109346|ankyrin repeat domain 39	BC144893|Ankrd39|109346|ankyrin repeat domain 39
mm9_v1_chr11_-_121249511_121249580	0.0114411	GCAGCAU	BC096601|Rab40b|217371|Rab40b, member RAS oncogene family	NM_139147|Rab40b|217371|Rab40b, member RAS oncogene family
mm9_v1_chr16_-_30388534_30388615	0.00942567	GCAGCAU	NM_001128094|Atp13a3|224088|ATPase type 13A3	NM_001128096|Atp13a3|224088|ATPase type 13A3
mm9_v1_chr4_-_149112082_149112163	0.0082535	GCAGCAU	AK079157|Tmem201|230917|transmembrane protein 201	AK078532|Tmem201|230917|transmembrane protein 201	AK039221|Tmem201|230917|transmembrane protein 201	BC072645|Tmem201|230917|transmembrane protein 201	NM_001025106|Tmem201|230917|transmembrane protein 201	NM_177672|Tmem201|230917|transmembrane protein 201	AK086543|Tmem201|230917|transmembrane protein 201	AK153631|Tmem201|230917|transmembrane protein 201
mm9_v1_chrX_+_78315963_78315999	0.0078029	GCAGCAU	NM_138751|Tmem47|192216|transmembrane protein 47
mm9_v1_chr10_+_70810540_70810588	0.00743873	GCAGCAU	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr15_-_98701613_98701613	0.00639144	GCAGCAU	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chr11_+_53164267_53164268	0.00375937	GCAGCAU	NM_033565|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr13_-_65214222_65214309	0.00302258	GCAGCAU	BC033469|Hiatl1|66631|hippocampus abundant transcript-like 1	AK090174|Hiatl1|66631|hippocampus abundant transcript-like 1	AK146596|Hiatl1|66631|hippocampus abundant transcript-like 1	NM_001083901|Hiatl1|66631|hippocampus abundant transcript-like 1	NM_133680|Hiatl1|66631|hippocampus abundant transcript-like 1
mm9_v1_chr2_-_25110892_25110940	0.00258645	GCAGCAU	BC049789|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK163207|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK143124|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK169885|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK019617|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	NM_001082476|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1
mm9_v1_chr6_-_127718746_127718746	0.000806092	GCAGCAU	BC060250|Prmt8|381813|protein arginine N-methyltransferase 8	NM_201371|Prmt8|381813|protein arginine N-methyltransferase 8
mm9_v1_chr10_-_6080145_6080228	0.000369593	GCAGCAU	BC138365|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	BC138364|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB020886|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	BC071185|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AF326228|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB051563|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AB025278|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	AK053844|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12	NM_031185|Akap12|83397|A kinase (PRKA) anchor protein (gravin) 12
