mm9_v1_chr12_+_3891743_3891823	6.56314	GGAAUGU	AF480164|Dnmt3a|13435|DNA methyltransferase 3A	NM_153743|Dnmt3a|13435|DNA methyltransferase 3A	AK157792|Dnmt3a|13435|DNA methyltransferase 3A	AK077792|Dnmt3a|13435|DNA methyltransferase 3A	AK136170|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr2_-_56967331_56967448	3.20996	GGAAUGU	S53744|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	AK158607|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2	NM_013613|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr11_-_63735652_63735808	3.17841	GGAAUGU	BC116733|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	BC116743|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AF168992|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK171996|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172015|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK172271|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	NM_018805|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	AK085242|Hs3st3b1|54710|heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1
mm9_v1_chr5_-_50450152_50450240	2.99727	GGAAUGU	AK028929|Gpr125|70693|G protein-coupled receptor 125	AK014455|Gpr125|70693|G protein-coupled receptor 125	BC052391|Gpr125|70693|G protein-coupled receptor 125	NM_133911|Gpr125|70693|G protein-coupled receptor 125
mm9_v1_chr8_+_108583449_108583790	2.86903	GGAAUGU	NM_010901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK147708|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK155087|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK051602|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK134054|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK039929|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	AK220187|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120900|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	BC120901|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	D85612|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887629|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887630|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3	EU887631|Nfatc3|18021|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3
mm9_v1_chr5_-_114358647_114358779	2.82437	GGAAUGU	BC099671|Coro1c|23790|coronin, actin binding protein 1C	AK037801|Coro1c|23790|coronin, actin binding protein 1C	BC085498|Coro1c|23790|coronin, actin binding protein 1C	AF143957|Coro1c|23790|coronin, actin binding protein 1C	BC019444|Coro1c|23790|coronin, actin binding protein 1C	BC087553|Coro1c|23790|coronin, actin binding protein 1C	AK169262|Coro1c|23790|coronin, actin binding protein 1C	AK151017|Coro1c|23790|coronin, actin binding protein 1C	AK151749|Coro1c|23790|coronin, actin binding protein 1C	AK167089|Coro1c|23790|coronin, actin binding protein 1C	AK159506|Coro1c|23790|coronin, actin binding protein 1C	AK169404|Coro1c|23790|coronin, actin binding protein 1C	BC009126|Coro1c|23790|coronin, actin binding protein 1C	AK082986|Coro1c|23790|coronin, actin binding protein 1C	NM_011779|Coro1c|23790|coronin, actin binding protein 1C	AK088101|Coro1c|23790|coronin, actin binding protein 1C	AK077552|Coro1c|23790|coronin, actin binding protein 1C	AK079327|Coro1c|23790|coronin, actin binding protein 1C
mm9_v1_chr3_+_5218545_5218658	2.82065	GGAAUGU	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr17_-_32303796_32303836	2.80551	GGAAUGU	NM_008716|Notch3|18131|Notch gene homolog 3 (Drosophila)	X74760|Notch3|18131|Notch gene homolog 3 (Drosophila)
mm9_v1_chr11_+_120810346_120810440	2.74015	GGAAUGU	AK149707|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK149983|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	NM_001038653|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	NM_001038654|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK141381|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK166048|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK171260|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK169917|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK165596|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3
mm9_v1_chr3_+_121129396_121129492	2.71139	GGAAUGU	AK169098|Cnn3|71994|calponin 3, acidic	AK159555|Cnn3|71994|calponin 3, acidic	AK169021|Cnn3|71994|calponin 3, acidic	AK167201|Cnn3|71994|calponin 3, acidic	AK051628|Cnn3|71994|calponin 3, acidic	AK159871|Cnn3|71994|calponin 3, acidic	AK167613|Cnn3|71994|calponin 3, acidic	AK166578|Cnn3|71994|calponin 3, acidic	BC055711|Cnn3|71994|calponin 3, acidic	AK005460|Cnn3|71994|calponin 3, acidic	NM_028044|Cnn3|71994|calponin 3, acidic	AK051121|Cnn3|71994|calponin 3, acidic	AK169410|Cnn3|71994|calponin 3, acidic
mm9_v1_chr1_-_78193381_78193710	2.50813	GGAAUGU	BC048699|Pax3|18505|paired box gene 3	AK157760|Pax3|18505|paired box gene 3	AK012493|Pax3|18505|paired box gene 3	AK014337|Pax3|18505|paired box gene 3	AK044985|Pax3|18505|paired box gene 3	AK144973|Pax3|18505|paired box gene 3	AK147919|Pax3|18505|paired box gene 3	X59358|Pax3|18505|paired box gene 3	AK048723|Pax3|18505|paired box gene 3	AK083424|Pax3|18505|paired box gene 3	AK148354|Pax3|18505|paired box gene 3	AK045018|Pax3|18505|paired box gene 3	NM_001159520|Pax3|18505|paired box gene 3	NM_008781|Pax3|18505|paired box gene 3
mm9_v1_chr2_+_117937623_117937666	2.4992	GGAAUGU	AK080686|Thbs1|21825|thrombospondin 1	AK145202|Thbs1|21825|thrombospondin 1	AK163092|Thbs1|21825|thrombospondin 1	M87276|Thbs1|21825|thrombospondin 1	BC050917|Thbs1|21825|thrombospondin 1	NM_011580|Thbs1|21825|thrombospondin 1	BC020435|Thbs1|21825|thrombospondin 1	BC042422|Thbs1|21825|thrombospondin 1
mm9_v1_chr6_-_127100954_127101069	2.47846	GGAAUGU	M86182|Ccnd2|12444|cyclin D2	AK007904|Ccnd2|12444|cyclin D2	AK011412|Ccnd2|12444|cyclin D2	AK077367|Ccnd2|12444|cyclin D2	AK147345|Ccnd2|12444|cyclin D2	AK160751|Ccnd2|12444|cyclin D2	AK168954|Ccnd2|12444|cyclin D2	BC049086|Ccnd2|12444|cyclin D2	M83749|Ccnd2|12444|cyclin D2	NM_009829|Ccnd2|12444|cyclin D2
mm9_v1_chr16_-_96349292_96349333	2.30122	GGAAUGU	NM_008251|Hmgn1|15312|high mobility group nucleosomal binding domain 1
mm9_v1_chr4_-_139388882_139388882	2.25164	GGAAUGU	AF254422|Pax7|18509|paired box gene 7	NM_011039|Pax7|18509|paired box gene 7
mm9_v1_chr8_+_130882920_130882997	2.2232	GGAAUGU	AK082992|Nrp1|18186|neuropilin 1	AK083052|Nrp1|18186|neuropilin 1	AK164378|Nrp1|18186|neuropilin 1	NM_008737|Nrp1|18186|neuropilin 1	BC026730|Nrp1|18186|neuropilin 1	BC032048|Nrp1|18186|neuropilin 1	AK148372|Nrp1|18186|neuropilin 1
mm9_v1_chr19_+_36908682_36908797	2.16122	GGAAUGU	NM_001163635|Tnks2|74493|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm9_v1_chr2_+_156665812_156665874	2.11831	GGAAUGU	AK029490|Tgif2|228839|TGFB-induced factor homeobox 2	NM_173396|Tgif2|228839|TGFB-induced factor homeobox 2	BC138706|Tgif2|228839|TGFB-induced factor homeobox 2	BC138705|Tgif2|228839|TGFB-induced factor homeobox 2	AK157623|Tgif2|228839|TGFB-induced factor homeobox 2	AK017884|Tgif2|228839|TGFB-induced factor homeobox 2
mm9_v1_chr3_+_14578670_14578689	1.94046	GGAAUGU	BC003220|E2f5|13559|E2F transcription factor 5	NM_007892|E2f5|13559|E2F transcription factor 5
mm9_v1_chr4_+_46463917_46464167	1.89156	GGAAUGU	AK165807|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC003489|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC005628|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	NM_130889|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	BC093506|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	AK136648|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	AB025582|Anp32b|67628|acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
mm9_v1_chr4_-_94223435_94223491	1.85762	GGAAUGU	AK046647|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK076487|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK013385|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK032696|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	BC020067|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK150311|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK140382|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK171141|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160297|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	AK160572|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene	NM_026368|5830433M19Rik|67770|RIKEN cDNA 5830433M19 gene
mm9_v1_chr1_-_180267913_180267920	1.82725	GGAAUGU	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr1_-_46910333_46910455	1.82702	GGAAUGU	BC062918|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	NM_172653|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	BC052880|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10
mm9_v1_chr13_-_58503862_58503886	1.80029	GGAAUGU	AK167600|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK051313|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK128891|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK160887|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK166656|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	AK011428|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K	NM_025279|Hnrnpk|15387|heterogeneous nuclear ribonucleoprotein K
mm9_v1_chr8_+_74659107_74659219	1.72889	GGAAUGU	AK049383|Tpm4|326618|tropomyosin 4	BC070421|Tpm4|326618|tropomyosin 4	NM_001001491|Tpm4|326618|tropomyosin 4	BC023701|Tpm4|326618|tropomyosin 4	BC032174|Tpm4|326618|tropomyosin 4	BC032175|Tpm4|326618|tropomyosin 4	BC023827|Tpm4|326618|tropomyosin 4
mm9_v1_chr1_+_191552133_191552202	1.618	GGAAUGU	AK037646|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	NM_008976|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK086524|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14	AK028783|Ptpn14|19250|protein tyrosine phosphatase, non-receptor type 14
mm9_v1_chr12_-_81213930_81214002	1.59755	GGAAUGU	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr9_+_59139356_59139442	1.57498	GGAAUGU	AK048904|Adpgk|72141|ADP-dependent glucokinase	AK167634|Adpgk|72141|ADP-dependent glucokinase	NM_028121|Adpgk|72141|ADP-dependent glucokinase	BC094657|Adpgk|72141|ADP-dependent glucokinase	BC021526|Adpgk|72141|ADP-dependent glucokinase	AK149942|Adpgk|72141|ADP-dependent glucokinase	AK011434|Adpgk|72141|ADP-dependent glucokinase	AK169590|Adpgk|72141|ADP-dependent glucokinase	AK162169|Adpgk|72141|ADP-dependent glucokinase
mm9_v1_chr19_+_37000568_37000661	1.57257	GGAAUGU	NM_001080706|Btaf1|107182|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
mm9_v1_chr5_-_115584921_115584983	1.56835	GGAAUGU	AK045128|Unc119b|106840|unc-119 homolog B (C. elegans)	BC115529|Unc119b|106840|unc-119 homolog B (C. elegans)	BC112388|Unc119b|106840|unc-119 homolog B (C. elegans)	AK082614|Unc119b|106840|unc-119 homolog B (C. elegans)	NM_175352|Unc119b|106840|unc-119 homolog B (C. elegans)
mm9_v1_chr14_-_55196138_55196410	1.5649	GGAAUGU	BC011035|Jub|16475|ajuba	NM_010590|Jub|16475|ajuba	U79776|Jub|16475|ajuba
mm9_v1_chr3_-_58329780_58329826	1.5453	GGAAUGU	NM_030685|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr11_+_29072836_29072998	1.5333	GGAAUGU	NM_134034|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK090014|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK041513|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK044742|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK037253|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK165940|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK166627|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	AK129344|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)	BC006870|Smek2|104570|SMEK homolog 2, suppressor of mek1 (Dictyostelium)
mm9_v1_chr18_+_44540137_44540241	1.5117	GGAAUGU	AK153105|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	NM_027490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK008609|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK017809|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK166560|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK010490|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK152160|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153264|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)	AK153310|Dcp2|70640|DCP2 decapping enzyme homolog (S. cerevisiae)
mm9_v1_chr1_-_55144687_55144775	1.48157	GGAAUGU	AK088844|Hspd1|15510|heat shock protein 1 (chaperonin)	AK146831|Hspd1|15510|heat shock protein 1 (chaperonin)	NM_010477|Hspd1|15510|heat shock protein 1 (chaperonin)
mm9_v1_chr4_+_6292817_6292904	1.45777	GGAAUGU	AK169415|Sdcbp|53378|syndecan binding protein	NM_001098227|Sdcbp|53378|syndecan binding protein	NM_016807|Sdcbp|53378|syndecan binding protein	AK033412|Sdcbp|53378|syndecan binding protein	AF003693|Sdcbp|53378|syndecan binding protein	AK150721|Sdcbp|53378|syndecan binding protein	AK152080|Sdcbp|53378|syndecan binding protein	AK159677|Sdcbp|53378|syndecan binding protein	AK150623|Sdcbp|53378|syndecan binding protein	AK152552|Sdcbp|53378|syndecan binding protein	AK153112|Sdcbp|53378|syndecan binding protein	AK169219|Sdcbp|53378|syndecan binding protein	AK045668|Sdcbp|53378|syndecan binding protein	AK168004|Sdcbp|53378|syndecan binding protein	AK028429|Sdcbp|53378|syndecan binding protein	AK146085|Sdcbp|53378|syndecan binding protein	AK150544|Sdcbp|53378|syndecan binding protein	AK150996|Sdcbp|53378|syndecan binding protein	AK151050|Sdcbp|53378|syndecan binding protein	AK152017|Sdcbp|53378|syndecan binding protein	AK152434|Sdcbp|53378|syndecan binding protein	AK153042|Sdcbp|53378|syndecan binding protein	AK159538|Sdcbp|53378|syndecan binding protein	AK169687|Sdcbp|53378|syndecan binding protein	AK171162|Sdcbp|53378|syndecan binding protein	AK150707|Sdcbp|53378|syndecan binding protein	AK152001|Sdcbp|53378|syndecan binding protein	AK152577|Sdcbp|53378|syndecan binding protein	AK152855|Sdcbp|53378|syndecan binding protein	AK152109|Sdcbp|53378|syndecan binding protein	AK150801|Sdcbp|53378|syndecan binding protein	AK014678|Sdcbp|53378|syndecan binding protein	AK150321|Sdcbp|53378|syndecan binding protein	AK150661|Sdcbp|53378|syndecan binding protein	AK150736|Sdcbp|53378|syndecan binding protein	AK159124|Sdcbp|53378|syndecan binding protein	AK165657|Sdcbp|53378|syndecan binding protein	AK167513|Sdcbp|53378|syndecan binding protein	AK168777|Sdcbp|53378|syndecan binding protein	BC019400|Sdcbp|53378|syndecan binding protein	AK150278|Sdcbp|53378|syndecan binding protein	AF077527|Sdcbp|53378|syndecan binding protein	AK159323|Sdcbp|53378|syndecan binding protein
mm9_v1_chr2_-_103637096_103637239	1.43716	GGAAUGU	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr5_+_115777174_115777309	1.42312	GGAAUGU	BC012217|Srsf9|108014|serine/arginine-rich splicing factor 9	NM_025573|Srsf9|108014|serine/arginine-rich splicing factor 9	AK159190|Srsf9|108014|serine/arginine-rich splicing factor 9	AK011621|Srsf9|108014|serine/arginine-rich splicing factor 9
mm9_v1_chr15_-_38008565_38008625	1.41992	GGAAUGU	NM_001081359|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5	NM_001112721|Ubr5|70790|ubiquitin protein ligase E3 component n-recognin 5
mm9_v1_chr3_+_151873407_151873495	1.41773	GGAAUGU	AK028418|Fubp1|51886|far upstream element (FUSE) binding protein 1	NM_057172|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK167730|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC023780|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK032517|Fubp1|51886|far upstream element (FUSE) binding protein 1	BC014763|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK029458|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK079204|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK138011|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK166066|Fubp1|51886|far upstream element (FUSE) binding protein 1	AK160815|Fubp1|51886|far upstream element (FUSE) binding protein 1
mm9_v1_chr18_+_73732352_73732560	1.41453	GGAAUGU	NM_001039214|Mex3c|240396|mex3 homolog C (C. elegans)	AK133686|Mex3c|240396|mex3 homolog C (C. elegans)
mm9_v1_chr9_+_110034489_110034583	1.40876	GGAAUGU	NM_009211|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK143485|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144122|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK133922|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	U85614|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK144631|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK145352|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	AK042194|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC056375|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC052423|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC053064|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	BC022173|Smarcc1|20588|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm9_v1_chr9_+_55388955_55389013	1.38261	GGAAUGU	NM_027397|Isl2|104360|insulin related protein 2 (islet 2)	AK013964|Isl2|104360|insulin related protein 2 (islet 2)	BC120880|Isl2|104360|insulin related protein 2 (islet 2)	BC148307|Isl2|104360|insulin related protein 2 (islet 2)
mm9_v1_chr6_+_21935907_21936001	1.36105	GGAAUGU	AK087585|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	NM_001081351|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	AK033229|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	AK040587|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene
mm9_v1_chr15_-_94420206_94420335	1.35317	GGAAUGU	AY267188|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK193163|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK147990|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC094034|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	NM_008971|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	U82324|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	BC015081|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168142|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK168161|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK150852|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)	AK077410|Twf1|19230|twinfilin, actin-binding protein, homolog 1 (Drosophila)
mm9_v1_chr9_+_37296867_37296905	1.3211	GGAAUGU	BC066002|BC024479|235184|cDNA sequence BC024479	NM_146222|BC024479|235184|cDNA sequence BC024479
mm9_v1_chr15_+_96117952_96118007	1.2701	GGAAUGU	AK007269|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)	NM_175251|Arid2|77044|AT rich interactive domain 2 (ARID, RFX-like)
mm9_v1_chr5_-_23536487_23536520	1.26706	GGAAUGU	BC060692|Fam126a|84652|family with sequence similarity 126, member A	AK155209|Fam126a|84652|family with sequence similarity 126, member A	NM_053090|Fam126a|84652|family with sequence similarity 126, member A
mm9_v1_chr7_+_82600419_82600490	1.24555	GGAAUGU	NM_029332|Akap13|75547|A kinase (PRKA) anchor protein 13	AK157986|Akap13|75547|A kinase (PRKA) anchor protein 13	AK172125|Akap13|75547|A kinase (PRKA) anchor protein 13
mm9_v1_chr9_-_96789818_96789892	1.24399	GGAAUGU	AK164254|Acpl2|235534|acid phosphatase-like 2	AK083712|Acpl2|235534|acid phosphatase-like 2	BC023960|Acpl2|235534|acid phosphatase-like 2	BC036342|Acpl2|235534|acid phosphatase-like 2	NM_153420|Acpl2|235534|acid phosphatase-like 2	AK043758|Acpl2|235534|acid phosphatase-like 2	AK082059|Acpl2|235534|acid phosphatase-like 2	AK084605|Acpl2|235534|acid phosphatase-like 2	AK144699|Acpl2|235534|acid phosphatase-like 2	AK036973|Acpl2|235534|acid phosphatase-like 2
mm9_v1_chr10_-_86168115_86168230	1.21064	GGAAUGU	BC010445|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	M16370|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	J03297|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	NM_011631|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	BC011439|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK151413|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK150811|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK153550|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK160093|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK165975|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK168952|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK169090|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1	AK159974|Hsp90b1|22027|heat shock protein 90, beta (Grp94), member 1
mm9_v1_chr14_-_73109722_73109912	1.19166	GGAAUGU	AK089380|Fndc3a|319448|fibronectin type III domain containing 3A	AK032733|Fndc3a|319448|fibronectin type III domain containing 3A	AK164398|Fndc3a|319448|fibronectin type III domain containing 3A	AK048586|Fndc3a|319448|fibronectin type III domain containing 3A	DQ192036|Fndc3a|319448|fibronectin type III domain containing 3A	NM_207636|Fndc3a|319448|fibronectin type III domain containing 3A
mm9_v1_chr13_-_97440734_97440890	1.17278	GGAAUGU	AK159899|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	BC085083|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	AK048784|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase	NM_008255|Hmgcr|15357|3-hydroxy-3-methylglutaryl-Coenzyme A reductase
mm9_v1_chr17_-_71199129_71199153	1.16686	GGAAUGU	NM_001164076|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr6_-_98978185_98978383	1.16113	GGAAUGU	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr9_+_69301471_69301531	1.15941	GGAAUGU	AK012563|Anxa2|12306|annexin A2	BC003327|Anxa2|12306|annexin A2	NM_007585|Anxa2|12306|annexin A2	AK164507|Anxa2|12306|annexin A2	AK088645|Anxa2|12306|annexin A2	AK168083|Anxa2|12306|annexin A2	AK146096|Anxa2|12306|annexin A2	AK150586|Anxa2|12306|annexin A2	AK152561|Anxa2|12306|annexin A2	AK160746|Anxa2|12306|annexin A2	AK165888|Anxa2|12306|annexin A2	AK167894|Anxa2|12306|annexin A2	BC005763|Anxa2|12306|annexin A2
mm9_v1_chr15_+_102236709_102236810	1.15057	GGAAUGU	EF200005|Sp1|20683|trans-acting transcription factor 1	NM_013672|Sp1|20683|trans-acting transcription factor 1	AF022363|Sp1|20683|trans-acting transcription factor 1	S79832|Sp1|20683|trans-acting transcription factor 1	AF062566|Sp1|20683|trans-acting transcription factor 1
mm9_v1_chr4_-_137352181_137352292	1.142	GGAAUGU	X13409|Alpl|11647|alkaline phosphatase, liver/bone/kidney	BC065175|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK167481|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK166732|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK076459|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK161780|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK167023|Alpl|11647|alkaline phosphatase, liver/bone/kidney	J02980|Alpl|11647|alkaline phosphatase, liver/bone/kidney	NM_007431|Alpl|11647|alkaline phosphatase, liver/bone/kidney	AK164002|Alpl|11647|alkaline phosphatase, liver/bone/kidney
mm9_v1_chrX_+_139952975_139953253	1.13191	GGAAUGU	AK158893|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195048|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AK031853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr12_+_33505175_33505279	1.13094	GGAAUGU	BC018358|Nampt|59027|nicotinamide phosphoribosyltransferase	NM_021524|Nampt|59027|nicotinamide phosphoribosyltransferase
mm9_v1_chr18_+_83080270_83080270	1.12806	GGAAUGU	NM_183033|Zfp516|329003|zinc finger protein 516
mm9_v1_chr2_-_94278303_94278325	1.1277	GGAAUGU	AK137466|Api5|11800|apoptosis inhibitor 5	NM_007466|Api5|11800|apoptosis inhibitor 5
mm9_v1_chr15_+_81575277_81575277	1.11961	GGAAUGU	NM_001081016|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chrX_-_101609169_101609195	1.11317	GGAAUGU	AK151967|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152535|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152816|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK152946|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK084853|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	AK040069|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC151037|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	NM_009592|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7	BC080769|Abcb7|11306|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm9_v1_chr15_+_84753817_84753857	1.06853	GGAAUGU	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr18_-_77803843_77803942	1.06794	GGAAUGU	DQ465971|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_001164504|Rnf165|225743|ring finger protein 165
mm9_v1_chr2_+_75497282_75497379	1.06086	GGAAUGU	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chr6_+_100783598_100783865	1.05273	GGAAUGU	BC110429|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK082539|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	NM_182939|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	AK084169|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC112399|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC056340|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2	BC098464|Ppp4r2|232314|protein phosphatase 4, regulatory subunit 2
mm9_v1_chr17_-_57170896_57170957	1.04974	GGAAUGU	AK077415|Khsrp|16549|KH-type splicing regulatory protein	AK156541|Khsrp|16549|KH-type splicing regulatory protein	NM_010613|Khsrp|16549|KH-type splicing regulatory protein
mm9_v1_chr9_+_119803988_119804030	1.04451	GGAAUGU	BC050106|Wdr48|67561|WD repeat domain 48	AK031244|Wdr48|67561|WD repeat domain 48	BC062967|Wdr48|67561|WD repeat domain 48	AK018396|Wdr48|67561|WD repeat domain 48	AK030041|Wdr48|67561|WD repeat domain 48	AK035273|Wdr48|67561|WD repeat domain 48	AK035864|Wdr48|67561|WD repeat domain 48	AK043970|Wdr48|67561|WD repeat domain 48	AK128953|Wdr48|67561|WD repeat domain 48	NM_026236|Wdr48|67561|WD repeat domain 48	AK033631|Wdr48|67561|WD repeat domain 48	AK012599|Wdr48|67561|WD repeat domain 48	BC048155|Wdr48|67561|WD repeat domain 48
mm9_v1_chr15_-_3945704_3945774	1.04161	GGAAUGU	AK045350|AW549877|106064|expressed sequence AW549877	AK154940|AW549877|106064|expressed sequence AW549877	NM_145930|AW549877|106064|expressed sequence AW549877
mm9_v1_chr10_-_8605668_8605870	1.03649	GGAAUGU	AJ507736|Sash1|70097|SAM and SH3 domain containing 1	AK149872|Sash1|70097|SAM and SH3 domain containing 1	AK049453|Sash1|70097|SAM and SH3 domain containing 1	NM_175155|Sash1|70097|SAM and SH3 domain containing 1
mm9_v1_chr6_-_148779856_148779997	1.02667	GGAAUGU	BC151036|Ipo8|320727|importin 8	BC151052|Ipo8|320727|importin 8	BC044819|Ipo8|320727|importin 8	BC054373|Ipo8|320727|importin 8	NM_001081113|Ipo8|320727|importin 8
mm9_v1_chr17_-_71202829_71202871	1.01526	GGAAUGU	AK160193|Tgif1|21815|TGFB-induced factor homeobox 1	NM_001164074|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr3_-_19211000_19211321	1.00023	GGAAUGU	AY007702|Pde7a|18583|phosphodiesterase 7A	AK154521|Pde7a|18583|phosphodiesterase 7A	BC062909|Pde7a|18583|phosphodiesterase 7A	NM_001122759|Pde7a|18583|phosphodiesterase 7A
mm9_v1_chr5_+_123794456_123794498	0.985331	GGAAUGU	NM_029850|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK086803|Bcl7a|77045|B-cell CLL/lymphoma 7A	AK044782|Bcl7a|77045|B-cell CLL/lymphoma 7A
mm9_v1_chrX_+_39503858_39503966	0.976238	GGAAUGU	AK146718|Stag2|20843|stromal antigen 2	AK168899|Stag2|20843|stromal antigen 2	NM_021465|Stag2|20843|stromal antigen 2
mm9_v1_chr2_-_84490827_84490896	0.95274	GGAAUGU	BC054544|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC043108|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK161790|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK164485|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	AK168453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085448|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085449|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_001085450|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	NM_007615|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr8_+_109674517_109674597	0.940399	GGAAUGU	BC054749|Cyb5b|66427|cytochrome b5 type B	BC062980|Cyb5b|66427|cytochrome b5 type B	AK003333|Cyb5b|66427|cytochrome b5 type B	AK088970|Cyb5b|66427|cytochrome b5 type B	AK165543|Cyb5b|66427|cytochrome b5 type B	AK052810|Cyb5b|66427|cytochrome b5 type B	NM_025558|Cyb5b|66427|cytochrome b5 type B	AK019263|Cyb5b|66427|cytochrome b5 type B	BC048147|Cyb5b|66427|cytochrome b5 type B	AK003815|Cyb5b|66427|cytochrome b5 type B	AK168422|Cyb5b|66427|cytochrome b5 type B	AK166544|Cyb5b|66427|cytochrome b5 type B	BC046810|Cyb5b|66427|cytochrome b5 type B	BC046479|Cyb5b|66427|cytochrome b5 type B	BC058812|Cyb5b|66427|cytochrome b5 type B
mm9_v1_chr4_-_87452140_87452217	0.938419	GGAAUGU	AK147009|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK008707|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AK019458|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_029931|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr7_-_133343904_133344032	0.893722	GGAAUGU	BC058090|Xpo6|74204|exportin 6	NM_028816|Xpo6|74204|exportin 6	AK049009|Xpo6|74204|exportin 6	AK154709|Xpo6|74204|exportin 6
mm9_v1_chr9_-_70351520_70351611	0.88716	GGAAUGU	AK171932|Rnf111|93836|ring finger 111	AF330197|Rnf111|93836|ring finger 111	NM_033604|Rnf111|93836|ring finger 111
mm9_v1_chr11_+_87861165_87861225	0.880366	GGAAUGU	AK150535|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_001078167|Srsf1|110809|serine/arginine-rich splicing factor 1	NM_173374|Srsf1|110809|serine/arginine-rich splicing factor 1	AK053674|Srsf1|110809|serine/arginine-rich splicing factor 1	AK018176|Srsf1|110809|serine/arginine-rich splicing factor 1	BC058627|Srsf1|110809|serine/arginine-rich splicing factor 1	AK078715|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169203|Srsf1|110809|serine/arginine-rich splicing factor 1	AK169623|Srsf1|110809|serine/arginine-rich splicing factor 1	AK190745|Srsf1|110809|serine/arginine-rich splicing factor 1
mm9_v1_chr11_+_87881747_87881842	0.8723	GGAAUGU	AF104410|Vezf1|22344|vascular endothelial zinc finger 1	NM_016686|Vezf1|22344|vascular endothelial zinc finger 1
mm9_v1_chr16_+_4594703_4594731	0.871695	GGAAUGU	NM_031184|Glis2|83396|GLIS family zinc finger 2
mm9_v1_chr2_-_73730605_73730700	0.858915	GGAAUGU	AK139844|Atf2|11909|activating transcription factor 2	AK146839|Atf2|11909|activating transcription factor 2	AK139515|Atf2|11909|activating transcription factor 2	BC079883|Atf2|11909|activating transcription factor 2	BC085137|Atf2|11909|activating transcription factor 2	BC082596|Atf2|11909|activating transcription factor 2	AK035438|Atf2|11909|activating transcription factor 2	AK140855|Atf2|11909|activating transcription factor 2	AK144977|Atf2|11909|activating transcription factor 2	AK051591|Atf2|11909|activating transcription factor 2	AK087424|Atf2|11909|activating transcription factor 2	NM_001025093|Atf2|11909|activating transcription factor 2	NM_009715|Atf2|11909|activating transcription factor 2	AK145887|Atf2|11909|activating transcription factor 2
mm9_v1_chr17_+_15636851_15636923	0.858241	GGAAUGU	AK085037|Tbp|21374|TATA box binding protein	NM_013684|Tbp|21374|TATA box binding protein	BC016476|Tbp|21374|TATA box binding protein	AK089397|Tbp|21374|TATA box binding protein	BC050136|Tbp|21374|TATA box binding protein	U63933|Tbp|21374|TATA box binding protein	BC012685|Tbp|21374|TATA box binding protein
mm9_v1_chr1_-_168339909_168339980	0.844587	GGAAUGU	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr10_+_56097078_56097350	0.832047	GGAAUGU	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr14_+_12386043_12386066	0.811996	GGAAUGU	BC079595|Ptprg|19270|protein tyrosine phosphatase, receptor type, G	NM_008981|Ptprg|19270|protein tyrosine phosphatase, receptor type, G
mm9_v1_chr7_+_16715637_16715696	0.809523	GGAAUGU	BC058704|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	NM_148946|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2	BC080277|Slc8a2|110891|solute carrier family 8 (sodium/calcium exchanger), member 2
mm9_v1_chr11_+_72420705_72421072	0.801998	GGAAUGU	NM_025985|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	BC065083|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK083029|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK012539|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK013902|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK167472|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)	AK197264|Ube2g1|67128|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)
mm9_v1_chr3_+_129235284_129235325	0.801596	GGAAUGU	AK087440|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AK029029|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	NM_130450|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	BC051041|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)	AY053453|Elovl6|170439|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm9_v1_chr10_+_79317316_79317391	0.801338	GGAAUGU	AK151292|Ptbp1|19205|polypyrimidine tract binding protein 1	AK153561|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_001077363|Ptbp1|19205|polypyrimidine tract binding protein 1	NM_008956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK163274|Ptbp1|19205|polypyrimidine tract binding protein 1	BC007472|Ptbp1|19205|polypyrimidine tract binding protein 1	AK082600|Ptbp1|19205|polypyrimidine tract binding protein 1	AK150840|Ptbp1|19205|polypyrimidine tract binding protein 1	AK168392|Ptbp1|19205|polypyrimidine tract binding protein 1	AK037607|Ptbp1|19205|polypyrimidine tract binding protein 1	AK172712|Ptbp1|19205|polypyrimidine tract binding protein 1	AK044956|Ptbp1|19205|polypyrimidine tract binding protein 1	AK043824|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr4_+_136025675_136025745	0.78772	GGAAUGU	AK139583|Luzp1|269593|leucine zipper protein 1	NM_024452|Luzp1|269593|leucine zipper protein 1	AK012514|Luzp1|269593|leucine zipper protein 1	BC026746|Luzp1|269593|leucine zipper protein 1
mm9_v1_chr10_-_29255606_29255672	0.78663	GGAAUGU	BC103794|Rspo3|72780|R-spondin 3 homolog (Xenopus laevis)	AK076308|Rspo3|72780|R-spondin 3 homolog (Xenopus laevis)	AK013366|Rspo3|72780|R-spondin 3 homolog (Xenopus laevis)	AB055811|Rspo3|72780|R-spondin 3 homolog (Xenopus laevis)	AK133916|Rspo3|72780|R-spondin 3 homolog (Xenopus laevis)	NM_028351|Rspo3|72780|R-spondin 3 homolog (Xenopus laevis)
mm9_v1_chr2_+_165818136_165818143	0.786344	GGAAUGU	NM_008679|Ncoa3|17979|nuclear receptor coactivator 3
mm9_v1_chr6_-_71773747_71773805	0.782948	GGAAUGU	AK039187|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010369|Mrpl35|66223|mitochondrial ribosomal protein L35	AK012807|Mrpl35|66223|mitochondrial ribosomal protein L35	AK004385|Mrpl35|66223|mitochondrial ribosomal protein L35	AK010223|Mrpl35|66223|mitochondrial ribosomal protein L35	BC028750|Mrpl35|66223|mitochondrial ribosomal protein L35	NM_025430|Mrpl35|66223|mitochondrial ribosomal protein L35
mm9_v1_chr10_-_117283020_117283117	0.774611	GGAAUGU	BC052480|Rap1b|215449|RAS related protein 1b	NM_024457|Rap1b|215449|RAS related protein 1b	AK163242|Rap1b|215449|RAS related protein 1b
mm9_v1_chr3_-_104855832_104856063	0.761376	GGAAUGU	BC003236|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK145085|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK051259|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK030438|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK129359|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163332|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_001163333|Cttnbp2nl|80281|CTTNBP2 N-terminal like	AK029901|Cttnbp2nl|80281|CTTNBP2 N-terminal like	NM_030249|Cttnbp2nl|80281|CTTNBP2 N-terminal like
mm9_v1_chr11_-_30098163_30098286	0.751057	GGAAUGU	AF017112|Spnb2|20742|spectrin beta 2	AF016040|Spnb2|20742|spectrin beta 2	AK079842|Spnb2|20742|spectrin beta 2	AK157727|Spnb2|20742|spectrin beta 2	AK169544|Spnb2|20742|spectrin beta 2	NM_009260|Spnb2|20742|spectrin beta 2
mm9_v1_chr11_+_103635438_103635563	0.750665	GGAAUGU	AK132516|Wnt3|22415|wingless-related MMTV integration site 3	NM_009521|Wnt3|22415|wingless-related MMTV integration site 3	M32502|Wnt3|22415|wingless-related MMTV integration site 3	BC152305|Wnt3|22415|wingless-related MMTV integration site 3	BC152537|Wnt3|22415|wingless-related MMTV integration site 3	BC152304|Wnt3|22415|wingless-related MMTV integration site 3	AK141154|Wnt3|22415|wingless-related MMTV integration site 3	BC141271|Wnt3|22415|wingless-related MMTV integration site 3	BC141274|Wnt3|22415|wingless-related MMTV integration site 3
mm9_v1_chr3_+_152058937_152059038	0.743214	GGAAUGU	NM_001080755|Zzz3|108946|zinc finger, ZZ domain containing 3	AK131150|Zzz3|108946|zinc finger, ZZ domain containing 3
mm9_v1_chr16_+_14705932_14706066	0.730687	GGAAUGU	AK133968|Snai2|20583|snail homolog 2 (Drosophila)	BC062164|Snai2|20583|snail homolog 2 (Drosophila)	NM_011415|Snai2|20583|snail homolog 2 (Drosophila)	U79550|Snai2|20583|snail homolog 2 (Drosophila)	U97059|Snai2|20583|snail homolog 2 (Drosophila)
mm9_v1_chr1_+_59538966_59539075	0.729582	GGAAUGU	NM_008057|Fzd7|14369|frizzled homolog 7 (Drosophila)	BC063077|Fzd7|14369|frizzled homolog 7 (Drosophila)
mm9_v1_chr2_-_165710128_165710217	0.720112	GGAAUGU	AK038961|Zmynd8|228880|zinc finger, MYND-type containing 8	AK155864|Zmynd8|228880|zinc finger, MYND-type containing 8	BC048186|Zmynd8|228880|zinc finger, MYND-type containing 8	NM_027230|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chr17_-_71200462_71200609	0.702406	GGAAUGU	BC005724|Tgif1|21815|TGFB-induced factor homeobox 1	AK008909|Tgif1|21815|TGFB-induced factor homeobox 1	NM_009372|Tgif1|21815|TGFB-induced factor homeobox 1
mm9_v1_chr15_-_82979687_82979804	0.695212	GGAAUGU	BC046505|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK167552|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK081139|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	BC037652|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK150130|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK052722|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	BC058225|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK083924|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	NM_178627|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK087446|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK220221|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3	AK152060|Poldip3|73826|polymerase (DNA-directed), delta interacting protein 3
mm9_v1_chr3_-_116126932_116126949	0.692924	GGAAUGU	AK043956|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK052560|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	AK142294|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001080818|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)	NM_001173553|Cdc14a|229776|CDC14 cell division cycle 14 homolog A (S. cerevisiae)
mm9_v1_chr2_+_30093236_30093288	0.687369	GGAAUGU	NM_177725|Lrrc8a|241296|leucine rich repeat containing 8A
mm9_v1_chr5_-_114830457_114830513	0.685652	GGAAUGU	AK147714|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK163351|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK161199|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK028657|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK041516|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK145295|Kctd10|330171|potassium channel tetramerisation domain containing 10	AK166505|Kctd10|330171|potassium channel tetramerisation domain containing 10	BC006935|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_001159941|Kctd10|330171|potassium channel tetramerisation domain containing 10	NM_026145|Kctd10|330171|potassium channel tetramerisation domain containing 10
mm9_v1_chr15_+_80629020_80629144	0.683223	GGAAUGU	NM_177124|Tnrc6b|213988|trinucleotide repeat containing 6b	AK051922|Tnrc6b|213988|trinucleotide repeat containing 6b	BC068158|Tnrc6b|213988|trinucleotide repeat containing 6b
mm9_v1_chrX_+_50265390_50265552	0.679486	GGAAUGU	AK157045|Phf6|70998|PHD finger protein 6	AK012211|Phf6|70998|PHD finger protein 6	AK077803|Phf6|70998|PHD finger protein 6	AK163345|Phf6|70998|PHD finger protein 6	BC043127|Phf6|70998|PHD finger protein 6	NM_027642|Phf6|70998|PHD finger protein 6	AK141804|Phf6|70998|PHD finger protein 6	BC055330|Phf6|70998|PHD finger protein 6	AK122560|Phf6|70998|PHD finger protein 6	AK028498|Phf6|70998|PHD finger protein 6	AK038320|Phf6|70998|PHD finger protein 6	BC057374|Phf6|70998|PHD finger protein 6	AK192342|Phf6|70998|PHD finger protein 6	AK213676|Phf6|70998|PHD finger protein 6
mm9_v1_chr15_-_96529998_96530181	0.675968	GGAAUGU	BC041108|Slc38a2|67760|solute carrier family 38, member 2	BC027259|Slc38a2|67760|solute carrier family 38, member 2	AK129342|Slc38a2|67760|solute carrier family 38, member 2	BC048178|Slc38a2|67760|solute carrier family 38, member 2	NM_175121|Slc38a2|67760|solute carrier family 38, member 2	AK017145|Slc38a2|67760|solute carrier family 38, member 2	AK030917|Slc38a2|67760|solute carrier family 38, member 2	AK031615|Slc38a2|67760|solute carrier family 38, member 2	AK047403|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr3_-_68808386_68808491	0.67507	GGAAUGU	BC034101|Ift80|68259|intraflagellar transport 80 homolog (Chlamydomonas)	AK042231|Ift80|68259|intraflagellar transport 80 homolog (Chlamydomonas)	AK129339|Ift80|68259|intraflagellar transport 80 homolog (Chlamydomonas)	AK147305|Ift80|68259|intraflagellar transport 80 homolog (Chlamydomonas)	NM_026641|Ift80|68259|intraflagellar transport 80 homolog (Chlamydomonas)
mm9_v1_chr16_+_17233664_17233756	0.673649	GGAAUGU	AK157276|Hic2|58180|hypermethylated in cancer 2	AK156332|Hic2|58180|hypermethylated in cancer 2	NM_178922|Hic2|58180|hypermethylated in cancer 2	BC065124|Hic2|58180|hypermethylated in cancer 2	AK129266|Hic2|58180|hypermethylated in cancer 2	AK084975|Hic2|58180|hypermethylated in cancer 2
mm9_v1_chrX_-_90877453_90877549	0.673464	GGAAUGU	AK139486|Pola1|18968|polymerase (DNA directed), alpha 1	AK037836|Pola1|18968|polymerase (DNA directed), alpha 1	D13543|Pola1|18968|polymerase (DNA directed), alpha 1	BC138047|Pola1|18968|polymerase (DNA directed), alpha 1	D17384|Pola1|18968|polymerase (DNA directed), alpha 1	NM_008892|Pola1|18968|polymerase (DNA directed), alpha 1
mm9_v1_chrX_+_148667763_148667814	0.672253	GGAAUGU	AK150152|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK155651|Kdm5c|20591|lysine (K)-specific demethylase 5C	NM_013668|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK011577|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK155279|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK155427|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK158340|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK008105|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC038940|Kdm5c|20591|lysine (K)-specific demethylase 5C	AK081369|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC026777|Kdm5c|20591|lysine (K)-specific demethylase 5C	AF127245|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC043096|Kdm5c|20591|lysine (K)-specific demethylase 5C	BC054550|Kdm5c|20591|lysine (K)-specific demethylase 5C
mm9_v1_chr4_-_154010868_154010981	0.671175	GGAAUGU	AB078338|Prdm16|70673|PR domain containing 16	AK083829|Prdm16|70673|PR domain containing 16	BC053082|Prdm16|70673|PR domain containing 16	BC059838|Prdm16|70673|PR domain containing 16	NM_001177995|Prdm16|70673|PR domain containing 16	NM_027504|Prdm16|70673|PR domain containing 16
mm9_v1_chr6_+_56664888_56664904	0.670369	GGAAUGU	AK147365|Avl9|78937|AVL9 homolog (S. cerevisiase)	NM_030235|Avl9|78937|AVL9 homolog (S. cerevisiase)
mm9_v1_chr2_+_162843196_162843279	0.669663	GGAAUGU	AK160745|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK088467|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	NM_172150|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK144188|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	BC037708|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)
mm9_v1_chr5_-_52581705_52581765	0.655712	GGAAUGU	BC003745|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	BC100343|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK146441|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK145983|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151015|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK151757|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK149869|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168323|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK168835|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	AK169174|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_001042620|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15	NM_007839|Dhx15|13204|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm9_v1_chr10_-_75384293_75384361	0.655648	GGAAUGU	BC025163|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	AB041578|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	AJ011739|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	AJ011740|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	AK008558|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	AK075906|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	AK145552|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	AK150169|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	NM_001161853|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	NM_011418|Smarcb1|20587|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
mm9_v1_chr2_+_57090045_57090088	0.654232	GGAAUGU	AK144716|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_001145820|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr14_+_79880952_79881000	0.654135	GGAAUGU	BC057134|Elf1|13709|E74-like factor 1	NM_007920|Elf1|13709|E74-like factor 1
mm9_v1_chr1_+_43502537_43502605	0.650417	GGAAUGU	AK051665|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	NM_010879|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2	AK014949|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chr2_-_68309996_68310080	0.648892	GGAAUGU	AK017292|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AF099988|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	BC064443|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	NM_016866|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)	AK148456|Stk39|53416|serine/threonine kinase 39, STE20/SPS1 homolog (yeast)
mm9_v1_chr11_+_66725482_66725594	0.641022	GGAAUGU	AK051285|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK041182|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK051645|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	NM_178656|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK084056|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	AK051158|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	BC147296|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels	BC147297|Pirt|193003|phosphoinositide-interacting regulator of transient receptor potential channels
mm9_v1_chr4_+_33397279_33397404	0.63162	GGAAUGU	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr8_-_112261607_112261664	0.619254	GGAAUGU	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chrX_+_139997806_139997811	0.619224	GGAAUGU	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr1_-_130488785_130488878	0.608079	GGAAUGU	Z80112|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	U59760|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	BC098322|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	AB000803|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	BC031665|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	Z80111|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	NM_009911|Cxcr4|12767|chemokine (C-X-C motif) receptor 4	X99582|Cxcr4|12767|chemokine (C-X-C motif) receptor 4
mm9_v1_chr15_+_58247016_58247063	0.599848	GGAAUGU	AK137324|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	NM_145959|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	BC070426|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr1_-_152840432_152840584	0.599157	GGAAUGU	BC147549|Hmcn1|545370|hemicentin 1	BC147568|Hmcn1|545370|hemicentin 1	AK052713|Hmcn1|545370|hemicentin 1	NM_001024720|Hmcn1|545370|hemicentin 1
mm9_v1_chr10_+_42481292_42481301	0.591549	GGAAUGU	BC059816|Sec63|140740|SEC63-like (S. cerevisiae)	NM_153055|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr16_+_27388907_27389196	0.587272	GGAAUGU	BC144895|Ccdc50|67501|coiled-coil domain containing 50	BC144898|Ccdc50|67501|coiled-coil domain containing 50	BC145933|Ccdc50|67501|coiled-coil domain containing 50	BC145935|Ccdc50|67501|coiled-coil domain containing 50	NM_001025615|Ccdc50|67501|coiled-coil domain containing 50	NM_026202|Ccdc50|67501|coiled-coil domain containing 50	AK162434|Ccdc50|67501|coiled-coil domain containing 50	AK016827|Ccdc50|67501|coiled-coil domain containing 50	AK151672|Ccdc50|67501|coiled-coil domain containing 50	AK147820|Ccdc50|67501|coiled-coil domain containing 50	AK077557|Ccdc50|67501|coiled-coil domain containing 50	AK165214|Ccdc50|67501|coiled-coil domain containing 50	AK012190|Ccdc50|67501|coiled-coil domain containing 50	AJ534985|Ccdc50|67501|coiled-coil domain containing 50
mm9_v1_chr18_-_7626805_7626890	0.587166	GGAAUGU	AK033081|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	BC049662|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK012883|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK036956|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK035303|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK050710|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK162694|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK078849|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001081287|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	NM_001161620|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	AK027937|Mpp7|75739|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm9_v1_chr18_+_53335981_53336033	0.581346	GGAAUGU	AK005470|Snx2|67804|sorting nexin 2	AK002692|Snx2|67804|sorting nexin 2	BC006960|Snx2|67804|sorting nexin 2	NM_026386|Snx2|67804|sorting nexin 2	AK010572|Snx2|67804|sorting nexin 2	AK075929|Snx2|67804|sorting nexin 2	AK153525|Snx2|67804|sorting nexin 2	CT010229|Snx2|67804|sorting nexin 2
mm9_v1_chrX_+_135744582_135744582	0.574152	GGAAUGU	NM_001164630|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_175541|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr19_+_8911956_8912218	0.573582	GGAAUGU	NM_001136064|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK052341|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	BC061689|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chr13_+_44826121_44826271	0.571129	GGAAUGU	D31967|Jarid2|16468|jumonji, AT rich interactive domain 2	BC052444|Jarid2|16468|jumonji, AT rich interactive domain 2	BC060695|Jarid2|16468|jumonji, AT rich interactive domain 2	NM_021878|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr1_+_55144949_55145013	0.570112	GGAAUGU	NM_008303|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr1_+_133807034_133807132	0.563758	GGAAUGU	NM_001145804|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	NM_175294|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AB049825|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AK078816|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	BC039951|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm9_v1_chr14_+_48283430_48283453	0.55668	GGAAUGU	NM_008477|Ktn1|16709|kinectin 1	L43326|Ktn1|16709|kinectin 1
mm9_v1_chr18_+_42435006_42435038	0.556543	GGAAUGU	NM_172626|Rbm27|225432|RNA binding motif protein 27	AY461716|Rbm27|225432|RNA binding motif protein 27
mm9_v1_chrX_-_39265047_39265129	0.552344	GGAAUGU	AK140950|Thoc2|331401|THO complex 2	AK138023|Thoc2|331401|THO complex 2	NM_001033422|Thoc2|331401|THO complex 2	AK137966|Thoc2|331401|THO complex 2
mm9_v1_chr15_-_36724292_36724292	0.551985	GGAAUGU	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr12_-_60320438_60320474	0.551214	GGAAUGU	BC020022|Fbxo33|70611|F-box protein 33	NM_001033156|Fbxo33|70611|F-box protein 33
mm9_v1_chr8_+_23970006_23970020	0.550511	GGAAUGU	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr8_+_59799779_59799785	0.549875	GGAAUGU	AK035160|Hand2|15111|heart and neural crest derivatives expressed transcript 2	NM_010402|Hand2|15111|heart and neural crest derivatives expressed transcript 2
mm9_v1_chr3_+_142428186_142428231	0.529998	GGAAUGU	AK146223|Gtf2b|229906|general transcription factor IIB	AK131856|Gtf2b|229906|general transcription factor IIB	AK133097|Gtf2b|229906|general transcription factor IIB	AK133825|Gtf2b|229906|general transcription factor IIB	AK143935|Gtf2b|229906|general transcription factor IIB	AK145403|Gtf2b|229906|general transcription factor IIB	AK146666|Gtf2b|229906|general transcription factor IIB	AK146910|Gtf2b|229906|general transcription factor IIB	AK151577|Gtf2b|229906|general transcription factor IIB	BC016637|Gtf2b|229906|general transcription factor IIB	NM_145546|Gtf2b|229906|general transcription factor IIB
mm9_v1_chr19_+_42245036_42245077	0.524515	GGAAUGU	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr2_+_32390780_32390878	0.520488	GGAAUGU	AK131145|Fam102a|98952|family with sequence similarity 102, member A	AK170536|Fam102a|98952|family with sequence similarity 102, member A	AK049032|Fam102a|98952|family with sequence similarity 102, member A	NM_153560|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr6_+_17413930_17414106	0.517675	GGAAUGU	NM_008591|Met|17295|met proto-oncogene	AK170560|Met|17295|met proto-oncogene	AK148258|Met|17295|met proto-oncogene
mm9_v1_chr3_-_105604199_105604320	0.510676	GGAAUGU	AK152504|Rap1a|109905|RAS-related protein-1a	AK030897|Rap1a|109905|RAS-related protein-1a	BC051419|Rap1a|109905|RAS-related protein-1a	NM_145541|Rap1a|109905|RAS-related protein-1a
mm9_v1_chr11_-_90499370_90499421	0.506915	GGAAUGU	BC032881|Stxbp4|20913|syntaxin binding protein 4	AK012293|Stxbp4|20913|syntaxin binding protein 4	AK032998|Stxbp4|20913|syntaxin binding protein 4	AK049001|Stxbp4|20913|syntaxin binding protein 4	NM_011505|Stxbp4|20913|syntaxin binding protein 4
mm9_v1_chr8_+_77517536_77517607	0.502121	GGAAUGU	AK156670|Hmgxb4|70823|HMG box domain containing 4	AK014640|Hmgxb4|70823|HMG box domain containing 4	BC048188|Hmgxb4|70823|HMG box domain containing 4	BC049800|Hmgxb4|70823|HMG box domain containing 4	NM_178017|Hmgxb4|70823|HMG box domain containing 4	BC023721|Hmgxb4|70823|HMG box domain containing 4
mm9_v1_chr4_+_128404814_128404885	0.502058	GGAAUGU	NM_001195083|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC051657|Phc2|54383|polyhomeotic-like 2 (Drosophila)	AB062362|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC071246|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr9_-_44575861_44575929	0.497205	GGAAUGU	BC034754|Arcn1|213827|archain 1	BC083152|Arcn1|213827|archain 1	BC017124|Arcn1|213827|archain 1	AK031385|Arcn1|213827|archain 1	BC033387|Arcn1|213827|archain 1	NM_145985|Arcn1|213827|archain 1	AK154066|Arcn1|213827|archain 1	AK028556|Arcn1|213827|archain 1	AK128973|Arcn1|213827|archain 1	BC023728|Arcn1|213827|archain 1	AK147747|Arcn1|213827|archain 1	AK047995|Arcn1|213827|archain 1
mm9_v1_chr1_+_12682510_12682540	0.496665	GGAAUGU	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chrX_+_135751704_135751704	0.484028	GGAAUGU	NM_001164631|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164632|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1	NM_001164633|Mum1l1|245631|melanoma associated antigen (mutated) 1-like 1
mm9_v1_chr17_+_83750246_83750339	0.482658	GGAAUGU	AK144604|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114361|Eml4|78798|echinoderm microtubule associated protein like 4	NM_001114362|Eml4|78798|echinoderm microtubule associated protein like 4	NM_199466|Eml4|78798|echinoderm microtubule associated protein like 4	BC067011|Eml4|78798|echinoderm microtubule associated protein like 4	BC070427|Eml4|78798|echinoderm microtubule associated protein like 4	BC065178|Eml4|78798|echinoderm microtubule associated protein like 4	BC066099|Eml4|78798|echinoderm microtubule associated protein like 4	BC079619|Eml4|78798|echinoderm microtubule associated protein like 4
mm9_v1_chr7_-_125999115_125999232	0.4794	GGAAUGU	BC055941|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK082978|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	NM_001168220|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK009230|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK083845|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene	AK166956|2310008H09Rik|66356|RIKEN cDNA 2310008H09 gene
mm9_v1_chr9_-_44042043_44042131	0.476268	GGAAUGU	BC125285|Cbl|12402|Casitas B-lineage lymphoma	X57111|Cbl|12402|Casitas B-lineage lymphoma	AK153915|Cbl|12402|Casitas B-lineage lymphoma	AK163907|Cbl|12402|Casitas B-lineage lymphoma	NM_007619|Cbl|12402|Casitas B-lineage lymphoma	AK029826|Cbl|12402|Casitas B-lineage lymphoma
mm9_v1_chr2_+_57090707_57090899	0.475387	GGAAUGU	BC021359|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	NM_010274|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK167152|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	U60987|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK034353|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	AK151189|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial	D50430|Gpd2|14571|glycerol phosphate dehydrogenase 2, mitochondrial
mm9_v1_chr1_+_138521477_138521641	0.474688	GGAAUGU	NM_001160251|Zfp281|226442|zinc finger protein 281	NM_177643|Zfp281|226442|zinc finger protein 281	BC003243|Zfp281|226442|zinc finger protein 281	BC062153|Zfp281|226442|zinc finger protein 281	AK157189|Zfp281|226442|zinc finger protein 281	AK142218|Zfp281|226442|zinc finger protein 281
mm9_v1_chr7_+_133903118_133903185	0.47377	GGAAUGU	NM_011952|Mapk3|26417|mitogen-activated protein kinase 3	BC029712|Mapk3|26417|mitogen-activated protein kinase 3	Z14249|Mapk3|26417|mitogen-activated protein kinase 3
mm9_v1_chr3_+_97705125_97705203	0.472191	GGAAUGU	AK010363|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK034973|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK017237|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK037918|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK088514|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK134215|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	NM_011342|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK089928|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	BC009024|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	U91538|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
mm9_v1_chr11_-_98010872_98010958	0.469866	GGAAUGU	AK220232|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK161566|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK144786|Fbxl20|72194|F-box and leucine-rich repeat protein 20	NM_028149|Fbxl20|72194|F-box and leucine-rich repeat protein 20	AK012109|Fbxl20|72194|F-box and leucine-rich repeat protein 20
mm9_v1_chr9_-_106691395_106691543	0.469442	GGAAUGU	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr8_-_92872139_92872206	0.467784	GGAAUGU	AK082602|Tox3|244579|TOX high mobility group box family member 3	NM_172913|Tox3|244579|TOX high mobility group box family member 3
mm9_v1_chr3_+_95119155_95119195	0.461929	GGAAUGU	AY029532|Lass2|76893|LAG1 homolog, ceramide synthase 2	NM_029789|Lass2|76893|LAG1 homolog, ceramide synthase 2	AK050161|Lass2|76893|LAG1 homolog, ceramide synthase 2	AK159325|Lass2|76893|LAG1 homolog, ceramide synthase 2	AK146106|Lass2|76893|LAG1 homolog, ceramide synthase 2	BC006847|Lass2|76893|LAG1 homolog, ceramide synthase 2
mm9_v1_chr15_-_96291163_96291288	0.461293	GGAAUGU	AK129478|Scaf11|72193|SR-related CTD-associated factor 11	AK034674|Scaf11|72193|SR-related CTD-associated factor 11	BC058682|Scaf11|72193|SR-related CTD-associated factor 11	NM_028148|Scaf11|72193|SR-related CTD-associated factor 11
mm9_v1_chr14_-_17407701_17408109	0.460055	GGAAUGU	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chr5_-_5380077_5380250	0.459411	GGAAUGU	AK129226|Cdk14|18647|cyclin-dependent kinase 14	AK016370|Cdk14|18647|cyclin-dependent kinase 14	AK051411|Cdk14|18647|cyclin-dependent kinase 14	AK083790|Cdk14|18647|cyclin-dependent kinase 14	AF033655|Cdk14|18647|cyclin-dependent kinase 14	AK051283|Cdk14|18647|cyclin-dependent kinase 14	AK045083|Cdk14|18647|cyclin-dependent kinase 14	NM_011074|Cdk14|18647|cyclin-dependent kinase 14
mm9_v1_chr16_+_31664022_31664124	0.456778	GGAAUGU	AK220189|Dlg1|13383|discs, large homolog 1 (Drosophila)	BC057118|Dlg1|13383|discs, large homolog 1 (Drosophila)	NM_007862|Dlg1|13383|discs, large homolog 1 (Drosophila)
mm9_v1_chr5_-_92512683_92512782	0.454639	GGAAUGU	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr6_-_86619001_86619180	0.453578	GGAAUGU	CT010233|Mxd1|17119|MAX dimerization protein 1	L38926|Mxd1|17119|MAX dimerization protein 1	X83106|Mxd1|17119|MAX dimerization protein 1	BC034860|Mxd1|17119|MAX dimerization protein 1	U20614|Mxd1|17119|MAX dimerization protein 1	AK036504|Mxd1|17119|MAX dimerization protein 1	AK151882|Mxd1|17119|MAX dimerization protein 1	AK153303|Mxd1|17119|MAX dimerization protein 1	AK151114|Mxd1|17119|MAX dimerization protein 1	AK151014|Mxd1|17119|MAX dimerization protein 1	AK151305|Mxd1|17119|MAX dimerization protein 1	NM_010751|Mxd1|17119|MAX dimerization protein 1
mm9_v1_chr3_-_116365414_116365594	0.449103	GGAAUGU	AK135865|Hiat1|15247|hippocampus abundant gene transcript 1	BC118047|Hiat1|15247|hippocampus abundant gene transcript 1	D88315|Hiat1|15247|hippocampus abundant gene transcript 1	AK004779|Hiat1|15247|hippocampus abundant gene transcript 1	AK169626|Hiat1|15247|hippocampus abundant gene transcript 1	AK158838|Hiat1|15247|hippocampus abundant gene transcript 1	NM_008246|Hiat1|15247|hippocampus abundant gene transcript 1
mm9_v1_chrX_+_155810110_155810226	0.445739	GGAAUGU	AK031113|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK030774|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK166629|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK166852|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	NM_025437|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK005185|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012714|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012233|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK021283|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK090053|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK165574|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK007301|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK077710|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	BC027284|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK134827|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK134969|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked	AK012464|Eif1ax|66235|eukaryotic translation initiation factor 1A, X-linked
mm9_v1_chr16_-_22265901_22266018	0.442027	GGAAUGU	BC057996|Tra2b|20462|transformer 2 beta homolog (Drosophila)	X80232|Tra2b|20462|transformer 2 beta homolog (Drosophila)	BC086795|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK080378|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK169483|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK152519|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK167387|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK077418|Tra2b|20462|transformer 2 beta homolog (Drosophila)	BC061177|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK150007|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK049573|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK152761|Tra2b|20462|transformer 2 beta homolog (Drosophila)	AK167544|Tra2b|20462|transformer 2 beta homolog (Drosophila)	NM_009186|Tra2b|20462|transformer 2 beta homolog (Drosophila)
mm9_v1_chr7_-_121398132_121398234	0.433437	GGAAUGU	AF231925|Copb1|70349|coatomer protein complex, subunit beta 1	AK172214|Copb1|70349|coatomer protein complex, subunit beta 1	BC030837|Copb1|70349|coatomer protein complex, subunit beta 1	NM_033370|Copb1|70349|coatomer protein complex, subunit beta 1	AK082977|Copb1|70349|coatomer protein complex, subunit beta 1	AK149828|Copb1|70349|coatomer protein complex, subunit beta 1	AK011453|Copb1|70349|coatomer protein complex, subunit beta 1	AK152222|Copb1|70349|coatomer protein complex, subunit beta 1	AK161544|Copb1|70349|coatomer protein complex, subunit beta 1	AK135168|Copb1|70349|coatomer protein complex, subunit beta 1
mm9_v1_chr14_-_46008425_46008617	0.423332	GGAAUGU	BC092047|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	BC031116|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK018499|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK050266|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AJ001006|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	NM_019425|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007722|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK167870|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK168074|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007647|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK008566|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK002466|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK028693|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK007764|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1	AK011098|Gnpnat1|54342|glucosamine-phosphate N-acetyltransferase 1
mm9_v1_chr4_-_26273772_26273798	0.419509	GGAAUGU	AK030141|Manea|242362|mannosidase, endo-alpha	BC067076|Manea|242362|mannosidase, endo-alpha	NM_172865|Manea|242362|mannosidase, endo-alpha
mm9_v1_chr9_-_61918412_61918412	0.414433	GGAAUGU	BC094587|Glce|93683|glucuronyl C5-epimerase	NM_033320|Glce|93683|glucuronyl C5-epimerase
mm9_v1_chrX_+_12858142_12858215	0.411924	GGAAUGU	AK140990|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	NM_010028|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	Z38117|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	AK163250|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC150862|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	BC172016|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	L25126|Ddx3x|13205|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
mm9_v1_chr11_-_4965279_4965341	0.410258	GGAAUGU	BC031785|Gas2l1|78926|growth arrest-specific 2 like 1	AK082864|Gas2l1|78926|growth arrest-specific 2 like 1	AK019661|Gas2l1|78926|growth arrest-specific 2 like 1	AK052229|Gas2l1|78926|growth arrest-specific 2 like 1	NM_001190406|Gas2l1|78926|growth arrest-specific 2 like 1	NM_001190408|Gas2l1|78926|growth arrest-specific 2 like 1	NM_030228|Gas2l1|78926|growth arrest-specific 2 like 1	NM_144560|Gas2l1|78926|growth arrest-specific 2 like 1
mm9_v1_chr15_+_99803210_99803320	0.408034	GGAAUGU	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chrX_+_7339786_7339905	0.402686	GGAAUGU	NM_001105196|Tcfe3|209446|transcription factor E3	NM_172472|Tcfe3|209446|transcription factor E3	AK139756|Tcfe3|209446|transcription factor E3	BC056358|Tcfe3|209446|transcription factor E3	BC063047|Tcfe3|209446|transcription factor E3	AK144751|Tcfe3|209446|transcription factor E3	AK145832|Tcfe3|209446|transcription factor E3	AK145029|Tcfe3|209446|transcription factor E3	AK144657|Tcfe3|209446|transcription factor E3	AK154690|Tcfe3|209446|transcription factor E3	BC051568|Tcfe3|209446|transcription factor E3	AK089762|Tcfe3|209446|transcription factor E3	AK159162|Tcfe3|209446|transcription factor E3	BC032963|Tcfe3|209446|transcription factor E3
mm9_v1_chr16_-_17928270_17928336	0.400427	GGAAUGU	AK159289|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	AK170191|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	NM_153150|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr11_-_74537877_74537918	0.39867	GGAAUGU	NM_013625|Pafah1b1|18472|platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
mm9_v1_chr5_+_9100681_9100767	0.39797	GGAAUGU	AK140314|4930420K17Rik|652925|RIKEN cDNA 4930420K17 gene	NM_001081029|4930420K17Rik|652925|RIKEN cDNA 4930420K17 gene	AK087170|4930420K17Rik|652925|RIKEN cDNA 4930420K17 gene
mm9_v1_chr17_-_32525894_32525894	0.395798	GGAAUGU	NM_011717|Wiz|22404|widely-interspaced zinc finger motifs
mm9_v1_chr5_-_23122181_23122418	0.393154	GGAAUGU	AB006036|Srpk2|20817|serine/arginine-rich protein specific kinase 2	BC020178|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK136861|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK169580|Srpk2|20817|serine/arginine-rich protein specific kinase 2	NM_009274|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr8_+_71612616_71612811	0.378934	GGAAUGU	AK151200|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	NM_007509|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK170110|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169155|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169270|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151322|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152718|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152766|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159133|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159153|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159701|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160080|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159986|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169420|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160854|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK146499|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK153341|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK168852|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC046302|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC012497|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	Y12634|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC085300|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK166669|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK182828|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205457|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK206476|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209216|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209288|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209472|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209631|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK212223|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK213950|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215019|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215298|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK216725|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK217254|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK220015|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK214894|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK185732|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK191995|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr7_-_152125823_152125829	0.376449	GGAAUGU	EU600170|Ccnd1|12443|cyclin D1	NM_007631|Ccnd1|12443|cyclin D1
mm9_v1_chr1_-_151808361_151808434	0.372845	GGAAUGU	M72394|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK144750|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	AK172121|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	BC003816|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)	NM_008869|Pla2g4a|18783|phospholipase A2, group IVA (cytosolic, calcium-dependent)
mm9_v1_chr15_-_79377170_79377216	0.370627	GGAAUGU	BC096036|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_001040187|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	NM_199080|Ddx17|67040|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
mm9_v1_chr7_+_97278722_97279067	0.365475	GGAAUGU	AK170373|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC025566|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	NM_146194|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC057683|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC021491|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK144960|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC023843|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK220291|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC011470|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK162360|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AY206701|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr2_-_32568175_32568325	0.360852	GGAAUGU	AF327431|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)	AK206169|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)	BC003901|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)	AK157340|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)	AK144607|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)	AK143217|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)	NM_130860|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)
mm9_v1_chr12_+_72932064_72932126	0.359551	GGAAUGU	BC076585|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_026102|Daam1|208846|dishevelled associated activator of morphogenesis 1	NM_172464|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK129185|Daam1|208846|dishevelled associated activator of morphogenesis 1	AK165335|Daam1|208846|dishevelled associated activator of morphogenesis 1	BC038403|Daam1|208846|dishevelled associated activator of morphogenesis 1
mm9_v1_chr10_+_17443024_17443226	0.354261	GGAAUGU	AK131664|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	AK133791|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	NM_010828|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	BC057126|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	U86445|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	Y15163|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm9_v1_chr2_-_173102033_173102038	0.353545	GGAAUGU	AK008976|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	AK136450|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	NM_022995|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr16_-_31201251_31201348	0.334984	GGAAUGU	AK032916|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK129041|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK044812|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK020591|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	NM_030138|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chr13_+_113254277_113254381	0.329832	GGAAUGU	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chr12_+_54349663_54349663	0.328618	GGAAUGU	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr6_-_88468710_88468869	0.323626	GGAAUGU	AF145253|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AF222743|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK167484|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	BC003707|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK159349|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK153055|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AK088473|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	NM_016906|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)	AB032902|Sec61a1|53421|Sec61 alpha 1 subunit (S. cerevisiae)
mm9_v1_chr3_-_84024766_84024812	0.322567	GGAAUGU	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr17_+_78599556_78599594	0.318178	GGAAUGU	NM_015800|Crim1|50766|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm9_v1_chr16_+_5050149_5050235	0.313539	GGAAUGU	AK019173|Ubn1|170644|ubinuclein 1	AK147571|Ubn1|170644|ubinuclein 1	NM_026666|Ubn1|170644|ubinuclein 1	AK020146|Ubn1|170644|ubinuclein 1
mm9_v1_chr5_-_5514787_5514975	0.312393	GGAAUGU	NM_001193660|Cldn12|64945|claudin 12	AK166110|Cldn12|64945|claudin 12	AK049331|Cldn12|64945|claudin 12	AK132155|Cldn12|64945|claudin 12	NM_001193659|Cldn12|64945|claudin 12	NM_001193661|Cldn12|64945|claudin 12	AK128999|Cldn12|64945|claudin 12	BC024057|Cldn12|64945|claudin 12	NM_022890|Cldn12|64945|claudin 12
mm9_v1_chr3_+_122432075_122432112	0.311784	GGAAUGU	AF541937|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	NM_153422|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC119137|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC120486|Pde5a|242202|phosphodiesterase 5A, cGMP-specific
mm9_v1_chr7_+_19669194_19669289	0.311662	GGAAUGU	NM_001190490|Dmpk|13400|dystrophia myotonica-protein kinase	NM_001190491|Dmpk|13400|dystrophia myotonica-protein kinase	NM_032418|Dmpk|13400|dystrophia myotonica-protein kinase	BC056615|Dmpk|13400|dystrophia myotonica-protein kinase	BC024150|Dmpk|13400|dystrophia myotonica-protein kinase	BC075715|Dmpk|13400|dystrophia myotonica-protein kinase
mm9_v1_chr8_-_81345034_81345050	0.306836	GGAAUGU	AK158236|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_001191004|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)	NM_030145|Lsm6|78651|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm9_v1_chr8_-_26951228_26951265	0.305484	GGAAUGU	AK087934|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	AK146938|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	BC012957|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	AB020983|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	AK132471|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)	NM_011791|Ash2l|23808|ash2 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr1_-_137327006_137327084	0.303052	GGAAUGU	AJ309238|Ipo9|226432|importin 9	AF273672|Ipo9|226432|importin 9	AF273673|Ipo9|226432|importin 9	AK036687|Ipo9|226432|importin 9	BC098508|Ipo9|226432|importin 9	BC056469|Ipo9|226432|importin 9	BC079546|Ipo9|226432|importin 9	NM_153774|Ipo9|226432|importin 9
mm9_v1_chr2_+_109532592_109532697	0.300542	GGAAUGU	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr4_-_133843139_133843188	0.299945	GGAAUGU	AK053750|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK157013|Pdik1l|230809|PDLIM1 interacting kinase 1 like	BC027088|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141566|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK139413|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK141823|Pdik1l|230809|PDLIM1 interacting kinase 1 like	AK162350|Pdik1l|230809|PDLIM1 interacting kinase 1 like	NM_001163794|Pdik1l|230809|PDLIM1 interacting kinase 1 like
mm9_v1_chr12_+_112127468_112127521	0.29785	GGAAUGU	AK147592|Tecpr2|104859|tectonin beta-propeller repeat containing 2	NM_001081057|Tecpr2|104859|tectonin beta-propeller repeat containing 2	AK031736|Tecpr2|104859|tectonin beta-propeller repeat containing 2	AK129113|Tecpr2|104859|tectonin beta-propeller repeat containing 2
mm9_v1_chr8_+_41597112_41597221	0.296835	GGAAUGU	AK171221|Vps37a|52348|vacuolar protein sorting 37A (yeast)	NM_033560|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170961|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK171055|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK137479|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK016385|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK048942|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK054055|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170280|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK157507|Vps37a|52348|vacuolar protein sorting 37A (yeast)	AK170943|Vps37a|52348|vacuolar protein sorting 37A (yeast)	BC039290|Vps37a|52348|vacuolar protein sorting 37A (yeast)	BC110396|Vps37a|52348|vacuolar protein sorting 37A (yeast)
mm9_v1_chr11_+_77306825_77306918	0.294504	GGAAUGU	BC079870|Git1|216963|G protein-coupled receptor kinase-interactor 1	NM_001004144|Git1|216963|G protein-coupled receptor kinase-interactor 1
mm9_v1_chr11_-_88922061_88922089	0.292298	GGAAUGU	AK147841|Dgke|56077|diacylglycerol kinase, epsilon	NM_019505|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr11_+_93747419_93747532	0.286272	GGAAUGU	AK153919|Mbtd1|103537|mbt domain containing 1	BC064014|Mbtd1|103537|mbt domain containing 1	BC062907|Mbtd1|103537|mbt domain containing 1	NM_134012|Mbtd1|103537|mbt domain containing 1
mm9_v1_chr16_+_57121795_57121895	0.284422	GGAAUGU	AK145458|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC057096|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK012084|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK083586|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK150429|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	NM_138599|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK161720|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC139420|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC139421|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK169809|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK122356|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr12_-_100139666_100139693	0.283495	GGAAUGU	AK081694|Eml5|319670|echinoderm microtubule associated protein like 5	NM_001081191|Eml5|319670|echinoderm microtubule associated protein like 5
mm9_v1_chr11_-_99092319_99092333	0.278705	GGAAUGU	BC065043|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	NM_020618|Smarce1|57376|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm9_v1_chrX_+_138662479_138662479	0.277673	GGAAUGU	NM_001161430|Nxt2|237082|nuclear transport factor 2-like export factor 2
mm9_v1_chr8_-_38015410_38015497	0.270386	GGAAUGU	AK053142|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene	AK043205|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene	AK045326|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene	NM_178735|A730069N07Rik|244425|RIKEN cDNA A730069N07 gene
mm9_v1_chr7_+_148661138_148661190	0.269694	GGAAUGU	BC083070|Tspan4|64540|tetraspanin 4	NM_053082|Tspan4|64540|tetraspanin 4	AK156959|Tspan4|64540|tetraspanin 4
mm9_v1_chr4_+_154865439_154865649	0.269644	GGAAUGU	NM_001160016|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_001160017|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	NM_008142|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK156101|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	BC013058|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK163844|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr10_+_89207730_89207982	0.267216	GGAAUGU	AK141050|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	NM_029166|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AB093261|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC030383|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK033300|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC132134|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	BC138092|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like	AK087280|Uhrf1bp1l|75089|UHRF1 (ICBP90) binding protein 1-like
mm9_v1_chr11_-_82684653_82684724	0.266492	GGAAUGU	AK159442|Rffl|67338|ring finger and FYVE like domain containing protein	AK150541|Rffl|67338|ring finger and FYVE like domain containing protein	AK169988|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001007465|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164569|Rffl|67338|ring finger and FYVE like domain containing protein	NM_001164571|Rffl|67338|ring finger and FYVE like domain containing protein
mm9_v1_chr14_+_22319075_22319102	0.265793	GGAAUGU	AK052307|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	NM_017479|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	AF222800|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4
mm9_v1_chr4_+_140857147_140857182	0.263834	GGAAUGU	AK137704|Epha2|13836|Eph receptor A2	AK144202|Epha2|13836|Eph receptor A2	NM_010139|Epha2|13836|Eph receptor A2	U07634|Epha2|13836|Eph receptor A2	BC140960|Epha2|13836|Eph receptor A2	X78339|Epha2|13836|Eph receptor A2
mm9_v1_chr2_-_11423673_11423729	0.263689	GGAAUGU	BC052400|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	AK054285|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177752|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177753|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177754|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177755|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177756|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_001177757|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	NM_133232|Pfkfb3|170768|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm9_v1_chr12_-_47919695_47919761	0.262467	GGAAUGU	AF232828|Nova1|664883|neuro-oncological ventral antigen 1	NM_021361|Nova1|664883|neuro-oncological ventral antigen 1
mm9_v1_chr5_-_108416027_108416163	0.260559	GGAAUGU	BC055842|Fam69a|67266|family with sequence similarity 69, member A	BC095935|Fam69a|67266|family with sequence similarity 69, member A	AK008504|Fam69a|67266|family with sequence similarity 69, member A	BC116683|Fam69a|67266|family with sequence similarity 69, member A	AK153488|Fam69a|67266|family with sequence similarity 69, member A	BC061013|Fam69a|67266|family with sequence similarity 69, member A	AK038811|Fam69a|67266|family with sequence similarity 69, member A	AK048979|Fam69a|67266|family with sequence similarity 69, member A	AK050305|Fam69a|67266|family with sequence similarity 69, member A	AK013580|Fam69a|67266|family with sequence similarity 69, member A	NM_026062|Fam69a|67266|family with sequence similarity 69, member A
mm9_v1_chr9_+_108698323_108698461	0.258088	GGAAUGU	BC039922|Ip6k2|76500|inositol hexaphosphate kinase 2	NM_029634|Ip6k2|76500|inositol hexaphosphate kinase 2	BC060059|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr5_+_77403725_77403746	0.249207	GGAAUGU	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr10_+_52410306_52410508	0.243349	GGAAUGU	NM_178675|Slc35f1|215085|solute carrier family 35, member F1	AK038601|Slc35f1|215085|solute carrier family 35, member F1	AK053426|Slc35f1|215085|solute carrier family 35, member F1	AK139331|Slc35f1|215085|solute carrier family 35, member F1	AK048957|Slc35f1|215085|solute carrier family 35, member F1	AK165021|Slc35f1|215085|solute carrier family 35, member F1	AK053545|Slc35f1|215085|solute carrier family 35, member F1	AK083768|Slc35f1|215085|solute carrier family 35, member F1	AK166268|Slc35f1|215085|solute carrier family 35, member F1	BC059075|Slc35f1|215085|solute carrier family 35, member F1	AK163806|Slc35f1|215085|solute carrier family 35, member F1
mm9_v1_chr13_+_54723144_54723248	0.241861	GGAAUGU	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr5_-_92512486_92512611	0.241175	GGAAUGU	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr2_-_166539288_166539340	0.239743	GGAAUGU	AK156208|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	AK173168|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	NM_177782|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm9_v1_chr3_-_84386546_84386619	0.238218	GGAAUGU	NM_001081093|Arfip1|99889|ADP-ribosylation factor interacting protein 1
mm9_v1_chr3_+_87329497_87329593	0.237619	GGAAUGU	NM_001083318|Etv3|27049|ets variant gene 3	NM_012051|Etv3|27049|ets variant gene 3	AF218539|Etv3|27049|ets variant gene 3	AK147552|Etv3|27049|ets variant gene 3	AK163509|Etv3|27049|ets variant gene 3	AK155080|Etv3|27049|ets variant gene 3	AK089640|Etv3|27049|ets variant gene 3	AK156824|Etv3|27049|ets variant gene 3	AK155957|Etv3|27049|ets variant gene 3	BC078636|Etv3|27049|ets variant gene 3	BC057151|Etv3|27049|ets variant gene 3
mm9_v1_chr8_+_112392441_112392545	0.237598	GGAAUGU	AK165088|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048472|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117961|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	NM_001122594|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	BC117962|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2	AK048260|Phlpp2|244650|PH domain and leucine rich repeat protein phosphatase 2
mm9_v1_chr8_+_74685098_74685285	0.234235	GGAAUGU	NM_023126|Rab8a|17274|RAB8A, member RAS oncogene family	AK076048|Rab8a|17274|RAB8A, member RAS oncogene family	AK147178|Rab8a|17274|RAB8A, member RAS oncogene family	AK079306|Rab8a|17274|RAB8A, member RAS oncogene family	S53270|Rab8a|17274|RAB8A, member RAS oncogene family	AK009259|Rab8a|17274|RAB8A, member RAS oncogene family	AK010862|Rab8a|17274|RAB8A, member RAS oncogene family	AK080740|Rab8a|17274|RAB8A, member RAS oncogene family	AK165690|Rab8a|17274|RAB8A, member RAS oncogene family	AB232600|Rab8a|17274|RAB8A, member RAS oncogene family	BC019990|Rab8a|17274|RAB8A, member RAS oncogene family	AY974570|Rab8a|17274|RAB8A, member RAS oncogene family
mm9_v1_chr18_-_3337505_3337586	0.233181	GGAAUGU	AK009841|Crem|12916|cAMP responsive element modulator	AK161366|Crem|12916|cAMP responsive element modulator	AK010806|Crem|12916|cAMP responsive element modulator	NM_001110850|Crem|12916|cAMP responsive element modulator	NM_001110851|Crem|12916|cAMP responsive element modulator	NM_001110852|Crem|12916|cAMP responsive element modulator	NM_001110856|Crem|12916|cAMP responsive element modulator	NM_001110857|Crem|12916|cAMP responsive element modulator	NM_001110858|Crem|12916|cAMP responsive element modulator	NM_001110859|Crem|12916|cAMP responsive element modulator	NM_013498|Crem|12916|cAMP responsive element modulator
mm9_v1_chr4_-_44180323_44180519	0.230498	GGAAUGU	BC062976|Rnf38|73469|ring finger protein 38	BC060730|Rnf38|73469|ring finger protein 38	NM_175201|Rnf38|73469|ring finger protein 38	AK006888|Rnf38|73469|ring finger protein 38
mm9_v1_chr15_-_50721552_50721725	0.230444	GGAAUGU	BC099962|Trps1|83925|trichorhinophalangeal syndrome I (human)	AF346836|Trps1|83925|trichorhinophalangeal syndrome I (human)	NM_032000|Trps1|83925|trichorhinophalangeal syndrome I (human)
mm9_v1_chr19_-_28085534_28085655	0.225974	GGAAUGU	AK030008|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK140928|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	BC017598|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	AK041120|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)	NM_011265|Rfx3|19726|regulatory factor X, 3 (influences HLA class II expression)
mm9_v1_chr3_+_89534639_89534732	0.223762	GGAAUGU	NM_001146296|Adar|56417|adenosine deaminase, RNA-specific	NM_019655|Adar|56417|adenosine deaminase, RNA-specific	AK089451|Adar|56417|adenosine deaminase, RNA-specific	BC042505|Adar|56417|adenosine deaminase, RNA-specific	AF052506|Adar|56417|adenosine deaminase, RNA-specific	AF291050|Adar|56417|adenosine deaminase, RNA-specific	AF291875|Adar|56417|adenosine deaminase, RNA-specific	AF291876|Adar|56417|adenosine deaminase, RNA-specific	AF291877|Adar|56417|adenosine deaminase, RNA-specific	CT010323|Adar|56417|adenosine deaminase, RNA-specific
mm9_v1_chrX_+_82819294_82819360	0.223534	GGAAUGU	AK220185|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3	NM_025729|Tab3|66724|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm9_v1_chr4_-_128925666_128925738	0.221792	GGAAUGU	AK154932|C77080|97130|expressed sequence C77080	NM_001033189|C77080|97130|expressed sequence C77080
mm9_v1_chr16_+_7069927_7069947	0.220589	GGAAUGU	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr4_-_87679175_87679310	0.218803	GGAAUGU	BC021420|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	AF372456|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	NM_027326|Mllt3|70122|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm9_v1_chr4_-_55545337_55545348	0.217691	GGAAUGU	U70662|Klf4|16600|Kruppel-like factor 4 (gut)	AK144942|Klf4|16600|Kruppel-like factor 4 (gut)	AK155343|Klf4|16600|Kruppel-like factor 4 (gut)	NM_010637|Klf4|16600|Kruppel-like factor 4 (gut)
mm9_v1_chr5_+_106305563_106305620	0.217303	GGAAUGU	AK017693|Zfp326|54367|zinc finger protein 326	AK032801|Zfp326|54367|zinc finger protein 326	BC039041|Zfp326|54367|zinc finger protein 326	NM_018759|Zfp326|54367|zinc finger protein 326	BC005567|Zfp326|54367|zinc finger protein 326	BC037055|Zfp326|54367|zinc finger protein 326	AK146438|Zfp326|54367|zinc finger protein 326	AB012725|Zfp326|54367|zinc finger protein 326
mm9_v1_chr17_-_46169322_46169332	0.211684	GGAAUGU	NM_001025250|Vegfa|22339|vascular endothelial growth factor A	NM_001025257|Vegfa|22339|vascular endothelial growth factor A	NM_009505|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr2_+_163820920_163821078	0.211456	GGAAUGU	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr4_-_122563074_122563173	0.207432	GGAAUGU	AK169652|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK144094|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK165565|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK171388|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK162629|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK137222|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK128889|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	L12367|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK158150|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK170901|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK156556|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK053351|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	NM_007598|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)
mm9_v1_chr7_-_123586952_123586976	0.204098	GGAAUGU	AK163446|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK049609|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	U52193|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK019194|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	AK140908|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	NM_011083|Pik3c2a|18704|phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide
mm9_v1_chr1_+_157005804_157006022	0.203307	GGAAUGU	NM_021433|Stx6|58244|syntaxin 6	AK018167|Stx6|58244|syntaxin 6	AK031673|Stx6|58244|syntaxin 6	AK159392|Stx6|58244|syntaxin 6	AK019106|Stx6|58244|syntaxin 6	AK044905|Stx6|58244|syntaxin 6	AK049124|Stx6|58244|syntaxin 6	AK009690|Stx6|58244|syntaxin 6	AK151549|Stx6|58244|syntaxin 6	BC029205|Stx6|58244|syntaxin 6	AF237814|Stx6|58244|syntaxin 6
mm9_v1_chrX_-_54646073_54646213	0.201103	GGAAUGU	AK207357|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237846|Rbmx|19655|RNA binding motif protein, X chromosome	AJ237847|Rbmx|19655|RNA binding motif protein, X chromosome	AK165006|Rbmx|19655|RNA binding motif protein, X chromosome	BC003710|Rbmx|19655|RNA binding motif protein, X chromosome	AK083899|Rbmx|19655|RNA binding motif protein, X chromosome	AK135164|Rbmx|19655|RNA binding motif protein, X chromosome	NM_001166623|Rbmx|19655|RNA binding motif protein, X chromosome	NM_011252|Rbmx|19655|RNA binding motif protein, X chromosome
mm9_v1_chr1_-_174136874_174136913	0.200823	GGAAUGU	NM_011063|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr4_+_11413062_11413204	0.199059	GGAAUGU	AK170075|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK155623|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	NM_001081183|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK076731|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK162531|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	BC033309|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK052499|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK034232|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene	AK122509|1110037F02Rik|66185|RIKEN cDNA 1110037F02 gene
mm9_v1_chr3_+_96500294_96500403	0.198636	GGAAUGU	NM_146135|Pias3|229615|protein inhibitor of activated STAT 3	AK040619|Pias3|229615|protein inhibitor of activated STAT 3	AK077551|Pias3|229615|protein inhibitor of activated STAT 3	AK085503|Pias3|229615|protein inhibitor of activated STAT 3	BC023128|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr5_+_122734363_122734418	0.194184	GGAAUGU	AK135118|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK083481|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	AK078914|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	BC068149|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)	NM_177242|Pptc7|320717|PTC7 protein phosphatase homolog (S. cerevisiae)
mm9_v1_chr12_+_37835132_37835270	0.194012	GGAAUGU	AK028352|Meox2|17286|mesenchyme homeobox 2	NM_008584|Meox2|17286|mesenchyme homeobox 2	AK031152|Meox2|17286|mesenchyme homeobox 2	BC002076|Meox2|17286|mesenchyme homeobox 2	AK142690|Meox2|17286|mesenchyme homeobox 2	Z16406|Meox2|17286|mesenchyme homeobox 2
mm9_v1_chr3_-_79371600_79371778	0.1933	GGAAUGU	NM_001162999|Fnip2|329679|folliculin interacting protein 2
mm9_v1_chr5_+_65522325_65522469	0.188247	GGAAUGU	BC057606|Klhl5|71778|kelch-like 5 (Drosophila)	NM_175174|Klhl5|71778|kelch-like 5 (Drosophila)
mm9_v1_chr4_+_32504409_32504501	0.186999	GGAAUGU	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr3_-_29912113_29912128	0.185959	GGAAUGU	AK085548|Mecom|14013|MDS1 and EVI1 complex locus	NM_007963|Mecom|14013|MDS1 and EVI1 complex locus
mm9_v1_chr13_-_9764376_9764487	0.182682	GGAAUGU	BC022945|Zmynd11|66505|zinc finger, MYND domain containing 11	AK077732|Zmynd11|66505|zinc finger, MYND domain containing 11	NM_144516|Zmynd11|66505|zinc finger, MYND domain containing 11
mm9_v1_chr10_+_87323855_87324094	0.181959	GGAAUGU	NM_001111274|Igf1|16000|insulin-like growth factor 1	NM_001111276|Igf1|16000|insulin-like growth factor 1	NM_184052|Igf1|16000|insulin-like growth factor 1	X04480|Igf1|16000|insulin-like growth factor 1	X04482|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr15_-_93105514_93105610	0.180656	GGAAUGU	AK147387|Gxylt1|223827|glucoside xylosyltransferase 1	NM_001033275|Gxylt1|223827|glucoside xylosyltransferase 1	BC141302|Gxylt1|223827|glucoside xylosyltransferase 1	BC171972|Gxylt1|223827|glucoside xylosyltransferase 1
mm9_v1_chr16_-_34514112_34514198	0.17544	GGAAUGU	BC157950|Kalrn|545156|kalirin, RhoGEF kinase	BC172101|Kalrn|545156|kalirin, RhoGEF kinase	NM_001164268|Kalrn|545156|kalirin, RhoGEF kinase	NM_177357|Kalrn|545156|kalirin, RhoGEF kinase	AK147314|Kalrn|545156|kalirin, RhoGEF kinase	AK147518|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr1_+_12708582_12708625	0.17411	GGAAUGU	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr6_-_4036892_4036992	0.171824	GGAAUGU	AF007552|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	AK078796|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	BC005572|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	NM_009748|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)	AK053940|Bet1|12068|blocked early in transport 1 homolog (S. cerevisiae)
mm9_v1_chr19_+_41986360_41986656	0.169765	GGAAUGU	NM_023418|Pgam1|18648|phosphoglycerate mutase 1	BC002241|Pgam1|18648|phosphoglycerate mutase 1	BC106139|Pgam1|18648|phosphoglycerate mutase 1	BC005661|Pgam1|18648|phosphoglycerate mutase 1	AF283667|Pgam1|18648|phosphoglycerate mutase 1	AK004921|Pgam1|18648|phosphoglycerate mutase 1	AK009905|Pgam1|18648|phosphoglycerate mutase 1	AK144681|Pgam1|18648|phosphoglycerate mutase 1	AK153202|Pgam1|18648|phosphoglycerate mutase 1	AK159305|Pgam1|18648|phosphoglycerate mutase 1	AK150716|Pgam1|18648|phosphoglycerate mutase 1	AK152443|Pgam1|18648|phosphoglycerate mutase 1	AK165410|Pgam1|18648|phosphoglycerate mutase 1	AK168949|Pgam1|18648|phosphoglycerate mutase 1	BC083090|Pgam1|18648|phosphoglycerate mutase 1	BC066844|Pgam1|18648|phosphoglycerate mutase 1
mm9_v1_chr15_+_81230560_81230633	0.16831	GGAAUGU	AK042110|Xpnpep3|321003|X-prolyl aminopeptidase (aminopeptidase P) 3, putative	AK158394|Xpnpep3|321003|X-prolyl aminopeptidase (aminopeptidase P) 3, putative	AK088324|Xpnpep3|321003|X-prolyl aminopeptidase (aminopeptidase P) 3, putative	NM_177310|Xpnpep3|321003|X-prolyl aminopeptidase (aminopeptidase P) 3, putative	BC144717|Xpnpep3|321003|X-prolyl aminopeptidase (aminopeptidase P) 3, putative	BC137569|Xpnpep3|321003|X-prolyl aminopeptidase (aminopeptidase P) 3, putative
mm9_v1_chr2_-_153270059_153270214	0.168086	GGAAUGU	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr1_-_162281701_162281701	0.167496	GGAAUGU	AK147634|Rabgap1l|29809|RAB GTPase activating protein 1-like	NM_001038621|Rabgap1l|29809|RAB GTPase activating protein 1-like
mm9_v1_chr15_-_81021165_81021194	0.16694	GGAAUGU	AK044188|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	AK155821|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1	NM_001082536|Mkl1|223701|MKL (megakaryoblastic leukemia)/myocardin-like 1
mm9_v1_chr15_-_79664645_79664773	0.164929	GGAAUGU	BC011199|Cbx6|494448|chromobox homolog 6	BC048240|Cbx6|494448|chromobox homolog 6	AK004679|Cbx6|494448|chromobox homolog 6	AK090253|Cbx6|494448|chromobox homolog 6	AK146048|Cbx6|494448|chromobox homolog 6	AK146103|Cbx6|494448|chromobox homolog 6	AY394488|Npcd|504193|neuronal pentraxin chromo domain	AY394489|Npcd|504193|neuronal pentraxin chromo domain	AY395907|Npcd|504193|neuronal pentraxin chromo domain	AK035250|Cbx6|494448|chromobox homolog 6	NM_001013360|Npcd|504193|neuronal pentraxin chromo domain	NM_001013362|Npcd|504193|neuronal pentraxin chromo domain	NM_028763|Cbx6|494448|chromobox homolog 6
mm9_v1_chr3_-_146475652_146475990	0.16492	GGAAUGU	AK193506|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK204631|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK216103|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	J02626|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	BC054533|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK048319|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_011100|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK031441|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr2_-_91790504_91790533	0.161454	GGAAUGU	AK087503|Dgkz|104418|diacylglycerol kinase zeta	NM_001166597|Dgkz|104418|diacylglycerol kinase zeta
mm9_v1_chr4_+_137772474_137772594	0.150651	GGAAUGU	AK150784|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK166161|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_001122896|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_010470|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK004938|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK028181|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK050234|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK075725|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK043260|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK161041|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC020024|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC107687|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr2_+_109533719_109533771	0.148091	GGAAUGU	AY057914|Bdnf|12064|brain derived neurotrophic factor	EF125674|Bdnf|12064|brain derived neurotrophic factor	NM_001048142|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr10_-_116585527_116585608	0.145288	GGAAUGU	BC043109|Frs2|327826|fibroblast growth factor receptor substrate 2	NM_177798|Frs2|327826|fibroblast growth factor receptor substrate 2	AK028813|Frs2|327826|fibroblast growth factor receptor substrate 2	AK163442|Frs2|327826|fibroblast growth factor receptor substrate 2	BC055334|Frs2|327826|fibroblast growth factor receptor substrate 2	AK138144|Frs2|327826|fibroblast growth factor receptor substrate 2
mm9_v1_chr1_+_57434454_57434500	0.144618	GGAAUGU	NM_028546|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr10_+_111409750_111409849	0.142323	GGAAUGU	NM_178610|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK012108|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK045526|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK036447|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK146926|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC089510|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK011972|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK030560|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK032472|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK041854|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	AK168675|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)	BC094236|Krr1|52705|KRR1, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr6_-_126485370_126485572	0.140897	GGAAUGU	BC021787|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	AK146843|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	AF108659|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	L22218|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5	NM_145983|Kcna5|16493|potassium voltage-gated channel, shaker-related subfamily, member 5
mm9_v1_chr1_+_66747396_66747477	0.140462	GGAAUGU	AK150008|Rpe|66646|ribulose-5-phosphate-3-epimerase	BC019126|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK029088|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK007735|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK017774|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK088152|Rpe|66646|ribulose-5-phosphate-3-epimerase	NM_025683|Rpe|66646|ribulose-5-phosphate-3-epimerase	Z78161|Rpe|66646|ribulose-5-phosphate-3-epimerase	BC006953|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK185217|Rpe|66646|ribulose-5-phosphate-3-epimerase	AK193547|Rpe|66646|ribulose-5-phosphate-3-epimerase
mm9_v1_chr7_+_104728398_104728430	0.140293	GGAAUGU	AK134242|Rsf1|233532|remodeling and spacing factor 1	NM_001081267|Rsf1|233532|remodeling and spacing factor 1	AK138087|Rsf1|233532|remodeling and spacing factor 1	AK146675|Rsf1|233532|remodeling and spacing factor 1	BC085127|Rsf1|233532|remodeling and spacing factor 1	AK146154|Rsf1|233532|remodeling and spacing factor 1	AK032853|Rsf1|233532|remodeling and spacing factor 1
mm9_v1_chr5_-_36826896_36826947	0.131186	GGAAUGU	NM_001170454|Tada2b|231151|transcriptional adaptor 2B
mm9_v1_chr5_+_32913539_32913707	0.123928	GGAAUGU	AK035612|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK031316|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	AK052478|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	NM_009535|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	X67677|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1	BC010594|Yes1|22612|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm9_v1_chr8_+_3393005_3393067	0.122047	GGAAUGU	AK041423|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	NM_133962|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	BC060639|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18	AK147923|Arhgef18|102098|rho/rac guanine nucleotide exchange factor (GEF) 18
mm9_v1_chr11_-_86807216_86807263	0.120527	GGAAUGU	NM_001005341|Ypel2|77864|yippee-like 2 (Drosophila)
mm9_v1_chr2_-_32306938_32306989	0.120061	GGAAUGU	BC037109|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK132204|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK082756|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	AK049392|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_001164357|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	NM_146118|Slc25a25|227731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm9_v1_chr11_+_75492764_75492890	0.118934	GGAAUGU	AK154987|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028179|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK163291|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK152549|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK088519|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK052795|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK139089|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK036905|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028488|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	NM_133656|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161356|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161761|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC012216|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC031149|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	S72408|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AF239673|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm9_v1_chr19_+_4148636_4148721	0.116586	GGAAUGU	AK149639|Coro1b|23789|coronin, actin binding protein 1B	AF143956|Coro1b|23789|coronin, actin binding protein 1B	NM_011778|Coro1b|23789|coronin, actin binding protein 1B	BC029326|Coro1b|23789|coronin, actin binding protein 1B	BC131944|Coro1b|23789|coronin, actin binding protein 1B	BC132617|Coro1b|23789|coronin, actin binding protein 1B
mm9_v1_chr8_+_81033220_81033473	0.112324	GGAAUGU	NM_029736|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK160402|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK079901|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152752|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK152849|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK010834|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK165983|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AK040517|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116666|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	BC116717|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825926|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825927|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	AY825928|Slc10a7|76775|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm9_v1_chr12_+_103996146_103996313	0.110134	GGAAUGU	BC094323|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK088208|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK146308|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	NM_025666|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	BC094423|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK017542|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK149989|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK011968|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)	AK155611|Ubr7|66622|ubiquitin protein ligase E3 component n-recognin 7 (putative)
mm9_v1_chr6_+_64992584_64992660	0.109366	GGAAUGU	NM_007958|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	X69942|Smarcad1|13990|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm9_v1_chr17_+_43938789_43938843	0.107262	GGAAUGU	NM_207649|Rcan2|53901|regulator of calcineurin 2
mm9_v1_chr7_+_134732211_134732297	0.100115	GGAAUGU	NM_172281|Rnf40|233900|ring finger protein 40	AK089805|Rnf40|233900|ring finger protein 40	AK154982|Rnf40|233900|ring finger protein 40	AK171462|Rnf40|233900|ring finger protein 40	AK129184|Rnf40|233900|ring finger protein 40	BC038348|Rnf40|233900|ring finger protein 40
mm9_v1_chr11_-_114657186_114657223	0.0971295	GGAAUGU	BC060053|Btbd17|72014|BTB (POZ) domain containing 17	BC122876|Btbd17|72014|BTB (POZ) domain containing 17	AK032100|Btbd17|72014|BTB (POZ) domain containing 17	NM_028055|Btbd17|72014|BTB (POZ) domain containing 17	AK046050|Btbd17|72014|BTB (POZ) domain containing 17	AK005160|Btbd17|72014|BTB (POZ) domain containing 17	BC057599|Btbd17|72014|BTB (POZ) domain containing 17
mm9_v1_chr17_-_10512217_10512250	0.09526	GGAAUGU	AK132303|Qk|19317|quaking	NM_001159516|Qk|19317|quaking	NM_001159517|Qk|19317|quaking	NM_021881|Qk|19317|quaking	U44940|Qk|19317|quaking
mm9_v1_chr5_+_120120671_120120725	0.0913348	GGAAUGU	AK034758|Tbx3|21386|T-box 3	NM_011535|Tbx3|21386|T-box 3	NM_198052|Tbx3|21386|T-box 3	AK031708|Tbx3|21386|T-box 3
mm9_v1_chr5_-_144775583_144775788	0.0905191	GGAAUGU	AK213761|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	BC048077|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	NM_177682|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK090008|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK171671|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK172392|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK146704|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK150793|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152328|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152576|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK153160|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK164888|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
mm9_v1_chr4_-_132288428_132288460	0.0870466	GGAAUGU	AK029920|Xkr8|381560|X Kell blood group precursor related family member 8 homolog	AY534254|Xkr8|381560|X Kell blood group precursor related family member 8 homolog	NM_201368|Xkr8|381560|X Kell blood group precursor related family member 8 homolog
mm9_v1_chr1_+_137029275_137029304	0.084961	GGAAUGU	AK083305|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7	NM_177081|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7
mm9_v1_chr5_-_20457608_20457646	0.0846912	GGAAUGU	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chrX_+_71550301_71550377	0.0827896	GGAAUGU	NM_010273|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr4_+_128365981_128366038	0.0813001	GGAAUGU	NM_018774|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC057571|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr5_-_34125322_34125413	0.0730133	GGAAUGU	BC023862|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AF061026|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061690|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	NM_019694|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC046326|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC055865|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AB041582|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061115|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AK133849|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr17_-_63230665_63230665	0.0727824	GGAAUGU	BC040218|Efna5|13640|ephrin A5	NM_010109|Efna5|13640|ephrin A5	NM_207654|Efna5|13640|ephrin A5
mm9_v1_chr2_-_84490666_84490763	0.071547	GGAAUGU	NM_001085453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC046589|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr15_-_36212893_36212934	0.0707948	GGAAUGU	NM_013923|Rnf19a|30945|ring finger protein 19A
mm9_v1_chr9_+_21420612_21420824	0.0665473	GGAAUGU	BC079560|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174078|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174079|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_011417|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK147285|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK166837|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK160825|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK135308|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK142137|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC061214|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC060229|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC023830|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC032162|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC054056|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC014760|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK051530|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm9_v1_chr2_-_56976413_56976478	0.063818	GGAAUGU	NM_001139509|Nr4a2|18227|nuclear receptor subfamily 4, group A, member 2
mm9_v1_chr11_-_96838940_96839063	0.0586322	GGAAUGU	GU126673|Sp2|78912|Sp2 transcription factor	AK139302|Sp2|78912|Sp2 transcription factor	BC086457|Sp2|78912|Sp2 transcription factor	BC021759|Sp2|78912|Sp2 transcription factor	AK078246|Sp2|78912|Sp2 transcription factor	AK156580|Sp2|78912|Sp2 transcription factor	NM_001080964|Sp2|78912|Sp2 transcription factor	NM_030220|Sp2|78912|Sp2 transcription factor
mm9_v1_chr15_+_81633102_81633182	0.0547818	GGAAUGU	NM_153484|Tef|21685|thyrotroph embryonic factor	AK045575|Tef|21685|thyrotroph embryonic factor	AK053229|Tef|21685|thyrotroph embryonic factor	AK027965|Tef|21685|thyrotroph embryonic factor	AK141606|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr3_-_107563372_107563394	0.0517032	GGAAUGU	AK154261|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113529|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_001113530|Csf1|12977|colony stimulating factor 1 (macrophage)	NM_007778|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chr9_+_65907975_65908077	0.0511955	GGAAUGU	NM_011149|Ppib|19035|peptidylprolyl isomerase B	AK128977|Ppib|19035|peptidylprolyl isomerase B	AK002357|Ppib|19035|peptidylprolyl isomerase B	AK154073|Ppib|19035|peptidylprolyl isomerase B	M60456|Ppib|19035|peptidylprolyl isomerase B	BC013061|Ppib|19035|peptidylprolyl isomerase B
mm9_v1_chr10_+_93610663_93610767	0.0504639	GGAAUGU	AK146891|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	NM_011629|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	AK053907|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	BC090662|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	BC094580|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	AK149374|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1
mm9_v1_chr5_-_143668398_143668402	0.0504322	GGAAUGU	AK075973|Actb|11461|actin, beta	AK088691|Actb|11461|actin, beta	AK147787|Actb|11461|actin, beta	AK150662|Actb|11461|actin, beta	AK150675|Actb|11461|actin, beta	AK151010|Actb|11461|actin, beta	AK151145|Actb|11461|actin, beta	AK151166|Actb|11461|actin, beta	AK151226|Actb|11461|actin, beta	AK151277|Actb|11461|actin, beta	AK151350|Actb|11461|actin, beta	AK151386|Actb|11461|actin, beta	AK151468|Actb|11461|actin, beta	AK151898|Actb|11461|actin, beta	AK151956|Actb|11461|actin, beta	AK152052|Actb|11461|actin, beta	AK152433|Actb|11461|actin, beta	AK152470|Actb|11461|actin, beta	AK152844|Actb|11461|actin, beta	AK153461|Actb|11461|actin, beta	AK159834|Actb|11461|actin, beta	AK160029|Actb|11461|actin, beta	X03672|Actb|11461|actin, beta	AK152043|Actb|11461|actin, beta	AK150854|Actb|11461|actin, beta	AK150866|Actb|11461|actin, beta	AK151712|Actb|11461|actin, beta	AK152591|Actb|11461|actin, beta	AK159759|Actb|11461|actin, beta	NM_007393|Actb|11461|actin, beta
mm9_v1_chr11_+_97660946_97661134	0.0502663	GGAAUGU	X96702|Lasp1|16796|LIM and SH3 protein 1	AK148858|Lasp1|16796|LIM and SH3 protein 1	AK034404|Lasp1|16796|LIM and SH3 protein 1	AK049199|Lasp1|16796|LIM and SH3 protein 1	AK078445|Lasp1|16796|LIM and SH3 protein 1	AK168521|Lasp1|16796|LIM and SH3 protein 1	AK169381|Lasp1|16796|LIM and SH3 protein 1	NM_010688|Lasp1|16796|LIM and SH3 protein 1	AK154656|Lasp1|16796|LIM and SH3 protein 1	BC010840|Lasp1|16796|LIM and SH3 protein 1	X96973|Lasp1|16796|LIM and SH3 protein 1	CT010288|Lasp1|16796|LIM and SH3 protein 1
mm9_v1_chr6_-_116666759_116666930	0.0492455	GGAAUGU	BC116440|Tmem72|319776|transmembrane protein 72	BC116441|Tmem72|319776|transmembrane protein 72	AK085603|Tmem72|319776|transmembrane protein 72	NM_178768|Tmem72|319776|transmembrane protein 72	AK049938|Tmem72|319776|transmembrane protein 72	AK033856|Tmem72|319776|transmembrane protein 72	BC093486|Tmem72|319776|transmembrane protein 72	AK049048|Tmem72|319776|transmembrane protein 72	AK141578|Tmem72|319776|transmembrane protein 72
mm9_v1_chr2_+_109731003_109731053	0.0473178	GGAAUGU	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr6_-_24614975_24615061	0.0470626	GGAAUGU	AK143969|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	AK014104|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	BC058642|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_001167745|Wasl|73178|Wiskott-Aldrich syndrome-like (human)	NM_028459|Wasl|73178|Wiskott-Aldrich syndrome-like (human)
mm9_v1_chr18_-_3281709_3281744	0.0455302	GGAAUGU	AJ292222|Crem|12916|cAMP responsive element modulator	AJ311667|Crem|12916|cAMP responsive element modulator	S67786|Crem|12916|cAMP responsive element modulator	NM_001110854|Crem|12916|cAMP responsive element modulator	NM_001110855|Crem|12916|cAMP responsive element modulator
mm9_v1_chr3_-_82707880_82707898	0.0443947	GGAAUGU	AF255061|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	AK004953|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	NM_023624|Lrat|79235|lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)
mm9_v1_chr3_-_78949796_78949796	0.0442094	GGAAUGU	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr14_+_28051224_28051247	0.042799	GGAAUGU	AK004600|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	NM_027871|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036737|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036749|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr5_+_145844689_145844781	0.0410576	GGAAUGU	AB024984|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	NM_019767|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK003986|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK145663|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK076107|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	BC001988|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A	AK002475|Arpc1a|56443|actin related protein 2/3 complex, subunit 1A
mm9_v1_chr10_+_45297632_45297737	0.0408489	GGAAUGU	NM_172473|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	AK156958|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	AK042879|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	BC120695|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	BC120697|Hace1|209462|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
mm9_v1_chr6_-_86743518_86743591	0.0399709	GGAAUGU	AK132293|Anxa4|11746|annexin A4	AK170447|Anxa4|11746|annexin A4	AK150614|Anxa4|11746|annexin A4	AK151054|Anxa4|11746|annexin A4	BC055871|Anxa4|11746|annexin A4	AK150486|Anxa4|11746|annexin A4	AK168390|Anxa4|11746|annexin A4	U72941|Anxa4|11746|annexin A4	U95371|Anxa4|11746|annexin A4	AK151236|Anxa4|11746|annexin A4	AK168487|Anxa4|11746|annexin A4	AK167338|Anxa4|11746|annexin A4	NM_013471|Anxa4|11746|annexin A4
mm9_v1_chr18_+_57514370_57514505	0.0390559	GGAAUGU	NM_028447|Prrc1|73137|proline-rich coiled-coil 1	AK004443|Prrc1|73137|proline-rich coiled-coil 1	AK143537|Prrc1|73137|proline-rich coiled-coil 1	AK014139|Prrc1|73137|proline-rich coiled-coil 1	BC014817|Prrc1|73137|proline-rich coiled-coil 1
mm9_v1_chrX_+_34138197_34138219	0.0259766	GGAAUGU	AK162315|Pgrmc1|53328|progesterone receptor membrane component 1	AK169063|Pgrmc1|53328|progesterone receptor membrane component 1	AK153272|Pgrmc1|53328|progesterone receptor membrane component 1	AK159101|Pgrmc1|53328|progesterone receptor membrane component 1	AK166240|Pgrmc1|53328|progesterone receptor membrane component 1	AK167655|Pgrmc1|53328|progesterone receptor membrane component 1	AK168882|Pgrmc1|53328|progesterone receptor membrane component 1	AK168387|Pgrmc1|53328|progesterone receptor membrane component 1	AK159345|Pgrmc1|53328|progesterone receptor membrane component 1	AK159599|Pgrmc1|53328|progesterone receptor membrane component 1	BC006016|Pgrmc1|53328|progesterone receptor membrane component 1	NM_016783|Pgrmc1|53328|progesterone receptor membrane component 1
mm9_v1_chr1_-_121733647_121733647	0.0234958	GGAAUGU	NM_019933|Ptpn4|19258|protein tyrosine phosphatase, non-receptor type 4
mm9_v1_chr5_+_138526303_138526341	0.0216125	GGAAUGU	NM_029869|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	NM_133906|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK036807|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK031759|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020355|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK154831|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK020039|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1	AK054323|Zkscan1|74570|zinc finger with KRAB and SCAN domains 1
mm9_v1_chr5_+_67698177_67698238	0.0213422	GGAAUGU	AK082853|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	AK143277|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	NM_178651|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	AK032323|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	AY682914|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	AK035541|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	BC141008|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	AK028885|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9	AK038559|Slc30a9|109108|solute carrier family 30 (zinc transporter), member 9
mm9_v1_chr3_-_75360676_75360744	0.0208648	GGAAUGU	AF159368|Pdcd10|56426|programmed cell death 10	AK149182|Pdcd10|56426|programmed cell death 10	BC086778|Pdcd10|56426|programmed cell death 10	AK005594|Pdcd10|56426|programmed cell death 10	AK168857|Pdcd10|56426|programmed cell death 10	AK169689|Pdcd10|56426|programmed cell death 10	BC019650|Pdcd10|56426|programmed cell death 10	AK075926|Pdcd10|56426|programmed cell death 10	NM_019745|Pdcd10|56426|programmed cell death 10	AK160234|Pdcd10|56426|programmed cell death 10	AK137198|Pdcd10|56426|programmed cell death 10
mm9_v1_chr9_+_36651243_36651276	0.0197487	GGAAUGU	DQ141674|Fez1|235180|fasciculation and elongation protein zeta 1 (zygin I)	NM_183171|Fez1|235180|fasciculation and elongation protein zeta 1 (zygin I)
mm9_v1_chr19_-_12870612_12870615	0.0183944	GGAAUGU	NM_053009|Zfp91|109910|zinc finger protein 91	AK147560|Zfp91|109910|zinc finger protein 91
mm9_v1_chr11_+_79806552_79806633	0.0170315	GGAAUGU	AK141264|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	BC064461|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_001163018|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)	NM_199196|Suz12|52615|suppressor of zeste 12 homolog (Drosophila)
mm9_v1_chr15_-_27955602_27955621	0.0169307	GGAAUGU	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr14_+_27457610_27457865	0.0160338	GGAAUGU	AK013892|Arf4|11843|ADP-ribosylation factor 4	AK002302|Arf4|11843|ADP-ribosylation factor 4	AK168793|Arf4|11843|ADP-ribosylation factor 4	NM_007479|Arf4|11843|ADP-ribosylation factor 4	AK081686|Arf4|11843|ADP-ribosylation factor 4	AK153011|Arf4|11843|ADP-ribosylation factor 4	BC115650|Arf4|11843|ADP-ribosylation factor 4	BC115651|Arf4|11843|ADP-ribosylation factor 4	D87901|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr13_-_53472719_53472729	0.0128347	GGAAUGU	AK084445|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	X95641|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK079578|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	BC046323|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	NM_009269|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1
mm9_v1_chr3_+_55265654_55265683	0.00918401	GGAAUGU	NM_001111051|Dclk1|13175|doublecortin-like kinase 1	NM_001111052|Dclk1|13175|doublecortin-like kinase 1	NM_001195539|Dclk1|13175|doublecortin-like kinase 1	NM_001195540|Dclk1|13175|doublecortin-like kinase 1
mm9_v1_chr19_+_46697882_46697901	0.00507583	GGAAUGU	AK078491|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK142695|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	NM_001177813|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK052400|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed
mm9_v1_chr7_+_98239230_98239295	0.00355307	GGAAUGU	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr19_+_25311691_25311752	0.00239966	GGAAUGU	AK041011|Kank1|107351|KN motif and ankyrin repeat domains 1	NM_181404|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr17_-_84587278_84587289	0.00109617	GGAAUGU	AK159513|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK160955|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK170763|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	NM_001001806|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
