mm9_v1_chr1_-_12980994_12981257	0.703896	GGAGUGU	BC117943|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	BC117944|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK048882|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK041736|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	NM_172841|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1	AK028758|Slco5a1|240726|solute carrier organic anion transporter family, member 5A1
mm9_v1_chr6_+_15135505_15135508	0.635179	GGAGUGU	BC062926|Foxp2|114142|forkhead box P2	NM_212435|Foxp2|114142|forkhead box P2	BC058960|Foxp2|114142|forkhead box P2
mm9_v1_chr1_-_176851949_176851953	0.578558	GGAGUGU	AB011030|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	NM_011825|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)	AK142008|Grem2|23893|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm9_v1_chr10_+_58786043_58786162	0.45991	GGAGUGU	NM_011030|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK030574|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK161212|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK169726|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK045008|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK160798|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK165468|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	BC009654|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	AK149127|P4ha1|18451|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
mm9_v1_chr4_-_45421590_45421646	0.403924	GGAGUGU	AK150362|Mcart1|230125|mitochondrial carrier triple repeat 1	AK151688|Mcart1|230125|mitochondrial carrier triple repeat 1	AK152171|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156168|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156342|Mcart1|230125|mitochondrial carrier triple repeat 1	AK146788|Mcart1|230125|mitochondrial carrier triple repeat 1	AK020275|Mcart1|230125|mitochondrial carrier triple repeat 1	AK164726|Mcart1|230125|mitochondrial carrier triple repeat 1	AK172225|Mcart1|230125|mitochondrial carrier triple repeat 1	AK051139|Mcart1|230125|mitochondrial carrier triple repeat 1	AK165253|Mcart1|230125|mitochondrial carrier triple repeat 1	NM_001009949|Mcart1|230125|mitochondrial carrier triple repeat 1
mm9_v1_chr2_-_153270059_153270214	0.312599	GGAGUGU	BC079552|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK157863|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	AK139459|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001001986|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chrX_-_53851046_53851096	0.300405	GGAGUGU	EU069461|Mmgt1|236792|membrane magnesium transporter 1	AK049689|Mmgt1|236792|membrane magnesium transporter 1	AK036253|Mmgt1|236792|membrane magnesium transporter 1	NM_146234|Mmgt1|236792|membrane magnesium transporter 1
mm9_v1_chr3_-_106350628_106350700	0.297443	GGAGUGU	BC021753|Cept1|99712|choline/ethanolaminephosphotransferase 1	BC023783|Cept1|99712|choline/ethanolaminephosphotransferase 1	AK037116|Cept1|99712|choline/ethanolaminephosphotransferase 1	NM_133869|Cept1|99712|choline/ethanolaminephosphotransferase 1
mm9_v1_chr12_-_105990160_105990320	0.270325	GGAGUGU	BC019805|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	AF430845|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)	NM_148948|Dicer1|192119|Dicer1, Dcr-1 homolog (Drosophila)
mm9_v1_chr11_-_97141747_97141925	0.255261	GGAGUGU	BC009653|Npepps|19155|aminopeptidase puromycin sensitive	AK138772|Npepps|19155|aminopeptidase puromycin sensitive	U35646|Npepps|19155|aminopeptidase puromycin sensitive	BC086798|Npepps|19155|aminopeptidase puromycin sensitive	BC098212|Npepps|19155|aminopeptidase puromycin sensitive	NM_008942|Npepps|19155|aminopeptidase puromycin sensitive
mm9_v1_chr5_-_92512683_92512782	0.251302	GGAGUGU	AF145285|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	U65313|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151965|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK152792|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK172256|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC048176|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK145697|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK076117|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK167186|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080795|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_011816|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr1_-_180267913_180267920	0.234977	GGAGUGU	AK165844|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	NM_016805|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK089058|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145682|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK159614|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK167200|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK145499|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U	AK162264|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr12_-_112615921_112615933	0.187363	GGAGUGU	NM_183016|Cdc42bpb|217866|CDC42 binding protein kinase beta
mm9_v1_chr5_-_46248719_46248778	0.173827	GGAGUGU	BC066151|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK041987|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043498|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK154398|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK155421|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK083689|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK043845|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	BC138563|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_001163073|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_178142|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr12_+_107022903_107023027	0.147664	GGAGUGU	NM_011112|Papola|18789|poly (A) polymerase alpha	AK028940|Papola|18789|poly (A) polymerase alpha	AK090096|Papola|18789|poly (A) polymerase alpha	AK132704|Papola|18789|poly (A) polymerase alpha	AK134552|Papola|18789|poly (A) polymerase alpha	BC060128|Papola|18789|poly (A) polymerase alpha	U58134|Papola|18789|poly (A) polymerase alpha	U52197|Papola|18789|poly (A) polymerase alpha
mm9_v1_chr4_-_134828503_134828682	0.124387	GGAGUGU	CT010279|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172516|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC052890|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	BC046384|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AF102578|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	NM_013885|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049191|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK150993|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK155826|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166794|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169376|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK169834|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172660|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK049255|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK031211|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK054024|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK152273|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK160856|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK161034|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK172026|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK153432|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK159402|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK166244|Clic4|29876|chloride intracellular channel 4 (mitochondrial)	AK171243|Clic4|29876|chloride intracellular channel 4 (mitochondrial)
mm9_v1_chr17_-_28623006_28623098	0.111707	GGAGUGU	U36220|Fkbp5|14229|FK506 binding protein 5	BC015260|Fkbp5|14229|FK506 binding protein 5	AK169795|Fkbp5|14229|FK506 binding protein 5	NM_010220|Fkbp5|14229|FK506 binding protein 5	U16959|Fkbp5|14229|FK506 binding protein 5
mm9_v1_chr12_+_54349663_54349663	0.0937462	GGAGUGU	AF173871|Npas3|27386|neuronal PAS domain protein 3	BC120885|Npas3|27386|neuronal PAS domain protein 3	BC148199|Npas3|27386|neuronal PAS domain protein 3	NM_013780|Npas3|27386|neuronal PAS domain protein 3
mm9_v1_chr7_-_26504053_26504077	0.0728805	GGAGUGU	AK155466|Ccdc97|52132|coiled-coil domain containing 97	AK045509|Ccdc97|52132|coiled-coil domain containing 97	AK088221|Ccdc97|52132|coiled-coil domain containing 97	AK004762|Ccdc97|52132|coiled-coil domain containing 97	NM_028771|Ccdc97|52132|coiled-coil domain containing 97
mm9_v1_chr7_+_52690164_52690415	0.068868	GGAGUGU	NM_030678|Gys1|14936|glycogen synthase 1, muscle	AK169344|Gys1|14936|glycogen synthase 1, muscle	AK170404|Gys1|14936|glycogen synthase 1, muscle	AK171426|Gys1|14936|glycogen synthase 1, muscle	AK171148|Gys1|14936|glycogen synthase 1, muscle	AK170585|Gys1|14936|glycogen synthase 1, muscle	X94616|Gys1|14936|glycogen synthase 1, muscle	BC131687|Gys1|14936|glycogen synthase 1, muscle	BC131688|Gys1|14936|glycogen synthase 1, muscle	BC152550|Gys1|14936|glycogen synthase 1, muscle	U53218|Gys1|14936|glycogen synthase 1, muscle	BC019389|Gys1|14936|glycogen synthase 1, muscle
mm9_v1_chr7_-_17641980_17642027	0.0632766	GGAGUGU	BC120587|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	AF060194|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	NM_016868|Hif3a|53417|hypoxia inducible factor 3, alpha subunit
mm9_v1_chr1_+_141318927_141318961	0.0631382	GGAGUGU	NM_172643|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog	AK036544|Zbtb41|226470|zinc finger and BTB domain containing 41 homolog
mm9_v1_chr6_+_14851348_14851478	0.0565501	GGAGUGU	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr7_+_17366682_17366755	0.0492913	GGAGUGU	AK148346|Slc1a5|20514|solute carrier family 1 (neutral amino acid transporter), member 5	NM_009201|Slc1a5|20514|solute carrier family 1 (neutral amino acid transporter), member 5	AK157838|Slc1a5|20514|solute carrier family 1 (neutral amino acid transporter), member 5	L42115|Slc1a5|20514|solute carrier family 1 (neutral amino acid transporter), member 5	D85044|Slc1a5|20514|solute carrier family 1 (neutral amino acid transporter), member 5
mm9_v1_chr5_-_46247789_46247790	0.0471217	GGAGUGU	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr11_-_40568710_40568789	0.0447589	GGAGUGU	AK167486|Ccng1|12450|cyclin G1	AK159429|Ccng1|12450|cyclin G1	AK153392|Ccng1|12450|cyclin G1	AK167052|Ccng1|12450|cyclin G1	AK159831|Ccng1|12450|cyclin G1	L49507|Ccng1|12450|cyclin G1	Z37110|Ccng1|12450|cyclin G1	AK160411|Ccng1|12450|cyclin G1	AK128957|Ccng1|12450|cyclin G1	AK147026|Ccng1|12450|cyclin G1	AK170397|Ccng1|12450|cyclin G1	AK143114|Ccng1|12450|cyclin G1	NM_009831|Ccng1|12450|cyclin G1
mm9_v1_chr4_+_32504409_32504501	0.0417658	GGAGUGU	NM_001109661|Bach2|12014|BTB and CNC homology 2	BC131642|Bach2|12014|BTB and CNC homology 2
mm9_v1_chr9_-_50467884_50467918	0.038102	GGAGUGU	AK032124|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	NM_145614|Dlat|235339|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm9_v1_chr7_-_17647732_17647775	0.028613	GGAGUGU	AF416641|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	AB289606|Hif3a|53417|hypoxia inducible factor 3, alpha subunit	NM_001162950|Hif3a|53417|hypoxia inducible factor 3, alpha subunit
mm9_v1_chr17_-_17761403_17761607	0.0255901	GGAGUGU	BC120925|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC120926|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK029094|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK036967|Lnpep|240028|leucyl/cystinyl aminopeptidase	NM_172827|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC066791|Lnpep|240028|leucyl/cystinyl aminopeptidase
mm9_v1_chr7_-_134592467_134592671	0.0240112	GGAGUGU	AK051667|Zfp689|71131|zinc finger protein 689	AK016830|Zfp689|71131|zinc finger protein 689	AK028417|Zfp689|71131|zinc finger protein 689	BC052084|Zfp689|71131|zinc finger protein 689	NM_175163|Zfp689|71131|zinc finger protein 689
mm9_v1_chr16_-_31201251_31201348	0.0171281	GGAGUGU	AK032916|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK129041|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK044812|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	AK020591|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	NM_030138|Acap2|78618|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm9_v1_chrX_+_72627673_72627773	0.0135763	GGAGUGU	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr11_+_4086804_4086893	0.0123872	GGAGUGU	AK140872|Tbc1d10a|103724|TBC1 domain family, member 10a	AK220243|Tbc1d10a|103724|TBC1 domain family, member 10a	BC018300|Tbc1d10a|103724|TBC1 domain family, member 10a	NM_134023|Tbc1d10a|103724|TBC1 domain family, member 10a	AK153677|Tbc1d10a|103724|TBC1 domain family, member 10a	BC037230|Tbc1d10a|103724|TBC1 domain family, member 10a
mm9_v1_chr7_+_98239230_98239295	0.0108726	GGAGUGU	NM_011807|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr7_-_133942767_133942800	0.000768119	GGAGUGU	NM_007438|Aldoa|11674|aldolase A, fructose-bisphosphate
