mm9_v1_chr12_+_75098739_75098790	6.59555	GLI1..3.p2	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chr11_+_120582777_120582942	5.87216	GLI1..3.p2	AK150203|Rac3|170758|RAS-related C3 botulinum substrate 3	NM_133223|Rac3|170758|RAS-related C3 botulinum substrate 3	AK089930|Rac3|170758|RAS-related C3 botulinum substrate 3	BC117028|Rac3|170758|RAS-related C3 botulinum substrate 3	BC119041|Rac3|170758|RAS-related C3 botulinum substrate 3	AB040819|Rac3|170758|RAS-related C3 botulinum substrate 3	AY974601|Rac3|170758|RAS-related C3 botulinum substrate 3
mm9_v1_chr1_-_127808723_127808763	5.84855	GLI1..3.p2	BC058599|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr2_+_157385835_157385932	5.7463	GLI1..3.p2	AK003004|Nnat|18111|neuronatin	AK077465|Nnat|18111|neuronatin	AK160626|Nnat|18111|neuronatin	NM_010923|Nnat|18111|neuronatin	NM_180960|Nnat|18111|neuronatin	X83569|Nnat|18111|neuronatin	X83570|Nnat|18111|neuronatin	BC036984|Nnat|18111|neuronatin	AB004048|Nnat|18111|neuronatin	X83568|Nnat|18111|neuronatin
mm9_v1_chr2_-_29108440_29108468	5.55638	GLI1..3.p2	AK154396|6530402F18Rik|76220|RIKEN cDNA 6530402F18 gene
mm9_v1_chr3_+_45182311_45182350	5.55525	GLI1..3.p2	BC037259|Pcdh10|18526|protocadherin 10	NM_001098170|Pcdh10|18526|protocadherin 10	NM_001098171|Pcdh10|18526|protocadherin 10	NM_001098172|Pcdh10|18526|protocadherin 10	NM_011043|Pcdh10|18526|protocadherin 10	AK081621|Pcdh10|18526|protocadherin 10	AK081977|Pcdh10|18526|protocadherin 10	BC026712|Pcdh10|18526|protocadherin 10	AK122503|Pcdh10|18526|protocadherin 10
mm9_v1_chr13_-_100286446_100286519	4.33033	GLI1..3.p2	BC019183|Mtap1b|17755|microtubule-associated protein 1B	BC046287|Mtap1b|17755|microtubule-associated protein 1B	BC052016|Mtap1b|17755|microtubule-associated protein 1B	BC078457|Mtap1b|17755|microtubule-associated protein 1B	BC138033|Mtap1b|17755|microtubule-associated protein 1B	BC138034|Mtap1b|17755|microtubule-associated protein 1B	BC037105|Mtap1b|17755|microtubule-associated protein 1B	X51396|Mtap1b|17755|microtubule-associated protein 1B	AK158307|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr7_+_152082435_152082493	3.82379	GLI1..3.p2	AK017829|Fgf15|14170|fibroblast growth factor 15	AF007268|Fgf15|14170|fibroblast growth factor 15	NM_008003|Fgf15|14170|fibroblast growth factor 15	BC021328|Fgf15|14170|fibroblast growth factor 15
mm9_v1_chr9_-_56265833_56265857	3.79232	GLI1..3.p2	AK035440|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	AK048912|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene	NM_172924|C230081A13Rik|244895|RIKEN cDNA C230081A13 gene
mm9_v1_chr13_+_55050729_55050861	3.64744	GLI1..3.p2	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr11_-_41814008_41814185	3.53627	GLI1..3.p2	M86572|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	BC031762|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	M62374|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_008073|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK034338|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr13_+_54676356_54676474	3.39032	GLI1..3.p2	NM_019968|Arl10|56795|ADP-ribosylation factor-like 10	AK154684|Arl10|56795|ADP-ribosylation factor-like 10	AF205936|Arl10|56795|ADP-ribosylation factor-like 10	BC115498|Arl10|56795|ADP-ribosylation factor-like 10
mm9_v1_chr1_+_50984361_50984403	3.36769	GLI1..3.p2	AB041565|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK029307|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	NM_019790|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK076254|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK135038|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	BC034850|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AB017270|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2
mm9_v1_chr6_-_32538191_32538191	3.27574	GLI1..3.p2	AB073228|Plxna4|243743|plexin A4	NM_175750|Plxna4|243743|plexin A4
mm9_v1_chr4_+_144482979_144483095	3.06835	GLI1..3.p2	AK032958|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	X95281|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	AK151419|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_011303|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	BC013540|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr10_+_68996455_68996596	3.00762	GLI1..3.p2	NM_146005|Ank3|11735|ankyrin 3, epithelial	NM_170688|Ank3|11735|ankyrin 3, epithelial	NM_170689|Ank3|11735|ankyrin 3, epithelial	NM_170690|Ank3|11735|ankyrin 3, epithelial	NM_170728|Ank3|11735|ankyrin 3, epithelial	NM_170729|Ank3|11735|ankyrin 3, epithelial	NM_170730|Ank3|11735|ankyrin 3, epithelial	AK162547|Ank3|11735|ankyrin 3, epithelial	AK042330|Ank3|11735|ankyrin 3, epithelial	BC021657|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chrX_-_70905062_70905211	2.9655	GLI1..3.p2	AK134665|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AF181984|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	NM_012040|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr3_-_127202153_127202192	2.84521	GLI1..3.p2	AK043034|Ank2|109676|ankyrin 2, brain
mm9_v1_chr6_+_124946723_124946772	2.8347	GLI1..3.p2	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr17_+_37182910_37182979	2.70277	GLI1..3.p2	BC054735|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	NM_019439|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AK156397|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AK159584|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chrX_+_130939318_130939458	2.69159	GLI1..3.p2	AK038488|Drp2|13497|dystrophin related protein 2	NM_010078|Drp2|13497|dystrophin related protein 2	AK081426|Drp2|13497|dystrophin related protein 2	AK034383|Drp2|13497|dystrophin related protein 2	BC125345|Drp2|13497|dystrophin related protein 2	BC125347|Drp2|13497|dystrophin related protein 2
mm9_v1_chr14_+_67852128_67852128	2.65652	GLI1..3.p2	AK053013|Ebf2|13592|early B-cell factor 2	NM_010095|Ebf2|13592|early B-cell factor 2
mm9_v1_chr13_-_100286521_100286556	2.64642	GLI1..3.p2	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr2_+_106533281_106533425	2.62638	GLI1..3.p2	AK165186|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr10_-_61573705_61573762	2.44264	GLI1..3.p2	BC024943|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK008338|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK035688|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	NM_027251|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene
mm9_v1_chr17_-_24826873_24826911	2.4356	GLI1..3.p2	AF117207|Syngr3|20974|synaptogyrin 3	AK081164|Syngr3|20974|synaptogyrin 3	NM_011522|Syngr3|20974|synaptogyrin 3
mm9_v1_chr15_-_64143929_64144240	2.3331	GLI1..3.p2	AK122477|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	AK132979|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	BC048818|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1	AK147689|Asap1|13196|ArfGAP with SH# domain, ankyrin repeat and PH domain1
mm9_v1_chr3_-_127201974_127202032	2.32841	GLI1..3.p2	AK044634|Ank2|109676|ankyrin 2, brain
mm9_v1_chr1_+_131170034_131170050	2.32742	GLI1..3.p2	AK051714|Thsd7b|210417|thrombospondin, type I, domain containing 7B	BC063250|Thsd7b|210417|thrombospondin, type I, domain containing 7B
mm9_v1_chrX_+_98494487_98494551	2.31643	GLI1..3.p2	NM_172932|Nlgn3|245537|neuroligin 3	AK039018|Nlgn3|245537|neuroligin 3
mm9_v1_chr8_+_56040211_56040342	2.3065	GLI1..3.p2	BC043130|Gpm6a|234267|glycoprotein m6a	AK147245|Gpm6a|234267|glycoprotein m6a	AK147280|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr3_-_26230791_26230830	2.28421	GLI1..3.p2	AK083116|Nlgn1|192167|neuroligin 1	AK122433|Nlgn1|192167|neuroligin 1	NM_138666|Nlgn1|192167|neuroligin 1
mm9_v1_chr10_+_105907394_105907408	2.18185	GLI1..3.p2	BC065133|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	EU568870|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	NM_177373|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK030621|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	AK220491|Ppfia2|327814|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm9_v1_chr12_-_71212591_71212711	2.17191	GLI1..3.p2	AK141891|Nin|18080|ninein	AK134860|Nin|18080|ninein
mm9_v1_chr7_+_89319681_89319705	2.15569	GLI1..3.p2	BC027096|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr9_+_109834266_109834307	2.14088	GLI1..3.p2	NM_008633|Mtap4|17758|microtubule-associated protein 4	AK046825|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr2_+_157386313_157386316	2.12568	GLI1..3.p2	AK046462|Nnat|18111|neuronatin
mm9_v1_chr6_+_110595574_110595583	2.10671	GLI1..3.p2	AK053447|Grm7|108073|glutamate receptor, metabotropic 7	AK047160|Grm7|108073|glutamate receptor, metabotropic 7	AK047733|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr10_+_126515962_126515962	2.06792	GLI1..3.p2	AK147446|Agap2|216439|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	NM_001033263|Agap2|216439|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
mm9_v1_chr5_+_99283433_99283479	2.03893	GLI1..3.p2	AK035299|Bmp3|110075|bone morphogenetic protein 3	AK040389|Bmp3|110075|bone morphogenetic protein 3	NM_173404|Bmp3|110075|bone morphogenetic protein 3	AK035393|Bmp3|110075|bone morphogenetic protein 3	AK037225|Bmp3|110075|bone morphogenetic protein 3
mm9_v1_chr5_-_133017901_133018025	1.97837	GLI1..3.p2	AK085946|Auts2|319974|autism susceptibility candidate 2
mm9_v1_chr8_+_56040193_56040201	1.93273	GLI1..3.p2	AK081877|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr4_+_42930076_42930171	1.92626	GLI1..3.p2	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr6_-_88824977_88825061	1.86667	GLI1..3.p2	AK038943|Podxl2|319655|podocalyxin-like 2
mm9_v1_chr4_-_68615382_68615433	1.86174	GLI1..3.p2	BC048789|Dbc1|56710|deleted in bladder cancer 1 (human)	BC079630|Dbc1|56710|deleted in bladder cancer 1 (human)	AB060589|Dbc1|56710|deleted in bladder cancer 1 (human)	NM_019967|Dbc1|56710|deleted in bladder cancer 1 (human)
mm9_v1_chr16_-_30550622_30550663	1.85642	GLI1..3.p2	AK031524|Tmem44|224090|transmembrane protein 44	AK045675|Tmem44|224090|transmembrane protein 44	AK048655|Tmem44|224090|transmembrane protein 44	NM_172614|Tmem44|224090|transmembrane protein 44
mm9_v1_chr11_-_41813792_41813857	1.77362	GLI1..3.p2	AK047085|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK136889|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	NM_177408|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233775|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233776|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233777|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233778|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233779|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233780|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233781|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233782|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233783|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233784|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233785|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233786|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233787|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233788|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233789|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233790|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233791|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233792|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233793|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233794|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233795|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233796|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233797|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233798|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233799|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233800|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233801|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AF233802|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK141129|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	AK049857|Gabrg2|14406|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm9_v1_chr12_+_45429857_45429887	1.74307	GLI1..3.p2	AK043838|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_001146031|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	NM_176930|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr10_+_86241749_86241796	1.69646	GLI1..3.p2	NM_175331|Nt5dc3|103466|5'-nucleotidase domain containing 3	AK147488|Nt5dc3|103466|5'-nucleotidase domain containing 3	AK172248|Nt5dc3|103466|5'-nucleotidase domain containing 3
mm9_v1_chr2_-_132211105_132211182	1.67881	GLI1..3.p2	AK041586|Prokr2|246313|prokineticin receptor 2	BC043116|Prokr2|246313|prokineticin receptor 2	BC057557|Prokr2|246313|prokineticin receptor 2	AK030458|Prokr2|246313|prokineticin receptor 2	AK082195|Prokr2|246313|prokineticin receptor 2	NM_144944|Prokr2|246313|prokineticin receptor 2
mm9_v1_chr8_-_67171805_67171871	1.67167	GLI1..3.p2	AK047891|Cpe|12876|carboxypeptidase E	BC010197|Cpe|12876|carboxypeptidase E	NM_013494|Cpe|12876|carboxypeptidase E	AK160097|Cpe|12876|carboxypeptidase E
mm9_v1_chr5_+_115751128_115751148	1.63757	GLI1..3.p2	
mm9_v1_chr4_-_147504787_147504806	1.61143	GLI1..3.p2	BC060239|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene	AK086198|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene	NM_027426|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene
mm9_v1_chr7_-_25372613_25372684	1.60444	GLI1..3.p2	AK138180|Zfp575|101544|zinc finger protein 575	BC150867|Zfp575|101544|zinc finger protein 575	BC150873|Zfp575|101544|zinc finger protein 575	AK159025|Zfp575|101544|zinc finger protein 575	NM_001033205|Zfp575|101544|zinc finger protein 575
mm9_v1_chr4_+_144482722_144482729	1.58046	GLI1..3.p2	BC008980|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_001172424|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chrX_-_70905384_70905478	1.56687	GLI1..3.p2	BC055891|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	BC051996|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AK158755|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr5_-_3803095_3803144	1.56677	GLI1..3.p2	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr2_+_156246644_156246847	1.53584	GLI1..3.p2	AK147611|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK147272|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK165479|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_001003815|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	NM_013510|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK044744|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AK154704|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	AF061283|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1	BC034751|Epb4.1l1|13821|erythrocyte protein band 4.1-like 1
mm9_v1_chr2_+_157387284_157387395	1.5351	GLI1..3.p2	AY644389|Nnat|18111|neuronatin
mm9_v1_chr9_+_109834324_109834425	1.52548	GLI1..3.p2	AK166672|Mtap4|17758|microtubule-associated protein 4	AK034206|Mtap4|17758|microtubule-associated protein 4	BC044654|Mtap4|17758|microtubule-associated protein 4	AK163450|Mtap4|17758|microtubule-associated protein 4	BC055332|Mtap4|17758|microtubule-associated protein 4	BC050893|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr17_-_24826812_24826871	1.50669	GLI1..3.p2	AK048753|Syngr3|20974|synaptogyrin 3	AK082167|Syngr3|20974|synaptogyrin 3	BC025022|Syngr3|20974|synaptogyrin 3	AK080129|Syngr3|20974|synaptogyrin 3	AK087538|Syngr3|20974|synaptogyrin 3
mm9_v1_chr11_+_109287259_109287319	1.49673	GLI1..3.p2	NM_025275|Amz2|13929|archaelysin family metallopeptidase 2	AK077195|Amz2|13929|archaelysin family metallopeptidase 2	AK143908|Amz2|13929|archaelysin family metallopeptidase 2	AK004062|Amz2|13929|archaelysin family metallopeptidase 2	AK075748|Amz2|13929|archaelysin family metallopeptidase 2
mm9_v1_chr12_+_45429894_45429900	1.4918	GLI1..3.p2	AK048567|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr7_+_89319717_89319836	1.48704	GLI1..3.p2	NM_017400|Sh3gl3|20408|SH3-domain GRB2-like 3	AK012114|Sh3gl3|20408|SH3-domain GRB2-like 3	BC100453|Sh3gl3|20408|SH3-domain GRB2-like 3
mm9_v1_chr4_+_85699818_85699939	1.46912	GLI1..3.p2	NM_029967|Adamtsl1|77739|ADAMTS-like 1	AK020115|Adamtsl1|77739|ADAMTS-like 1	BC062814|Adamtsl1|77739|ADAMTS-like 1	AK045085|Adamtsl1|77739|ADAMTS-like 1	BC139339|Adamtsl1|77739|ADAMTS-like 1	BC139367|Adamtsl1|77739|ADAMTS-like 1
mm9_v1_chr14_-_37911383_37911496	1.4679	GLI1..3.p2	AF426393|Cdhr1|170677|cadherin-related family member 1	BC042454|Cdhr1|170677|cadherin-related family member 1	AK143151|Cdhr1|170677|cadherin-related family member 1	BC058270|Cdhr1|170677|cadherin-related family member 1	NM_130878|Cdhr1|170677|cadherin-related family member 1
mm9_v1_chr12_+_45429966_45429998	1.44858	GLI1..3.p2	AJ543321|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chrX_-_69901382_69901584	1.42835	GLI1..3.p2	BC119317|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	BC120686|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	M86568|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK134760|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	AK039144|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	NM_008067|Gabra3|14396|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm9_v1_chr14_+_105657949_105657967	1.42752	GLI1..3.p2	AK132235|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr19_+_4711207_4711210	1.41626	GLI1..3.p2	AK147671|Spnb3|20743|spectrin beta 3
mm9_v1_chr17_-_56279684_56279770	1.40758	GLI1..3.p2	AK139358|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	AK143229|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	NM_001130456|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm9_v1_chr15_+_84493635_84493673	1.39584	GLI1..3.p2	AK046057|Prr5|109270|proline rich 5 (renal)
mm9_v1_chr9_+_122481617_122481627	1.38583	GLI1..3.p2	AK048438|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK049978|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK079255|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK084074|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK135014|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene
mm9_v1_chr3_+_7503409_7503519	1.35922	GLI1..3.p2	NM_173181|Fam164a|67306|family with sequence similarity 164, member A	BC087731|Fam164a|67306|family with sequence similarity 164, member A	AK083941|Fam164a|67306|family with sequence similarity 164, member A	AK170609|Fam164a|67306|family with sequence similarity 164, member A	AK085187|Fam164a|67306|family with sequence similarity 164, member A	AK014202|Fam164a|67306|family with sequence similarity 164, member A	BC044809|Fam164a|67306|family with sequence similarity 164, member A
mm9_v1_chr11_-_33743416_33743626	1.35549	GLI1..3.p2	AY647242|Kcnip1|70357|Kv channel-interacting protein 1	AY171234|Kcnip1|70357|Kv channel-interacting protein 1	BC034241|Kcnip1|70357|Kv channel-interacting protein 1	DQ148493|Kcnip1|70357|Kv channel-interacting protein 1	AK013657|Kcnip1|70357|Kv channel-interacting protein 1	AK014313|Kcnip1|70357|Kv channel-interacting protein 1	AK046398|Kcnip1|70357|Kv channel-interacting protein 1	AK045948|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190885|Kcnip1|70357|Kv channel-interacting protein 1	NM_027398|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr2_-_29108499_29108525	1.35153	GLI1..3.p2	AK079298|6530402F18Rik|76220|RIKEN cDNA 6530402F18 gene	BC066084|6530402F18Rik|76220|RIKEN cDNA 6530402F18 gene	AK018312|6530402F18Rik|76220|RIKEN cDNA 6530402F18 gene
mm9_v1_chr6_+_30688050_30688066	1.35009	GLI1..3.p2	AK031718|Mest|17294|mesoderm specific transcript	AK032881|Mest|17294|mesoderm specific transcript	AK034949|Mest|17294|mesoderm specific transcript	AK146457|Mest|17294|mesoderm specific transcript	AK168714|Mest|17294|mesoderm specific transcript	AK168732|Mest|17294|mesoderm specific transcript	AK168743|Mest|17294|mesoderm specific transcript	AK168995|Mest|17294|mesoderm specific transcript	AK169095|Mest|17294|mesoderm specific transcript	AK169266|Mest|17294|mesoderm specific transcript	D16262|Mest|17294|mesoderm specific transcript	NM_008590|Mest|17294|mesoderm specific transcript	BC006639|Mest|17294|mesoderm specific transcript
mm9_v1_chr4_-_68615283_68615343	1.3475	GLI1..3.p2	AK045420|Dbc1|56710|deleted in bladder cancer 1 (human)	AK028321|Dbc1|56710|deleted in bladder cancer 1 (human)
mm9_v1_chr2_+_49474775_49474833	1.34018	GLI1..3.p2	BC067051|Kif5c|16574|kinesin family member 5C	NM_008449|Kif5c|16574|kinesin family member 5C
mm9_v1_chr1_-_95532278_95532320	1.32949	GLI1..3.p2	BC071218|Stk25|59041|serine/threonine kinase 25 (yeast)	NM_021537|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr12_+_45429913_45429941	1.31309	GLI1..3.p2	AK087693|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule	AK122252|Nrcam|319504|neuron-glia-CAM-related cell adhesion molecule
mm9_v1_chr1_+_154802091_154802137	1.29726	GLI1..3.p2	AK084041|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	AK083532|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr2_-_60800904_60800955	1.29587	GLI1..3.p2	AK184927|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	AK135280|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr2_-_168567436_168567596	1.28643	GLI1..3.p2	AF152243|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr1_-_108610861_108610866	1.28275	GLI1..3.p2	AK049473|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_009741|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_177410|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr1_+_154802144_154802177	1.27131	GLI1..3.p2	AK129155|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chrX_+_117403867_117404011	1.25974	GLI1..3.p2	AJ564976|Pcdh11x|245578|protocadherin 11 X-linked	AK031276|Pcdh11x|245578|protocadherin 11 X-linked	AK032315|Pcdh11x|245578|protocadherin 11 X-linked	AK039071|Pcdh11x|245578|protocadherin 11 X-linked	NM_001081385|Pcdh11x|245578|protocadherin 11 X-linked	BC126930|Pcdh11x|245578|protocadherin 11 X-linked
mm9_v1_chr19_+_18706474_18706505	1.25914	GLI1..3.p2	AK050579|BC016495|225994|cDNA sequence BC016495	BC016495|BC016495|225994|cDNA sequence BC016495	NM_145497|BC016495|225994|cDNA sequence BC016495
mm9_v1_chrX_-_71126088_71126172	1.25748	GLI1..3.p2	BC056988|L1cam|16728|L1 cell adhesion molecule	AK139407|L1cam|16728|L1 cell adhesion molecule	NM_008478|L1cam|16728|L1 cell adhesion molecule
mm9_v1_chr6_+_41555460_41555790	1.2483	GLI1..3.p2	NM_001146351|Ephb6|13848|Eph receptor B6	NM_007680|Ephb6|13848|Eph receptor B6	AK087423|Ephb6|13848|Eph receptor B6	AK076442|Ephb6|13848|Eph receptor B6	L77867|Ephb6|13848|Eph receptor B6
mm9_v1_chr19_-_18706239_18706339	1.24683	GLI1..3.p2	AK008123|Ostf1|20409|osteoclast stimulating factor 1	AK008467|Ostf1|20409|osteoclast stimulating factor 1	U58888|Ostf1|20409|osteoclast stimulating factor 1	AK145949|Ostf1|20409|osteoclast stimulating factor 1	AK005525|Ostf1|20409|osteoclast stimulating factor 1	AK150145|Ostf1|20409|osteoclast stimulating factor 1	AK155028|Ostf1|20409|osteoclast stimulating factor 1	AK149175|Ostf1|20409|osteoclast stimulating factor 1	AK002899|Ostf1|20409|osteoclast stimulating factor 1	AK010074|Ostf1|20409|osteoclast stimulating factor 1	NM_017375|Ostf1|20409|osteoclast stimulating factor 1
mm9_v1_chr11_-_30168153_30168187	1.24162	GLI1..3.p2	AK137356|Spnb2|20742|spectrin beta 2
mm9_v1_chr14_-_21613162_21613325	1.23951	GLI1..3.p2	AF395884|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK154764|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC025597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK078311|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	BC019162|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK081969|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK031213|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	AK054406|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039138|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_001039139|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma	NM_178597|Camk2g|12325|calcium/calmodulin-dependent protein kinase II gamma
mm9_v1_chr16_-_67621054_67621188	1.21049	GLI1..3.p2	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr19_-_5085487_5085548	1.18843	GLI1..3.p2	AK144531|Tmem151a|381199|transmembrane protein 151A	AK155690|Tmem151a|381199|transmembrane protein 151A	AK163651|Tmem151a|381199|transmembrane protein 151A	AK139456|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr9_+_45238375_45238483	1.1875	GLI1..3.p2	NM_001081270|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AK147531|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487345|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1	AF487347|Dscaml1|114873|Down syndrome cell adhesion molecule-like 1
mm9_v1_chr1_-_64167952_64168022	1.18449	GLI1..3.p2	BC019604|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	NM_033563|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	BC004700|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	BC040794|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AF338369|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK149362|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr2_-_151458299_151458319	1.18215	GLI1..3.p2	AK047595|Snph|241727|syntaphilin	AK138230|Snph|241727|syntaphilin	AK047568|Snph|241727|syntaphilin
mm9_v1_chr1_+_131170053_131170056	1.16015	GLI1..3.p2	AK083798|Thsd7b|210417|thrombospondin, type I, domain containing 7B
mm9_v1_chrX_+_156065141_156065596	1.16002	GLI1..3.p2	AK049182|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK172022|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK080930|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_001135727|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK038540|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK208632|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr18_+_40416615_40416659	1.15552	GLI1..3.p2	AK013700|2900055J20Rik|73001|RIKEN cDNA 2900055J20 gene
mm9_v1_chr15_-_85412250_85412299	1.09467	GLI1..3.p2	BC058398|Wnt7b|22422|wingless-related MMTV integration site 7B	NM_009528|Wnt7b|22422|wingless-related MMTV integration site 7B
mm9_v1_chr5_-_3802874_3803076	1.08947	GLI1..3.p2	BC145510|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC145511|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC150792|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK129343|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr12_+_62624134_62624139	1.08719	GLI1..3.p2	AK078312|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr5_-_118694869_118695124	1.08544	GLI1..3.p2	AK046850|Rnft2|269695|ring finger protein, transmembrane 2	NM_172998|Rnft2|269695|ring finger protein, transmembrane 2	BC057302|Rnft2|269695|ring finger protein, transmembrane 2	AK148930|Rnft2|269695|ring finger protein, transmembrane 2	NM_001109902|Rnft2|269695|ring finger protein, transmembrane 2	AK090256|Rnft2|269695|ring finger protein, transmembrane 2
mm9_v1_chr16_-_22439642_22439745	1.085	GLI1..3.p2	BC034680|Etv5|104156|ets variant gene 5	NM_023794|Etv5|104156|ets variant gene 5	AK031452|Etv5|104156|ets variant gene 5	AK168881|Etv5|104156|ets variant gene 5	AK049234|Etv5|104156|ets variant gene 5	AK164091|Etv5|104156|ets variant gene 5	AK018368|Etv5|104156|ets variant gene 5
mm9_v1_chr2_-_77118632_77118710	1.07839	GLI1..3.p2	BC013245|Sestd1|228071|SEC14 and spectrin domains 1	AK047939|Sestd1|228071|SEC14 and spectrin domains 1	BC044853|Sestd1|228071|SEC14 and spectrin domains 1	NM_175465|Sestd1|228071|SEC14 and spectrin domains 1
mm9_v1_chr16_+_78301923_78302076	1.07311	GLI1..3.p2	NM_001025192|Cxadr|13052|coxsackie virus and adenovirus receptor	NM_009988|Cxadr|13052|coxsackie virus and adenovirus receptor	AK004908|Cxadr|13052|coxsackie virus and adenovirus receptor	AK145569|Cxadr|13052|coxsackie virus and adenovirus receptor	AK160457|Cxadr|13052|coxsackie virus and adenovirus receptor	BC016457|Cxadr|13052|coxsackie virus and adenovirus receptor	BC004680|Cxadr|13052|coxsackie virus and adenovirus receptor	U90715|Cxadr|13052|coxsackie virus and adenovirus receptor	Y10320|Cxadr|13052|coxsackie virus and adenovirus receptor
mm9_v1_chr8_-_33028674_33028862	1.06782	GLI1..3.p2	AY648975|Nrg1|211323|neuregulin 1	NM_178591|Nrg1|211323|neuregulin 1	BC151113|Nrg1|211323|neuregulin 1	AK164499|Nrg1|211323|neuregulin 1	AK048708|Nrg1|211323|neuregulin 1	AK141037|Nrg1|211323|neuregulin 1
mm9_v1_chrX_+_33735898_33735993	1.05895	GLI1..3.p2	NM_028325|Zcchc12|72693|zinc finger, CCHC domain containing 12	BC049071|Zcchc12|72693|zinc finger, CCHC domain containing 12	BC055714|Zcchc12|72693|zinc finger, CCHC domain containing 12	AK012833|Zcchc12|72693|zinc finger, CCHC domain containing 12
mm9_v1_chr15_-_94234549_94234733	1.05151	GLI1..3.p2	AJ512753|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	BC121792|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	AY189815|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	AY189816|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm9_v1_chr13_+_34967479_34967496	1.04942	GLI1..3.p2	AK021274|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK083926|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK020579|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr4_-_41222121_41222174	1.04813	GLI1..3.p2	BC007179|Ubap2|68926|ubiquitin-associated protein 2	NM_026872|Ubap2|68926|ubiquitin-associated protein 2
mm9_v1_chr7_-_6649139_6649164	1.04175	GLI1..3.p2	AF111101|Zim1|22776|zinc finger, imprinted 1	BC066196|Zim1|22776|zinc finger, imprinted 1	NM_011769|Zim1|22776|zinc finger, imprinted 1	AK086590|Zim1|22776|zinc finger, imprinted 1
mm9_v1_chr9_+_69137694_69137758	1.02767	GLI1..3.p2	AK155827|Rora|19883|RAR-related orphan receptor alpha	BC003757|Rora|19883|RAR-related orphan receptor alpha	S82720|Rora|19883|RAR-related orphan receptor alpha	AK149294|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr13_+_54472705_54472742	1.02629	GLI1..3.p2	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr11_-_120239930_120240089	1.01974	GLI1..3.p2	BC034203|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK009114|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK148234|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK147900|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK165631|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	AK082976|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene	NM_027980|2310003H01Rik|71885|RIKEN cDNA 2310003H01 gene
mm9_v1_chr4_-_150482562_150482580	1.01297	GLI1..3.p2	AK168378|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr17_-_24346280_24346475	1.0075	GLI1..3.p2	BC094362|Ntn3|18209|netrin 3	NM_010947|Ntn3|18209|netrin 3	AK083904|Ntn3|18209|netrin 3	BC053038|Ntn3|18209|netrin 3	AK031199|Ntn3|18209|netrin 3
mm9_v1_chr8_+_87560809_87560830	0.994551	GLI1..3.p2	AK154985|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	AK155760|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)	NM_145390|Tnpo2|212999|transportin 2 (importin 3, karyopherin beta 2b)
mm9_v1_chr5_-_133018666_133018677	0.993054	GLI1..3.p2	AK077988|Auts2|319974|autism susceptibility candidate 2
mm9_v1_chr13_-_54712629_54712744	0.991607	GLI1..3.p2	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr1_-_108610520_108610597	0.991258	GLI1..3.p2	BC095964|Bcl2|12043|B-cell leukemia/lymphoma 2	AK042257|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr13_+_81922310_81922339	0.961208	GLI1..3.p2	Y12474|Cetn3|12626|centrin 3
mm9_v1_chr17_+_87362450_87362450	0.958423	GLI1..3.p2	BC056363|Rhoq|104215|ras homolog gene family, member Q	NM_145491|Rhoq|104215|ras homolog gene family, member Q
mm9_v1_chr9_+_56842653_56842808	0.947604	GLI1..3.p2	BC053017|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	NM_019651|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chrX_+_97963061_97963090	0.943568	GLI1..3.p2	AK122474|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_001177778|Dlg3|53310|discs, large homolog 3 (Drosophila)	BC094368|Dlg3|53310|discs, large homolog 3 (Drosophila)	NM_016747|Dlg3|53310|discs, large homolog 3 (Drosophila)	D87117|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr17_+_24625530_24625580	0.943478	GLI1..3.p2	AK014376|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr11_-_101087738_101087767	0.942597	GLI1..3.p2	AK045374|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK138942|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	U60453|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK164192|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	AK140694|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)	NM_007970|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr7_+_134094045_134094242	0.936843	GLI1..3.p2	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr16_-_17928270_17928336	0.92425	GLI1..3.p2	AK159289|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	AK170191|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	NM_153150|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr2_+_174155592_174155844	0.918176	GLI1..3.p2	AK147051|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_001077510|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC080816|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC061496|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK168996|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC013824|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC013840|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	Y00703|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC106133|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC092055|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr10_-_67741461_67741487	0.917247	GLI1..3.p2	AK029818|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK031596|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AK017396|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	NM_023598|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)	AF280065|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)
mm9_v1_chr14_+_105657968_105657981	0.907008	GLI1..3.p2	BC071237|Ndfip2|76273|Nedd4 family interacting protein 2	BC106125|Ndfip2|76273|Nedd4 family interacting protein 2	AK078939|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr11_+_78059452_78059655	0.905525	GLI1..3.p2	AK002496|Sdf2|20316|stromal cell derived factor 2	BC062881|Sdf2|20316|stromal cell derived factor 2	BC087871|Sdf2|20316|stromal cell derived factor 2	D50646|Sdf2|20316|stromal cell derived factor 2
mm9_v1_chr2_+_126378563_126378890	0.90403	GLI1..3.p2	AK165446|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	NM_011978|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144069|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC013442|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC024735|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC022170|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AJ223958|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144070|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF033031|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF072757|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2
mm9_v1_chr4_-_129118034_129118085	0.893468	GLI1..3.p2	BC023839|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK140914|Zbtb8b|215627|zinc finger and BTB domain containing 8b	AK163930|Zbtb8b|215627|zinc finger and BTB domain containing 8b	NM_153541|Zbtb8b|215627|zinc finger and BTB domain containing 8b
mm9_v1_chr2_+_169459145_169459258	0.89226	GLI1..3.p2	NM_080455|Tshz2|228911|teashirt zinc finger family member 2	BC079550|Tshz2|228911|teashirt zinc finger family member 2
mm9_v1_chr1_-_72921438_72921462	0.890856	GLI1..3.p2	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr11_+_68505612_68505615	0.889236	GLI1..3.p2	AK029236|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	BC098465|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr10_-_126497197_126497239	0.888271	GLI1..3.p2	AK158026|March9|216438|membrane-associated ring finger (C3HC4) 9	NM_001033262|March9|216438|membrane-associated ring finger (C3HC4) 9
mm9_v1_chr18_-_70301202_70301243	0.881661	GLI1..3.p2	AK045312|Rab27b|80718|RAB27b, member RAS oncogene family	AK086987|Rab27b|80718|RAB27b, member RAS oncogene family	AK049854|Rab27b|80718|RAB27b, member RAS oncogene family	NM_001082553|Rab27b|80718|RAB27b, member RAS oncogene family
mm9_v1_chrX_-_133403050_133403118	0.875909	GLI1..3.p2	BC107383|Rab9b|319642|RAB9B, member RAS oncogene family	AK034442|Rab9b|319642|RAB9B, member RAS oncogene family	NM_176971|Rab9b|319642|RAB9B, member RAS oncogene family	AK049693|Rab9b|319642|RAB9B, member RAS oncogene family
mm9_v1_chr14_-_47809063_47809127	0.868375	GLI1..3.p2	L09737|Gch1|14528|GTP cyclohydrolase 1	BC005643|Gch1|14528|GTP cyclohydrolase 1	NM_008102|Gch1|14528|GTP cyclohydrolase 1	BC069921|Gch1|14528|GTP cyclohydrolase 1	AK150657|Gch1|14528|GTP cyclohydrolase 1	AK152571|Gch1|14528|GTP cyclohydrolase 1
mm9_v1_chr1_+_155747072_155747097	0.867675	GLI1..3.p2	AK137969|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159106|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK160670|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AY044241|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	NM_008131|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK162685|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK168493|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	BC015086|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	X16314|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr16_+_49855691_49855777	0.861914	GLI1..3.p2	NM_010581|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	Z25524|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chrX_+_151696991_151697138	0.858342	GLI1..3.p2	AK168713|Acot9|56360|acyl-CoA thioesterase 9	NM_019736|Acot9|56360|acyl-CoA thioesterase 9	AK076513|Acot9|56360|acyl-CoA thioesterase 9	BC021763|Acot9|56360|acyl-CoA thioesterase 9	AK002892|Acot9|56360|acyl-CoA thioesterase 9	AK009717|Acot9|56360|acyl-CoA thioesterase 9	AK088082|Acot9|56360|acyl-CoA thioesterase 9	AK170876|Acot9|56360|acyl-CoA thioesterase 9	AJ238893|Acot9|56360|acyl-CoA thioesterase 9	AB028898|Acot9|56360|acyl-CoA thioesterase 9
mm9_v1_chr4_+_108551674_108551769	0.855813	GLI1..3.p2	AK082959|Rab3b|69908|RAB3B, member RAS oncogene family	NM_023537|Rab3b|69908|RAB3B, member RAS oncogene family	AK012165|Rab3b|69908|RAB3B, member RAS oncogene family	BC051918|Rab3b|69908|RAB3B, member RAS oncogene family
mm9_v1_chr5_-_139801315_139801476	0.853554	GLI1..3.p2	NM_172723|Adap1|231821|ArfGAP with dual PH domains 1
mm9_v1_chrX_-_91787353_91787369	0.852655	GLI1..3.p2	AK135452|Maged1|94275|melanoma antigen, family D, 1	AK146867|Maged1|94275|melanoma antigen, family D, 1	AK146908|Maged1|94275|melanoma antigen, family D, 1	AK049660|Maged1|94275|melanoma antigen, family D, 1	AK087937|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr2_+_31101302_31101442	0.852104	GLI1..3.p2	BC059825|Ncs1|14299|neuronal calcium sensor 1	NM_019681|Ncs1|14299|neuronal calcium sensor 1
mm9_v1_chr9_+_56843159_56843305	0.852004	GLI1..3.p2	AK089069|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9	AF013490|Ptpn9|56294|protein tyrosine phosphatase, non-receptor type 9
mm9_v1_chr2_+_28048511_28048566	0.843016	GLI1..3.p2	D78264|Olfm1|56177|olfactomedin 1	D78265|Olfm1|56177|olfactomedin 1
mm9_v1_chrX_-_93152262_93152300	0.841264	GLI1..3.p2	AK089160|Las1l|76130|LAS1-like (S. cerevisiae)	NM_152822|Las1l|76130|LAS1-like (S. cerevisiae)	AK163919|Las1l|76130|LAS1-like (S. cerevisiae)
mm9_v1_chr13_-_34169854_34169887	0.829412	GLI1..3.p2	BC055441|Tubb2a|22151|tubulin, beta 2A	AK134545|Tubb2a|22151|tubulin, beta 2A	NM_009450|Tubb2a|22151|tubulin, beta 2A
mm9_v1_chr9_+_68501551_68501608	0.828682	GLI1..3.p2	AK086033|Rora|19883|RAR-related orphan receptor alpha	NM_013646|Rora|19883|RAR-related orphan receptor alpha	U53228|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr14_+_105657889_105657939	0.828515	GLI1..3.p2	NM_001190989|Ndfip2|76273|Nedd4 family interacting protein 2	NM_029561|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr7_-_36103433_36103463	0.822514	GLI1..3.p2	BC100577|Gpatch1|67471|G patch domain containing 1	AK154571|Gpatch1|67471|G patch domain containing 1	AK014367|Gpatch1|67471|G patch domain containing 1	BC125584|Gpatch1|67471|G patch domain containing 1	BC132155|Gpatch1|67471|G patch domain containing 1	AK004868|Gpatch1|67471|G patch domain containing 1	NM_026181|Gpatch1|67471|G patch domain containing 1
mm9_v1_chr4_+_73897782_73897907	0.820314	GLI1..3.p2	AK173023|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_144787|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144890|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144103|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK081769|Kdm4c|76804|lysine (K)-specific demethylase 4C	BC020180|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK048092|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK042792|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK053104|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr1_-_95532242_95532249	0.817389	GLI1..3.p2	AK152917|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr9_-_45714409_45714473	0.816007	GLI1..3.p2	BC094247|Rnf214|235315|ring finger protein 214	AK033867|Rnf214|235315|ring finger protein 214
mm9_v1_chr14_-_52898915_52898939	0.805605	GLI1..3.p2	AB232586|Rab2b|76338|RAB2B, member RAS oncogene family	AK160351|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr7_-_81158546_81158567	0.805303	GLI1..3.p2	X83562|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	BC096546|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	NM_009181|St8sia2|20450|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm9_v1_chr8_-_13890244_13890296	0.80517	GLI1..3.p2	BC029192|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK010573|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	AK008882|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene	NM_025556|2410022L05Rik|66423|RIKEN cDNA 2410022L05 gene
mm9_v1_chr18_+_37637421_37637642	0.8037	GLI1..3.p2	NM_053141|Pcdhb16|93887|protocadherin beta 16	AK030612|Pcdhb16|93887|protocadherin beta 16	AK036829|Pcdhb16|93887|protocadherin beta 16	BC115720|Pcdhb16|93887|protocadherin beta 16	BC116625|Pcdhb16|93887|protocadherin beta 16	AY013777|Pcdhb16|93887|protocadherin beta 16
mm9_v1_chr2_+_32143868_32143875	0.802117	GLI1..3.p2	BC011407|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr12_+_25183430_25183496	0.801521	GLI1..3.p2	NM_020614|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	BC057167|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	AK165580|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	AK131963|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	AK015111|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	BC019993|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	BC086643|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	AK170313|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	BC069907|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	BC094035|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	BC125027|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B	BC125028|Taf1b|21340|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
mm9_v1_chr13_+_54472833_54472842	0.800443	GLI1..3.p2	BC048487|Cplx2|12890|complexin 2
mm9_v1_chr11_+_29592946_29593072	0.798751	GLI1..3.p2	AK220511|Rtn4|68585|reticulon 4	AY102281|Rtn4|68585|reticulon 4	AY102282|Rtn4|68585|reticulon 4	AY102284|Rtn4|68585|reticulon 4	AY114152|Rtn4|68585|reticulon 4	AY114153|Rtn4|68585|reticulon 4	AK034902|Rtn4|68585|reticulon 4	BC056373|Rtn4|68585|reticulon 4
mm9_v1_chr6_-_72389491_72389552	0.798151	GLI1..3.p2	BC003451|Mat2a|232087|methionine adenosyltransferase II, alpha	AB070266|Mat2a|232087|methionine adenosyltransferase II, alpha	BC058360|Mat2a|232087|methionine adenosyltransferase II, alpha	AK145407|Mat2a|232087|methionine adenosyltransferase II, alpha	AK052764|Mat2a|232087|methionine adenosyltransferase II, alpha	AK133960|Mat2a|232087|methionine adenosyltransferase II, alpha	AK144189|Mat2a|232087|methionine adenosyltransferase II, alpha	AK150040|Mat2a|232087|methionine adenosyltransferase II, alpha	AK151281|Mat2a|232087|methionine adenosyltransferase II, alpha	AK160869|Mat2a|232087|methionine adenosyltransferase II, alpha	AK161852|Mat2a|232087|methionine adenosyltransferase II, alpha	AK164137|Mat2a|232087|methionine adenosyltransferase II, alpha	AK166671|Mat2a|232087|methionine adenosyltransferase II, alpha	AK168155|Mat2a|232087|methionine adenosyltransferase II, alpha	AK169705|Mat2a|232087|methionine adenosyltransferase II, alpha	AK034757|Mat2a|232087|methionine adenosyltransferase II, alpha	NM_145569|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr4_-_147222474_147222483	0.793372	GLI1..3.p2	AK131865|Zfp933|242747|zinc finger protein 933	BC058101|Zfp933|242747|zinc finger protein 933	NM_198619|Zfp933|242747|zinc finger protein 933
mm9_v1_chr7_+_133966816_133966816	0.793331	GLI1..3.p2	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr4_+_144483110_144483188	0.785738	GLI1..3.p2	AK087137|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr8_-_125777949_125778247	0.785632	GLI1..3.p2	AK051715|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK154409|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK155433|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK010402|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK005046|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK028751|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK151498|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	NM_028200|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	BC057621|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK032561|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AY751521|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene
mm9_v1_chr11_+_79404713_79404722	0.781601	GLI1..3.p2	AK046734|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)	NM_175543|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr5_-_124545776_124545806	0.777949	GLI1..3.p2	AK044140|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AB093298|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	BC026455|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AF216495|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	NM_019875|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr2_-_103637795_103637829	0.777915	GLI1..3.p2	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr10_-_49508472_49508559	0.777447	GLI1..3.p2	D10054|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	AK141539|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_001111268|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)	NM_010349|Grik2|14806|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm9_v1_chr3_-_97672147_97672234	0.77644	GLI1..3.p2	AK141917|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_177145|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr11_-_8368505_8368528	0.766378	GLI1..3.p2	AK158101|Tns3|319939|tensin 3
mm9_v1_chr8_-_67171481_67171562	0.765007	GLI1..3.p2	AK002935|Cpe|12876|carboxypeptidase E	AK013509|Cpe|12876|carboxypeptidase E
mm9_v1_chr19_+_55390770_55390846	0.764482	GLI1..3.p2	AK135463|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK014541|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK148281|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK030538|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AF035209|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	BC089321|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AF035823|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK028646|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	NM_016862|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	BC012211|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)	AK035895|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
mm9_v1_chr3_+_96400524_96400617	0.76276	GLI1..3.p2	NM_001024851|Ankrd34a|545554|ankyrin repeat domain 34A	BC052924|Ankrd34a|545554|ankyrin repeat domain 34A
mm9_v1_chr11_-_30168142_30168145	0.761431	GLI1..3.p2	BC092544|Spnb2|20742|spectrin beta 2
mm9_v1_chr6_+_29383152_29383347	0.759473	GLI1..3.p2	NM_001081185|Flnc|68794|filamin C, gamma	AK051985|Flnc|68794|filamin C, gamma	BC151097|Flnc|68794|filamin C, gamma	BC158128|Flnc|68794|filamin C, gamma	BC172159|Flnc|68794|filamin C, gamma
mm9_v1_chr13_-_53472719_53472729	0.758511	GLI1..3.p2	AK084445|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	X95641|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK079578|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	BC046323|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	NM_009269|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1
mm9_v1_chr1_-_127808790_127808807	0.75796	GLI1..3.p2	AB041649|Lypd1|72585|Ly6/Plaur domain containing 1	AK045592|Lypd1|72585|Ly6/Plaur domain containing 1	NM_145100|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr3_+_55586431_55586482	0.754501	GLI1..3.p2	NM_010750|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK043552|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF040945|Mab21l1|17116|mab-21-like 1 (C. elegans)	AF228913|Mab21l1|17116|mab-21-like 1 (C. elegans)	AK032114|Mab21l1|17116|mab-21-like 1 (C. elegans)	BC014750|Mab21l1|17116|mab-21-like 1 (C. elegans)
mm9_v1_chr1_-_97564139_97564174	0.746287	GLI1..3.p2	BC060112|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AJ223956|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_001159745|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	NM_009183|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	X86000|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr16_+_91547266_91547421	0.745767	GLI1..3.p2	AK137165|Ifngr2|15980|interferon gamma receptor 2	AK169907|Ifngr2|15980|interferon gamma receptor 2	AK165193|Ifngr2|15980|interferon gamma receptor 2	AK143214|Ifngr2|15980|interferon gamma receptor 2	AK086929|Ifngr2|15980|interferon gamma receptor 2	AK146995|Ifngr2|15980|interferon gamma receptor 2	S69336|Ifngr2|15980|interferon gamma receptor 2	AK087158|Ifngr2|15980|interferon gamma receptor 2	BC055745|Ifngr2|15980|interferon gamma receptor 2	NM_008338|Ifngr2|15980|interferon gamma receptor 2
mm9_v1_chr17_-_80689434_80689517	0.745117	GLI1..3.p2	BC079618|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC066091|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC065169|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	AK042947|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr9_-_108092712_108092716	0.736593	GLI1..3.p2	NM_007567|Bsn|12217|bassoon
mm9_v1_chr7_+_138009310_138009466	0.732472	GLI1..3.p2	AK053879|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK083340|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	AK044224|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	BC020017|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	NM_133942|Plekha1|101476|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm9_v1_chr2_-_92886300_92886323	0.731874	GLI1..3.p2	NM_001177536|Prdm11|100042784|PR domain containing 11
mm9_v1_chr15_-_75397243_75397344	0.723941	GLI1..3.p2	AF127091|Ly6h|23934|lymphocyte antigen 6 complex, locus H	BC028758|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135688|Ly6h|23934|lymphocyte antigen 6 complex, locus H	AK021002|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr9_-_88333710_88333807	0.723737	GLI1..3.p2	AK046839|Snx14|244962|sorting nexin 14	AK049371|Snx14|244962|sorting nexin 14	AK082389|Snx14|244962|sorting nexin 14	BC080799|Snx14|244962|sorting nexin 14	NM_172926|Snx14|244962|sorting nexin 14
mm9_v1_chr1_+_75542840_75542910	0.721961	GLI1..3.p2	NM_009208|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	BC080271|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	M28383|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3
mm9_v1_chr7_-_26082941_26082973	0.718859	GLI1..3.p2	AK167496|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	BC067015|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	AK039375|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	AK154547|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	NM_008776|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	U57746|Pafah1b3|18476|platelet-activating factor acetylhydrolase, isoform 1b, subunit 3
mm9_v1_chr12_+_3365147_3365223	0.716564	GLI1..3.p2	AK133649|Kif3c|16570|kinesin family member 3C	BC053053|Kif3c|16570|kinesin family member 3C
mm9_v1_chr12_+_33063653_33063723	0.715734	GLI1..3.p2	NM_001162903|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr6_-_126114938_126114977	0.715533	GLI1..3.p2	BC065785|Ntf3|18205|neurotrophin 3	AK132586|Ntf3|18205|neurotrophin 3	NM_001164035|Ntf3|18205|neurotrophin 3
mm9_v1_chr5_-_84846256_84846332	0.715018	GLI1..3.p2	AK089143|Epha5|13839|Eph receptor A5
mm9_v1_chr7_-_11080687_11080731	0.711768	GLI1..3.p2	BC050942|Zik1|22775|zinc finger protein interacting with K protein 1	BC067196|Zik1|22775|zinc finger protein interacting with K protein 1	AK159077|Zik1|22775|zinc finger protein interacting with K protein 1	AK146692|Zik1|22775|zinc finger protein interacting with K protein 1	U69133|Zik1|22775|zinc finger protein interacting with K protein 1	NM_009577|Zik1|22775|zinc finger protein interacting with K protein 1
mm9_v1_chr3_-_127111968_127111977	0.700509	GLI1..3.p2	AK036018|Ank2|109676|ankyrin 2, brain
mm9_v1_chr17_+_37182986_37183080	0.700255	GLI1..3.p2	AF114168|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AF008649|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chr2_+_49474840_49474940	0.699296	GLI1..3.p2	AK158884|Kif5c|16574|kinesin family member 5C	AB093244|Kif5c|16574|kinesin family member 5C
mm9_v1_chrX_+_132330678_132330726	0.698307	GLI1..3.p2	AK050919|Gprasp1|67298|G protein-coupled receptor associated sorting protein 1
mm9_v1_chr7_-_25857275_25857387	0.695488	GLI1..3.p2	BC052009|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	BC110682|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	D10011|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)	NM_008168|Grik5|14809|glutamate receptor, ionotropic, kainate 5 (gamma 2)
mm9_v1_chr12_+_103793130_103793206	0.695319	GLI1..3.p2	M64278|Chga|12652|chromogranin A	NM_007693|Chga|12652|chromogranin A	AK144504|Chga|12652|chromogranin A	BC026554|Chga|12652|chromogranin A
mm9_v1_chr18_+_52928026_52928056	0.693568	GLI1..3.p2	AK042895|Gm5078|320291|predicted gene 5078	AK016941|Sncaip|67847|synuclein, alpha interacting protein (synphilin)
mm9_v1_chrX_+_71550562_71550629	0.692846	GLI1..3.p2	AK156224|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK036969|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK028880|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK171216|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC025606|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK032869|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC037598|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr18_-_43552694_43552984	0.690485	GLI1..3.p2	BC023003|Dpysl3|22240|dihydropyrimidinase-like 3	NM_009468|Dpysl3|22240|dihydropyrimidinase-like 3	X87817|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr9_+_45714587_45714651	0.689232	GLI1..3.p2	AK050638|Rnf214|235315|ring finger protein 214	BC056456|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	NM_008794|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr9_+_108192759_108192800	0.689088	GLI1..3.p2	AK013602|Nicn1|66257|nicolin 1	AK075732|Nicn1|66257|nicolin 1	AK146890|Nicn1|66257|nicolin 1	AK169135|Nicn1|66257|nicolin 1	AK002789|Nicn1|66257|nicolin 1	BC024050|Nicn1|66257|nicolin 1	NM_025449|Nicn1|66257|nicolin 1	AJ299741|Nicn1|66257|nicolin 1
mm9_v1_chr1_+_134776927_134777014	0.684983	GLI1..3.p2	AK036271|Lrrn2|16980|leucine rich repeat protein 2, neuronal	AK039216|Lrrn2|16980|leucine rich repeat protein 2, neuronal	NM_010732|Lrrn2|16980|leucine rich repeat protein 2, neuronal
mm9_v1_chr13_-_14615371_14615494	0.684201	GLI1..3.p2	AK051569|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK084246|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK086170|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK047678|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	NM_001081348|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	AK053694|Hecw1|94253|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
mm9_v1_chr12_+_33832641_33832680	0.684186	GLI1..3.p2	AK013145|Atxn7l1|380753|ataxin 7-like 1	BC100598|Atxn7l1|380753|ataxin 7-like 1	BC017546|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chr11_+_83116262_83116315	0.683475	GLI1..3.p2	AK004975|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit
mm9_v1_chr16_+_5885447_5885760	0.682527	GLI1..3.p2	AB041596|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AK158194|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr1_-_95532270_95532276	0.68093	GLI1..3.p2	AK148041|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr6_-_35489703_35489856	0.68026	GLI1..3.p2	AK151106|Mtpn|14489|myotrophin	AK151147|Mtpn|14489|myotrophin	AK151564|Mtpn|14489|myotrophin	AK152317|Mtpn|14489|myotrophin	AK151687|Mtpn|14489|myotrophin	AK152272|Mtpn|14489|myotrophin	BC043084|Mtpn|14489|myotrophin	AK049398|Mtpn|14489|myotrophin	AK146473|Mtpn|14489|myotrophin	AK145755|Mtpn|14489|myotrophin	D78188|Mtpn|14489|myotrophin	AK002620|Mtpn|14489|myotrophin	AK083888|Mtpn|14489|myotrophin	BC054811|Mtpn|14489|myotrophin	AK150750|Mtpn|14489|myotrophin	AK132029|Mtpn|14489|myotrophin	AK151640|Mtpn|14489|myotrophin	AK151485|Mtpn|14489|myotrophin	AK028027|Mtpn|14489|myotrophin	U20290|Mtpn|14489|myotrophin	AK146305|Mtpn|14489|myotrophin
mm9_v1_chr2_+_181255209_181255262	0.677661	GLI1..3.p2	NM_016775|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK083584|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK007879|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK029006|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK032373|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	BC018231|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr1_+_36125177_36125272	0.673844	GLI1..3.p2	AK144809|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	BC052316|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	NM_015818|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1	AB024566|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1
mm9_v1_chr6_-_60778740_60778989	0.670736	GLI1..3.p2	BC046764|Snca|20617|synuclein, alpha	AK156316|Snca|20617|synuclein, alpha	AK014472|Snca|20617|synuclein, alpha	AF033261|Snca|20617|synuclein, alpha	NM_001042451|Snca|20617|synuclein, alpha
mm9_v1_chr4_+_42929523_42929598	0.669727	GLI1..3.p2	AK122428|N28178|230085|expressed sequence N28178
mm9_v1_chr6_+_71443847_71443870	0.665126	GLI1..3.p2	AK134602|Rnf103|22644|ring finger protein 103
mm9_v1_chr9_+_59528002_59528007	0.660934	GLI1..3.p2	AK132182|4933407I18Rik|71121|RIKEN cDNA 4933407I18 gene
mm9_v1_chr15_-_89260070_89260126	0.652839	GLI1..3.p2	
mm9_v1_chr2_-_131178551_131178627	0.651179	GLI1..3.p2	BC096529|Rnf24|51902|ring finger protein 24	AK154093|Rnf24|51902|ring finger protein 24	AK048813|Rnf24|51902|ring finger protein 24	AK015699|Rnf24|51902|ring finger protein 24	AK089207|Rnf24|51902|ring finger protein 24	AK083665|Rnf24|51902|ring finger protein 24	NM_178607|Rnf24|51902|ring finger protein 24
mm9_v1_chr12_+_75385267_75385319	0.648749	GLI1..3.p2	AK007020|1700086L19Rik|74284|RIKEN cDNA 1700086L19 gene
mm9_v1_chr19_+_27292039_27292085	0.647132	GLI1..3.p2	BC013622|Vldlr|22359|very low density lipoprotein receptor	L33417|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr19_+_4711220_4711230	0.646464	GLI1..3.p2	BC079860|Spnb3|20743|spectrin beta 3	NM_021287|Spnb3|20743|spectrin beta 3
mm9_v1_chr1_-_64167818_64167853	0.645916	GLI1..3.p2	AF327568|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr9_+_123438868_123438899	0.644345	GLI1..3.p2	AK154759|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)
mm9_v1_chr2_-_119096952_119096961	0.642574	GLI1..3.p2	BC021307|Rhov|228543|ras homolog gene family, member V	AK036775|Rhov|228543|ras homolog gene family, member V	AK037170|Rhov|228543|ras homolog gene family, member V	NM_145530|Rhov|228543|ras homolog gene family, member V
mm9_v1_chr6_+_147424392_147424487	0.641989	GLI1..3.p2	AK007917|Ccdc91|67015|coiled-coil domain containing 91	NM_025911|Ccdc91|67015|coiled-coil domain containing 91	BC049073|Ccdc91|67015|coiled-coil domain containing 91	BC006734|Ccdc91|67015|coiled-coil domain containing 91
mm9_v1_chr3_-_158224306_158224367	0.635191	GLI1..3.p2	AK052066|Lrrc7|242274|leucine rich repeat containing 7	AK122498|Lrrc7|242274|leucine rich repeat containing 7
mm9_v1_chrX_-_93152223_93152253	0.633997	GLI1..3.p2	BC032218|Las1l|76130|LAS1-like (S. cerevisiae)	AK018059|Las1l|76130|LAS1-like (S. cerevisiae)	BC141155|Las1l|76130|LAS1-like (S. cerevisiae)
mm9_v1_chr1_+_131169878_131169880	0.632074	GLI1..3.p2	AK052119|Thsd7b|210417|thrombospondin, type I, domain containing 7B	NM_172485|Thsd7b|210417|thrombospondin, type I, domain containing 7B
mm9_v1_chr13_+_34967386_34967448	0.631296	GLI1..3.p2	BC080864|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC059713|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK078611|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC141272|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC141273|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	BC042521|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr14_-_56209895_56209937	0.631213	GLI1..3.p2	NM_001029855|Psme2|19188|proteasome (prosome, macropain) 28 subunit, beta
mm9_v1_chr5_-_29704889_29704943	0.630302	GLI1..3.p2	NM_020295|Lmbr1|56873|limb region 1
mm9_v1_chr6_-_120866775_120866878	0.630183	GLI1..3.p2	AK077657|Bid|12122|BH3 interacting domain death agonist	BC002031|Bid|12122|BH3 interacting domain death agonist	NM_007544|Bid|12122|BH3 interacting domain death agonist	AK052356|Bid|12122|BH3 interacting domain death agonist	AK045731|Bid|12122|BH3 interacting domain death agonist	AK051076|Bid|12122|BH3 interacting domain death agonist	AK161235|Bid|12122|BH3 interacting domain death agonist
mm9_v1_chr6_-_113481340_113481484	0.627039	GLI1..3.p2	AK206599|Tmem111|66087|transmembrane protein 111	AK213319|Tmem111|66087|transmembrane protein 111	AK218418|Tmem111|66087|transmembrane protein 111	AK167819|Tmem111|66087|transmembrane protein 111
mm9_v1_chr4_-_47487166_47487217	0.626286	GLI1..3.p2	AB161357|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	AB041604|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	BC051951|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	BC052411|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	AK004997|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)	AK010673|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)
mm9_v1_chr12_-_71448300_71448379	0.622869	GLI1..3.p2	AK129109|Trim9|94090|tripartite motif-containing 9	AK049907|Trim9|94090|tripartite motif-containing 9	AK035807|Trim9|94090|tripartite motif-containing 9	AK028280|Trim9|94090|tripartite motif-containing 9	AK048875|Trim9|94090|tripartite motif-containing 9	AK163123|Trim9|94090|tripartite motif-containing 9
mm9_v1_chr8_-_107033781_107033809	0.621468	GLI1..3.p2	BC113771|Ccdc79|320022|coiled-coil domain containing 79	BC129814|Ccdc79|320022|coiled-coil domain containing 79	AK029754|Ccdc79|320022|coiled-coil domain containing 79	NM_180958|Ccdc79|320022|coiled-coil domain containing 79	AK030157|Ccdc79|320022|coiled-coil domain containing 79
mm9_v1_chr12_+_89961317_89961336	0.620402	GLI1..3.p2	AK078216|Nrxn3|18191|neurexin III	AK082055|Nrxn3|18191|neurexin III	NM_001198587|Nrxn3|18191|neurexin III	AK149250|Nrxn3|18191|neurexin III
mm9_v1_chr6_-_115201846_115201865	0.620259	GLI1..3.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr5_-_124171015_124171067	0.620128	GLI1..3.p2	AK156770|Zcchc8|70650|zinc finger, CCHC domain containing 8	AK032349|Zcchc8|70650|zinc finger, CCHC domain containing 8	NM_027494|Zcchc8|70650|zinc finger, CCHC domain containing 8
mm9_v1_chr11_+_68505616_68505655	0.617747	GLI1..3.p2	AK045066|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	AK045074|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	BC089011|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr17_-_34168488_34168647	0.616289	GLI1..3.p2	BC115426|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	BC115427|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	M32010|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	AK159968|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	AK145956|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	AK087839|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	AK167344|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	NM_001077709|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7	NM_008202|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7
mm9_v1_chr9_-_110019806_110019945	0.615249	GLI1..3.p2	BC062885|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK153969|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK184646|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK159601|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30	AK146326|Dhx30|72831|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm9_v1_chr2_+_69660426_69660529	0.613214	GLI1..3.p2	BC072626|Klhl23|277396|kelch-like 23 (Drosophila)	NM_177784|Klhl23|277396|kelch-like 23 (Drosophila)	AK048518|Klhl23|277396|kelch-like 23 (Drosophila)
mm9_v1_chr11_+_77576790_77576810	0.612943	GLI1..3.p2	AK146852|Myo18a|360013|myosin XVIIIA
mm9_v1_chr11_-_107656007_107656024	0.610625	GLI1..3.p2	AK144253|Cacng4|54377|calcium channel, voltage-dependent, gamma subunit 4
mm9_v1_chr2_-_11699120_11699184	0.606289	GLI1..3.p2	AK083118|Fbxo18|50755|F-box protein 18	AK147829|Fbxo18|50755|F-box protein 18	BC031393|Fbxo18|50755|F-box protein 18	NM_015792|Fbxo18|50755|F-box protein 18	AK084645|Fbxo18|50755|F-box protein 18	AK154357|Fbxo18|50755|F-box protein 18	AK158937|Fbxo18|50755|F-box protein 18
mm9_v1_chr13_-_10360048_10360092	0.605949	GLI1..3.p2	AK080950|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac	NM_033269|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac	AK051841|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac
mm9_v1_chr5_-_123350242_123350397	0.602505	GLI1..3.p2	AK031626|Kdm2b|30841|lysine (K)-specific demethylase 2B	BC057622|Kdm2b|30841|lysine (K)-specific demethylase 2B	NM_013910|Kdm2b|30841|lysine (K)-specific demethylase 2B
mm9_v1_chr10_-_127057998_127058060	0.593572	GLI1..3.p2	AK153375|Lrp1|16971|low density lipoprotein receptor-related protein 1	AK153549|Lrp1|16971|low density lipoprotein receptor-related protein 1	AK149974|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr4_+_137950977_137951112	0.59339	GLI1..3.p2	AB041806|AB041806|58213|hypothetical protein, MNCb-2457
mm9_v1_chr6_-_57775039_57775171	0.592776	GLI1..3.p2	BC024884|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170152|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170832|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK030975|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	BC024822|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	NM_146168|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK031812|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK158041|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK165256|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1
mm9_v1_chr4_+_120527397_120527477	0.592575	GLI1..3.p2	AK047745|Rims3|242662|regulating synaptic membrane exocytosis 3	AK043152|Rims3|242662|regulating synaptic membrane exocytosis 3
mm9_v1_chr8_+_93432505_93432512	0.582871	GLI1..3.p2	AK084000|Chd9|109151|chromodomain helicase DNA binding protein 9
mm9_v1_chr19_+_28909559_28909655	0.576739	GLI1..3.p2	AK018188|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK045632|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK051428|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	AK083097|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC065099|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	BC064797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	D43797|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	NM_009199|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	U73521|Slc1a1|20510|solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
mm9_v1_chr12_+_112512884_112512979	0.5763	GLI1..3.p2	AK088429|Amn|93835|amnionless
mm9_v1_chr11_-_100621034_100621091	0.576075	GLI1..3.p2	BC150990|Kcnh4|380728|potassium voltage-gated channel, subfamily H (eag-related), member 4	BC150994|Kcnh4|380728|potassium voltage-gated channel, subfamily H (eag-related), member 4	NM_001081194|Kcnh4|380728|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm9_v1_chr7_+_69521858_69521905	0.575864	GLI1..3.p2	NM_013779|Magel2|27385|melanoma antigen, family L, 2	BC062913|Magel2|27385|melanoma antigen, family L, 2	AK086725|Magel2|27385|melanoma antigen, family L, 2	AK082944|Magel2|27385|melanoma antigen, family L, 2
mm9_v1_chr9_+_110207672_110207732	0.573561	GLI1..3.p2	NM_001081381|2610002I17Rik|72341|RIKEN cDNA 2610002I17	AK075986|2610002I17Rik|72341|RIKEN cDNA 2610002I17	AK011270|2610002I17Rik|72341|RIKEN cDNA 2610002I17	BC048732|2610002I17Rik|72341|RIKEN cDNA 2610002I17
mm9_v1_chrX_+_68617918_68617964	0.570782	GLI1..3.p2	BC056376|Mtmr1|53332|myotubularin related protein 1	NM_016985|Mtmr1|53332|myotubularin related protein 1	BC057337|Mtmr1|53332|myotubularin related protein 1	AF073997|Mtmr1|53332|myotubularin related protein 1
mm9_v1_chr7_+_28390872_28390878	0.569717	GLI1..3.p2	BC026151|Akt2|11652|thymoma viral proto-oncogene 2	NM_007434|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr1_-_75475320_75475722	0.568346	GLI1..3.p2	AK160734|Chpf|74241|chondroitin polymerizing factor	AK177663|Chpf|74241|chondroitin polymerizing factor	AK187637|Chpf|74241|chondroitin polymerizing factor	AK190649|Chpf|74241|chondroitin polymerizing factor	BC030889|Chpf|74241|chondroitin polymerizing factor	AK006466|Chpf|74241|chondroitin polymerizing factor	AK155424|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chr4_-_86876328_86876443	0.564001	GLI1..3.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr7_-_117129643_117129675	0.561855	GLI1..3.p2	AK167021|Tmem41b|233724|transmembrane protein 41B	AK166845|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr9_-_79641213_79641236	0.556938	GLI1..3.p2	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr4_+_118928045_118928205	0.556171	GLI1..3.p2	AK143945|Cldn19|242653|claudin 19	NM_153105|Cldn19|242653|claudin 19	AF486651|Cldn19|242653|claudin 19	NM_001038590|Cldn19|242653|claudin 19	AK032743|Cldn19|242653|claudin 19	BC114989|Cldn19|242653|claudin 19	BC115827|Cldn19|242653|claudin 19	AF249889|Cldn19|242653|claudin 19
mm9_v1_chr16_+_96366980_96367038	0.555712	GLI1..3.p2	AK084688|Wrb|71446|tryptophan rich basic protein	AK172079|Wrb|71446|tryptophan rich basic protein	BC031769|Wrb|71446|tryptophan rich basic protein	NM_207301|Wrb|71446|tryptophan rich basic protein	AK021091|Wrb|71446|tryptophan rich basic protein
mm9_v1_chr13_-_55614750_55614802	0.554842	GLI1..3.p2	AK003019|Pdlim7|67399|PDZ and LIM domain 7	BC052698|Pdlim7|67399|PDZ and LIM domain 7	AK142933|Pdlim7|67399|PDZ and LIM domain 7	AK003338|Pdlim7|67399|PDZ and LIM domain 7	AK010141|Pdlim7|67399|PDZ and LIM domain 7	AK128987|Pdlim7|67399|PDZ and LIM domain 7	BC049565|Pdlim7|67399|PDZ and LIM domain 7	AK010339|Pdlim7|67399|PDZ and LIM domain 7	AK033091|Pdlim7|67399|PDZ and LIM domain 7	AK049902|Pdlim7|67399|PDZ and LIM domain 7	AK077998|Pdlim7|67399|PDZ and LIM domain 7	AK167476|Pdlim7|67399|PDZ and LIM domain 7	NM_001114087|Pdlim7|67399|PDZ and LIM domain 7	NM_001114088|Pdlim7|67399|PDZ and LIM domain 7	NM_026131|Pdlim7|67399|PDZ and LIM domain 7
mm9_v1_chr11_-_83276417_83276531	0.554424	GLI1..3.p2	BC137921|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	BC145048|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	BC145049|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AY065653|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AY071828|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AY071829|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	NM_080453|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	NM_172797|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AK087705|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AK151100|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AK051258|Mmp28|118453|matrix metallopeptidase 28 (epilysin)
mm9_v1_chr14_-_52898946_52899069	0.554085	GLI1..3.p2	AK044202|Rab2b|76338|RAB2B, member RAS oncogene family	BC033312|Rab2b|76338|RAB2B, member RAS oncogene family	AK005230|Rab2b|76338|RAB2B, member RAS oncogene family	BC054719|Rab2b|76338|RAB2B, member RAS oncogene family	AK038393|Rab2b|76338|RAB2B, member RAS oncogene family	AK038576|Rab2b|76338|RAB2B, member RAS oncogene family	AK169657|Rab2b|76338|RAB2B, member RAS oncogene family	BC046334|Rab2b|76338|RAB2B, member RAS oncogene family	NM_172601|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr8_+_85913750_85913789	0.553494	GLI1..3.p2	AK019534|Clgn|12745|calmegin	AK034525|Clgn|12745|calmegin	D14117|Clgn|12745|calmegin	D86323|Clgn|12745|calmegin	U08373|Clgn|12745|calmegin	BC050767|Clgn|12745|calmegin	NM_009904|Clgn|12745|calmegin
mm9_v1_chr7_+_133572567_133572631	0.551916	GLI1..3.p2	AK089938|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK144836|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK157832|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2
mm9_v1_chr9_-_45714487_45714524	0.551735	GLI1..3.p2	AK032376|Rnf214|235315|ring finger protein 214
mm9_v1_chr11_+_29592897_29592944	0.549992	GLI1..3.p2	NM_194052|Rtn4|68585|reticulon 4	NM_194053|Rtn4|68585|reticulon 4	NM_194054|Rtn4|68585|reticulon 4
mm9_v1_chr12_+_62624153_62624158	0.548154	GLI1..3.p2	AK162923|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr9_-_102256962_102257026	0.547576	GLI1..3.p2	BC057301|Ephb1|270190|Eph receptor B1	AK135018|Ephb1|270190|Eph receptor B1	AK033966|Ephb1|270190|Eph receptor B1	AK036211|Ephb1|270190|Eph receptor B1	AK082061|Ephb1|270190|Eph receptor B1	AK039530|Ephb1|270190|Eph receptor B1	NM_001168296|Ephb1|270190|Eph receptor B1	NM_173447|Ephb1|270190|Eph receptor B1
mm9_v1_chr19_-_5272972_5273118	0.54575	GLI1..3.p2	AK164770|Pacs1|107975|phosphofurin acidic cluster sorting protein 1	AK171969|Pacs1|107975|phosphofurin acidic cluster sorting protein 1	AK154563|Pacs1|107975|phosphofurin acidic cluster sorting protein 1	BC062886|Pacs1|107975|phosphofurin acidic cluster sorting protein 1	NM_153129|Pacs1|107975|phosphofurin acidic cluster sorting protein 1
mm9_v1_chr3_-_104315750_104315755	0.541618	GLI1..3.p2	AK173030|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr5_+_130620730_130620855	0.540886	GLI1..3.p2	AK162568|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK083583|Kctd7|212919|potassium channel tetramerisation domain containing 7	NM_172509|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK029942|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK034583|Kctd7|212919|potassium channel tetramerisation domain containing 7	AK140606|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC139070|Kctd7|212919|potassium channel tetramerisation domain containing 7	BC141201|Kctd7|212919|potassium channel tetramerisation domain containing 7
mm9_v1_chr4_+_117507993_117508058	0.53821	GLI1..3.p2	BC021828|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm9_v1_chr1_+_169619688_169619905	0.536662	GLI1..3.p2	AK044944|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	NM_033652|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	BC109167|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	BC109168|Lmx1a|110648|LIM homeobox transcription factor 1 alpha	AF226662|Lmx1a|110648|LIM homeobox transcription factor 1 alpha
mm9_v1_chr1_+_91476810_91476856	0.532632	GLI1..3.p2	AK147521|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr5_+_30607907_30607949	0.531723	GLI1..3.p2	AK140154|Gm1060|381738|predicted gene 1060	NM_001033460|Gm1060|381738|predicted gene 1060	BC150863|Gm1060|381738|predicted gene 1060
mm9_v1_chr10_+_127848671_127848731	0.531085	GLI1..3.p2	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr11_-_41995688_41995930	0.531043	GLI1..3.p2	X61430|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	AK039496|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	M86566|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm9_v1_chr4_+_124762378_124762419	0.529598	GLI1..3.p2	NM_027310|Meaf6|70088|MYST/Esa1-associated factor 6	AK009177|Meaf6|70088|MYST/Esa1-associated factor 6	AK012867|Meaf6|70088|MYST/Esa1-associated factor 6	BC108404|Meaf6|70088|MYST/Esa1-associated factor 6	BC061024|Meaf6|70088|MYST/Esa1-associated factor 6
mm9_v1_chr2_-_151458281_151458296	0.526999	GLI1..3.p2	BC072567|Snph|241727|syntaphilin
mm9_v1_chr18_+_37098858_37098971	0.524155	GLI1..3.p2	BC030897|Pcdha2|353234|protocadherin alpha 2	NM_198117|Pcdha2|353234|protocadherin alpha 2	BC141390|Pcdha2|353234|protocadherin alpha 2	AY013760|Pcdha2|353234|protocadherin alpha 2
mm9_v1_chr19_+_4100914_4101127	0.523983	GLI1..3.p2	BC048150|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	BC044893|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1
mm9_v1_chr8_+_119780918_119781056	0.522505	GLI1..3.p2	NM_001163262|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	AK085367|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	BC158118|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr9_+_20447321_20447371	0.521593	GLI1..3.p2	AK154036|Ubl5|66177|ubiquitin-like 5
mm9_v1_chrX_-_45245608_45245760	0.520865	GLI1..3.p2	AK035068|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AK030741|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AK032978|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AK052092|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	BC016071|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	AF325920|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	BC057115|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	NM_053123|Smarca1|93761|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
mm9_v1_chr11_-_120209770_120209811	0.519595	GLI1..3.p2	M21495|Actg1|11465|actin, gamma, cytoplasmic 1	BC099371|Actg1|11465|actin, gamma, cytoplasmic 1	BC003337|Actg1|11465|actin, gamma, cytoplasmic 1	BC018571|Actg1|11465|actin, gamma, cytoplasmic 1	BC021796|Actg1|11465|actin, gamma, cytoplasmic 1	BC023248|Actg1|11465|actin, gamma, cytoplasmic 1	NM_009609|Actg1|11465|actin, gamma, cytoplasmic 1	AF195094|Actg1|11465|actin, gamma, cytoplasmic 1	AK149927|Actg1|11465|actin, gamma, cytoplasmic 1	AK150209|Actg1|11465|actin, gamma, cytoplasmic 1	AK162157|Actg1|11465|actin, gamma, cytoplasmic 1	AK076081|Actg1|11465|actin, gamma, cytoplasmic 1	AK087983|Actg1|11465|actin, gamma, cytoplasmic 1	AK157726|Actg1|11465|actin, gamma, cytoplasmic 1	AK012251|Actg1|11465|actin, gamma, cytoplasmic 1	AK152202|Actg1|11465|actin, gamma, cytoplasmic 1	AK153446|Actg1|11465|actin, gamma, cytoplasmic 1	AK159867|Actg1|11465|actin, gamma, cytoplasmic 1
mm9_v1_chr8_-_127421561_127421610	0.519428	GLI1..3.p2	BC057052|Exoc8|102058|exocyst complex component 8	NM_198103|Exoc8|102058|exocyst complex component 8
mm9_v1_chr9_-_86589782_86589994	0.518727	GLI1..3.p2	M26756|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC094028|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC080660|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC003287|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	AK004980|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	AK077968|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	J02652|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	BC011081|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic	NM_008615|Me1|17436|malic enzyme 1, NADP(+)-dependent, cytosolic
mm9_v1_chr11_-_108205240_108205247	0.516734	GLI1..3.p2	M25811|Prkca|18750|protein kinase C, alpha
mm9_v1_chr15_+_7079540_7079643	0.5164	GLI1..3.p2	AK155524|Lifr|16880|leukemia inhibitory factor receptor	AK145864|Lifr|16880|leukemia inhibitory factor receptor	NM_001113386|Lifr|16880|leukemia inhibitory factor receptor
mm9_v1_chr13_+_34967499_34967514	0.516026	GLI1..3.p2	AB516304|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr15_-_101966611_101966682	0.515909	GLI1..3.p2	BC048820|Spryd3|223918|SPRY domain containing 3	NM_001033277|Spryd3|223918|SPRY domain containing 3	AK146689|Spryd3|223918|SPRY domain containing 3
mm9_v1_chr1_-_74552346_74552441	0.515342	GLI1..3.p2	BC114208|Usp37|319651|ubiquitin specific peptidase 37	AK035640|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr11_-_102157904_102158007	0.514484	GLI1..3.p2	NM_001098836|Atxn7l3|217218|ataxin 7-like 3	NM_001098837|Atxn7l3|217218|ataxin 7-like 3	AK090368|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr6_+_51382668_51382761	0.513299	GLI1..3.p2	AB013852|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	NM_010903|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK133935|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK136980|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK137881|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK017278|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK020550|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	AK153612|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3	BC005416|Nfe2l3|18025|nuclear factor, erythroid derived 2, like 3
mm9_v1_chr1_+_163072784_163072870	0.512608	GLI1..3.p2	AK016757|Ankrd45|73844|ankyrin repeat domain 45	NM_028664|Ankrd45|73844|ankyrin repeat domain 45	BC049713|Ankrd45|73844|ankyrin repeat domain 45
mm9_v1_chr8_+_129587894_129588193	0.512044	GLI1..3.p2	BC090616|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_001122850|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	NM_033620|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK052416|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053762|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053563|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK137690|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AK053576|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	AY026057|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC141187|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)	BC145508|Pard3|93742|par-3 (partitioning defective 3) homolog (C. elegans)
mm9_v1_chr5_-_36071673_36071684	0.511216	GLI1..3.p2	AK171242|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK155330|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK171209|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1
mm9_v1_chr6_-_98978185_98978383	0.51099	GLI1..3.p2	AK077062|Foxp1|108655|forkhead box P1	AK144920|Foxp1|108655|forkhead box P1	NM_001197322|Foxp1|108655|forkhead box P1
mm9_v1_chr2_-_113878535_113878550	0.5087	GLI1..3.p2	BC062138|Actc1|11464|actin, alpha, cardiac muscle 1	AK014303|Actc1|11464|actin, alpha, cardiac muscle 1	AK146496|Actc1|11464|actin, alpha, cardiac muscle 1	AK146899|Actc1|11464|actin, alpha, cardiac muscle 1	AK168637|Actc1|11464|actin, alpha, cardiac muscle 1	AK168661|Actc1|11464|actin, alpha, cardiac muscle 1	AK168831|Actc1|11464|actin, alpha, cardiac muscle 1	AK169161|Actc1|11464|actin, alpha, cardiac muscle 1	AK169165|Actc1|11464|actin, alpha, cardiac muscle 1	BC100600|Actc1|11464|actin, alpha, cardiac muscle 1	NM_009608|Actc1|11464|actin, alpha, cardiac muscle 1	AK014307|Actc1|11464|actin, alpha, cardiac muscle 1
mm9_v1_chr5_+_34326081_34326346	0.506049	GLI1..3.p2	BC147444|Gm1673|381633|predicted gene 1673	BC147468|Gm1673|381633|predicted gene 1673	BC048625|Gm1673|381633|predicted gene 1673	AK141724|Gm1673|381633|predicted gene 1673	NM_001033458|Gm1673|381633|predicted gene 1673	BC100514|Gm1673|381633|predicted gene 1673	BC055794|Gm1673|381633|predicted gene 1673	AK131594|Gm1673|381633|predicted gene 1673
mm9_v1_chr10_-_79502388_79502430	0.506024	GLI1..3.p2	BC026842|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK015823|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	BC045521|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	NM_025554|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E	AK010567|Polr2e|66420|polymerase (RNA) II (DNA directed) polypeptide E
mm9_v1_chr18_+_45719101_45719122	0.504678	GLI1..3.p2	AK149082|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK039033|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr15_-_95358674_95358735	0.502598	GLI1..3.p2	U59230|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr2_-_64860728_64860875	0.500319	GLI1..3.p2	BC138581|Grb14|50915|growth factor receptor bound protein 14	BC145913|Grb14|50915|growth factor receptor bound protein 14	AF155647|Grb14|50915|growth factor receptor bound protein 14	NM_016719|Grb14|50915|growth factor receptor bound protein 14	AK147041|Grb14|50915|growth factor receptor bound protein 14	AK010849|Grb14|50915|growth factor receptor bound protein 14	AK010903|Grb14|50915|growth factor receptor bound protein 14
mm9_v1_chr9_+_40494347_40494411	0.500026	GLI1..3.p2	AY326421|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene
mm9_v1_chr10_+_17443024_17443226	0.499441	GLI1..3.p2	AK131664|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	AK133791|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	NM_010828|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	BC057126|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	U86445|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	Y15163|Cited2|17684|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm9_v1_chr5_-_115750998_115751012	0.498986	GLI1..3.p2	NM_019682|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr19_+_5568016_5568024	0.498675	GLI1..3.p2	AK171710|Gm962|381201|predicted gene 962
mm9_v1_chr17_-_34167827_34167929	0.497369	GLI1..3.p2	AK197290|Slc39a7|14977|solute carrier family 39 (zinc transporter), member 7
mm9_v1_chr2_+_130732250_130732274	0.497364	GLI1..3.p2	BC141054|Atrn|11990|attractin	AF119821|Atrn|11990|attractin
mm9_v1_chr1_-_99666564_99666675	0.496163	GLI1..3.p2	AK087712|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK149804|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK129140|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	AK166095|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2	NM_173760|Ppip5k2|227399|diphosphoinositol pentakisphosphate kinase 2
mm9_v1_chr2_-_53937785_53937964	0.493308	GLI1..3.p2	BC030065|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK014769|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AB043586|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	AK010465|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate	NM_023396|Rprm|67874|reprimo, TP53 dependent G2 arrest mediator candidate
mm9_v1_chr3_-_104315778_104315782	0.492883	GLI1..3.p2	AK036116|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	NM_001025067|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr2_-_180869947_180869970	0.490072	GLI1..3.p2	AK161558|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2
mm9_v1_chr17_-_85189859_85189891	0.48921	GLI1..3.p2	BC059862|Lrpprc|72416|leucine-rich PPR-motif containing
mm9_v1_chr17_+_70318707_70318748	0.48894	GLI1..3.p2	AK031404|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK043418|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK043683|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK031410|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK035763|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr11_+_116938138_116938176	0.48451	GLI1..3.p2	BC037520|2810008D09Rik|76972|RIKEN cDNA 2810008D09 gene
mm9_v1_chr12_+_85455277_85455306	0.482839	GLI1..3.p2	NM_028821|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr12_+_104626888_104626975	0.480347	GLI1..3.p2	NM_026580|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK076336|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	NM_001177841|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC049551|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK016449|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK160505|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK019830|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006346|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006469|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	AK006054|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2	BC052409|Otub2|68149|OTU domain, ubiquitin aldehyde binding 2
mm9_v1_chr15_-_95358578_95358610	0.478952	GLI1..3.p2	AK048913|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr15_-_79233664_79233756	0.478526	GLI1..3.p2	AK048138|Tmem184b|223693|transmembrane protein 184b	AK028196|Tmem184b|223693|transmembrane protein 184b	AK029129|Tmem184b|223693|transmembrane protein 184b	AK170086|Tmem184b|223693|transmembrane protein 184b	AK149366|Tmem184b|223693|transmembrane protein 184b	AK158789|Tmem184b|223693|transmembrane protein 184b	NM_172608|Tmem184b|223693|transmembrane protein 184b
mm9_v1_chr8_-_86118291_86118339	0.47784	GLI1..3.p2	AK179321|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK010513|Tecr|106529|trans-2,3-enoyl-CoA reductase	BC094046|Tecr|106529|trans-2,3-enoyl-CoA reductase
mm9_v1_chr13_-_53472732_53472776	0.477757	GLI1..3.p2	AK084391|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AF003823|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK089030|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK053207|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK028713|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1	AK161140|Sptlc1|268656|serine palmitoyltransferase, long chain base subunit 1
mm9_v1_chr7_+_30088984_30089023	0.476757	GLI1..3.p2	BC052348|Dpf1|29861|D4, zinc and double PHD fingers family 1	NM_013874|Dpf1|29861|D4, zinc and double PHD fingers family 1	U48238|Dpf1|29861|D4, zinc and double PHD fingers family 1
mm9_v1_chr13_-_9764376_9764487	0.476691	GLI1..3.p2	BC022945|Zmynd11|66505|zinc finger, MYND domain containing 11	AK077732|Zmynd11|66505|zinc finger, MYND domain containing 11	NM_144516|Zmynd11|66505|zinc finger, MYND domain containing 11
mm9_v1_chrX_+_132373572_132373652	0.476608	GLI1..3.p2	NM_001163015|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163016|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163017|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK030638|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK081764|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117924|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117923|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2
mm9_v1_chr7_-_118923483_118923501	0.474842	GLI1..3.p2	BC024988|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	NM_173739|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	AK084671|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4
mm9_v1_chr16_-_52453104_52453136	0.474749	GLI1..3.p2	AK053201|Alcam|11658|activated leukocyte cell adhesion molecule	AK030851|Alcam|11658|activated leukocyte cell adhesion molecule	NM_009655|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr5_+_130924661_130924722	0.473588	GLI1..3.p2	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chrX_+_8469507_8469585	0.472304	GLI1..3.p2	AK046767|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene	BC055780|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr2_+_158436493_158436936	0.471668	GLI1..3.p2	AY578289|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	NM_009508|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	BC052020|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163754|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK140468|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163661|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AJ001598|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1
mm9_v1_chr10_+_105011586_105011626	0.469855	GLI1..3.p2	AK034146|9330159K06|327812|hypothetical protein 9330159K06
mm9_v1_chr7_+_64846558_64846592	0.468095	GLI1..3.p2	U14420|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK039070|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK147247|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr4_+_12016499_12016564	0.463985	GLI1..3.p2	NM_198957|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	AK169895|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene	BC080741|C430048L16Rik|77604|RIKEN cDNA C430048L16 gene
mm9_v1_chr10_-_89148966_89149057	0.463857	GLI1..3.p2	AK052108|Scyl2|213326|SCY1-like 2 (S. cerevisiae)	AK139761|Scyl2|213326|SCY1-like 2 (S. cerevisiae)	AK167276|Scyl2|213326|SCY1-like 2 (S. cerevisiae)	BC042443|Scyl2|213326|SCY1-like 2 (S. cerevisiae)	NM_198021|Scyl2|213326|SCY1-like 2 (S. cerevisiae)
mm9_v1_chr11_-_102417457_102417523	0.463242	GLI1..3.p2	AK135410|Gpatch8|237943|G patch domain containing 8	NM_001159492|Gpatch8|237943|G patch domain containing 8
mm9_v1_chr6_-_113481546_113481673	0.457873	GLI1..3.p2	AK020058|Tmem111|66087|transmembrane protein 111	AK046264|Tmem111|66087|transmembrane protein 111	BC004641|Tmem111|66087|transmembrane protein 111	AK075595|Tmem111|66087|transmembrane protein 111	NM_175101|Tmem111|66087|transmembrane protein 111	AK164779|Tmem111|66087|transmembrane protein 111
mm9_v1_chr6_-_91757386_91757427	0.456765	GLI1..3.p2	NM_001159507|Grip2|243547|glutamate receptor interacting protein 2
mm9_v1_chr1_-_133034721_133034864	0.455693	GLI1..3.p2	AK161495|Dyrk3|226419|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	BC006704|Dyrk3|226419|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	NM_145508|Dyrk3|226419|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
mm9_v1_chr2_+_71819264_71819343	0.452985	GLI1..3.p2	AK220281|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AB021132|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK161934|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AK017479|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	AF115480|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	BC139822|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4	NM_019688|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr5_-_122043598_122043599	0.45179	GLI1..3.p2	AK042326|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK150250|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial
mm9_v1_chr15_-_94234743_94234766	0.451762	GLI1..3.p2	AK090358|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm9_v1_chr15_+_99125666_99125690	0.451761	GLI1..3.p2	BC058389|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	BC082994|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK140075|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK164947|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr1_+_34636537_34636571	0.451339	GLI1..3.p2	NM_213727|Fam123c|211383|family with sequence similarity 123, member C	BC070435|Fam123c|211383|family with sequence similarity 123, member C
mm9_v1_chr4_-_118966829_118966902	0.451309	GLI1..3.p2	AK188049|Ybx1|22608|Y box protein 1	AF038994|Ybx1|22608|Y box protein 1
mm9_v1_chr5_+_76958331_76958438	0.450879	GLI1..3.p2	BC064811|Exoc1|69940|exocyst complex component 1	NM_027270|Exoc1|69940|exocyst complex component 1	AK042620|Exoc1|69940|exocyst complex component 1	AK155980|Exoc1|69940|exocyst complex component 1	BC087543|Exoc1|69940|exocyst complex component 1	BC024678|Exoc1|69940|exocyst complex component 1
mm9_v1_chr9_+_74918821_74918973	0.449809	GLI1..3.p2	AK134367|Myo5a|17918|myosin VA
mm9_v1_chr14_-_76956445_76956583	0.445566	GLI1..3.p2	AY425619|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	NM_001160326|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	AK012850|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr9_-_113935832_113935880	0.445377	GLI1..3.p2	AK013142|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK089994|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145665|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC145998|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK045742|Fbxl2|72179|F-box and leucine-rich repeat protein 2	BC096582|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK141177|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK163472|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK044693|Fbxl2|72179|F-box and leucine-rich repeat protein 2	AK039010|Fbxl2|72179|F-box and leucine-rich repeat protein 2	NM_178624|Fbxl2|72179|F-box and leucine-rich repeat protein 2
mm9_v1_chr11_-_102417449_102417456	0.443025	GLI1..3.p2	AK084888|Gpatch8|237943|G patch domain containing 8
mm9_v1_chrX_-_71070284_71070317	0.442747	GLI1..3.p2	AK046101|Pdzd4|245469|PDZ domain containing 4	NM_001029868|Pdzd4|245469|PDZ domain containing 4
mm9_v1_chr9_+_108362848_108362907	0.441867	GLI1..3.p2	NM_133744|Ccdc71|72454|coiled-coil domain containing 71	AK085544|Ccdc71|72454|coiled-coil domain containing 71	AK079333|Ccdc71|72454|coiled-coil domain containing 71	AK011229|Ccdc71|72454|coiled-coil domain containing 71	AK044601|Ccdc71|72454|coiled-coil domain containing 71	AK086560|Ccdc71|72454|coiled-coil domain containing 71	AK149878|Ccdc71|72454|coiled-coil domain containing 71	AK136982|Ccdc71|72454|coiled-coil domain containing 71	BC018518|Ccdc71|72454|coiled-coil domain containing 71
mm9_v1_chr11_+_109511803_109511871	0.44084	GLI1..3.p2	AK049832|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK150427|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK146380|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK151124|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	AK153227|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha	BC005697|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha
mm9_v1_chrX_-_98615096_98615252	0.440063	GLI1..3.p2	BC042699|Zmym3|56364|zinc finger, MYM-type 3	BC050131|Zmym3|56364|zinc finger, MYM-type 3	AK033470|Zmym3|56364|zinc finger, MYM-type 3	BC108366|Zmym3|56364|zinc finger, MYM-type 3	NM_001177985|Zmym3|56364|zinc finger, MYM-type 3	NM_001177986|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr16_-_20621287_20621552	0.440026	GLI1..3.p2	AK013788|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147550|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147736|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147745|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC157896|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	NM_028420|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2
mm9_v1_chr15_-_94234778_94234782	0.43915	GLI1..3.p2	AK145288|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_001164785|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_001164786|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_177431|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm9_v1_chr10_-_126700387_126700418	0.437695	GLI1..3.p2	AK220479|Kif5a|16572|kinesin family member 5A	AK140769|Kif5a|16572|kinesin family member 5A	NM_001039000|Kif5a|16572|kinesin family member 5A	NM_008447|Kif5a|16572|kinesin family member 5A
mm9_v1_chr7_-_52625929_52625989	0.436562	GLI1..3.p2	AF173082|Lin7b|22342|lin-7 homolog B (C. elegans)	NM_011698|Lin7b|22342|lin-7 homolog B (C. elegans)	AF087694|Lin7b|22342|lin-7 homolog B (C. elegans)	AK019299|Lin7b|22342|lin-7 homolog B (C. elegans)	BC031780|Lin7b|22342|lin-7 homolog B (C. elegans)
mm9_v1_chr3_+_94964364_94964444	0.435693	GLI1..3.p2	AK165085|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	BC083186|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	BC059007|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	BC051979|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	AK031131|Sema6c|20360|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
mm9_v1_chr12_-_55896488_55896574	0.43271	GLI1..3.p2	BC025911|Snx6|72183|sorting nexin 6
mm9_v1_chr1_+_74901489_74901677	0.432623	GLI1..3.p2	NM_009872|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100712|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC103550|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100714|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100715|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)
mm9_v1_chr12_+_78339802_78339856	0.429757	GLI1..3.p2	AK157989|Fut8|53618|fucosyltransferase 8	AK133547|Fut8|53618|fucosyltransferase 8
mm9_v1_chr14_+_28242002_28242052	0.42873	GLI1..3.p2	AK016751|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	AK044563|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_001114879|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_028945|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed
mm9_v1_chr2_-_63022140_63022343	0.42854	GLI1..3.p2	AJ291608|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK052366|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK043768|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK034003|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_133207|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm9_v1_chr2_+_106533615_106533705	0.42704	GLI1..3.p2	AK161666|Mpped2|77015|metallophosphoesterase domain containing 2	NM_001143683|Mpped2|77015|metallophosphoesterase domain containing 2	BC020182|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr1_+_75476106_75476188	0.425275	GLI1..3.p2	NM_177056|Tmem198|319998|transmembrane protein 198	BC059868|Tmem198|319998|transmembrane protein 198	AK038957|Tmem198|319998|transmembrane protein 198	AK082334|Tmem198|319998|transmembrane protein 198
mm9_v1_chr17_-_79234656_79234721	0.422909	GLI1..3.p2	BC086652|Heatr5b|320473|HEAT repeat containing 5B	AK079542|Heatr5b|320473|HEAT repeat containing 5B	AK146166|Heatr5b|320473|HEAT repeat containing 5B	AK053037|Heatr5b|320473|HEAT repeat containing 5B	AK158478|Heatr5b|320473|HEAT repeat containing 5B	NM_001081179|Heatr5b|320473|HEAT repeat containing 5B
mm9_v1_chr19_+_55390850_55390853	0.41813	GLI1..3.p2	AK004751|Vti1a|53611|vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
mm9_v1_chr13_-_48608762_48608790	0.417972	GLI1..3.p2	BC060222|Zfp169|67911|zinc finger protein 169	NM_001164575|Zfp169|67911|zinc finger protein 169
mm9_v1_chr8_-_86118344_86118395	0.416803	GLI1..3.p2	AK013558|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK002384|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK010984|Tecr|106529|trans-2,3-enoyl-CoA reductase	BC019984|Tecr|106529|trans-2,3-enoyl-CoA reductase	AK020708|Tecr|106529|trans-2,3-enoyl-CoA reductase	NM_027179|Tecr|106529|trans-2,3-enoyl-CoA reductase	NM_134118|Tecr|106529|trans-2,3-enoyl-CoA reductase
mm9_v1_chr7_+_133415982_133416132	0.416188	GLI1..3.p2	BC031759|Sbk1|104175|SH3-binding kinase 1	NM_145587|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr9_-_54349409_54349432	0.41617	GLI1..3.p2	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr16_+_18836666_18836685	0.415831	GLI1..3.p2	AK160192|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	NM_001033164|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	AK010889|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene	AK153794|2510002D24Rik|72307|RIKEN cDNA 2510002D24 gene
mm9_v1_chr13_-_95055235_95055506	0.415122	GLI1..3.p2	BC034283|Scamp1|107767|secretory carrier membrane protein 1	NM_029153|Scamp1|107767|secretory carrier membrane protein 1	AK135058|Scamp1|107767|secretory carrier membrane protein 1	AK154671|Scamp1|107767|secretory carrier membrane protein 1	AK170343|Scamp1|107767|secretory carrier membrane protein 1
mm9_v1_chr8_+_87583954_87584056	0.413357	GLI1..3.p2	AK156709|Fbxw9|68628|F-box and WD-40 domain protein 9	NM_026791|Fbxw9|68628|F-box and WD-40 domain protein 9	BC043658|Fbxw9|68628|F-box and WD-40 domain protein 9
mm9_v1_chr6_-_89312545_89312689	0.411695	GLI1..3.p2	D86948|Plxna1|18844|plexin A1	NM_008881|Plxna1|18844|plexin A1
mm9_v1_chr3_+_146515330_146515360	0.41067	GLI1..3.p2	NM_027594|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr5_+_111308801_111308858	0.410561	GLI1..3.p2	NM_024477|Ttc28|209683|tetratricopeptide repeat domain 28	AK009368|Ttc28|209683|tetratricopeptide repeat domain 28
mm9_v1_chr3_+_96049419_96049503	0.410155	GLI1..3.p2	BC089519|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147778|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147781|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK002725|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK006728|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_013549|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC010564|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC053966|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC062255|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC080809|Hist2h3c1|15077|histone cluster 2, H3c1	Z30940|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_178212|Hist2h2aa2|319192|histone cluster 2, H2aa2
mm9_v1_chr5_-_8622882_8622951	0.409913	GLI1..3.p2	BC058808|Rundc3b|242819|RUN domain containing 3B	NM_198620|Rundc3b|242819|RUN domain containing 3B
mm9_v1_chr19_-_18706181_18706214	0.409772	GLI1..3.p2	BC060986|Ostf1|20409|osteoclast stimulating factor 1
mm9_v1_chr9_-_21875603_21875617	0.409652	GLI1..3.p2	AK089104|Zfp653|319601|zinc finger protein 653
mm9_v1_chr11_+_97660946_97661134	0.408994	GLI1..3.p2	X96702|Lasp1|16796|LIM and SH3 protein 1	AK148858|Lasp1|16796|LIM and SH3 protein 1	AK034404|Lasp1|16796|LIM and SH3 protein 1	AK049199|Lasp1|16796|LIM and SH3 protein 1	AK078445|Lasp1|16796|LIM and SH3 protein 1	AK168521|Lasp1|16796|LIM and SH3 protein 1	AK169381|Lasp1|16796|LIM and SH3 protein 1	NM_010688|Lasp1|16796|LIM and SH3 protein 1	AK154656|Lasp1|16796|LIM and SH3 protein 1	BC010840|Lasp1|16796|LIM and SH3 protein 1	X96973|Lasp1|16796|LIM and SH3 protein 1	CT010288|Lasp1|16796|LIM and SH3 protein 1
mm9_v1_chr2_+_91570304_91570382	0.40806	GLI1..3.p2	AK148887|Ambra1|228361|autophagy/beclin 1 regulator 1	AK084557|Ambra1|228361|autophagy/beclin 1 regulator 1	AK155513|Ambra1|228361|autophagy/beclin 1 regulator 1	AK037516|Ambra1|228361|autophagy/beclin 1 regulator 1	AK083596|Ambra1|228361|autophagy/beclin 1 regulator 1	AK169280|Ambra1|228361|autophagy/beclin 1 regulator 1	BC054082|Ambra1|228361|autophagy/beclin 1 regulator 1	BC032293|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr12_+_62624880_62624934	0.407298	GLI1..3.p2	AK220546|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr4_+_57447340_57447346	0.407084	GLI1..3.p2	AK133666|Palm2|242481|paralemmin 2
mm9_v1_chr8_-_107788478_107788524	0.406263	GLI1..3.p2	BC132607|Tradd|71609|TNFRSF1A-associated via death domain	BC138642|Tradd|71609|TNFRSF1A-associated via death domain	AK156540|Tradd|71609|TNFRSF1A-associated via death domain	NM_001033161|Tradd|71609|TNFRSF1A-associated via death domain	AK018592|Tradd|71609|TNFRSF1A-associated via death domain
mm9_v1_chr13_-_21842373_21842421	0.404471	GLI1..3.p2	BC119612|Hist1h4k|319160|histone cluster 1, H4k	NM_178211|Hist1h4k|319160|histone cluster 1, H4k	BC096767|Hist1h4k|319160|histone cluster 1, H4k	AK139521|Hist1h4k|319160|histone cluster 1, H4k	BC117010|Hist1h4k|319160|histone cluster 1, H4k	BC117012|Hist1h4k|319160|histone cluster 1, H4k
mm9_v1_chr11_-_50024275_50024312	0.403339	GLI1..3.p2	U57413|Sqstm1|18412|sequestosome 1	NM_011018|Sqstm1|18412|sequestosome 1	U40930|Sqstm1|18412|sequestosome 1
mm9_v1_chr17_+_29686744_29686746	0.402644	GLI1..3.p2	BC045600|Tbc1d22b|381085|TBC1 domain family, member 22B	NM_198647|Tbc1d22b|381085|TBC1 domain family, member 22B
mm9_v1_chr2_+_91762334_91762347	0.401586	GLI1..3.p2	NM_007699|Chrm4|12672|cholinergic receptor, muscarinic 4
mm9_v1_chr6_-_3713622_3713622	0.400215	GLI1..3.p2	AK133983|Calcr|12311|calcitonin receptor	NM_001042725|Calcr|12311|calcitonin receptor
mm9_v1_chr1_-_136131981_136132033	0.400032	GLI1..3.p2	NM_001008533|Adora1|11539|adenosine A1 receptor	AK038774|Adora1|11539|adenosine A1 receptor	NM_001039510|Adora1|11539|adenosine A1 receptor	AK134532|Adora1|11539|adenosine A1 receptor
mm9_v1_chr5_+_3803163_3803177	0.399666	GLI1..3.p2	NM_001170552|Krit1|79264|KRIT1, ankyrin repeat containing	NM_030675|Krit1|79264|KRIT1, ankyrin repeat containing
mm9_v1_chr5_+_20692068_20692169	0.397707	GLI1..3.p2	AK137494|Pion|212167|pigeon homolog (Drosophila)	BC043137|Pion|212167|pigeon homolog (Drosophila)	BC059054|Pion|212167|pigeon homolog (Drosophila)	NM_175437|Pion|212167|pigeon homolog (Drosophila)	AK033694|Pion|212167|pigeon homolog (Drosophila)	AK039306|Pion|212167|pigeon homolog (Drosophila)	AK080244|Pion|212167|pigeon homolog (Drosophila)	AK170515|Pion|212167|pigeon homolog (Drosophila)	BC022737|Pion|212167|pigeon homolog (Drosophila)	BC144952|Pion|212167|pigeon homolog (Drosophila)	BC144953|Pion|212167|pigeon homolog (Drosophila)
mm9_v1_chr17_-_48061354_48061450	0.397014	GLI1..3.p2	BC043702|Foxp4|74123|forkhead box P4	AY135029|Foxp4|74123|forkhead box P4	BC052407|Foxp4|74123|forkhead box P4	AK004693|Foxp4|74123|forkhead box P4	AB052766|Foxp4|74123|forkhead box P4	BC023368|Foxp4|74123|forkhead box P4	AK143194|Foxp4|74123|forkhead box P4
mm9_v1_chrX_+_71550301_71550377	0.395814	GLI1..3.p2	NM_010273|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr9_-_83699706_83699913	0.395034	GLI1..3.p2	AF277093|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK029065|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	BC037030|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_001145974|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK030666|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_148941|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
mm9_v1_chr5_-_133018212_133018273	0.39333	GLI1..3.p2	BC096021|Auts2|319974|autism susceptibility candidate 2	NM_177047|Auts2|319974|autism susceptibility candidate 2	BC151031|Auts2|319974|autism susceptibility candidate 2	BC151047|Auts2|319974|autism susceptibility candidate 2	AK052418|Auts2|319974|autism susceptibility candidate 2
mm9_v1_chr16_+_18777032_18777088	0.393292	GLI1..3.p2	U82758|Cldn5|12741|claudin 5	AF087823|Cldn5|12741|claudin 5
mm9_v1_chr3_-_107820766_107820890	0.392828	GLI1..3.p2	J04632|Gstm1|14862|glutathione S-transferase, mu 1	NM_010358|Gstm1|14862|glutathione S-transferase, mu 1
mm9_v1_chr12_+_78339999_78340029	0.391842	GLI1..3.p2	AK048520|Fut8|53618|fucosyltransferase 8	NM_016893|Fut8|53618|fucosyltransferase 8	AK163494|Fut8|53618|fucosyltransferase 8
mm9_v1_chr9_+_121275947_121276133	0.391676	GLI1..3.p2	NM_175114|Trak1|67095|trafficking protein, kinesin binding 1	BC046285|Trak1|67095|trafficking protein, kinesin binding 1	BC058971|Trak1|67095|trafficking protein, kinesin binding 1
mm9_v1_chr16_-_30550494_30550593	0.389188	GLI1..3.p2	BC080307|Tmem44|224090|transmembrane protein 44
mm9_v1_chr1_+_87942437_87942543	0.387919	GLI1..3.p2	BC137675|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	BC144821|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	NM_001144992|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	NM_001144993|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene
mm9_v1_chr12_-_25780932_25780960	0.387604	GLI1..3.p2	BC006921|Id2|15902|inhibitor of DNA binding 2	BC053699|Id2|15902|inhibitor of DNA binding 2	M69293|Id2|15902|inhibitor of DNA binding 2	AK013239|Id2|15902|inhibitor of DNA binding 2	AK013378|Id2|15902|inhibitor of DNA binding 2	AK003222|Id2|15902|inhibitor of DNA binding 2	AK146346|Id2|15902|inhibitor of DNA binding 2	AK135547|Id2|15902|inhibitor of DNA binding 2	NM_010496|Id2|15902|inhibitor of DNA binding 2	AK146606|Id2|15902|inhibitor of DNA binding 2
mm9_v1_chr17_+_34324496_34324509	0.384255	GLI1..3.p2	AK153890|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	AK166046|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	AK167485|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	NM_001161730|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	NM_013683|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr4_-_86876311_86876327	0.38378	GLI1..3.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr3_-_129763648_129763693	0.383418	GLI1..3.p2	BC057355|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr17_-_80879792_80879792	0.38312	GLI1..3.p2	AK140310|Sos1|20662|son of sevenless homolog 1 (Drosophila)	NM_009231|Sos1|20662|son of sevenless homolog 1 (Drosophila)
mm9_v1_chr9_-_54349377_54349403	0.383041	GLI1..3.p2	AK032099|Dmxl2|235380|Dmx-like 2
mm9_v1_chr10_-_128082881_128083048	0.38257	GLI1..3.p2	AK089522|Ikzf4|22781|IKAROS family zinc finger 4	AK170453|Ikzf4|22781|IKAROS family zinc finger 4	NM_011772|Ikzf4|22781|IKAROS family zinc finger 4
mm9_v1_chr2_+_145686377_145686454	0.381645	GLI1..3.p2	AK014548|Rin2|74030|Ras and Rab interactor 2	AK040763|Rin2|74030|Ras and Rab interactor 2	AK152025|Rin2|74030|Ras and Rab interactor 2	BC005529|Rin2|74030|Ras and Rab interactor 2	AK154421|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr9_+_69137659_69137691	0.380972	GLI1..3.p2	Z82994|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chrX_-_153929935_153930011	0.380922	GLI1..3.p2	AK017775|Sms|20603|spermine synthase	Y09419|Sms|20603|spermine synthase	BC046623|Sms|20603|spermine synthase	AF031486|Sms|20603|spermine synthase	AK049787|Sms|20603|spermine synthase	AK160637|Sms|20603|spermine synthase	AK149929|Sms|20603|spermine synthase	AK002687|Sms|20603|spermine synthase	AK049780|Sms|20603|spermine synthase	AK136798|Sms|20603|spermine synthase	AK011542|Sms|20603|spermine synthase	AK160659|Sms|20603|spermine synthase	NM_009214|Sms|20603|spermine synthase	AK166665|Sms|20603|spermine synthase
mm9_v1_chr2_+_27020999_27021026	0.380199	GLI1..3.p2	BC141022|Dbh|13166|dopamine beta hydroxylase	BC171949|Dbh|13166|dopamine beta hydroxylase	AK132245|Dbh|13166|dopamine beta hydroxylase	NM_138942|Dbh|13166|dopamine beta hydroxylase
mm9_v1_chr4_-_128798939_128798983	0.379641	GLI1..3.p2	NM_001130419|Hpca|15444|hippocalcin
mm9_v1_chr12_+_89599244_89599334	0.379327	GLI1..3.p2	AK050868|Adck1|72113|aarF domain containing kinase 1	NM_028105|Adck1|72113|aarF domain containing kinase 1	AK044573|Adck1|72113|aarF domain containing kinase 1	BC010539|Adck1|72113|aarF domain containing kinase 1
mm9_v1_chr2_+_32143820_32143845	0.379277	GLI1..3.p2	AK220509|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr2_-_104552275_104552329	0.376572	GLI1..3.p2	AK082024|Tcp11l1|320554|t-complex 11 like 1	NM_177190|Tcp11l1|320554|t-complex 11 like 1	AK047525|Tcp11l1|320554|t-complex 11 like 1
mm9_v1_chr17_+_32673502_32673573	0.374552	GLI1..3.p2	AK146232|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	AK078557|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	AK083886|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	BC026539|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	AF233646|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16	NM_024442|Cyp4f16|70101|cytochrome P450, family 4, subfamily f, polypeptide 16
mm9_v1_chrX_+_58962671_58962790	0.374352	GLI1..3.p2	AK137057|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	BC052689|Ldoc1|434784|leucine zipper, down-regulated in cancer 1	NM_001018087|Ldoc1|434784|leucine zipper, down-regulated in cancer 1
mm9_v1_chr9_-_108480927_108481054	0.373453	GLI1..3.p2	BC054367|Wdr6|83669|WD repeat domain 6	AK163752|Wdr6|83669|WD repeat domain 6	AK052235|Wdr6|83669|WD repeat domain 6	AK146617|Wdr6|83669|WD repeat domain 6	AK165935|Wdr6|83669|WD repeat domain 6	AK046119|Wdr6|83669|WD repeat domain 6	AK037181|Wdr6|83669|WD repeat domain 6	AK166265|Wdr6|83669|WD repeat domain 6	AF348591|Wdr6|83669|WD repeat domain 6	BC050894|Wdr6|83669|WD repeat domain 6	NM_031392|Wdr6|83669|WD repeat domain 6	AK169357|Wdr6|83669|WD repeat domain 6
mm9_v1_chr5_-_23953594_23953663	0.373353	GLI1..3.p2	AY603379|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AK008109|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	BC019547|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	AB030183|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1	NM_022418|Tmub1|64295|transmembrane and ubiquitin-like domain containing 1
mm9_v1_chr11_-_115397455_115397592	0.372102	GLI1..3.p2	BC083326|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	AK085238|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	BC017522|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	BC095930|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	L79948|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	AK132213|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	AK012619|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	NM_133354|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	AK167308|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	AK160404|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)	AK160418|Sumo2|170930|SMT3 suppressor of mif two 3 homolog 2 (yeast)
mm9_v1_chr1_+_75502181_75502246	0.370362	GLI1..3.p2	AK080818|Obsl1|98733|obscurin-like 1
mm9_v1_chr12_+_33832550_33832590	0.36722	GLI1..3.p2	NM_028139|Atxn7l1|380753|ataxin 7-like 1
mm9_v1_chrX_-_20527674_20527737	0.364799	GLI1..3.p2	BC054474|Elk1|13712|ELK1, member of ETS oncogene family	AK132354|Elk1|13712|ELK1, member of ETS oncogene family	NM_007922|Elk1|13712|ELK1, member of ETS oncogene family	AK082260|Elk1|13712|ELK1, member of ETS oncogene family
mm9_v1_chr18_-_68459753_68459929	0.359425	GLI1..3.p2	BC038695|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	BC095936|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	AK159319|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	AK142190|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	AK147662|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	AK034980|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	AK162396|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	AK044238|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	AK049567|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene
mm9_v1_chr5_-_122043586_122043597	0.3593	GLI1..3.p2	AK146286|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK150233|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK043506|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK160060|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK035145|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK078626|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK163452|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	U07235|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial
mm9_v1_chr15_+_100592177_100592343	0.359204	GLI1..3.p2	AK034237|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	NM_021530|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK083945|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK050563|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK039404|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	BC030388|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AF224508|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8	AK173014|Slc4a8|59033|solute carrier family 4 (anion exchanger), member 8
mm9_v1_chr1_+_176019168_176019170	0.358625	GLI1..3.p2	NM_146722|Olfr429|258717|olfactory receptor 429	BC127973|Olfr429|258717|olfactory receptor 429
mm9_v1_chr13_-_48608795_48608824	0.358216	GLI1..3.p2	AK162962|Zfp169|67911|zinc finger protein 169	AK086737|Zfp169|67911|zinc finger protein 169	NM_001164576|Zfp169|67911|zinc finger protein 169	NM_026450|Zfp169|67911|zinc finger protein 169
mm9_v1_chr4_-_133228520_133228564	0.357684	GLI1..3.p2	AK046527|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	AK052446|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	AK148285|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	AK080590|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	NM_001145955|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	NM_001145956|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	NM_178698|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V
mm9_v1_chr10_+_126602182_126602286	0.355434	GLI1..3.p2	AK144484|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC057199|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	NM_008080|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1	BC019969|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr16_-_87432721_87432850	0.353976	GLI1..3.p2	AK173009|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK165062|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK036725|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	AK019706|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116272|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	BC116273|Ltn1|78913|listerin E3 ubiquitin protein ligase 1	NM_001081068|Ltn1|78913|listerin E3 ubiquitin protein ligase 1
mm9_v1_chr11_+_87574041_87574047	0.353265	GLI1..3.p2	AK043747|Bzrap1|207777|benzodiazepine receptor associated protein 1	NM_172449|Bzrap1|207777|benzodiazepine receptor associated protein 1
mm9_v1_chr17_+_23810844_23810967	0.351743	GLI1..3.p2	AK003865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)	BC079865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)
mm9_v1_chr5_-_144031617_144031663	0.348902	GLI1..3.p2	BC057078|Zfp316|54201|zinc finger protein 316
mm9_v1_chr2_-_25174662_25174740	0.348214	GLI1..3.p2	AK090286|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177656|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177657|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_008169|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr18_+_42671147_42671160	0.348084	GLI1..3.p2	AK150312|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK013830|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK010571|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr6_+_47827535_47827591	0.347651	GLI1..3.p2	NM_146175|Zfp282|101095|zinc finger protein 282	AK088531|Zfp282|101095|zinc finger protein 282	AK148038|Zfp282|101095|zinc finger protein 282
mm9_v1_chr16_+_84835361_84835405	0.346794	GLI1..3.p2	AY282793|Gabpa|14390|GA repeat binding protein, alpha	M74515|Gabpa|14390|GA repeat binding protein, alpha	BC052448|Gabpa|14390|GA repeat binding protein, alpha	NM_008065|Gabpa|14390|GA repeat binding protein, alpha
mm9_v1_chr7_+_106415956_106416023	0.345733	GLI1..3.p2	BC053039|Mtap6|17760|microtubule-associated protein 6	NM_001048167|Mtap6|17760|microtubule-associated protein 6	NM_010837|Mtap6|17760|microtubule-associated protein 6	AK082709|Mtap6|17760|microtubule-associated protein 6	AK087413|Mtap6|17760|microtubule-associated protein 6
mm9_v1_chr11_+_78640059_78640096	0.34521	GLI1..3.p2	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr2_-_92274110_92274239	0.343861	GLI1..3.p2	AB003433|Cry2|12953|cryptochrome 2 (photolyase-like)	AK172994|Cry2|12953|cryptochrome 2 (photolyase-like)	BC054794|Cry2|12953|cryptochrome 2 (photolyase-like)	BC066799|Cry2|12953|cryptochrome 2 (photolyase-like)	AK037778|Cry2|12953|cryptochrome 2 (photolyase-like)	AK041696|Cry2|12953|cryptochrome 2 (photolyase-like)	AF156987|Cry2|12953|cryptochrome 2 (photolyase-like)	AK133781|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_001113333|Cry2|12953|cryptochrome 2 (photolyase-like)	NM_009963|Cry2|12953|cryptochrome 2 (photolyase-like)	AK051524|Cry2|12953|cryptochrome 2 (photolyase-like)
mm9_v1_chr2_+_32431237_32431362	0.343119	GLI1..3.p2	BC094346|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	NM_198191|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	BC117018|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	BC119037|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1	AK164998|Pip5kl1|227733|phosphatidylinositol-4-phosphate 5-kinase-like 1
mm9_v1_chr4_-_135609269_135609274	0.342918	GLI1..3.p2	BC025077|Rpl11|67025|ribosomal protein L11
mm9_v1_chr8_-_63433528_63433596	0.342896	GLI1..3.p2	BC057133|Clcn3|12725|chloride channel 3	NM_173876|Clcn3|12725|chloride channel 3
mm9_v1_chr1_+_93041665_93041717	0.342695	GLI1..3.p2	AK133355|Rbm44|329207|RNA binding motif protein 44	NM_001033408|Rbm44|329207|RNA binding motif protein 44	BC150950|Rbm44|329207|RNA binding motif protein 44
mm9_v1_chr9_+_120213011_120213097	0.342299	GLI1..3.p2	AK148358|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr11_+_115281434_115281480	0.34209	GLI1..3.p2	NM_183285|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK009318|Kctd2|70382|potassium channel tetramerisation domain containing 2	AK046534|Kctd2|70382|potassium channel tetramerisation domain containing 2	BC095988|Kctd2|70382|potassium channel tetramerisation domain containing 2
mm9_v1_chr4_-_147278757_147278826	0.341991	GLI1..3.p2	AY028170|Mfn2|170731|mitofusin 2	AK146801|Mfn2|170731|mitofusin 2	BC046503|Mfn2|170731|mitofusin 2	AK042080|Mfn2|170731|mitofusin 2	AK052689|Mfn2|170731|mitofusin 2	AK169373|Mfn2|170731|mitofusin 2	AK049583|Mfn2|170731|mitofusin 2	AF384100|Mfn2|170731|mitofusin 2	AK147863|Mfn2|170731|mitofusin 2
mm9_v1_chr4_-_47487233_47487247	0.3412	GLI1..3.p2	NM_019998|Alg2|56737|asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)
mm9_v1_chr7_+_57230233_57230438	0.341073	GLI1..3.p2	AK032845|Nell1|338352|NEL-like 1 (chicken)
mm9_v1_chr17_-_23701167_23701225	0.339775	GLI1..3.p2	NM_001033496|Zfp213|449521|zinc finger protein 213
mm9_v1_chr10_+_127162447_127162481	0.339482	GLI1..3.p2	NM_009312|Tac2|21334|tachykinin 2	BC031348|Tac2|21334|tachykinin 2	BC051476|Tac2|21334|tachykinin 2	AF186116|Tac2|21334|tachykinin 2
mm9_v1_chr16_-_91011339_91011552	0.339	GLI1..3.p2	NM_001045515|Synj1|104015|synaptojanin 1	NM_001164483|Synj1|104015|synaptojanin 1
mm9_v1_chr6_-_85452851_85452987	0.338673	GLI1..3.p2	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chrX_+_92907016_92907016	0.33812	GLI1..3.p2	AK134628|Zc3h12b|547176|zinc finger CCCH-type containing 12B	NM_001034907|Zc3h12b|547176|zinc finger CCCH-type containing 12B
mm9_v1_chr9_-_119002573_119002594	0.337013	GLI1..3.p2	BC015249|Plcd1|18799|phospholipase C, delta 1	BC025798|Plcd1|18799|phospholipase C, delta 1
mm9_v1_chr10_+_28749890_28749938	0.33694	GLI1..3.p2	
mm9_v1_chr9_-_45762863_45762870	0.334119	GLI1..3.p2	AK196459|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr6_+_72389009_72389080	0.333776	GLI1..3.p2	AK145188|4930414L22Rik|78108|RIKEN cDNA 4930414L22 gene
mm9_v1_chr9_+_113840051_113840064	0.333337	GLI1..3.p2	AK143282|Ubp1|22221|upstream binding protein 1	NM_001083319|Ubp1|22221|upstream binding protein 1	NM_013699|Ubp1|22221|upstream binding protein 1
mm9_v1_chr7_-_125591493_125591732	0.333257	GLI1..3.p2	AK144560|Syt17|110058|synaptotagmin XVII	AK145293|Syt17|110058|synaptotagmin XVII
mm9_v1_chr2_+_154483045_154483087	0.333072	GLI1..3.p2	BC006905|Chmp4b|75608|chromatin modifying protein 4B
mm9_v1_chr5_-_147775315_147775391	0.332731	GLI1..3.p2	BC115684|Mtif3|76366|mitochondrial translational initiation factor 3	BC115685|Mtif3|76366|mitochondrial translational initiation factor 3	BC052439|Mtif3|76366|mitochondrial translational initiation factor 3	AK012733|Mtif3|76366|mitochondrial translational initiation factor 3	AK147090|Mtif3|76366|mitochondrial translational initiation factor 3	NM_029581|Mtif3|76366|mitochondrial translational initiation factor 3	AK088146|Mtif3|76366|mitochondrial translational initiation factor 3
mm9_v1_chr13_+_48356487_48356596	0.331523	GLI1..3.p2	AK041164|Id4|15904|inhibitor of DNA binding 4
mm9_v1_chr7_-_51053314_51053338	0.330661	GLI1..3.p2	AK134755|2310002F09Rik|69529|RIKEN cDNA 2310002F09 gene
mm9_v1_chr3_+_68298129_68298184	0.330238	GLI1..3.p2	AK146930|Schip1|30953|schwannomin interacting protein 1	AK168005|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr15_-_25343483_25343542	0.33015	GLI1..3.p2	AK159486|Basp1|70350|brain abundant, membrane attached signal protein 1	AK011545|Basp1|70350|brain abundant, membrane attached signal protein 1	AK046868|Basp1|70350|brain abundant, membrane attached signal protein 1	NM_027395|Basp1|70350|brain abundant, membrane attached signal protein 1
mm9_v1_chr7_-_140044280_140044335	0.328213	GLI1..3.p2	BC038323|Mettl10|72096|methyltransferase like 10	BC051506|Mettl10|72096|methyltransferase like 10	BC096622|Mettl10|72096|methyltransferase like 10	AK008476|Mettl10|72096|methyltransferase like 10	BC116375|Mettl10|72096|methyltransferase like 10	NM_028095|Mettl10|72096|methyltransferase like 10
mm9_v1_chr10_-_127058199_127058205	0.327847	GLI1..3.p2	AK078273|Lrp1|16971|low density lipoprotein receptor-related protein 1	NM_008512|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr7_-_134027930_134028177	0.32784	GLI1..3.p2	BC077714|Taok2|381921|TAO kinase 2	BC075676|Taok2|381921|TAO kinase 2
mm9_v1_chr18_+_42671163_42671217	0.327704	GLI1..3.p2	AK076993|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AK168434|Tcerg1|56070|transcription elongation regulator 1 (CA150)	AB023485|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC040284|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC039185|Tcerg1|56070|transcription elongation regulator 1 (CA150)	BC016542|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr3_-_104315837_104315857	0.327533	GLI1..3.p2	AK158022|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	AK155089|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr13_+_46597271_46597443	0.325556	GLI1..3.p2	AK035556|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	NM_026056|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr12_+_78340039_78340051	0.323692	GLI1..3.p2	AK134537|Fut8|53618|fucosyltransferase 8
mm9_v1_chr12_+_89598984_89599091	0.323535	GLI1..3.p2	AK011310|Adck1|72113|aarF domain containing kinase 1	AK154839|Adck1|72113|aarF domain containing kinase 1
mm9_v1_chr5_-_124545759_124545774	0.322444	GLI1..3.p2	BC053014|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr15_+_80086643_80086644	0.322392	GLI1..3.p2	L13791|Atf4|11911|activating transcription factor 4
mm9_v1_chr7_+_30093030_30093065	0.321819	GLI1..3.p2	AK142419|Dpf1|29861|D4, zinc and double PHD fingers family 1	U48239|Dpf1|29861|D4, zinc and double PHD fingers family 1
mm9_v1_chr8_+_125935441_125935463	0.320373	GLI1..3.p2	AK012528|Tubb3|22152|tubulin, beta 3	AK051298|Tubb3|22152|tubulin, beta 3	AK082942|Tubb3|22152|tubulin, beta 3	AK149014|Tubb3|22152|tubulin, beta 3	BC088749|Tubb3|22152|tubulin, beta 3	BC031357|Tubb3|22152|tubulin, beta 3	NM_023279|Tubb3|22152|tubulin, beta 3
mm9_v1_chr9_+_26807258_26807270	0.320057	GLI1..3.p2	NM_144543|Thyn1|77862|thymocyte nuclear protein 1
mm9_v1_chr11_-_68666619_68666656	0.319948	GLI1..3.p2	AF323918|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	NM_023668|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr6_-_90612275_90612375	0.319889	GLI1..3.p2	AK044711|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr2_+_119176963_119176993	0.318933	GLI1..3.p2	NM_026929|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	AK032218|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr1_-_75475845_75475926	0.318387	GLI1..3.p2	BC071273|Chpf|74241|chondroitin polymerizing factor	BC057050|Chpf|74241|chondroitin polymerizing factor	BC060598|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chr12_+_3365295_3365555	0.318245	GLI1..3.p2	AK147572|Kif3c|16570|kinesin family member 3C	BC062648|Kif3c|16570|kinesin family member 3C	AF013116|Kif3c|16570|kinesin family member 3C
mm9_v1_chr6_-_122289630_122289670	0.31807	GLI1..3.p2	S73882|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73883|Phc1|13619|polyhomeotic-like 1 (Drosophila)	S73884|Phc1|13619|polyhomeotic-like 1 (Drosophila)	BC046535|Phc1|13619|polyhomeotic-like 1 (Drosophila)	AK167590|Phc1|13619|polyhomeotic-like 1 (Drosophila)
mm9_v1_chr7_+_72838302_72838367	0.317584	GLI1..3.p2	NM_026795|Tm2d3|68634|TM2 domain containing 3	NM_178056|Tm2d3|68634|TM2 domain containing 3	AK003917|Tm2d3|68634|TM2 domain containing 3	BC024620|Tm2d3|68634|TM2 domain containing 3
mm9_v1_chr19_-_32462926_32462979	0.317171	GLI1..3.p2	AK151170|Sgms1|208449|sphingomyelin synthase 1	AK153406|Sgms1|208449|sphingomyelin synthase 1	AK146782|Sgms1|208449|sphingomyelin synthase 1	AY509044|Sgms1|208449|sphingomyelin synthase 1	NM_144792|Sgms1|208449|sphingomyelin synthase 1
mm9_v1_chr11_+_94871181_94871224	0.316921	GLI1..3.p2	AK049753|Samd14|217125|sterile alpha motif domain containing 14	NM_146025|Samd14|217125|sterile alpha motif domain containing 14	AK047184|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr11_+_94871643_94871672	0.31488	GLI1..3.p2	AK044765|Samd14|217125|sterile alpha motif domain containing 14	BC034054|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr7_+_73834774_73834871	0.313309	GLI1..3.p2	NM_001191001|Lins|72635|lines homolog (Drosophila)	NM_152815|Lins|72635|lines homolog (Drosophila)	AK156066|Lins|72635|lines homolog (Drosophila)	AK044132|Lins|72635|lines homolog (Drosophila)	AK012554|Lins|72635|lines homolog (Drosophila)	AK171170|Lins|72635|lines homolog (Drosophila)	BC030943|Lins|72635|lines homolog (Drosophila)	BC058648|Lins|72635|lines homolog (Drosophila)
mm9_v1_chr4_+_132567420_132567463	0.313068	GLI1..3.p2	BC042621|Ahdc1|230793|AT hook, DNA binding motif, containing 1	NM_146155|Ahdc1|230793|AT hook, DNA binding motif, containing 1
mm9_v1_chr7_-_88599560_88599643	0.311888	GLI1..3.p2	BC125476|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	BC144948|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	NM_007755|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	Y08260|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1	AK136088|Cpeb1|12877|cytoplasmic polyadenylation element binding protein 1
mm9_v1_chr4_+_116768960_116768960	0.311576	GLI1..3.p2	AB010833|Ptch2|19207|patched homolog 2	NM_008958|Ptch2|19207|patched homolog 2
mm9_v1_chr11_+_4035162_4035238	0.310659	GLI1..3.p2	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr2_+_156546758_156546851	0.310525	GLI1..3.p2	AK089484|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK150554|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK156212|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK211649|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AF073935|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr7_-_6683113_6683136	0.309848	GLI1..3.p2	BC085183|Peg3|18616|paternally expressed 3	BC072661|Peg3|18616|paternally expressed 3	AB003040|Peg3|18616|paternally expressed 3	AK044602|Peg3|18616|paternally expressed 3	AK053523|Peg3|18616|paternally expressed 3	AK141217|Peg3|18616|paternally expressed 3	NM_008817|Peg3|18616|paternally expressed 3	AK163845|Peg3|18616|paternally expressed 3
mm9_v1_chr9_+_65756816_65756864	0.309597	GLI1..3.p2	AK090262|Csnk1g1|214897|casein kinase 1, gamma 1	NM_173185|Csnk1g1|214897|casein kinase 1, gamma 1	AK050473|Csnk1g1|214897|casein kinase 1, gamma 1	AK149310|Csnk1g1|214897|casein kinase 1, gamma 1
mm9_v1_chr16_+_49855786_49855899	0.309302	GLI1..3.p2	AK151922|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	AB012693|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	BC012667|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr19_-_4625276_4625332	0.307642	GLI1..3.p2	BC004060|Rce1|19671|RCE1 homolog, prenyl protein peptidase (S. cerevisiae)
mm9_v1_chr18_-_46372017_46372260	0.307183	GLI1..3.p2	AY251389|Trim36|28105|tripartite motif-containing 36	AB103063|Trim36|28105|tripartite motif-containing 36	BC058106|Trim36|28105|tripartite motif-containing 36	NM_178872|Trim36|28105|tripartite motif-containing 36
mm9_v1_chr11_-_120645428_120645541	0.307171	GLI1..3.p2	AF015770|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK004573|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94350|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC066023|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	NM_009053|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr6_-_118429262_118429276	0.306727	GLI1..3.p2	AK007823|Zfp9|22750|zinc finger protein 9	AK029052|Zfp9|22750|zinc finger protein 9
mm9_v1_chr3_-_104315689_104315735	0.306658	GLI1..3.p2	BC138422|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2	BC094228|Lrig2|269473|leucine-rich repeats and immunoglobulin-like domains 2
mm9_v1_chr8_+_87595619_87595694	0.305258	GLI1..3.p2	AK159104|Dhps|330817|deoxyhypusine synthase	NM_001039514|Dhps|330817|deoxyhypusine synthase	BC061234|Dhps|330817|deoxyhypusine synthase
mm9_v1_chr6_-_120772651_120772678	0.305093	GLI1..3.p2	AK189499|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK186366|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK189578|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK167644|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr14_-_55527674_55527762	0.304864	GLI1..3.p2	DQ846835|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr17_+_25864655_25864695	0.304387	GLI1..3.p2	AK009926|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	AK049334|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1	NM_028009|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr5_-_122714423_122714468	0.304177	GLI1..3.p2	BC141084|Tctn1|654470|tectonic family member 1	AK085676|Tctn1|654470|tectonic family member 1	AK144772|Tctn1|654470|tectonic family member 1	AK036568|Tctn1|654470|tectonic family member 1	AK138661|Tctn1|654470|tectonic family member 1	DQ278867|Tctn1|654470|tectonic family member 1	NM_001039153|Tctn1|654470|tectonic family member 1
mm9_v1_chr1_-_88255943_88256002	0.303533	GLI1..3.p2	AK083307|Ncl|17975|nucleolin	AK161706|Ncl|17975|nucleolin	AK031606|Ncl|17975|nucleolin
mm9_v1_chr15_+_81066029_81066052	0.302934	GLI1..3.p2	AK134867|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr11_+_68902025_68902081	0.302655	GLI1..3.p2	BC055105|Vamp2|22318|vesicle-associated membrane protein 2	NM_009497|Vamp2|22318|vesicle-associated membrane protein 2	BC039745|Vamp2|22318|vesicle-associated membrane protein 2	U60150|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr17_-_36034018_36034097	0.301518	GLI1..3.p2	AK172070|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK038622|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK145087|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr13_+_81922236_81922300	0.301479	GLI1..3.p2	AK017505|Cetn3|12626|centrin 3	BC002162|Cetn3|12626|centrin 3	BC054097|Cetn3|12626|centrin 3	AK003473|Cetn3|12626|centrin 3	AK006289|Cetn3|12626|centrin 3	AK004532|Cetn3|12626|centrin 3	AK006891|Cetn3|12626|centrin 3	NM_007684|Cetn3|12626|centrin 3	AK011821|Cetn3|12626|centrin 3
mm9_v1_chr10_-_126700105_126700237	0.301478	GLI1..3.p2	AF067179|Kif5a|16572|kinesin family member 5A	AK147660|Kif5a|16572|kinesin family member 5A	BC058396|Kif5a|16572|kinesin family member 5A	AK147707|Kif5a|16572|kinesin family member 5A	BC027115|Kif5a|16572|kinesin family member 5A	AK147352|Kif5a|16572|kinesin family member 5A
mm9_v1_chr18_-_38094995_38095137	0.301431	GLI1..3.p2	AK140734|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK220466|Diap1|13367|diaphanous homolog 1 (Drosophila)	NM_007858|Diap1|13367|diaphanous homolog 1 (Drosophila)	U96963|Diap1|13367|diaphanous homolog 1 (Drosophila)	BC070412|Diap1|13367|diaphanous homolog 1 (Drosophila)	AK012707|Diap1|13367|diaphanous homolog 1 (Drosophila)
mm9_v1_chr15_-_98126513_98126591	0.300565	GLI1..3.p2	AK036826|Zfp641|239652|zinc finger protein 641	BC111896|Zfp641|239652|zinc finger protein 641	BC112418|Zfp641|239652|zinc finger protein 641	NM_173769|Zfp641|239652|zinc finger protein 641	AK087530|Zfp641|239652|zinc finger protein 641	AK136402|Zfp641|239652|zinc finger protein 641
mm9_v1_chr9_+_43875175_43875249	0.300261	GLI1..3.p2	AY255638|Usp2|53376|ubiquitin specific peptidase 2	AY255639|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr3_+_105255444_105255490	0.300012	GLI1..3.p2	AK033962|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr14_+_56179739_56179780	0.299646	GLI1..3.p2	NM_001199009|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK150183|Dcaf11|28199|DDB1 and CUL4 associated factor 11
mm9_v1_chr9_-_118059275_118059324	0.299166	GLI1..3.p2	AK008567|Cmc1|67899|COX assembly mitochondrial protein homolog (S. cerevisiae)	BC048547|Cmc1|67899|COX assembly mitochondrial protein homolog (S. cerevisiae)
mm9_v1_chr1_-_97564064_97564129	0.299076	GLI1..3.p2	AK041723|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	AK003690|St8sia4|20452|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm9_v1_chr16_+_18776936_18776949	0.29775	GLI1..3.p2	AK077282|Cldn5|12741|claudin 5	NM_013805|Cldn5|12741|claudin 5	AF035814|Cldn5|12741|claudin 5	BC083341|Cldn5|12741|claudin 5
mm9_v1_chr16_+_18348311_18348366	0.297547	GLI1..3.p2	BC052393|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	BC056980|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome	NM_033474|Arvcf|11877|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm9_v1_chr19_+_46673553_46673665	0.294673	GLI1..3.p2	NM_001177812|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	NM_146099|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK087487|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	BC026369|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK154686|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	AK169294|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed	BC058949|D19Wsu162e|226178|DNA segment, Chr 19, Wayne State University 162, expressed
mm9_v1_chr9_-_45763300_45763376	0.294655	GLI1..3.p2	AK081177|Sidt2|214597|SID1 transmembrane family, member 2	BC023957|Sidt2|214597|SID1 transmembrane family, member 2	NM_172257|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr11_-_106474237_106474312	0.294468	GLI1..3.p2	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr6_+_51420358_51420464	0.294147	GLI1..3.p2	BC110376|Cbx3|12417|chromobox homolog 3 (Drosophila HP1 gamma)
mm9_v1_chr3_+_106524842_106524867	0.294114	GLI1..3.p2	AK156488|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	AK008209|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	AK141379|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	BC117763|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	BC117764|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	AK048030|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	BC094643|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene
mm9_v1_chr14_+_122506301_122506307	0.293895	GLI1..3.p2	AK075720|Tm9sf2|68059|transmembrane 9 superfamily member 2	NM_080556|Tm9sf2|68059|transmembrane 9 superfamily member 2
mm9_v1_chr18_+_61204953_61205094	0.293565	GLI1..3.p2	X04367|Pdgfrb|18596|platelet derived growth factor receptor, beta polypeptide
mm9_v1_chr6_+_86992796_86992906	0.293386	GLI1..3.p2	AK087173|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	NM_013528|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK019852|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AK039792|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC050762|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	AF334736|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1	BC010516|Gfpt1|14583|glutamine fructose-6-phosphate transaminase 1
mm9_v1_chr11_+_45869473_45869501	0.291432	GLI1..3.p2	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr6_+_86799460_86799754	0.290675	GLI1..3.p2	AK147363|Aak1|269774|AP2 associated kinase 1	NM_001040106|Aak1|269774|AP2 associated kinase 1	NM_177762|Aak1|269774|AP2 associated kinase 1	AK158879|Aak1|269774|AP2 associated kinase 1	BC141176|Aak1|269774|AP2 associated kinase 1
mm9_v1_chr12_+_84861415_84861438	0.289604	GLI1..3.p2	NM_030246|Dcaf4|73828|DDB1 and CUL4 associated factor 4
mm9_v1_chr6_-_48790453_48790578	0.28915	GLI1..3.p2	AF115426|Tmem176b|65963|transmembrane protein 176B	AB031386|Tmem176b|65963|transmembrane protein 176B
mm9_v1_chr5_+_148672171_148672247	0.289057	GLI1..3.p2	AK011115|Pomp|66537|proteasome maturation protein	AK167958|Pomp|66537|proteasome maturation protein	NM_025624|Pomp|66537|proteasome maturation protein	AK003439|Pomp|66537|proteasome maturation protein	AK013934|Pomp|66537|proteasome maturation protein	BC027016|Pomp|66537|proteasome maturation protein	AK044283|Pomp|66537|proteasome maturation protein	AK132041|Pomp|66537|proteasome maturation protein	AK014296|Pomp|66537|proteasome maturation protein	AK012455|Pomp|66537|proteasome maturation protein
mm9_v1_chr9_+_21420612_21420824	0.288716	GLI1..3.p2	BC079560|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174078|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_001174079|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	NM_011417|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK147285|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK166837|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK160825|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK135308|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK142137|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC061214|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC060229|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC023830|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC032162|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC054056|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	BC014760|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	AK051530|Smarca4|20586|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm9_v1_chr17_-_24346171_24346241	0.286568	GLI1..3.p2	AF128866|Ntn3|18209|netrin 3	AK141856|Ntn3|18209|netrin 3
mm9_v1_chr1_+_59970358_59970454	0.285938	GLI1..3.p2	BC080299|Fam117b|72750|family with sequence similarity 117, member B
mm9_v1_chr3_-_87734096_87734116	0.284462	GLI1..3.p2	NM_153562|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1
mm9_v1_chr1_+_120285920_120286055	0.284291	GLI1..3.p2	AK080782|Clasp1|76707|CLIP associating protein 1	BC157938|Clasp1|76707|CLIP associating protein 1	BC158064|Clasp1|76707|CLIP associating protein 1	AJ276962|Clasp1|76707|CLIP associating protein 1	AK031181|Clasp1|76707|CLIP associating protein 1
mm9_v1_chr2_+_135885126_135885166	0.283792	GLI1..3.p2	AK014127|6330527O06Rik|76161|RIKEN cDNA 6330527O06 gene
mm9_v1_chr12_+_3365102_3365131	0.283681	GLI1..3.p2	AK220283|Kif3c|16570|kinesin family member 3C	NM_008445|Kif3c|16570|kinesin family member 3C
mm9_v1_chr17_+_36116889_36116901	0.2827	GLI1..3.p2	NM_008136|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr2_+_84877428_84877456	0.282683	GLI1..3.p2	BC042502|Ssrp1|20833|structure specific recognition protein 1
mm9_v1_chr1_-_173152634_173152646	0.282142	GLI1..3.p2	AK028388|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)	NM_001037170|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr19_+_27291897_27291921	0.281691	GLI1..3.p2	U06670|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr2_+_84518544_84518790	0.28115	GLI1..3.p2	NM_025885|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK010552|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK005399|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK168787|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK160579|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC082559|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC055404|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044207|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	BC044302|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)	AK209282|Med19|381379|mediator of RNA polymerase II transcription, subunit 19 homolog (yeast)
mm9_v1_chr11_+_51076626_51076703	0.280768	GLI1..3.p2	NM_007714|Clk4|12750|CDC like kinase 4	BC012675|Clk4|12750|CDC like kinase 4	AK013974|Clk4|12750|CDC like kinase 4	U94846|Clk4|12750|CDC like kinase 4	AF033566|Clk4|12750|CDC like kinase 4
mm9_v1_chr5_-_22939130_22939177	0.280645	GLI1..3.p2	AK017143|5031425E22Rik|269630|RIKEN cDNA 5031425E22 gene	AK042126|5031425E22Rik|269630|RIKEN cDNA 5031425E22 gene
mm9_v1_chr9_-_100471461_100471511	0.280505	GLI1..3.p2	NM_001101483|Tmem22|245020|transmembrane protein 22
mm9_v1_chr12_+_109417947_109418052	0.278467	GLI1..3.p2	NM_009832|Ccnk|12454|cyclin K	AK089386|Ccnk|12454|cyclin K	AK146711|Ccnk|12454|cyclin K	AK154765|Ccnk|12454|cyclin K	AK154679|Ccnk|12454|cyclin K	BC027297|Ccnk|12454|cyclin K
mm9_v1_chr11_+_68505576_68505611	0.277899	GLI1..3.p2	AK047340|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	AK163604|Myh10|77579|myosin, heavy polypeptide 10, non-muscle	AK052435|Myh10|77579|myosin, heavy polypeptide 10, non-muscle
mm9_v1_chr15_+_75824198_75824279	0.277492	GLI1..3.p2	BC048082|Mapk15|332110|mitogen-activated protein kinase 15	NM_177922|Mapk15|332110|mitogen-activated protein kinase 15
mm9_v1_chr6_+_4697305_4697405	0.276435	GLI1..3.p2	NM_001040611|Peg10|170676|paternally expressed 10	NM_130877|Peg10|170676|paternally expressed 10	AB091827|Peg10|170676|paternally expressed 10	AJ006464|Peg10|170676|paternally expressed 10
mm9_v1_chr11_-_107655777_107655857	0.276009	GLI1..3.p2	AJ272045|Cacng4|54377|calcium channel, voltage-dependent, gamma subunit 4	NM_019431|Cacng4|54377|calcium channel, voltage-dependent, gamma subunit 4	BC138503|Cacng4|54377|calcium channel, voltage-dependent, gamma subunit 4	BC138506|Cacng4|54377|calcium channel, voltage-dependent, gamma subunit 4
mm9_v1_chr13_-_40825789_40825811	0.275888	GLI1..3.p2	U17287|Tcfap2a|21418|transcription factor AP-2, alpha	AK053704|Tcfap2a|21418|transcription factor AP-2, alpha	NM_001122948|Tcfap2a|21418|transcription factor AP-2, alpha
mm9_v1_chr3_-_107320881_107320937	0.275284	GLI1..3.p2	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr17_+_46818005_46818130	0.275235	GLI1..3.p2	AK010863|Mea1|17256|male enhanced antigen 1	AK008305|Mea1|17256|male enhanced antigen 1	AK008194|Mea1|17256|male enhanced antigen 1	AK010904|Mea1|17256|male enhanced antigen 1	AK010962|Mea1|17256|male enhanced antigen 1	AK012617|Mea1|17256|male enhanced antigen 1	AK005369|Mea1|17256|male enhanced antigen 1	AK005106|Mea1|17256|male enhanced antigen 1	L10401|Mea1|17256|male enhanced antigen 1	M27938|Mea1|17256|male enhanced antigen 1	NM_010787|Mea1|17256|male enhanced antigen 1	AK011189|Mea1|17256|male enhanced antigen 1	D17341|Mea1|17256|male enhanced antigen 1
mm9_v1_chr7_-_52309439_52309541	0.275127	GLI1..3.p2	AK011086|Prrg2|65116|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm9_v1_chr1_-_88255804_88255941	0.274172	GLI1..3.p2	AK181817|Ncl|17975|nucleolin	AK215976|Ncl|17975|nucleolin	BC005460|Ncl|17975|nucleolin	BC012657|Ncl|17975|nucleolin	BC014285|Ncl|17975|nucleolin	AK168579|Ncl|17975|nucleolin	AK163275|Ncl|17975|nucleolin	AK011201|Ncl|17975|nucleolin	AK028681|Ncl|17975|nucleolin	AK029128|Ncl|17975|nucleolin	AK088402|Ncl|17975|nucleolin	AK144894|Ncl|17975|nucleolin	AK161597|Ncl|17975|nucleolin	AK165167|Ncl|17975|nucleolin	AK166681|Ncl|17975|nucleolin	AK168623|Ncl|17975|nucleolin	AF318184|Ncl|17975|nucleolin
mm9_v1_chr5_-_147396407_147396450	0.274122	GLI1..3.p2	D21061|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chr5_-_128938328_128938476	0.273558	GLI1..3.p2	AB100355|Tmem132d|243274|transmembrane protein 132D	BC140953|Tmem132d|243274|transmembrane protein 132D
mm9_v1_chr9_-_21397188_21397310	0.272467	GLI1..3.p2	BC002282|Yipf2|74766|Yip1 domain family, member 2	NM_138303|Yipf2|74766|Yip1 domain family, member 2	BC003289|Yipf2|74766|Yip1 domain family, member 2	AK033705|Yipf2|74766|Yip1 domain family, member 2	AK133631|Yipf2|74766|Yip1 domain family, member 2	AK004959|Yipf2|74766|Yip1 domain family, member 2
mm9_v1_chr7_-_125386862_125387193	0.272311	GLI1..3.p2	AK220328|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK041264|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK047829|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK157798|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	AK049391|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	NM_001031814|Smg1|233789|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm9_v1_chr7_+_133416177_133416391	0.271498	GLI1..3.p2	BC025837|Sbk1|104175|SH3-binding kinase 1	BC024114|Sbk1|104175|SH3-binding kinase 1
mm9_v1_chr6_-_148392841_148392873	0.270348	GLI1..3.p2	AK137545|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	AK046396|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	NM_198967|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1
mm9_v1_chr7_-_116895708_116895795	0.270023	GLI1..3.p2	AK009147|Tmem9b|56786|TMEM9 domain family, member B	AK077253|Tmem9b|56786|TMEM9 domain family, member B	AK007430|Tmem9b|56786|TMEM9 domain family, member B	BC002208|Tmem9b|56786|TMEM9 domain family, member B	NM_020050|Tmem9b|56786|TMEM9 domain family, member B	AK147127|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chr12_+_85455319_85455327	0.269221	GLI1..3.p2	AK005826|Dnalc1|105000|dynein, axonemal, light chain 1	BC070454|Dnalc1|105000|dynein, axonemal, light chain 1
mm9_v1_chr1_-_153192360_153192399	0.26858	GLI1..3.p2	
mm9_v1_chr18_-_10610315_10610349	0.268459	GLI1..3.p2	AK145333|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	NM_001081222|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr15_+_91881593_91881615	0.268325	GLI1..3.p2	AK138969|Cntn1|12805|contactin 1	NM_001159648|Cntn1|12805|contactin 1
mm9_v1_chr18_+_38578583_38578694	0.268183	GLI1..3.p2	AF220209|Ndfip1|65113|Nedd4 family interacting protein 1	AK050560|Ndfip1|65113|Nedd4 family interacting protein 1	BC026372|Ndfip1|65113|Nedd4 family interacting protein 1	NM_022996|Ndfip1|65113|Nedd4 family interacting protein 1	BC020359|Ndfip1|65113|Nedd4 family interacting protein 1
mm9_v1_chr18_+_76401531_76401583	0.267819	GLI1..3.p2	BC021342|Smad2|17126|MAD homolog 2 (Drosophila)	AK007817|Smad2|17126|MAD homolog 2 (Drosophila)	NM_010754|Smad2|17126|MAD homolog 2 (Drosophila)
mm9_v1_chr15_-_103368312_103368499	0.266914	GLI1..3.p2	AF281676|Ppp1r1a|58200|protein phosphatase 1, regulatory (inhibitor) subunit 1A	BC025123|Ppp1r1a|58200|protein phosphatase 1, regulatory (inhibitor) subunit 1A	NM_021391|Ppp1r1a|58200|protein phosphatase 1, regulatory (inhibitor) subunit 1A
mm9_v1_chr19_+_4231881_4231919	0.266439	GLI1..3.p2	NM_027196|Pold4|69745|polymerase (DNA-directed), delta 4
mm9_v1_chr7_-_99785544_99785651	0.266292	GLI1..3.p2	AK048925|Ankrd42|73845|ankyrin repeat domain 42	AK029888|Ankrd42|73845|ankyrin repeat domain 42	AK133339|Ankrd42|73845|ankyrin repeat domain 42	AK033599|Ankrd42|73845|ankyrin repeat domain 42	BC100433|Ankrd42|73845|ankyrin repeat domain 42	AK029511|Ankrd42|73845|ankyrin repeat domain 42	NM_028665|Ankrd42|73845|ankyrin repeat domain 42
mm9_v1_chr8_-_67171692_67171792	0.266119	GLI1..3.p2	U23184|Cpe|12876|carboxypeptidase E	X61232|Cpe|12876|carboxypeptidase E
mm9_v1_chr9_+_118415358_118415568	0.265201	GLI1..3.p2	AK161568|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AK172292|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC037641|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	AF051357|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC003268|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC096467|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	NM_018748|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC023102|Golga4|54214|golgi autoantigen, golgin subfamily a, 4	BC057561|Golga4|54214|golgi autoantigen, golgin subfamily a, 4
mm9_v1_chr9_+_45646611_45646685	0.264142	GLI1..3.p2	NM_001145947|Bace1|23821|beta-site APP cleaving enzyme 1	NM_011792|Bace1|23821|beta-site APP cleaving enzyme 1	AK033112|Bace1|23821|beta-site APP cleaving enzyme 1	AK041285|Bace1|23821|beta-site APP cleaving enzyme 1	AK080498|Bace1|23821|beta-site APP cleaving enzyme 1	AK082317|Bace1|23821|beta-site APP cleaving enzyme 1	AK163583|Bace1|23821|beta-site APP cleaving enzyme 1	AK046175|Bace1|23821|beta-site APP cleaving enzyme 1	AK082230|Bace1|23821|beta-site APP cleaving enzyme 1	AK049626|Bace1|23821|beta-site APP cleaving enzyme 1	AF190726|Bace1|23821|beta-site APP cleaving enzyme 1	AK014464|Bace1|23821|beta-site APP cleaving enzyme 1	BC048189|Bace1|23821|beta-site APP cleaving enzyme 1
mm9_v1_chr13_+_54472806_54472829	0.263204	GLI1..3.p2	BC058395|Cplx2|12890|complexin 2
mm9_v1_chr3_+_54496726_54496818	0.26315	GLI1..3.p2	AK171787|Fam48a|56790|family with sequence similarity 48, member A	AK045110|Fam48a|56790|family with sequence similarity 48, member A	AK050619|Fam48a|56790|family with sequence similarity 48, member A	AK083379|Fam48a|56790|family with sequence similarity 48, member A
mm9_v1_chr9_+_111214242_111214242	0.262564	GLI1..3.p2	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr9_-_21875784_21875847	0.262298	GLI1..3.p2	AY072705|Zfp653|319601|zinc finger protein 653	BC038037|Zfp653|319601|zinc finger protein 653	NM_177318|Zfp653|319601|zinc finger protein 653	AK171735|Zfp653|319601|zinc finger protein 653
mm9_v1_chr3_+_105255247_105255337	0.25952	GLI1..3.p2	NM_001039347|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AK147574|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr1_+_57028300_57028346	0.259409	GLI1..3.p2	AK046727|9130024F11Rik|329160|RIKEN cDNA 9130024F11 gene
mm9_v1_chr2_+_152934184_152934350	0.259056	GLI1..3.p2	NM_001172117|Hck|15162|hemopoietic cell kinase	NM_010407|Hck|15162|hemopoietic cell kinase	AK150709|Hck|15162|hemopoietic cell kinase	AK150290|Hck|15162|hemopoietic cell kinase	AK152506|Hck|15162|hemopoietic cell kinase	AK149736|Hck|15162|hemopoietic cell kinase	AK165315|Hck|15162|hemopoietic cell kinase	AK159234|Hck|15162|hemopoietic cell kinase	AK155975|Hck|15162|hemopoietic cell kinase	Y00487|Hck|15162|hemopoietic cell kinase	J03023|Hck|15162|hemopoietic cell kinase
mm9_v1_chr10_+_81106380_81106406	0.258738	GLI1..3.p2	AK017778|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr2_-_120178819_120178881	0.258378	GLI1..3.p2	BC007479|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281050|Vps39|269338|vacuolar protein sorting 39 (yeast)	AF281051|Vps39|269338|vacuolar protein sorting 39 (yeast)	AB028844|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK141424|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK038824|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK042253|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK154103|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK170831|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK171008|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK159889|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK160109|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK084743|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_147153|Vps39|269338|vacuolar protein sorting 39 (yeast)	NM_178851|Vps39|269338|vacuolar protein sorting 39 (yeast)	AK140041|Vps39|269338|vacuolar protein sorting 39 (yeast)
mm9_v1_chr19_-_42055588_42055632	0.257746	GLI1..3.p2	BC018614|Mms19|72199|MMS19 (MET18 S. cerevisiae)	BC050817|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK036983|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AF319949|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK011754|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK078688|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK028317|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK030619|Mms19|72199|MMS19 (MET18 S. cerevisiae)	NM_028152|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK087633|Mms19|72199|MMS19 (MET18 S. cerevisiae)	AK010326|Mms19|72199|MMS19 (MET18 S. cerevisiae)
mm9_v1_chr1_-_37597847_37597897	0.257068	GLI1..3.p2	AK155724|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr10_+_84565428_84565600	0.256755	GLI1..3.p2	AK005698|AI597468|103266|expressed sequence AI597468	BC086492|AI597468|103266|expressed sequence AI597468	AK142035|AI597468|103266|expressed sequence AI597468
mm9_v1_chr10_-_78560301_78560348	0.256152	GLI1..3.p2	BC082302|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	AK148309|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	NM_001004362|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene
mm9_v1_chr2_+_28695925_28695978	0.254955	GLI1..3.p2	NM_001033294|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	AK030888|Ddx31|227674|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
mm9_v1_chr4_-_134989653_134989790	0.254932	GLI1..3.p2	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr18_-_68459958_68459986	0.254509	GLI1..3.p2	AK077093|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene	NM_153794|4933403F05Rik|108654|RIKEN cDNA 4933403F05 gene
mm9_v1_chr14_+_35123796_35123914	0.253557	GLI1..3.p2	AK150637|Glud1|14661|glutamate dehydrogenase 1	NM_008133|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr12_+_111685516_111685575	0.253387	GLI1..3.p2	AK129042|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK161855|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr9_-_108363229_108363406	0.253123	GLI1..3.p2	AK157991|Klhdc8b|78267|kelch domain containing 8B	AK087143|Klhdc8b|78267|kelch domain containing 8B	AK154428|Klhdc8b|78267|kelch domain containing 8B
mm9_v1_chr6_-_124719465_124719591	0.253079	GLI1..3.p2	BC009018|Eno2|13807|enolase 2, gamma neuronal	BC031739|Eno2|13807|enolase 2, gamma neuronal	NM_013509|Eno2|13807|enolase 2, gamma neuronal	AK003051|Eno2|13807|enolase 2, gamma neuronal	AK146655|Eno2|13807|enolase 2, gamma neuronal	X52380|Eno2|13807|enolase 2, gamma neuronal	AK131652|Eno2|13807|enolase 2, gamma neuronal
mm9_v1_chr4_-_108874820_108874834	0.25262	GLI1..3.p2	BC023759|Osbpl9|100273|oxysterol binding protein-like 9
mm9_v1_chr16_+_94792513_94792513	0.251479	GLI1..3.p2	NM_001113389|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr4_+_21858472_21858503	0.251212	GLI1..3.p2	AK144924|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	NM_175234|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK081616|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK082464|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene	AK018081|6230409E13Rik|76132|RIKEN cDNA 6230409E13 gene
mm9_v1_chr1_-_95531961_95532109	0.250886	GLI1..3.p2	AF004934|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr6_-_115201866_115201882	0.2497	GLI1..3.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr15_+_99288299_99288391	0.249334	GLI1..3.p2	
mm9_v1_chr7_-_133646767_133646989	0.248807	GLI1..3.p2	BC054483|Atxn2l|233871|ataxin 2-like	NM_183020|Atxn2l|233871|ataxin 2-like	AK155062|Atxn2l|233871|ataxin 2-like	AK084800|Atxn2l|233871|ataxin 2-like
mm9_v1_chr12_+_110784600_110784655	0.248384	GLI1..3.p2	AK032021|Meg3|17263|maternally expressed 3	AK141629|Meg3|17263|maternally expressed 3
mm9_v1_chr5_-_150438856_150438925	0.247536	GLI1..3.p2	AK165046|Hsph1|15505|heat shock 105kDa/110kDa protein 1	AK160824|Hsph1|15505|heat shock 105kDa/110kDa protein 1	NM_013559|Hsph1|15505|heat shock 105kDa/110kDa protein 1
mm9_v1_chr16_+_93832365_93832557	0.246541	GLI1..3.p2	AK172896|Morc3|338467|microrchidia 3	NM_001045529|Morc3|338467|microrchidia 3	BC145705|Morc3|338467|microrchidia 3	AK144885|Morc3|338467|microrchidia 3	AK132226|Morc3|338467|microrchidia 3	BC098072|Morc3|338467|microrchidia 3
mm9_v1_chr9_+_85735986_85736016	0.245098	GLI1..3.p2	AK165597|Tpbg|21983|trophoblast glycoprotein	NM_011627|Tpbg|21983|trophoblast glycoprotein	AK051162|Tpbg|21983|trophoblast glycoprotein
mm9_v1_chr7_+_97591618_97591648	0.2434	GLI1..3.p2	AF408398|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr7_+_107855164_107855207	0.243127	GLI1..3.p2	AK122235|Fam168a|319604|family with sequence similarity 168, member A	AK162512|Fam168a|319604|family with sequence similarity 168, member A	AK046944|Fam168a|319604|family with sequence similarity 168, member A	AK043083|Fam168a|319604|family with sequence similarity 168, member A	BC076580|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr2_+_76208040_76208080	0.243117	GLI1..3.p2	AK140861|Rbm45|241490|RNA binding motif protein 45	AY152391|Rbm45|241490|RNA binding motif protein 45	NM_153405|Rbm45|241490|RNA binding motif protein 45	AK090084|Rbm45|241490|RNA binding motif protein 45	AK080420|Rbm45|241490|RNA binding motif protein 45
mm9_v1_chr17_-_64681166_64681295	0.243033	GLI1..3.p2	AK122282|Pja2|224938|praja 2, RING-H2 motif containing	AK168371|Pja2|224938|praja 2, RING-H2 motif containing	AK144586|Pja2|224938|praja 2, RING-H2 motif containing	NM_001025309|Pja2|224938|praja 2, RING-H2 motif containing	NM_144859|Pja2|224938|praja 2, RING-H2 motif containing	AK164025|Pja2|224938|praja 2, RING-H2 motif containing	AF493070|Pja2|224938|praja 2, RING-H2 motif containing
mm9_v1_chr10_-_105011265_105011266	0.242539	GLI1..3.p2	BC138362|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	BC138363|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr9_+_58100961_58101075	0.242407	GLI1..3.p2	NM_026942|Stoml1|69106|stomatin-like 1	AK045820|Stoml1|69106|stomatin-like 1	BC017536|Stoml1|69106|stomatin-like 1	BC037074|Stoml1|69106|stomatin-like 1	AK148324|Stoml1|69106|stomatin-like 1
mm9_v1_chr1_+_155596555_155596633	0.241845	GLI1..3.p2	AK140815|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	NM_011882|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	BC003873|Rnasel|24014|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm9_v1_chr15_-_27955680_27955732	0.241832	GLI1..3.p2	BC067059|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr1_-_173152548_173152594	0.241455	GLI1..3.p2	AK012264|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr8_-_23235509_23235538	0.241315	GLI1..3.p2	AK165108|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	BC053516|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	AK032672|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	NM_177898|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5	AK054168|Nek5|330721|NIMA (never in mitosis gene a)-related expressed kinase 5
mm9_v1_chr6_+_29222487_29222646	0.240856	GLI1..3.p2	NM_001190461|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	NM_023516|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr9_-_20682520_20682531	0.239785	GLI1..3.p2	AK018113|Angptl6|70726|angiopoietin-like 6
mm9_v1_chr15_+_6658368_6658402	0.23849	GLI1..3.p2	AK029196|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036149|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK036492|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK082586|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK087858|Rictor|78757|RPTOR independent companion of MTOR, complex 2	NM_030168|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY540053|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120903|Rictor|78757|RPTOR independent companion of MTOR, complex 2	BC120904|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK019537|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AK054119|Rictor|78757|RPTOR independent companion of MTOR, complex 2	AY497009|Rictor|78757|RPTOR independent companion of MTOR, complex 2
mm9_v1_chr2_-_104334599_104334605	0.238142	GLI1..3.p2	
mm9_v1_chr7_-_126127713_126127734	0.235689	GLI1..3.p2	AB030197|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B
mm9_v1_chr15_-_75397030_75397077	0.235467	GLI1..3.p2	AK034884|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135689|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chrX_-_148777014_148777028	0.235321	GLI1..3.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chrX_+_8469478_8469488	0.235127	GLI1..3.p2	NM_175327|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr14_+_57021419_57021536	0.234766	GLI1..3.p2	AF190166|Rnf17|30054|ring finger protein 17	AF285585|Rnf17|30054|ring finger protein 17	AY854010|Rnf17|30054|ring finger protein 17	AY854011|Rnf17|30054|ring finger protein 17	NM_001033043|Rnf17|30054|ring finger protein 17	AK136196|Rnf17|30054|ring finger protein 17
mm9_v1_chr16_-_85173978_85173998	0.233494	GLI1..3.p2	AK147543|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr11_-_50729643_50729683	0.233071	GLI1..3.p2	BC057171|Zfp2|22678|zinc finger protein 2	AK042734|Zfp2|22678|zinc finger protein 2	AK141471|Zfp2|22678|zinc finger protein 2	BC089506|Zfp2|22678|zinc finger protein 2	AK131978|Zfp2|22678|zinc finger protein 2	NM_001044697|Zfp2|22678|zinc finger protein 2	NM_001044698|Zfp2|22678|zinc finger protein 2	NM_001044699|Zfp2|22678|zinc finger protein 2	NM_001044700|Zfp2|22678|zinc finger protein 2	AK036776|Zfp2|22678|zinc finger protein 2
mm9_v1_chr2_+_69485227_69485311	0.232431	GLI1..3.p2	AK006743|Bbs5|72569|Bardet-Biedl syndrome 5 (human)	BC061031|Bbs5|72569|Bardet-Biedl syndrome 5 (human)	AK012283|Bbs5|72569|Bardet-Biedl syndrome 5 (human)	NM_028284|Bbs5|72569|Bardet-Biedl syndrome 5 (human)
mm9_v1_chr19_-_5366324_5366346	0.231958	GLI1..3.p2	AK010257|Banf1|23825|barrier to autointegration factor 1	NM_001038231|Banf1|23825|barrier to autointegration factor 1
mm9_v1_chr4_+_133228633_133228644	0.23173	GLI1..3.p2	AK006675|1700041L08Rik|73315|RIKEN cDNA 1700041L08 gene
mm9_v1_chr15_-_31460752_31460820	0.231716	GLI1..3.p2	AK132461|March6|223455|membrane-associated ring finger (C3HC4) 6	AK089827|March6|223455|membrane-associated ring finger (C3HC4) 6	NM_172606|March6|223455|membrane-associated ring finger (C3HC4) 6
mm9_v1_chr19_+_5490454_5490570	0.231634	GLI1..3.p2	NM_007687|Cfl1|12631|cofilin 1, non-muscle	AK020471|Cfl1|12631|cofilin 1, non-muscle	D00472|Cfl1|12631|cofilin 1, non-muscle	AK088633|Cfl1|12631|cofilin 1, non-muscle	AK088793|Cfl1|12631|cofilin 1, non-muscle	AK050651|Cfl1|12631|cofilin 1, non-muscle	AK167795|Cfl1|12631|cofilin 1, non-muscle	AK013943|Cfl1|12631|cofilin 1, non-muscle	BC058726|Cfl1|12631|cofilin 1, non-muscle	BC094357|Cfl1|12631|cofilin 1, non-muscle	BC046225|Cfl1|12631|cofilin 1, non-muscle
mm9_v1_chr2_-_121097017_121097133	0.230569	GLI1..3.p2	AK045851|Trp53bp1|27223|transformation related protein 53 binding protein 1	BC079906|Trp53bp1|27223|transformation related protein 53 binding protein 1	AK045077|Trp53bp1|27223|transformation related protein 53 binding protein 1	AK148123|Trp53bp1|27223|transformation related protein 53 binding protein 1	BC037378|Trp53bp1|27223|transformation related protein 53 binding protein 1	NM_013735|Trp53bp1|27223|transformation related protein 53 binding protein 1
mm9_v1_chr11_-_64976408_64976473	0.229691	GLI1..3.p2	BC056366|Arhgap44|216831|Rho GTPase activating protein 44	BC059911|Arhgap44|216831|Rho GTPase activating protein 44	NM_001099288|Arhgap44|216831|Rho GTPase activating protein 44	NM_175003|Arhgap44|216831|Rho GTPase activating protein 44
mm9_v1_chr11_+_84339151_84339188	0.228416	GLI1..3.p2	AK018772|1500016L03Rik|78365|RIKEN cDNA 1500016L03 gene
mm9_v1_chr11_+_60166826_60166909	0.227806	GLI1..3.p2	AK047468|Lrrc48|74665|leucine rich repeat containing 48	AK049695|Lrrc48|74665|leucine rich repeat containing 48	BC018412|Lrrc48|74665|leucine rich repeat containing 48	AK015430|Lrrc48|74665|leucine rich repeat containing 48	NM_029044|Lrrc48|74665|leucine rich repeat containing 48
mm9_v1_chr9_+_103014445_103014461	0.22696	GLI1..3.p2	AK035893|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr8_+_12757011_12757296	0.226549	GLI1..3.p2	AK147497|Atp11a|50770|ATPase, class VI, type 11A	NM_015804|Atp11a|50770|ATPase, class VI, type 11A	AF156551|Atp11a|50770|ATPase, class VI, type 11A	BC145399|Atp11a|50770|ATPase, class VI, type 11A	BC145400|Atp11a|50770|ATPase, class VI, type 11A	BC138715|Atp11a|50770|ATPase, class VI, type 11A
mm9_v1_chr1_-_66864031_66864049	0.226542	GLI1..3.p2	BC141036|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene
mm9_v1_chr7_-_150646883_150646954	0.225118	GLI1..3.p2	U22399|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	BC005412|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK077844|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	AK132278|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_001161624|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)	NM_009876|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr19_-_16342088_16342126	0.22507	GLI1..3.p2	
mm9_v1_chr9_-_110526866_110526924	0.224101	GLI1..3.p2	BC039808|Nradd|67169|neurotrophin receptor associated death domain	AK160222|Nradd|67169|neurotrophin receptor associated death domain	BC069856|Nradd|67169|neurotrophin receptor associated death domain	NM_026012|Nradd|67169|neurotrophin receptor associated death domain
mm9_v1_chr7_-_63274920_63274958	0.223942	GLI1..3.p2	AK166325|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	AY098645|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	BC055828|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	NM_153578|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	AK046619|Nipa1|233280|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
mm9_v1_chr19_+_18706439_18706451	0.223833	GLI1..3.p2	AK169962|BC016495|225994|cDNA sequence BC016495
mm9_v1_chr16_-_17405946_17405956	0.2237	GLI1..3.p2	AK134904|Pi4ka|224020|phosphatidylinositol 4-kinase, catalytic, alpha polypeptide
mm9_v1_chr11_-_118216689_118216724	0.223659	GLI1..3.p2	NM_011594|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr4_-_43023359_43023400	0.223553	GLI1..3.p2	BC050890|Fancg|60534|Fanconi anemia, complementation group G
mm9_v1_chr7_-_4796261_4796301	0.222198	GLI1..3.p2	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr11_-_68666432_68666614	0.22208	GLI1..3.p2	AK011168|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	AF290472|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	AK146029|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)	BC046796|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr2_-_66472709_66472813	0.221766	GLI1..3.p2	BC158048|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	BC172147|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	AK142068|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha
mm9_v1_chr7_+_5008311_5008341	0.221697	GLI1..3.p2	NM_146178|Ccdc106|232821|coiled-coil domain containing 106	AB041804|Ccdc106|232821|coiled-coil domain containing 106
mm9_v1_chr6_-_88824037_88824037	0.221411	GLI1..3.p2	BC033384|Podxl2|319655|podocalyxin-like 2	NM_176973|Podxl2|319655|podocalyxin-like 2
mm9_v1_chr9_+_108686107_108686181	0.2214	GLI1..3.p2	AK005166|Ip6k2|76500|inositol hexaphosphate kinase 2	AK050593|Ip6k2|76500|inositol hexaphosphate kinase 2	AK057615|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr2_+_22924561_22924686	0.221292	GLI1..3.p2	NM_001102437|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	NM_001102438|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	AK147839|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC053518|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC035202|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr15_-_79844427_79844445	0.221252	GLI1..3.p2	AF162784|Pdgfb|18591|platelet derived growth factor, B polypeptide
mm9_v1_chr15_+_88890519_88890533	0.220982	GLI1..3.p2	DQ093579|Panx2|406218|pannexin 2
mm9_v1_chr9_+_21807437_21807509	0.220876	GLI1..3.p2	AK153931|Prkcsh|19089|protein kinase C substrate 80K-H	AK159705|Prkcsh|19089|protein kinase C substrate 80K-H	AK137661|Prkcsh|19089|protein kinase C substrate 80K-H	NM_008925|Prkcsh|19089|protein kinase C substrate 80K-H	U92794|Prkcsh|19089|protein kinase C substrate 80K-H	BC009816|Prkcsh|19089|protein kinase C substrate 80K-H
mm9_v1_chr4_+_45354940_45354977	0.220688	GLI1..3.p2	AK170534|Dcaf10|242418|DDB1 and CUL4 associated factor 10	AK165246|Dcaf10|242418|DDB1 and CUL4 associated factor 10	NM_153167|Dcaf10|242418|DDB1 and CUL4 associated factor 10
mm9_v1_chr4_-_128798481_128798555	0.22035	GLI1..3.p2	BC049607|Hpca|15444|hippocalcin	NM_010471|Hpca|15444|hippocalcin	AK002992|Hpca|15444|hippocalcin
mm9_v1_chr1_-_156946739_156946767	0.22009	GLI1..3.p2	BC051986|Ier5|15939|immediate early response 5	BC021013|Ier5|15939|immediate early response 5	BC037147|Ier5|15939|immediate early response 5	AK146609|Ier5|15939|immediate early response 5	AK150461|Ier5|15939|immediate early response 5	AF079527|Ier5|15939|immediate early response 5	NM_010500|Ier5|15939|immediate early response 5
mm9_v1_chr7_+_97591287_97591327	0.219672	GLI1..3.p2	NM_145151|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr15_-_76342209_76342361	0.219293	GLI1..3.p2	AB057816|Dgat1|13350|diacylglycerol O-acyltransferase 1	BC003717|Dgat1|13350|diacylglycerol O-acyltransferase 1	NM_010046|Dgat1|13350|diacylglycerol O-acyltransferase 1
mm9_v1_chr6_-_85911593_85911675	0.218221	GLI1..3.p2	BC067028|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK040232|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK079991|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK081629|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK088941|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	NM_028099|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
mm9_v1_chr12_+_109648864_109648871	0.217587	GLI1..3.p2	BC059839|Eml1|68519|echinoderm microtubule associated protein like 1	NM_001043336|Eml1|68519|echinoderm microtubule associated protein like 1	BC125289|Eml1|68519|echinoderm microtubule associated protein like 1	BC144757|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr1_-_166387998_166388161	0.217215	GLI1..3.p2	X16646|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC094070|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC027319|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK005071|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK140862|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK160405|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK161891|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr7_+_29649467_29649473	0.217209	GLI1..3.p2	AK009151|Lgals7|16858|lectin, galactose binding, soluble 7	AK003153|Lgals7|16858|lectin, galactose binding, soluble 7	AK008773|Lgals7|16858|lectin, galactose binding, soluble 7
mm9_v1_chr4_-_136391849_136391926	0.216525	GLI1..3.p2	BC043088|Ephb2|13844|Eph receptor B2	NM_010142|Ephb2|13844|Eph receptor B2	BC062924|Ephb2|13844|Eph receptor B2	AK017630|Ephb2|13844|Eph receptor B2	L25890|Ephb2|13844|Eph receptor B2
mm9_v1_chr11_-_98190774_98191090	0.215479	GLI1..3.p2	D83507|Neurod2|18013|neurogenic differentiation 2	BC058965|Neurod2|18013|neurogenic differentiation 2	NM_010895|Neurod2|18013|neurogenic differentiation 2	U58471|Neurod2|18013|neurogenic differentiation 2	AK158767|Neurod2|18013|neurogenic differentiation 2
mm9_v1_chr5_-_135554038_135554160	0.215126	GLI1..3.p2	BC044789|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK158287|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AK090181|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY081953|Vps37d|194309|vacuolar protein sorting 37D (yeast)	AY352519|Vps37d|194309|vacuolar protein sorting 37D (yeast)	NM_177574|Vps37d|194309|vacuolar protein sorting 37D (yeast)
mm9_v1_chr2_-_163744663_163744747	0.215095	GLI1..3.p2	AK134613|Rims4|241770|regulating synaptic membrane exocytosis 4
mm9_v1_chr11_-_97605846_97606123	0.214746	GLI1..3.p2	AY050219|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK170392|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK037013|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK171497|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK089414|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	BC047282|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	NM_054051|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta	AK146559|Pip4k2b|108083|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm9_v1_chr4_-_137881771_137881842	0.214173	GLI1..3.p2	AK215426|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr2_+_144425704_144425774	0.213683	GLI1..3.p2	BC026537|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK003594|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK011917|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK010822|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK002246|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)	AK017565|Dtd1|66044|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)
mm9_v1_chr5_-_121995889_121995900	0.212931	GLI1..3.p2	AF039840|Mapkapk5|17165|MAP kinase-activated protein kinase 5	NM_010765|Mapkapk5|17165|MAP kinase-activated protein kinase 5
mm9_v1_chr6_+_38613031_38613110	0.212468	GLI1..3.p2	NM_001101507|Clec2l|665180|C-type lectin domain family, member L
mm9_v1_chr13_+_8202111_8202186	0.212406	GLI1..3.p2	AK134964|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK051460|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK043249|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139079|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK139273|Adarb2|94191|adenosine deaminase, RNA-specific, B2	NM_052977|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC059822|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK046083|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK033916|Adarb2|94191|adenosine deaminase, RNA-specific, B2	AK045538|Adarb2|94191|adenosine deaminase, RNA-specific, B2	BC052426|Adarb2|94191|adenosine deaminase, RNA-specific, B2
mm9_v1_chr1_-_75476031_75476045	0.212083	GLI1..3.p2	NM_001001565|Chpf|74241|chondroitin polymerizing factor	NM_001001566|Chpf|74241|chondroitin polymerizing factor
mm9_v1_chr11_-_54674080_54674223	0.211488	GLI1..3.p2	NM_029327|Lyrm7|75530|LYR motif containing 7	BC139403|Lyrm7|75530|LYR motif containing 7	BC139406|Lyrm7|75530|LYR motif containing 7
mm9_v1_chr12_+_45370145_45370261	0.211105	GLI1..3.p2	AK004621|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK163211|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK029616|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK168475|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK145776|Pnpla8|67452|patatin-like phospholipase domain containing 8	AB044139|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr7_-_28459566_28459642	0.210938	GLI1..3.p2	AK053830|Map3k10|269881|mitogen-activated protein kinase kinase kinase 10	NM_001081292|Map3k10|269881|mitogen-activated protein kinase kinase kinase 10
mm9_v1_chr16_+_20589654_20589675	0.210721	GLI1..3.p2	AK141799|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_001144953|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	NM_182636|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr11_+_74644479_74644499	0.210716	GLI1..3.p2	Y07609|Mnt|17428|max binding protein	BC054534|Mnt|17428|max binding protein
mm9_v1_chr11_+_106650565_106650638	0.210605	GLI1..3.p2	NM_001166685|Ccdc45|320162|coiled-coil domain containing 45	NM_177088|Ccdc45|320162|coiled-coil domain containing 45	AK076400|Ccdc45|320162|coiled-coil domain containing 45	AK165351|Ccdc45|320162|coiled-coil domain containing 45	BC116308|Ccdc45|320162|coiled-coil domain containing 45	BC116309|Ccdc45|320162|coiled-coil domain containing 45	BC090675|Ccdc45|320162|coiled-coil domain containing 45	AK052705|Ccdc45|320162|coiled-coil domain containing 45
mm9_v1_chr1_+_12682510_12682540	0.209215	GLI1..3.p2	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr19_+_42245036_42245077	0.208722	GLI1..3.p2	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr15_-_80094668_80094751	0.208676	GLI1..3.p2	BC065381|Rps19bp1|66538|ribosomal protein S19 binding protein 1	AK075974|Rps19bp1|66538|ribosomal protein S19 binding protein 1	AK010954|Rps19bp1|66538|ribosomal protein S19 binding protein 1	BC038691|Rps19bp1|66538|ribosomal protein S19 binding protein 1	BC050115|Rps19bp1|66538|ribosomal protein S19 binding protein 1	AB233218|Rps19bp1|66538|ribosomal protein S19 binding protein 1	NM_175109|Rps19bp1|66538|ribosomal protein S19 binding protein 1
mm9_v1_chr14_-_52899101_52899219	0.208501	GLI1..3.p2	AK160249|Rab2b|76338|RAB2B, member RAS oncogene family
mm9_v1_chr10_+_127848744_127848813	0.208226	GLI1..3.p2	AK031657|Rnf41|67588|ring finger protein 41	AK034551|Rnf41|67588|ring finger protein 41	AK044103|Rnf41|67588|ring finger protein 41	AK032848|Rnf41|67588|ring finger protein 41	AK028551|Rnf41|67588|ring finger protein 41	AK077466|Rnf41|67588|ring finger protein 41
mm9_v1_chr3_-_84283349_84283412	0.208087	GLI1..3.p2	BC137632|Fhdc1|229474|FH2 domain containing 1	AK173244|Fhdc1|229474|FH2 domain containing 1
mm9_v1_chr11_+_98667577_98667599	0.208081	GLI1..3.p2	AK031902|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr16_+_20621467_20621606	0.207972	GLI1..3.p2	
mm9_v1_chr13_+_56623832_56623890	0.207756	GLI1..3.p2	AK079800|Fbxl21|213311|F-box and leucine-rich repeat protein 21	AK035290|Fbxl21|213311|F-box and leucine-rich repeat protein 21	AK085598|Fbxl21|213311|F-box and leucine-rich repeat protein 21	NM_178674|Fbxl21|213311|F-box and leucine-rich repeat protein 21	AK046196|Fbxl21|213311|F-box and leucine-rich repeat protein 21	BC138940|Fbxl21|213311|F-box and leucine-rich repeat protein 21	BC138941|Fbxl21|213311|F-box and leucine-rich repeat protein 21
mm9_v1_chr14_+_34767188_34767245	0.207327	GLI1..3.p2	BC083133|Rbp3|19661|retinol binding protein 3, interstitial	BC017610|Rbp3|19661|retinol binding protein 3, interstitial	NM_015745|Rbp3|19661|retinol binding protein 3, interstitial	BC040282|Rbp3|19661|retinol binding protein 3, interstitial	BC042480|Rbp3|19661|retinol binding protein 3, interstitial
mm9_v1_chr6_+_48345584_48345680	0.207238	GLI1..3.p2	AK040525|Krba1|77827|KRAB-A domain containing 1	NM_133922|Krba1|77827|KRAB-A domain containing 1	AB041543|Krba1|77827|KRAB-A domain containing 1	AK158136|4930447G04Rik|74869|RIKEN cDNA 4930447G04 gene	AK128931|Krba1|77827|KRAB-A domain containing 1	AK173281|Krba1|77827|KRAB-A domain containing 1	BC066816|Krba1|77827|KRAB-A domain containing 1
mm9_v1_chr15_+_9001154_9001214	0.206829	GLI1..3.p2	BC115776|1110020G09Rik|68646|RIKEN cDNA 1110020G09 gene
mm9_v1_chr5_+_147644594_147644770	0.206679	GLI1..3.p2	AK008457|Rpl21|19933|ribosomal protein L21	AK018480|Rpl21|19933|ribosomal protein L21	BC086905|Rpl21|19933|ribosomal protein L21	BC086935|Rpl21|19933|ribosomal protein L21	AK002940|Rpl21|19933|ribosomal protein L21	BC086904|Rpl21|19933|ribosomal protein L21	BC089582|Rpl21|19933|ribosomal protein L21	AK146440|Rpl21|19933|ribosomal protein L21	BC106116|Rpl21|19933|ribosomal protein L21	BC138299|Rpl21|19933|ribosomal protein L21	BC138300|Rpl21|19933|ribosomal protein L21	BC094410|Rpl21|19933|ribosomal protein L21	BC096404|Rpl21|19933|ribosomal protein L21	U93863|Rpl21|19933|ribosomal protein L21	BC090256|Rpl21|19933|ribosomal protein L21	AK168998|Rpl21|19933|ribosomal protein L21
mm9_v1_chr9_+_81525964_81526022	0.206185	GLI1..3.p2	AK162636|D430036J16Rik|319405|RIKEN cDNA D430036J16 gene
mm9_v1_chr6_-_136123091_136123161	0.204855	GLI1..3.p2	AK013569|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm9_v1_chr11_-_94565812_94565812	0.204601	GLI1..3.p2	AK082500|Gm11541|432589|predicted gene 11541	BC147833|Gm11541|432589|predicted gene 11541	BC147838|Gm11541|432589|predicted gene 11541	NM_001007584|Gm11541|432589|predicted gene 11541
mm9_v1_chr15_-_89259756_89259902	0.204141	GLI1..3.p2	BC068195|Chkb|12651|choline kinase beta	AK170077|Chkb|12651|choline kinase beta
mm9_v1_chr13_-_59658585_59658681	0.203762	GLI1..3.p2	BC060633|Agtpbp1|67269|ATP/GTP binding protein 1	AK133215|Agtpbp1|67269|ATP/GTP binding protein 1	AF219141|Agtpbp1|67269|ATP/GTP binding protein 1	AK132695|Agtpbp1|67269|ATP/GTP binding protein 1	AK170046|Agtpbp1|67269|ATP/GTP binding protein 1	AK051467|Agtpbp1|67269|ATP/GTP binding protein 1	BC048468|Agtpbp1|67269|ATP/GTP binding protein 1	AK015394|Agtpbp1|67269|ATP/GTP binding protein 1	NM_001048008|Agtpbp1|67269|ATP/GTP binding protein 1	NM_023328|Agtpbp1|67269|ATP/GTP binding protein 1
mm9_v1_chr15_-_76701864_76701885	0.203672	GLI1..3.p2	BC059071|Zfp251|71591|zinc finger protein 251	NM_001007568|Zfp251|71591|zinc finger protein 251
mm9_v1_chr9_-_67680136_67680136	0.203144	GLI1..3.p2	NM_001163143|C2cd4a|244911|C2 calcium-dependent domain containing 4A
mm9_v1_chr2_-_104334610_104334646	0.202445	GLI1..3.p2	NM_001145824|Hipk3|15259|homeodomain interacting protein kinase 3	NM_010434|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr1_+_180336011_180336163	0.202181	GLI1..3.p2	BC025062|Efcab2|68226|EF-hand calcium binding domain 2	NM_026626|Efcab2|68226|EF-hand calcium binding domain 2	AK018894|Efcab2|68226|EF-hand calcium binding domain 2	AK010880|Efcab2|68226|EF-hand calcium binding domain 2
mm9_v1_chr11_-_102331042_102331196	0.201525	GLI1..3.p2	AK158443|Itga2b|16399|integrin alpha 2b	BC120493|Itga2b|16399|integrin alpha 2b	BC137570|Itga2b|16399|integrin alpha 2b	AK157012|Itga2b|16399|integrin alpha 2b	AF166384|Itga2b|16399|integrin alpha 2b	AF170316|Itga2b|16399|integrin alpha 2b	AK142289|Itga2b|16399|integrin alpha 2b	AK156872|Itga2b|16399|integrin alpha 2b	AK154619|Itga2b|16399|integrin alpha 2b	NM_010575|Itga2b|16399|integrin alpha 2b
mm9_v1_chr16_+_10545494_10545538	0.201505	GLI1..3.p2	AK089327|Clec16a|74374|C-type lectin domain family 16, member A	AK156927|Clec16a|74374|C-type lectin domain family 16, member A	AK170754|Clec16a|74374|C-type lectin domain family 16, member A	AK171134|Clec16a|74374|C-type lectin domain family 16, member A	BC138907|Clec16a|74374|C-type lectin domain family 16, member A	BC138909|Clec16a|74374|C-type lectin domain family 16, member A
mm9_v1_chr2_+_38860784_38860790	0.201446	GLI1..3.p2	AK043301|Wdr38|76646|WD repeat domain 38
mm9_v1_chr2_-_166888514_166888514	0.201333	GLI1..3.p2	AK147564|Znfx1|98999|zinc finger, NFX1-type containing 1	AK147652|Znfx1|98999|zinc finger, NFX1-type containing 1	NM_001033196|Znfx1|98999|zinc finger, NFX1-type containing 1
mm9_v1_chr7_+_87406066_87406184	0.199891	GLI1..3.p2	NM_031375|Ngrn|83485|neugrin, neurite outgrowth associated	AK083330|Ngrn|83485|neugrin, neurite outgrowth associated	AK144756|Ngrn|83485|neugrin, neurite outgrowth associated	BC004034|Ngrn|83485|neugrin, neurite outgrowth associated	AK146059|Ngrn|83485|neugrin, neurite outgrowth associated	AB047544|Ngrn|83485|neugrin, neurite outgrowth associated
mm9_v1_chr4_-_151235758_151235857	0.199728	GLI1..3.p2	AK076589|Camta1|100072|calmodulin binding transcription activator 1	BC150740|Camta1|100072|calmodulin binding transcription activator 1	AK034038|Camta1|100072|calmodulin binding transcription activator 1	AK144150|Camta1|100072|calmodulin binding transcription activator 1	AK009988|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr4_-_151235861_151235879	0.199276	GLI1..3.p2	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr11_+_59652991_59653017	0.199146	GLI1..3.p2	AK008226|Nt5m|103850|5',3'-nucleotidase, mitochondrial
mm9_v1_chr2_+_4897196_4897196	0.198938	GLI1..3.p2	EF529510|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr15_-_84388245_84388282	0.198444	GLI1..3.p2	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr6_-_90732001_90732074	0.198303	GLI1..3.p2	AK053845|E130314K07Rik|320483|RIKEN cDNA E130314K07 gene	AK083777|E130314K07Rik|320483|RIKEN cDNA E130314K07 gene
mm9_v1_chr8_+_86590718_86590827	0.197968	GLI1..3.p2	AK147790|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK036208|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK044607|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	NM_009055|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	BC057018|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	AK083571|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)	X76088|Rfx1|19724|regulatory factor X, 1 (influences HLA class II expression)
mm9_v1_chr2_-_104334276_104334479	0.197888	GLI1..3.p2	BC131663|Hipk3|15259|homeodomain interacting protein kinase 3	BC131664|Hipk3|15259|homeodomain interacting protein kinase 3	AF077660|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr7_+_115077035_115077035	0.197748	GLI1..3.p2	BC148218|Olfr473|258771|olfactory receptor 473	NM_146775|Olfr473|258771|olfactory receptor 473
mm9_v1_chr11_-_108205199_108205207	0.197602	GLI1..3.p2	AK147084|Prkca|18750|protein kinase C, alpha	NM_011101|Prkca|18750|protein kinase C, alpha
mm9_v1_chr3_+_124023954_124024027	0.197569	GLI1..3.p2	NM_146140|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK052946|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK048118|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK083053|Tram1l1|229801|translocation associated membrane protein 1-like 1	AK044115|Tram1l1|229801|translocation associated membrane protein 1-like 1	BC024829|Tram1l1|229801|translocation associated membrane protein 1-like 1	BC027120|Tram1l1|229801|translocation associated membrane protein 1-like 1
mm9_v1_chr7_-_89079335_89079355	0.197483	GLI1..3.p2	AK045542|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	NM_013886|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr16_+_17561977_17562125	0.197406	GLI1..3.p2	NM_001159561|P2rx6|18440|purinergic receptor P2X, ligand-gated ion channel, 6	NM_011028|P2rx6|18440|purinergic receptor P2X, ligand-gated ion channel, 6	AK054195|P2rx6|18440|purinergic receptor P2X, ligand-gated ion channel, 6	AB010883|P2rx6|18440|purinergic receptor P2X, ligand-gated ion channel, 6	AK081308|P2rx6|18440|purinergic receptor P2X, ligand-gated ion channel, 6	BC117713|P2rx6|18440|purinergic receptor P2X, ligand-gated ion channel, 6	AK138541|P2rx6|18440|purinergic receptor P2X, ligand-gated ion channel, 6
mm9_v1_chr5_-_23857421_23857489	0.197371	GLI1..3.p2	AF012868|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2	NM_013569|Kcnh2|16511|potassium voltage-gated channel, subfamily H (eag-related), member 2
mm9_v1_chr13_-_55464135_55464143	0.19734	GLI1..3.p2	BC055327|Lman2|66890|lectin, mannose-binding 2	NM_025828|Lman2|66890|lectin, mannose-binding 2
mm9_v1_chr1_-_16609325_16609423	0.196921	GLI1..3.p2	AK077997|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	BC020124|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK082233|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	NM_025773|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK042870|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK044463|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050679|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK015348|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK046086|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)	AK050923|Ube2w|66799|ubiquitin-conjugating enzyme E2W (putative)
mm9_v1_chr13_+_73741384_73741748	0.19689	GLI1..3.p2	AK032295|Clptm1l|218335|CLPTM1-like	AK048357|Clptm1l|218335|CLPTM1-like	AK156203|Clptm1l|218335|CLPTM1-like	AK165939|Clptm1l|218335|CLPTM1-like	BC026562|Clptm1l|218335|CLPTM1-like	NM_146047|Clptm1l|218335|CLPTM1-like
mm9_v1_chr2_-_118305356_118305444	0.196603	GLI1..3.p2	M29264|Srp14|20813|signal recognition particle 14	AK156845|Srp14|20813|signal recognition particle 14	AK167821|Srp14|20813|signal recognition particle 14	BC021537|Srp14|20813|signal recognition particle 14	AK168144|Srp14|20813|signal recognition particle 14	AK019310|Srp14|20813|signal recognition particle 14	NM_009273|Srp14|20813|signal recognition particle 14
mm9_v1_chr14_-_122138082_122138150	0.195161	GLI1..3.p2	BC158050|Dock9|105445|dedicator of cytokinesis 9	AK122431|Dock9|105445|dedicator of cytokinesis 9	NM_001128307|Dock9|105445|dedicator of cytokinesis 9	NM_001128308|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr13_-_55671276_55671335	0.194475	GLI1..3.p2	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr12_+_32008372_32008419	0.194157	GLI1..3.p2	AK141833|Lamb1|16777|laminin B1
mm9_v1_chr8_+_12915892_12915957	0.19399	GLI1..3.p2	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr7_+_129210847_129210947	0.193196	GLI1..3.p2	AK017851|Ubfd1|28018|ubiquitin family domain containing 1
mm9_v1_chr15_-_81560283_81560301	0.192408	GLI1..3.p2	BC071200|Rangap1|19387|RAN GTPase activating protein 1	AK159009|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr3_+_57539969_57539996	0.19237	GLI1..3.p2	NM_001113413|Rnf13|24017|ring finger protein 13	NM_011883|Rnf13|24017|ring finger protein 13	AK140682|Rnf13|24017|ring finger protein 13	AK008009|Rnf13|24017|ring finger protein 13	AK034135|Rnf13|24017|ring finger protein 13
mm9_v1_chr15_-_39775498_39775574	0.192208	GLI1..3.p2	BC058345|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr11_-_101087730_101087737	0.191941	GLI1..3.p2	AK154565|Ezh1|14055|enhancer of zeste homolog 1 (Drosophila)
mm9_v1_chr4_-_133228358_133228512	0.191786	GLI1..3.p2	AK047322|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	BC055060|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V	AK080858|Pigv|230801|phosphatidylinositol glycan anchor biosynthesis, class V
mm9_v1_chr1_+_62749850_62750115	0.191442	GLI1..3.p2	NM_001077403|Nrp2|18187|neuropilin 2	NM_001077404|Nrp2|18187|neuropilin 2	NM_001077405|Nrp2|18187|neuropilin 2	NM_001077406|Nrp2|18187|neuropilin 2	NM_001077407|Nrp2|18187|neuropilin 2	NM_010939|Nrp2|18187|neuropilin 2	AK149643|Nrp2|18187|neuropilin 2	AK051873|Nrp2|18187|neuropilin 2
mm9_v1_chr1_+_36569141_36569293	0.190563	GLI1..3.p2	BC080275|Cnnm3|94218|cyclin M3
mm9_v1_chr5_-_115750649_115750671	0.190274	GLI1..3.p2	BC085492|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr7_-_4610179_4610267	0.189227	GLI1..3.p2	BC141039|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr12_+_60167873_60167985	0.188677	GLI1..3.p2	NM_008891|Pnn|18949|pinin	AK051640|Pnn|18949|pinin	AK009055|Pnn|18949|pinin	AK085295|Pnn|18949|pinin	AK050669|Pnn|18949|pinin	AK157587|Pnn|18949|pinin	AK028219|Pnn|18949|pinin	AK161109|Pnn|18949|pinin	AK160616|Pnn|18949|pinin	BC132571|Pnn|18949|pinin	BC138014|Pnn|18949|pinin	Y08701|Pnn|18949|pinin	AK030978|Pnn|18949|pinin
mm9_v1_chr8_-_73030573_73030639	0.188669	GLI1..3.p2	AK160511|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene	AK010635|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene	AK013181|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene	NM_025577|2810428I15Rik|66462|RIKEN cDNA 2810428I15 gene
mm9_v1_chr2_+_119722957_119723040	0.188602	GLI1..3.p2	AK046252|Mga|29808|MAX gene associated	NM_001164274|Mga|29808|MAX gene associated	NM_013720|Mga|29808|MAX gene associated	AK162302|Mga|29808|MAX gene associated	AK032570|Mga|29808|MAX gene associated	AK012050|Mga|29808|MAX gene associated	AK139919|Mga|29808|MAX gene associated	AK172962|Mga|29808|MAX gene associated
mm9_v1_chr9_-_81526158_81526221	0.188538	GLI1..3.p2	NM_010482|Htr1b|15551|5-hydroxytryptamine (serotonin) receptor 1B	BC119129|Htr1b|15551|5-hydroxytryptamine (serotonin) receptor 1B	BC131951|Htr1b|15551|5-hydroxytryptamine (serotonin) receptor 1B
mm9_v1_chr11_-_106650166_106650257	0.1882	GLI1..3.p2	AK166698|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr16_+_20717922_20717989	0.187526	GLI1..3.p2	BC092087|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H
mm9_v1_chr5_+_126012784_126012787	0.187088	GLI1..3.p2	NM_001190352|Tmem132b|208151|transmembrane protein 132B
mm9_v1_chr1_+_75518349_75518365	0.186883	GLI1..3.p2	AK171989|Stk11ip|71728|serine/threonine kinase 11 interacting protein	BC042403|Stk11ip|71728|serine/threonine kinase 11 interacting protein
mm9_v1_chr2_-_150493936_150493975	0.186423	GLI1..3.p2	AK173275|Acss1|68738|acyl-CoA synthetase short-chain family member 1	AK172470|Acss1|68738|acyl-CoA synthetase short-chain family member 1	AK088244|Acss1|68738|acyl-CoA synthetase short-chain family member 1	AK172412|Acss1|68738|acyl-CoA synthetase short-chain family member 1	AB046742|Acss1|68738|acyl-CoA synthetase short-chain family member 1	AK158119|Acss1|68738|acyl-CoA synthetase short-chain family member 1	AK146568|Acss1|68738|acyl-CoA synthetase short-chain family member 1	NM_080575|Acss1|68738|acyl-CoA synthetase short-chain family member 1
mm9_v1_chr17_+_34324700_34324824	0.186212	GLI1..3.p2	AK162731|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	AK151481|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	AK171363|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	AK152953|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	U60018|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	U60019|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	U60020|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	U60021|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	U60022|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	U60023|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr7_+_28516407_28516529	0.185891	GLI1..3.p2	AK149305|Zfp60|22718|zinc finger protein 60	NM_009560|Zfp60|22718|zinc finger protein 60	NM_029531|Zfp60|22718|zinc finger protein 60	AK044869|Zfp60|22718|zinc finger protein 60	AK028717|Zfp60|22718|zinc finger protein 60
mm9_v1_chr4_-_117564594_117564651	0.185861	GLI1..3.p2	BC031124|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK018638|Dph2|67728|DPH2 homolog (S. cerevisiae)	NM_026344|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK011199|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK051026|Dph2|67728|DPH2 homolog (S. cerevisiae)	AK080747|Dph2|67728|DPH2 homolog (S. cerevisiae)	BC014746|Dph2|67728|DPH2 homolog (S. cerevisiae)
mm9_v1_chr9_-_107775031_107775194	0.185748	GLI1..3.p2	AK145612|Rbm6|19654|RNA binding motif protein 6	AK078712|Rbm6|19654|RNA binding motif protein 6	AK030451|Rbm6|19654|RNA binding motif protein 6	AK077899|Rbm6|19654|RNA binding motif protein 6	AK134164|Rbm6|19654|RNA binding motif protein 6	AK081846|Rbm6|19654|RNA binding motif protein 6	AK164432|Rbm6|19654|RNA binding motif protein 6	AK029954|Rbm6|19654|RNA binding motif protein 6	NM_011251|Rbm6|19654|RNA binding motif protein 6	NM_029169|Rbm6|19654|RNA binding motif protein 6	BC026129|Rbm6|19654|RNA binding motif protein 6
mm9_v1_chr14_+_52898820_52898820	0.185354	GLI1..3.p2	NM_023434|Tox4|268741|TOX high mobility group box family member 4
mm9_v1_chr16_+_20590162_20590218	0.184931	GLI1..3.p2	AK048916|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	BC052055|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr3_-_127111869_127111953	0.184714	GLI1..3.p2	AK047866|Ank2|109676|ankyrin 2, brain	AK084070|Ank2|109676|ankyrin 2, brain	AK036179|Ank2|109676|ankyrin 2, brain	AK166115|Ank2|109676|ankyrin 2, brain	AK046947|Ank2|109676|ankyrin 2, brain
mm9_v1_chr3_-_131006068_131006148	0.184422	GLI1..3.p2	AK142740|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK018458|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK041477|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	NM_027816|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1
mm9_v1_chr2_+_119177025_119177036	0.184325	GLI1..3.p2	AK007378|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	BC025169|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr11_+_3795221_3795283	0.184277	GLI1..3.p2	NM_173745|Dusp18|75219|dual specificity phosphatase 18	AK079664|Dusp18|75219|dual specificity phosphatase 18	BC020036|Dusp18|75219|dual specificity phosphatase 18	AK015917|Dusp18|75219|dual specificity phosphatase 18	AK081916|Dusp18|75219|dual specificity phosphatase 18
mm9_v1_chr6_+_4853319_4853431	0.184201	GLI1..3.p2	AB091828|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	NM_181595|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	AK158559|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A	BC053748|Ppp1r9a|243725|protein phosphatase 1, regulatory (inhibitor) subunit 9A
mm9_v1_chr18_-_34879873_34880040	0.184072	GLI1..3.p2	AF020305|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AB008833|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AF041842|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AF036163|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AF051766|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	Y15110|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	AK046542|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	BC066202|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3	NM_010280|Gfra3|14587|glial cell line derived neurotrophic factor family receptor alpha 3
mm9_v1_chr14_-_56340701_56340743	0.183428	GLI1..3.p2	AK181036|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr5_+_148000271_148000302	0.183155	GLI1..3.p2	NM_008178|Gsx1|14842|GS homeobox 1	U21224|Gsx1|14842|GS homeobox 1	BC137769|Gsx1|14842|GS homeobox 1
mm9_v1_chr14_-_76956664_76956695	0.182659	GLI1..3.p2	BC100483|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115492|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115493|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr10_-_25798022_25798082	0.182317	GLI1..3.p2	AK165025|Tmem200a|77220|transmembrane protein 200A	BC141266|Tmem200a|77220|transmembrane protein 200A	BC141267|Tmem200a|77220|transmembrane protein 200A
mm9_v1_chr18_+_24867945_24868023	0.182065	GLI1..3.p2	AB078608|Fhod3|225288|formin homology 2 domain containing 3	AB078609|Fhod3|225288|formin homology 2 domain containing 3	AB100088|Fhod3|225288|formin homology 2 domain containing 3	NM_175276|Fhod3|225288|formin homology 2 domain containing 3	AK148245|Fhod3|225288|formin homology 2 domain containing 3	BC138046|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr1_+_43502836_43502855	0.181526	GLI1..3.p2	BC034255|Nck2|17974|non-catalytic region of tyrosine kinase adaptor protein 2
mm9_v1_chrM_+_15355_15407	0.181074	GLI1..3.p2	
mm9_v1_chr11_-_96680500_96680758	0.18102	GLI1..3.p2	AK201733|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	BC022152|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr7_+_138122822_138122930	0.180925	GLI1..3.p2	AK090321|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr1_+_65357830_65357830	0.180602	GLI1..3.p2	AK045576|Pth2r|213527|parathyroid hormone 2 receptor	NM_139270|Pth2r|213527|parathyroid hormone 2 receptor
mm9_v1_chr9_-_77956353_77956477	0.180539	GLI1..3.p2	AK018482|Fbxo9|71538|f-box protein 9	AB041585|Fbxo9|71538|f-box protein 9	BC020074|Fbxo9|71538|f-box protein 9	NM_023605|Fbxo9|71538|f-box protein 9
mm9_v1_chr9_+_3532302_3532353	0.180282	GLI1..3.p2	NM_001033322|Gucy1a2|234889|guanylate cyclase 1, soluble, alpha 2
mm9_v1_chr6_-_118429289_118429292	0.179577	GLI1..3.p2	NM_011763|Zfp9|22750|zinc finger protein 9
mm9_v1_chr11_+_68901989_68902022	0.179366	GLI1..3.p2	AK090178|Vamp2|22318|vesicle-associated membrane protein 2
mm9_v1_chr1_-_57029287_57029345	0.178967	GLI1..3.p2	AK129270|Satb2|212712|special AT-rich sequence binding protein 2
mm9_v1_chr4_-_140330097_140330124	0.178755	GLI1..3.p2	AB013850|Padi4|18602|peptidyl arginine deiminase, type IV	AK137625|Padi4|18602|peptidyl arginine deiminase, type IV	NM_011061|Padi4|18602|peptidyl arginine deiminase, type IV
mm9_v1_chr2_-_65962685_65962849	0.178456	GLI1..3.p2	U70538|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC043331|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	BC003765|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK007135|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK135489|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	AK019995|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	NM_015736|Galnt3|14425|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
mm9_v1_chr5_-_150438750_150438824	0.176755	GLI1..3.p2	BC018378|Hsph1|15505|heat shock 105kDa/110kDa protein 1	D67017|Hsph1|15505|heat shock 105kDa/110kDa protein 1	L40406|Hsph1|15505|heat shock 105kDa/110kDa protein 1	AK146697|Hsph1|15505|heat shock 105kDa/110kDa protein 1
mm9_v1_chr19_-_4615180_4615322	0.176404	GLI1..3.p2	BC023156|Lrfn4|225875|leucine rich repeat and fibronectin type III domain containing 4
mm9_v1_chr6_+_95067873_95067899	0.176247	GLI1..3.p2	AK142080|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001008785|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8	NM_001102670|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8
mm9_v1_chr11_+_29593131_29593178	0.1762	GLI1..3.p2	
mm9_v1_chr7_+_31844947_31844953	0.176147	GLI1..3.p2	AJ487521|Lgi4|243914|leucine-rich repeat LGI family, member 4	AJ487960|Lgi4|243914|leucine-rich repeat LGI family, member 4	NM_144556|Lgi4|243914|leucine-rich repeat LGI family, member 4
mm9_v1_chr10_+_89149113_89149139	0.175786	GLI1..3.p2	AK048993|1500026H17Rik|69002|RIKEN cDNA 1500026H17 gene	AK005299|1500026H17Rik|69002|RIKEN cDNA 1500026H17 gene	AK085365|1500026H17Rik|69002|RIKEN cDNA 1500026H17 gene
mm9_v1_chr6_-_143048295_143048370	0.175549	GLI1..3.p2	AK172966|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	BC053913|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK141590|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene
mm9_v1_chr18_-_38369326_38369415	0.175206	GLI1..3.p2	AY861431|Pcdh1|75599|protocadherin 1	BC040402|Pcdh1|75599|protocadherin 1	NM_029357|Pcdh1|75599|protocadherin 1
mm9_v1_chr18_+_61085283_61085301	0.174505	GLI1..3.p2	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr11_+_83116148_83116241	0.174199	GLI1..3.p2	AK138434|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_001035854|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	NM_027915|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK030505|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	BC046772|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit	AK032617|Ap2b1|71770|adaptor-related protein complex 2, beta 1 subunit
mm9_v1_chr19_-_6141100_6141219	0.174095	GLI1..3.p2	AF143680|Arl2|56327|ADP-ribosylation factor-like 2	BC052938|Arl2|56327|ADP-ribosylation factor-like 2	BC060259|Arl2|56327|ADP-ribosylation factor-like 2	AK011366|Arl2|56327|ADP-ribosylation factor-like 2	NM_019722|Arl2|56327|ADP-ribosylation factor-like 2	BC080803|Arl2|56327|ADP-ribosylation factor-like 2
mm9_v1_chr11_+_115243203_115243359	0.173885	GLI1..3.p2	NM_001080929|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC144823|Cdr2l|237988|cerebellar degeneration-related protein 2-like	BC150668|Cdr2l|237988|cerebellar degeneration-related protein 2-like
mm9_v1_chr2_+_143741050_143741074	0.173607	GLI1..3.p2	NM_019771|Dstn|56431|destrin
mm9_v1_chr8_+_73430048_73430142	0.173553	GLI1..3.p2	
mm9_v1_chr17_+_56465472_56465518	0.172539	GLI1..3.p2	NM_172132|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK078074|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK141879|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK129233|Kdm4b|193796|lysine (K)-specific demethylase 4B	BC007145|Kdm4b|193796|lysine (K)-specific demethylase 4B	AK145151|Kdm4b|193796|lysine (K)-specific demethylase 4B
mm9_v1_chr18_+_42671130_42671146	0.17208	GLI1..3.p2	NM_001039474|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr11_-_58615400_58615517	0.171985	GLI1..3.p2	FJ468008|Fam183b|75429|family with sequence similarity 183, member B	BC094630|Fam183b|75429|family with sequence similarity 183, member B	BC061254|Fam183b|75429|family with sequence similarity 183, member B	BC048748|Fam183b|75429|family with sequence similarity 183, member B	AK157972|Fam183b|75429|family with sequence similarity 183, member B	AK013920|Fam183b|75429|family with sequence similarity 183, member B	NM_001162878|Fam183b|75429|family with sequence similarity 183, member B	NM_029283|Fam183b|75429|family with sequence similarity 183, member B	BC126964|Fam183b|75429|family with sequence similarity 183, member B	BC117741|Fam183b|75429|family with sequence similarity 183, member B
mm9_v1_chr4_-_58924786_58924804	0.171806	GLI1..3.p2	AK038775|AI314180|230249|expressed sequence AI314180	AK043020|AI314180|230249|expressed sequence AI314180
mm9_v1_chr9_-_20447047_20447249	0.171391	GLI1..3.p2	AF176525|Fbxl12|30843|F-box and leucine-rich repeat protein 12	BC054471|Fbxl12|30843|F-box and leucine-rich repeat protein 12	NM_013911|Fbxl12|30843|F-box and leucine-rich repeat protein 12
mm9_v1_chr15_-_37721754_37721786	0.171019	GLI1..3.p2	NM_001170866|Ncald|52589|neurocalcin delta
mm9_v1_chr17_+_80689536_80689571	0.170713	GLI1..3.p2	AY367765|Morn2|378462|MORN repeat containing 2	NM_194269|Morn2|378462|MORN repeat containing 2	BC037365|Morn2|378462|MORN repeat containing 2
mm9_v1_chr19_-_4698231_4698314	0.170551	GLI1..3.p2	AK134945|Gm960|381196|predicted gene 960
mm9_v1_chr11_+_92959670_92959804	0.170027	GLI1..3.p2	AK012302|Car10|72605|carbonic anhydrase 10	AB080741|Car10|72605|carbonic anhydrase 10	BC066111|Car10|72605|carbonic anhydrase 10	AK038695|Car10|72605|carbonic anhydrase 10
mm9_v1_chr9_-_20757236_20757422	0.169828	GLI1..3.p2	AK013247|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	BC053047|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	BC048148|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	AK143578|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	X14805|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	AK147143|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	NM_010066|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	AF162282|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1	U70051|Dnmt1|13433|DNA methyltransferase (cytosine-5) 1
mm9_v1_chr11_+_78059210_78059318	0.1695	GLI1..3.p2	BC058798|Sdf2|20316|stromal cell derived factor 2	NM_009143|Sdf2|20316|stromal cell derived factor 2
mm9_v1_chr12_+_11272691_11272706	0.169398	GLI1..3.p2	BC090630|Smc6|67241|structural maintenance of chromosomes 6	NM_025695|Smc6|67241|structural maintenance of chromosomes 6
mm9_v1_chr7_+_17401610_17401709	0.169268	GLI1..3.p2	AK161673|Strn4|97387|striatin, calmodulin binding protein 4	BC080283|Strn4|97387|striatin, calmodulin binding protein 4	AK154615|Strn4|97387|striatin, calmodulin binding protein 4
mm9_v1_chr9_+_22215956_22216031	0.167924	GLI1..3.p2	AK220359|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	AK021129|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	AK170604|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	BC054761|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene	NM_026739|9530077C05Rik|68283|RIKEN cDNA 9530077C05 gene
mm9_v1_chr9_+_43875103_43875168	0.167571	GLI1..3.p2	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr7_-_86293852_86293959	0.167528	GLI1..3.p2	AB021130|Mfge8|17304|milk fat globule-EGF factor 8 protein	AB025280|Mfge8|17304|milk fat globule-EGF factor 8 protein	Y11684|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK209209|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC018577|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003904|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003892|Mfge8|17304|milk fat globule-EGF factor 8 protein	M38337|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK089211|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK145183|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK169997|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK170935|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK171143|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK148371|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK087555|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK152088|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK155047|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_001045489|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_008594|Mfge8|17304|milk fat globule-EGF factor 8 protein
mm9_v1_chr2_+_30247921_30247956	0.167355	GLI1..3.p2	AB030189|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK002544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK044141|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK088065|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	NM_020329|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK053923|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	BC026544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1
mm9_v1_chrX_+_7215705_7215836	0.167264	GLI1..3.p2	NM_009305|Syp|20977|synaptophysin	AK034291|Syp|20977|synaptophysin	AK043756|Syp|20977|synaptophysin	AK090259|Syp|20977|synaptophysin	BC052354|Syp|20977|synaptophysin	BC014823|Syp|20977|synaptophysin	X95818|Syp|20977|synaptophysin
mm9_v1_chr10_-_60846055_60846288	0.167104	GLI1..3.p2	X99384|X99384|27355|cDNA sequence X99384	BC099531|X99384|27355|cDNA sequence X99384	BC052850|X99384|27355|cDNA sequence X99384	AK088577|X99384|27355|cDNA sequence X99384	AK146489|X99384|27355|cDNA sequence X99384	NM_013753|X99384|27355|cDNA sequence X99384
mm9_v1_chr9_-_108208272_108208302	0.166706	GLI1..3.p2	BC019397|Tcta|102791|T-cell leukemia translocation altered gene	NM_133986|Tcta|102791|T-cell leukemia translocation altered gene
mm9_v1_chrX_+_53599573_53599586	0.166131	GLI1..3.p2	AK142888|Zfp449|78619|zinc finger protein 449	AK036596|Zfp449|78619|zinc finger protein 449	NM_030139|Zfp449|78619|zinc finger protein 449	AK020600|Zfp449|78619|zinc finger protein 449
mm9_v1_chr4_+_147315190_147315222	0.166051	GLI1..3.p2	AK194052|2510039O18Rik|77034|RIKEN cDNA 2510039O18 gene
mm9_v1_chr10_+_62706550_62706579	0.165954	GLI1..3.p2	AK019546|Herc4|67345|hect domain and RLD 4
mm9_v1_chr6_-_86798929_86799146	0.165143	GLI1..3.p2	BC096561|2610306M01Rik|67170|RIKEN cDNA 2610306M01 gene	BC058130|2610306M01Rik|67170|RIKEN cDNA 2610306M01 gene
mm9_v1_chr17_+_21082425_21082439	0.165049	GLI1..3.p2	BC052678|Ppp2r1a|51792|protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform
mm9_v1_chr14_-_21299301_21299354	0.165038	GLI1..3.p2	NM_001110794|Anxa7|11750|annexin A7	NM_009674|Anxa7|11750|annexin A7
mm9_v1_chr12_+_22990655_22990730	0.164808	GLI1..3.p2	BC063063|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK134640|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK013418|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene	AK010549|2410018L13Rik|69732|RIKEN cDNA 2410018L13 gene
mm9_v1_chr6_-_120772683_120772817	0.164533	GLI1..3.p2	BC003421|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	NM_007510|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AB074758|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK146162|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK169854|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK010603|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK139791|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1	AK149356|Atp6v1e1|11973|ATPase, H+ transporting, lysosomal V1 subunit E1
mm9_v1_chr1_-_36864987_36865029	0.163926	GLI1..3.p2	BC120906|Tmem131|56030|transmembrane protein 131	BC139734|Tmem131|56030|transmembrane protein 131
mm9_v1_chr9_-_22064292_22064338	0.1627	GLI1..3.p2	AK032725|Zfp599|235048|zinc finger protein 599	BC050092|Zfp599|235048|zinc finger protein 599	NM_181419|Zfp599|235048|zinc finger protein 599
mm9_v1_chr14_+_13116681_13116761	0.162615	GLI1..3.p2	NM_146051|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene	NM_178141|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene	AK076182|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene	BC094456|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene	AK089971|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene	BC027421|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene
mm9_v1_chr19_-_7457485_7457515	0.162243	GLI1..3.p2	NM_001033139|AI846148|68229|expressed sequence AI846148	NM_001167831|AI846148|68229|expressed sequence AI846148
mm9_v1_chr3_+_37247574_37247574	0.16189	GLI1..3.p2	NM_008006|Fgf2|14173|fibroblast growth factor 2
mm9_v1_chr6_-_93863547_93863683	0.161738	GLI1..3.p2	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr11_-_70053281_70053355	0.161396	GLI1..3.p2	BC021602|Rnasek|52898|ribonuclease, RNase K	BC021603|Rnasek|52898|ribonuclease, RNase K	AK018709|Rnasek|52898|ribonuclease, RNase K	AK171975|Rnasek|52898|ribonuclease, RNase K	BC024417|Rnasek|52898|ribonuclease, RNase K	AK003548|Rnasek|52898|ribonuclease, RNase K	AK009592|Rnasek|52898|ribonuclease, RNase K	NM_173742|Rnasek|52898|ribonuclease, RNase K
mm9_v1_chr2_+_157854427_157854433	0.161379	GLI1..3.p2	AK045404|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr6_-_8728481_8728486	0.161056	GLI1..3.p2	AK005965|Ica1|15893|islet cell autoantigen 1	NM_010492|Ica1|15893|islet cell autoantigen 1	AK016989|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr8_+_96335202_96335227	0.16085	GLI1..3.p2	M36778|Gnao1|14681|guanine nucleotide binding protein, alpha O	M36777|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr8_-_127245800_127245897	0.16078	GLI1..3.p2	AK212172|Ttc13|234875|tetratricopeptide repeat domain 13	BC079851|Ttc13|234875|tetratricopeptide repeat domain 13	BC072577|Ttc13|234875|tetratricopeptide repeat domain 13	AK148102|Ttc13|234875|tetratricopeptide repeat domain 13	AK144842|Ttc13|234875|tetratricopeptide repeat domain 13	NM_145607|Ttc13|234875|tetratricopeptide repeat domain 13	AK051200|Ttc13|234875|tetratricopeptide repeat domain 13	AK160894|Ttc13|234875|tetratricopeptide repeat domain 13
mm9_v1_chr10_+_74523775_74523878	0.160773	GLI1..3.p2	BC131682|Bcr|110279|breakpoint cluster region
mm9_v1_chr8_+_107788547_107788600	0.160552	GLI1..3.p2	NM_015821|Fbxl8|50788|F-box and leucine-rich repeat protein 8	AK053206|Fbxl8|50788|F-box and leucine-rich repeat protein 8	AK155194|Fbxl8|50788|F-box and leucine-rich repeat protein 8	AK170367|Fbxl8|50788|F-box and leucine-rich repeat protein 8
mm9_v1_chr9_+_40494076_40494232	0.159276	GLI1..3.p2	AK028983|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene	AK080481|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene	AB040490|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene	BC026447|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene
mm9_v1_chr2_+_162769136_162769210	0.158867	GLI1..3.p2	BC116639|L3mbtl|241764|l(3)mbt-like (Drosophila)	NM_001081338|L3mbtl|241764|l(3)mbt-like (Drosophila)	AK049859|L3mbtl|241764|l(3)mbt-like (Drosophila)	AJ875399|L3mbtl|241764|l(3)mbt-like (Drosophila)	AJ875400|L3mbtl|241764|l(3)mbt-like (Drosophila)	AJ875401|L3mbtl|241764|l(3)mbt-like (Drosophila)
mm9_v1_chr7_-_20506379_20506493	0.158157	GLI1..3.p2	AJ563420|Pvr|52118|poliovirus receptor	BC138219|Pvr|52118|poliovirus receptor	BC138220|Pvr|52118|poliovirus receptor	BC032283|Pvr|52118|poliovirus receptor	AB195430|Pvr|52118|poliovirus receptor	BC013673|Pvr|52118|poliovirus receptor	AK078344|Pvr|52118|poliovirus receptor	AK014446|Pvr|52118|poliovirus receptor	AK038747|Pvr|52118|poliovirus receptor	AK080753|Pvr|52118|poliovirus receptor	AK165873|Pvr|52118|poliovirus receptor	NM_027514|Pvr|52118|poliovirus receptor
mm9_v1_chr11_-_120012603_120012679	0.1577	GLI1..3.p2	AK159948|Slc38a10|72055|solute carrier family 38, member 10	AK165672|Slc38a10|72055|solute carrier family 38, member 10	BC082300|Slc38a10|72055|solute carrier family 38, member 10	AK090050|Slc38a10|72055|solute carrier family 38, member 10	NM_001164798|Slc38a10|72055|solute carrier family 38, member 10	NM_001164799|Slc38a10|72055|solute carrier family 38, member 10	NM_001164800|Slc38a10|72055|solute carrier family 38, member 10	NM_001164801|Slc38a10|72055|solute carrier family 38, member 10	NM_001164802|Slc38a10|72055|solute carrier family 38, member 10	NM_024249|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr5_+_3803180_3803451	0.157406	GLI1..3.p2	AK088956|Krit1|79264|KRIT1, ankyrin repeat containing	AK008150|Krit1|79264|KRIT1, ankyrin repeat containing	AK082175|Krit1|79264|KRIT1, ankyrin repeat containing	AK085107|Krit1|79264|KRIT1, ankyrin repeat containing	AK144667|Krit1|79264|KRIT1, ankyrin repeat containing	AK172215|Krit1|79264|KRIT1, ankyrin repeat containing	AF310134|Krit1|79264|KRIT1, ankyrin repeat containing	BC054819|Krit1|79264|KRIT1, ankyrin repeat containing	AK039264|Krit1|79264|KRIT1, ankyrin repeat containing	BC016087|Krit1|79264|KRIT1, ankyrin repeat containing	BC141042|Krit1|79264|KRIT1, ankyrin repeat containing	BC085252|Krit1|79264|KRIT1, ankyrin repeat containing	AF306509|Krit1|79264|KRIT1, ankyrin repeat containing
mm9_v1_chr7_-_137663020_137663074	0.157104	GLI1..3.p2	BC050948|Ate1|11907|arginyltransferase 1	NM_001136054|Ate1|11907|arginyltransferase 1	AK167591|Ate1|11907|arginyltransferase 1	BC042601|Ate1|11907|arginyltransferase 1	NM_013799|Ate1|11907|arginyltransferase 1	AK148442|Ate1|11907|arginyltransferase 1
mm9_v1_chr2_-_154395076_154395154	0.156731	GLI1..3.p2	AK017841|E2f1|13555|E2F transcription factor 1
mm9_v1_chr10_+_96079634_96079769	0.15673	GLI1..3.p2	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr6_-_82889660_82889681	0.156616	GLI1..3.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr12_-_76278318_76278318	0.156485	GLI1..3.p2	AK032438|Kcnh5|238271|potassium voltage-gated channel, subfamily H (eag-related), member 5	NM_172805|Kcnh5|238271|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm9_v1_chr6_+_90319485_90319663	0.156451	GLI1..3.p2	AK081005|Zxdc|80292|ZXD family zinc finger C	NM_030260|Zxdc|80292|ZXD family zinc finger C	NM_173002|Zxdc|80292|ZXD family zinc finger C	BC003332|Zxdc|80292|ZXD family zinc finger C	AK042190|Zxdc|80292|ZXD family zinc finger C	AK044529|Zxdc|80292|ZXD family zinc finger C	AK030287|Zxdc|80292|ZXD family zinc finger C	AK047538|Zxdc|80292|ZXD family zinc finger C	AK042392|Zxdc|80292|ZXD family zinc finger C	AK080307|Zxdc|80292|ZXD family zinc finger C	AK044429|Zxdc|80292|ZXD family zinc finger C	AK044948|Zxdc|80292|ZXD family zinc finger C	AK169517|Zxdc|80292|ZXD family zinc finger C	AK047079|Zxdc|80292|ZXD family zinc finger C	AK137347|Zxdc|80292|ZXD family zinc finger C	AK141613|Zxdc|80292|ZXD family zinc finger C
mm9_v1_chr11_+_121563691_121563785	0.156301	GLI1..3.p2	BC024445|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK034855|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK053718|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK085880|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK170549|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK170800|Metrnl|210029|meteorin, glial cell differentiation regulator-like	NM_144797|Metrnl|210029|meteorin, glial cell differentiation regulator-like	BC026646|Metrnl|210029|meteorin, glial cell differentiation regulator-like	BC019776|Metrnl|210029|meteorin, glial cell differentiation regulator-like
mm9_v1_chr16_-_21947543_21947585	0.156214	GLI1..3.p2	AK160292|Tmem41a|66664|transmembrane protein 41a	BC019770|Tmem41a|66664|transmembrane protein 41a
mm9_v1_chr6_-_72389553_72389557	0.156029	GLI1..3.p2	AK079420|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr9_-_66881744_66881755	0.155844	GLI1..3.p2	AK210663|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr5_+_118619772_118619918	0.155505	GLI1..3.p2	BC128022|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	D83698|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)	NM_007545|Hrk|12123|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm9_v1_chr7_+_57230683_57230719	0.154954	GLI1..3.p2	AY622226|Nell1|338352|NEL-like 1 (chicken)	NM_001037906|Nell1|338352|NEL-like 1 (chicken)
mm9_v1_chr10_+_84565370_84565389	0.154777	GLI1..3.p2	NM_001013028|AI597468|103266|expressed sequence AI597468
mm9_v1_chr11_+_94871620_94871635	0.154631	GLI1..3.p2	BC049954|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr12_-_112910475_112910550	0.154608	GLI1..3.p2	BC106109|Ckb|12709|creatine kinase, brain	BC015271|Ckb|12709|creatine kinase, brain	AK014299|Ckb|12709|creatine kinase, brain	BC058257|Ckb|12709|creatine kinase, brain	AK148885|Ckb|12709|creatine kinase, brain	AK152388|Ckb|12709|creatine kinase, brain	AK153484|Ckb|12709|creatine kinase, brain	AK161990|Ckb|12709|creatine kinase, brain	AK002467|Ckb|12709|creatine kinase, brain	AK165779|Ckb|12709|creatine kinase, brain	AK166980|Ckb|12709|creatine kinase, brain	AK167034|Ckb|12709|creatine kinase, brain	NM_021273|Ckb|12709|creatine kinase, brain
mm9_v1_chr12_-_85534964_85534979	0.153934	GLI1..3.p2	AK155547|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK171272|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	NM_001163502|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene	AK081554|C130039O16Rik|238317|RIKEN cDNA C130039O16 gene
mm9_v1_chr9_-_44688946_44689136	0.153928	GLI1..3.p2	AK145484|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1	L17069|Mll1|214162|myeloid/lymphoid or mixed-lineage leukemia 1
mm9_v1_chr19_+_6241665_6241742	0.153476	GLI1..3.p2	NM_194348|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)	BC063264|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)	AK129132|Atg2a|329015|ATG2 autophagy related 2 homolog A (S. cerevisiae)
mm9_v1_chr12_+_21117670_21117690	0.15339	GLI1..3.p2	AK147656|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr16_-_31429861_31429871	0.153359	GLI1..3.p2	AK036265|LOC100047123|100047123|hypothetical protein LOC100047123
mm9_v1_chr10_+_79256298_79256486	0.153027	GLI1..3.p2	AK082163|Palm|18483|paralemmin	NM_001161747|Palm|18483|paralemmin	NM_023128|Palm|18483|paralemmin	AK162411|Palm|18483|paralemmin	BC015297|Palm|18483|paralemmin	Y14771|Palm|18483|paralemmin	AK133733|Palm|18483|paralemmin	AK037044|Palm|18483|paralemmin
mm9_v1_chr4_-_115690263_115690388	0.153017	GLI1..3.p2	U82536|Faah|14073|fatty acid amide hydrolase	AK032079|Faah|14073|fatty acid amide hydrolase	BC006863|Faah|14073|fatty acid amide hydrolase	AK004985|Faah|14073|fatty acid amide hydrolase	AK080603|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr19_+_42245078_42245100	0.152599	GLI1..3.p2	BC024801|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK159065|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK170237|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chrX_+_117040804_117040804	0.151872	GLI1..3.p2	AK050551|Pabpc5|93728|poly(A) binding protein, cytoplasmic 5	NM_053114|Pabpc5|93728|poly(A) binding protein, cytoplasmic 5
mm9_v1_chr5_+_37259780_37259853	0.151433	GLI1..3.p2	AY348866|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	BC059811|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	NM_172994|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm9_v1_chrX_+_97170927_97171053	0.151282	GLI1..3.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr4_+_106233807_106233880	0.150911	GLI1..3.p2	AK017937|Dhcr24|74754|24-dehydrocholesterol reductase
mm9_v1_chr15_-_81560257_81560281	0.149903	GLI1..3.p2	BC052862|Rangap1|19387|RAN GTPase activating protein 1	AK088768|Rangap1|19387|RAN GTPase activating protein 1	AK145459|Rangap1|19387|RAN GTPase activating protein 1	AK129452|Rangap1|19387|RAN GTPase activating protein 1
mm9_v1_chr16_+_10545479_10545491	0.149708	GLI1..3.p2	AK122255|Clec16a|74374|C-type lectin domain family 16, member A	NM_177562|Clec16a|74374|C-type lectin domain family 16, member A	AK155314|Clec16a|74374|C-type lectin domain family 16, member A
mm9_v1_chr3_+_141128527_141128634	0.149456	GLI1..3.p2	NM_009472|Unc5c|22253|unc-5 homolog C (C. elegans)	U72634|Unc5c|22253|unc-5 homolog C (C. elegans)	BC115772|Unc5c|22253|unc-5 homolog C (C. elegans)	AK031655|Unc5c|22253|unc-5 homolog C (C. elegans)	AK034558|Unc5c|22253|unc-5 homolog C (C. elegans)	AK035038|Unc5c|22253|unc-5 homolog C (C. elegans)	AK045251|Unc5c|22253|unc-5 homolog C (C. elegans)	AK141181|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142411|Unc5c|22253|unc-5 homolog C (C. elegans)	AK164239|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142974|Unc5c|22253|unc-5 homolog C (C. elegans)
mm9_v1_chr3_-_79371600_79371778	0.149141	GLI1..3.p2	NM_001162999|Fnip2|329679|folliculin interacting protein 2
mm9_v1_chr9_+_106091656_106091698	0.148819	GLI1..3.p2	BC054453|Wdr82|77305|WD repeat domain containing 82	BC112907|Wdr82|77305|WD repeat domain containing 82	BC044669|Wdr82|77305|WD repeat domain containing 82
mm9_v1_chr1_+_72871060_72871146	0.148665	GLI1..3.p2	AK012703|Igfbp2|16008|insulin-like growth factor binding protein 2	BC012724|Igfbp2|16008|insulin-like growth factor binding protein 2	NM_008342|Igfbp2|16008|insulin-like growth factor binding protein 2	BC054473|Igfbp2|16008|insulin-like growth factor binding protein 2	X81580|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011784|Igfbp2|16008|insulin-like growth factor binding protein 2	AK011790|Igfbp2|16008|insulin-like growth factor binding protein 2
mm9_v1_chr3_+_28162135_28162218	0.148518	GLI1..3.p2	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr14_+_120705667_120705677	0.147696	GLI1..3.p2	AK153261|Mbnl2|105559|muscleblind-like 2	AK167694|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr2_+_153117135_153117203	0.147125	GLI1..3.p2	NM_008444|Kif3b|16569|kinesin family member 3B	AK147467|Kif3b|16569|kinesin family member 3B	AK083700|Kif3b|16569|kinesin family member 3B	AK148200|Kif3b|16569|kinesin family member 3B	BC065132|Kif3b|16569|kinesin family member 3B	AK122258|Kif3b|16569|kinesin family member 3B	AK081541|Kif3b|16569|kinesin family member 3B
mm9_v1_chr12_-_35591643_35591657	0.146755	GLI1..3.p2	AK087563|Hdac9|79221|histone deacetylase 9
mm9_v1_chr1_+_173341811_173341858	0.146467	GLI1..3.p2	NM_009480|Usf1|22278|upstream transcription factor 1
mm9_v1_chr16_+_3744037_3744202	0.146428	GLI1..3.p2	NM_148924|Zfp263|74120|zinc finger protein 263	AK004765|Zfp263|74120|zinc finger protein 263	AK159455|Zfp263|74120|zinc finger protein 263	AF499776|Zfp263|74120|zinc finger protein 263	BC060162|Zfp263|74120|zinc finger protein 263
mm9_v1_chr2_-_168567422_168567434	0.146198	GLI1..3.p2	BC075718|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr18_+_37105758_37105860	0.145721	GLI1..3.p2	AK129120|Pcdha3|192163|protocadherin alpha 3	BC141348|Pcdha3|192163|protocadherin alpha 3	AY013761|Pcdha3|192163|protocadherin alpha 3	NM_138662|Pcdha3|192163|protocadherin alpha 3
mm9_v1_chr5_-_36071698_36071756	0.145385	GLI1..3.p2	AK150064|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK159089|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK170396|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1	AK170383|Sh3tc1|231147|SH3 domain and tetratricopeptide repeats 1
mm9_v1_chr2_+_25258568_25258631	0.145147	GLI1..3.p2	BC003320|Npdc1|18146|neural proliferation, differentiation and control gene 1	NM_008721|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr3_+_153636391_153636423	0.145127	GLI1..3.p2	BC086641|Slc44a5|242259|solute carrier family 44, member 5	NM_001081263|Slc44a5|242259|solute carrier family 44, member 5
mm9_v1_chr17_+_24551509_24551671	0.145117	GLI1..3.p2	AK143213|Rnps1|19826|ribonucleic acid binding protein S1	AK011475|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080127|Rnps1|19826|ribonucleic acid binding protein S1	NM_001080128|Rnps1|19826|ribonucleic acid binding protein S1	NM_009070|Rnps1|19826|ribonucleic acid binding protein S1	AK146443|Rnps1|19826|ribonucleic acid binding protein S1	AK151150|Rnps1|19826|ribonucleic acid binding protein S1	BC002061|Rnps1|19826|ribonucleic acid binding protein S1	AK165905|Rnps1|19826|ribonucleic acid binding protein S1	AK164151|Rnps1|19826|ribonucleic acid binding protein S1
mm9_v1_chr7_+_53040723_53040749	0.144516	GLI1..3.p2	BC083185|Lmtk3|381983|lemur tyrosine kinase 3
mm9_v1_chr17_-_26381017_26381195	0.143305	GLI1..3.p2	BC046457|Itfg3|106581|integrin alpha FG-GAP repeat containing 3	AK029427|Itfg3|106581|integrin alpha FG-GAP repeat containing 3	NM_207217|Itfg3|106581|integrin alpha FG-GAP repeat containing 3	AK170646|Itfg3|106581|integrin alpha FG-GAP repeat containing 3	AK158049|Itfg3|106581|integrin alpha FG-GAP repeat containing 3
mm9_v1_chr11_+_29426408_29426413	0.143254	GLI1..3.p2	
mm9_v1_chr7_+_4610254_4610262	0.143133	GLI1..3.p2	
mm9_v1_chr9_-_107775011_107775029	0.142387	GLI1..3.p2	AK220446|Rbm6|19654|RNA binding motif protein 6	AJ006486|Rbm6|19654|RNA binding motif protein 6	BC026130|Rbm6|19654|RNA binding motif protein 6
mm9_v1_chr13_+_33119282_33119422	0.142166	GLI1..3.p2	AK005491|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	NM_011452|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	U96705|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	AK167563|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	AK171850|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b	BC064768|Serpinb9b|20706|serine (or cysteine) peptidase inhibitor, clade B, member 9b
mm9_v1_chr10_+_57514349_57514589	0.141879	GLI1..3.p2	NM_020561|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	Y08135|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK002455|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK152282|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139288|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139289|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK151683|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A
mm9_v1_chr2_-_26766145_26766181	0.141749	GLI1..3.p2	BC018225|Med22|20933|mediator complex subunit 22	NM_001033908|Med22|20933|mediator complex subunit 22	NM_011513|Med22|20933|mediator complex subunit 22
mm9_v1_chr6_+_110595586_110595619	0.141747	GLI1..3.p2	BC080315|Grm7|108073|glutamate receptor, metabotropic 7	NM_177328|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr5_-_121062483_121062618	0.141718	GLI1..3.p2	BC021365|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	AK003581|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_029096|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene	NM_133908|1110008J03Rik|100764|RIKEN cDNA 1110008J03 gene
mm9_v1_chr2_-_84518208_84518278	0.141414	GLI1..3.p2	AK170587|Tmx2|66958|thioredoxin-related transmembrane protein 2	AK145245|Tmx2|66958|thioredoxin-related transmembrane protein 2
mm9_v1_chr3_+_88987108_88987146	0.140589	GLI1..3.p2	BC068123|Fam189b|68521|family with sequence similarity 189, member B	BC088990|Fam189b|68521|family with sequence similarity 189, member B	NM_001014995|Fam189b|68521|family with sequence similarity 189, member B
mm9_v1_chr8_+_72346327_72346515	0.140253	GLI1..3.p2	BC060131|Lpar2|53978|lysophosphatidic acid receptor 2	BC064676|Lpar2|53978|lysophosphatidic acid receptor 2	AK144861|Lpar2|53978|lysophosphatidic acid receptor 2	NM_020028|Lpar2|53978|lysophosphatidic acid receptor 2	AK143792|Lpar2|53978|lysophosphatidic acid receptor 2	AK051092|Lpar2|53978|lysophosphatidic acid receptor 2
mm9_v1_chr11_-_95926589_95926740	0.139432	GLI1..3.p2	AK077793|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK149770|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	NM_172300|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr4_-_136512727_136512761	0.139223	GLI1..3.p2	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr9_-_119734573_119734593	0.139072	GLI1..3.p2	AF118044|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha	NM_011887|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha
mm9_v1_chr7_+_19791687_19791691	0.138936	GLI1..3.p2	AK215580|Eml2|72205|echinoderm microtubule associated protein like 2
mm9_v1_chr1_+_129765349_129765386	0.138858	GLI1..3.p2	NM_178690|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK172881|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK035603|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076399|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK080432|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK134604|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK164523|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK170768|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	BC046297|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1	AK076244|Rab3gap1|226407|RAB3 GTPase activating protein subunit 1
mm9_v1_chr4_+_129013245_129013310	0.138428	GLI1..3.p2	BC094629|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK132279|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC046825|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK008007|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC125606|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC125608|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	NM_025970|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AK007377|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	AY071852|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC026442|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand	BC037657|Zbtb8os|67106|zinc finger and BTB domain containing 8 opposite strand
mm9_v1_chr16_+_17276384_17276419	0.138323	GLI1..3.p2	NM_177473|Tmem191c|224019|transmembrane protein 191C	AK016675|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr3_+_36050001_36050053	0.138297	GLI1..3.p2	NM_001101478|D3Ertd254e|241944|DNA segment, Chr 3, ERATO Doi 254, expressed	AK153849|D3Ertd254e|241944|DNA segment, Chr 3, ERATO Doi 254, expressed
mm9_v1_chrX_-_91787372_91787452	0.138201	GLI1..3.p2	AB029448|Maged1|94275|melanoma antigen, family D, 1	NM_019791|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr2_+_165818203_165818241	0.137706	GLI1..3.p2	AK142306|Ncoa3|17979|nuclear receptor coactivator 3
mm9_v1_chr11_+_68829412_68829631	0.137705	GLI1..3.p2	NM_001013256|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	NM_001143790|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC072625|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC066078|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK145919|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK165906|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147495|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147497|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK044055|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK030876|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK038651|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene
mm9_v1_chr3_-_62310885_62310902	0.137695	GLI1..3.p2	BC064890|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	BC138061|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	AK129373|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm9_v1_chr12_+_103521251_103521297	0.137453	GLI1..3.p2	AK154506|Rin3|217835|Ras and Rab interactor 3	AK032205|Rin3|217835|Ras and Rab interactor 3	NM_177620|Rin3|217835|Ras and Rab interactor 3	AY265356|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr8_+_86423968_86424035	0.137232	GLI1..3.p2	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr17_+_35035898_35035925	0.1372	GLI1..3.p2	AK154246|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2	AB077210|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2	NM_145830|Ehmt2|110147|euchromatic histone lysine N-methyltransferase 2
mm9_v1_chr2_-_164571430_164571435	0.1372	GLI1..3.p2	AK006001|Wfdc3|71856|WAP four-disulfide core domain 3	AK007299|Wfdc3|71856|WAP four-disulfide core domain 3
mm9_v1_chr14_+_22319075_22319102	0.137049	GLI1..3.p2	AK052307|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	NM_017479|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4	AF222800|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4
mm9_v1_chr7_-_148620437_148620500	0.136816	GLI1..3.p2	AK162400|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	BC037949|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	AK155276|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	NM_001177576|Slc25a22|68267|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm9_v1_chr17_+_24625709_24625729	0.136393	GLI1..3.p2	NM_027937|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr11_-_6100014_6100127	0.136211	GLI1..3.p2	BC052089|Nudcd3|209586|NudC domain containing 3	AK215033|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr2_-_5816381_5816442	0.135544	GLI1..3.p2	AK160602|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK077701|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	NM_021305|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)
mm9_v1_chr19_-_38199737_38199810	0.135421	GLI1..3.p2	BC093529|Rbp4|19662|retinol binding protein 4, plasma	NM_001159487|Rbp4|19662|retinol binding protein 4, plasma
mm9_v1_chr3_+_95428870_95428903	0.13542	GLI1..3.p2	AK011334|Ensa|56205|endosulfine alpha	AK019170|Ensa|56205|endosulfine alpha	NM_001026212|Ensa|56205|endosulfine alpha	NM_019561|Ensa|56205|endosulfine alpha
mm9_v1_chr2_-_90420626_90420803	0.134969	GLI1..3.p2	AY038891|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AY039232|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147318|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147556|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	D45212|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	NM_008982|Ptprj|19271|protein tyrosine phosphatase, receptor type, J
mm9_v1_chr7_+_135754831_135754990	0.134689	GLI1..3.p2	AK150418|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	AK154996|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	AK030870|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	NM_178641|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	AK129249|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	BC125437|Inpp5f|101490|inositol polyphosphate-5-phosphatase F	BC137700|Inpp5f|101490|inositol polyphosphate-5-phosphatase F
mm9_v1_chr5_-_142985612_142985614	0.134614	GLI1..3.p2	AK079539|Radil|231858|Ras association and DIL domains
mm9_v1_chr14_-_62911797_62911815	0.134103	GLI1..3.p2	BC038059|Dleu7|239133|deleted in lymphocytic leukemia, 7	NM_173419|Dleu7|239133|deleted in lymphocytic leukemia, 7
mm9_v1_chr11_-_69373707_69373738	0.134073	GLI1..3.p2	NM_007911|Efnb3|13643|ephrin B3
mm9_v1_chr3_-_104024291_104024328	0.134049	GLI1..3.p2	AK018328|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_001159354|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3	NM_133853|Magi3|99470|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm9_v1_chr11_-_70482778_70482812	0.133911	GLI1..3.p2	BC046751|Spag7|216873|sperm associated antigen 7	BC055821|Spag7|216873|sperm associated antigen 7	AK077543|Spag7|216873|sperm associated antigen 7	AK042294|Spag7|216873|sperm associated antigen 7	AK166184|Spag7|216873|sperm associated antigen 7
mm9_v1_chr7_+_4971977_4971977	0.133589	GLI1..3.p2	AK154737|Zfp865|319748|zinc finger protein 865	NM_001033383|Zfp865|319748|zinc finger protein 865
mm9_v1_chr4_+_62141084_62141100	0.133423	GLI1..3.p2	BC139079|Bspry|192120|B-box and SPRY domain containing	BC139080|Bspry|192120|B-box and SPRY domain containing	BC145535|Bspry|192120|B-box and SPRY domain containing	AK035588|Bspry|192120|B-box and SPRY domain containing	AK160930|Bspry|192120|B-box and SPRY domain containing	AJ276690|Bspry|192120|B-box and SPRY domain containing	NM_138653|Bspry|192120|B-box and SPRY domain containing
mm9_v1_chr9_-_21875719_21875761	0.132668	GLI1..3.p2	AK046492|Zfp653|319601|zinc finger protein 653	AK157635|Zfp653|319601|zinc finger protein 653
mm9_v1_chr10_-_79538107_79538150	0.132402	GLI1..3.p2	AK156157|Sbno2|216161|strawberry notch homolog 2 (Drosophila)
mm9_v1_chr4_+_155246871_155246997	0.132147	GLI1..3.p2	AK180161|Cpsf3l|71957|cleavage and polyadenylation specific factor 3-like
mm9_v1_chr3_+_52072302_52072340	0.131969	GLI1..3.p2	AK137629|Foxo1|56458|forkhead box O1	AF114258|Foxo1|56458|forkhead box O1
mm9_v1_chr13_+_77274778_77274859	0.131646	GLI1..3.p2	NM_001081353|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	NM_001145676|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK165312|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK050886|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK008859|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC089469|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC151066|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	BC157949|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene	AK143619|2210408I21Rik|72371|RIKEN cDNA 2210408I21 gene
mm9_v1_chr3_-_92289795_92289819	0.131168	GLI1..3.p2	X91824|Sprr1a|20753|small proline-rich protein 1A	BC027534|Sprr1a|20753|small proline-rich protein 1A	NM_009264|Sprr1a|20753|small proline-rich protein 1A	AK144782|Sprr1a|20753|small proline-rich protein 1A
mm9_v1_chr1_+_75378688_75378710	0.131019	GLI1..3.p2	NM_001085371|Speg|11790|SPEG complex locus	AK164360|Speg|11790|SPEG complex locus
mm9_v1_chr15_+_101042440_101042460	0.130363	GLI1..3.p2	AK078525|Acvr1b|11479|activin A receptor, type 1B
mm9_v1_chr10_-_31165691_31165726	0.130318	GLI1..3.p2	AF004428|Tpd52l1|21987|tumor protein D52-like 1	NM_009413|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr1_+_155587480_155587527	0.129634	GLI1..3.p2	AK079543|Rgs16|19734|regulator of G-protein signaling 16	NM_011267|Rgs16|19734|regulator of G-protein signaling 16	AK154324|Rgs16|19734|regulator of G-protein signaling 16	U94828|Rgs16|19734|regulator of G-protein signaling 16	U67189|Rgs16|19734|regulator of G-protein signaling 16	BC049968|Rgs16|19734|regulator of G-protein signaling 16	BC010980|Rgs16|19734|regulator of G-protein signaling 16	BC055459|Rgs16|19734|regulator of G-protein signaling 16	U72881|Rgs16|19734|regulator of G-protein signaling 16
mm9_v1_chr16_-_84835213_84835265	0.129589	GLI1..3.p2	AK078484|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr6_+_113433507_113433615	0.128961	GLI1..3.p2	BC029065|Creld1|171508|cysteine-rich with EGF-like domains 1	AK155777|Creld1|171508|cysteine-rich with EGF-like domains 1	AB009020|Creld1|171508|cysteine-rich with EGF-like domains 1	BC010804|Creld1|171508|cysteine-rich with EGF-like domains 1	BC023893|Creld1|171508|cysteine-rich with EGF-like domains 1	NM_133930|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr11_+_104189978_104190032	0.128923	GLI1..3.p2	AK135147|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr7_-_145589409_145589421	0.128851	GLI1..3.p2	AK017700|Tcerg1l|70571|transcription elongation regulator 1-like	NM_183289|Tcerg1l|70571|transcription elongation regulator 1-like
mm9_v1_chr11_-_116196604_116196673	0.128631	GLI1..3.p2	AK140847|Foxj1|15223|forkhead box J1	BC082543|Foxj1|15223|forkhead box J1	NM_008240|Foxj1|15223|forkhead box J1
mm9_v1_chr8_-_48618741_48618847	0.128511	GLI1..3.p2	BC147504|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	BC151159|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK083445|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK085769|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	AK160812|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene	NM_177240|D030016E14Rik|320714|RIKEN cDNA D030016E14 gene
mm9_v1_chr15_-_27955602_27955621	0.127929	GLI1..3.p2	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr6_-_90378423_90378473	0.127503	GLI1..3.p2	BC047211|Ccdc37|243538|coiled-coil domain containing 37	AK021139|Ccdc37|243538|coiled-coil domain containing 37	NM_173775|Ccdc37|243538|coiled-coil domain containing 37
mm9_v1_chr4_-_43022972_43023183	0.127082	GLI1..3.p2	AY049715|Fancg|60534|Fanconi anemia, complementation group G	BC139763|Fancg|60534|Fanconi anemia, complementation group G	AF112439|Fancg|60534|Fanconi anemia, complementation group G	BC141282|Fancg|60534|Fanconi anemia, complementation group G	AF406951|Fancg|60534|Fanconi anemia, complementation group G	NM_001163233|Fancg|60534|Fanconi anemia, complementation group G	NM_053081|Fancg|60534|Fanconi anemia, complementation group G
mm9_v1_chr5_+_106128934_106129078	0.126686	GLI1..3.p2	AK137459|Lrrc8d|231549|leucine rich repeat containing 8D	NM_001122768|Lrrc8d|231549|leucine rich repeat containing 8D	AK046249|Lrrc8d|231549|leucine rich repeat containing 8D	AK080722|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr2_+_157854434_157854436	0.126635	GLI1..3.p2	AK152125|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK152220|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr2_+_156588506_156588592	0.12655	GLI1..3.p2	AK179758|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)	AK186004|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr17_-_48061577_48061752	0.126131	GLI1..3.p2	BC057110|Foxp4|74123|forkhead box P4	NM_001110824|Foxp4|74123|forkhead box P4	NM_001110825|Foxp4|74123|forkhead box P4	NM_028767|Foxp4|74123|forkhead box P4
mm9_v1_chr2_+_4897167_4897179	0.126125	GLI1..3.p2	EU368184|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001113558|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001165932|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_026754|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr7_-_30033397_30033450	0.125967	GLI1..3.p2	AK033738|2200002D01Rik|72275|RIKEN cDNA 2200002D01 gene	BC086934|2200002D01Rik|72275|RIKEN cDNA 2200002D01 gene	AK008617|2200002D01Rik|72275|RIKEN cDNA 2200002D01 gene
mm9_v1_chr16_+_18426529_18426595	0.125473	GLI1..3.p2	BC013688|Txnrd2|26462|thioredoxin reductase 2	BC052157|Txnrd2|26462|thioredoxin reductase 2	BC052758|Txnrd2|26462|thioredoxin reductase 2	AK075828|Txnrd2|26462|thioredoxin reductase 2	BC029344|Txnrd2|26462|thioredoxin reductase 2	AF171053|Txnrd2|26462|thioredoxin reductase 2
mm9_v1_chr3_+_51219971_51220063	0.125456	GLI1..3.p2	AF510858|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit	BC050017|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr13_-_115248924_115248982	0.125341	GLI1..3.p2	AK083556|Fst|14313|follistatin	NM_008046|Fst|14313|follistatin	BC144926|Fst|14313|follistatin	BC145945|Fst|14313|follistatin
mm9_v1_chr12_+_85792371_85792472	0.125254	GLI1..3.p2	BC120496|Lin52|217708|lin-52 homolog (C. elegans)	BC137693|Lin52|217708|lin-52 homolog (C. elegans)	AK030923|Lin52|217708|lin-52 homolog (C. elegans)	NM_173756|Lin52|217708|lin-52 homolog (C. elegans)
mm9_v1_chr16_+_84835131_84835235	0.125171	GLI1..3.p2	AK139916|Gabpa|14390|GA repeat binding protein, alpha	AK145446|Gabpa|14390|GA repeat binding protein, alpha	AK150455|Gabpa|14390|GA repeat binding protein, alpha
mm9_v1_chr9_-_122775060_122775123	0.125	GLI1..3.p2	BC099930|Zfp445|235682|zinc finger protein 445	NM_173364|Zfp445|235682|zinc finger protein 445
mm9_v1_chr5_-_137548123_137548145	0.124184	GLI1..3.p2	BC054091|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	M33960|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	AK040662|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	NM_008871|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm9_v1_chr12_+_110779204_110779231	0.124154	GLI1..3.p2	AK145456|Meg3|17263|maternally expressed 3	AK155982|Meg3|17263|maternally expressed 3	AK157178|Meg3|17263|maternally expressed 3	Y13832|Meg3|17263|maternally expressed 3	BC094421|Meg3|17263|maternally expressed 3
mm9_v1_chr10_-_26095736_26095813	0.123177	GLI1..3.p2	BC082309|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK031398|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr11_+_114751354_114751532	0.123033	GLI1..3.p2	AK045869|Cd300a|217303|CD300A antigen	NM_170758|Cd300a|217303|CD300A antigen	BC139296|Cd300a|217303|CD300A antigen	BC139297|Cd300a|217303|CD300A antigen	AB095675|Cd300a|217303|CD300A antigen
mm9_v1_chr1_+_12682572_12682637	0.122707	GLI1..3.p2	AK028285|Sulf1|240725|sulfatase 1	AK045002|Sulf1|240725|sulfatase 1
mm9_v1_chr6_-_56873822_56873940	0.122618	GLI1..3.p2	AK011894|Nt5c3|107569|5'-nucleotidase, cytosolic III	AK011525|Nt5c3|107569|5'-nucleotidase, cytosolic III	NM_026004|Nt5c3|107569|5'-nucleotidase, cytosolic III
mm9_v1_chrX_-_92853721_92853847	0.12254	GLI1..3.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr7_+_53693190_53693196	0.122215	GLI1..3.p2	AK079373|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1
mm9_v1_chr5_-_92738919_92738964	0.12202	GLI1..3.p2	AK160646|Sdad1|231452|SDA1 domain containing 1
mm9_v1_chr1_+_154802198_154802230	0.121953	GLI1..3.p2	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr18_+_52927574_52927797	0.121908	GLI1..3.p2	BC130225|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	BC152544|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	AK160111|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	AF348447|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	AK046597|Gm5078|320291|predicted gene 5078	BC098489|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	AK044974|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	AK081942|Sncaip|67847|synuclein, alpha interacting protein (synphilin)
mm9_v1_chr8_-_37631772_37631789	0.121425	GLI1..3.p2	BC048730|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr4_-_118966945_118967127	0.121407	GLI1..3.p2	X57621|Ybx1|22608|Y box protein 1	M62867|Ybx1|22608|Y box protein 1	U33196|Ybx1|22608|Y box protein 1	BC029747|Ybx1|22608|Y box protein 1	BC013620|Ybx1|22608|Y box protein 1	M60419|Ybx1|22608|Y box protein 1	BC061634|Ybx1|22608|Y box protein 1	BC031472|Ybx1|22608|Y box protein 1	BC049977|Ybx1|22608|Y box protein 1	BC013450|Ybx1|22608|Y box protein 1	AK011890|Ybx1|22608|Y box protein 1	AK150821|Ybx1|22608|Y box protein 1	NM_011732|Ybx1|22608|Y box protein 1
mm9_v1_chr5_-_68238654_68238670	0.121266	GLI1..3.p2	DQ503480|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK151709|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503479|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_001038999|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	NM_009727|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	DQ503477|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr1_-_75260687_75260787	0.121151	GLI1..3.p2	U11812|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	BC068165|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK220467|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK163141|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	DQ832283|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK076223|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK139398|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	NM_008985|Ptprn|19275|protein tyrosine phosphatase, receptor type, N	AK041296|Ptprn|19275|protein tyrosine phosphatase, receptor type, N
mm9_v1_chr10_-_80306743_80306828	0.121002	GLI1..3.p2	BC072620|Lingo3|237403|leucine rich repeat and Ig domain containing 3	NM_001013758|Lingo3|237403|leucine rich repeat and Ig domain containing 3
mm9_v1_chr14_+_32955207_32955211	0.12075	GLI1..3.p2	NM_020597|Msmb|17695|beta-microseminoprotein
mm9_v1_chr5_-_140212063_140212302	0.120212	GLI1..3.p2	AK220308|Micall2|231830|MICAL-like 2	AK165558|Micall2|231830|MICAL-like 2	AB182579|Micall2|231830|MICAL-like 2	AK044547|Micall2|231830|MICAL-like 2	AK085948|Micall2|231830|MICAL-like 2	AK164043|Micall2|231830|MICAL-like 2	AK151086|Micall2|231830|MICAL-like 2	NM_174850|Micall2|231830|MICAL-like 2
mm9_v1_chr2_+_130275977_130276080	0.119907	GLI1..3.p2	AK010458|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_001163688|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	NM_008980|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK031690|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	AK165673|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC050930|Ptpra|19262|protein tyrosine phosphatase, receptor type, A	BC110683|Ptpra|19262|protein tyrosine phosphatase, receptor type, A
mm9_v1_chr8_-_97666364_97666472	0.119824	GLI1..3.p2	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr2_-_25079684_25079784	0.119184	GLI1..3.p2	AK006924|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr7_+_106417563_106417676	0.119076	GLI1..3.p2	
mm9_v1_chr8_-_73292296_73292389	0.119072	GLI1..3.p2	
mm9_v1_chr11_+_60166583_60166585	0.118657	GLI1..3.p2	
mm9_v1_chr10_+_21602148_21602174	0.118268	GLI1..3.p2	AK043284|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chr16_-_28929698_28929810	0.117465	GLI1..3.p2	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr4_-_4065205_4065229	0.117312	GLI1..3.p2	M13227|Penk|18619|preproenkephalin
mm9_v1_chr18_-_34666454_34666491	0.116392	GLI1..3.p2	AK029766|Fam13b|225358|family with sequence similarity 13, member B	BC031465|Fam13b|225358|family with sequence similarity 13, member B	NM_146084|Fam13b|225358|family with sequence similarity 13, member B	AK084711|Fam13b|225358|family with sequence similarity 13, member B
mm9_v1_chr8_+_131209533_131209569	0.116383	GLI1..3.p2	NM_010578|Itgb1|16412|integrin beta 1 (fibronectin receptor beta)
mm9_v1_chr4_-_102786828_102786903	0.116144	GLI1..3.p2	BC028975|Wdr78|242584|WD repeat domain 78	AK087151|E030030F06Rik|320382|RIKEN cDNA E030030F06 gene	NM_146254|Wdr78|242584|WD repeat domain 78
mm9_v1_chr18_-_43532846_43532925	0.115979	GLI1..3.p2	AK161509|Dpysl3|22240|dihydropyrimidinase-like 3	AK077000|Dpysl3|22240|dihydropyrimidinase-like 3	AK133040|Dpysl3|22240|dihydropyrimidinase-like 3	NM_001136086|Dpysl3|22240|dihydropyrimidinase-like 3
mm9_v1_chr1_-_75188292_75188308	0.115713	GLI1..3.p2	AK043624|Atg9a|245860|autophagy-related 9A (yeast)
mm9_v1_chr4_-_142889372_142889476	0.115667	GLI1..3.p2	NM_010329|Pdpn|14726|podoplanin	AK158855|Pdpn|14726|podoplanin
mm9_v1_chr4_-_154010435_154010475	0.115658	GLI1..3.p2	AK042640|5930403L14Rik|320939|RIKEN cDNA 5930403L14 gene	AK141913|5930403L14Rik|320939|RIKEN cDNA 5930403L14 gene
mm9_v1_chr11_-_115281230_115281278	0.115019	GLI1..3.p2	BC016547|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	BC081431|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	AK002376|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	NM_027862|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm9_v1_chrX_+_72341192_72341192	0.114926	GLI1..3.p2	NM_001030307|Dkc1|245474|dyskeratosis congenita 1, dyskerin homolog (human)
mm9_v1_chr5_+_118695228_118695301	0.114639	GLI1..3.p2	NM_001081236|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	AK090380|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104372|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene	BC104373|2410131K14Rik|76792|RIKEN cDNA 2410131K14 gene
mm9_v1_chr11_-_97914582_97914775	0.114533	GLI1..3.p2	AJ608761|Stac2|217154|SH3 and cysteine rich domain 2	BC029794|Stac2|217154|SH3 and cysteine rich domain 2	AK144433|Stac2|217154|SH3 and cysteine rich domain 2	AK079357|Stac2|217154|SH3 and cysteine rich domain 2	BC024864|Stac2|217154|SH3 and cysteine rich domain 2	AK078132|Stac2|217154|SH3 and cysteine rich domain 2	NM_146028|Stac2|217154|SH3 and cysteine rich domain 2
mm9_v1_chr7_+_129363009_129363009	0.11422	GLI1..3.p2	BC119202|2010110P09Rik|70261|RIKEN cDNA 2010110P09 gene	BC119204|2010110P09Rik|70261|RIKEN cDNA 2010110P09 gene	NM_027363|2010110P09Rik|70261|RIKEN cDNA 2010110P09 gene
mm9_v1_chr8_+_112302749_112302805	0.114127	GLI1..3.p2	BC006691|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr3_+_106524599_106524599	0.113739	GLI1..3.p2	AK030201|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	NM_001039488|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene	NM_028081|4933421E11Rik|321000|RIKEN cDNA 4933421E11 gene
mm9_v1_chr3_-_129763732_129763824	0.113162	GLI1..3.p2	BC046776|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)	NM_207209|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr8_+_125778094_125778211	0.112732	GLI1..3.p2	AK133363|Zfp276|57247|zinc finger protein (C2H2 type) 276	NM_020497|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK028939|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK043258|Zfp276|57247|zinc finger protein (C2H2 type) 276	BC066056|Zfp276|57247|zinc finger protein (C2H2 type) 276
mm9_v1_chr14_-_71026793_71026880	0.112007	GLI1..3.p2	AK155927|Epb4.9|13829|erythrocyte protein band 4.9	AK143840|Epb4.9|13829|erythrocyte protein band 4.9	AK165294|Epb4.9|13829|erythrocyte protein band 4.9	AK165204|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr12_+_4082739_4082786	0.111796	GLI1..3.p2	AY035893|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr14_+_55502433_55502449	0.111587	GLI1..3.p2	AK013244|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr8_+_114060341_114060576	0.110745	GLI1..3.p2	AK079338|Znrf1|170737|zinc and ring finger 1	NM_001168621|Znrf1|170737|zinc and ring finger 1	NM_001168622|Znrf1|170737|zinc and ring finger 1	NM_133206|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr13_-_92901606_92901650	0.110724	GLI1..3.p2	AK158472|Rasgrf2|19418|RAS protein-specific guanine nucleotide-releasing factor 2
mm9_v1_chr13_+_73764358_73764477	0.11065	GLI1..3.p2	AK133783|Tert|21752|telomerase reverse transcriptase	BC082327|Tert|21752|telomerase reverse transcriptase	AF051911|Tert|21752|telomerase reverse transcriptase	NM_009354|Tert|21752|telomerase reverse transcriptase	BC127068|Tert|21752|telomerase reverse transcriptase	AF073311|Tert|21752|telomerase reverse transcriptase
mm9_v1_chr8_-_48374755_48374779	0.110377	GLI1..3.p2	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr11_-_118216591_118216621	0.110086	GLI1..3.p2	M82858|Timp2|21858|tissue inhibitor of metalloproteinase 2	X62622|Timp2|21858|tissue inhibitor of metalloproteinase 2	BC049126|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr9_+_62705890_62705945	0.109985	GLI1..3.p2	AY061807|Calml4|75600|calmodulin-like 4	NM_001102468|Calml4|75600|calmodulin-like 4	NM_138304|Calml4|75600|calmodulin-like 4	AK008039|Calml4|75600|calmodulin-like 4	BC013541|Calml4|75600|calmodulin-like 4	AK146656|Calml4|75600|calmodulin-like 4	BC023475|Calml4|75600|calmodulin-like 4
mm9_v1_chr11_-_31724523_31724546	0.109914	GLI1..3.p2	AK085420|D630024D03Rik|414116|RIKEN cDNA D630024D03 gene	AK158233|D630024D03Rik|414116|RIKEN cDNA D630024D03 gene	AK158188|D630024D03Rik|414116|RIKEN cDNA D630024D03 gene
mm9_v1_chr16_-_18622449_18622495	0.109736	GLI1..3.p2	BC138156|Gp1bb|14724|glycoprotein Ib, beta polypeptide	BC145160|Gp1bb|14724|glycoprotein Ib, beta polypeptide	BC053108|Gp1bb|14724|glycoprotein Ib, beta polypeptide	NM_001001999|Gp1bb|14724|glycoprotein Ib, beta polypeptide	NM_010327|Gp1bb|14724|glycoprotein Ib, beta polypeptide
mm9_v1_chr12_-_70458134_70458151	0.109724	GLI1..3.p2	AK005212|Nemf|66244|nuclear export mediator factor	AK041458|Nemf|66244|nuclear export mediator factor	AK171652|Nemf|66244|nuclear export mediator factor	BC080716|Nemf|66244|nuclear export mediator factor
mm9_v1_chr2_+_61642509_61642690	0.109546	GLI1..3.p2	BC052737|Tbr1|21375|T-box brain gene 1	NM_009322|Tbr1|21375|T-box brain gene 1	AK158835|Tbr1|21375|T-box brain gene 1	BC058399|Tbr1|21375|T-box brain gene 1	U49251|Tbr1|21375|T-box brain gene 1
mm9_v1_chr14_+_68334154_68334168	0.109318	GLI1..3.p2	AK158922|Kctd9|105440|potassium channel tetramerisation domain containing 9	NM_001111028|Kctd9|105440|potassium channel tetramerisation domain containing 9	NM_134073|Kctd9|105440|potassium channel tetramerisation domain containing 9
mm9_v1_chr9_-_78226334_78226394	0.109124	GLI1..3.p2	AB283026|Ooep|67968|oocyte expressed protein homolog (dog)	BC062245|Ooep|67968|oocyte expressed protein homolog (dog)	AK133554|Ooep|67968|oocyte expressed protein homolog (dog)	AK135950|Ooep|67968|oocyte expressed protein homolog (dog)	AK136199|Ooep|67968|oocyte expressed protein homolog (dog)	AK145510|Ooep|67968|oocyte expressed protein homolog (dog)	AK010266|Ooep|67968|oocyte expressed protein homolog (dog)	AK010809|Ooep|67968|oocyte expressed protein homolog (dog)	DQ238107|Ooep|67968|oocyte expressed protein homolog (dog)	NM_026480|Ooep|67968|oocyte expressed protein homolog (dog)
mm9_v1_chrX_+_71516128_71516339	0.108941	GLI1..3.p2	NM_052835|Rpl10|110954|ribosomal protein 10	AK146217|Rpl10|110954|ribosomal protein 10	AK011022|Rpl10|110954|ribosomal protein 10	AK088777|Rpl10|110954|ribosomal protein 10	AK144831|Rpl10|110954|ribosomal protein 10	AK151416|Rpl10|110954|ribosomal protein 10	AK151655|Rpl10|110954|ribosomal protein 10	AK152123|Rpl10|110954|ribosomal protein 10	AK152854|Rpl10|110954|ribosomal protein 10	AK153345|Rpl10|110954|ribosomal protein 10	AK160618|Rpl10|110954|ribosomal protein 10	AK167966|Rpl10|110954|ribosomal protein 10	AK168854|Rpl10|110954|ribosomal protein 10	BC086917|Rpl10|110954|ribosomal protein 10	M93980|Rpl10|110954|ribosomal protein 10	AK014054|Rpl10|110954|ribosomal protein 10	AK151736|Rpl10|110954|ribosomal protein 10	AK166610|Rpl10|110954|ribosomal protein 10	AK168250|Rpl10|110954|ribosomal protein 10	AK012561|Rpl10|110954|ribosomal protein 10	AK167239|Rpl10|110954|ribosomal protein 10	BC092383|Rpl10|110954|ribosomal protein 10	BC098204|Rpl10|110954|ribosomal protein 10	X75312|Rpl10|110954|ribosomal protein 10	BC048872|Rpl10|110954|ribosomal protein 10	BC099437|Rpl10|110954|ribosomal protein 10	BC024901|Rpl10|110954|ribosomal protein 10	BC082293|Rpl10|110954|ribosomal protein 10	BC083327|Rpl10|110954|ribosomal protein 10	BC006068|Rpl10|110954|ribosomal protein 10
mm9_v1_chr17_+_36116868_36116882	0.108753	GLI1..3.p2	BC013243|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr14_+_21167383_21167391	0.108743	GLI1..3.p2	AK031973|Fam149b|105428|family with sequence similarity 149, member B	NM_001177633|Fam149b|105428|family with sequence similarity 149, member B	NM_172379|Fam149b|105428|family with sequence similarity 149, member B
mm9_v1_chr5_-_144493077_144493148	0.108522	GLI1..3.p2	NM_029749|Usp42|76800|ubiquitin specific peptidase 42
mm9_v1_chr3_+_88140189_88140194	0.108287	GLI1..3.p2	AK155787|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr6_+_127403631_127403740	0.108248	GLI1..3.p2	AK133697|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	BC040269|Parp11|101187|poly (ADP-ribose) polymerase family, member 11	NM_181402|Parp11|101187|poly (ADP-ribose) polymerase family, member 11
mm9_v1_chr1_-_132359292_132359319	0.107518	GLI1..3.p2	AK160994|Cd55|13136|CD55 antigen	AK030285|Cd55|13136|CD55 antigen	NM_010016|Cd55|13136|CD55 antigen
mm9_v1_chr2_+_153035426_153035671	0.107232	GLI1..3.p2	AK194607|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK208683|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr2_-_126501326_126501329	0.107012	GLI1..3.p2	AK040722|Gabpb1|14391|GA repeat binding protein, beta 1
mm9_v1_chr15_+_75740152_75740190	0.106918	GLI1..3.p2	AK051177|Tigd5|105734|tigger transposable element derived 5	BC099838|Tigd5|105734|tigger transposable element derived 5	NM_178646|Tigd5|105734|tigger transposable element derived 5	AK036241|Tigd5|105734|tigger transposable element derived 5	AK086663|Tigd5|105734|tigger transposable element derived 5	AK165093|Tigd5|105734|tigger transposable element derived 5	BC138289|Tigd5|105734|tigger transposable element derived 5
mm9_v1_chr16_-_91044623_91044646	0.106223	GLI1..3.p2	NM_026110|Gcfc1|67367|GC-rich sequence DNA-binding factor 1
mm9_v1_chr5_-_33560819_33560886	0.105926	GLI1..3.p2	BC017616|Spon2|100689|spondin 2, extracellular matrix protein	AK028987|Spon2|100689|spondin 2, extracellular matrix protein	AK042840|Spon2|100689|spondin 2, extracellular matrix protein	NM_133903|Spon2|100689|spondin 2, extracellular matrix protein
mm9_v1_chr2_-_60800963_60800981	0.10579	GLI1..3.p2	AB026569|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr9_-_106794266_106794289	0.105779	GLI1..3.p2	AK167580|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK131997|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	NM_029103|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC022761|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr10_-_90545046_90545173	0.105772	GLI1..3.p2	BC131683|Apaf1|11783|apoptotic peptidase activating factor 1	BC131684|Apaf1|11783|apoptotic peptidase activating factor 1	AK035569|Apaf1|11783|apoptotic peptidase activating factor 1
mm9_v1_chr1_+_51346198_51346215	0.105473	GLI1..3.p2	AK217731|Sdpr|20324|serum deprivation response	AK220044|Sdpr|20324|serum deprivation response
mm9_v1_chr8_+_18595573_18595592	0.105305	GLI1..3.p2	AK148021|Mcph1|244329|microcephaly, primary autosomal recessive 1	AK147997|Mcph1|244329|microcephaly, primary autosomal recessive 1	AY070216|Mcph1|244329|microcephaly, primary autosomal recessive 1
mm9_v1_chr16_-_4964233_4964329	0.10512	GLI1..3.p2	BC050929|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	AK012494|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	BC051143|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	AK089037|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3	NM_028301|Anks3|72615|ankyrin repeat and sterile alpha motif domain containing 3
mm9_v1_chr4_-_147278740_147278749	0.104883	GLI1..3.p2	AY123975|Mfn2|170731|mitofusin 2
mm9_v1_chr2_+_118727248_118727453	0.104736	GLI1..3.p2	NM_001045523|Bahd1|228536|bromo adjacent homology domain containing 1	AK152597|Bahd1|228536|bromo adjacent homology domain containing 1
mm9_v1_chr9_+_108957402_108957503	0.104566	GLI1..3.p2	AK081060|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK020877|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	AK018291|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	NM_026381|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	BC057089|Shisa5|66940|shisa homolog 5 (Xenopus laevis)	BC017600|Shisa5|66940|shisa homolog 5 (Xenopus laevis)
mm9_v1_chr12_+_77471173_77471252	0.104409	GLI1..3.p2	AK035036|Zbtb1|268564|zinc finger and BTB domain containing 1	AK049397|Zbtb1|268564|zinc finger and BTB domain containing 1	AY611626|Zbtb1|268564|zinc finger and BTB domain containing 1	NM_178744|Zbtb1|268564|zinc finger and BTB domain containing 1
mm9_v1_chr11_+_74644411_74644428	0.104259	GLI1..3.p2	NM_010813|Mnt|17428|max binding protein	U77356|Mnt|17428|max binding protein
mm9_v1_chr17_+_23810567_23810574	0.104259	GLI1..3.p2	AK013438|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)	NM_181821|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)
mm9_v1_chr11_+_78640103_78640114	0.10421	GLI1..3.p2	BC130224|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK009070|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr4_-_125839844_125839908	0.104204	GLI1..3.p2	BC039777|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	BC053421|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	AK076962|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	AK011430|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	BC025637|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	NM_025856|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene
mm9_v1_chr17_+_26917976_26918037	0.103587	GLI1..3.p2	NM_172149|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	AK031208|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	AK170908|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	BC086888|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1	AY547731|Bnip1|224630|BCL2/adenovirus E1B interacting protein 1
mm9_v1_chr6_+_124959685_124959822	0.103517	GLI1..3.p2	AK086185|Zfp384|269800|zinc finger protein 384	BC064013|Zfp384|269800|zinc finger protein 384	NM_175557|Zfp384|269800|zinc finger protein 384
mm9_v1_chrX_-_99700697_99700735	0.103247	GLI1..3.p2	AK131998|Hdac8|70315|histone deacetylase 8
mm9_v1_chr7_+_86956134_86956146	0.103189	GLI1..3.p2	AK146740|Mesp2|17293|mesoderm posterior 2
mm9_v1_chr6_-_115201790_115201797	0.103137	GLI1..3.p2	AF282730|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr7_+_80520360_80520429	0.102858	GLI1..3.p2	AK082560|Rgma|244058|RGM domain family, member A	BC059072|Rgma|244058|RGM domain family, member A	NM_177740|Rgma|244058|RGM domain family, member A
mm9_v1_chr1_+_51345952_51345993	0.102827	GLI1..3.p2	AK035324|Sdpr|20324|serum deprivation response	BC027005|Sdpr|20324|serum deprivation response	NM_138741|Sdpr|20324|serum deprivation response	AK132324|Sdpr|20324|serum deprivation response
mm9_v1_chr5_+_73039034_73039056	0.102787	GLI1..3.p2	AK075654|Nipal1|70701|NIPA-like domain containing 1	NM_001081205|Nipal1|70701|NIPA-like domain containing 1
mm9_v1_chr15_+_5135711_5135737	0.102783	GLI1..3.p2	AK013464|Ttc33|67515|tetratricopeptide repeat domain 33	BC017533|Ttc33|67515|tetratricopeptide repeat domain 33	AK075643|Ttc33|67515|tetratricopeptide repeat domain 33
mm9_v1_chr9_-_110310638_110310737	0.102345	GLI1..3.p2	NM_001081043|Ptpn23|104831|protein tyrosine phosphatase, non-receptor type 23
mm9_v1_chr12_+_81619976_81620155	0.102184	GLI1..3.p2	NM_001081421|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB045325|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AK138883|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1	AB175683|Galntl1|108760|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1
mm9_v1_chr16_-_14291427_14291500	0.101789	GLI1..3.p2	S81516|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	L25860|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137226|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85923|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	D85924|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK137716|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK085742|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	AK173045|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_001161775|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle	NM_013607|Myh11|17880|myosin, heavy polypeptide 11, smooth muscle
mm9_v1_chr2_-_66473008_66473018	0.101515	GLI1..3.p2	NM_018852|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha	AK141871|Scn9a|20274|sodium channel, voltage-gated, type IX, alpha
mm9_v1_chr2_+_127161893_127161939	0.101428	GLI1..3.p2	AK088059|Dusp2|13537|dual specificity phosphatase 2	AK134067|Dusp2|13537|dual specificity phosphatase 2	NM_010090|Dusp2|13537|dual specificity phosphatase 2	BC048696|Dusp2|13537|dual specificity phosphatase 2	L11330|Dusp2|13537|dual specificity phosphatase 2
mm9_v1_chr16_-_91011280_91011324	0.101358	GLI1..3.p2	AK020816|Synj1|104015|synaptojanin 1	AK080946|Synj1|104015|synaptojanin 1	AK049822|Synj1|104015|synaptojanin 1
mm9_v1_chr11_-_98054573_98054589	0.101337	GLI1..3.p2	BC021440|Med1|19014|mediator complex subunit 1	BC079636|Med1|19014|mediator complex subunit 1	AK147199|Med1|19014|mediator complex subunit 1	AK005207|Med1|19014|mediator complex subunit 1
mm9_v1_chr4_+_100449274_100449299	0.101273	GLI1..3.p2	AK080923|Cachd1|320508|cache domain containing 1	BC058676|Cachd1|320508|cache domain containing 1	NM_198037|Cachd1|320508|cache domain containing 1
mm9_v1_chr9_+_100544186_100544228	0.101254	GLI1..3.p2	BC069841|Stag1|20842|stromal antigen 1
mm9_v1_chr8_-_87596005_87596037	0.101166	GLI1..3.p2	AK082081|Dhps|330817|deoxyhypusine synthase
mm9_v1_chr1_+_51346086_51346100	0.101011	GLI1..3.p2	AK084096|Sdpr|20324|serum deprivation response
mm9_v1_chr19_+_10116001_10116070	0.100962	GLI1..3.p2	NM_021890|Fads3|60527|fatty acid desaturase 3	AK090042|Fads3|60527|fatty acid desaturase 3	AK172509|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr9_-_56008595_56008764	0.100957	GLI1..3.p2	AK089494|Tspan3|56434|tetraspanin 3	AK154919|Tspan3|56434|tetraspanin 3	AB009021|Tspan3|56434|tetraspanin 3	AF133427|Tspan3|56434|tetraspanin 3	AB072450|Tspan3|56434|tetraspanin 3	AK053325|Tspan3|56434|tetraspanin 3	AK141951|Tspan3|56434|tetraspanin 3	AK006798|Tspan3|56434|tetraspanin 3	AK152175|Tspan3|56434|tetraspanin 3
mm9_v1_chr7_+_25155279_25155362	0.100951	GLI1..3.p2	AK010943|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	NM_001163510|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	NM_008433|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	AK155910|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	BC010274|Kcnn4|16534|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm9_v1_chr7_+_82600419_82600490	0.100794	GLI1..3.p2	NM_029332|Akap13|75547|A kinase (PRKA) anchor protein 13	AK157986|Akap13|75547|A kinase (PRKA) anchor protein 13	AK172125|Akap13|75547|A kinase (PRKA) anchor protein 13
mm9_v1_chr3_+_68495345_68495448	0.100516	GLI1..3.p2	M86672|Il12a|16159|interleukin 12a	NM_008351|Il12a|16159|interleukin 12a	BC116851|Il12a|16159|interleukin 12a	BC116855|Il12a|16159|interleukin 12a	AF128210|Il12a|16159|interleukin 12a	AF128211|Il12a|16159|interleukin 12a	AF128212|Il12a|16159|interleukin 12a	AF128213|Il12a|16159|interleukin 12a
mm9_v1_chr13_+_6547412_6547442	0.100484	GLI1..3.p2	AK147837|Pitrm1|69617|pitrilysin metallepetidase 1	AK129292|Pitrm1|69617|pitrilysin metallepetidase 1	AK164235|Pitrm1|69617|pitrilysin metallepetidase 1
mm9_v1_chr5_-_138182307_138182329	0.100339	GLI1..3.p2	AK141276|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene
mm9_v1_chr17_-_46281016_46281172	0.0997508	GLI1..3.p2	AK165820|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	BC019423|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	AK006440|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)	NM_029338|Rsph9|75564|radial spoke head 9 homolog (Chlamydomonas)
mm9_v1_chr8_+_122386155_122386279	0.0993424	GLI1..3.p2	AK164240|Klhl36|234796|kelch-like 36 (Drosophila)	AK164831|Klhl36|234796|kelch-like 36 (Drosophila)	AK157027|Klhl36|234796|kelch-like 36 (Drosophila)	BC025816|Klhl36|234796|kelch-like 36 (Drosophila)	NM_146219|Klhl36|234796|kelch-like 36 (Drosophila)	AK131135|Klhl36|234796|kelch-like 36 (Drosophila)
mm9_v1_chr18_-_34166105_34166254	0.0992485	GLI1..3.p2	BC089158|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a	AK140485|Epb4.1l4a|13824|erythrocyte protein band 4.1-like 4a
mm9_v1_chr19_-_7501451_7501548	0.0992448	GLI1..3.p2	AK211707|Rtn3|20168|reticulon 3
mm9_v1_chr12_+_105990395_105990425	0.0989328	GLI1..3.p2	AK134511|6230426M11Rik|668056|RIKEN cDNA 6230426M11 gene
mm9_v1_chr11_-_78311204_78311255	0.098798	GLI1..3.p2	BC058534|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	BC080850|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_001168521|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_172795|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1
mm9_v1_chr16_+_13265171_13265171	0.0987488	GLI1..3.p2	BC028459|Mkl2|239719|MKL/myocardin-like 2	NM_181860|Mkl2|239719|MKL/myocardin-like 2
mm9_v1_chr4_-_117354829_117354891	0.0986056	GLI1..3.p2	AF438610|Dmap1|66233|DNA methyltransferase 1-associated protein 1	NM_023178|Dmap1|66233|DNA methyltransferase 1-associated protein 1	AK012055|Dmap1|66233|DNA methyltransferase 1-associated protein 1	AK005270|Dmap1|66233|DNA methyltransferase 1-associated protein 1
mm9_v1_chr17_-_33170297_33170352	0.0980504	GLI1..3.p2	BC056193|Zfp763|73451|zinc finger protein 763	AK088750|Zfp763|73451|zinc finger protein 763	AK141711|Zfp763|73451|zinc finger protein 763	NM_028543|Zfp763|73451|zinc finger protein 763
mm9_v1_chr8_+_121970569_121970618	0.0979591	GLI1..3.p2	AF411253|Necab2|117148|N-terminal EF-hand calcium binding protein 2	NM_054095|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr7_-_105326751_105326764	0.0975534	GLI1..3.p2	AK155179|Capn5|12337|calpain 5
mm9_v1_chr8_+_121971001_121971009	0.0974915	GLI1..3.p2	AK082727|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr8_+_35217685_35217743	0.097457	GLI1..3.p2	AK007787|Tmem66|67887|transmembrane protein 66	AK075744|Tmem66|67887|transmembrane protein 66	AK088728|Tmem66|67887|transmembrane protein 66
mm9_v1_chr10_+_22026565_22026590	0.0971942	GLI1..3.p2	AK083313|C920009B18Rik|606736|RIKEN cDNA C920009B18 gene	AK083339|C920009B18Rik|606736|RIKEN cDNA C920009B18 gene	AK171185|C920009B18Rik|606736|RIKEN cDNA C920009B18 gene
mm9_v1_chr2_+_174155515_174155590	0.0971289	GLI1..3.p2	BC038067|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK078037|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK159563|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	NM_201616|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr2_-_174298441_174298508	0.0965801	GLI1..3.p2	BC026968|Slmo2|66390|slowmo homolog 2 (Drosophila)	NM_025531|Slmo2|66390|slowmo homolog 2 (Drosophila)
mm9_v1_chr12_+_82046496_82046547	0.0965782	GLI1..3.p2	AK002267|Srsf5|20384|serine/arginine-rich splicing factor 5	AK005552|Srsf5|20384|serine/arginine-rich splicing factor 5	AK007729|Srsf5|20384|serine/arginine-rich splicing factor 5	AK142009|Srsf5|20384|serine/arginine-rich splicing factor 5	AK146624|Srsf5|20384|serine/arginine-rich splicing factor 5	AK078065|Srsf5|20384|serine/arginine-rich splicing factor 5	BC082593|Srsf5|20384|serine/arginine-rich splicing factor 5	BC085267|Srsf5|20384|serine/arginine-rich splicing factor 5	BC038624|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr18_+_59334993_59335106	0.096348	GLI1..3.p2	NM_001081328|Chsy3|78923|chondroitin sulfate synthase 3	AK043732|Chsy3|78923|chondroitin sulfate synthase 3	AK044099|Chsy3|78923|chondroitin sulfate synthase 3	AK038429|Chsy3|78923|chondroitin sulfate synthase 3	AK048196|Chsy3|78923|chondroitin sulfate synthase 3	AK220519|Chsy3|78923|chondroitin sulfate synthase 3
mm9_v1_chr2_-_38860587_38860611	0.0962442	GLI1..3.p2	BC085091|Rpl35|66489|ribosomal protein L35
mm9_v1_chr4_+_118808330_118808432	0.0956391	GLI1..3.p2	S77924|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr8_-_73223897_73223993	0.0955967	GLI1..3.p2	AK135112|Gm11175|100303737|predicted gene 11175
mm9_v1_chr11_-_69373555_69373681	0.0951736	GLI1..3.p2	BC052001|Efnb3|13643|ephrin B3	BC058617|Efnb3|13643|ephrin B3	AK048305|Efnb3|13643|ephrin B3
mm9_v1_chr19_+_5460588_5460693	0.0951496	GLI1..3.p2	AK008093|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK028029|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK008132|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK012629|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	BC049284|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AK019399|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	BC031716|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	AF270700|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein	NM_021438|Fibp|58249|fibroblast growth factor (acidic) intracellular binding protein
mm9_v1_chr8_-_20020350_20020421	0.0950501	GLI1..3.p2	BC025151|2610005L07Rik|381598|cadherin 11 pseudogene	AK009182|2610005L07Rik|381598|cadherin 11 pseudogene	AK160987|2610005L07Rik|381598|cadherin 11 pseudogene	AK131627|2610005L07Rik|381598|cadherin 11 pseudogene	AK035187|2610005L07Rik|381598|cadherin 11 pseudogene
mm9_v1_chr2_-_167470382_167470477	0.0948898	GLI1..3.p2	
mm9_v1_chr16_+_3744231_3744292	0.0945655	GLI1..3.p2	BC011505|Zfp263|74120|zinc finger protein 263	BC056222|Zfp263|74120|zinc finger protein 263
mm9_v1_chr2_+_124435841_124435850	0.0944897	GLI1..3.p2	AK052232|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr19_+_7495023_7495107	0.0944399	GLI1..3.p2	BC096549|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene	BC096638|2700081O15Rik|108899|RIKEN cDNA 2700081O15 gene
mm9_v1_chr19_-_8797529_8797682	0.093772	GLI1..3.p2	AK186746|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
mm9_v1_chr5_+_58111361_58111407	0.0937631	GLI1..3.p2	AK165115|Pcdh7|54216|protocadherin 7
mm9_v1_chr2_-_25052129_25052179	0.0934458	GLI1..3.p2	AK154508|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	AK043559|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	AK082899|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	AK172142|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	AK171551|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene
mm9_v1_chr4_+_149656024_149656024	0.0934126	GLI1..3.p2	NM_001085492|Rere|68703|arginine glutamic acid dipeptide (RE) repeats
mm9_v1_chrX_+_34335651_34335798	0.0931982	GLI1..3.p2	BC004570|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	BC086756|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	U10404|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK188826|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK195999|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr7_+_135390325_135390446	0.0930705	GLI1..3.p2	DQ143891|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	BC056362|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	NM_009365|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1
mm9_v1_chr3_+_37319188_37319238	0.0930557	GLI1..3.p2	NM_001163511|Spata5|57815|spermatogenesis associated 5	NM_021343|Spata5|57815|spermatogenesis associated 5	AF049099|Spata5|57815|spermatogenesis associated 5	BC145302|Spata5|57815|spermatogenesis associated 5	BC145309|Spata5|57815|spermatogenesis associated 5	AK011111|Spata5|57815|spermatogenesis associated 5
mm9_v1_chr2_-_104656852_104656885	0.0929939	GLI1..3.p2	NM_001123327|Qser1|99003|glutamine and serine rich 1
mm9_v1_chr12_-_81213930_81214002	0.0929663	GLI1..3.p2	M58566|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC037998|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	BC016621|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK077855|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK021295|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK036950|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	AK051035|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1	NM_007564|Zfp36l1|12192|zinc finger protein 36, C3H type-like 1
mm9_v1_chr2_+_49307207_49307338	0.0926574	GLI1..3.p2	AK047947|Epc2|227867|enhancer of polycomb homolog 2 (Drosophila)
mm9_v1_chr16_-_17840640_17840707	0.0926431	GLI1..3.p2	AK190829|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK193104|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK195067|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK196273|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK198182|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK202437|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK204997|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr13_-_41315751_41315817	0.0923784	GLI1..3.p2	AK029855|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	BC098215|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AF170908|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	NM_019423|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK044770|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	AK050397|Elovl2|54326|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm9_v1_chr17_-_36034316_36034327	0.0922968	GLI1..3.p2	NM_001033630|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr17_-_13898366_13898400	0.0917552	GLI1..3.p2	AK012419|2700054A10Rik|72578|RIKEN cDNA 2700054A10 gene	AK005879|Tcte2|21646|t-complex-associated testis expressed 2	AK008572|Tcte2|21646|t-complex-associated testis expressed 2	BC049646|Tcte2|21646|t-complex-associated testis expressed 2	BC092528|Tcte2|21646|t-complex-associated testis expressed 2	NM_022311|Tcte2|21646|t-complex-associated testis expressed 2
mm9_v1_chr9_-_77956833_77956859	0.0917105	GLI1..3.p2	AK077607|Fbxo9|71538|f-box protein 9	NM_001081490|Fbxo9|71538|f-box protein 9
mm9_v1_chr4_+_149611305_149611392	0.0915877	GLI1..3.p2	NM_023119|Eno1|13806|enolase 1, alpha non-neuron	AK002336|Eno1|13806|enolase 1, alpha non-neuron	AK014335|Eno1|13806|enolase 1, alpha non-neuron	AK147987|Eno1|13806|enolase 1, alpha non-neuron	AK150161|Eno1|13806|enolase 1, alpha non-neuron	AK150192|Eno1|13806|enolase 1, alpha non-neuron	AK153321|Eno1|13806|enolase 1, alpha non-neuron	AK002322|Eno1|13806|enolase 1, alpha non-neuron	BC003934|Eno1|13806|enolase 1, alpha non-neuron	AK204692|Eno1|13806|enolase 1, alpha non-neuron	AK088788|Eno1|13806|enolase 1, alpha non-neuron	X52379|Eno1|13806|enolase 1, alpha non-neuron	BC003891|Eno1|13806|enolase 1, alpha non-neuron	BC010685|Eno1|13806|enolase 1, alpha non-neuron	BC083334|Eno1|13806|enolase 1, alpha non-neuron	BC024644|Eno1|13806|enolase 1, alpha non-neuron	BC039179|Eno1|13806|enolase 1, alpha non-neuron
mm9_v1_chr5_-_29704731_29704866	0.0911689	GLI1..3.p2	AF190665|Lmbr1|56873|limb region 1	AF190666|Lmbr1|56873|limb region 1	BC016110|Lmbr1|56873|limb region 1	AK030631|Lmbr1|56873|limb region 1
mm9_v1_chr12_-_86715612_86715842	0.0911642	GLI1..3.p2	AK150605|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152656|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC064755|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC085097|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK003676|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK084117|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152643|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	NM_026775|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)
mm9_v1_chr2_-_25439345_25439437	0.0911195	GLI1..3.p2	
mm9_v1_chr9_-_106794234_106794259	0.0909901	GLI1..3.p2	AB009291|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK165646|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	AK014338|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor	BC038901|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr2_-_121181055_121181098	0.0906872	GLI1..3.p2	AK160847|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr11_+_54117299_54117368	0.0904232	GLI1..3.p2	AY786363|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK147283|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	NM_001033598|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	BC016114|Acsl6|216739|acyl-CoA synthetase long-chain family member 6
mm9_v1_chr11_+_53164287_53164334	0.0903253	GLI1..3.p2	AF190449|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr11_+_35582969_35582996	0.0903003	GLI1..3.p2	AK039865|Pank3|211347|pantothenate kinase 3	NM_145962|Pank3|211347|pantothenate kinase 3
mm9_v1_chr9_+_87039136_87039147	0.0899617	GLI1..3.p2	NM_001101482|Mrap2|244958|melanocortin 2 receptor accessory protein 2	NM_001177731|Mrap2|244958|melanocortin 2 receptor accessory protein 2
mm9_v1_chr8_-_35209773_35209872	0.0898499	GLI1..3.p2	AK159401|Leprotl1|68192|leptin receptor overlapping transcript-like 1	BC004677|Leprotl1|68192|leptin receptor overlapping transcript-like 1	NM_026609|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK003329|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK153277|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK075740|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK150289|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK154712|Leprotl1|68192|leptin receptor overlapping transcript-like 1	AK013870|Leprotl1|68192|leptin receptor overlapping transcript-like 1
mm9_v1_chr4_-_88367207_88367304	0.0898189	GLI1..3.p2	
mm9_v1_chr4_-_151822815_151822985	0.089697	GLI1..3.p2	AK152613|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	L48983|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	AK157053|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr16_-_21947587_21947627	0.0895789	GLI1..3.p2	AK013518|Tmem41a|66664|transmembrane protein 41a	BC011512|Tmem41a|66664|transmembrane protein 41a	AK007685|Tmem41a|66664|transmembrane protein 41a	NM_025693|Tmem41a|66664|transmembrane protein 41a
mm9_v1_chr1_-_37921651_37921692	0.0895516	GLI1..3.p2	AK170053|Tsga10|211484|testis specific 10
mm9_v1_chr9_-_44076480_44076681	0.0895117	GLI1..3.p2	BC050054|Nlrx1|270151|NLR family member X1	AK141296|Nlrx1|270151|NLR family member X1	AK145988|Nlrx1|270151|NLR family member X1	NM_178420|Nlrx1|270151|NLR family member X1	AK166689|Nlrx1|270151|NLR family member X1	NM_001163742|Nlrx1|270151|NLR family member X1
mm9_v1_chr13_-_115249048_115249158	0.089496	GLI1..3.p2	AK079916|Fst|14313|follistatin
mm9_v1_chr11_+_74644441_74644466	0.0894288	GLI1..3.p2	AK147933|Mnt|17428|max binding protein
mm9_v1_chr14_+_105658009_105658029	0.0893412	GLI1..3.p2	AK049678|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr1_+_74283079_74283111	0.0889265	GLI1..3.p2	AK152356|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr2_-_32143495_32143593	0.0885584	GLI1..3.p2	AK018775|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK166608|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK041567|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK013517|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	BC021748|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK088274|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK039840|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AK031907|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	AB597964|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene	NM_175190|2900010J23Rik|72931|RIKEN cDNA 2900010J23 gene
mm9_v1_chr8_+_112302811_112302862	0.0881526	GLI1..3.p2	
mm9_v1_chr12_+_18521315_18521452	0.0880459	GLI1..3.p2	AK017753|5730507C01Rik|236366|RIKEN cDNA 5730507C01 gene	AK139861|5730507C01Rik|236366|RIKEN cDNA 5730507C01 gene	NM_001033157|5730507C01Rik|236366|RIKEN cDNA 5730507C01 gene	BC150925|5730507C01Rik|236366|RIKEN cDNA 5730507C01 gene
mm9_v1_chr5_+_109058850_109059020	0.0878848	GLI1..3.p2	AK034579|Tmem175|72392|transmembrane protein 175	AK038865|Tmem175|72392|transmembrane protein 175	AK076446|Tmem175|72392|transmembrane protein 175	AK082765|Tmem175|72392|transmembrane protein 175	AK170273|Tmem175|72392|transmembrane protein 175	AK013879|Tmem175|72392|transmembrane protein 175	BC005542|Tmem175|72392|transmembrane protein 175
mm9_v1_chr6_-_28211910_28211939	0.0878468	GLI1..3.p2	BC066073|Zfp800|627049|zinc finger protein 800
mm9_v1_chr10_+_83185609_83185706	0.0874459	GLI1..3.p2	BC048550|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	NM_001145198|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK012407|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene	AK005183|1500009L16Rik|69784|RIKEN cDNA 1500009L16 gene
mm9_v1_chr11_-_115281223_115281228	0.0873226	GLI1..3.p2	AF354051|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	AK088617|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm9_v1_chr5_+_116096907_116097001	0.0867805	GLI1..3.p2	
mm9_v1_chr2_-_121180807_121180816	0.0865402	GLI1..3.p2	AK078268|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK162596|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK046696|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr3_+_14533787_14533872	0.0864042	GLI1..3.p2	AK004646|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_001163579|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_001163580|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	NM_028915|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC138734|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC138735|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC099680|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	BC061202|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK030355|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK016559|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK173256|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1	AK029563|Lrrcc1|71710|leucine rich repeat and coiled-coil domain containing 1
mm9_v1_chr14_-_52533039_52533074	0.0861663	GLI1..3.p2	AK158900|Ndrg2|29811|N-myc downstream regulated gene 2
mm9_v1_chr12_+_21117704_21117848	0.0861037	GLI1..3.p2	AK172944|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC096022|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr6_+_86145477_86145494	0.0859195	GLI1..3.p2	AK162680|Tgfa|21802|transforming growth factor alpha	M92420|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr15_+_74346624_74346672	0.0857789	GLI1..3.p2	AK147607|Bai1|107831|brain-specific angiogenesis inhibitor 1	NM_174991|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147456|Bai1|107831|brain-specific angiogenesis inhibitor 1	AK147459|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr15_-_96529998_96530181	0.085512	GLI1..3.p2	BC041108|Slc38a2|67760|solute carrier family 38, member 2	BC027259|Slc38a2|67760|solute carrier family 38, member 2	AK129342|Slc38a2|67760|solute carrier family 38, member 2	BC048178|Slc38a2|67760|solute carrier family 38, member 2	NM_175121|Slc38a2|67760|solute carrier family 38, member 2	AK017145|Slc38a2|67760|solute carrier family 38, member 2	AK030917|Slc38a2|67760|solute carrier family 38, member 2	AK031615|Slc38a2|67760|solute carrier family 38, member 2	AK047403|Slc38a2|67760|solute carrier family 38, member 2
mm9_v1_chr10_-_80260968_80261046	0.0852305	GLI1..3.p2	BC005565|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK150144|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK051734|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK020621|Plekhj1|78670|pleckstrin homology domain containing, family J member 1
mm9_v1_chr12_-_20821426_20821639	0.0851436	GLI1..3.p2	AK006529|1700030C10Rik|69513|RIKEN cDNA 1700030C10 gene	AK041326|1700030C10Rik|69513|RIKEN cDNA 1700030C10 gene	BC050987|1700030C10Rik|69513|RIKEN cDNA 1700030C10 gene	BC100365|1700030C10Rik|69513|RIKEN cDNA 1700030C10 gene
mm9_v1_chr2_-_155649645_155649731	0.0851382	GLI1..3.p2	AK212176|Eif6|16418|eukaryotic translation initiation factor 6	AK181580|Eif6|16418|eukaryotic translation initiation factor 6	AK177151|Eif6|16418|eukaryotic translation initiation factor 6	Y11460|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr7_+_28043932_28043952	0.0845974	GLI1..3.p2	BC098097|Numbl|18223|numb-like	BC068116|Numbl|18223|numb-like
mm9_v1_chr11_+_75345598_75345772	0.0839913	GLI1..3.p2	AK171104|Slc43a2|215113|solute carrier family 43, member 2	AK172685|Slc43a2|215113|solute carrier family 43, member 2	AK159144|Slc43a2|215113|solute carrier family 43, member 2	AK165721|Slc43a2|215113|solute carrier family 43, member 2	AK090207|Slc43a2|215113|solute carrier family 43, member 2	AK143773|Slc43a2|215113|solute carrier family 43, member 2
mm9_v1_chr7_-_134028184_134028216	0.0839596	GLI1..3.p2	BC085152|Taok2|381921|TAO kinase 2	AK031190|Taok2|381921|TAO kinase 2
mm9_v1_chr6_+_83106466_83106494	0.0838948	GLI1..3.p2	BC126949|1700003E16Rik|71837|RIKEN cDNA 1700003E16 gene
mm9_v1_chr2_+_35516774_35517011	0.083804	GLI1..3.p2	AY305656|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr2_+_162758440_162758589	0.0836254	GLI1..3.p2	AK051608|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr11_+_85166665_85166722	0.0832539	GLI1..3.p2	NM_001166642|Bcas3|192197|breast carcinoma amplified sequence 3	NM_001166643|Bcas3|192197|breast carcinoma amplified sequence 3	NM_138681|Bcas3|192197|breast carcinoma amplified sequence 3	AK034117|Bcas3|192197|breast carcinoma amplified sequence 3	AF313800|Bcas3|192197|breast carcinoma amplified sequence 3	BC050233|Bcas3|192197|breast carcinoma amplified sequence 3	AK160127|Bcas3|192197|breast carcinoma amplified sequence 3	BC028339|Bcas3|192197|breast carcinoma amplified sequence 3	BC086693|Bcas3|192197|breast carcinoma amplified sequence 3	BC060690|Bcas3|192197|breast carcinoma amplified sequence 3	AK171964|Bcas3|192197|breast carcinoma amplified sequence 3	AK032423|Bcas3|192197|breast carcinoma amplified sequence 3	AK157222|Bcas3|192197|breast carcinoma amplified sequence 3	BC038173|Bcas3|192197|breast carcinoma amplified sequence 3
mm9_v1_chr7_-_97089575_97089723	0.0829871	GLI1..3.p2	BC083330|l7Rn6|67669|lethal, Chr 7, Rinchik 6	BC003916|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK012166|l7Rn6|67669|lethal, Chr 7, Rinchik 6	DQ196315|l7Rn6|67669|lethal, Chr 7, Rinchik 6	DQ196316|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK002306|l7Rn6|67669|lethal, Chr 7, Rinchik 6	NM_026304|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK003324|l7Rn6|67669|lethal, Chr 7, Rinchik 6	AK008604|l7Rn6|67669|lethal, Chr 7, Rinchik 6
mm9_v1_chr8_+_47702617_47702644	0.0829809	GLI1..3.p2	AK146226|Casp3|12367|caspase 3
mm9_v1_chr7_-_148042164_148042281	0.0829397	GLI1..3.p2	AK011508|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	BC019730|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	AK161239|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like	NM_018742|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr7_+_109118356_109118356	0.0829364	GLI1..3.p2	BC049791|Numa1|101706|nuclear mitotic apparatus protein 1	NM_133947|Numa1|101706|nuclear mitotic apparatus protein 1
mm9_v1_chr13_+_3477477_3477548	0.0826219	GLI1..3.p2	AK084238|2810429I04Rik|76937|RIKEN cDNA 2810429I04 gene	AK013191|2810429I04Rik|76937|RIKEN cDNA 2810429I04 gene	AK034854|2810429I04Rik|76937|RIKEN cDNA 2810429I04 gene	AK087718|2810429I04Rik|76937|RIKEN cDNA 2810429I04 gene	AK043092|2810429I04Rik|76937|RIKEN cDNA 2810429I04 gene	AK031301|2810429I04Rik|76937|RIKEN cDNA 2810429I04 gene	AK043278|2810429I04Rik|76937|RIKEN cDNA 2810429I04 gene
mm9_v1_chr4_-_147284260_147284322	0.0825485	GLI1..3.p2	AK185340|Plod1|18822|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm9_v1_chr11_-_108205158_108205183	0.0824008	GLI1..3.p2	X52684|Prkca|18750|protein kinase C, alpha	X52685|Prkca|18750|protein kinase C, alpha
mm9_v1_chr4_+_48598013_48598089	0.0822418	GLI1..3.p2	BC057598|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1	NM_021436|Tmeff1|230157|transmembrane protein with EGF-like and two follistatin-like domains 1
mm9_v1_chr3_+_54496921_54497078	0.0822208	GLI1..3.p2	AF139179|Fam48a|56790|family with sequence similarity 48, member A	NM_019995|Fam48a|56790|family with sequence similarity 48, member A	BC052702|Fam48a|56790|family with sequence similarity 48, member A	AK218402|Fam48a|56790|family with sequence similarity 48, member A
mm9_v1_chr10_-_90545483_90545514	0.0821162	GLI1..3.p2	AK220340|Apaf1|11783|apoptotic peptidase activating factor 1	NM_001042558|Apaf1|11783|apoptotic peptidase activating factor 1	NM_009684|Apaf1|11783|apoptotic peptidase activating factor 1	BC045144|Apaf1|11783|apoptotic peptidase activating factor 1
mm9_v1_chr4_+_58298833_58298983	0.081515	GLI1..3.p2	NM_001037127|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037128|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037129|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001037130|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_001165996|Musk|18198|muscle, skeletal, receptor tyrosine kinase	NM_010944|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37708|Musk|18198|muscle, skeletal, receptor tyrosine kinase	U37709|Musk|18198|muscle, skeletal, receptor tyrosine kinase	BC100342|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY360453|Musk|18198|muscle, skeletal, receptor tyrosine kinase	X86444|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955296|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955297|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY955298|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956403|Musk|18198|muscle, skeletal, receptor tyrosine kinase	AY956404|Musk|18198|muscle, skeletal, receptor tyrosine kinase
mm9_v1_chr3_+_89263237_89263263	0.0813931	GLI1..3.p2	AK003607|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chr5_-_92471976_92472071	0.0812713	GLI1..3.p2	BC117894|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	BC117895|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029066|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	NM_177270|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029065|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	NM_016912|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK144574|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm9_v1_chr3_-_107957795_107957821	0.081065	GLI1..3.p2	AK032627|Gpr61|229714|G protein-coupled receptor 61	AK133702|Gpr61|229714|G protein-coupled receptor 61	NM_175470|Gpr61|229714|G protein-coupled receptor 61
mm9_v1_chr4_+_126431013_126431096	0.0808916	GLI1..3.p2	NM_001035526|AU040320|100317|expressed sequence AU040320	NM_133886|AU040320|100317|expressed sequence AU040320	BC028869|AU040320|100317|expressed sequence AU040320	AK163033|AU040320|100317|expressed sequence AU040320	AK170261|AU040320|100317|expressed sequence AU040320	AK043006|AU040320|100317|expressed sequence AU040320	AK007704|AU040320|100317|expressed sequence AU040320	AK031342|AU040320|100317|expressed sequence AU040320
mm9_v1_chr7_+_107855215_107855319	0.0806431	GLI1..3.p2	BC079886|Fam168a|319604|family with sequence similarity 168, member A	NM_178764|Fam168a|319604|family with sequence similarity 168, member A	AK043356|Fam168a|319604|family with sequence similarity 168, member A	AK047153|Fam168a|319604|family with sequence similarity 168, member A	AK048559|Fam168a|319604|family with sequence similarity 168, member A	AK051453|Fam168a|319604|family with sequence similarity 168, member A	AK084931|Fam168a|319604|family with sequence similarity 168, member A	AK137424|Fam168a|319604|family with sequence similarity 168, member A
mm9_v1_chr16_-_18426446_18426681	0.0805716	GLI1..3.p2	AK148311|Comt|12846|catechol-O-methyltransferase	BC010402|Comt|12846|catechol-O-methyltransferase	AF076156|Comt|12846|catechol-O-methyltransferase
mm9_v1_chr1_+_101669228_101669341	0.0804781	GLI1..3.p2	NM_172851|Cntnap5b|241175|contactin associated protein-like 5B
mm9_v1_chrX_+_149672587_149672587	0.0803651	GLI1..3.p2	AK044185|Klf8|245671|Kruppel-like factor 8	NM_173780|Klf8|245671|Kruppel-like factor 8
mm9_v1_chr11_-_120012520_120012596	0.0801898	GLI1..3.p2	AK007977|Slc38a10|72055|solute carrier family 38, member 10	AK084120|Slc38a10|72055|solute carrier family 38, member 10	AK032245|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr12_-_113912266_113912513	0.0800262	GLI1..3.p2	AK154936|Akt1|11651|thymoma viral proto-oncogene 1	AK040758|Akt1|11651|thymoma viral proto-oncogene 1	X65687|Akt1|11651|thymoma viral proto-oncogene 1	BC066018|Akt1|11651|thymoma viral proto-oncogene 1	NM_001165894|Akt1|11651|thymoma viral proto-oncogene 1	NM_009652|Akt1|11651|thymoma viral proto-oncogene 1
mm9_v1_chr19_+_7457020_7457026	0.0799236	GLI1..3.p2	AK018939|1700105P06Rik|654802|RIKEN cDNA 1700105P06 gene
mm9_v1_chr9_-_62994774_62994817	0.0798653	GLI1..3.p2	BC138063|Skor1|207667|SKI family transcriptional corepressor 1	AK049035|Skor1|207667|SKI family transcriptional corepressor 1	NM_172446|Skor1|207667|SKI family transcriptional corepressor 1	AK134840|Skor1|207667|SKI family transcriptional corepressor 1	AB185113|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163755|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163757|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr7_+_13466525_13466568	0.0798105	GLI1..3.p2	AK132244|Zfp128|243833|zinc finger protein 128	AK035906|Zfp128|243833|zinc finger protein 128	NM_153802|Zfp128|243833|zinc finger protein 128	AK032046|Zfp128|243833|zinc finger protein 128	BC088998|Zfp128|243833|zinc finger protein 128	BC094248|Zfp128|243833|zinc finger protein 128	AF480861|Zfp128|243833|zinc finger protein 128
mm9_v1_chr11_-_60166321_60166401	0.0798028	GLI1..3.p2	BC062947|Tom1l2|216810|target of myb1-like 2 (chicken)	BC127266|Tom1l2|216810|target of myb1-like 2 (chicken)	AK054531|Tom1l2|216810|target of myb1-like 2 (chicken)	AK036788|Tom1l2|216810|target of myb1-like 2 (chicken)	AF467887|Tom1l2|216810|target of myb1-like 2 (chicken)	AK043095|Tom1l2|216810|target of myb1-like 2 (chicken)
mm9_v1_chr2_-_80421054_80421454	0.079772	GLI1..3.p2	AK195509|Nckap1|50884|NCK-associated protein 1	AK191629|Nckap1|50884|NCK-associated protein 1	AK194160|Nckap1|50884|NCK-associated protein 1	AK198467|Nckap1|50884|NCK-associated protein 1	AK204199|Nckap1|50884|NCK-associated protein 1	AK213144|Nckap1|50884|NCK-associated protein 1	BC127067|Nckap1|50884|NCK-associated protein 1	AJ534525|Nckap1|50884|NCK-associated protein 1	NM_016965|Nckap1|50884|NCK-associated protein 1	BC060197|Nckap1|50884|NCK-associated protein 1
mm9_v1_chr1_-_64167574_64167617	0.0795325	GLI1..3.p2	AB221646|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr12_-_103807640_103807779	0.0794088	GLI1..3.p2	AK194177|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr10_-_79076744_79076769	0.0793634	GLI1..3.p2	BC089008|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_198614|C2cd4c|237397|C2 calcium-dependent domain containing 4C	AK029946|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_001168624|C2cd4c|237397|C2 calcium-dependent domain containing 4C
mm9_v1_chr16_+_59302980_59302980	0.0792576	GLI1..3.p2	BC128025|Olfr203|258479|olfactory receptor 203	NM_146486|Olfr203|258479|olfactory receptor 203
mm9_v1_chr16_-_85173944_85173969	0.0792257	GLI1..3.p2	AK159245|App|11820|amyloid beta (A4) precursor protein	BC070409|App|11820|amyloid beta (A4) precursor protein	AK133639|App|11820|amyloid beta (A4) precursor protein	AK159352|App|11820|amyloid beta (A4) precursor protein	AK030583|App|11820|amyloid beta (A4) precursor protein	AK128971|App|11820|amyloid beta (A4) precursor protein	NM_001198823|App|11820|amyloid beta (A4) precursor protein	NM_001198824|App|11820|amyloid beta (A4) precursor protein	NM_001198825|App|11820|amyloid beta (A4) precursor protein	NM_001198826|App|11820|amyloid beta (A4) precursor protein	NM_007471|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr8_-_25934840_25934840	0.0785238	GLI1..3.p2	AK161262|Adam5|11499|a disintegrin and metallopeptidase domain 5	NM_007401|Adam5|11499|a disintegrin and metallopeptidase domain 5
mm9_v1_chr8_+_116963591_116963600	0.0783679	GLI1..3.p2	AK019911|Wwox|80707|WW domain-containing oxidoreductase	BC014716|Wwox|80707|WW domain-containing oxidoreductase	AK078528|Wwox|80707|WW domain-containing oxidoreductase	AF187014|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr8_+_79426245_79426406	0.0780772	GLI1..3.p2	BC133713|Nr3c2|110784|nuclear receptor subfamily 3, group C, member 2	NM_001083906|Nr3c2|110784|nuclear receptor subfamily 3, group C, member 2
mm9_v1_chr17_+_53618542_53618596	0.0776455	GLI1..3.p2	AK081999|Rab5a|271457|RAB5A, member RAS oncogene family	NM_025887|Rab5a|271457|RAB5A, member RAS oncogene family	AK076093|Rab5a|271457|RAB5A, member RAS oncogene family	BC096481|Rab5a|271457|RAB5A, member RAS oncogene family
mm9_v1_chr8_+_119467267_119467410	0.0775676	GLI1..3.p2	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr3_+_57540000_57540004	0.0775494	GLI1..3.p2	AK036591|Rnf13|24017|ring finger protein 13
mm9_v1_chr15_+_80782753_80782915	0.0773655	GLI1..3.p2	AK201011|Adsl|11564|adenylosuccinate lyase
mm9_v1_chr8_+_3515373_3515441	0.0771704	GLI1..3.p2	AF173829|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_001122818|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_015801|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK040720|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC054789|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC056999|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr14_+_32481114_32481230	0.0771237	GLI1..3.p2	AK189055|Btd|26363|biotinidase
mm9_v1_chr5_-_90312358_90312358	0.0769974	GLI1..3.p2	AK031900|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_001081401|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_177872|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm9_v1_chr3_+_35652981_35653067	0.0769113	GLI1..3.p2	AK154156|Atp11b|76295|ATPase, class VI, type 11B	AK155372|Atp11b|76295|ATPase, class VI, type 11B	NM_029570|Atp11b|76295|ATPase, class VI, type 11B	AK129248|Atp11b|76295|ATPase, class VI, type 11B
mm9_v1_chr5_-_22939564_22939736	0.0766763	GLI1..3.p2	AK139013|5031425E22Rik|269630|RIKEN cDNA 5031425E22 gene
mm9_v1_chr11_-_84684177_84684284	0.0766249	GLI1..3.p2	AB064543|Ggnbp2|217039|gametogenetin binding protein 2	AY633741|Ggnbp2|217039|gametogenetin binding protein 2	NM_153144|Ggnbp2|217039|gametogenetin binding protein 2	AK162027|Ggnbp2|217039|gametogenetin binding protein 2
mm9_v1_chr3_+_96050607_96050778	0.0766154	GLI1..3.p2	BC094041|Hist2h3c1|15077|histone cluster 2, H3c1	NM_178216|Hist2h3c1|15077|histone cluster 2, H3c1	BC132488|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene	BC132490|Hist2h3c2-ps|97114|histone cluster 2, H3c2, pseudogene
mm9_v1_chr2_+_28980511_28980658	0.0758194	GLI1..3.p2	AK044730|Setx|269254|senataxin	NM_198033|Setx|269254|senataxin
mm9_v1_chr17_+_79234855_79234969	0.0757285	GLI1..3.p2	AK148331|Ccdc75|53951|coiled-coil domain containing 75	NM_181649|Ccdc75|53951|coiled-coil domain containing 75	BC092522|Ccdc75|53951|coiled-coil domain containing 75	AK049867|Ccdc75|53951|coiled-coil domain containing 75	BC047998|Ccdc75|53951|coiled-coil domain containing 75	BC138310|Ccdc75|53951|coiled-coil domain containing 75	AK009084|Ccdc75|53951|coiled-coil domain containing 75
mm9_v1_chr19_-_12576485_12576634	0.0755244	GLI1..3.p2	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr9_+_79914685_79914721	0.0754796	GLI1..3.p2	AK053904|Senp6|215351|SUMO/sentrin specific peptidase 6	NM_146003|Senp6|215351|SUMO/sentrin specific peptidase 6
mm9_v1_chr7_-_4990023_4990047	0.0751441	GLI1..3.p2	BC147237|Zfp784|654801|zinc finger protein 784	BC147238|Zfp784|654801|zinc finger protein 784	AK050452|Zfp784|654801|zinc finger protein 784	AK161791|Zfp784|654801|zinc finger protein 784	NM_001039532|Zfp784|654801|zinc finger protein 784
mm9_v1_chr11_-_54769601_54769632	0.0750876	GLI1..3.p2	AK135338|Tnip1|57783|TNFAIP3 interacting protein 1
mm9_v1_chr2_+_130250035_130250123	0.0750681	GLI1..3.p2	NM_030559|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK169694|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK162984|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK049872|Vps16|80743|vacuolar protein sorting 16 (yeast)	AB056721|Vps16|80743|vacuolar protein sorting 16 (yeast)
mm9_v1_chr14_-_65671577_65671651	0.0749927	GLI1..3.p2	BC038525|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr1_-_94998418_94998474	0.0743733	GLI1..3.p2	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr2_-_27102703_27102843	0.074363	GLI1..3.p2	AK159236|Sardh|192166|sarcosine dehydrogenase	AK159681|Sardh|192166|sarcosine dehydrogenase	AK159704|Sardh|192166|sarcosine dehydrogenase
mm9_v1_chr11_+_110927475_110927548	0.0742878	GLI1..3.p2	AK044915|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	NM_008425|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2	X73052|Kcnj2|16518|potassium inwardly-rectifying channel, subfamily J, member 2
mm9_v1_chr15_+_90054711_90054794	0.0741995	GLI1..3.p2	AK143038|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK166344|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK147821|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	NM_001033441|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK170450|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK153580|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)	AK171179|Alg10b|380959|asparagine-linked glycosylation 10 homolog B (yeast, alpha-1,2-glucosyltransferase)
mm9_v1_chr11_-_102680999_102681013	0.0741504	GLI1..3.p2	BC071230|Gjc1|14615|gap junction protein, gamma 1	NM_001159383|Gjc1|14615|gap junction protein, gamma 1	AY390396|Gjc1|14615|gap junction protein, gamma 1
mm9_v1_chr2_-_44965866_44965983	0.0741261	GLI1..3.p2	AK122312|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535781|Zeb2|24136|zinc finger E-box binding homeobox 2	AJ535783|Zeb2|24136|zinc finger E-box binding homeobox 2
mm9_v1_chr12_+_30687597_30687686	0.074112	GLI1..3.p2	BC037709|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr1_+_129999868_129999934	0.073966	GLI1..3.p2	AK144098|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	NM_181750|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	AK141150|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	BC049181|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)	AK051765|R3hdm1|226412|R3H domain 1 (binds single-stranded nucleic acids)
mm9_v1_chr11_+_49477111_49477127	0.0739636	GLI1..3.p2	AF313456|Scgb3a1|68662|secretoglobin, family 3A, member 1	AF313457|Scgb3a1|68662|secretoglobin, family 3A, member 1	NM_054037|Scgb3a1|68662|secretoglobin, family 3A, member 1	NM_170727|Scgb3a1|68662|secretoglobin, family 3A, member 1	AK003988|Scgb3a1|68662|secretoglobin, family 3A, member 1	BC086910|Scgb3a1|68662|secretoglobin, family 3A, member 1	AF436840|Scgb3a1|68662|secretoglobin, family 3A, member 1
mm9_v1_chr3_-_158225075_158225097	0.0737381	GLI1..3.p2	BC138450|Lrrc7|242274|leucine rich repeat containing 7
mm9_v1_chr15_+_25914202_25914226	0.0737193	GLI1..3.p2	BC006964|Zfp622|52521|zinc finger protein 622
mm9_v1_chr19_+_6052480_6052615	0.0736617	GLI1..3.p2	AK190544|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin
mm9_v1_chr11_-_80966253_80966404	0.0733214	GLI1..3.p2	BC138530|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC138529|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	BC038551|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	NM_007384|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)	Y14634|Accn1|11418|amiloride-sensitive cation channel 1, neuronal (degenerin)
mm9_v1_chr2_-_168567244_168567299	0.0729773	GLI1..3.p2	BC094551|Atp9a|11981|ATPase, class II, type 9A	BC021814|Atp9a|11981|ATPase, class II, type 9A	NM_015731|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr7_-_112548498_112548560	0.0729224	GLI1..3.p2	BC018464|Fam160a2|74349|family with sequence similarity 160, member A2	AK154173|Fam160a2|74349|family with sequence similarity 160, member A2	AK155273|Fam160a2|74349|family with sequence similarity 160, member A2	AK085350|Fam160a2|74349|family with sequence similarity 160, member A2	AK159716|Fam160a2|74349|family with sequence similarity 160, member A2	BC063093|Fam160a2|74349|family with sequence similarity 160, member A2	NM_199009|Fam160a2|74349|family with sequence similarity 160, member A2	AK169996|Fam160a2|74349|family with sequence similarity 160, member A2
mm9_v1_chr6_-_73171624_73171667	0.0727055	GLI1..3.p2	AK042554|Dnahc6|330355|dynein, axonemal, heavy chain 6	NM_001164669|Dnahc6|330355|dynein, axonemal, heavy chain 6
mm9_v1_chr9_+_110148568_110148708	0.0726981	GLI1..3.p2	AF461091|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr18_-_10610261_10610307	0.0726886	GLI1..3.p2	BC151069|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC151077|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC172153|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr15_-_76701806_76701851	0.0723204	GLI1..3.p2	AK153967|Zfp251|71591|zinc finger protein 251	AK047148|Zfp251|71591|zinc finger protein 251	AK140082|Zfp251|71591|zinc finger protein 251
mm9_v1_chr7_+_97278722_97279067	0.0721477	GLI1..3.p2	AK170373|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC025566|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	NM_146194|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC057683|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC021491|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK144960|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC023843|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK220291|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	BC011470|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AK162360|Picalm|233489|phosphatidylinositol binding clathrin assembly protein	AY206701|Picalm|233489|phosphatidylinositol binding clathrin assembly protein
mm9_v1_chr10_-_80962400_80962451	0.0719891	GLI1..3.p2	AK075854|S1pr4|13611|sphingosine-1-phosphate receptor 4	AK154242|S1pr4|13611|sphingosine-1-phosphate receptor 4	BC107000|S1pr4|13611|sphingosine-1-phosphate receptor 4
mm9_v1_chr12_+_45370113_45370142	0.0719821	GLI1..3.p2	NM_026164|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr11_-_100576628_100576692	0.0718182	GLI1..3.p2	
mm9_v1_chr9_+_46081146_46081375	0.0717471	GLI1..3.p2	NM_011752|Zfp259|22687|zinc finger protein 259	AK158995|Zfp259|22687|zinc finger protein 259	AK170372|Zfp259|22687|zinc finger protein 259	AK044472|Zfp259|22687|zinc finger protein 259	AB041612|Zfp259|22687|zinc finger protein 259	BC021397|Zfp259|22687|zinc finger protein 259	AK167849|Zfp259|22687|zinc finger protein 259	AK168061|Zfp259|22687|zinc finger protein 259	AK215085|Zfp259|22687|zinc finger protein 259
mm9_v1_chr10_+_40069255_40069363	0.0716935	GLI1..3.p2	AK052818|Cdk19|78334|cyclin-dependent kinase 19	AK147340|Cdk19|78334|cyclin-dependent kinase 19	BC062100|Cdk19|78334|cyclin-dependent kinase 19	BC048908|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr4_-_41454658_41454796	0.0716671	GLI1..3.p2	DQ873295|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	DQ873296|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	AK003742|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	BC049629|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene	NM_028624|1110017D15Rik|73721|RIKEN cDNA 1110017D15 gene
mm9_v1_chr1_-_168339909_168339980	0.0713025	GLI1..3.p2	AK031716|Pogk|71592|pogo transposable element with KRAB domain	BC072587|Pogk|71592|pogo transposable element with KRAB domain	AK048067|Pogk|71592|pogo transposable element with KRAB domain	AK048752|Pogk|71592|pogo transposable element with KRAB domain	AK053898|Pogk|71592|pogo transposable element with KRAB domain	NM_001142948|Pogk|71592|pogo transposable element with KRAB domain	NM_175170|Pogk|71592|pogo transposable element with KRAB domain
mm9_v1_chr7_-_31230463_31230562	0.0712044	GLI1..3.p2	BC106158|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK170818|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK160871|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK154992|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr19_-_13890077_13890147	0.071165	GLI1..3.p2	NM_146796|Olfr1499|258792|olfactory receptor 1499	BC132138|Olfr1499|258792|olfactory receptor 1499
mm9_v1_chr15_+_89259892_89260019	0.0709549	GLI1..3.p2	AK083297|C730034F03Rik|319362|RIKEN cDNA C730034F03 gene	AK053866|C730034F03Rik|319362|RIKEN cDNA C730034F03 gene
mm9_v1_chr7_+_52242287_52242317	0.0709482	GLI1..3.p2	
mm9_v1_chr2_+_37307751_37307773	0.0706846	GLI1..3.p2	AK044346|Rabgap1|227800|RAB GTPase activating protein 1	NM_001033960|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr1_-_54251877_54252011	0.0704767	GLI1..3.p2	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr3_+_88357635_88357640	0.070168	GLI1..3.p2	AB040050|Ubqln4|94232|ubiquilin 4	NM_033526|Ubqln4|94232|ubiquilin 4
mm9_v1_chr5_-_21371421_21371421	0.0699171	GLI1..3.p2	AF529192|Slc26a5|80979|solute carrier family 26, member 5	NM_030727|Slc26a5|80979|solute carrier family 26, member 5
mm9_v1_chr10_-_39745065_39745113	0.0698296	GLI1..3.p2	AK089961|AI317395|215929|expressed sequence AI317395	NM_144821|AI317395|215929|expressed sequence AI317395
mm9_v1_chr2_+_119698245_119698286	0.0697278	GLI1..3.p2	AK133775|Mga|29808|MAX gene associated
mm9_v1_chr8_-_87502592_87502646	0.0693725	GLI1..3.p2	X54332|Junb|16477|Jun-B oncogene	BC092302|Junb|16477|Jun-B oncogene	BC003790|Junb|16477|Jun-B oncogene	AK155043|Junb|16477|Jun-B oncogene	AK150286|Junb|16477|Jun-B oncogene	AK156596|Junb|16477|Jun-B oncogene	AK159140|Junb|16477|Jun-B oncogene	AK159661|Junb|16477|Jun-B oncogene	AK088643|Junb|16477|Jun-B oncogene	AK141592|Junb|16477|Jun-B oncogene	AK144871|Junb|16477|Jun-B oncogene	AK145550|Junb|16477|Jun-B oncogene	AK149794|Junb|16477|Jun-B oncogene	AK150111|Junb|16477|Jun-B oncogene	AK150247|Junb|16477|Jun-B oncogene	AK159083|Junb|16477|Jun-B oncogene	AK159520|Junb|16477|Jun-B oncogene	AK160066|Junb|16477|Jun-B oncogene	NM_008416|Junb|16477|Jun-B oncogene	J03236|Junb|16477|Jun-B oncogene
mm9_v1_chr10_-_88875526_88875657	0.0693551	GLI1..3.p2	AK171905|Gas2l3|237436|growth arrest-specific 2 like 3	AK136819|Gas2l3|237436|growth arrest-specific 2 like 3
mm9_v1_chrX_+_20937988_20937991	0.0692331	GLI1..3.p2	AK032684|Gm5124|331392|predicted pseudogene 5124	NM_198633|Gm5124|331392|predicted pseudogene 5124
mm9_v1_chr17_-_27640248_27640248	0.0692321	GLI1..3.p2	BC080284|Grm4|268934|glutamate receptor, metabotropic 4	NM_001013385|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr15_-_98781060_98781163	0.0691834	GLI1..3.p2	M28729|Tuba1a|22142|tubulin, alpha 1A	AK201449|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr8_-_124102548_124102765	0.0687457	GLI1..3.p2	AB041586|Fbxo31|76454|F-box protein 31	AK163641|Fbxo31|76454|F-box protein 31	BC026929|Fbxo31|76454|F-box protein 31	AK140412|Fbxo31|76454|F-box protein 31	NM_133765|Fbxo31|76454|F-box protein 31
mm9_v1_chr3_-_100914081_100914100	0.0684327	GLI1..3.p2	AF152344|Ptgfrn|19221|prostaglandin F2 receptor negative regulator	NM_011197|Ptgfrn|19221|prostaglandin F2 receptor negative regulator	BC145713|Ptgfrn|19221|prostaglandin F2 receptor negative regulator	BC145715|Ptgfrn|19221|prostaglandin F2 receptor negative regulator
mm9_v1_chr7_+_139897549_139897592	0.0682268	GLI1..3.p2	
mm9_v1_chr18_-_81183260_81183316	0.0681694	GLI1..3.p2	BC072631|Sall3|20689|sal-like 3 (Drosophila)	NM_178280|Sall3|20689|sal-like 3 (Drosophila)
mm9_v1_chr18_-_77286034_77286037	0.0681525	GLI1..3.p2	AK017114|Katnal2|71206|katanin p60 subunit A-like 2	NM_027721|Katnal2|71206|katanin p60 subunit A-like 2	AK083612|Katnal2|71206|katanin p60 subunit A-like 2
mm9_v1_chr3_-_129763586_129763646	0.0679099	GLI1..3.p2	BC046556|Sec24b|99683|Sec24 related gene family, member B (S. cerevisiae)
mm9_v1_chr12_+_21117592_21117662	0.067896	GLI1..3.p2	AK147622|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC080847|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001004364|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001098168|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	NM_001135192|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr10_-_126626878_126627109	0.0677146	GLI1..3.p2	AK158684|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_001166413|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AF487515|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AK010452|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	BC041113|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_028027|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25
mm9_v1_chr11_-_69571681_69571794	0.0677129	GLI1..3.p2	BC114996|Polr2a|20020|polymerase (RNA) II (DNA directed) polypeptide A	NM_009089|Polr2a|20020|polymerase (RNA) II (DNA directed) polypeptide A	U37500|Polr2a|20020|polymerase (RNA) II (DNA directed) polypeptide A
mm9_v1_chr2_+_25258653_25258768	0.0675583	GLI1..3.p2	AK146466|Npdc1|18146|neural proliferation, differentiation and control gene 1	L03814|Npdc1|18146|neural proliferation, differentiation and control gene 1	X67209|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr9_+_56785271_56785306	0.0674624	GLI1..3.p2	AK004456|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	BC009145|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)	NM_133976|Imp3|102462|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm9_v1_chr1_-_37921891_37921923	0.0673064	GLI1..3.p2	AK164954|Tsga10|211484|testis specific 10	AK163138|Tsga10|211484|testis specific 10	BC066782|Tsga10|211484|testis specific 10	NM_207228|Tsga10|211484|testis specific 10
mm9_v1_chr10_+_77512586_77512759	0.0672472	GLI1..3.p2	AK010434|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	NM_019448|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	BC083147|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	AJ404467|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like	AF220524|Dnmt3l|54427|DNA (cytosine-5-)-methyltransferase 3-like
mm9_v1_chr11_+_20548192_20548490	0.0670709	GLI1..3.p2	AF366403|Sertad2|58172|SERTA domain containing 2	AK129059|Sertad2|58172|SERTA domain containing 2	BC008257|Sertad2|58172|SERTA domain containing 2	AK195500|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr7_+_116895582_116895839	0.0670059	GLI1..3.p2	AK015280|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene	AK031634|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene	AK050574|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene
mm9_v1_chr11_+_103510847_103510859	0.0668912	GLI1..3.p2	BC147064|Rprml|104582|reprimo-like	BC147065|Rprml|104582|reprimo-like
mm9_v1_chr10_-_128356215_128356352	0.0668161	GLI1..3.p2	AF013288|Rdh5|19682|retinol dehydrogenase 5	BC021372|Rdh5|19682|retinol dehydrogenase 5	AF033196|Rdh5|19682|retinol dehydrogenase 5	AK033063|Rdh5|19682|retinol dehydrogenase 5	AK135139|Rdh5|19682|retinol dehydrogenase 5	NM_134006|Rdh5|19682|retinol dehydrogenase 5
mm9_v1_chr13_+_46597448_46597458	0.0666234	GLI1..3.p2	BC057937|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr11_-_69793719_69793789	0.0663745	GLI1..3.p2	AK011130|Rai12|54351|retinoic acid induced 12
mm9_v1_chr9_+_72122785_72122816	0.0660071	GLI1..3.p2	AK169721|Zfp280d|235469|zinc finger protein 280D	BC079878|Zfp280d|235469|zinc finger protein 280D	AK045173|Zfp280d|235469|zinc finger protein 280D	AK146597|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr11_-_95926384_95926408	0.0659712	GLI1..3.p2	AK152529|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK153328|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr5_+_108797254_108797392	0.0658108	GLI1..3.p2	AK165889|Gm10419|100038441|predicted gene 10419
mm9_v1_chr2_+_180460024_180460083	0.065616	GLI1..3.p2	NM_183161|Slc17a9|228993|solute carrier family 17, member 9	BC019537|Slc17a9|228993|solute carrier family 17, member 9
mm9_v1_chr1_-_94998392_94998412	0.0655058	GLI1..3.p2	AK138237|Kif1a|16560|kinesin family member 1A	BC034863|Kif1a|16560|kinesin family member 1A	D29951|Kif1a|16560|kinesin family member 1A	AK147640|Kif1a|16560|kinesin family member 1A
mm9_v1_chr7_+_117161896_117161938	0.065373	GLI1..3.p2	AY316153|Ipo7|233726|importin 7	NM_181517|Ipo7|233726|importin 7
mm9_v1_chr7_+_29940669_29940698	0.0652434	GLI1..3.p2	AK004111|1110035H17Rik|68686|RIKEN cDNA 1110035H17 gene
mm9_v1_chr16_+_18426466_18426526	0.0650702	GLI1..3.p2	AB027566|Txnrd2|26462|thioredoxin reductase 2	AF136399|Txnrd2|26462|thioredoxin reductase 2	AF412308|Txnrd2|26462|thioredoxin reductase 2	NM_013711|Txnrd2|26462|thioredoxin reductase 2
mm9_v1_chr3_+_89580481_89580505	0.0650275	GLI1..3.p2	BC060966|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr18_-_64648748_64648758	0.0649997	GLI1..3.p2	AK159652|Fech|14151|ferrochelatase
mm9_v1_chr4_+_126803305_126803317	0.06488	GLI1..3.p2	AK156456|Gm12942|100039968|predicted gene 12942
mm9_v1_chr4_+_125773896_125773946	0.0648421	GLI1..3.p2	NM_001163266|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	NM_138721|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10
mm9_v1_chr11_+_77328596_77328700	0.0647317	GLI1..3.p2	AK046590|Abhd15|67477|abhydrolase domain containing 15	NM_026185|Abhd15|67477|abhydrolase domain containing 15	AK004929|Abhd15|67477|abhydrolase domain containing 15	AK153809|Abhd15|67477|abhydrolase domain containing 15	FJ154119|Abhd15|67477|abhydrolase domain containing 15
mm9_v1_chr17_+_70318760_70318776	0.0645301	GLI1..3.p2	AK033901|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr13_+_59686602_59686637	0.0641259	GLI1..3.p2	AK021042|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm9_v1_chr12_+_33063902_33064058	0.0641062	GLI1..3.p2	AK171109|2010109K11Rik|72123|RIKEN cDNA 2010109K11 gene
mm9_v1_chr19_+_59335367_59335452	0.0639187	GLI1..3.p2	NM_172523|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK035644|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK033871|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK041274|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK034368|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	BC078449|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2
mm9_v1_chr14_+_68334187_68334420	0.0638792	GLI1..3.p2	AK087312|Kctd9|105440|potassium channel tetramerisation domain containing 9	AK166501|Kctd9|105440|potassium channel tetramerisation domain containing 9	BC011302|Kctd9|105440|potassium channel tetramerisation domain containing 9
mm9_v1_chr18_-_36838775_36838784	0.0637976	GLI1..3.p2	BC024136|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr7_+_13063644_13063667	0.0637809	GLI1..3.p2	AK032301|Zfp606|67370|zinc finger protein 606	AK139269|Zfp606|67370|zinc finger protein 606	NM_001039951|Zfp606|67370|zinc finger protein 606	NM_026112|Zfp606|67370|zinc finger protein 606	AK010575|Zfp606|67370|zinc finger protein 606
mm9_v1_chr9_-_31720846_31720869	0.0636889	GLI1..3.p2	BC012684|Barx2|12023|BarH-like homeobox 2	NM_013800|Barx2|12023|BarH-like homeobox 2
mm9_v1_chr6_+_87864193_87864299	0.0636538	GLI1..3.p2	AK018400|8430410A17Rik|232210|RIKEN cDNA 8430410A17 gene
mm9_v1_chr16_+_92058498_92058582	0.0635615	GLI1..3.p2	AK165590|Mrps6|121022|mitochondrial ribosomal protein S6	AB049943|Mrps6|121022|mitochondrial ribosomal protein S6	AY061856|Mrps6|121022|mitochondrial ribosomal protein S6	AK144718|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK166374|Mrps6|121022|mitochondrial ribosomal protein S6	AK167304|Mrps6|121022|mitochondrial ribosomal protein S6	NM_017391|Slc5a3|53881|solute carrier family 5 (inositol transporters), member 3	AK167316|Mrps6|121022|mitochondrial ribosomal protein S6	BC027271|Mrps6|121022|mitochondrial ribosomal protein S6	NM_080456|Mrps6|121022|mitochondrial ribosomal protein S6
mm9_v1_chr2_+_4897204_4897264	0.0632896	GLI1..3.p2	AK003750|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217397|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217398|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217399|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217400|Ucma|68527|upper zone of growth plate and cartilage matrix associated	BC115608|Ucma|68527|upper zone of growth plate and cartilage matrix associated	BC115609|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr11_-_116515232_116515303	0.0631715	GLI1..3.p2	AJ315163|Cygb|114886|cytoglobin
mm9_v1_chr14_-_19726121_19726326	0.0631391	GLI1..3.p2	BC016265|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)	NM_144839|Ube2e2|218793|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)
mm9_v1_chr15_+_80085923_80086003	0.062918	GLI1..3.p2	AK146193|Atf4|11911|activating transcription factor 4	AK144777|Atf4|11911|activating transcription factor 4	AK155254|Atf4|11911|activating transcription factor 4	AK138657|Atf4|11911|activating transcription factor 4	AK150231|Atf4|11911|activating transcription factor 4	X61507|Atf4|11911|activating transcription factor 4	AK156298|Atf4|11911|activating transcription factor 4	M94087|Atf4|11911|activating transcription factor 4	BC031542|Atf4|11911|activating transcription factor 4	AK157839|Atf4|11911|activating transcription factor 4	AK195416|Atf4|11911|activating transcription factor 4
mm9_v1_chr5_+_108796754_108796809	0.0626979	GLI1..3.p2	AK031816|Gm10419|100038441|predicted gene 10419
mm9_v1_chr6_+_120314442_120314515	0.0625025	GLI1..3.p2	BC080691|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK133589|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK154025|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC010717|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr11_-_60967744_60967833	0.0622794	GLI1..3.p2	AK204675|Usp22|216825|ubiquitin specific peptidase 22
mm9_v1_chr4_-_153534748_153534817	0.0621707	GLI1..3.p2	BC019544|Tprgl|67808|transformation related protein 63 regulated like	AK004777|Tprgl|67808|transformation related protein 63 regulated like	AK155413|Tprgl|67808|transformation related protein 63 regulated like	NM_026388|Tprgl|67808|transformation related protein 63 regulated like
mm9_v1_chr5_-_123411478_123411530	0.0621103	GLI1..3.p2	
mm9_v1_chr11_+_53164384_53164450	0.0619774	GLI1..3.p2	AK044058|Aff4|93736|AF4/FMR2 family, member 4	AK054401|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr15_-_39775173_39775370	0.0619751	GLI1..3.p2	AK050512|Lrp12|239393|low density lipoprotein-related protein 12	NM_172814|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr6_-_125115316_125115426	0.0619454	GLI1..3.p2	BC096042|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr11_-_45758413_45758456	0.0619024	GLI1..3.p2	AF514309|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	BC094286|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK143661|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK082292|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	NM_028185|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11
mm9_v1_chr18_+_65590615_65590687	0.0617837	GLI1..3.p2	AK164626|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK041919|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK085071|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	NM_172833|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK045200|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110487|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110488|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1
mm9_v1_chr16_-_4879787_4879850	0.0617018	GLI1..3.p2	BC013706|Fam100a|207740|family with sequence similarity 100, member A	BC064081|Fam100a|207740|family with sequence similarity 100, member A	BC056472|Fam100a|207740|family with sequence similarity 100, member A	AK005316|Fam100a|207740|family with sequence similarity 100, member A	NM_145359|Fam100a|207740|family with sequence similarity 100, member A
mm9_v1_chr5_-_21151348_21151451	0.0615984	GLI1..3.p2	BC145291|Fbxl13|320118|F-box and leucine-rich repeat protein 13	BC145292|Fbxl13|320118|F-box and leucine-rich repeat protein 13	AK030172|Fbxl13|320118|F-box and leucine-rich repeat protein 13	AK029566|Fbxl13|320118|F-box and leucine-rich repeat protein 13	NM_177076|Fbxl13|320118|F-box and leucine-rich repeat protein 13
mm9_v1_chr11_-_77979070_77979090	0.0614976	GLI1..3.p2	AK046015|Traf4|22032|TNF receptor associated factor 4
mm9_v1_chr16_-_96413824_96413863	0.0611738	GLI1..3.p2	AK031481|Lca5l|385668|Leber congenital amaurosis 5-like	AK029554|Lca5l|385668|Leber congenital amaurosis 5-like	AK133316|Lca5l|385668|Leber congenital amaurosis 5-like	NM_001001492|Lca5l|385668|Leber congenital amaurosis 5-like
mm9_v1_chr19_-_3897557_3897679	0.0611325	GLI1..3.p2	
mm9_v1_chr18_-_35374663_35374683	0.0610234	GLI1..3.p2	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr8_+_121970660_121970680	0.0609969	GLI1..3.p2	BC107384|Necab2|117148|N-terminal EF-hand calcium binding protein 2	BC107385|Necab2|117148|N-terminal EF-hand calcium binding protein 2	BC115857|Necab2|117148|N-terminal EF-hand calcium binding protein 2	BC115963|Necab2|117148|N-terminal EF-hand calcium binding protein 2
mm9_v1_chr15_-_99288178_99288178	0.0609903	GLI1..3.p2	BC072572|Nckap5l|380969|NCK-associated protein 5-like	NM_001001884|Nckap5l|380969|NCK-associated protein 5-like
mm9_v1_chr9_-_44226119_44226149	0.0606711	GLI1..3.p2	AK162606|Ccdc84|382073|coiled-coil domain containing 84
mm9_v1_chr12_-_85791928_85791966	0.0601019	GLI1..3.p2	AK128924|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK169915|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK171896|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK155814|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK170305|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK082790|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK147146|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1	AK171581|Aldh6a1|104776|aldehyde dehydrogenase family 6, subfamily A1
mm9_v1_chr4_-_132849266_132849290	0.0600317	GLI1..3.p2	AK195571|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr11_+_59476181_59476356	0.0599696	GLI1..3.p2	AK155630|Mprip|26936|myosin phosphatase Rho interacting protein	AK044512|Mprip|26936|myosin phosphatase Rho interacting protein	BC049803|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr1_-_64125352_64125397	0.059936	GLI1..3.p2	AK086122|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK036514|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr4_+_15885171_15885371	0.0597426	GLI1..3.p2	AB016988|Nbn|27354|nibrin
mm9_v1_chr3_-_97031272_97031292	0.0596426	GLI1..3.p2	AK147659|Bcl9|77578|B-cell CLL/lymphoma 9
mm9_v1_chr6_-_8728094_8728149	0.0592691	GLI1..3.p2	BC002030|Ica1|15893|islet cell autoantigen 1	AK192988|Ica1|15893|islet cell autoantigen 1	U26459|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr16_+_5884885_5884885	0.0590702	GLI1..3.p2	BC053009|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_021477|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr12_-_92828896_92828926	0.0584871	GLI1..3.p2	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chr2_+_32483909_32483988	0.0583271	GLI1..3.p2	NM_001198792|Ak1|11636|adenylate kinase 1	AJ010108|Ak1|11636|adenylate kinase 1
mm9_v1_chr5_+_115018259_115018259	0.0582887	GLI1..3.p2	BC057022|BC057022|433940|cDNA sequence BC057022	NM_001004180|BC057022|433940|cDNA sequence BC057022
mm9_v1_chr9_+_14589080_14589119	0.0579386	GLI1..3.p2	U58987|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	U60318|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168208|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146234|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK146370|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)	AK168180|Mre11a|17535|meiotic recombination 11 homolog A (S. cerevisiae)
mm9_v1_chr13_+_100184848_100184979	0.0579368	GLI1..3.p2	
mm9_v1_chr2_+_14525932_14526000	0.0579363	GLI1..3.p2	AK034054|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	NM_023116|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	FM872408|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109156|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109157|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit
mm9_v1_chr13_+_58503955_58503963	0.0576419	GLI1..3.p2	NM_001168248|Rmi1|74386|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)	NM_028904|Rmi1|74386|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)	AK016542|Rmi1|74386|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)
mm9_v1_chr3_+_89263039_89263081	0.057587	GLI1..3.p2	NM_026784|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chr8_+_28153059_28153137	0.0574675	GLI1..3.p2	AK049905|Prosc|114863|proline synthetase co-transcribed	BC047992|Prosc|114863|proline synthetase co-transcribed	AK160172|Prosc|114863|proline synthetase co-transcribed	AK032308|Prosc|114863|proline synthetase co-transcribed	AK134549|Prosc|114863|proline synthetase co-transcribed	AK191605|Prosc|114863|proline synthetase co-transcribed	AK203439|Prosc|114863|proline synthetase co-transcribed
mm9_v1_chr14_-_78707695_78707851	0.0574277	GLI1..3.p2	AB008426|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AB032771|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AB032772|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AB036798|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	BC125603|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	BC131970|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AF019048|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AF013170|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AK159997|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	AK159498|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11	NM_011613|Tnfsf11|21943|tumor necrosis factor (ligand) superfamily, member 11
mm9_v1_chr19_-_42826956_42827093	0.0572661	GLI1..3.p2	AK154222|Pyroxd2|74580|pyridine nucleotide-disulphide oxidoreductase domain 2	AK160239|Pyroxd2|74580|pyridine nucleotide-disulphide oxidoreductase domain 2	AK014668|Pyroxd2|74580|pyridine nucleotide-disulphide oxidoreductase domain 2	BC140971|Pyroxd2|74580|pyridine nucleotide-disulphide oxidoreductase domain 2	BC144951|Pyroxd2|74580|pyridine nucleotide-disulphide oxidoreductase domain 2
mm9_v1_chr11_-_84338922_84339036	0.0571941	GLI1..3.p2	Z27410|Lhx1|16869|LIM homeobox protein 1	BC092374|Lhx1|16869|LIM homeobox protein 1	NM_008498|Lhx1|16869|LIM homeobox protein 1	AK141086|Lhx1|16869|LIM homeobox protein 1
mm9_v1_chr2_+_70312979_70313222	0.0571878	GLI1..3.p2	AK036234|Sp5|64406|trans-acting transcription factor 5	NM_022435|Sp5|64406|trans-acting transcription factor 5	BC116691|Sp5|64406|trans-acting transcription factor 5	BC117505|Sp5|64406|trans-acting transcription factor 5	AF279479|Sp5|64406|trans-acting transcription factor 5
mm9_v1_chr11_+_62462155_62462185	0.0571459	GLI1..3.p2	NM_175002|Mmgt2|216829|membrane magnesium transporter 2	BC096583|Mmgt2|216829|membrane magnesium transporter 2
mm9_v1_chr13_-_43295201_43295224	0.0571141	GLI1..3.p2	AK036079|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1
mm9_v1_chr7_-_89079168_89079313	0.0570877	GLI1..3.p2	AK014849|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK044858|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK051401|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3	AK135495|Hdgfrp3|29877|hepatoma-derived growth factor, related protein 3
mm9_v1_chr11_-_78059124_78059213	0.0570271	GLI1..3.p2	BC072657|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	AK170533|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	U40375|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)	NM_009297|Supt6h|20926|suppressor of Ty 6 homolog (S. cerevisiae)
mm9_v1_chr18_-_52688607_52688694	0.0569363	GLI1..3.p2	AK135213|Lox|16948|lysyl oxidase
mm9_v1_chr10_-_79855338_79855377	0.0568268	GLI1..3.p2	
mm9_v1_chr4_+_104829951_104829954	0.0564471	GLI1..3.p2	AK011276|Ppap2b|67916|phosphatidic acid phosphatase type 2B	NM_080555|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chrX_-_70704286_70704406	0.0564443	GLI1..3.p2	AK050729|Haus7|73738|HAUS augmin-like complex, subunit 7	BC025464|Haus7|73738|HAUS augmin-like complex, subunit 7	AY029337|Haus7|73738|HAUS augmin-like complex, subunit 7	NM_028633|Haus7|73738|HAUS augmin-like complex, subunit 7	NM_207104|Haus7|73738|HAUS augmin-like complex, subunit 7
mm9_v1_chr11_+_77796714_77796777	0.0563553	GLI1..3.p2	BC043080|Phf12|268448|PHD finger protein 12
mm9_v1_chr5_+_73039082_73039097	0.0563221	GLI1..3.p2	AK014427|Nipal1|70701|NIPA-like domain containing 1	BC125447|Nipal1|70701|NIPA-like domain containing 1	BC125449|Nipal1|70701|NIPA-like domain containing 1
mm9_v1_chr18_+_36124483_36124488	0.0562674	GLI1..3.p2	BC066026|Psd2|74002|pleckstrin and Sec7 domain containing 2	NM_028707|Psd2|74002|pleckstrin and Sec7 domain containing 2
mm9_v1_chr10_+_7400978_7401034	0.0560399	GLI1..3.p2	AK038612|Lats1|16798|large tumor suppressor	NM_010690|Lats1|16798|large tumor suppressor	BC158123|Lats1|16798|large tumor suppressor
mm9_v1_chr11_-_116515361_116515394	0.0558972	GLI1..3.p2	AK172475|Cygb|114886|cytoglobin	AK163073|Cygb|114886|cytoglobin
mm9_v1_chr17_+_45701100_45701100	0.0558963	GLI1..3.p2	AK167343|Slc35b2|73836|solute carrier family 35, member B2	NM_028662|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr11_-_118280266_118280405	0.0558846	GLI1..3.p2	AK006565|Cant1|76025|calcium activated nucleotidase 1	AK166384|Cant1|76025|calcium activated nucleotidase 1	AK081118|Cant1|76025|calcium activated nucleotidase 1	AK017942|Cant1|76025|calcium activated nucleotidase 1	AK049879|Cant1|76025|calcium activated nucleotidase 1	NM_001025617|Cant1|76025|calcium activated nucleotidase 1	NM_001025618|Cant1|76025|calcium activated nucleotidase 1	NM_029502|Cant1|76025|calcium activated nucleotidase 1	AK085059|Cant1|76025|calcium activated nucleotidase 1
mm9_v1_chr11_+_22890575_22890628	0.0556247	GLI1..3.p2	NM_009837|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	Z31554|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK146242|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK010634|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK152665|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK165229|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK167026|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)
mm9_v1_chr3_-_154756325_154756369	0.0554892	GLI1..3.p2	AJ276067|Fpgt|75540|fucose-1-phosphate guanylyltransferase	AK028640|Fpgt|75540|fucose-1-phosphate guanylyltransferase	BC110552|Fpgt|75540|fucose-1-phosphate guanylyltransferase	AK045369|Fpgt|75540|fucose-1-phosphate guanylyltransferase	BC110551|Fpgt|75540|fucose-1-phosphate guanylyltransferase	NM_029330|Fpgt|75540|fucose-1-phosphate guanylyltransferase
mm9_v1_chr7_+_28232980_28232996	0.0552433	GLI1..3.p2	BC027279|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))	NM_144923|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))
mm9_v1_chr15_+_74346835_74346839	0.0552091	GLI1..3.p2	AK147494|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr3_+_136333251_136333262	0.0550833	GLI1..3.p2	AK166287|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr11_-_119959959_119959998	0.0545223	GLI1..3.p2	BC094318|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC049110|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC064313|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene
mm9_v1_chr17_+_35479186_35479277	0.0543436	GLI1..3.p2	BC138688|H2-Q2|15013|histocompatibility 2, Q region locus 2	BC138689|H2-Q2|15013|histocompatibility 2, Q region locus 2	AY989880|H2-Q2|15013|histocompatibility 2, Q region locus 2	NM_010392|H2-Q2|15013|histocompatibility 2, Q region locus 2
mm9_v1_chr2_+_24132788_24133018	0.0542256	GLI1..3.p2	AK008977|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK009741|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK076547|Il1f5|54450|interleukin 1 family, member 5 (delta)	NM_019451|Il1f5|54450|interleukin 1 family, member 5 (delta)	AK010020|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF200495|Il1f5|54450|interleukin 1 family, member 5 (delta)	AJ250429|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132600|Il1f5|54450|interleukin 1 family, member 5 (delta)	BC132602|Il1f5|54450|interleukin 1 family, member 5 (delta)	AF230378|Il1f5|54450|interleukin 1 family, member 5 (delta)
mm9_v1_chr7_-_29349236_29349293	0.0541756	GLI1..3.p2	AK017713|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4
mm9_v1_chr2_-_157854168_157854171	0.0540993	GLI1..3.p2	AK128940|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)
mm9_v1_chr4_+_59639079_59639315	0.0540381	GLI1..3.p2	AK047478|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	AK087509|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	NM_153158|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	AK047601|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	AK081604|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	NM_001015681|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	BC037070|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene	BC017649|E130308A19Rik|230259|RIKEN cDNA E130308A19 gene
mm9_v1_chr7_-_86278720_86278866	0.0540103	GLI1..3.p2	
mm9_v1_chr16_+_18776955_18776963	0.0540011	GLI1..3.p2	BC002016|Cldn5|12741|claudin 5
mm9_v1_chr9_-_103118185_103118198	0.0536095	GLI1..3.p2	M23016|Trf|22041|transferrin
mm9_v1_chr9_+_117161650_117161701	0.0534775	GLI1..3.p2	
mm9_v1_chr7_+_107376116_107376219	0.0533008	GLI1..3.p2	NM_027629|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK039189|Pgm2l1|70974|phosphoglucomutase 2-like 1	AK040513|Pgm2l1|70974|phosphoglucomutase 2-like 1	BC076571|Pgm2l1|70974|phosphoglucomutase 2-like 1
mm9_v1_chr7_+_123175492_123175501	0.0530817	GLI1..3.p2	AK003497|1110006G14Rik|68469|RIKEN cDNA 1110006G14 gene
mm9_v1_chr19_+_42245102_42245124	0.0530326	GLI1..3.p2	BC042595|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr11_+_68316520_68316601	0.0530323	GLI1..3.p2	NM_001004435|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	NM_001081566|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK169948|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK036623|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	BC028998|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK171063|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK151178|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6	AK153039|Pik3r6|104709|phosphoinositide-3-kinase, regulatory subunit 6
mm9_v1_chr6_+_29346606_29346665	0.052862	GLI1..3.p2	NM_145574|Ccdc136|232664|coiled-coil domain containing 136
mm9_v1_chr4_-_127035364_127035407	0.0527197	GLI1..3.p2	M91236|Gjb5|14622|gap junction protein, beta 5	AK082917|Gjb5|14622|gap junction protein, beta 5	NM_010291|Gjb5|14622|gap junction protein, beta 5
mm9_v1_chr6_+_72305440_72305522	0.0526913	GLI1..3.p2	NM_144916|Tmem150a|232086|transmembrane protein 150A	BC028825|Tmem150a|232086|transmembrane protein 150A
mm9_v1_chr17_+_47641999_47642189	0.0525511	GLI1..3.p2	NM_001081635|Ccnd3|12445|cyclin D3	NM_001081636|Ccnd3|12445|cyclin D3	AK161758|Ccnd3|12445|cyclin D3	AK083384|Ccnd3|12445|cyclin D3	AK020317|Ccnd3|12445|cyclin D3
mm9_v1_chr8_+_88016492_88016583	0.0525419	GLI1..3.p2	AK075894|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK076250|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK031958|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK033424|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	NM_173866|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2
mm9_v1_chr10_+_120471059_120471111	0.0525408	GLI1..3.p2	AK077698|Wif1|24117|Wnt inhibitory factor 1	AK142443|Wif1|24117|Wnt inhibitory factor 1	AK158359|Wif1|24117|Wnt inhibitory factor 1	NM_011915|Wif1|24117|Wnt inhibitory factor 1
mm9_v1_chr17_+_35272688_35272836	0.0524195	GLI1..3.p2	AK164266|Bag6|224727|BCL2-associated athanogene 6	AK170134|Bag6|224727|BCL2-associated athanogene 6
mm9_v1_chr17_-_36179615_36179686	0.052309	GLI1..3.p2	M35243|H2-T22|15039|histocompatibility 2, T region locus 22	M35247|H2-T22|15039|histocompatibility 2, T region locus 22	BC003819|H2-T22|15039|histocompatibility 2, T region locus 22	M35248|H2-T9|15051|histocompatibility 2, T region locus 9	NM_010399|H2-T9|15051|histocompatibility 2, T region locus 9	AK161744|H2-T22|15039|histocompatibility 2, T region locus 22	M35245|H2-T22|15039|histocompatibility 2, T region locus 22	NM_010397|H2-T22|15039|histocompatibility 2, T region locus 22	AK162874|H2-T22|15039|histocompatibility 2, T region locus 22	AK133985|H2-T22|15039|histocompatibility 2, T region locus 22
mm9_v1_chr6_-_35489875_35489887	0.0521783	GLI1..3.p2	NM_008098|Mtpn|14489|myotrophin
mm9_v1_chr13_+_59686693_59686787	0.0521342	GLI1..3.p2	NM_030153|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC027201|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	AY102701|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC043701|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	BC056435|Naa35|78689|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm9_v1_chr3_+_96962693_96962789	0.0520857	GLI1..3.p2	AK165356|Acp6|66659|acid phosphatase 6, lysophosphatidic	NM_019800|Acp6|66659|acid phosphatase 6, lysophosphatidic	AB030038|Acp6|66659|acid phosphatase 6, lysophosphatidic	AK077729|Acp6|66659|acid phosphatase 6, lysophosphatidic	AK160271|Acp6|66659|acid phosphatase 6, lysophosphatidic	AK002783|Acp6|66659|acid phosphatase 6, lysophosphatidic	AK171757|Acp6|66659|acid phosphatase 6, lysophosphatidic
mm9_v1_chr5_+_30890610_30890699	0.0519171	GLI1..3.p2	AB008537|Kcnk3|16527|potassium channel, subfamily K, member 3	AF006824|Kcnk3|16527|potassium channel, subfamily K, member 3	AF022821|Kcnk3|16527|potassium channel, subfamily K, member 3
mm9_v1_chr2_-_91802081_91802083	0.0518939	GLI1..3.p2	
mm9_v1_chr12_-_103943059_103943209	0.0517253	GLI1..3.p2	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr11_+_98671106_98671158	0.0516815	GLI1..3.p2	NM_138660|Casc3|192160|cancer susceptibility candidate 3	AF526276|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr15_-_102341090_102341132	0.0516752	GLI1..3.p2	AK166435|Map3k12|26404|mitogen-activated protein kinase kinase kinase 12
mm9_v1_chr13_+_73604668_73604698	0.0516619	GLI1..3.p2	AK155286|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1	AK081865|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1	AK046079|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1	AK046507|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1	AK170723|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1	AK171582|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1	AK132379|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1	AK169190|Lpcat1|210992|lysophosphatidylcholine acyltransferase 1
mm9_v1_chr2_-_30214724_30214844	0.0516514	GLI1..3.p2	AF426314|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC024477|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	NM_139302|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK155248|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152409|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152502|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	EF676083|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK167762|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC028859|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2
mm9_v1_chr5_+_24606757_24606800	0.0515416	GLI1..3.p2	BC094288|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene	AK013483|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene	AK076604|2900005J15Rik|67261|RIKEN cDNA 2900005J15 gene
mm9_v1_chr5_-_72049058_72049225	0.0514678	GLI1..3.p2	AK079551|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK043806|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK137354|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK162893|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	BC094603|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	AK139970|Gabra4|14397|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4
mm9_v1_chr11_+_60231046_60231167	0.0513436	GLI1..3.p2	AK077759|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AJ404329|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr12_+_103521406_103521481	0.0510451	GLI1..3.p2	AK166196|Rin3|217835|Ras and Rab interactor 3	AK171301|Rin3|217835|Ras and Rab interactor 3	AK154522|Rin3|217835|Ras and Rab interactor 3	AK171311|Rin3|217835|Ras and Rab interactor 3
mm9_v1_chr2_+_37298785_37298902	0.0509823	GLI1..3.p2	NM_146121|Rabgap1|227800|RAB GTPase activating protein 1	AK031315|Rabgap1|227800|RAB GTPase activating protein 1	AK021286|Rabgap1|227800|RAB GTPase activating protein 1	BC138337|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr5_-_92471603_92471743	0.0508278	GLI1..3.p2	AK145688|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK139820|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK030598|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029067|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm9_v1_chr6_+_87859720_87859763	0.0508062	GLI1..3.p2	AK192006|Copg|54161|coatomer protein complex, subunit gamma	AK196464|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr12_-_73186299_73186425	0.0507729	GLI1..3.p2	AK018449|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	NM_026038|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	BC004753|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	AK137154|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	AK012954|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene
mm9_v1_chr14_+_31815002_31815071	0.0506748	GLI1..3.p2	AK160461|Glt8d1|76485|glycosyltransferase 8 domain containing 1	BC069873|Glt8d1|76485|glycosyltransferase 8 domain containing 1
mm9_v1_chr11_-_57332054_57332159	0.0505252	GLI1..3.p2	BC019518|Fam114a2|67726|family with sequence similarity 114, member A2	AK018570|Fam114a2|67726|family with sequence similarity 114, member A2	AK076316|Fam114a2|67726|family with sequence similarity 114, member A2	AK149763|Fam114a2|67726|family with sequence similarity 114, member A2	AK007968|Fam114a2|67726|family with sequence similarity 114, member A2	NM_001168667|Fam114a2|67726|family with sequence similarity 114, member A2	NM_001168668|Fam114a2|67726|family with sequence similarity 114, member A2	NM_026342|Fam114a2|67726|family with sequence similarity 114, member A2
mm9_v1_chr1_+_88600370_88600431	0.0504926	GLI1..3.p2	AK050762|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	NM_001172157|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	NM_153530|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK079867|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK031180|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK029652|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	AK040613|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2	BC036177|Dis3l2|208718|DIS3 mitotic control homolog (S. cerevisiae)-like 2
mm9_v1_chr11_-_50051972_50051973	0.0503073	GLI1..3.p2	BC028760|Ltc4s|17001|leukotriene C4 synthase	NM_008521|Ltc4s|17001|leukotriene C4 synthase	U27195|Ltc4s|17001|leukotriene C4 synthase
mm9_v1_chr12_-_70891641_70891693	0.0502691	GLI1..3.p2	BC115909|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)	BC118055|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)	AK016781|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)	NM_183294|Cdkl1|71091|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm9_v1_chr7_-_52230179_52230183	0.050114	GLI1..3.p2	AK035790|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr10_-_33671000_33671074	0.0500853	GLI1..3.p2	AK052071|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK160928|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK046191|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK164710|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	NM_028287|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK012263|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	BC089514|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK077730|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK164346|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK077304|Zufsp|72580|zinc finger with UFM1-specific peptidase domain	AK172184|Zufsp|72580|zinc finger with UFM1-specific peptidase domain
mm9_v1_chr16_-_90284552_90284747	0.0498148	GLI1..3.p2	BC053096|Scaf4|224432|SR-related CTD-associated factor 4	AK045266|Scaf4|224432|SR-related CTD-associated factor 4	BC057592|Scaf4|224432|SR-related CTD-associated factor 4	NM_178923|Scaf4|224432|SR-related CTD-associated factor 4	AK048239|Scaf4|224432|SR-related CTD-associated factor 4	AK173120|Scaf4|224432|SR-related CTD-associated factor 4
mm9_v1_chr7_-_86877026_86877059	0.0495979	GLI1..3.p2	AY161165|Plin1|103968|perilipin 1	AK031445|Plin1|103968|perilipin 1
mm9_v1_chr6_-_112897259_112897274	0.0495483	GLI1..3.p2	AK045508|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	AK051262|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3	NM_080448|Srgap3|259302|SLIT-ROBO Rho GTPase activating protein 3
mm9_v1_chr5_+_125956283_125956442	0.0495099	GLI1..3.p2	AB054122|Aacs|78894|acetoacetyl-CoA synthetase	AK034184|Aacs|78894|acetoacetyl-CoA synthetase	AB056114|Aacs|78894|acetoacetyl-CoA synthetase	AK206715|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr6_-_50546585_50546591	0.0493463	GLI1..3.p2	AK161510|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	AK014840|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	NM_027564|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	BC055110|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene
mm9_v1_chr18_-_25637786_25637794	0.0493113	GLI1..3.p2	AK078071|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr9_-_114843103_114843123	0.0491722	GLI1..3.p2	NM_175380|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr11_-_3997116_3997172	0.0490726	GLI1..3.p2	AK008068|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)
mm9_v1_chr9_-_107192018_107192146	0.0489223	GLI1..3.p2	AK051962|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK078977|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK172578|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK172344|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK151881|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3	AK144637|Mapkapk3|102626|mitogen-activated protein kinase-activated protein kinase 3
mm9_v1_chr10_-_75130829_75130842	0.0486899	GLI1..3.p2	AK170921|Cabin1|104248|calcineurin binding protein 1
mm9_v1_chr10_+_90545782_90545789	0.048642	GLI1..3.p2	NM_026166|Ikbip|67454|IKBKB interacting protein	NM_027078|Ikbip|67454|IKBKB interacting protein
mm9_v1_chr6_-_88577424_88577443	0.0485937	GLI1..3.p2	AK014702|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_001142724|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_029013|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	AK016973|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12
mm9_v1_chr12_+_82732188_82732357	0.0484507	GLI1..3.p2	AK172918|Ttc9|69480|tetratricopeptide repeat domain 9	BC028891|Ttc9|69480|tetratricopeptide repeat domain 9	AK133456|Ttc9|69480|tetratricopeptide repeat domain 9	NM_001033149|Ttc9|69480|tetratricopeptide repeat domain 9	BC139242|Ttc9|69480|tetratricopeptide repeat domain 9	BC139244|Ttc9|69480|tetratricopeptide repeat domain 9
mm9_v1_chr9_-_114842996_114843065	0.0484405	GLI1..3.p2	AK050572|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK172886|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr2_+_177493957_177493997	0.0483971	GLI1..3.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr16_+_18052952_18053027	0.0483265	GLI1..3.p2	AK019346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	NM_010047|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK160342|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr14_-_63796620_63796725	0.048196	GLI1..3.p2	AK168629|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	BC054722|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	NM_010191|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	D29016|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK162294|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	BC138301|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK158633|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	BC138302|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK076062|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK146766|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1	AK169317|Fdft1|14137|farnesyl diphosphate farnesyl transferase 1
mm9_v1_chr19_-_42276620_42276741	0.0478351	GLI1..3.p2	BC032921|Sfrp5|54612|secreted frizzled-related sequence protein 5	AF117759|Sfrp5|54612|secreted frizzled-related sequence protein 5	NM_018780|Sfrp5|54612|secreted frizzled-related sequence protein 5
mm9_v1_chr6_+_86145220_86145449	0.0476936	GLI1..3.p2	AK010785|Tgfa|21802|transforming growth factor alpha	AK165017|Tgfa|21802|transforming growth factor alpha	NM_031199|Tgfa|21802|transforming growth factor alpha	AK166321|Tgfa|21802|transforming growth factor alpha	U65016|Tgfa|21802|transforming growth factor alpha	BC132185|Tgfa|21802|transforming growth factor alpha	BC132211|Tgfa|21802|transforming growth factor alpha
mm9_v1_chr7_+_19967358_19967392	0.04768	GLI1..3.p2	AK141692|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082323|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK145969|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	AK082761|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	NM_007949|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2	BC034517|Ercc2|13871|excision repair cross-complementing rodent repair deficiency, complementation group 2
mm9_v1_chr17_-_23700954_23701075	0.0476483	GLI1..3.p2	
mm9_v1_chr17_-_13153182_13153211	0.0474719	GLI1..3.p2	AK013275|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2
mm9_v1_chr8_+_23970006_23970020	0.0474333	GLI1..3.p2	AK028058|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK082463|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	NM_001081149|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK039615|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK036885|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK054322|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK132474|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3	AK143408|Myst3|244349|MYST histone acetyltransferase (monocytic leukemia) 3
mm9_v1_chr11_+_29642253_29642464	0.0473673	GLI1..3.p2	AK186869|Rtn4|68585|reticulon 4	AK186438|Rtn4|68585|reticulon 4	AK047253|Rtn4|68585|reticulon 4
mm9_v1_chr11_-_120433999_120434040	0.0471208	GLI1..3.p2	AK218978|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK207057|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK215676|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide
mm9_v1_chr7_+_148247172_148247172	0.0471072	GLI1..3.p2	AB114827|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4	NM_177897|B4galnt4|330671|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm9_v1_chr11_-_86358252_86358308	0.0470779	GLI1..3.p2	BC038491|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	BC071244|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK032724|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK085687|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK135716|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	AK163258|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_001114334|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1	NM_028259|Rps6kb1|72508|ribosomal protein S6 kinase, polypeptide 1
mm9_v1_chr2_+_91366928_91366961	0.0468339	GLI1..3.p2	AK015282|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr3_+_95428905_95429041	0.0467475	GLI1..3.p2	AK006149|Ensa|56205|endosulfine alpha	AK149726|Ensa|56205|endosulfine alpha	AK161290|Ensa|56205|endosulfine alpha	BC059724|Ensa|56205|endosulfine alpha	BC020533|Ensa|56205|endosulfine alpha	BC058802|Ensa|56205|endosulfine alpha	AJ005985|Ensa|56205|endosulfine alpha
mm9_v1_chr13_+_55698200_55698219	0.0467147	GLI1..3.p2	
mm9_v1_chr4_+_104829963_104829965	0.0465516	GLI1..3.p2	BC005558|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr5_+_145928196_145928272	0.0464693	GLI1..3.p2	EU588393|Cpsf4|54188|cleavage and polyadenylation specific factor 4	EU588394|Cpsf4|54188|cleavage and polyadenylation specific factor 4	AF033201|Cpsf4|54188|cleavage and polyadenylation specific factor 4
mm9_v1_chr15_-_84387921_84388066	0.0464609	GLI1..3.p2	BC058638|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr2_-_60047804_60047888	0.0464061	GLI1..3.p2	AK166079|Baz2b|407823|bromodomain adjacent to zinc finger domain, 2B
mm9_v1_chr9_+_100543866_100543977	0.0463025	GLI1..3.p2	AK043215|Stag1|20842|stromal antigen 1	AK048671|Stag1|20842|stromal antigen 1
mm9_v1_chr14_-_27353156_27353225	0.0461399	GLI1..3.p2	AK129403|Slmap|83997|sarcolemma associated protein	NM_032008|Slmap|83997|sarcolemma associated protein
mm9_v1_chr16_-_45724720_45724763	0.0461086	GLI1..3.p2	AK012333|Tagln3|56370|transgelin 3
mm9_v1_chr2_+_143741243_143741349	0.0460997	GLI1..3.p2	AK078898|Dstn|56431|destrin	AB025406|Dstn|56431|destrin	BC131926|Dstn|56431|destrin
mm9_v1_chr4_-_143967835_143967835	0.0460818	GLI1..3.p2	NM_001115077|Gm13125|627009|predicted gene 13125
mm9_v1_chr11_-_61059170_61059485	0.046045	GLI1..3.p2	AK198407|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK192800|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK198241|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2
mm9_v1_chr17_-_32326407_32326493	0.0460081	GLI1..3.p2	AK132483|Ephx3|71932|epoxide hydrolase 3	NM_001033163|Ephx3|71932|epoxide hydrolase 3	AK010021|Ephx3|71932|epoxide hydrolase 3	BC145797|Ephx3|71932|epoxide hydrolase 3
mm9_v1_chr1_-_136852427_136852528	0.0459276	GLI1..3.p2	BC145746|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK046012|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK046167|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK080855|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK141375|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK042847|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	NM_001081307|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK007727|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm9_v1_chr11_+_58680717_58680792	0.0456399	GLI1..3.p2	AK030099|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	AK134479|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	BC058081|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene	NM_172403|2810021J22Rik|69944|RIKEN cDNA 2810021J22 gene
mm9_v1_chr13_-_48966134_48966155	0.0456389	GLI1..3.p2	AB221591|Phf2|18676|PHD finger protein 2
mm9_v1_chr18_+_65960170_65960280	0.0455558	GLI1..3.p2	AK003027|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	AK003411|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	AK007641|Sec11c|66286|SEC11 homolog C (S. cerevisiae)	NM_025468|Sec11c|66286|SEC11 homolog C (S. cerevisiae)
mm9_v1_chr1_-_136131963_136131973	0.0453856	GLI1..3.p2	AK043954|Adora1|11539|adenosine A1 receptor
mm9_v1_chr5_-_109058762_109058763	0.0452577	GLI1..3.p2	BC065109|Gak|231580|cyclin G associated kinase
mm9_v1_chr2_+_78709363_78709419	0.0452054	GLI1..3.p2	AK168072|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK048227|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	AK076011|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	X92664|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr6_-_125115619_125115626	0.0451023	GLI1..3.p2	AK160753|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK164415|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	GU214026|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK002273|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK081405|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK140794|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK146435|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK147738|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK147891|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK160399|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase	AK168217|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr9_-_78290953_78291043	0.0450406	GLI1..3.p2	BC052196|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	NM_173386|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK078662|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK054330|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK145268|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK154165|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145651|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145653|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK030292|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene
mm9_v1_chr1_-_133176085_133176148	0.0450215	GLI1..3.p2	AK149911|Ikbke|56489|inhibitor of kappaB kinase epsilon	AK088580|Ikbke|56489|inhibitor of kappaB kinase epsilon	AK153046|Ikbke|56489|inhibitor of kappaB kinase epsilon	NM_019777|Ikbke|56489|inhibitor of kappaB kinase epsilon
mm9_v1_chr19_+_36422888_36423026	0.0449825	GLI1..3.p2	AK002387|Pcgf5|76073|polycomb group ring finger 5	AK080025|Pcgf5|76073|polycomb group ring finger 5
mm9_v1_chr6_-_87740264_87740322	0.0448187	GLI1..3.p2	AK050098|Rab43|69834|RAB43, member RAS oncogene family
mm9_v1_chr3_+_157197301_157197382	0.044702	GLI1..3.p2	AK150291|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK152536|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168613|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167983|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167766|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC049115|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168162|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169335|Zranb2|53861|zinc finger, RAN-binding domain containing 2	NM_017381|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146275|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK160862|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK167756|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK168033|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC132547|Zranb2|53861|zinc finger, RAN-binding domain containing 2	BC138575|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK166534|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK169114|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AK146854|Zranb2|53861|zinc finger, RAN-binding domain containing 2	AF133818|Zranb2|53861|zinc finger, RAN-binding domain containing 2
mm9_v1_chr15_+_12754582_12754660	0.0446457	GLI1..3.p2	AK144147|Drosha|14000|drosha, ribonuclease type III	BC088999|Drosha|14000|drosha, ribonuclease type III	AK148640|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr2_-_28695789_28695879	0.0445486	GLI1..3.p2	BC117920|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC117919|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK030351|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC095998|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	BC061476|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK146401|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK146403|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK150650|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK151179|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK153102|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	AK141269|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	NM_001166033|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4	NM_172977|Gtf3c4|269252|general transcription factor IIIC, polypeptide 4
mm9_v1_chr2_+_91570249_91570297	0.0444278	GLI1..3.p2	NM_001080754|Ambra1|228361|autophagy/beclin 1 regulator 1	NM_172669|Ambra1|228361|autophagy/beclin 1 regulator 1
mm9_v1_chr18_-_60760086_60760117	0.044379	GLI1..3.p2	AK034012|Synpo|104027|synaptopodin
mm9_v1_chr11_+_73012929_73013003	0.0442744	GLI1..3.p2	AK015273|Shpk|74637|sedoheptulokinase	AK171027|Shpk|74637|sedoheptulokinase	BC054721|Shpk|74637|sedoheptulokinase	BC056433|Shpk|74637|sedoheptulokinase	NM_029031|Shpk|74637|sedoheptulokinase
mm9_v1_chr16_+_3838974_3838976	0.0441505	GLI1..3.p2	NM_008762|Olfr15|18312|olfactory receptor 15	BC100680|Olfr15|18312|olfactory receptor 15	BC100685|Olfr15|18312|olfactory receptor 15	BC115838|Olfr15|18312|olfactory receptor 15	BC100679|Olfr15|18312|olfactory receptor 15
mm9_v1_chr7_-_150646758_150646786	0.0441403	GLI1..3.p2	U20553|Cdkn1c|12577|cyclin-dependent kinase inhibitor 1C (P57)
mm9_v1_chr17_+_46520659_46520738	0.0440297	GLI1..3.p2	NM_021346|Zfp318|57908|zinc finger protein 318	NM_207671|Zfp318|57908|zinc finger protein 318
mm9_v1_chr2_+_173485260_173485380	0.0440223	GLI1..3.p2	AK147619|Rab22a|19334|RAB22A, member RAS oncogene family	AK150617|Rab22a|19334|RAB22A, member RAS oncogene family	AK146594|Rab22a|19334|RAB22A, member RAS oncogene family	NM_024436|Rab22a|19334|RAB22A, member RAS oncogene family	AK021398|Rab22a|19334|RAB22A, member RAS oncogene family	AK149200|Rab22a|19334|RAB22A, member RAS oncogene family	BC006596|Rab22a|19334|RAB22A, member RAS oncogene family	AK014407|Rab22a|19334|RAB22A, member RAS oncogene family	AK031667|Rab22a|19334|RAB22A, member RAS oncogene family
mm9_v1_chr9_+_64659238_64659350	0.0440044	GLI1..3.p2	AK158279|Dennd4a|102442|DENN/MADD domain containing 4A	AK158840|Dennd4a|102442|DENN/MADD domain containing 4A	AK051202|Dennd4a|102442|DENN/MADD domain containing 4A	AK089365|Dennd4a|102442|DENN/MADD domain containing 4A	AK158187|Dennd4a|102442|DENN/MADD domain containing 4A	BC172087|Dennd4a|102442|DENN/MADD domain containing 4A
mm9_v1_chr17_-_32967155_32967192	0.0436425	GLI1..3.p2	BC096552|Zfp799|240064|zinc finger protein 799	BC062813|Zfp799|240064|zinc finger protein 799	AK083640|Zfp799|240064|zinc finger protein 799	AK137037|Zfp799|240064|zinc finger protein 799	AK031686|Zfp799|240064|zinc finger protein 799	NM_177359|Zfp799|240064|zinc finger protein 799
mm9_v1_chr4_+_154230308_154230456	0.0435773	GLI1..3.p2	NM_172878|Ttc34|242800|tetratricopeptide repeat domain 34	AK030055|Ttc34|242800|tetratricopeptide repeat domain 34	BC068299|Ttc34|242800|tetratricopeptide repeat domain 34
mm9_v1_chr16_+_22920486_22920556	0.0435309	GLI1..3.p2	AY138460|Fetub|59083|fetuin beta	BC018341|Fetub|59083|fetuin beta
mm9_v1_chr11_+_116704828_116704913	0.0430143	GLI1..3.p2	NM_028865|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene	AK135294|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene	AK168267|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene	BC026936|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene
mm9_v1_chr1_-_193007202_193007214	0.0427917	GLI1..3.p2	BC019946|Atf3|11910|activating transcription factor 3	NM_007498|Atf3|11910|activating transcription factor 3	AK133965|Atf3|11910|activating transcription factor 3
mm9_v1_chr9_-_100446544_100446556	0.0427274	GLI1..3.p2	AF043259|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1
mm9_v1_chr2_+_11093936_11094008	0.0426641	GLI1..3.p2	AK037664|Prkcq|18761|protein kinase C, theta	D11091|Prkcq|18761|protein kinase C, theta	NM_008859|Prkcq|18761|protein kinase C, theta
mm9_v1_chr8_+_112603609_112603709	0.0423045	GLI1..3.p2	NM_175480|Zfp612|234725|zinc finger protein 612	BC048413|Zfp612|234725|zinc finger protein 612	AK133449|Zfp612|234725|zinc finger protein 612	AK046220|Zfp612|234725|zinc finger protein 612
mm9_v1_chr4_-_123395382_123395431	0.0422346	GLI1..3.p2	BC002163|BC002163|170658|NADH dehydrogenase Fe-S protein 5 pseudogene	AK152845|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	AK148505|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	NM_001030274|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5
mm9_v1_chr11_-_77978936_77979062	0.042199	GLI1..3.p2	AK178796|Traf4|22032|TNF receptor associated factor 4	AF233449|Traf4|22032|TNF receptor associated factor 4	AK035056|Traf4|22032|TNF receptor associated factor 4	AK040877|Traf4|22032|TNF receptor associated factor 4	BC020455|Traf4|22032|TNF receptor associated factor 4	AK053900|Traf4|22032|TNF receptor associated factor 4	NM_009423|Traf4|22032|TNF receptor associated factor 4
mm9_v1_chr11_+_120645606_120645625	0.0421427	GLI1..3.p2	BC103782|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr7_+_148414663_148414708	0.0421085	GLI1..3.p2	NM_001081118|Phrf1|101471|PHD and ring finger domains 1
mm9_v1_chr11_+_98671461_98671474	0.0420265	GLI1..3.p2	AK145886|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr10_-_80204945_80204960	0.0420116	GLI1..3.p2	BC037477|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	BC048786|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	BC022171|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	AB004305|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit	NM_007460|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chrX_-_163023624_163023647	0.0418974	GLI1..3.p2	AK078534|Egfl6|54156|EGF-like-domain, multiple 6	BC117702|Egfl6|54156|EGF-like-domain, multiple 6	AJ245672|Egfl6|54156|EGF-like-domain, multiple 6	AK053738|Egfl6|54156|EGF-like-domain, multiple 6	NM_019397|Egfl6|54156|EGF-like-domain, multiple 6
mm9_v1_chr2_-_167469448_167469594	0.0418648	GLI1..3.p2	AK188596|Tmem189|407243|transmembrane protein 189	AK197639|Tmem189|407243|transmembrane protein 189
mm9_v1_chr2_-_77008655_77008700	0.0418064	GLI1..3.p2	AK045498|Ccdc141|545428|coiled-coil domain containing 141	AK011952|Ccdc141|545428|coiled-coil domain containing 141	AK053175|Ccdc141|545428|coiled-coil domain containing 141	NM_001025576|Ccdc141|545428|coiled-coil domain containing 141	AK041121|Ccdc141|545428|coiled-coil domain containing 141
mm9_v1_chr3_-_87734023_87734090	0.0416896	GLI1..3.p2	AK082223|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	BC012224|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK165264|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK030684|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK035389|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK148128|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1
mm9_v1_chr11_-_69419419_69419489	0.041601	GLI1..3.p2	BC058763|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	BC034586|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	AK158321|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	AK141786|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide	NM_013415|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr12_-_88443285_88443488	0.0415957	GLI1..3.p2	AJ245945|Ngb|64242|neuroglobin	AK165775|Ngb|64242|neuroglobin	AK140173|Ngb|64242|neuroglobin	BC024263|Ngb|64242|neuroglobin	NM_022414|Ngb|64242|neuroglobin
mm9_v1_chr4_-_62180914_62181170	0.0415176	GLI1..3.p2	BC018236|Alad|17025|aminolevulinate, delta-, dehydratase	AK167673|Alad|17025|aminolevulinate, delta-, dehydratase	AK002300|Alad|17025|aminolevulinate, delta-, dehydratase	AK032908|Alad|17025|aminolevulinate, delta-, dehydratase	AK168119|Alad|17025|aminolevulinate, delta-, dehydratase	AK168132|Alad|17025|aminolevulinate, delta-, dehydratase	BC055930|Alad|17025|aminolevulinate, delta-, dehydratase	NM_008525|Alad|17025|aminolevulinate, delta-, dehydratase
mm9_v1_chr15_-_89422293_89422353	0.041349	GLI1..3.p2	AK170205|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK004012|Rabl2|68708|RAB, member of RAS oncogene family-like 2	BC030376|Rabl2|68708|RAB, member of RAS oncogene family-like 2	AK051232|Rabl2|68708|RAB, member of RAS oncogene family-like 2	NM_026817|Rabl2|68708|RAB, member of RAS oncogene family-like 2
mm9_v1_chr11_+_102291759_102291826	0.0413463	GLI1..3.p2	AK018744|Grn|14824|granulin	AK013678|Grn|14824|granulin	AK147932|Grn|14824|granulin	AK149570|Grn|14824|granulin	AK150205|Grn|14824|granulin	AK150746|Grn|14824|granulin	AK150881|Grn|14824|granulin	AK151007|Grn|14824|granulin	AK151162|Grn|14824|granulin	AK151343|Grn|14824|granulin	AK151713|Grn|14824|granulin	AK152048|Grn|14824|granulin	AK152087|Grn|14824|granulin	AK152705|Grn|14824|granulin	AK152765|Grn|14824|granulin	AK153269|Grn|14824|granulin	AK153289|Grn|14824|granulin	AK153418|Grn|14824|granulin	AK153470|Grn|14824|granulin	AK154492|Grn|14824|granulin	AK160033|Grn|14824|granulin	AK159809|Grn|14824|granulin	AK150125|Grn|14824|granulin	AK151756|Grn|14824|granulin	AK150717|Grn|14824|granulin	AK159557|Grn|14824|granulin
mm9_v1_chr15_+_99125768_99125839	0.0411431	GLI1..3.p2	AF135440|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	NM_018786|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr12_-_70458116_70458130	0.0410974	GLI1..3.p2	BC037106|Nemf|66244|nuclear export mediator factor	AK039497|Nemf|66244|nuclear export mediator factor
mm9_v1_chr9_+_21397379_21397470	0.041032	GLI1..3.p2	AK088045|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK089121|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	BC025883|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK034762|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chr14_+_105658034_105658057	0.0409371	GLI1..3.p2	AK084288|Ndfip2|76273|Nedd4 family interacting protein 2
mm9_v1_chr17_-_59152686_59152744	0.0409237	GLI1..3.p2	BC057657|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK147867|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK083846|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	AK002641|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12	NM_026497|Nudt12|67993|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm9_v1_chr13_-_68720969_68721013	0.0407874	GLI1..3.p2	AK155359|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	AK163449|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	AK162978|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	BC031565|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	AK028628|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase	NM_172480|Mtrr|210009|5-methyltetrahydrofolate-homocysteine methyltransferase reductase
mm9_v1_chr7_-_148042137_148042161	0.0407165	GLI1..3.p2	AF003999|Bet1l|54399|blocked early in transport 1 homolog (S. cerevisiae)-like
mm9_v1_chr9_-_56008770_56008818	0.0407056	GLI1..3.p2	AK159914|Tspan3|56434|tetraspanin 3
mm9_v1_chr17_+_24641034_24641180	0.0406821	GLI1..3.p2	AK049987|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr2_+_4322020_4322021	0.0406512	GLI1..3.p2	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr17_-_25934035_25934080	0.0406327	GLI1..3.p2	BC132177|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr8_+_119983566_119983649	0.0404886	GLI1..3.p2	AK049761|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr9_-_99040505_99040647	0.0404112	GLI1..3.p2	AK090116|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	BC039650|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	AK154106|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide	NM_029094|Pik3cb|74769|phosphatidylinositol 3-kinase, catalytic, beta polypeptide
mm9_v1_chr2_-_168032561_168032640	0.0404038	GLI1..3.p2	NM_009628|Adnp|11538|activity-dependent neuroprotective protein	AK129214|Adnp|11538|activity-dependent neuroprotective protein
mm9_v1_chr1_-_74647935_74647979	0.0402301	GLI1..3.p2	BC022715|Rnf25|57751|ring finger protein 25	AK171752|Rnf25|57751|ring finger protein 25	AF171060|Rnf25|57751|ring finger protein 25	BC037100|Rnf25|57751|ring finger protein 25	BC048821|Rnf25|57751|ring finger protein 25	AK002399|Rnf25|57751|ring finger protein 25	NM_021313|Rnf25|57751|ring finger protein 25
mm9_v1_chr5_+_114830615_114830615	0.0401736	GLI1..3.p2	NM_054093|Ube3b|117146|ubiquitin protein ligase E3B
mm9_v1_chr17_-_7152648_7152744	0.0401463	GLI1..3.p2	AK005904|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	AK016473|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK161285|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK006083|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	NM_001083945|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK076872|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)
mm9_v1_chr1_+_92811676_92811782	0.0400395	GLI1..3.p2	NM_053015|Mlph|171531|melanophilin	AF384098|Mlph|171531|melanophilin	BC006900|Mlph|171531|melanophilin	AK008973|Mlph|171531|melanophilin	AK019883|Mlph|171531|melanophilin	AK148274|Mlph|171531|melanophilin	BC150804|Mlph|171531|melanophilin
mm9_v1_chr5_-_68238444_68238587	0.039991	GLI1..3.p2	BC129872|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	U75321|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK220560|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr8_+_112302530_112302620	0.0399848	GLI1..3.p2	AK036387|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	NM_009677|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	X54424|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	AK145821|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC052703|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit	BC054535|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr3_+_35653189_35653308	0.0397929	GLI1..3.p2	BC076603|Atp11b|76295|ATPase, class VI, type 11B
mm9_v1_chrX_-_46641384_46641392	0.0397532	GLI1..3.p2	AK077508|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK133956|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK137736|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK139897|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	BC025915|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2
mm9_v1_chr5_+_117864837_117864837	0.0396715	GLI1..3.p2	DQ531035|Ksr2|333050|kinase suppressor of ras 2	NM_001114545|Ksr2|333050|kinase suppressor of ras 2
mm9_v1_chr14_-_103498191_103498415	0.0395375	GLI1..3.p2	BC046330|Fbxl3|50789|F-box and leucine-rich repeat protein 3	AK166128|Fbxl3|50789|F-box and leucine-rich repeat protein 3	BC067203|Fbxl3|50789|F-box and leucine-rich repeat protein 3	BC026835|Fbxl3|50789|F-box and leucine-rich repeat protein 3	AF176521|Fbxl3|50789|F-box and leucine-rich repeat protein 3
mm9_v1_chr9_+_77602377_77602381	0.0391869	GLI1..3.p2	AK169676|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr5_-_107718388_107718399	0.0390916	GLI1..3.p2	AF039601|Tgfbr3|21814|transforming growth factor, beta receptor III
mm9_v1_chr15_+_102044730_102044866	0.0390793	GLI1..3.p2	AK004098|Zfp740|68744|zinc finger protein 740
mm9_v1_chr7_-_118214471_118214595	0.0390662	GLI1..3.p2	AK153701|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr11_-_59015886_59015891	0.0390548	GLI1..3.p2	AK017172|2610507I01Rik|72203|RIKEN cDNA 2610507I01 gene	AK162965|2610507I01Rik|72203|RIKEN cDNA 2610507I01 gene
mm9_v1_chr15_-_25343351_25343374	0.038975	GLI1..3.p2	
mm9_v1_chr7_-_36539369_36539472	0.0389627	GLI1..3.p2	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr13_+_32893953_32893987	0.0388495	GLI1..3.p2	AK082078|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr11_+_92961160_92961203	0.0387205	GLI1..3.p2	AK038512|Car10|72605|carbonic anhydrase 10
mm9_v1_chr7_-_133520899_133520943	0.0387134	GLI1..3.p2	BC026854|Spns1|73658|spinster homolog 1 (Drosophila)	AK033907|Spns1|73658|spinster homolog 1 (Drosophila)	AF212372|Spns1|73658|spinster homolog 1 (Drosophila)	AK154353|Spns1|73658|spinster homolog 1 (Drosophila)	AK166931|Spns1|73658|spinster homolog 1 (Drosophila)	AK008721|Spns1|73658|spinster homolog 1 (Drosophila)
mm9_v1_chr2_-_93873363_93873460	0.0386361	GLI1..3.p2	AK210045|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12
mm9_v1_chr11_-_97643570_97643598	0.0385935	GLI1..3.p2	AK139855|Rpl23|65019|ribosomal protein L23
mm9_v1_chr3_+_89263114_89263157	0.0384339	GLI1..3.p2	AK150483|Pmvk|68603|phosphomevalonate kinase	AK168358|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chr14_-_77436363_77436492	0.0383799	GLI1..3.p2	AK152154|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK033565|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	NM_172488|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK153349|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene
mm9_v1_chr8_-_4259126_4259300	0.0383205	GLI1..3.p2	AK158759|Ctxn1|330695|cortexin 1	BC028881|Ctxn1|330695|cortexin 1	AK154120|Ctxn1|330695|cortexin 1	NM_183315|Ctxn1|330695|cortexin 1
mm9_v1_chr13_-_69750195_69750231	0.0383109	GLI1..3.p2	BC115468|Srd5a1|78925|steroid 5 alpha-reductase 1	BC115469|Srd5a1|78925|steroid 5 alpha-reductase 1	AK082819|Srd5a1|78925|steroid 5 alpha-reductase 1
mm9_v1_chr2_+_153171562_153171582	0.0381065	GLI1..3.p2	AK081063|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr11_-_86900220_86900252	0.0380668	GLI1..3.p2	AK031106|1200011M11Rik|74133|RIKEN cDNA 1200011M11 gene
mm9_v1_chr12_+_88367442_88367513	0.0379599	GLI1..3.p2	AK034410|Tmem63c|217733|transmembrane protein 63c	AK043536|Tmem63c|217733|transmembrane protein 63c	BC056936|Tmem63c|217733|transmembrane protein 63c	BC057088|Tmem63c|217733|transmembrane protein 63c	NM_172583|Tmem63c|217733|transmembrane protein 63c
mm9_v1_chr4_+_42962733_42962813	0.0376937	GLI1..3.p2	AK158535|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5	AF321322|Dnajb5|56323|DnaJ (Hsp40) homolog, subfamily B, member 5
mm9_v1_chr16_-_17201556_17201596	0.0376558	GLI1..3.p2	AK165620|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC106149|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC093503|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK167847|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	BC049075|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AJ130961|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	NM_009456|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	X97042|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK152522|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3	AK007265|Ube2l3|22195|ubiquitin-conjugating enzyme E2L 3
mm9_v1_chr16_-_52452766_52452798	0.037613	GLI1..3.p2	AY644766|Alcam|11658|activated leukocyte cell adhesion molecule	BC027280|Alcam|11658|activated leukocyte cell adhesion molecule	AB003026|Alcam|11658|activated leukocyte cell adhesion molecule
mm9_v1_chr15_-_5058532_5058532	0.0375643	GLI1..3.p2	NM_001163138|Card6|239319|caspase recruitment domain family, member 6
mm9_v1_chr16_-_76373266_76373271	0.0375566	GLI1..3.p2	AK156233|Nrip1|268903|nuclear receptor interacting protein 1	AK157467|Nrip1|268903|nuclear receptor interacting protein 1
mm9_v1_chr10_-_18735154_18735215	0.0375195	GLI1..3.p2	AK153238|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK088297|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	AK151921|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC050259|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC054806|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	BC060221|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3	NM_009397|Tnfaip3|21929|tumor necrosis factor, alpha-induced protein 3
mm9_v1_chr12_-_111840150_111840172	0.0374885	GLI1..3.p2	
mm9_v1_chr5_+_102194126_102194174	0.0373991	GLI1..3.p2	BC055292|Cds1|74596|CDP-diacylglycerol synthase 1	NM_173370|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr13_+_46513668_46513668	0.0373885	GLI1..3.p2	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr7_-_31514527_31514579	0.0373134	GLI1..3.p2	AK010168|Tmem147|69804|transmembrane protein 147	AK160267|Tmem147|69804|transmembrane protein 147	NM_027215|Tmem147|69804|transmembrane protein 147
mm9_v1_chr6_-_30254273_30254567	0.037269	GLI1..3.p2	U19854|Ube2h|22214|ubiquitin-conjugating enzyme E2H	BC008517|Ube2h|22214|ubiquitin-conjugating enzyme E2H	AK131688|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001170345|Gm2058|100039133|predicted gene 2058	AK161414|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001169576|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_009459|Ube2h|22214|ubiquitin-conjugating enzyme E2H
mm9_v1_chr11_+_4795308_4795373	0.0370098	GLI1..3.p2	AK040311|Thoc5|107829|THO complex 5	AK050734|Thoc5|107829|THO complex 5	NM_172438|Thoc5|107829|THO complex 5	BC039758|Thoc5|107829|THO complex 5	AK087099|Thoc5|107829|THO complex 5
mm9_v1_chr4_+_151706542_151706590	0.0369833	GLI1..3.p2	AK207296|Rpl22|19934|ribosomal protein L22
mm9_v1_chr17_-_80689815_80689815	0.036977	GLI1..3.p2	BC062952|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_001163759|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	NM_198942|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr2_+_155601077_155601159	0.036822	GLI1..3.p2	NM_010808|Mmp24|17391|matrix metallopeptidase 24	AJ010262|Mmp24|17391|matrix metallopeptidase 24	AB021226|Mmp24|17391|matrix metallopeptidase 24
mm9_v1_chr14_+_22318991_22319040	0.0368125	GLI1..3.p2	AK147509|Myst4|54169|MYST histone acetyltransferase monocytic leukemia 4
mm9_v1_chr4_-_120887671_120887722	0.036692	GLI1..3.p2	AK132452|Rlf|109263|rearranged L-myc fusion sequence	AK045021|Rlf|109263|rearranged L-myc fusion sequence
mm9_v1_chr6_-_13788580_13788612	0.0366915	GLI1..3.p2	AK047740|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr3_+_97462489_97462565	0.0366218	GLI1..3.p2	
mm9_v1_chr11_-_97643677_97643690	0.0365239	GLI1..3.p2	AK168133|Rpl23|65019|ribosomal protein L23	AF287271|Rpl23|65019|ribosomal protein L23	BC025918|Rpl23|65019|ribosomal protein L23	BC081448|Rpl23|65019|ribosomal protein L23
mm9_v1_chr3_+_88140181_88140184	0.0362702	GLI1..3.p2	AK143911|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	NM_178246|Smg5|229512|Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm9_v1_chr9_-_49606862_49606915	0.0362631	GLI1..3.p2	BC011310|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr12_+_111517438_111517469	0.0362468	GLI1..3.p2	AK140797|Dio3|107585|deiodinase, iodothyronine type III	AK146060|Dio3|107585|deiodinase, iodothyronine type III	NM_172119|Dio3|107585|deiodinase, iodothyronine type III	BC106847|Dio3|107585|deiodinase, iodothyronine type III	BC106848|Dio3|107585|deiodinase, iodothyronine type III
mm9_v1_chr2_+_181287207_181287250	0.0362106	GLI1..3.p2	AK135001|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr11_+_115676023_115676086	0.036006	GLI1..3.p2	BC117762|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	BC126953|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	NM_029557|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	AK002758|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)	AK089005|Tsen54|76265|tRNA splicing endonuclease 54 homolog (S. cerevisiae)
mm9_v1_chr14_+_46703700_46703706	0.035973	GLI1..3.p2	AK088453|Gm1821|218963|ubiquitin pseudogene
mm9_v1_chr15_+_12754561_12754569	0.0358899	GLI1..3.p2	NM_001130149|Drosha|14000|drosha, ribonuclease type III	NM_026799|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr18_-_25637339_25637341	0.0358761	GLI1..3.p2	AK038871|Celf4|108013|CUGBP, Elav-like family member 4
mm9_v1_chr12_+_111685371_111685434	0.0357141	GLI1..3.p2	NM_001135001|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr5_-_122043558_122043584	0.0356413	GLI1..3.p2	AK079602|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK150986|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK151826|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK153128|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK150920|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK151763|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial
mm9_v1_chr11_-_97436439_97436456	0.0354353	GLI1..3.p2	AF040944|Srcin1|56013|SRC kinase signaling inhibitor 1	NM_018873|Srcin1|56013|SRC kinase signaling inhibitor 1	U59873|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr7_-_137663474_137663533	0.035416	GLI1..3.p2	DQ093639|Ate1|11907|arginyltransferase 1	DQ093640|Ate1|11907|arginyltransferase 1	NM_001029895|Ate1|11907|arginyltransferase 1	AK138277|Ate1|11907|arginyltransferase 1
mm9_v1_chr6_+_113433656_113433876	0.0353518	GLI1..3.p2	BC025932|Creld1|171508|cysteine-rich with EGF-like domains 1	AK186017|Creld1|171508|cysteine-rich with EGF-like domains 1	AK195695|Creld1|171508|cysteine-rich with EGF-like domains 1	AK208544|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr1_+_74283325_74283370	0.0353017	GLI1..3.p2	BC115750|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr16_+_57121795_57121895	0.0352978	GLI1..3.p2	AK145458|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC057096|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK012084|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK083586|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK150429|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	NM_138599|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK161720|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC139420|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	BC139421|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK169809|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK122356|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr18_-_61885933_61886002	0.0352437	GLI1..3.p2	AF041060|Grpel2|17714|GrpE-like 2, mitochondrial	BC094583|Grpel2|17714|GrpE-like 2, mitochondrial	BC068232|Grpel2|17714|GrpE-like 2, mitochondrial	AK012634|Grpel2|17714|GrpE-like 2, mitochondrial	AK134455|Grpel2|17714|GrpE-like 2, mitochondrial	AK003011|Grpel2|17714|GrpE-like 2, mitochondrial	AK082983|Grpel2|17714|GrpE-like 2, mitochondrial	BC120747|Grpel2|17714|GrpE-like 2, mitochondrial	AK145493|Grpel2|17714|GrpE-like 2, mitochondrial	NM_021296|Grpel2|17714|GrpE-like 2, mitochondrial
mm9_v1_chr1_+_58859345_58859473	0.0351679	GLI1..3.p2	NM_001080126|Casp8|12370|caspase 8	AK153340|Casp8|12370|caspase 8
mm9_v1_chr6_+_116288073_116288073	0.0351585	GLI1..3.p2	AK165647|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr7_-_133616266_133616638	0.0350728	GLI1..3.p2	AK173145|Sh2b1|20399|SH2B adaptor protein 1	AK216851|Sh2b1|20399|SH2B adaptor protein 1	AF074329|Sh2b1|20399|SH2B adaptor protein 1	BC011422|Sh2b1|20399|SH2B adaptor protein 1
mm9_v1_chr2_+_92215395_92215518	0.0349675	GLI1..3.p2	AK143073|Pex16|18633|peroxisomal biogenesis factor 16	NM_145122|Pex16|18633|peroxisomal biogenesis factor 16
mm9_v1_chr19_+_43764161_43764183	0.0349086	GLI1..3.p2	AK170546|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7	NM_053103|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr5_-_149740575_149740591	0.0348797	GLI1..3.p2	AK049620|Katnal1|231912|katanin p60 subunit A-like 1
mm9_v1_chr4_-_151851624_151851635	0.0346991	GLI1..3.p2	AK143166|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr4_+_125181288_125181474	0.0346794	GLI1..3.p2	NM_008049|Ftl2|14337|ferritin light chain 2	AK145265|Ftl1|14325|ferritin light chain 1	AK213945|Gm15590|100270751|ferritin light chain 1 pseudogene	BC106145|Ftl1|14325|ferritin light chain 1	BC150761|Ftl2|14337|ferritin light chain 2	S89400|Ftl2|14337|ferritin light chain 2
mm9_v1_chrX_-_137491205_137491263	0.0346352	GLI1..3.p2	AB022022|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	BC026931|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	BC056196|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK009068|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK018233|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	AK136400|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	NM_001164177|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	NM_016883|Psmd10|53380|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm9_v1_chr11_+_57332162_57332229	0.0345416	GLI1..3.p2	AK076071|Mfap3|216760|microfibrillar-associated protein 3	NM_145426|Mfap3|216760|microfibrillar-associated protein 3	NM_180599|Mfap3|216760|microfibrillar-associated protein 3	AK042988|Mfap3|216760|microfibrillar-associated protein 3	AK080405|Mfap3|216760|microfibrillar-associated protein 3	AK155122|Mfap3|216760|microfibrillar-associated protein 3	BC006828|Mfap3|216760|microfibrillar-associated protein 3
mm9_v1_chr11_-_65981945_65982052	0.034437	GLI1..3.p2	AK082443|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK030981|Dnahc9|237806|dynein, axonemal, heavy chain 9	AK044263|Dnahc9|237806|dynein, axonemal, heavy chain 9	NM_001099633|Dnahc9|237806|dynein, axonemal, heavy chain 9
mm9_v1_chr8_+_86939262_86939275	0.0343787	GLI1..3.p2	AK147288|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	NM_007578|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147277|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147498|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147697|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr7_+_13063673_13063734	0.0340465	GLI1..3.p2	AK044645|Zfp606|67370|zinc finger protein 606	AK143200|Zfp606|67370|zinc finger protein 606	AK021179|Zfp606|67370|zinc finger protein 606	AK039817|Zfp606|67370|zinc finger protein 606	AK173278|Zfp606|67370|zinc finger protein 606	AK165095|Zfp606|67370|zinc finger protein 606	BC052747|Zfp606|67370|zinc finger protein 606
mm9_v1_chr6_-_3349470_3349570	0.0339786	GLI1..3.p2	BC079894|Samd9l|209086|sterile alpha motif domain containing 9-like	AK052535|Samd9l|209086|sterile alpha motif domain containing 9-like	NM_010156|Samd9l|209086|sterile alpha motif domain containing 9-like
mm9_v1_chr6_+_83067649_83067918	0.0337386	GLI1..3.p2	AK007528|Mogs|57377|mannosyl-oligosaccharide glucosidase
mm9_v1_chr2_+_164323024_164323043	0.0337015	GLI1..3.p2	NM_133779|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049171|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK049990|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK019717|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK090020|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK155057|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153462|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK153464|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK044499|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T	AK157226|Pigt|78928|phosphatidylinositol glycan anchor biosynthesis, class T
mm9_v1_chr5_+_37259906_37259968	0.0336755	GLI1..3.p2	AK032023|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform	AK049830|Ppp2r2c|269643|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform
mm9_v1_chr11_+_72832523_72832554	0.0333839	GLI1..3.p2	BC017529|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	AF117384|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chr7_-_118214192_118214323	0.0332928	GLI1..3.p2	AK037763|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr7_-_105326687_105326735	0.0332718	GLI1..3.p2	AK164293|Capn5|12337|calpain 5	NM_007602|Capn5|12337|calpain 5	U85020|Capn5|12337|calpain 5	Y10656|Capn5|12337|calpain 5	AK170034|Capn5|12337|calpain 5
mm9_v1_chr11_+_22890640_22890684	0.0332126	GLI1..3.p2	AK150601|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK152173|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK169339|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK167657|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK167846|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK167262|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)
mm9_v1_chr4_+_83171448_83171542	0.0330785	GLI1..3.p2	NM_001081012|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK170886|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK015166|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK029637|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK015563|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	AK041005|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	BC023323|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene	BC172165|4930473A06Rik|320226|RIKEN cDNA 4930473A06 gene
mm9_v1_chr17_-_25922419_25922537	0.0330315	GLI1..3.p2	BC083322|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC005586|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK047517|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK034798|Haghl|68977|hydroxyacylglutathione hydrolase-like	BC030466|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK032999|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK080454|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK154248|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK012748|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK021220|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr7_+_148043741_148043765	0.0329743	GLI1..3.p2	AK212668|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)
mm9_v1_chr8_-_19892900_19893049	0.0329655	GLI1..3.p2	AK036306|2610005L07Rik|381598|cadherin 11 pseudogene	AK135487|6820431F20Rik|547150|cadherin 11 pseudogene	BC064022|2610005L07Rik|381598|cadherin 11 pseudogene	AK033345|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK170069|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK083828|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK012880|2610005L07Rik|381598|cadherin 11 pseudogene	AK167066|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene	AK132389|A430108E01Rik|384382|RIKEN cDNA A430108E01 gene
mm9_v1_chr17_-_26338254_26338295	0.0328871	GLI1..3.p2	BC002032|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	NM_008113|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr1_+_66514959_66514998	0.0328255	GLI1..3.p2	AK081235|Unc80|329178|unc-80 homolog (C. elegans)	AK044008|Unc80|329178|unc-80 homolog (C. elegans)	BC116429|Unc80|329178|unc-80 homolog (C. elegans)	BC116430|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr6_+_95067923_95067958	0.0327446	GLI1..3.p2	AK167507|Kbtbd8|243574|kelch repeat and BTB (POZ) domain containing 8
mm9_v1_chr11_-_100007218_100007243	0.032735	GLI1..3.p2	BC034561|Krt19|16669|keratin 19	M28698|Krt19|16669|keratin 19	AB472075|Krt19|16669|keratin 19	BC085304|Krt19|16669|keratin 19	NM_008471|Krt19|16669|keratin 19
mm9_v1_chr6_-_143048580_143048646	0.032657	GLI1..3.p2	AK029825|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK021056|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	BC027763|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	AK143732|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_001109688|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029081|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene	NM_029897|5730419I09Rik|74741|RIKEN cDNA 5730419I09 gene
mm9_v1_chr12_-_81361077_81361181	0.0323013	GLI1..3.p2	DQ288940|Actn1|109711|actinin, alpha 1
mm9_v1_chr12_-_25323807_25323931	0.0321532	GLI1..3.p2	AK216072|Cox7a2l|20463|cytochrome c oxidase subunit VIIa polypeptide 2-like
mm9_v1_chr18_+_37571327_37571327	0.032061	GLI1..3.p2	NM_053135|Pcdhb10|93881|protocadherin beta 10
mm9_v1_chr10_+_80586394_80586698	0.0319765	GLI1..3.p2	AK140101|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK192399|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK202988|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK212487|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK216389|Map2k2|26396|mitogen-activated protein kinase kinase 2
mm9_v1_chr2_-_165113250_165113360	0.031908	GLI1..3.p2	AK170715|Slc35c2|228875|solute carrier family 35, member C2	AK155539|Slc35c2|228875|solute carrier family 35, member C2	BC094025|Slc35c2|228875|solute carrier family 35, member C2	AK053180|Slc35c2|228875|solute carrier family 35, member C2	AK160899|Slc35c2|228875|solute carrier family 35, member C2	BC018327|Slc35c2|228875|solute carrier family 35, member C2	NM_144893|Slc35c2|228875|solute carrier family 35, member C2	AK158331|Slc35c2|228875|solute carrier family 35, member C2
mm9_v1_chrX_-_91787351_91787352	0.031726	GLI1..3.p2	BC031461|Maged1|94275|melanoma antigen, family D, 1
mm9_v1_chr5_+_143734622_143734709	0.0316783	GLI1..3.p2	
mm9_v1_chr17_-_32525894_32525894	0.0316686	GLI1..3.p2	NM_011717|Wiz|22404|widely-interspaced zinc finger motifs
mm9_v1_chr8_-_72240722_72240846	0.0316196	GLI1..3.p2	BC079868|Zfp869|66869|zinc finger protein 869	AK088889|Zfp869|66869|zinc finger protein 869	AK134167|Zfp869|66869|zinc finger protein 869	AK004570|Zfp869|66869|zinc finger protein 869	AK030679|Zfp869|66869|zinc finger protein 869	AK136878|Zfp869|66869|zinc finger protein 869	NM_001039965|Zfp869|66869|zinc finger protein 869	NM_001039967|Zfp869|66869|zinc finger protein 869	AK083392|Zfp869|66869|zinc finger protein 869
mm9_v1_chr6_-_48791052_48791158	0.0313129	GLI1..3.p2	NM_001164209|Tmem176b|65963|transmembrane protein 176B
mm9_v1_chr1_+_9591492_9591529	0.0311448	GLI1..3.p2	AK043576|3110035E14Rik|76982|RIKEN cDNA 3110035E14 gene
mm9_v1_chr4_+_104829867_104829919	0.031057	GLI1..3.p2	AK159136|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr13_+_55546808_55546869	0.0310414	GLI1..3.p2	AK146119|Grk6|26385|G protein-coupled receptor kinase 6	AF040747|Grk6|26385|G protein-coupled receptor kinase 6	AF040748|Grk6|26385|G protein-coupled receptor kinase 6	AF040749|Grk6|26385|G protein-coupled receptor kinase 6	BC075719|Grk6|26385|G protein-coupled receptor kinase 6	Y15798|Grk6|26385|G protein-coupled receptor kinase 6	Y15799|Grk6|26385|G protein-coupled receptor kinase 6	Y15797|Grk6|26385|G protein-coupled receptor kinase 6	Y15800|Grk6|26385|G protein-coupled receptor kinase 6
mm9_v1_chr2_+_90585526_90585673	0.0309894	GLI1..3.p2	NM_018828|Fnbp4|55935|formin binding protein 4	U40750|Fnbp4|55935|formin binding protein 4
mm9_v1_chr4_+_126699209_126699282	0.0309343	GLI1..3.p2	AF272847|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr2_-_177183009_177183079	0.0308286	GLI1..3.p2	BC092145|Gm14322|626802|predicted gene 14322
mm9_v1_chr15_-_76368725_76368784	0.0307331	GLI1..3.p2	AK208517|Fbxl6|30840|F-box and leucine-rich repeat protein 6
mm9_v1_chr9_-_7872896_7873169	0.0307097	GLI1..3.p2	AK172636|Birc3|11796|baculoviral IAP repeat-containing 3	BC011338|Birc3|11796|baculoviral IAP repeat-containing 3	U88908|Birc3|11796|baculoviral IAP repeat-containing 3	AK162108|Birc3|11796|baculoviral IAP repeat-containing 3	NM_007464|Birc3|11796|baculoviral IAP repeat-containing 3
mm9_v1_chr17_-_25929201_25929366	0.0305906	GLI1..3.p2	AK132031|Fam173a|214917|family with sequence similarity 173, member A	BC096050|Fam173a|214917|family with sequence similarity 173, member A	NM_145410|Fam173a|214917|family with sequence similarity 173, member A	AK162337|Fam173a|214917|family with sequence similarity 173, member A	AK146214|Fam173a|214917|family with sequence similarity 173, member A	BC008155|Fam173a|214917|family with sequence similarity 173, member A
mm9_v1_chr11_+_29642059_29642120	0.0304701	GLI1..3.p2	AK213159|Rtn4|68585|reticulon 4	AK218108|Rtn4|68585|reticulon 4
mm9_v1_chr8_-_67373807_67373950	0.0304629	GLI1..3.p2	AK220570|Klhl2|77113|kelch-like 2, Mayven (Drosophila)
mm9_v1_chr12_+_3806955_3807159	0.0303015	GLI1..3.p2	NM_007872|Dnmt3a|13435|DNA methyltransferase 3A	AF503867|Dnmt3a|13435|DNA methyltransferase 3A	AK090132|Dnmt3a|13435|DNA methyltransferase 3A	AK147676|Dnmt3a|13435|DNA methyltransferase 3A	BC007466|Dnmt3a|13435|DNA methyltransferase 3A	AF068625|Dnmt3a|13435|DNA methyltransferase 3A	AK147263|Dnmt3a|13435|DNA methyltransferase 3A	AK147627|Dnmt3a|13435|DNA methyltransferase 3A	AK147642|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr10_+_126602394_126602451	0.0302577	GLI1..3.p2	BC022180|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr17_-_27760308_27760448	0.0301687	GLI1..3.p2	AF264064|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	NM_019837|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC046805|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	BC016534|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm9_v1_chr18_+_39152852_39152929	0.0299292	GLI1..3.p2	AK129176|Arhgap26|71302|Rho GTPase activating protein 26	BC141394|Arhgap26|71302|Rho GTPase activating protein 26
mm9_v1_chr7_-_97278443_97278523	0.0299221	GLI1..3.p2	AK019082|2310010J17Rik|78329|RIKEN cDNA 2310010J17 gene
mm9_v1_chr11_-_76212561_76212710	0.0298723	GLI1..3.p2	BC049614|Nxn|18230|nucleoredoxin	BC004688|Nxn|18230|nucleoredoxin	AK149075|Nxn|18230|nucleoredoxin	AK012352|Nxn|18230|nucleoredoxin	AK048109|Nxn|18230|nucleoredoxin	BC058244|Nxn|18230|nucleoredoxin	NM_008750|Nxn|18230|nucleoredoxin
mm9_v1_chr4_-_153471168_153471281	0.0297436	GLI1..3.p2	BC066045|Trp73|22062|transformation related protein 73	Y19235|Trp73|22062|transformation related protein 73	AK139633|Trp73|22062|transformation related protein 73	NM_001126330|Trp73|22062|transformation related protein 73	NM_001126331|Trp73|22062|transformation related protein 73
mm9_v1_chr2_-_155937440_155937537	0.0295726	GLI1..3.p2	
mm9_v1_chr6_-_72389278_72389380	0.0292119	GLI1..3.p2	AK190931|Mat2a|232087|methionine adenosyltransferase II, alpha	AK206552|Mat2a|232087|methionine adenosyltransferase II, alpha	AK206774|Mat2a|232087|methionine adenosyltransferase II, alpha	AK213948|Mat2a|232087|methionine adenosyltransferase II, alpha	AK215611|Mat2a|232087|methionine adenosyltransferase II, alpha	AK216312|Mat2a|232087|methionine adenosyltransferase II, alpha	AK219100|Mat2a|232087|methionine adenosyltransferase II, alpha
mm9_v1_chr13_-_95992547_95992641	0.0290581	GLI1..3.p2	AK083166|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr6_-_115625875_115625915	0.0288814	GLI1..3.p2	AB057663|Raf1|110157|v-raf-leukemia viral oncogene 1	AB077145|Raf1|110157|v-raf-leukemia viral oncogene 1
mm9_v1_chr8_-_3694155_3694179	0.0288581	GLI1..3.p2	M99371|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK080159|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	M34163|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	NM_013517|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK156654|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide	AK172591|Fcer2a|14128|Fc receptor, IgE, low affinity II, alpha polypeptide
mm9_v1_chr10_+_85763287_85763288	0.0288446	GLI1..3.p2	L27424|Timp3|21859|tissue inhibitor of metalloproteinase 3
mm9_v1_chr4_+_151852250_151852286	0.0287414	GLI1..3.p2	AF537131|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)	AK084539|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)	NM_153424|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)	AK016223|Nphp4|260305|nephronophthisis 4 (juvenile) homolog (human)
mm9_v1_chr2_+_156546694_156546736	0.0287336	GLI1..3.p2	NM_001042488|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr14_+_13116767_13116814	0.0287297	GLI1..3.p2	BC057656|3830406C13Rik|218734|RIKEN cDNA 3830406C13 gene
mm9_v1_chr11_+_74986061_74986062	0.0286024	GLI1..3.p2	AK006051|1700016P03Rik|668604|RIKEN cDNA 1700016P03 gene
mm9_v1_chr2_+_155102040_155102281	0.0284678	GLI1..3.p2	AK015020|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	NM_025735|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003122|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003716|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	BC010596|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha
mm9_v1_chr2_+_144096696_144096740	0.0284516	GLI1..3.p2	AK043140|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK018387|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene	AK167919|8430406I07Rik|74528|RIKEN cDNA 8430406I07 gene
mm9_v1_chr9_+_118961874_118961922	0.0284171	GLI1..3.p2	AK028229|Vill|22351|villin-like	AK166823|Vill|22351|villin-like	NM_001164567|Vill|22351|villin-like	NM_011700|Vill|22351|villin-like	AJ344341|Vill|22351|villin-like	BC021808|Vill|22351|villin-like
mm9_v1_chr9_+_37175190_37175276	0.0284119	GLI1..3.p2	AK013637|Hepacam|72927|hepatocyte cell adhesion molecule	NM_175189|Hepacam|72927|hepatocyte cell adhesion molecule	BC139057|Hepacam|72927|hepatocyte cell adhesion molecule	BC139058|Hepacam|72927|hepatocyte cell adhesion molecule	AK081154|Hepacam|72927|hepatocyte cell adhesion molecule	BC082537|Hepacam|72927|hepatocyte cell adhesion molecule
mm9_v1_chr1_-_193006986_193007136	0.0284069	GLI1..3.p2	AY329367|Atf3|11910|activating transcription factor 3	BC064799|Atf3|11910|activating transcription factor 3	U19118|Atf3|11910|activating transcription factor 3	AK156786|Atf3|11910|activating transcription factor 3
mm9_v1_chr17_-_13153538_13153631	0.0283896	GLI1..3.p2	BC004823|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	BC012496|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK037249|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK151751|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK167234|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	NM_009338|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2	AK166813|Acat2|110460|acetyl-Coenzyme A acetyltransferase 2
mm9_v1_chr5_-_92739036_92739049	0.0282814	GLI1..3.p2	AK029881|Sdad1|231452|SDA1 domain containing 1	NM_172713|Sdad1|231452|SDA1 domain containing 1
mm9_v1_chr16_+_38089086_38089192	0.0282387	GLI1..3.p2	AB066114|Gsk3b|56637|glycogen synthase kinase 3 beta	NM_019827|Gsk3b|56637|glycogen synthase kinase 3 beta	BC060743|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr14_+_55094936_55095066	0.0280527	GLI1..3.p2	AK090165|Rem2|140743|rad and gem related GTP binding protein 2	NM_080726|Rem2|140743|rad and gem related GTP binding protein 2	AK077317|Rem2|140743|rad and gem related GTP binding protein 2	BC018219|Rem2|140743|rad and gem related GTP binding protein 2
mm9_v1_chr5_-_34979119_34979250	0.028044	GLI1..3.p2	AK194014|Mfsd10|68294|major facilitator superfamily domain containing 10
mm9_v1_chr2_-_25052245_25052332	0.0280358	GLI1..3.p2	BC013092|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	AK155540|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	NM_146115|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene
mm9_v1_chr1_-_59293936_59294089	0.0279997	GLI1..3.p2	AK029858|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_001159948|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC046828|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC031479|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	AB053307|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_028717|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_146109|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)
mm9_v1_chr17_+_74888823_74888973	0.0279588	GLI1..3.p2	AK166347|Yipf4|67864|Yip1 domain family, member 4	AK009618|Yipf4|67864|Yip1 domain family, member 4	AK083301|Yipf4|67864|Yip1 domain family, member 4	NM_026417|Yipf4|67864|Yip1 domain family, member 4	AK017721|Yipf4|67864|Yip1 domain family, member 4	AK017722|Yipf4|67864|Yip1 domain family, member 4	AK159227|Yipf4|67864|Yip1 domain family, member 4	BC003936|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr13_-_85428957_85429102	0.0278589	GLI1..3.p2	NM_145452|Rasa1|218397|RAS p21 protein activator 1	AK046620|Rasa1|218397|RAS p21 protein activator 1
mm9_v1_chr11_-_120434181_120434192	0.0278316	GLI1..3.p2	AK168330|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK169265|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK170603|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK141304|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK146542|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK149605|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK149965|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK150422|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK150592|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK150805|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK151546|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK152141|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK152217|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK152791|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK152834|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK153365|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK159606|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK159729|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK159965|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK161537|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK167796|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK168612|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK168893|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	X06453|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide
mm9_v1_chr11_+_97702093_97702093	0.0278189	GLI1..3.p2	NM_001080935|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr8_+_106774774_106774855	0.0278116	GLI1..3.p2	AK005577|Cklf|75458|chemokine-like factor	AY046597|Cklf|75458|chemokine-like factor	NM_029295|Cklf|75458|chemokine-like factor	AK046397|Cklf|75458|chemokine-like factor	AK086063|Cklf|75458|chemokine-like factor	AK032759|Cklf|75458|chemokine-like factor	AK050112|Cklf|75458|chemokine-like factor	NM_001037841|Cklf|75458|chemokine-like factor	BC027684|Cklf|75458|chemokine-like factor	AF401530|Cklf|75458|chemokine-like factor	AF401531|Cklf|75458|chemokine-like factor	AY047360|Cklf|75458|chemokine-like factor
mm9_v1_chr5_+_98683202_98683430	0.0277566	GLI1..3.p2	AK028894|Fgf5|14176|fibroblast growth factor 5	NM_010203|Fgf5|14176|fibroblast growth factor 5	BC071227|Fgf5|14176|fibroblast growth factor 5	AK028694|Fgf5|14176|fibroblast growth factor 5	AB016516|Fgf5|14176|fibroblast growth factor 5	M30643|Fgf5|14176|fibroblast growth factor 5
mm9_v1_chr1_-_94044969_94044969	0.0276474	GLI1..3.p2	BC066052|Hdac4|208727|histone deacetylase 4	NM_207225|Hdac4|208727|histone deacetylase 4
mm9_v1_chr11_+_62389367_62389600	0.0275976	GLI1..3.p2	AK171222|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2	AK162841|Trpv2|22368|transient receptor potential cation channel, subfamily V, member 2
mm9_v1_chr11_+_72609717_72609729	0.0275067	GLI1..3.p2	AK158924|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1	NM_001045536|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1
mm9_v1_chr10_-_80204987_80205009	0.027473	GLI1..3.p2	AK155518|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr2_+_119500777_119500991	0.0273596	GLI1..3.p2	NM_030112|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC048535|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC022717|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC038032|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117848|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	BC117849|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)	AK177377|Rtf1|76246|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm9_v1_chr1_-_52874276_52874420	0.0272043	GLI1..3.p2	BC025072|Inpp1|16329|inositol polyphosphate-1-phosphatase	U27295|Inpp1|16329|inositol polyphosphate-1-phosphatase	AK078382|Inpp1|16329|inositol polyphosphate-1-phosphatase
mm9_v1_chr14_+_32842174_32842414	0.0269314	GLI1..3.p2	AK019470|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	BC133711|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	NM_030166|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	AK163883|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2
mm9_v1_chr10_+_39089853_39089891	0.0268734	GLI1..3.p2	M27266|Fyn|14360|Fyn proto-oncogene	U70324|Fyn|14360|Fyn proto-oncogene
mm9_v1_chr5_-_92497375_92497432	0.026857	GLI1..3.p2	AK200302|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr13_-_74487688_74487724	0.0268218	GLI1..3.p2	AK153085|Sdha|66945|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
mm9_v1_chr7_+_29236897_29237027	0.0267644	GLI1..3.p2	NM_030562|Lrfn1|80749|leucine rich repeat and fibronectin type III domain containing 1
mm9_v1_chr5_-_53060929_53060974	0.0267369	GLI1..3.p2	BC062133|Sepsecs|211006|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	AK033654|Sepsecs|211006|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	NM_172490|Sepsecs|211006|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	AK049338|Sepsecs|211006|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	AK153792|Sepsecs|211006|Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
mm9_v1_chr9_+_53619341_53619344	0.0267057	GLI1..3.p2	NM_028060|Slc35f2|72022|solute carrier family 35, member F2	BC055843|Slc35f2|72022|solute carrier family 35, member F2
mm9_v1_chr8_-_80960532_80960550	0.0266777	GLI1..3.p2	S68377|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK084240|Pou4f2|18997|POU domain, class 4, transcription factor 2	AK087546|Pou4f2|18997|POU domain, class 4, transcription factor 2	NM_138944|Pou4f2|18997|POU domain, class 4, transcription factor 2
mm9_v1_chrX_+_63902456_63902492	0.0266332	GLI1..3.p2	NM_001161431|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr5_+_138558132_138558268	0.0266283	GLI1..3.p2	NM_001044703|Zscan21|22697|zinc finger and SCAN domain containing 21	NM_001044704|Zscan21|22697|zinc finger and SCAN domain containing 21	NM_001044705|Zscan21|22697|zinc finger and SCAN domain containing 21	NM_011757|Zscan21|22697|zinc finger and SCAN domain containing 21	AK146776|Zscan21|22697|zinc finger and SCAN domain containing 21	AK146875|Zscan21|22697|zinc finger and SCAN domain containing 21	U41671|Zscan21|22697|zinc finger and SCAN domain containing 21	BC010591|Zscan21|22697|zinc finger and SCAN domain containing 21	D10630|Zscan21|22697|zinc finger and SCAN domain containing 21	X63747|Zscan21|22697|zinc finger and SCAN domain containing 21
mm9_v1_chr1_+_74648028_74648212	0.0266138	GLI1..3.p2	NM_175031|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK029842|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC043103|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK007188|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC049721|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC058698|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)
mm9_v1_chr11_+_102294276_102294332	0.0265482	GLI1..3.p2	BC037047|Grn|14824|granulin	X62321|Grn|14824|granulin	AK196399|Grn|14824|granulin	AK205747|Grn|14824|granulin
mm9_v1_chr2_-_38781939_38781980	0.0264374	GLI1..3.p2	U14666|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	NM_010264|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1	U09563|Nr6a1|14536|nuclear receptor subfamily 6, group A, member 1
mm9_v1_chr11_+_70027581_70027626	0.0263777	GLI1..3.p2	AB041591|Slc16a11|216867|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm9_v1_chr2_-_110203138_110203154	0.0263351	GLI1..3.p2	BC027250|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK003790|Fibin|67606|fin bud initiation factor homolog (zebrafish)	NM_026271|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr7_-_20408063_20408067	0.0261869	GLI1..3.p2	AF067774|Bcl3|12051|B-cell leukemia/lymphoma 3	AK155016|Bcl3|12051|B-cell leukemia/lymphoma 3
mm9_v1_chr5_+_145528973_145529079	0.0260975	GLI1..3.p2	
mm9_v1_chr2_-_32630849_32630902	0.0260892	GLI1..3.p2	BC140991|Ttc16|338348|tetratricopeptide repeat domain 16	BC145064|Ttc16|338348|tetratricopeptide repeat domain 16	AK028040|Ttc16|338348|tetratricopeptide repeat domain 16	AK160435|Ttc16|338348|tetratricopeptide repeat domain 16	NM_177384|Ttc16|338348|tetratricopeptide repeat domain 16
mm9_v1_chr7_+_29649404_29649463	0.0260451	GLI1..3.p2	NM_008496|Lgals7|16858|lectin, galactose binding, soluble 7	BC116838|Lgals7|16858|lectin, galactose binding, soluble 7	BC116840|Lgals7|16858|lectin, galactose binding, soluble 7
mm9_v1_chr11_-_120434204_120434302	0.0260135	GLI1..3.p2	AK150002|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	J05185|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	NM_011032|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide
mm9_v1_chrX_+_132806184_132806337	0.0259531	GLI1..3.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chrX_+_50265390_50265552	0.0257386	GLI1..3.p2	AK157045|Phf6|70998|PHD finger protein 6	AK012211|Phf6|70998|PHD finger protein 6	AK077803|Phf6|70998|PHD finger protein 6	AK163345|Phf6|70998|PHD finger protein 6	BC043127|Phf6|70998|PHD finger protein 6	NM_027642|Phf6|70998|PHD finger protein 6	AK141804|Phf6|70998|PHD finger protein 6	BC055330|Phf6|70998|PHD finger protein 6	AK122560|Phf6|70998|PHD finger protein 6	AK028498|Phf6|70998|PHD finger protein 6	AK038320|Phf6|70998|PHD finger protein 6	BC057374|Phf6|70998|PHD finger protein 6	AK192342|Phf6|70998|PHD finger protein 6	AK213676|Phf6|70998|PHD finger protein 6
mm9_v1_chrX_-_6952873_6952997	0.025716	GLI1..3.p2	BC137612|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	AK028249|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome	NM_019461|Usp27x|54651|ubiquitin specific peptidase 27, X chromosome
mm9_v1_chr2_-_177691943_177692036	0.0256678	GLI1..3.p2	BC042711|Gm14326|665211|predicted gene 14326	BC079554|Gm14326|665211|predicted gene 14326	NM_001190302|Gm14326|665211|predicted gene 14326
mm9_v1_chr4_-_102787201_102787227	0.0256024	GLI1..3.p2	AK078168|E030030F06Rik|320382|RIKEN cDNA E030030F06 gene	AK043370|E030030F06Rik|320382|RIKEN cDNA E030030F06 gene
mm9_v1_chr19_+_32670279_32670283	0.0255847	GLI1..3.p2	AK137675|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr11_+_16652205_16652516	0.0254793	GLI1..3.p2	AK004883|Egfr|13649|epidermal growth factor receptor	NM_007912|Egfr|13649|epidermal growth factor receptor	NM_207655|Egfr|13649|epidermal growth factor receptor	AK004944|Egfr|13649|epidermal growth factor receptor	AK004911|Egfr|13649|epidermal growth factor receptor	AK134262|Egfr|13649|epidermal growth factor receptor	AK014017|Egfr|13649|epidermal growth factor receptor	BC023729|Egfr|13649|epidermal growth factor receptor	AF124513|Egfr|13649|epidermal growth factor receptor	AF275367|Egfr|13649|epidermal growth factor receptor	X59698|Egfr|13649|epidermal growth factor receptor	AK049452|Egfr|13649|epidermal growth factor receptor	X78987|Egfr|13649|epidermal growth factor receptor	U03425|Egfr|13649|epidermal growth factor receptor	L06864|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr5_-_114221640_114221677	0.0254264	GLI1..3.p2	BC036350|Sart3|53890|squamous cell carcinoma antigen recognized by T-cells 3	BC057156|Sart3|53890|squamous cell carcinoma antigen recognized by T-cells 3	AF172722|Sart3|53890|squamous cell carcinoma antigen recognized by T-cells 3	AK086398|Sart3|53890|squamous cell carcinoma antigen recognized by T-cells 3	NM_016926|Sart3|53890|squamous cell carcinoma antigen recognized by T-cells 3	AK053828|Sart3|53890|squamous cell carcinoma antigen recognized by T-cells 3
mm9_v1_chr15_+_81065928_81066000	0.0253417	GLI1..3.p2	NM_145132|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr6_-_25639812_25639825	0.0249704	GLI1..3.p2	AK032525|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr9_-_100446444_100446539	0.0243675	GLI1..3.p2	BC002015|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1	NM_010878|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1	AK051854|Nck1|17973|non-catalytic region of tyrosine kinase adaptor protein 1
mm9_v1_chr7_-_119301920_119301970	0.0242748	GLI1..3.p2	BC050934|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	BC046304|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK013622|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK013054|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)
mm9_v1_chr11_-_73012493_73012562	0.0242562	GLI1..3.p2	BC005479|Ctns|83429|cystinosis, nephropathic	BC006033|Ctns|83429|cystinosis, nephropathic	AK079295|Ctns|83429|cystinosis, nephropathic	AK137143|Ctns|83429|cystinosis, nephropathic	NM_031251|Ctns|83429|cystinosis, nephropathic	AK078511|Ctns|83429|cystinosis, nephropathic	AK170790|Ctns|83429|cystinosis, nephropathic	AK054467|Ctns|83429|cystinosis, nephropathic	AK085517|Ctns|83429|cystinosis, nephropathic	AK170828|Ctns|83429|cystinosis, nephropathic
mm9_v1_chr16_-_38452584_38452644	0.0241411	GLI1..3.p2	AK079031|D930030I03Rik|320544|RIKEN cDNA D930030I03 gene
mm9_v1_chrX_-_99839480_99839617	0.0241407	GLI1..3.p2	X74616|Phka1|18679|phosphorylase kinase alpha 1	AK137497|Phka1|18679|phosphorylase kinase alpha 1	AK036440|Phka1|18679|phosphorylase kinase alpha 1	AK030426|Phka1|18679|phosphorylase kinase alpha 1	NM_008832|Phka1|18679|phosphorylase kinase alpha 1	NM_173021|Phka1|18679|phosphorylase kinase alpha 1
mm9_v1_chr13_+_54723144_54723248	0.024059	GLI1..3.p2	NM_178397|Faf2|76577|Fas associated factor family member 2	AK170111|Faf2|76577|Fas associated factor family member 2	AK171922|Faf2|76577|Fas associated factor family member 2	AK051724|Faf2|76577|Fas associated factor family member 2	BC046817|Faf2|76577|Fas associated factor family member 2	AK148529|Faf2|76577|Fas associated factor family member 2	AK151617|Faf2|76577|Fas associated factor family member 2	BC048767|Faf2|76577|Fas associated factor family member 2	AK122394|Faf2|76577|Fas associated factor family member 2
mm9_v1_chr5_-_150438704_150438747	0.0238893	GLI1..3.p2	D67016|Hsph1|15505|heat shock 105kDa/110kDa protein 1	AK083179|Hsph1|15505|heat shock 105kDa/110kDa protein 1
mm9_v1_chr13_-_95993020_95993098	0.023863	GLI1..3.p2	AK046298|Pde8b|218461|phosphodiesterase 8B
mm9_v1_chr18_+_61886043_61886108	0.0236936	GLI1..3.p2	AK005240|1500015A07Rik|68982|RIKEN cDNA 1500015A07 gene	AK133612|1500015A07Rik|68982|RIKEN cDNA 1500015A07 gene	BC038318|1500015A07Rik|68982|RIKEN cDNA 1500015A07 gene	BC047208|1500015A07Rik|68982|RIKEN cDNA 1500015A07 gene
mm9_v1_chr7_-_88060541_88060574	0.0236751	GLI1..3.p2	AK184425|Sec11a|56529|SEC11 homolog A (S. cerevisiae)
mm9_v1_chr11_-_51398152_51398172	0.0236245	GLI1..3.p2	
mm9_v1_chr2_+_127073631_127073743	0.0236244	GLI1..3.p2	AK165880|Tmem127|69470|transmembrane protein 127	AK030324|Tmem127|69470|transmembrane protein 127	BC049832|Tmem127|69470|transmembrane protein 127	NM_175145|Tmem127|69470|transmembrane protein 127	AK050216|Tmem127|69470|transmembrane protein 127
mm9_v1_chr15_+_103070840_103070935	0.0236201	GLI1..3.p2	AK131999|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK136113|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146630|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_001039129|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	NM_010447|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168531|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK135391|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK152684|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK161730|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166901|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167161|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167810|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167811|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168420|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK168733|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK169216|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK007802|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK088308|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK146126|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK166989|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167820|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	AK167913|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	M99167|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC052723|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC080675|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC092395|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC089340|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	BC083136|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86728|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1	D86729|Hnrnpa1|15382|heterogeneous nuclear ribonucleoprotein A1
mm9_v1_chr2_-_168487517_168487591	0.0235782	GLI1..3.p2	
mm9_v1_chr1_-_34899788_34899793	0.0235017	GLI1..3.p2	AK144298|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr5_+_121996013_121996031	0.0232844	GLI1..3.p2	
mm9_v1_chr15_+_101974616_101974616	0.0232609	GLI1..3.p2	NM_008344|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr11_-_94515067_94515072	0.0231979	GLI1..3.p2	AK078516|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)	NM_177752|Eme1|268465|essential meiotic endonuclease 1 homolog 1 (S. pombe)
mm9_v1_chr11_-_120673433_120673522	0.0231576	GLI1..3.p2	X13135|Fasn|14104|fatty acid synthase	BC059850|Fasn|14104|fatty acid synthase
mm9_v1_chr14_-_45938187_45938229	0.0229847	GLI1..3.p2	BC025102|Ero1l|50527|ERO1-like (S. cerevisiae)	NM_015774|Ero1l|50527|ERO1-like (S. cerevisiae)	AK159217|Ero1l|50527|ERO1-like (S. cerevisiae)
mm9_v1_chr5_+_139711487_139711530	0.022859	GLI1..3.p2	AK203786|Sun1|77053|Sad1 and UNC84 domain containing 1
mm9_v1_chr2_+_29725007_29725021	0.0228463	GLI1..3.p2	NM_207298|Cercam|99151|cerebral endothelial cell adhesion molecule	AK155384|Cercam|99151|cerebral endothelial cell adhesion molecule
mm9_v1_chr5_+_44210131_44210158	0.0227799	GLI1..3.p2	NM_009763|Bst1|12182|bone marrow stromal cell antigen 1	L32812|Bst1|12182|bone marrow stromal cell antigen 1	D31788|Bst1|12182|bone marrow stromal cell antigen 1	AK041059|Bst1|12182|bone marrow stromal cell antigen 1	BC033422|Bst1|12182|bone marrow stromal cell antigen 1
mm9_v1_chr14_+_47502637_47502773	0.0226873	GLI1..3.p2	NM_001037221|Samd4|74480|sterile alpha motif domain containing 4	NM_028966|Samd4|74480|sterile alpha motif domain containing 4	AK134243|Samd4|74480|sterile alpha motif domain containing 4	DQ278487|Samd4|74480|sterile alpha motif domain containing 4	AK133470|Samd4|74480|sterile alpha motif domain containing 4	BC145827|Samd4|74480|sterile alpha motif domain containing 4	BC145829|Samd4|74480|sterile alpha motif domain containing 4
mm9_v1_chrX_+_35542969_35543017	0.0226329	GLI1..3.p2	NM_001079513|Zbtb33|56805|zinc finger and BTB domain containing 33	NM_020256|Zbtb33|56805|zinc finger and BTB domain containing 33	AK087417|Zbtb33|56805|zinc finger and BTB domain containing 33	AK089423|Zbtb33|56805|zinc finger and BTB domain containing 33	AF097416|Zbtb33|56805|zinc finger and BTB domain containing 33
mm9_v1_chr3_-_95161071_95161127	0.0226327	GLI1..3.p2	AK135833|Setdb1|84505|SET domain, bifurcated 1	BC079537|Setdb1|84505|SET domain, bifurcated 1	AF091628|Setdb1|84505|SET domain, bifurcated 1	AF546078|Setdb1|84505|SET domain, bifurcated 1	AY091600|Setdb1|84505|SET domain, bifurcated 1	BC060173|Setdb1|84505|SET domain, bifurcated 1	AK132202|Setdb1|84505|SET domain, bifurcated 1	NM_001163641|Setdb1|84505|SET domain, bifurcated 1	NM_001163642|Setdb1|84505|SET domain, bifurcated 1	NM_018877|Setdb1|84505|SET domain, bifurcated 1
mm9_v1_chr7_+_28366447_28366590	0.0224588	GLI1..3.p2	
mm9_v1_chr8_+_128519001_128519113	0.0224406	GLI1..3.p2	NM_008430|Kcnk1|16525|potassium channel, subfamily K, member 1	AF033017|Kcnk1|16525|potassium channel, subfamily K, member 1	AK137224|Kcnk1|16525|potassium channel, subfamily K, member 1
mm9_v1_chr17_+_88382830_88382866	0.0223654	GLI1..3.p2	BC035274|Msh6|17688|mutS homolog 6 (E. coli)
mm9_v1_chr15_+_91503654_91503682	0.0222778	GLI1..3.p2	AK052591|Lrrk2|66725|leucine-rich repeat kinase 2	NM_025730|Lrrk2|66725|leucine-rich repeat kinase 2
mm9_v1_chr8_-_27056759_27056953	0.0220919	GLI1..3.p2	BC019450|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK189846|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK020410|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase
mm9_v1_chr9_-_102256709_102256791	0.0220366	GLI1..3.p2	AK036148|Ephb1|270190|Eph receptor B1
mm9_v1_chr8_-_73982014_73982139	0.0219392	GLI1..3.p2	AK185006|Abhd8|64296|abhydrolase domain containing 8	AK178673|Abhd8|64296|abhydrolase domain containing 8	AK179035|Abhd8|64296|abhydrolase domain containing 8	AK184390|Abhd8|64296|abhydrolase domain containing 8	AK187254|Abhd8|64296|abhydrolase domain containing 8	AK207815|Abhd8|64296|abhydrolase domain containing 8	AK209444|Abhd8|64296|abhydrolase domain containing 8	AK181691|Abhd8|64296|abhydrolase domain containing 8	AK185637|Abhd8|64296|abhydrolase domain containing 8	AK189463|Abhd8|64296|abhydrolase domain containing 8	AK181236|Abhd8|64296|abhydrolase domain containing 8
mm9_v1_chr8_+_108703001_108703015	0.0219064	GLI1..3.p2	BC038404|Slc7a6|330836|solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
mm9_v1_chr13_-_58227306_58227430	0.0218782	GLI1..3.p2	BC048746|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr5_+_21151760_21151873	0.0217554	GLI1..3.p2	BC058573|Armc10|67211|armadillo repeat containing 10	AK011303|Armc10|67211|armadillo repeat containing 10	NM_026034|Armc10|67211|armadillo repeat containing 10	AK009821|Armc10|67211|armadillo repeat containing 10	AK012872|Armc10|67211|armadillo repeat containing 10	BC046281|Armc10|67211|armadillo repeat containing 10	BC038487|Armc10|67211|armadillo repeat containing 10	BC027343|Armc10|67211|armadillo repeat containing 10
mm9_v1_chr15_+_25914120_25914196	0.0216336	GLI1..3.p2	AK031232|Zfp622|52521|zinc finger protein 622	AK170489|Zfp622|52521|zinc finger protein 622	NM_144523|Zfp622|52521|zinc finger protein 622	AK149106|Zfp622|52521|zinc finger protein 622	AK154951|Zfp622|52521|zinc finger protein 622
mm9_v1_chr8_+_35217633_35217673	0.0215423	GLI1..3.p2	BC022616|Tmem66|67887|transmembrane protein 66	AK093942|Tmem66|67887|transmembrane protein 66
mm9_v1_chr16_+_18877129_18877328	0.0215121	GLI1..3.p2	BC052856|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	BC060181|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr8_-_109417431_109417531	0.0213743	GLI1..3.p2	AK030924|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK165993|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	NM_145412|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK087721|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK088257|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)
mm9_v1_chr1_-_162142846_162143024	0.021365	GLI1..3.p2	U97327|Cacybp|12301|calcyclin binding protein	AK089043|Cacybp|12301|calcyclin binding protein	AK177869|Cacybp|12301|calcyclin binding protein	BC025948|Cacybp|12301|calcyclin binding protein	NM_009786|Cacybp|12301|calcyclin binding protein	AK013924|Cacybp|12301|calcyclin binding protein	AK145013|Cacybp|12301|calcyclin binding protein
mm9_v1_chr10_+_60638009_60638092	0.021296	GLI1..3.p2	AF257502|Tbata|65971|thymus, brain and testes associated	AF257503|Tbata|65971|thymus, brain and testes associated	AY243457|Tbata|65971|thymus, brain and testes associated	NM_001017407|Tbata|65971|thymus, brain and testes associated	NM_001017409|Tbata|65971|thymus, brain and testes associated	NM_023064|Tbata|65971|thymus, brain and testes associated	EU622858|Tbata|65971|thymus, brain and testes associated
mm9_v1_chr12_-_104116615_104116682	0.0212864	GLI1..3.p2	BC041669|Btbd7|238386|BTB (POZ) domain containing 7	NM_172806|Btbd7|238386|BTB (POZ) domain containing 7	AK134271|Btbd7|238386|BTB (POZ) domain containing 7	AK033160|Btbd7|238386|BTB (POZ) domain containing 7
mm9_v1_chr4_+_126803283_126803296	0.021133	GLI1..3.p2	AK160613|Gm12942|100039968|predicted gene 12942	NM_001099319|Gm12942|100039968|predicted gene 12942
mm9_v1_chr9_+_21807887_21807962	0.0210767	GLI1..3.p2	AK203731|Prkcsh|19089|protein kinase C substrate 80K-H
mm9_v1_chr18_-_35821788_35821845	0.0210543	GLI1..3.p2	BC060950|Spata24|71242|spermatogenesis associated 24	AK017218|Spata24|71242|spermatogenesis associated 24	AK016341|Spata24|71242|spermatogenesis associated 24	AK012241|Spata24|71242|spermatogenesis associated 24	AY730532|Spata24|71242|spermatogenesis associated 24	NM_027733|Spata24|71242|spermatogenesis associated 24	NM_029485|Spata24|71242|spermatogenesis associated 24
mm9_v1_chr5_+_136293975_136293975	0.0210041	GLI1..3.p2	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr11_-_106163120_106163178	0.0209822	GLI1..3.p2	AK019956|Gh|14599|growth hormone	AK019952|Gh|14599|growth hormone	AK019954|Gh|14599|growth hormone	AK019959|Gh|14599|growth hormone	AK019961|Gh|14599|growth hormone	AK030715|Gh|14599|growth hormone	BC061157|Gh|14599|growth hormone	NM_008117|Gh|14599|growth hormone	X02891|Gh|14599|growth hormone	AK030419|Gh|14599|growth hormone
mm9_v1_chr6_-_93628981_93629110	0.0208417	GLI1..3.p2	AF027505|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK081387|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr13_-_102453449_102453477	0.0207992	GLI1..3.p2	AK138868|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK049798|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chr7_+_148586221_148586268	0.0206525	GLI1..3.p2	U63159|Taldo1|21351|transaldolase 1
mm9_v1_chr9_+_110283518_110283612	0.0206275	GLI1..3.p2	
mm9_v1_chr8_+_35217674_35217675	0.0206065	GLI1..3.p2	BC013497|Tmem66|67887|transmembrane protein 66
mm9_v1_chr2_-_151458256_151458277	0.0205776	GLI1..3.p2	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr2_-_5816330_5816380	0.0205696	GLI1..3.p2	AF145254|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AF222748|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	BC005458|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK017615|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)	AK136447|Sec61a2|57743|Sec61, alpha subunit 2 (S. cerevisiae)
mm9_v1_chr5_+_23957994_23958094	0.0204467	GLI1..3.p2	AF459091|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	NM_139153|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	AB078345|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
mm9_v1_chr16_+_18498805_18498912	0.0202776	GLI1..3.p2	AK087954|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	NM_001081682|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AK016952|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AK171253|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	AF301595|Gnb1l|13972|guanine nucleotide binding protein (G protein), beta polypeptide 1-like
mm9_v1_chr13_+_42961598_42961632	0.0201001	GLI1..3.p2	AK139452|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr19_-_55173908_55173946	0.0198861	GLI1..3.p2	BC019201|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	NM_008149|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr8_-_87370656_87370769	0.0198569	GLI1..3.p2	EU639407|Calr|12317|calreticulin	BC003453|Calr|12317|calreticulin	AK136191|Calr|12317|calreticulin	AK160197|Calr|12317|calreticulin	M92988|Calr|12317|calreticulin	X14926|Calr|12317|calreticulin	AK075605|Calr|12317|calreticulin
mm9_v1_chr17_+_29839370_29839515	0.0198471	GLI1..3.p2	
mm9_v1_chr8_-_108489925_108490043	0.019789	GLI1..3.p2	AF047339|Slc12a4|20498|solute carrier family 12, member 4	NM_009195|Slc12a4|20498|solute carrier family 12, member 4	BC066872|Slc12a4|20498|solute carrier family 12, member 4	AK160034|Slc12a4|20498|solute carrier family 12, member 4	AK159483|Slc12a4|20498|solute carrier family 12, member 4	AK169044|Slc12a4|20498|solute carrier family 12, member 4	AK166304|Slc12a4|20498|solute carrier family 12, member 4	AK151717|Slc12a4|20498|solute carrier family 12, member 4	AK164479|Slc12a4|20498|solute carrier family 12, member 4	AK152762|Slc12a4|20498|solute carrier family 12, member 4	AK153245|Slc12a4|20498|solute carrier family 12, member 4	AK165874|Slc12a4|20498|solute carrier family 12, member 4	AK149969|Slc12a4|20498|solute carrier family 12, member 4	AK159331|Slc12a4|20498|solute carrier family 12, member 4	AK159537|Slc12a4|20498|solute carrier family 12, member 4	AK160072|Slc12a4|20498|solute carrier family 12, member 4	AK159274|Slc12a4|20498|solute carrier family 12, member 4	AF121118|Slc12a4|20498|solute carrier family 12, member 4	AK167371|Slc12a4|20498|solute carrier family 12, member 4	AK167444|Slc12a4|20498|solute carrier family 12, member 4
mm9_v1_chr12_+_25516433_25516564	0.0197512	GLI1..3.p2	NM_001083341|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	NM_026037|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK076045|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK012931|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031682|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK031824|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK033106|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK034873|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	BC025020|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AK215458|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB297383|Mboat2|67216|membrane bound O-acyltransferase domain containing 2	AB305046|Mboat2|67216|membrane bound O-acyltransferase domain containing 2
mm9_v1_chr9_+_108756367_108756465	0.0196064	GLI1..3.p2	AK080750|Slc26a6|171429|solute carrier family 26, member 6	AK163670|Slc26a6|171429|solute carrier family 26, member 6	AK163671|Slc26a6|171429|solute carrier family 26, member 6	NM_134420|Slc26a6|171429|solute carrier family 26, member 6	AK029238|Slc26a6|171429|solute carrier family 26, member 6	AK046993|Slc26a6|171429|solute carrier family 26, member 6	AK053088|Slc26a6|171429|solute carrier family 26, member 6	AY049076|Slc26a6|171429|solute carrier family 26, member 6
mm9_v1_chr10_+_90545834_90545844	0.019602	GLI1..3.p2	AK004670|Ikbip|67454|IKBKB interacting protein	BC055834|Ikbip|67454|IKBKB interacting protein
mm9_v1_chr18_+_67959756_67959787	0.0195883	GLI1..3.p2	AK052420|Cep192|70799|centrosomal protein 192	NM_027556|Cep192|70799|centrosomal protein 192	AK089253|Cep192|70799|centrosomal protein 192	AK158414|Cep192|70799|centrosomal protein 192
mm9_v1_chr1_+_173319048_173319419	0.0195586	GLI1..3.p2	AK147757|Arhgap30|226652|Rho GTPase activating protein 30	NM_001005508|Arhgap30|226652|Rho GTPase activating protein 30	AK156351|Arhgap30|226652|Rho GTPase activating protein 30	AK030911|Arhgap30|226652|Rho GTPase activating protein 30	BC082573|Arhgap30|226652|Rho GTPase activating protein 30	AK031319|Arhgap30|226652|Rho GTPase activating protein 30
mm9_v1_chr2_-_177575003_177575048	0.01945	GLI1..3.p2	BC092392|Gm14325|329575|predicted gene 14325	BC108403|Gm2004|100039000|predicted gene 2004	BC092391|Gm14325|329575|predicted gene 14325
mm9_v1_chr18_-_6490682_6490821	0.0193046	GLI1..3.p2	BC138622|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	BC138623|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)	AK010295|Epc1|13831|enhancer of polycomb homolog 1 (Drosophila)
mm9_v1_chr11_+_78156930_78157077	0.0190962	GLI1..3.p2	AF030169|Unc119|22248|unc-119 homolog (C. elegans)	AK131955|Unc119|22248|unc-119 homolog (C. elegans)	BC001990|Unc119|22248|unc-119 homolog (C. elegans)	NM_011676|Unc119|22248|unc-119 homolog (C. elegans)
mm9_v1_chr1_-_52874501_52874576	0.0189858	GLI1..3.p2	NM_008384|Inpp1|16329|inositol polyphosphate-1-phosphatase
mm9_v1_chr15_+_101904294_101904371	0.0189151	GLI1..3.p2	BC147746|Eif4b|75705|eukaryotic translation initiation factor 4B	BC147748|Eif4b|75705|eukaryotic translation initiation factor 4B	AK077423|Eif4b|75705|eukaryotic translation initiation factor 4B	AK170256|Eif4b|75705|eukaryotic translation initiation factor 4B	AK148012|Eif4b|75705|eukaryotic translation initiation factor 4B	AK163266|Eif4b|75705|eukaryotic translation initiation factor 4B	AK166363|Eif4b|75705|eukaryotic translation initiation factor 4B	AK168425|Eif4b|75705|eukaryotic translation initiation factor 4B	AK168350|Eif4b|75705|eukaryotic translation initiation factor 4B	AK045250|Eif4b|75705|eukaryotic translation initiation factor 4B	BC036293|Eif4b|75705|eukaryotic translation initiation factor 4B	AK161693|Eif4b|75705|eukaryotic translation initiation factor 4B	AK170354|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr11_-_116704485_116704688	0.0188789	GLI1..3.p2	EF527405|Jmjd6|107817|jumonji domain containing 6	BC006067|Jmjd6|107817|jumonji domain containing 6	BC011503|Jmjd6|107817|jumonji domain containing 6	AK122317|Jmjd6|107817|jumonji domain containing 6	AF304118|Jmjd6|107817|jumonji domain containing 6
mm9_v1_chr7_+_29767872_29767891	0.0188604	GLI1..3.p2	NM_008279|Map4k1|26411|mitogen-activated protein kinase kinase kinase kinase 1	AK146273|Map4k1|26411|mitogen-activated protein kinase kinase kinase kinase 1	BC005433|Map4k1|26411|mitogen-activated protein kinase kinase kinase kinase 1
mm9_v1_chrX_+_7367116_7367152	0.0188402	GLI1..3.p2	AK156165|Gripap1|54645|GRIP1 associated protein 1	AK172623|Gripap1|54645|GRIP1 associated protein 1	AK172699|Gripap1|54645|GRIP1 associated protein 1	AK172590|Gripap1|54645|GRIP1 associated protein 1	NM_207670|Gripap1|54645|GRIP1 associated protein 1	BC138523|Gripap1|54645|GRIP1 associated protein 1	BC145310|Gripap1|54645|GRIP1 associated protein 1	AK158098|Gripap1|54645|GRIP1 associated protein 1	X97571|Gripap1|54645|GRIP1 associated protein 1
mm9_v1_chr7_-_87245668_87245779	0.0186176	GLI1..3.p2	AK181957|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial	AK212860|Idh2|269951|isocitrate dehydrogenase 2 (NADP+), mitochondrial
mm9_v1_chr12_+_17273358_17273435	0.0185888	GLI1..3.p2	AK167386|Pdia6|71853|protein disulfide isomerase associated 6	AK152960|Pdia6|71853|protein disulfide isomerase associated 6	AK005989|Pdia6|71853|protein disulfide isomerase associated 6	AK133792|Pdia6|71853|protein disulfide isomerase associated 6	AK166111|Pdia6|71853|protein disulfide isomerase associated 6	AK168136|Pdia6|71853|protein disulfide isomerase associated 6	AK168279|Pdia6|71853|protein disulfide isomerase associated 6	AK076558|Pdia6|71853|protein disulfide isomerase associated 6	NM_027959|Pdia6|71853|protein disulfide isomerase associated 6	BC006865|Pdia6|71853|protein disulfide isomerase associated 6	AK151008|Pdia6|71853|protein disulfide isomerase associated 6	AK165877|Pdia6|71853|protein disulfide isomerase associated 6
mm9_v1_chr1_+_75143987_75144074	0.0183859	GLI1..3.p2	AK218799|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr12_+_103366928_103366945	0.0182965	GLI1..3.p2	AK044368|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	AK044239|Slc24a4|238384|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm9_v1_chr6_+_88052091_88052141	0.0182551	GLI1..3.p2	
mm9_v1_chr7_+_151009071_151009071	0.018244	GLI1..3.p2	AJ307059|Dhcr7|13360|7-dehydrocholesterol reductase	NM_007856|Dhcr7|13360|7-dehydrocholesterol reductase
mm9_v1_chr11_-_102178559_102178600	0.0182249	GLI1..3.p2	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr8_+_47249009_47249101	0.0181949	GLI1..3.p2	AK048125|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK129358|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK082519|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	BC049135|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK020894|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK020776|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene	AK016776|4933411K20Rik|66756|RIKEN cDNA 4933411K20 gene
mm9_v1_chr17_+_75404893_75404907	0.0180467	GLI1..3.p2	AF022889|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chrX_+_71550669_71550710	0.0178592	GLI1..3.p2	BC013758|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AF251042|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK209882|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK179895|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK205324|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK206024|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK206073|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr10_-_52058305_52058381	0.0178234	GLI1..3.p2	AK008806|Gopc|94221|golgi associated PDZ and coiled-coil motif containing
mm9_v1_chr18_+_62339779_62339836	0.0177543	GLI1..3.p2	AK042188|Gm9949|225609|predicted gene 9949
mm9_v1_chr7_-_134339388_134339535	0.0176964	GLI1..3.p2	AK167249|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK030393|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	BC079575|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK154346|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK010582|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	BC006920|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK031694|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK034689|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	NM_027353|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2
mm9_v1_chr18_-_84758848_84758918	0.0176742	GLI1..3.p2	AK032536|Zfp407|240476|zinc finger protein 407	NM_001033341|Zfp407|240476|zinc finger protein 407
mm9_v1_chr5_-_137974398_137974535	0.0176355	GLI1..3.p2	BC062178|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK002604|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK151628|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	NM_010312|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	Y11970|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	AK146941|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2
mm9_v1_chr4_+_154624156_154624175	0.0175816	GLI1..3.p2	BC048854|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene
mm9_v1_chr5_+_125956221_125956249	0.0175465	GLI1..3.p2	AK019063|Aacs|78894|acetoacetyl-CoA synthetase	AK044017|Aacs|78894|acetoacetyl-CoA synthetase	AK147189|Aacs|78894|acetoacetyl-CoA synthetase	AK150266|Aacs|78894|acetoacetyl-CoA synthetase	AK165418|Aacs|78894|acetoacetyl-CoA synthetase	AK165457|Aacs|78894|acetoacetyl-CoA synthetase	AK170120|Aacs|78894|acetoacetyl-CoA synthetase	AK170653|Aacs|78894|acetoacetyl-CoA synthetase	AK170856|Aacs|78894|acetoacetyl-CoA synthetase	NM_030210|Aacs|78894|acetoacetyl-CoA synthetase
mm9_v1_chr17_-_26005680_26005704	0.0175264	GLI1..3.p2	AK020614|Fam195a|68241|family with sequence similarity 195, member A	AK003564|Fam195a|68241|family with sequence similarity 195, member A	NM_026633|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr11_+_62416376_62416390	0.0174982	GLI1..3.p2	AK010427|2410006H16Rik|69221|RIKEN cDNA 2410006H16 gene	AK157519|2410006H16Rik|69221|RIKEN cDNA 2410006H16 gene
mm9_v1_chr4_+_154624074_154624074	0.0173981	GLI1..3.p2	AK011291|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene	NM_001190445|2610002J02Rik|67513|RIKEN cDNA 2610002J02 gene
mm9_v1_chr8_+_4253079_4253141	0.0173616	GLI1..3.p2	AK075569|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2	AK035340|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2	AK155012|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2	AK004379|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2	AK141475|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2	BC011147|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2	NM_133968|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2	AK146218|Snapc2|102209|small nuclear RNA activating complex, polypeptide 2
mm9_v1_chr19_-_5424473_5424593	0.0172386	GLI1..3.p2	AK005445|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr15_-_79435423_79435538	0.0170167	GLI1..3.p2	BC116767|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	BC119081|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	D64107|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	NM_010059|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	D58419|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	AK076777|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)	AK169570|Dmc1|13404|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)
mm9_v1_chr9_-_100935259_100935321	0.0169442	GLI1..3.p2	BC026531|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AF327060|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	BC037082|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	BC055946|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AK050366|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AK004976|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	NM_025835|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide	AK134437|Pccb|66904|propionyl Coenzyme A carboxylase, beta polypeptide
mm9_v1_chr11_-_120685418_120685622	0.0169087	GLI1..3.p2	AK171499|Fasn|14104|fatty acid synthase	AK147214|Fasn|14104|fatty acid synthase	AK147694|Fasn|14104|fatty acid synthase
mm9_v1_chr5_+_109058788_109058836	0.0167662	GLI1..3.p2	AK049952|Tmem175|72392|transmembrane protein 175	NM_001163531|Tmem175|72392|transmembrane protein 175	NM_001163532|Tmem175|72392|transmembrane protein 175	NM_028223|Tmem175|72392|transmembrane protein 175
mm9_v1_chr6_+_71493841_71493983	0.016744	GLI1..3.p2	AK083562|Vps24|66700|vacuolar protein sorting 24 (yeast)	NM_025783|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK018611|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK014818|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK016677|Vps24|66700|vacuolar protein sorting 24 (yeast)	BC049964|Vps24|66700|vacuolar protein sorting 24 (yeast)	AK009414|Vps24|66700|vacuolar protein sorting 24 (yeast)	BC027441|Vps24|66700|vacuolar protein sorting 24 (yeast)	BC039759|Vps24|66700|vacuolar protein sorting 24 (yeast)
mm9_v1_chr4_-_40895298_40895348	0.0166617	GLI1..3.p2	NM_001171739|Bag1|12017|BCL2-associated athanogene 1	NM_009736|Bag1|12017|BCL2-associated athanogene 1
mm9_v1_chr2_+_104657018_104657084	0.0166467	GLI1..3.p2	AK009882|2310047K21Rik|71928|RIKEN cDNA 2310047K21 gene
mm9_v1_chr11_-_70460333_70460538	0.0165048	GLI1..3.p2	AK186207|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK009824|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK168951|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK009487|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	BC019631|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	NM_024211|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	BC003455|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
mm9_v1_chr2_+_166631011_166631132	0.016503	GLI1..3.p2	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chrX_+_150158113_150158178	0.0163941	GLI1..3.p2	AK008724|2210013O21Rik|70123|RIKEN cDNA 2210013O21 gene
mm9_v1_chr11_+_115761444_115761621	0.01625	GLI1..3.p2	NM_183259|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK020450|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK004370|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	BC065414|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene
mm9_v1_chr6_+_72499398_72499477	0.0162363	GLI1..3.p2	AK146622|Capg|12332|capping protein (actin filament), gelsolin-like	AK152818|Capg|12332|capping protein (actin filament), gelsolin-like	NM_001042534|Capg|12332|capping protein (actin filament), gelsolin-like	BC003480|Capg|12332|capping protein (actin filament), gelsolin-like	AK149857|Capg|12332|capping protein (actin filament), gelsolin-like	BC023101|Capg|12332|capping protein (actin filament), gelsolin-like
mm9_v1_chr8_+_34842304_34842440	0.0162356	GLI1..3.p2	AK158783|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	NM_001167921|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	AK150415|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)	AK153370|Gtf2e2|68153|general transcription factor II E, polypeptide 2 (beta subunit)
mm9_v1_chr2_-_127073455_127073460	0.0161871	GLI1..3.p2	BC004089|Ciao1|26371|cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)
mm9_v1_chr7_+_51697856_51697856	0.0160939	GLI1..3.p2	BC060263|Lrrc4b|272381|leucine rich repeat containing 4B	NM_198250|Lrrc4b|272381|leucine rich repeat containing 4B
mm9_v1_chr8_-_122129081_122129139	0.0160922	GLI1..3.p2	BC058383|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK156718|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK030522|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK052250|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	BC051944|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK154846|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	AK087534|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C	NM_021441|Taf1c|21341|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, C
mm9_v1_chr12_+_114047124_114047205	0.0157271	GLI1..3.p2	AK161400|BC022687|217887|cDNA sequence BC022687	AK081297|BC022687|217887|cDNA sequence BC022687	BC090976|BC022687|217887|cDNA sequence BC022687	NM_145450|BC022687|217887|cDNA sequence BC022687
mm9_v1_chr1_+_169287454_169287527	0.015622	GLI1..3.p2	AK179746|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK180861|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK184027|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK188805|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK199575|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK203750|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK211951|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1
mm9_v1_chr12_+_71554087_71554153	0.0155567	GLI1..3.p2	AK030429|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK170468|Tmx1|72736|thioredoxin-related transmembrane protein 1	BC021533|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK150511|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK153027|Tmx1|72736|thioredoxin-related transmembrane protein 1	BC017603|Tmx1|72736|thioredoxin-related transmembrane protein 1	NM_028339|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK050567|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK013150|Tmx1|72736|thioredoxin-related transmembrane protein 1	AK137059|Tmx1|72736|thioredoxin-related transmembrane protein 1
mm9_v1_chr11_-_84683533_84683681	0.0152702	GLI1..3.p2	BC145605|Ggnbp2|217039|gametogenetin binding protein 2	BC150801|Ggnbp2|217039|gametogenetin binding protein 2	BC139772|Ggnbp2|217039|gametogenetin binding protein 2	BC060738|Ggnbp2|217039|gametogenetin binding protein 2
mm9_v1_chr11_-_6100141_6100160	0.0152465	GLI1..3.p2	BC037090|Nudcd3|209586|NudC domain containing 3	AK050476|Nudcd3|209586|NudC domain containing 3	EU350933|Nudcd3|209586|NudC domain containing 3	AK036694|Nudcd3|209586|NudC domain containing 3
mm9_v1_chr11_+_98671008_98671098	0.0151909	GLI1..3.p2	BC141296|Casc3|192160|cancer susceptibility candidate 3	AK139608|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr17_-_71948041_71948067	0.0150051	GLI1..3.p2	AK045842|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)
mm9_v1_chr11_-_119966955_119966991	0.0149913	GLI1..3.p2	AK194453|Slc38a10|72055|solute carrier family 38, member 10	BC023375|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr16_+_10488270_10488391	0.0147788	GLI1..3.p2	AK040723|Ciita|12265|class II transactivator	AK155184|Ciita|12265|class II transactivator	AF042158|Ciita|12265|class II transactivator	AK153609|Ciita|12265|class II transactivator	NM_007575|Ciita|12265|class II transactivator	U60653|Ciita|12265|class II transactivator	BC107330|Ciita|12265|class II transactivator	BC107331|Ciita|12265|class II transactivator
mm9_v1_chr15_-_79158683_79158800	0.014775	GLI1..3.p2	NM_001199023|Pla2g6|53357|phospholipase A2, group VI	NM_001199024|Pla2g6|53357|phospholipase A2, group VI	NM_001199025|Pla2g6|53357|phospholipase A2, group VI	NM_016915|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr19_+_5695494_5695518	0.0146443	GLI1..3.p2	
mm9_v1_chr11_+_70467599_70467631	0.0145284	GLI1..3.p2	AK131636|Pfn1|18643|profilin 1
mm9_v1_chr10_+_70810540_70810588	0.0145133	GLI1..3.p2	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr10_-_61441817_61441832	0.0144567	GLI1..3.p2	BC034164|Col13a1|12817|collagen, type XIII, alpha 1
mm9_v1_chr15_-_57907967_57908070	0.0144405	GLI1..3.p2	AK220508|Zhx1|22770|zinc fingers and homeoboxes 1	NM_001042438|Zhx1|22770|zinc fingers and homeoboxes 1	NM_009572|Zhx1|22770|zinc fingers and homeoboxes 1	AK051410|Zhx1|22770|zinc fingers and homeoboxes 1
mm9_v1_chr1_-_80210403_80210518	0.0142617	GLI1..3.p2	BC150872|Fam124b|241128|family with sequence similarity 124, member B	AK043867|Fam124b|241128|family with sequence similarity 124, member B	NM_173425|Fam124b|241128|family with sequence similarity 124, member B
mm9_v1_chr17_+_25864702_25864739	0.0142467	GLI1..3.p2	BC018186|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr3_-_8953712_8953799	0.0142183	GLI1..3.p2	
mm9_v1_chr7_-_70357361_70357454	0.014055	GLI1..3.p2	AY574266|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AF225980|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK157809|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	L37663|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	NM_007390|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK034208|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7
mm9_v1_chr12_-_119539840_119539861	0.0139726	GLI1..3.p2	U62522|Sp4|20688|trans-acting transcription factor 4	BC076630|Sp4|20688|trans-acting transcription factor 4
mm9_v1_chr7_+_5046759_5046788	0.0139222	GLI1..3.p2	
mm9_v1_chr7_+_148633501_148633587	0.0138569	GLI1..3.p2	AK008344|Rplp2|67186|ribosomal protein, large P2	AK010618|Rplp2|67186|ribosomal protein, large P2	AK012526|Rplp2|67186|ribosomal protein, large P2	NM_026020|Rplp2|67186|ribosomal protein, large P2	AK088737|Rplp2|67186|ribosomal protein, large P2	AK134206|Rplp2|67186|ribosomal protein, large P2	AK028140|Rplp2|67186|ribosomal protein, large P2	AK028149|Rplp2|67186|ribosomal protein, large P2	AK012402|Rplp2|67186|ribosomal protein, large P2	BC012413|Rplp2|67186|ribosomal protein, large P2	AK002419|Rplp2|67186|ribosomal protein, large P2	AK166774|Rplp2|67186|ribosomal protein, large P2
mm9_v1_chr12_-_21379292_21379460	0.0137932	GLI1..3.p2	AJ007365|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC114999|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69613|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138416|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC138420|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC145270|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC026052|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149288|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK139471|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC048792|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK137693|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK149614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK165739|Adam17|11491|a disintegrin and metallopeptidase domain 17	BC094655|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK144161|Adam17|11491|a disintegrin and metallopeptidase domain 17	U69614|Adam17|11491|a disintegrin and metallopeptidase domain 17	AK142441|Adam17|11491|a disintegrin and metallopeptidase domain 17	NM_009615|Adam17|11491|a disintegrin and metallopeptidase domain 17	AB021709|Adam17|11491|a disintegrin and metallopeptidase domain 17
mm9_v1_chr19_+_5568045_5568150	0.0137928	GLI1..3.p2	AK144121|Gm962|381201|predicted gene 962	NM_001033448|Gm962|381201|predicted gene 962	BC147482|Gm962|381201|predicted gene 962
mm9_v1_chr4_+_140528820_140528899	0.0137853	GLI1..3.p2	AF095936|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	AK190493|Sdhb|67680|succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
mm9_v1_chr7_-_20169533_20169553	0.0136856	GLI1..3.p2	
mm9_v1_chr9_-_106691395_106691543	0.0136063	GLI1..3.p2	BC133714|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK155151|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK090250|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	AK083903|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)	NM_030730|Rad54l2|81000|RAD54 like 2 (S. cerevisiae)
mm9_v1_chr19_-_44144244_44144286	0.0135788	GLI1..3.p2	AK145990|Erlin1|226144|ER lipid raft associated 1	NM_001164359|Erlin1|226144|ER lipid raft associated 1	NM_001164360|Erlin1|226144|ER lipid raft associated 1
mm9_v1_chr1_-_72747112_72747152	0.0135042	GLI1..3.p2	BC132415|Ankar|319695|ankyrin and armadillo repeat containing	BC145253|Ankar|319695|ankyrin and armadillo repeat containing	AK030065|Ankar|319695|ankyrin and armadillo repeat containing	NM_176980|Ankar|319695|ankyrin and armadillo repeat containing	AK077036|Ankar|319695|ankyrin and armadillo repeat containing
mm9_v1_chr11_+_29641691_29641734	0.013454	GLI1..3.p2	AK003859|Rtn4|68585|reticulon 4
mm9_v1_chr17_+_29751754_29752001	0.0133511	GLI1..3.p2	AK147168|Rnf8|58230|ring finger protein 8	BC021778|Rnf8|58230|ring finger protein 8	NM_021419|Rnf8|58230|ring finger protein 8	AK076180|Rnf8|58230|ring finger protein 8	CT010295|Rnf8|58230|ring finger protein 8	AK219887|Rnf8|58230|ring finger protein 8
mm9_v1_chr17_+_8118823_8118919	0.0133362	GLI1..3.p2	NM_145968|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC030886|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC039780|Tagap|72536|T-cell activation Rho GTPase-activating protein	BC150728|Tagap|72536|T-cell activation Rho GTPase-activating protein
mm9_v1_chr2_-_37298623_37298690	0.0133115	GLI1..3.p2	BC109349|Zbtb26|320633|zinc finger and BTB domain containing 26	BC109350|Zbtb26|320633|zinc finger and BTB domain containing 26	AK044592|Zbtb26|320633|zinc finger and BTB domain containing 26	BC060655|Zbtb26|320633|zinc finger and BTB domain containing 26	NM_199025|Zbtb26|320633|zinc finger and BTB domain containing 26	AK166126|Zbtb26|320633|zinc finger and BTB domain containing 26
mm9_v1_chr9_-_45714921_45714956	0.0131686	GLI1..3.p2	AK028768|Rnf214|235315|ring finger protein 214	AK046190|Rnf214|235315|ring finger protein 214	BC049909|Rnf214|235315|ring finger protein 214
mm9_v1_chr11_-_108204983_108205101	0.0131264	GLI1..3.p2	BC096493|Prkca|18750|protein kinase C, alpha
mm9_v1_chr19_+_8876985_8877044	0.0130484	GLI1..3.p2	AK142256|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_133759|Zbtb3|75291|zinc finger and BTB domain containing 3	AK049258|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119186|Zbtb3|75291|zinc finger and BTB domain containing 3	BC119188|Zbtb3|75291|zinc finger and BTB domain containing 3	NM_001098237|Zbtb3|75291|zinc finger and BTB domain containing 3	BC012410|Zbtb3|75291|zinc finger and BTB domain containing 3
mm9_v1_chr8_-_125201971_125202083	0.013042	GLI1..3.p2	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr19_-_5843912_5843983	0.0130258	GLI1..3.p2	
mm9_v1_chr4_+_11631592_11631656	0.013003	GLI1..3.p2	AK157655|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	AK158393|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	AK168401|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	NM_010276|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	AK153999|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	AK169699|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	U13053|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	BC029668|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)	AK171336|Gem|14579|GTP binding protein (gene overexpressed in skeletal muscle)
mm9_v1_chr11_-_3309227_3309253	0.012901	GLI1..3.p2	NM_010718|Limk2|16886|LIM motif-containing protein kinase 2
mm9_v1_chr6_+_60894310_60894310	0.0128759	GLI1..3.p2	NM_001163507|Mmrn1|70945|multimerin 1	NM_027613|Mmrn1|70945|multimerin 1
mm9_v1_chr11_-_48927255_48927258	0.0128323	GLI1..3.p2	BC110470|Olfr1396|258334|olfactory receptor 1396	BC110471|Olfr1396|258334|olfactory receptor 1396	NM_146337|Olfr1396|258334|olfactory receptor 1396
mm9_v1_chr8_-_90483124_90483239	0.0128268	GLI1..3.p2	BC079586|Zfp423|94187|zinc finger protein 423	BC139028|Zfp423|94187|zinc finger protein 423	BC139030|Zfp423|94187|zinc finger protein 423
mm9_v1_chr11_-_98671371_98671404	0.0124729	GLI1..3.p2	AK087290|Gm12359|100037262|predicted gene 12359	AK142978|Gm12359|100037262|predicted gene 12359
mm9_v1_chr3_-_144382959_144383365	0.0124598	GLI1..3.p2	AK029647|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK158415|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK011371|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK004590|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	BC024362|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK172959|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK146246|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF263364|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF272946|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	DQ205686|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	NM_019464|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr7_+_50834955_50835126	0.0124588	GLI1..3.p2	NM_172482|Zfp719|210105|zinc finger protein 719	AK044684|Zfp719|210105|zinc finger protein 719	BC081548|Zfp719|210105|zinc finger protein 719	AK083143|Zfp719|210105|zinc finger protein 719	AK020523|Zfp719|210105|zinc finger protein 719
mm9_v1_chr4_-_137923869_137923874	0.0124076	GLI1..3.p2	BC050114|Cda|72269|cytidine deaminase	NM_028176|Cda|72269|cytidine deaminase	AK008793|Cda|72269|cytidine deaminase
mm9_v1_chr7_-_52230117_52230178	0.0124009	GLI1..3.p2	AF320000|Cpt1c|78070|carnitine palmitoyltransferase 1c	NM_153679|Cpt1c|78070|carnitine palmitoyltransferase 1c	BC066155|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr12_-_82046368_82046382	0.0123663	GLI1..3.p2	AK145430|LOC100504661|100504661|hypothetical LOC100504661
mm9_v1_chr2_+_155212610_155212626	0.0123169	GLI1..3.p2	AK190675|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr2_-_93997994_93998073	0.0122722	GLI1..3.p2	BC037620|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	BC090659|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	BC010749|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AF064635|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK076088|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK150849|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK152489|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK166027|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK081869|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK082715|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK088521|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK167908|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	AK078841|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12	NM_019657|Hsd17b12|56348|hydroxysteroid (17-beta) dehydrogenase 12
mm9_v1_chr5_-_122043478_122043552	0.0120996	GLI1..3.p2	AK128913|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial
mm9_v1_chr8_-_114154217_114154279	0.0120481	GLI1..3.p2	BC039155|Ldhd|52815|lactate dehydrogenase D	AY092768|Ldhd|52815|lactate dehydrogenase D	BC055443|Ldhd|52815|lactate dehydrogenase D	NM_027570|Ldhd|52815|lactate dehydrogenase D	AK029820|Ldhd|52815|lactate dehydrogenase D	AK014649|Ldhd|52815|lactate dehydrogenase D
mm9_v1_chr1_+_34347244_34347312	0.0119687	GLI1..3.p2	AK037206|Dst|13518|dystonin
mm9_v1_chr7_-_133929571_133929602	0.0119014	GLI1..3.p2	AK211564|Ppp4c|56420|protein phosphatase 4, catalytic subunit
mm9_v1_chr6_+_116288396_116288456	0.0117725	GLI1..3.p2	AK005032|March8|71779|membrane-associated ring finger (C3HC4) 8	AK182250|March8|71779|membrane-associated ring finger (C3HC4) 8	AK189694|March8|71779|membrane-associated ring finger (C3HC4) 8
mm9_v1_chr5_+_149114763_149114791	0.0117382	GLI1..3.p2	AK019985|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr2_-_92224258_92224292	0.0116406	GLI1..3.p2	
mm9_v1_chr9_-_89633312_89633312	0.0116201	GLI1..3.p2	AK045652|Ankrd34c|330998|ankyrin repeat domain 34C	NM_207260|Ankrd34c|330998|ankyrin repeat domain 34C
mm9_v1_chr17_-_14831058_14831092	0.0116111	GLI1..3.p2	BC053702|Thbs2|21826|thrombospondin 2
mm9_v1_chr13_+_51245730_51245816	0.0116032	GLI1..3.p2	
mm9_v1_chr1_-_135557925_135557932	0.0114963	GLI1..3.p2	BC066163|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr11_-_121084021_121084125	0.011496	GLI1..3.p2	AK215969|BC017643|217370|cDNA sequence BC017643
mm9_v1_chr7_+_31092787_31092817	0.0114381	GLI1..3.p2	BC058124|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr8_-_108089811_108089973	0.0114312	GLI1..3.p2	U21549|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AB088408|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	U13840|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	BC011075|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK171515|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK083372|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	NM_013477|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1	AK133921|Atp6v0d1|11972|ATPase, H+ transporting, lysosomal V0 subunit D1
mm9_v1_chr1_-_173210278_173210420	0.0112881	GLI1..3.p2	AK188765|Ppox|19044|protoporphyrinogen oxidase
mm9_v1_chr12_-_70825804_70825839	0.0112246	GLI1..3.p2	BC016226|L2hgdh|217666|L-2-hydroxyglutarate dehydrogenase	AK168429|L2hgdh|217666|L-2-hydroxyglutarate dehydrogenase	AK152450|L2hgdh|217666|L-2-hydroxyglutarate dehydrogenase
mm9_v1_chr8_+_125641197_125641276	0.0111495	GLI1..3.p2	AK162900|Cpne7|102278|copine VII	NM_170684|Cpne7|102278|copine VII
mm9_v1_chr17_+_35373506_35373704	0.0111485	GLI1..3.p2	NM_023179|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC020190|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC062380|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	AK005109|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	BC049587|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2	AK011945|Atp6v1g2|66237|ATPase, H+ transporting, lysosomal V1 subunit G2
mm9_v1_chr17_-_36035368_36035398	0.0111152	GLI1..3.p2	AK177921|Atat1|73242|alpha tubulin acetyltransferase 1
mm9_v1_chr13_+_34129449_34129529	0.0111094	GLI1..3.p2	AK078232|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK008202|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK152712|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK017801|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK170099|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	BC025162|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	NM_026512|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK002907|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	AK007606|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	BC023146|Bphl|68021|biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
mm9_v1_chr4_+_149022081_149022141	0.0108296	GLI1..3.p2	AK007691|Clstn1|65945|calsyntenin 1
mm9_v1_chr1_-_135557934_135557977	0.010739	GLI1..3.p2	AK148376|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK078105|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK145740|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK167700|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK041148|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK017663|Zc3h11a|70579|zinc finger CCCH type containing 11A	AK035705|Zbed6|667118|zinc finger, BED domain containing 6	NM_144530|Zc3h11a|70579|zinc finger CCCH type containing 11A
mm9_v1_chr8_+_73429830_73429980	0.0106401	GLI1..3.p2	BC150729|Mtap1s|270058|microtubule-associated protein 1S	NM_173013|Mtap1s|270058|microtubule-associated protein 1S	AK082854|Mtap1s|270058|microtubule-associated protein 1S	AK042159|Mtap1s|270058|microtubule-associated protein 1S	AK032300|Mtap1s|270058|microtubule-associated protein 1S	DQ387862|Mtap1s|270058|microtubule-associated protein 1S	BC058166|Mtap1s|270058|microtubule-associated protein 1S	BC079598|Mtap1s|270058|microtubule-associated protein 1S
mm9_v1_chr9_-_85220730_85220905	0.0105972	GLI1..3.p2	NM_001160378|Fam46a|212943|family with sequence similarity 46, member A	AK135132|Fam46a|212943|family with sequence similarity 46, member A	NM_001160379|Fam46a|212943|family with sequence similarity 46, member A
mm9_v1_chr11_-_88579517_88579542	0.0105379	GLI1..3.p2	AK156439|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049637|Msi2|76626|Musashi homolog 2 (Drosophila)	AK049688|Msi2|76626|Musashi homolog 2 (Drosophila)	NM_054043|Msi2|76626|Musashi homolog 2 (Drosophila)
mm9_v1_chr5_-_111239115_111239150	0.0104144	GLI1..3.p2	AK154939|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr5_-_121822213_121822316	0.0103838	GLI1..3.p2	AK211451|Trafd1|231712|TRAF type zinc finger domain containing 1	AK212088|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr10_+_126415772_126415772	0.0103808	GLI1..3.p2	BC085142|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	NM_001113470|Ctdsp2|52468|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm9_v1_chr10_-_79361719_79361739	0.0103301	GLI1..3.p2	
mm9_v1_chr1_-_34899809_34899850	0.0102758	GLI1..3.p2	BC043098|Fam168b|214469|family with sequence similarity 168, member B
mm9_v1_chr8_-_95603838_95603915	0.0101924	GLI1..3.p2	NM_001081372|Ces1b|382044|carboxylesterase 1B
mm9_v1_chr17_+_24686778_24686992	0.0101895	GLI1..3.p2	BC099589|Pkd1|18763|polycystic kidney disease 1 homolog	NM_013630|Pkd1|18763|polycystic kidney disease 1 homolog	U70209|Pkd1|18763|polycystic kidney disease 1 homolog
mm9_v1_chr11_+_60541880_60542010	0.0101803	GLI1..3.p2	NM_001009927|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK156917|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	AK171444|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)	BC088984|Smcr7|237781|Smith-Magenis syndrome chromosome region, candidate 7 homolog (human)
mm9_v1_chr1_+_44176812_44176851	0.0100924	GLI1..3.p2	AK047404|Bivm|246229|basic, immunoglobulin-like variable motif containing	NM_144558|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK032375|Bivm|246229|basic, immunoglobulin-like variable motif containing	AK034329|Bivm|246229|basic, immunoglobulin-like variable motif containing
mm9_v1_chrX_-_148776674_148776969	0.010076	GLI1..3.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr16_+_20141134_20141212	0.0100239	GLI1..3.p2	NM_001033237|Yeats2|208146|YEATS domain containing 2	NM_001145930|Yeats2|208146|YEATS domain containing 2	NM_001145931|Yeats2|208146|YEATS domain containing 2	AK165933|Yeats2|208146|YEATS domain containing 2	AK160791|Yeats2|208146|YEATS domain containing 2
mm9_v1_chr15_+_82005685_82005731	0.0100086	GLI1..3.p2	AK197179|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr10_-_43260744_43260803	0.0099777	GLI1..3.p2	AK008795|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	AK163304|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	BC013506|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	AK006199|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	NM_026411|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene	AK007370|1700021F05Rik|67851|RIKEN cDNA 1700021F05 gene
mm9_v1_chr3_-_78985249_78985262	0.0096584	GLI1..3.p2	AK037061|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr6_-_49195555_49195581	0.00940739	GLI1..3.p2	AK164994|Tra2a|101214|transformer 2 alpha homolog (Drosophila)
mm9_v1_chr2_+_163484110_163484121	0.00926712	GLI1..3.p2	AK135505|Pkig|18769|protein kinase inhibitor, gamma	NM_001039390|Pkig|18769|protein kinase inhibitor, gamma	NM_001039391|Pkig|18769|protein kinase inhibitor, gamma	NM_001164055|Pkig|18769|protein kinase inhibitor, gamma
mm9_v1_chr11_-_69615126_69615217	0.00923646	GLI1..3.p2	NM_010198|Fgf11|14166|fibroblast growth factor 11	U66203|Fgf11|14166|fibroblast growth factor 11	BC066859|Fgf11|14166|fibroblast growth factor 11
mm9_v1_chr10_+_79217820_79217863	0.00922829	GLI1..3.p2	BC119135|Fgf22|67112|fibroblast growth factor 22	AK008922|Fgf22|67112|fibroblast growth factor 22	AK010054|Fgf22|67112|fibroblast growth factor 22	AB036765|Fgf22|67112|fibroblast growth factor 22	NM_023304|Fgf22|67112|fibroblast growth factor 22
mm9_v1_chr6_-_120314373_120314396	0.00916392	GLI1..3.p2	AK031590|Ccdc77|67200|coiled-coil domain containing 77
mm9_v1_chr2_-_181327165_181327210	0.00915447	GLI1..3.p2	AK129308|Znf512b|269401|zinc finger protein 512B	NM_001164597|Znf512b|269401|zinc finger protein 512B
mm9_v1_chr7_+_53138934_53138972	0.00912846	GLI1..3.p2	
mm9_v1_chr14_-_55531726_55531986	0.00910832	GLI1..3.p2	BC062878|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AB012808|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK007059|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	BC005727|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK163116|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	NM_021551|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr4_-_133404491_133404575	0.00908305	GLI1..3.p2	
mm9_v1_chr6_-_88834347_88834425	0.00904214	GLI1..3.p2	AK198580|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)
mm9_v1_chr8_+_23171187_23171223	0.00897337	GLI1..3.p2	NM_183142|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK157746|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK046475|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	BC061469|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)	AK134312|Alg11|207958|asparagine-linked glycosylation 11 homolog (yeast, alpha-1,2-mannosyltransferase)
mm9_v1_chr12_+_70298163_70298251	0.00860865	GLI1..3.p2	AK161156|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK154174|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK034052|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene
mm9_v1_chr14_+_31764562_31764704	0.00852965	GLI1..3.p2	AK078809|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AJ223071|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	Y09234|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK147381|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK132803|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK149584|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK168094|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	BC057939|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AF099067|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	NM_011849|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4	AK144130|Nek4|23955|NIMA (never in mitosis gene a)-related expressed kinase 4
mm9_v1_chr1_+_36125380_36125439	0.00848818	GLI1..3.p2	AK157556|Hs6st1|50785|heparan sulfate 6-O-sulfotransferase 1
mm9_v1_chr16_-_90144013_90144100	0.00846216	GLI1..3.p2	BC065126|Tiam1|21844|T-cell lymphoma invasion and metastasis 1	AK043966|Tiam1|21844|T-cell lymphoma invasion and metastasis 1
mm9_v1_chr9_+_77602582_77602622	0.00841519	GLI1..3.p2	AK160876|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	BC019374|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	NM_010295|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85414|Gclc|14629|glutamate-cysteine ligase, catalytic subunit	U85498|Gclc|14629|glutamate-cysteine ligase, catalytic subunit
mm9_v1_chr16_-_18407565_18407802	0.00840929	GLI1..3.p2	AK084547|Comt|12846|catechol-O-methyltransferase	AK133500|Comt|12846|catechol-O-methyltransferase
mm9_v1_chr3_+_88968894_88969004	0.0082943	GLI1..3.p2	AF033564|Clk2|12748|CDC-like kinase 2
mm9_v1_chr5_-_92566671_92566678	0.00820713	GLI1..3.p2	
mm9_v1_chr1_+_166179383_166179419	0.00817054	GLI1..3.p2	AF326916|Slc19a2|116914|solute carrier family 19 (thiamine transporter), member 2
mm9_v1_chr1_-_174149989_174150025	0.00791974	GLI1..3.p2	NM_009813|Casq1|12372|calsequestrin 1
mm9_v1_chr11_+_72812583_72812651	0.00778077	GLI1..3.p2	AF310647|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	BC015084|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	AK035304|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	NM_008771|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	X84896|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1
mm9_v1_chr7_-_91754314_91754336	0.00768551	GLI1..3.p2	AK158808|Fah|14085|fumarylacetoacetate hydrolase
mm9_v1_chr3_+_58380651_58380703	0.00750577	GLI1..3.p2	BC038867|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene
mm9_v1_chr4_-_142889312_142889356	0.00745527	GLI1..3.p2	M73748|Pdpn|14726|podoplanin	BC026551|Pdpn|14726|podoplanin
mm9_v1_chr3_+_52072251_52072295	0.00743982	GLI1..3.p2	AK154041|Foxo1|56458|forkhead box O1	NM_019739|Foxo1|56458|forkhead box O1	AJ252157|Foxo1|56458|forkhead box O1
mm9_v1_chr1_+_74283113_74283139	0.00739124	GLI1..3.p2	AK170061|Arpc2|76709|actin related protein 2/3 complex, subunit 2	NM_029711|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr17_-_26063534_26063588	0.00731658	GLI1..3.p2	
mm9_v1_chr6_-_88791928_88791961	0.0072935	GLI1..3.p2	NM_030251|Abtb1|80283|ankyrin repeat and BTB (POZ) domain containing 1
mm9_v1_chr2_+_155212676_155212898	0.00726127	GLI1..3.p2	AK186401|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK195529|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK196103|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212608|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr10_-_62188846_62188846	0.00717499	GLI1..3.p2	BC137978|Stox1|216021|storkhead box 1	NM_001033260|Stox1|216021|storkhead box 1
mm9_v1_chr2_+_92215590_92215711	0.00717011	GLI1..3.p2	BC010822|Pex16|18633|peroxisomal biogenesis factor 16
mm9_v1_chr17_+_64950038_64950114	0.00711934	GLI1..3.p2	AK144763|Man2a1|17158|mannosidase 2, alpha 1
mm9_v1_chr8_+_35881739_35881782	0.00711438	GLI1..3.p2	
mm9_v1_chr15_-_66801093_66801186	0.00706453	GLI1..3.p2	BC141246|Ndrg1|17988|N-myc downstream regulated gene 1	BC171968|Ndrg1|17988|N-myc downstream regulated gene 1	BC015282|Ndrg1|17988|N-myc downstream regulated gene 1	U52073|Ndrg1|17988|N-myc downstream regulated gene 1	BC071235|Ndrg1|17988|N-myc downstream regulated gene 1
mm9_v1_chr1_-_72921098_72921102	0.00685219	GLI1..3.p2	L12447|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr17_+_37407160_37407208	0.00685202	GLI1..3.p2	NM_013819|H2-M3|14991|histocompatibility 2, M region locus 3	BC031984|H2-M3|14991|histocompatibility 2, M region locus 3	U18797|H2-M3|14991|histocompatibility 2, M region locus 3
mm9_v1_chr17_-_56214328_56214451	0.00666484	GLI1..3.p2	BC016412|Ubxn6|66530|UBX domain protein 6	AK148170|Ubxn6|66530|UBX domain protein 6	BC049963|Ubxn6|66530|UBX domain protein 6	NM_024432|Ubxn6|66530|UBX domain protein 6	AK008942|Ubxn6|66530|UBX domain protein 6	AF272895|Ubxn6|66530|UBX domain protein 6	AK161273|Ubxn6|66530|UBX domain protein 6	AK075705|Ubxn6|66530|UBX domain protein 6	AK082510|Ubxn6|66530|UBX domain protein 6
mm9_v1_chr3_-_107499387_107499429	0.00666107	GLI1..3.p2	AK087454|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr6_-_7933383_7933439	0.00654994	GLI1..3.p2	
mm9_v1_chr15_-_97738692_97738754	0.00652532	GLI1..3.p2	BC006716|Vdr|22337|vitamin D receptor	D31969|Vdr|22337|vitamin D receptor	AK154647|Vdr|22337|vitamin D receptor	AK030339|Vdr|22337|vitamin D receptor	NM_009504|Vdr|22337|vitamin D receptor	AK156789|Vdr|22337|vitamin D receptor
mm9_v1_chr5_+_30890386_30890554	0.00643238	GLI1..3.p2	AF065162|Kcnk3|16527|potassium channel, subfamily K, member 3	BC032047|Kcnk3|16527|potassium channel, subfamily K, member 3	NM_010608|Kcnk3|16527|potassium channel, subfamily K, member 3	AB013345|Kcnk3|16527|potassium channel, subfamily K, member 3
mm9_v1_chr2_+_69735513_69735613	0.00641361	GLI1..3.p2	BC145475|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	BC172146|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3
mm9_v1_chr2_+_11699379_11699379	0.00641313	GLI1..3.p2	NM_177268|Ankrd16|320816|ankyrin repeat domain 16
mm9_v1_chr4_-_116314542_116314556	0.00625935	GLI1..3.p2	AK178751|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK203039|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr9_-_26816373_26816466	0.00616298	GLI1..3.p2	AK216030|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK007456|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr7_-_109358604_109358711	0.00599246	GLI1..3.p2	BC050911|Nup98|269966|nucleoporin 98	BC057608|Nup98|269966|nucleoporin 98	BC112912|Nup98|269966|nucleoporin 98	NM_022979|Nup98|269966|nucleoporin 98	AK172207|Nup98|269966|nucleoporin 98	AK137234|Nup98|269966|nucleoporin 98	AK089973|Nup98|269966|nucleoporin 98	AK164402|Nup98|269966|nucleoporin 98
mm9_v1_chr5_-_86494403_86494607	0.00582107	GLI1..3.p2	BC150700|Cenpc1|12617|centromere protein C1	U03113|Cenpc1|12617|centromere protein C1	AK089392|Cenpc1|12617|centromere protein C1	AK137953|Cenpc1|12617|centromere protein C1	AK137803|Cenpc1|12617|centromere protein C1	AK011004|Cenpc1|12617|centromere protein C1	AK143566|Cenpc1|12617|centromere protein C1	NM_007683|Cenpc1|12617|centromere protein C1
mm9_v1_chr10_-_31165613_31165628	0.00576616	GLI1..3.p2	BC141068|Tpd52l1|21987|tumor protein D52-like 1	BC145321|Tpd52l1|21987|tumor protein D52-like 1	BC145322|Tpd52l1|21987|tumor protein D52-like 1	BC171924|Tpd52l1|21987|tumor protein D52-like 1	AK131855|Tpd52l1|21987|tumor protein D52-like 1
mm9_v1_chr7_-_52754120_52754139	0.00576328	GLI1..3.p2	AK194015|Nucb1|18220|nucleobindin 1
mm9_v1_chr7_-_54051250_54051427	0.0056914	GLI1..3.p2	BC082542|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005247|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001005248|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	NM_001167864|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)	BC046443|Hps5|246694|Hermansky-Pudlak syndrome 5 homolog (human)
mm9_v1_chr7_-_97052120_97052138	0.00563968	GLI1..3.p2	AK014876|Ccdc81|70884|coiled-coil domain containing 81	BC127049|Ccdc81|70884|coiled-coil domain containing 81	BC152307|Ccdc81|70884|coiled-coil domain containing 81	BC152308|Ccdc81|70884|coiled-coil domain containing 81	AK029544|Ccdc81|70884|coiled-coil domain containing 81	NM_001162979|Ccdc81|70884|coiled-coil domain containing 81
mm9_v1_chr18_+_84257252_84257278	0.00557697	GLI1..3.p2	AK134901|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2
mm9_v1_chr14_-_58017351_58017365	0.00555249	GLI1..3.p2	AF351609|Cryl1|68631|crystallin, lambda 1	AK003913|Cryl1|68631|crystallin, lambda 1	AK043569|Cryl1|68631|crystallin, lambda 1
mm9_v1_chr17_+_36117612_36117622	0.00550058	GLI1..3.p2	X65026|Gnl1|14670|guanine nucleotide binding protein-like 1
mm9_v1_chr9_+_77956998_77957048	0.00539418	GLI1..3.p2	AK154185|Ick|56542|intestinal cell kinase	NM_001163780|Ick|56542|intestinal cell kinase
mm9_v1_chr16_-_5222354_5222385	0.00537162	GLI1..3.p2	BC150828|AU021092|239691|expressed sequence AU021092	BC171979|AU021092|239691|expressed sequence AU021092	AK140126|AU021092|239691|expressed sequence AU021092
mm9_v1_chr2_-_92227752_92227789	0.00529887	GLI1..3.p2	AK218579|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr11_+_20443315_20443422	0.00516684	GLI1..3.p2	AB041541|Sertad2|58172|SERTA domain containing 2	BC014726|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr1_-_25886551_25886551	0.00500321	GLI1..3.p2	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr11_+_119134231_119134236	0.00492345	GLI1..3.p2	AK192147|Gaa|14387|glucosidase, alpha, acid	AK197764|Gaa|14387|glucosidase, alpha, acid	AK210560|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr4_-_150421459_150421590	0.00490875	GLI1..3.p2	
mm9_v1_chr9_-_57474908_57475111	0.00480091	GLI1..3.p2	AK194012|Csk|12988|c-src tyrosine kinase
mm9_v1_chr12_-_16596537_16596561	0.00465453	GLI1..3.p2	AK141489|Lpin1|14245|lipin 1	AF180471|Lpin1|14245|lipin 1
mm9_v1_chr11_+_3931731_3931881	0.00456529	GLI1..3.p2	BC026948|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	NM_146013|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	AK028954|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)
mm9_v1_chr4_+_149022266_149022381	0.00441827	GLI1..3.p2	
mm9_v1_chr3_+_146515369_146515388	0.00438225	GLI1..3.p2	AK014905|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr2_-_151543541_151543662	0.00437745	GLI1..3.p2	AK195843|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	AK216758|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1
mm9_v1_chr15_+_100446514_100446564	0.0042807	GLI1..3.p2	AK151730|Dazap2|23994|DAZ associated protein 2	AK152511|Dazap2|23994|DAZ associated protein 2
mm9_v1_chr11_-_97011324_97011437	0.00421985	GLI1..3.p2	AK014173|Tbkbp1|73174|TBK1 binding protein 1
mm9_v1_chr15_-_79572885_79572998	0.00410715	GLI1..3.p2	BC098208|Sun2|223697|Sad1 and UNC84 domain containing 2	AK171058|Sun2|223697|Sad1 and UNC84 domain containing 2	AK046318|Sun2|223697|Sad1 and UNC84 domain containing 2	AK085196|Sun2|223697|Sad1 and UNC84 domain containing 2	AK128958|Sun2|223697|Sad1 and UNC84 domain containing 2	NM_194342|Sun2|223697|Sad1 and UNC84 domain containing 2	AK156246|Sun2|223697|Sad1 and UNC84 domain containing 2	AK172398|Sun2|223697|Sad1 and UNC84 domain containing 2
mm9_v1_chr7_-_107475377_107475426	0.00399695	GLI1..3.p2	
mm9_v1_chr2_-_130250376_130250436	0.00390537	GLI1..3.p2	NM_001114541|Fam113a|319513|family with sequence similarity 113, member A	BC064802|Fam113a|319513|family with sequence similarity 113, member A	AK031469|Fam113a|319513|family with sequence similarity 113, member A
mm9_v1_chr8_+_125935470_125935482	0.00386308	GLI1..3.p2	AF312873|Tubb3|22152|tubulin, beta 3
mm9_v1_chr17_-_34424623_34424771	0.00385158	GLI1..3.p2	AF065910|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AF065911|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M11356|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M11357|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M11358|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	K01924|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	K01922|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AF119253|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AF119254|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	X52643|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AY452201|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC019721|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	NM_010378|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK154000|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC031711|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	K01923|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M21931|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	V00832|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC029620|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC043925|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK171383|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK002532|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK170931|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK170844|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha
mm9_v1_chr3_+_88342459_88342597	0.0037756	GLI1..3.p2	AK012557|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr8_+_125927553_125927654	0.0037151	GLI1..3.p2	AK212341|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr3_+_94641626_94641643	0.00367368	GLI1..3.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr6_-_83003346_83003410	0.00359128	GLI1..3.p2	AK176936|Htra2|64704|HtrA serine peptidase 2	AK178298|Htra2|64704|HtrA serine peptidase 2	AK182973|Htra2|64704|HtrA serine peptidase 2	AK186135|Htra2|64704|HtrA serine peptidase 2	AK188221|Htra2|64704|HtrA serine peptidase 2	AK215600|Htra2|64704|HtrA serine peptidase 2
mm9_v1_chr4_-_148500769_148500849	0.00353425	GLI1..3.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr14_+_121434765_121434823	0.00346672	GLI1..3.p2	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr3_+_97705125_97705203	0.0034023	GLI1..3.p2	AK010363|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK034973|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK017237|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK037918|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK088514|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK134215|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	NM_011342|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	AK089928|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	BC009024|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)	U91538|Sec22b|20333|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
mm9_v1_chr6_-_29129579_29129583	0.00332392	GLI1..3.p2	BC140954|Prrt4|101359|proline-rich transmembrane protein 4	AK052319|Prrt4|101359|proline-rich transmembrane protein 4	NM_001101443|Prrt4|101359|proline-rich transmembrane protein 4
mm9_v1_chr5_+_35384200_35384209	0.00324909	GLI1..3.p2	AB009294|Hgfac|54426|hepatocyte growth factor activator	NM_019447|Hgfac|54426|hepatocyte growth factor activator	AK007987|Hgfac|54426|hepatocyte growth factor activator	AK169989|Hgfac|54426|hepatocyte growth factor activator
mm9_v1_chr8_-_72433344_72433376	0.00323918	GLI1..3.p2	AK004386|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr9_-_114549148_114549229	0.00321206	GLI1..3.p2	AK149944|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK167288|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	BC025554|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK029103|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	NM_153585|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK080503|Cnot10|78893|CCR4-NOT transcription complex, subunit 10	AK157824|Cnot10|78893|CCR4-NOT transcription complex, subunit 10
mm9_v1_chr19_-_46387052_46387173	0.00316632	GLI1..3.p2	BC069847|Psd|73728|pleckstrin and Sec7 domain containing
mm9_v1_chr8_-_97362140_97362260	0.00316566	GLI1..3.p2	AK088757|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	BC021864|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK146282|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK168252|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK076116|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK079615|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK163705|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	AK136821|Ciapin1|109006|cytokine induced apoptosis inhibitor 1	NM_134141|Ciapin1|109006|cytokine induced apoptosis inhibitor 1
mm9_v1_chr5_-_87521574_87521580	0.00316099	GLI1..3.p2	BC141232|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36	BC145555|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36	NM_001029867|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36	AK149425|Ugt2b36|231396|UDP glucuronosyltransferase 2 family, polypeptide B36
mm9_v1_chr9_+_20468065_20468091	0.00309144	GLI1..3.p2	
mm9_v1_chr10_-_80170648_80170694	0.00306448	GLI1..3.p2	
mm9_v1_chr13_-_77274698_77274775	0.00303817	GLI1..3.p2	AK047775|Ankrd32|105377|ankyrin repeat domain 32	BC100362|Ankrd32|105377|ankyrin repeat domain 32	BC061188|Ankrd32|105377|ankyrin repeat domain 32	AK012253|Ankrd32|105377|ankyrin repeat domain 32	AK089501|Ankrd32|105377|ankyrin repeat domain 32	AK171473|Ankrd32|105377|ankyrin repeat domain 32	NM_134071|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr6_-_48790978_48791029	0.00301255	GLI1..3.p2	BC022166|Tmem176b|65963|transmembrane protein 176B	NM_023056|Tmem176b|65963|transmembrane protein 176B	AK007408|Tmem176b|65963|transmembrane protein 176B
mm9_v1_chr19_+_8969711_8969726	0.00298354	GLI1..3.p2	AK179191|Ints5|109077|integrator complex subunit 5	AK183632|Ints5|109077|integrator complex subunit 5
mm9_v1_chr12_+_3572838_3573040	0.00296336	GLI1..3.p2	AJ010223|Dtnb|13528|dystrobrevin, beta	BC030924|Dtnb|13528|dystrobrevin, beta	NM_007886|Dtnb|13528|dystrobrevin, beta
mm9_v1_chr4_-_45421590_45421646	0.00295809	GLI1..3.p2	AK150362|Mcart1|230125|mitochondrial carrier triple repeat 1	AK151688|Mcart1|230125|mitochondrial carrier triple repeat 1	AK152171|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156168|Mcart1|230125|mitochondrial carrier triple repeat 1	AK156342|Mcart1|230125|mitochondrial carrier triple repeat 1	AK146788|Mcart1|230125|mitochondrial carrier triple repeat 1	AK020275|Mcart1|230125|mitochondrial carrier triple repeat 1	AK164726|Mcart1|230125|mitochondrial carrier triple repeat 1	AK172225|Mcart1|230125|mitochondrial carrier triple repeat 1	AK051139|Mcart1|230125|mitochondrial carrier triple repeat 1	AK165253|Mcart1|230125|mitochondrial carrier triple repeat 1	NM_001009949|Mcart1|230125|mitochondrial carrier triple repeat 1
mm9_v1_chr7_+_127778702_127778797	0.0029448	GLI1..3.p2	NM_025899|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK005151|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK003975|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK004492|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	BC003423|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK088103|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK167377|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK077583|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2	AK075856|Uqcrc2|67003|ubiquinol cytochrome c reductase core protein 2
mm9_v1_chr8_-_108734731_108734745	0.00288516	GLI1..3.p2	AK134626|Slc7a6os|66432|solute carrier family 7, member 6 opposite strand
mm9_v1_chr5_-_109058760_109058761	0.00280542	GLI1..3.p2	AK159767|Gak|231580|cyclin G associated kinase
mm9_v1_chr6_+_82984190_82984300	0.00277481	GLI1..3.p2	AF053368|Loxl3|16950|lysyl oxidase-like 3	AK145189|Loxl3|16950|lysyl oxidase-like 3	AK030548|Loxl3|16950|lysyl oxidase-like 3	NM_013586|Loxl3|16950|lysyl oxidase-like 3	BC011298|Loxl3|16950|lysyl oxidase-like 3
mm9_v1_chr1_-_193916320_193916449	0.00274843	GLI1..3.p2	D83528|Traf5|22033|TNF receptor-associated factor 5	BC012702|Traf5|22033|TNF receptor-associated factor 5	AK144694|Traf5|22033|TNF receptor-associated factor 5	AK141097|Traf5|22033|TNF receptor-associated factor 5	D78141|Traf5|22033|TNF receptor-associated factor 5	NM_011633|Traf5|22033|TNF receptor-associated factor 5
mm9_v1_chr15_+_38837818_38837834	0.00268211	GLI1..3.p2	NM_001162494|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr11_-_103226457_103226546	0.00265121	GLI1..3.p2	
mm9_v1_chr1_+_39424712_39424781	0.00247697	GLI1..3.p2	AK075964|Rpl31|114641|ribosomal protein L31	BC055720|Rpl31|114641|ribosomal protein L31	AK011236|Rpl31|114641|ribosomal protein L31	AK019226|Rpl31|114641|ribosomal protein L31	AK020627|Rpl31|114641|ribosomal protein L31	BC086916|Rpl31|114641|ribosomal protein L31	AK160620|Rpl31|114641|ribosomal protein L31	AK014295|Rpl31|114641|ribosomal protein L31	AF362574|Rpl31|114641|ribosomal protein L31
mm9_v1_chr2_+_33097791_33097802	0.00240086	GLI1..3.p2	AK187902|Angptl2|26360|angiopoietin-like 2	AK205240|Angptl2|26360|angiopoietin-like 2	AK214337|Angptl2|26360|angiopoietin-like 2
mm9_v1_chr16_-_85173764_85173823	0.0022638	GLI1..3.p2	AK218334|App|11820|amyloid beta (A4) precursor protein	AY267348|App|11820|amyloid beta (A4) precursor protein	AK148439|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr2_+_172266042_172266209	0.00223058	GLI1..3.p2	AK053258|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK010321|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK077823|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	NM_025542|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK009901|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC049072|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK167287|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK028792|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC004803|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK219307|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK209674|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK169588|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK170141|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	AK153121|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC096692|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116442|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC116443|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene	BC127166|2410001C21Rik|66404|RIKEN cDNA 2410001C21 gene
mm9_v1_chrX_+_10294740_10294786	0.00221365	GLI1..3.p2	AK188647|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr12_+_87087488_87087539	0.0022028	GLI1..3.p2	AY260574|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260575|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AY260576|Mfsd7c|217721|major facilitator superfamily domain containing 7C	BC011209|Mfsd7c|217721|major facilitator superfamily domain containing 7C	NM_145447|Mfsd7c|217721|major facilitator superfamily domain containing 7C	AK145696|Mfsd7c|217721|major facilitator superfamily domain containing 7C
mm9_v1_chr4_-_155571450_155571620	0.00211707	GLI1..3.p2	U84407|Agrn|11603|agrin	AY914875|Agrn|11603|agrin	AF190858|Agrn|11603|agrin	AK134826|Agrn|11603|agrin
mm9_v1_chr19_-_4906607_4906628	0.00206094	GLI1..3.p2	AK037753|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	BC076577|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK161343|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK045850|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	AK168901|Bbs1|52028|Bardet-Biedl syndrome 1 (human)	NM_001033128|Bbs1|52028|Bardet-Biedl syndrome 1 (human)
mm9_v1_chr16_-_5222390_5222400	0.00200766	GLI1..3.p2	NM_001033220|AU021092|239691|expressed sequence AU021092
mm9_v1_chr19_+_5647822_5648036	0.00193195	GLI1..3.p2	AK202240|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK203832|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr7_+_35904347_35904361	0.00188051	GLI1..3.p2	AK155281|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr12_+_74224693_74224793	0.00171425	GLI1..3.p2	AK048499|Mnat1|17420|menage a trois 1	AK155859|Mnat1|17420|menage a trois 1	NM_008612|Mnat1|17420|menage a trois 1	AK008249|Mnat1|17420|menage a trois 1	BC089023|Mnat1|17420|menage a trois 1	BC115630|Mnat1|17420|menage a trois 1	BC115631|Mnat1|17420|menage a trois 1	AK157721|Mnat1|17420|menage a trois 1	AK008134|Mnat1|17420|menage a trois 1	AK053621|Mnat1|17420|menage a trois 1	AK011833|Mnat1|17420|menage a trois 1	AK029174|Mnat1|17420|menage a trois 1
mm9_v1_chr8_-_24301206_24301672	0.00167258	GLI1..3.p2	AK178773|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK182757|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK204634|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AY489184|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	AK188390|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)	BC031767|Agpat6|102247|1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)
mm9_v1_chr7_-_149561853_149562071	0.00162816	GLI1..3.p2	AK177774|Ctsd|13033|cathepsin D
mm9_v1_chr11_-_118254729_118254841	0.00161345	GLI1..3.p2	AK200165|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein
mm9_v1_chr15_+_78075220_78075493	0.00158414	GLI1..3.p2	NM_008677|Ncf4|17972|neutrophil cytosolic factor 4	AK150510|Ncf4|17972|neutrophil cytosolic factor 4	AB002665|Ncf4|17972|neutrophil cytosolic factor 4	U59488|Ncf4|17972|neutrophil cytosolic factor 4	BC025517|Ncf4|17972|neutrophil cytosolic factor 4	FJ168470|Ncf4|17972|neutrophil cytosolic factor 4	AK171315|Ncf4|17972|neutrophil cytosolic factor 4
mm9_v1_chr2_-_85036855_85036855	0.00157522	GLI1..3.p2	AK134968|Lrrc55|241528|leucine rich repeat containing 55	BC141221|Lrrc55|241528|leucine rich repeat containing 55	NM_001033346|Lrrc55|241528|leucine rich repeat containing 55
mm9_v1_chr9_-_106368268_106368278	0.00151947	GLI1..3.p2	NM_001159652|Gpr62|436090|G protein-coupled receptor 62
mm9_v1_chr15_-_72376708_72376769	0.00128579	GLI1..3.p2	DQ185133|Kcnk9|223604|potassium channel, subfamily K, member 9	NM_001033876|Kcnk9|223604|potassium channel, subfamily K, member 9	BC139167|Kcnk9|223604|potassium channel, subfamily K, member 9	BC139168|Kcnk9|223604|potassium channel, subfamily K, member 9
mm9_v1_chr3_-_97020401_97020429	0.00117697	GLI1..3.p2	BC137850|Bcl9|77578|B-cell CLL/lymphoma 9	AY296061|Bcl9|77578|B-cell CLL/lymphoma 9	NM_029933|Bcl9|77578|B-cell CLL/lymphoma 9
mm9_v1_chrX_+_57252630_57252647	0.000962076	GLI1..3.p2	AK149372|F9|14071|coagulation factor IX	NM_007979|F9|14071|coagulation factor IX	BC125617|F9|14071|coagulation factor IX	BC132393|F9|14071|coagulation factor IX
mm9_v1_chr2_-_117168409_117168515	0.000842947	GLI1..3.p2	AF106070|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr16_+_17276720_17276769	0.000783825	GLI1..3.p2	BC058760|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr5_-_135391315_135391362	0.000721686	GLI1..3.p2	BC115481|Cldn13|57255|claudin 13	BC115482|Cldn13|57255|claudin 13
mm9_v1_chr15_-_32174172_32174174	0.000634372	GLI1..3.p2	AK007520|Snord123|66835|small nucleolar RNA, C/D box 123
mm9_v1_chr7_+_107327192_107327214	0.000431248	GLI1..3.p2	NM_001190870|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	NM_001190871|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	NM_001190950|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	NM_020574|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	AK008744|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	DQ832280|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3	BC004629|Kcne3|57442|potassium voltage-gated channel, Isk-related subfamily, gene 3
mm9_v1_chr11_-_100389160_100389193	0.000357412	GLI1..3.p2	AK169703|Acly|104112|ATP citrate lyase	AK135528|Acly|104112|ATP citrate lyase	AK162364|Acly|104112|ATP citrate lyase
mm9_v1_chr19_+_45438212_45438344	0.00030566	GLI1..3.p2	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr8_+_89996675_89996716	0.00028526	GLI1..3.p2	AK135135|Gm2694|100040294|predicted gene 2694	AK137304|Gm2694|100040294|predicted gene 2694
mm9_v1_chr11_+_43534658_43534687	0.000257677	GLI1..3.p2	AK086604|Pwwp2a|70802|PWWP domain containing 2A	AK039984|Pwwp2a|70802|PWWP domain containing 2A
mm9_v1_chr11_+_97702591_97702632	0.000192766	GLI1..3.p2	AK081899|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK140210|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK042827|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK031146|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK035650|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK018341|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK080808|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene	AK082773|B230217C12Rik|68127|RIKEN cDNA B230217C12 gene
mm9_v1_chr3_-_62310907_62310910	0.000100314	GLI1..3.p2	AF448804|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	BC006615|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36	NM_028136|Dhx36|72162|DEAH (Asp-Glu-Ala-His) box polypeptide 36
