mm9_v1_chr7_-_110991602_110991677	12.9754	HNF4A_NR2F1,2.p2	M26894|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	BC052008|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	BC089456|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK011309|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK012654|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK011296|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK012442|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK012495|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK012684|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK160642|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	NM_008219|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain	AK028208|Hbb-bh1|15132|hemoglobin Z, beta-like embryonic chain
mm9_v1_chr7_-_111001598_111001720	11.6737	HNF4A_NR2F1,2.p2	V00857|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	M26897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	BC057014|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK011619|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012501|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	AK012897|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain	NM_008221|Hbb-y|15135|hemoglobin Y, beta-like embryonic chain
mm9_v1_chr1_-_137064124_137064257	10.2714	HNF4A_NR2F1,2.p2	AK158275|Gpr37l1|171469|G protein-coupled receptor 37-like 1	NM_134438|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr19_+_39361574_39361600	8.84043	HNF4A_NR2F1,2.p2	NM_007815|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	BC019908|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29	D17674|Cyp2c29|13095|cytochrome P450, family 2, subfamily c, polypeptide 29
mm9_v1_chr6_+_71149869_71149892	8.03896	HNF4A_NR2F1,2.p2	AK131868|Fabp1|14080|fatty acid binding protein 1, liver	NM_017399|Fabp1|14080|fatty acid binding protein 1, liver	Y14660|Fabp1|14080|fatty acid binding protein 1, liver	BC009812|Fabp1|14080|fatty acid binding protein 1, liver
mm9_v1_chr19_-_44482033_44482056	7.91801	HNF4A_NR2F1,2.p2	AF509567|Scd1|20249|stearoyl-Coenzyme A desaturase 1	AF509570|Scd1|20249|stearoyl-Coenzyme A desaturase 1	BC007474|Scd1|20249|stearoyl-Coenzyme A desaturase 1	AK142630|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr5_-_138052555_138052672	7.7898	HNF4A_NR2F1,2.p2	AB008548|Pcolce|18542|procollagen C-endopeptidase enhancer protein	AK142615|Pcolce|18542|procollagen C-endopeptidase enhancer protein	X57337|Pcolce|18542|procollagen C-endopeptidase enhancer protein	AK159430|Pcolce|18542|procollagen C-endopeptidase enhancer protein	AK159940|Pcolce|18542|procollagen C-endopeptidase enhancer protein	AK144392|Pcolce|18542|procollagen C-endopeptidase enhancer protein	AK146829|Pcolce|18542|procollagen C-endopeptidase enhancer protein	NM_008788|Pcolce|18542|procollagen C-endopeptidase enhancer protein	AK162524|Pcolce|18542|procollagen C-endopeptidase enhancer protein
mm9_v1_chr1_+_162917586_162917638	7.73912	HNF4A_NR2F1,2.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr11_-_102758340_102758449	7.66798	HNF4A_NR2F1,2.p2	AF332061|Gfap|14580|glial fibrillary acidic protein	AF332062|Gfap|14580|glial fibrillary acidic protein	K01347|Gfap|14580|glial fibrillary acidic protein	M25937|Gfap|14580|glial fibrillary acidic protein	BC100737|Gfap|14580|glial fibrillary acidic protein	BC103571|Gfap|14580|glial fibrillary acidic protein	BC100728|Gfap|14580|glial fibrillary acidic protein	BC101968|Gfap|14580|glial fibrillary acidic protein	AK079577|Gfap|14580|glial fibrillary acidic protein	AK140151|Gfap|14580|glial fibrillary acidic protein
mm9_v1_chr9_+_46036788_46036792	7.20729	HNF4A_NR2F1,2.p2	AK076187|Apoa1|11806|apolipoprotein A-I	AK131864|Apoa1|11806|apolipoprotein A-I	AK149576|Apoa1|11806|apolipoprotein A-I	AK161536|Apoa1|11806|apolipoprotein A-I	X64262|Apoa1|11806|apolipoprotein A-I
mm9_v1_chr1_+_162917640_162917674	7.00237	HNF4A_NR2F1,2.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr15_+_3220999_3221005	6.54274	HNF4A_NR2F1,2.p2	AK168463|Sepp1|20363|selenoprotein P, plasma, 1	BC001991|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr9_-_46043339_46043387	5.88302	HNF4A_NR2F1,2.p2	BC021776|Apoc3|11814|apolipoprotein C-III	AK002908|Apoc3|11814|apolipoprotein C-III	NM_023114|Apoc3|11814|apolipoprotein C-III	L04150|Apoc3|11814|apolipoprotein C-III	AK008260|Apoc3|11814|apolipoprotein C-III
mm9_v1_chr11_-_77707282_77707373	5.84529	HNF4A_NR2F1,2.p2	U94700|Pipox|19193|pipecolic acid oxidase	BC013525|Pipox|19193|pipecolic acid oxidase	AK135009|Pipox|19193|pipecolic acid oxidase	AK149488|Pipox|19193|pipecolic acid oxidase	AK008555|Pipox|19193|pipecolic acid oxidase	NM_008952|Pipox|19193|pipecolic acid oxidase
mm9_v1_chr2_+_172978566_172978589	5.57393	HNF4A_NR2F1,2.p2	AK028046|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK080261|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK133496|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK149525|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	NM_011044|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	AK030327|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	BC028342|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic	BC037629|Pck1|18534|phosphoenolpyruvate carboxykinase 1, cytosolic
mm9_v1_chr15_+_3220994_3220998	5.20979	HNF4A_NR2F1,2.p2	AK002450|Sepp1|20363|selenoprotein P, plasma, 1	AK077265|Sepp1|20363|selenoprotein P, plasma, 1	AK146774|Sepp1|20363|selenoprotein P, plasma, 1	AK148623|Sepp1|20363|selenoprotein P, plasma, 1	AK159269|Sepp1|20363|selenoprotein P, plasma, 1	AK159524|Sepp1|20363|selenoprotein P, plasma, 1	AK159911|Sepp1|20363|selenoprotein P, plasma, 1	AK159935|Sepp1|20363|selenoprotein P, plasma, 1	AK167611|Sepp1|20363|selenoprotein P, plasma, 1	AK168631|Sepp1|20363|selenoprotein P, plasma, 1	AK168747|Sepp1|20363|selenoprotein P, plasma, 1	AK168926|Sepp1|20363|selenoprotein P, plasma, 1	AK169011|Sepp1|20363|selenoprotein P, plasma, 1	AK169158|Sepp1|20363|selenoprotein P, plasma, 1	AK169362|Sepp1|20363|selenoprotein P, plasma, 1	AK159894|Sepp1|20363|selenoprotein P, plasma, 1	AK168583|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr4_-_61748264_61748345	4.9416	HNF4A_NR2F1,2.p2	EU882235|Mup3|17842|major urinary protein 3	M27608|Mup3|17842|major urinary protein 3	X03525|Mup3|17842|major urinary protein 3	BC019965|Mup3|17842|major urinary protein 3	BC106100|Mup3|17842|major urinary protein 3	BC059102|Mup3|17842|major urinary protein 3	NM_001039544|Mup3|17842|major urinary protein 3
mm9_v1_chr16_+_22892112_22892117	4.90683	HNF4A_NR2F1,2.p2	NM_013465|Ahsg|11625|alpha-2-HS-glycoprotein	AK149474|Ahsg|11625|alpha-2-HS-glycoprotein	AK149479|Ahsg|11625|alpha-2-HS-glycoprotein	AK167709|Ahsg|11625|alpha-2-HS-glycoprotein	AK133523|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr1_+_74552794_74553011	4.81956	HNF4A_NR2F1,2.p2	BC051948|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)	BC050898|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)	AF221849|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm9_v1_chr14_+_55059393_55059736	4.76072	HNF4A_NR2F1,2.p2	AK212295|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK186724|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK183589|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK218925|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK212401|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr1_+_173155184_173155238	4.49643	HNF4A_NR2F1,2.p2	NM_013474|Apoa2|11807|apolipoprotein A-II	M79361|Apoa2|11807|apolipoprotein A-II	M79362|Apoa2|11807|apolipoprotein A-II	AK145823|Apoa2|11807|apolipoprotein A-II	X62772|Apoa2|11807|apolipoprotein A-II	BC031786|Apoa2|11807|apolipoprotein A-II
mm9_v1_chr1_-_134439436_134439468	4.46466	HNF4A_NR2F1,2.p2	BC066106|Cntn2|21367|contactin 2	AK147573|Cntn2|21367|contactin 2	AK147658|Cntn2|21367|contactin 2	AK147673|Cntn2|21367|contactin 2
mm9_v1_chr3_+_90345082_90345194	4.33712	HNF4A_NR2F1,2.p2	BC020031|S100a16|67860|S100 calcium binding protein A16	NM_026416|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr16_+_44139908_44140168	4.26251	HNF4A_NR2F1,2.p2	NM_028108|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK167141|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK168394|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC057117|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK135658|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK156791|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK011160|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK145345|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC046283|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC004086|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	AK198408|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit	BC055846|Naa50|72117|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm9_v1_chrX_+_133371611_133371673	4.25702	HNF4A_NR2F1,2.p2	AK199492|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr1_-_134439500_134439516	4.251	HNF4A_NR2F1,2.p2	AK147602|Cntn2|21367|contactin 2	NM_177129|Cntn2|21367|contactin 2
mm9_v1_chr1_+_193645351_193645467	4.08197	HNF4A_NR2F1,2.p2	NM_010892|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK147072|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK077627|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK169330|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK164467|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	BC057576|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	BC011316|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK170179|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK171277|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AK171387|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AF007247|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	U95610|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	BC010302|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2	AF013166|Nek2|18005|NIMA (never in mitosis gene a)-related expressed kinase 2
mm9_v1_chr1_+_67169588_67169639	3.96534	HNF4A_NR2F1,2.p2	BC126969|Cps1|227231|carbamoyl-phosphate synthetase 1	NM_001080809|Cps1|227231|carbamoyl-phosphate synthetase 1
mm9_v1_chr9_-_57110250_57110427	3.59406	HNF4A_NR2F1,2.p2	BC150963|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	BC150965|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	BC118527|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK006055|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK145074|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK155015|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK029230|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK031730|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK044396|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK155487|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK165963|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	NM_028820|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK080676|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene	AK169617|1700017B05Rik|74211|RIKEN cDNA 1700017B05 gene
mm9_v1_chr11_+_5761862_5761989	3.57483	HNF4A_NR2F1,2.p2	NM_009636|Aebp1|11568|AE binding protein 1	AK128980|Aebp1|11568|AE binding protein 1	AK158276|Aebp1|11568|AE binding protein 1	AK159342|Aebp1|11568|AE binding protein 1	AK159409|Aebp1|11568|AE binding protein 1	BC082577|Aebp1|11568|AE binding protein 1	AF053943|Aebp1|11568|AE binding protein 1	AK159330|Aebp1|11568|AE binding protein 1	AK159774|Aebp1|11568|AE binding protein 1	AK159957|Aebp1|11568|AE binding protein 1	AK159377|Aebp1|11568|AE binding protein 1
mm9_v1_chr2_-_127346987_127347085	3.5197	HNF4A_NR2F1,2.p2	AF274050|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	DQ148499|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF300870|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC057329|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC026980|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC047139|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AK165711|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF184624|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr19_-_44482138_44482204	3.50434	HNF4A_NR2F1,2.p2	BC055453|Scd1|20249|stearoyl-Coenzyme A desaturase 1	AK148103|Scd1|20249|stearoyl-Coenzyme A desaturase 1	NM_009127|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr6_-_65094691_65094750	3.47601	HNF4A_NR2F1,2.p2	BC116735|Hpgds|54486|hematopoietic prostaglandin D synthase	BC116737|Hpgds|54486|hematopoietic prostaglandin D synthase	AK020246|Hpgds|54486|hematopoietic prostaglandin D synthase	AK039392|Hpgds|54486|hematopoietic prostaglandin D synthase	NM_019455|Hpgds|54486|hematopoietic prostaglandin D synthase
mm9_v1_chr12_+_7984451_7984482	3.4731	HNF4A_NR2F1,2.p2	BC100607|Apob|238055|apolipoprotein B	BC028880|Apob|238055|apolipoprotein B	BC038263|Apob|238055|apolipoprotein B	NM_009693|Apob|238055|apolipoprotein B
mm9_v1_chr17_-_71351523_71351579	3.45295	HNF4A_NR2F1,2.p2	AK045160|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK168016|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK018348|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK159151|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	BC020282|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK167553|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK151265|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK013776|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr2_-_29701764_29701831	3.37001	HNF4A_NR2F1,2.p2	BC129860|Gm3088|100041002|predicted gene 3088
mm9_v1_chr3_+_134875526_134875622	3.35007	HNF4A_NR2F1,2.p2	AK133445|Cenpe|229841|centromere protein E	NM_173762|Cenpe|229841|centromere protein E	BC080703|Cenpe|229841|centromere protein E	BC052843|Cenpe|229841|centromere protein E	BC039755|Cenpe|229841|centromere protein E	BC106096|Cenpe|229841|centromere protein E	AY493378|Cenpe|229841|centromere protein E
mm9_v1_chr7_-_112748624_112748633	3.26575	HNF4A_NR2F1,2.p2	AK145928|Hpx|15458|hemopexin	NM_017371|Hpx|15458|hemopexin
mm9_v1_chr6_+_124780226_124780272	3.25251	HNF4A_NR2F1,2.p2	AK008606|Cdca3|14793|cell division cycle associated 3	AK169792|Cdca3|14793|cell division cycle associated 3	AK010409|Cdca3|14793|cell division cycle associated 3	AK028159|Cdca3|14793|cell division cycle associated 3	AK145537|Cdca3|14793|cell division cycle associated 3	BC002006|Cdca3|14793|cell division cycle associated 3	BC027172|Cdca3|14793|cell division cycle associated 3
mm9_v1_chr2_+_35477498_35477550	3.09254	HNF4A_NR2F1,2.p2	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr7_+_29573191_29573292	3.08341	HNF4A_NR2F1,2.p2	AK200274|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)
mm9_v1_chr7_-_31840647_31840711	3.0702	HNF4A_NR2F1,2.p2	AK002585|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_019503|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_052992|Fxyd1|56188|FXYD domain-containing ion transport regulator 1
mm9_v1_chr13_-_24853723_24853834	3.04784	HNF4A_NR2F1,2.p2	AF068780|Gmnn|57441|geminin	BC020061|Gmnn|57441|geminin	AK131959|Gmnn|57441|geminin	NM_020567|Gmnn|57441|geminin
mm9_v1_chr6_+_117118552_117118673	2.99889	HNF4A_NR2F1,2.p2	NM_001012477|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_013655|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	NM_021704|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK157553|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK045092|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	AK075596|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43804|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D43805|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12029|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	L12030|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC046827|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC006640|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC020297|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	BC029335|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	D21072|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	S74318|Cxcl12|20315|chemokine (C-X-C motif) ligand 12	CT010389|Cxcl12|20315|chemokine (C-X-C motif) ligand 12
mm9_v1_chr11_-_114657186_114657223	2.96642	HNF4A_NR2F1,2.p2	BC060053|Btbd17|72014|BTB (POZ) domain containing 17	BC122876|Btbd17|72014|BTB (POZ) domain containing 17	AK032100|Btbd17|72014|BTB (POZ) domain containing 17	NM_028055|Btbd17|72014|BTB (POZ) domain containing 17	AK046050|Btbd17|72014|BTB (POZ) domain containing 17	AK005160|Btbd17|72014|BTB (POZ) domain containing 17	BC057599|Btbd17|72014|BTB (POZ) domain containing 17
mm9_v1_chrX_+_97972559_97972657	2.9535	HNF4A_NR2F1,2.p2	NM_001177780|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK159655|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK167365|Dlg3|53310|discs, large homolog 3 (Drosophila)	AK148464|Dlg3|53310|discs, large homolog 3 (Drosophila)
mm9_v1_chr10_-_13043959_13044096	2.90707	HNF4A_NR2F1,2.p2	BC130264|Phactr2|215789|phosphatase and actin regulator 2	AK142930|Phactr2|215789|phosphatase and actin regulator 2	NM_001033257|Phactr2|215789|phosphatase and actin regulator 2	NM_001195096|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr3_+_37538808_37538883	2.89701	HNF4A_NR2F1,2.p2	BC053428|Spry1|24063|sprouty homolog 1 (Drosophila)	NM_011896|Spry1|24063|sprouty homolog 1 (Drosophila)	AK014578|Spry1|24063|sprouty homolog 1 (Drosophila)	AK140405|Spry1|24063|sprouty homolog 1 (Drosophila)	BC039139|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr4_+_134066913_134066990	2.87781	HNF4A_NR2F1,2.p2	NM_001081099|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene	BC138271|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene	AK011279|2610002D18Rik|69885|RIKEN cDNA 2610002D18 gene
mm9_v1_chr16_+_20674298_20674336	2.87368	HNF4A_NR2F1,2.p2	BC021441|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr6_+_21935907_21936001	2.84729	HNF4A_NR2F1,2.p2	AK087585|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	NM_001081351|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	AK033229|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene	AK040587|A430107O13Rik|214642|RIKEN cDNA A430107O13 gene
mm9_v1_chr9_+_46036799_46036808	2.78534	HNF4A_NR2F1,2.p2	L04151|Apoa1|11806|apolipoprotein A-I	BC091745|Apoa1|11806|apolipoprotein A-I	BC019837|Apoa1|11806|apolipoprotein A-I	BC012253|Apoa1|11806|apolipoprotein A-I
mm9_v1_chr8_+_48072271_48072307	2.7514	HNF4A_NR2F1,2.p2	AK046881|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK046797|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	NM_177304|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079642|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079352|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK038460|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	BC096376|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm9_v1_chr7_-_135349828_135349880	2.70522	HNF4A_NR2F1,2.p2	AK002506|Cox6a2|12862|cytochrome c oxidase, subunit VI a, polypeptide 2	BC028514|Cox6a2|12862|cytochrome c oxidase, subunit VI a, polypeptide 2	U08439|Cox6a2|12862|cytochrome c oxidase, subunit VI a, polypeptide 2	NM_009943|Cox6a2|12862|cytochrome c oxidase, subunit VI a, polypeptide 2
mm9_v1_chr13_+_43493729_43493803	2.69083	HNF4A_NR2F1,2.p2	NM_023554|Nol7|70078|nucleolar protein 7	AK008670|Nol7|70078|nucleolar protein 7	AK019972|Nol7|70078|nucleolar protein 7	AB041566|Nol7|70078|nucleolar protein 7	AK032963|Nol7|70078|nucleolar protein 7	BC130012|Nol7|70078|nucleolar protein 7	BC090637|Nol7|70078|nucleolar protein 7
mm9_v1_chr14_+_14117313_14117372	2.61509	HNF4A_NR2F1,2.p2	BC026512|Synpr|72003|synaptoporin	AK005132|Synpr|72003|synaptoporin
mm9_v1_chr11_-_102226419_102226465	2.60294	HNF4A_NR2F1,2.p2	M29379|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK010967|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK171808|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	BC053429|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AY296129|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	X02677|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	BC052419|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172316|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158453|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK162616|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172569|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK157833|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK165195|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK165267|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172103|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK157861|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158243|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1
mm9_v1_chr17_+_34987323_34987445	2.59953	HNF4A_NR2F1,2.p2	NM_001045863|Rdbp|27632|RD RNA-binding protein	NM_001045864|Rdbp|27632|RD RNA-binding protein	NM_138580|Rdbp|27632|RD RNA-binding protein	AK011663|Rdbp|27632|RD RNA-binding protein	AK131947|Rdbp|27632|RD RNA-binding protein	AK147011|Rdbp|27632|RD RNA-binding protein	BC034867|Rdbp|27632|RD RNA-binding protein	AK012389|Rdbp|27632|RD RNA-binding protein
mm9_v1_chr14_+_70857227_70857399	2.59101	HNF4A_NR2F1,2.p2	AK049900|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	NM_145981|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC030494|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein	BC139360|Phyhip|105653|phytanoyl-CoA hydroxylase interacting protein
mm9_v1_chr7_-_29383178_29383179	2.58647	HNF4A_NR2F1,2.p2	AK088512|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4
mm9_v1_chr7_-_29383163_29383177	2.54446	HNF4A_NR2F1,2.p2	BC048238|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4
mm9_v1_chr6_-_128476708_128476738	2.47015	HNF4A_NR2F1,2.p2	M93264|Pzp|11287|pregnancy zone protein	NM_007376|Pzp|11287|pregnancy zone protein
mm9_v1_chr2_+_58998885_58998932	2.40552	HNF4A_NR2F1,2.p2	AK146720|Pkp4|227937|plakophilin 4	NM_026361|Pkp4|227937|plakophilin 4	NM_175464|Pkp4|227937|plakophilin 4
mm9_v1_chr4_+_126234210_126234268	2.39881	HNF4A_NR2F1,2.p2	AK053847|Clspn|269582|claspin homolog (Xenopus laevis)	NM_175554|Clspn|269582|claspin homolog (Xenopus laevis)	AK045076|Clspn|269582|claspin homolog (Xenopus laevis)	AK135394|Clspn|269582|claspin homolog (Xenopus laevis)	AK051966|Clspn|269582|claspin homolog (Xenopus laevis)	BC050848|Clspn|269582|claspin homolog (Xenopus laevis)
mm9_v1_chr19_+_8692485_8692668	2.39412	HNF4A_NR2F1,2.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chr3_-_8923789_8923856	2.39143	HNF4A_NR2F1,2.p2	AK088314|Mrps28|66230|mitochondrial ribosomal protein S28	AK011036|Mrps28|66230|mitochondrial ribosomal protein S28	BC028530|Mrps28|66230|mitochondrial ribosomal protein S28	AK005229|Mrps28|66230|mitochondrial ribosomal protein S28	NM_025434|Mrps28|66230|mitochondrial ribosomal protein S28
mm9_v1_chr1_+_141351340_141351508	2.38827	HNF4A_NR2F1,2.p2	AK052326|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	NM_009791|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK050785|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AF533752|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK083710|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK079744|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AK052515|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)	AY971958|Aspm|12316|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm9_v1_chr7_-_29383180_29383213	2.37812	HNF4A_NR2F1,2.p2	AK129298|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4	NM_027470|Pak4|70584|p21 protein (Cdc42/Rac)-activated kinase 4
mm9_v1_chr19_+_5088537_5088585	2.36096	HNF4A_NR2F1,2.p2	AK011071|Yif1a|68090|Yip1 interacting factor homolog A (S. cerevisiae)	AK077329|Yif1a|68090|Yip1 interacting factor homolog A (S. cerevisiae)	NM_026553|Yif1a|68090|Yip1 interacting factor homolog A (S. cerevisiae)	AK160409|Yif1a|68090|Yip1 interacting factor homolog A (S. cerevisiae)
mm9_v1_chr7_+_129432810_129432849	2.30478	HNF4A_NR2F1,2.p2	X53532|Prkcb|18751|protein kinase C, beta	BC127083|Prkcb|18751|protein kinase C, beta	X59274|Prkcb|18751|protein kinase C, beta
mm9_v1_chr13_-_94407455_94407526	2.30392	HNF4A_NR2F1,2.p2	AF033381|Bhmt|12116|betaine-homocysteine methyltransferase	BC093510|Bhmt|12116|betaine-homocysteine methyltransferase	BC037004|Bhmt|12116|betaine-homocysteine methyltransferase	AK077108|Bhmt|12116|betaine-homocysteine methyltransferase	AK149457|Bhmt|12116|betaine-homocysteine methyltransferase	AK166818|Bhmt|12116|betaine-homocysteine methyltransferase	AK149431|Bhmt|12116|betaine-homocysteine methyltransferase	AK166754|Bhmt|12116|betaine-homocysteine methyltransferase
mm9_v1_chr10_-_20444654_20444883	2.2875	HNF4A_NR2F1,2.p2	AF190639|Pde7b|29863|phosphodiesterase 7B	BC130267|Pde7b|29863|phosphodiesterase 7B	AK020137|Pde7b|29863|phosphodiesterase 7B	AK040876|Pde7b|29863|phosphodiesterase 7B	NM_013875|Pde7b|29863|phosphodiesterase 7B	AK035385|Pde7b|29863|phosphodiesterase 7B
mm9_v1_chr16_+_22951183_22951214	2.27227	HNF4A_NR2F1,2.p2	AY135662|Hrg|94175|histidine-rich glycoprotein	AB055897|Hrg|94175|histidine-rich glycoprotein	BC011168|Hrg|94175|histidine-rich glycoprotein	AF194028|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr8_-_73183546_73183566	2.27112	HNF4A_NR2F1,2.p2	BC043041|Pgpep1|66522|pyroglutamyl-peptidase I	AK049632|Pgpep1|66522|pyroglutamyl-peptidase I	AJ278829|Pgpep1|66522|pyroglutamyl-peptidase I	BC051938|Pgpep1|66522|pyroglutamyl-peptidase I	AK012658|Pgpep1|66522|pyroglutamyl-peptidase I
mm9_v1_chr10_-_128397928_128398043	2.25762	HNF4A_NR2F1,2.p2	BC024898|Mettl7b|71664|methyltransferase like 7B	AK002239|Mettl7b|71664|methyltransferase like 7B	NM_027853|Mettl7b|71664|methyltransferase like 7B
mm9_v1_chr8_-_74061134_74061382	2.25475	HNF4A_NR2F1,2.p2	AK009361|Bst2|69550|bone marrow stromal cell antigen 2	AK154399|Bst2|69550|bone marrow stromal cell antigen 2	BC087949|Bst2|69550|bone marrow stromal cell antigen 2	BC056638|Bst2|69550|bone marrow stromal cell antigen 2	NM_198095|Bst2|69550|bone marrow stromal cell antigen 2
mm9_v1_chr4_-_131978279_131978374	2.25453	HNF4A_NR2F1,2.p2	BC096033|Phactr4|100169|phosphatase and actin regulator 4	AK049209|Phactr4|100169|phosphatase and actin regulator 4	BC075672|Phactr4|100169|phosphatase and actin regulator 4	AK220496|Phactr4|100169|phosphatase and actin regulator 4	NM_001161797|Phactr4|100169|phosphatase and actin regulator 4	NM_175306|Phactr4|100169|phosphatase and actin regulator 4
mm9_v1_chr11_-_102758460_102758513	2.25023	HNF4A_NR2F1,2.p2	BC139357|Gfap|14580|glial fibrillary acidic protein	BC139358|Gfap|14580|glial fibrillary acidic protein	NM_001131020|Gfap|14580|glial fibrillary acidic protein	NM_010277|Gfap|14580|glial fibrillary acidic protein
mm9_v1_chr17_-_71351465_71351521	2.23877	HNF4A_NR2F1,2.p2	BC089050|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	BC029180|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene	AK028020|2900073G15Rik|67268|RIKEN cDNA 2900073G15 gene
mm9_v1_chr3_-_107499129_107499327	2.22511	HNF4A_NR2F1,2.p2	AB092504|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1	BC018218|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr11_-_106134024_106134359	2.21554	HNF4A_NR2F1,2.p2	AK166123|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	AK159259|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	NM_001130187|Smarcd2|83796|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm9_v1_chr9_+_20673069_20673163	2.21067	HNF4A_NR2F1,2.p2	BC031510|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	NM_175687|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	AK157146|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	AK149161|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene	BC043448|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr17_+_45692647_45692701	2.20895	HNF4A_NR2F1,2.p2	AK008843|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151450|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151692|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK011965|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	BC030923|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	NM_008690|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK153248|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK088585|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon
mm9_v1_chr6_+_34304098_34304193	2.18317	HNF4A_NR2F1,2.p2	NM_008012|Akr1b8|14187|aldo-keto reductase family 1, member B8	U04204|Akr1b8|14187|aldo-keto reductase family 1, member B8	BC005789|Akr1b8|14187|aldo-keto reductase family 1, member B8
mm9_v1_chr9_+_120058842_120058868	2.14473	HNF4A_NR2F1,2.p2	AK013799|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK019323|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK028057|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK083103|Mobp|17433|myelin-associated oligodendrocytic basic protein	AK140055|Mobp|17433|myelin-associated oligodendrocytic basic protein	BC048492|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039364|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_001039365|Mobp|17433|myelin-associated oligodendrocytic basic protein	NM_008614|Mobp|17433|myelin-associated oligodendrocytic basic protein
mm9_v1_chr11_+_78312621_78312770	2.13331	HNF4A_NR2F1,2.p2	NM_011707|Vtn|22370|vitronectin	AK011736|Vtn|22370|vitronectin	AK090325|Vtn|22370|vitronectin	AK167494|Vtn|22370|vitronectin
mm9_v1_chr7_-_52359079_52359191	2.13198	HNF4A_NR2F1,2.p2	BC003786|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	D37874|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK152879|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK146933|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008167|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	AK008360|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter	NM_010189|Fcgrt|14132|Fc receptor, IgG, alpha chain transporter
mm9_v1_chr17_-_34999068_34999191	2.11333	HNF4A_NR2F1,2.p2	AK149531|Cfb|14962|complement factor B	BC005451|Cfb|14962|complement factor B	AK098094|Cfb|14962|complement factor B	AK149573|Cfb|14962|complement factor B	M57890|Cfb|14962|complement factor B	AK151246|Cfb|14962|complement factor B
mm9_v1_chr17_-_45729199_45729441	2.11097	HNF4A_NR2F1,2.p2	EU180577|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	BC006812|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AF131212|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	NM_022880|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr5_+_124889925_124890006	2.10266	HNF4A_NR2F1,2.p2	NM_030241|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK030904|Setd8|67956|SET domain containing (lysine methyltransferase) 8	AK088097|Setd8|67956|SET domain containing (lysine methyltransferase) 8	BC108333|Setd8|67956|SET domain containing (lysine methyltransferase) 8
mm9_v1_chr15_+_98905403_98905455	2.1014	HNF4A_NR2F1,2.p2	NM_001162506|Troap|78733|trophinin associated protein	NM_030159|Troap|78733|trophinin associated protein	AK050381|Troap|78733|trophinin associated protein	AK077509|Troap|78733|trophinin associated protein	AK021408|Troap|78733|trophinin associated protein	BC100405|Troap|78733|trophinin associated protein	BC080746|Troap|78733|trophinin associated protein
mm9_v1_chr9_+_44142772_44142803	2.09539	HNF4A_NR2F1,2.p2	AK088040|H2afx|15270|H2A histone family, member X	AK008124|H2afx|15270|H2A histone family, member X	X58069|H2afx|15270|H2A histone family, member X	BC010336|H2afx|15270|H2A histone family, member X	NM_010436|H2afx|15270|H2A histone family, member X	BC005468|H2afx|15270|H2A histone family, member X
mm9_v1_chr4_+_130168140_130168255	2.07042	HNF4A_NR2F1,2.p2	AK009389|Nkain1|67149|Na+/K+ transporting ATPase interacting 1	AK160181|Nkain1|67149|Na+/K+ transporting ATPase interacting 1
mm9_v1_chr6_+_124780193_124780220	2.05105	HNF4A_NR2F1,2.p2	NM_013538|Cdca3|14793|cell division cycle associated 3	AK011313|Cdca3|14793|cell division cycle associated 3
mm9_v1_chr16_+_30599808_30599823	2.04075	HNF4A_NR2F1,2.p2	AK083036|Fam43a|224093|family with sequence similarity 43, member A	NM_177632|Fam43a|224093|family with sequence similarity 43, member A	AK137950|Fam43a|224093|family with sequence similarity 43, member A	BC099947|Fam43a|224093|family with sequence similarity 43, member A
mm9_v1_chr10_+_127528632_127528696	2.01698	HNF4A_NR2F1,2.p2	AK140355|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	AK155523|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	AK035400|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC020083|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr14_+_14117292_14117302	2.01046	HNF4A_NR2F1,2.p2	AK078223|Synpr|72003|synaptoporin	NM_028052|Synpr|72003|synaptoporin
mm9_v1_chr7_-_20266749_20266811	1.99375	HNF4A_NR2F1,2.p2	BC016889|Apoc4|11425|apolipoprotein C-IV	BC024657|Apoc4|11425|apolipoprotein C-IV	NM_007385|Apoc4|11425|apolipoprotein C-IV	BC100593|Apoc4|11425|apolipoprotein C-IV
mm9_v1_chr10_-_118677059_118677116	1.99251	HNF4A_NR2F1,2.p2	AK129225|Cand1|71902|cullin associated and neddylation disassociated 1	AK144869|Cand1|71902|cullin associated and neddylation disassociated 1	AK158080|Cand1|71902|cullin associated and neddylation disassociated 1	NM_027994|Cand1|71902|cullin associated and neddylation disassociated 1
mm9_v1_chr11_+_98902556_98902703	1.98746	HNF4A_NR2F1,2.p2	AK031212|Igfbp4|16010|insulin-like growth factor binding protein 4	AK150229|Igfbp4|16010|insulin-like growth factor binding protein 4	AK165688|Igfbp4|16010|insulin-like growth factor binding protein 4	NM_010517|Igfbp4|16010|insulin-like growth factor binding protein 4	BC019836|Igfbp4|16010|insulin-like growth factor binding protein 4	X81582|Igfbp4|16010|insulin-like growth factor binding protein 4
mm9_v1_chr7_-_149843316_149843387	1.98485	HNF4A_NR2F1,2.p2	M14951|Igf2|16002|insulin-like growth factor 2	BC058615|Igf2|16002|insulin-like growth factor 2	BC053489|Igf2|16002|insulin-like growth factor 2	NM_001122737|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr12_+_113883038_113883233	1.97372	HNF4A_NR2F1,2.p2	NM_001161737|Siva1|30954|SIVA1, apoptosis-inducing factor	NM_013929|Siva1|30954|SIVA1, apoptosis-inducing factor	BC012279|Siva1|30954|SIVA1, apoptosis-inducing factor	AK017570|Siva1|30954|SIVA1, apoptosis-inducing factor	AK169200|Siva1|30954|SIVA1, apoptosis-inducing factor	AK153115|Siva1|30954|SIVA1, apoptosis-inducing factor	AF033112|Siva1|30954|SIVA1, apoptosis-inducing factor	AF033113|Siva1|30954|SIVA1, apoptosis-inducing factor	AK184852|Siva1|30954|SIVA1, apoptosis-inducing factor	AK209128|Siva1|30954|SIVA1, apoptosis-inducing factor	AK212226|Siva1|30954|SIVA1, apoptosis-inducing factor
mm9_v1_chr7_+_50699457_50699514	1.96615	HNF4A_NR2F1,2.p2	AK013284|Etfb|110826|electron transferring flavoprotein, beta polypeptide	BC069877|Etfb|110826|electron transferring flavoprotein, beta polypeptide	AK002407|Etfb|110826|electron transferring flavoprotein, beta polypeptide	AK150293|Etfb|110826|electron transferring flavoprotein, beta polypeptide	BC049237|Etfb|110826|electron transferring flavoprotein, beta polypeptide	NM_026695|Etfb|110826|electron transferring flavoprotein, beta polypeptide
mm9_v1_chr4_-_116855158_116855228	1.95456	HNF4A_NR2F1,2.p2	AK150222|Kif2c|73804|kinesin family member 2C	AK088047|Kif2c|73804|kinesin family member 2C	BC006841|Kif2c|73804|kinesin family member 2C	AK015046|Kif2c|73804|kinesin family member 2C	NM_134471|Kif2c|73804|kinesin family member 2C
mm9_v1_chr10_-_120913138_120913382	1.94801	HNF4A_NR2F1,2.p2	AK167627|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AF332864|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC011511|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	NM_138956|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC071204|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AK155495|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC055023|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3
mm9_v1_chr19_+_12708001_12708022	1.94205	HNF4A_NR2F1,2.p2	AK143803|Glyat|107146|glycine-N-acyltransferase	AK143901|Glyat|107146|glycine-N-acyltransferase	BC010799|Glyat|107146|glycine-N-acyltransferase	BC015294|Glyat|107146|glycine-N-acyltransferase
mm9_v1_chr15_-_82237600_82237628	1.94057	HNF4A_NR2F1,2.p2	BC051039|Cyp2d10|13101|cytochrome P450, family 2, subfamily d, polypeptide 10	M27167|Cyp2d10|13101|cytochrome P450, family 2, subfamily d, polypeptide 10	BC057924|Cyp2d10|13101|cytochrome P450, family 2, subfamily d, polypeptide 10	BC010989|Cyp2d10|13101|cytochrome P450, family 2, subfamily d, polypeptide 10	NM_010005|Cyp2d10|13101|cytochrome P450, family 2, subfamily d, polypeptide 10	NM_010005|Cyp2d10|13101|cytochrome P450, family 2, subfamily d, polypeptide 10
mm9_v1_chr2_-_91771836_91771855	1.92785	HNF4A_NR2F1,2.p2	M19662|Mdk|17242|midkine	NM_001012335|Mdk|17242|midkine
mm9_v1_chr6_+_90283246_90283309	1.89724	HNF4A_NR2F1,2.p2	AK149464|Uroc1|243537|urocanase domain containing 1	NM_144940|Uroc1|243537|urocanase domain containing 1	BC022133|Uroc1|243537|urocanase domain containing 1
mm9_v1_chr10_+_93610663_93610767	1.88935	HNF4A_NR2F1,2.p2	AK146891|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	NM_011629|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	AK053907|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	BC090662|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	BC094580|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1	AK149374|Nr2c1|22025|nuclear receptor subfamily 2, group C, member 1
mm9_v1_chr1_-_134603848_134603902	1.8792	HNF4A_NR2F1,2.p2	AK129207|Nfasc|269116|neurofascin	NM_001160318|Nfasc|269116|neurofascin
mm9_v1_chr2_+_35477568_35477592	1.8645	HNF4A_NR2F1,2.p2	AK147464|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	AK164475|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr9_-_22193627_22193649	1.82996	HNF4A_NR2F1,2.p2	NM_028390|Anln|68743|anillin, actin binding protein
mm9_v1_chr3_+_98084352_98084426	1.81434	HNF4A_NR2F1,2.p2	NM_008256|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004865|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004902|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK098104|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC014714|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC024744|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm9_v1_chr2_-_91476551_91476600	1.79354	HNF4A_NR2F1,2.p2	AK050056|F2|14061|coagulation factor II	AK167532|F2|14061|coagulation factor II	AK149367|F2|14061|coagulation factor II	BC013662|F2|14061|coagulation factor II	NM_010168|F2|14061|coagulation factor II	X52308|F2|14061|coagulation factor II
mm9_v1_chr13_+_93125151_93125213	1.78321	HNF4A_NR2F1,2.p2	L26316|Dhfr|13361|dihydrofolate reductase	BC005796|Dhfr|13361|dihydrofolate reductase	X56066|Dhfr|13361|dihydrofolate reductase	M10722|Dhfr|13361|dihydrofolate reductase
mm9_v1_chr3_+_95086814_95087156	1.75619	HNF4A_NR2F1,2.p2	NM_133858|Fam63a|75007|family with sequence similarity 63, member A	NM_199475|Fam63a|75007|family with sequence similarity 63, member A	AK169673|Fam63a|75007|family with sequence similarity 63, member A	AK036838|Fam63a|75007|family with sequence similarity 63, member A	BC094388|Fam63a|75007|family with sequence similarity 63, member A	AK087859|Fam63a|75007|family with sequence similarity 63, member A	AK162551|Fam63a|75007|family with sequence similarity 63, member A
mm9_v1_chr15_+_81641869_81641976	1.75512	HNF4A_NR2F1,2.p2	AK145125|Tef|21685|thyrotroph embryonic factor	AK154472|Tef|21685|thyrotroph embryonic factor	BC036982|Tef|21685|thyrotroph embryonic factor	AF194420|Tef|21685|thyrotroph embryonic factor	AK147965|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr11_-_78798332_78798435	1.75292	HNF4A_NR2F1,2.p2	U55061|Lgals9|16859|lectin, galactose binding, soluble 9	U55060|Lgals9|16859|lectin, galactose binding, soluble 9	BC003754|Lgals9|16859|lectin, galactose binding, soluble 9	AK146044|Lgals9|16859|lectin, galactose binding, soluble 9	NM_001159301|Lgals9|16859|lectin, galactose binding, soluble 9	NM_010708|Lgals9|16859|lectin, galactose binding, soluble 9
mm9_v1_chr5_+_38430461_38430564	1.73397	HNF4A_NR2F1,2.p2	AK007700|Stx18|71116|syntaxin 18	AK170165|Stx18|71116|syntaxin 18	NM_026959|Stx18|71116|syntaxin 18	BC021362|Stx18|71116|syntaxin 18	AK169273|Stx18|71116|syntaxin 18	AK016910|Stx18|71116|syntaxin 18
mm9_v1_chr7_-_134160841_134160854	1.70811	HNF4A_NR2F1,2.p2	AK013840|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chr9_-_57531452_57531467	1.68346	HNF4A_NR2F1,2.p2	BC054827|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	K02589|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	NM_009993|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	X00479|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr6_+_83087016_83087103	1.67992	HNF4A_NR2F1,2.p2	NM_009106|Rtkn|20166|rhotekin	NM_133641|Rtkn|20166|rhotekin	U54638|Rtkn|20166|rhotekin	BC013820|Rtkn|20166|rhotekin
mm9_v1_chr12_+_37968225_37968446	1.67585	HNF4A_NR2F1,2.p2	AK040702|Tmem195|319660|transmembrane protein 195	NM_178767|Tmem195|319660|transmembrane protein 195	BC038044|Tmem195|319660|transmembrane protein 195	AK050246|Tmem195|319660|transmembrane protein 195	AK163155|Tmem195|319660|transmembrane protein 195
mm9_v1_chr8_-_54724277_54724418	1.67119	HNF4A_NR2F1,2.p2	BC024921|Neil3|234258|nei like 3 (E. coli)	AB072931|Neil3|234258|nei like 3 (E. coli)	AK031027|Neil3|234258|nei like 3 (E. coli)	BC034753|Neil3|234258|nei like 3 (E. coli)	NM_146208|Neil3|234258|nei like 3 (E. coli)
mm9_v1_chr9_-_22193577_22193613	1.66916	HNF4A_NR2F1,2.p2	BC027141|Anln|68743|anillin, actin binding protein
mm9_v1_chr19_-_3912710_3912721	1.66331	HNF4A_NR2F1,2.p2	AK153182|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8	NM_144870|Ndufs8|225887|NADH dehydrogenase (ubiquinone) Fe-S protein 8
mm9_v1_chrX_+_9829439_9829558	1.6614	HNF4A_NR2F1,2.p2	AK050930|Otc|18416|ornithine transcarbamylase	NM_008769|Otc|18416|ornithine transcarbamylase	BC024893|Otc|18416|ornithine transcarbamylase	M17030|Otc|18416|ornithine transcarbamylase
mm9_v1_chr17_-_35804498_35804538	1.64206	HNF4A_NR2F1,2.p2	AK155386|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	AK129008|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	NM_175137|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr17_-_27075896_27076239	1.61998	HNF4A_NR2F1,2.p2	AK181681|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK187338|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC037500|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC021463|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr1_-_167932735_167932770	1.61395	HNF4A_NR2F1,2.p2	X68363|Pou2f1|18986|POU domain, class 2, transcription factor 1	X68362|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489477|Pou2f1|18986|POU domain, class 2, transcription factor 1	AJ489478|Pou2f1|18986|POU domain, class 2, transcription factor 1	BC066201|Pou2f1|18986|POU domain, class 2, transcription factor 1	X68364|Pou2f1|18986|POU domain, class 2, transcription factor 1	AF508939|Pou2f1|18986|POU domain, class 2, transcription factor 1	AY177625|Pou2f1|18986|POU domain, class 2, transcription factor 1	AK044830|Pou2f1|18986|POU domain, class 2, transcription factor 1	AK028237|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_011137|Pou2f1|18986|POU domain, class 2, transcription factor 1	NM_198932|Pou2f1|18986|POU domain, class 2, transcription factor 1
mm9_v1_chr2_-_113688771_113688881	1.61167	HNF4A_NR2F1,2.p2	BC050875|Arhgap11a|228482|Rho GTPase activating protein 11A	AK129034|Arhgap11a|228482|Rho GTPase activating protein 11A	BC058105|Arhgap11a|228482|Rho GTPase activating protein 11A	NM_181416|Arhgap11a|228482|Rho GTPase activating protein 11A	AK162074|Arhgap11a|228482|Rho GTPase activating protein 11A
mm9_v1_chr5_-_115569276_115569358	1.61088	HNF4A_NR2F1,2.p2	L11163|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	AK169428|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	BC055063|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	BC016259|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	NM_007383|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain	AK155361|Acads|11409|acyl-Coenzyme A dehydrogenase, short chain
mm9_v1_chr19_-_44481898_44481917	1.61005	HNF4A_NR2F1,2.p2	CT010171|Scd1|20249|stearoyl-Coenzyme A desaturase 1	CT010332|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr4_+_131429522_131429622	1.60883	HNF4A_NR2F1,2.p2	NM_020587|Srsf4|57317|serine/arginine-rich splicing factor 4	AK077648|Srsf4|57317|serine/arginine-rich splicing factor 4	AK075769|Srsf4|57317|serine/arginine-rich splicing factor 4	BC019437|Srsf4|57317|serine/arginine-rich splicing factor 4	AK156989|Srsf4|57317|serine/arginine-rich splicing factor 4
mm9_v1_chr3_-_79432487_79432704	1.59857	HNF4A_NR2F1,2.p2	AK187002|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK181850|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK169686|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK037969|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	BC057670|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK002483|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	BC012522|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK028686|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK075673|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK141684|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK085493|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	AK152624|Etfdh|66841|electron transferring flavoprotein, dehydrogenase	NM_025794|Etfdh|66841|electron transferring flavoprotein, dehydrogenase
mm9_v1_chr9_-_63247025_63247103	1.59265	HNF4A_NR2F1,2.p2	BC100363|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116242|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	BC116243|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK054471|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK009046|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	AK158428|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene	NM_027090|2300009A05Rik|69478|RIKEN cDNA 2300009A05 gene
mm9_v1_chr2_+_155212676_155212898	1.5837	HNF4A_NR2F1,2.p2	AK186401|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK195529|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK196103|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212608|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr8_-_73183574_73183581	1.58225	HNF4A_NR2F1,2.p2	AK003373|Pgpep1|66522|pyroglutamyl-peptidase I	AK047835|Pgpep1|66522|pyroglutamyl-peptidase I	NM_023217|Pgpep1|66522|pyroglutamyl-peptidase I
mm9_v1_chr17_-_27957398_27957565	1.57865	HNF4A_NR2F1,2.p2	AK143016|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK165011|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK161603|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132324|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC132326|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137573|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC137576|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	BC145403|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001033279|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	NM_001044719|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed
mm9_v1_chr10_+_126504125_126504226	1.57799	HNF4A_NR2F1,2.p2	
mm9_v1_chr1_-_134036041_134036303	1.57783	HNF4A_NR2F1,2.p2	AK171569|Cdk18|18557|cyclin-dependent kinase 18	BC119617|Cdk18|18557|cyclin-dependent kinase 18	BC119618|Cdk18|18557|cyclin-dependent kinase 18	AK004998|Cdk18|18557|cyclin-dependent kinase 18	X69026|Cdk18|18557|cyclin-dependent kinase 18	NM_008795|Cdk18|18557|cyclin-dependent kinase 18
mm9_v1_chrX_+_133357268_133357438	1.56642	HNF4A_NR2F1,2.p2	AK160872|Plp1|18823|proteolipid protein (myelin) 1	AK134554|Plp1|18823|proteolipid protein (myelin) 1	M15442|Plp1|18823|proteolipid protein (myelin) 1	AK077564|Plp1|18823|proteolipid protein (myelin) 1	BC027010|Plp1|18823|proteolipid protein (myelin) 1	NM_011123|Plp1|18823|proteolipid protein (myelin) 1	AK192772|Plp1|18823|proteolipid protein (myelin) 1	AK203421|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr4_-_131901576_131901664	1.55949	HNF4A_NR2F1,2.p2	BC019807|Rcc1|100088|regulator of chromosome condensation 1	AK155225|Rcc1|100088|regulator of chromosome condensation 1	AK150610|Rcc1|100088|regulator of chromosome condensation 1	AK153193|Rcc1|100088|regulator of chromosome condensation 1	AK153994|Rcc1|100088|regulator of chromosome condensation 1	AK150153|Rcc1|100088|regulator of chromosome condensation 1	BC057645|Rcc1|100088|regulator of chromosome condensation 1	AK076089|Rcc1|100088|regulator of chromosome condensation 1	NM_001197082|Rcc1|100088|regulator of chromosome condensation 1	NM_133878|Rcc1|100088|regulator of chromosome condensation 1
mm9_v1_chrM_+_3320_3438	1.54095	HNF4A_NR2F1,2.p2	
mm9_v1_chr14_+_122933560_122933681	1.52826	HNF4A_NR2F1,2.p2	AK148002|Pcca|110821|propionyl-Coenzyme A carboxylase, alpha polypeptide	BC006915|Pcca|110821|propionyl-Coenzyme A carboxylase, alpha polypeptide	BC049802|Pcca|110821|propionyl-Coenzyme A carboxylase, alpha polypeptide	AK183916|Pcca|110821|propionyl-Coenzyme A carboxylase, alpha polypeptide	AK212580|Pcca|110821|propionyl-Coenzyme A carboxylase, alpha polypeptide
mm9_v1_chr7_-_87080143_87080213	1.50942	HNF4A_NR2F1,2.p2	BC031379|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK051261|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	NM_027420|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK039350|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK011654|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene	AK156013|2610034B18Rik|70420|RIKEN cDNA 2610034B18 gene
mm9_v1_chr1_-_157659936_157660032	1.50754	HNF4A_NR2F1,2.p2	AB044284|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK170449|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK171127|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK149465|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK163119|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK004880|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK166839|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK169920|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK083938|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	AK169877|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	BC076590|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	NM_001024945|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1	NM_023268|Qsox1|104009|quiescin Q6 sulfhydryl oxidase 1
mm9_v1_chr2_-_92232506_92232632	1.49705	HNF4A_NR2F1,2.p2	AF109769|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109770|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109771|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr7_+_29572956_29573056	1.49251	HNF4A_NR2F1,2.p2	AK187075|Sirt2|64383|sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)
mm9_v1_chr15_-_86044710_86044826	1.48739	HNF4A_NR2F1,2.p2	AK012625|2810001A02Rik|72146|RIKEN cDNA 2810001A02 gene
mm9_v1_chr3_+_87752614_87752658	1.47459	HNF4A_NR2F1,2.p2	NM_007759|Crabp2|12904|cellular retinoic acid binding protein II	BC018397|Crabp2|12904|cellular retinoic acid binding protein II	M35523|Crabp2|12904|cellular retinoic acid binding protein II
mm9_v1_chr8_+_71404491_71404740	1.4612	HNF4A_NR2F1,2.p2	M65258|Lpl|16956|lipoprotein lipase	AK002645|Lpl|16956|lipoprotein lipase	AK151369|Lpl|16956|lipoprotein lipase	AK151434|Lpl|16956|lipoprotein lipase	AK151521|Lpl|16956|lipoprotein lipase	AK150672|Lpl|16956|lipoprotein lipase	AK089473|Lpl|16956|lipoprotein lipase	AK151038|Lpl|16956|lipoprotein lipase	AK151195|Lpl|16956|lipoprotein lipase	AK151630|Lpl|16956|lipoprotein lipase	AK152733|Lpl|16956|lipoprotein lipase	AK151774|Lpl|16956|lipoprotein lipase	AK152400|Lpl|16956|lipoprotein lipase	AK150457|Lpl|16956|lipoprotein lipase	AK151893|Lpl|16956|lipoprotein lipase	AK045064|Lpl|16956|lipoprotein lipase	AK079446|Lpl|16956|lipoprotein lipase	AK151540|Lpl|16956|lipoprotein lipase	AK151801|Lpl|16956|lipoprotein lipase	AK151828|Lpl|16956|lipoprotein lipase	AK152053|Lpl|16956|lipoprotein lipase	AK152390|Lpl|16956|lipoprotein lipase	BC158040|Lpl|16956|lipoprotein lipase	AK170106|Lpl|16956|lipoprotein lipase	AK086023|Lpl|16956|lipoprotein lipase	CT010344|Lpl|16956|lipoprotein lipase	J03302|Lpl|16956|lipoprotein lipase
mm9_v1_chr1_+_159342882_159342921	1.45778	HNF4A_NR2F1,2.p2	BC055878|2810025M15Rik|69953|RIKEN cDNA 2810025M15 gene	AK012812|2810025M15Rik|69953|RIKEN cDNA 2810025M15 gene
mm9_v1_chr11_+_74462965_74463046	1.45587	HNF4A_NR2F1,2.p2	AK145708|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK157310|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154925|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	NM_001081158|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK154146|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK036540|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	AK150045|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene	BC072573|1300001I01Rik|74148|RIKEN cDNA 1300001I01 gene
mm9_v1_chr2_+_153171730_153171874	1.45552	HNF4A_NR2F1,2.p2	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr9_-_63225395_63225495	1.44621	HNF4A_NR2F1,2.p2	AK182797|Map2k5|23938|mitogen-activated protein kinase kinase 5
mm9_v1_chr5_-_108863376_108863419	1.43557	HNF4A_NR2F1,2.p2	S52977|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	BC089550|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	BC028438|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	NM_007507|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e	AK011342|Atp5k|11958|ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e
mm9_v1_chr4_-_117169519_117169656	1.43504	HNF4A_NR2F1,2.p2	BC056359|Rnf220|66743|ring finger protein 220	BC058415|Rnf220|66743|ring finger protein 220	NM_025739|Rnf220|66743|ring finger protein 220	AK028975|Rnf220|66743|ring finger protein 220	AK041785|Rnf220|66743|ring finger protein 220
mm9_v1_chr5_+_21049368_21049436	1.42697	HNF4A_NR2F1,2.p2	AK014767|Lrrc17|74511|leucine rich repeat containing 17	AK018071|Lrrc17|74511|leucine rich repeat containing 17	BC030317|Lrrc17|74511|leucine rich repeat containing 17
mm9_v1_chr6_-_35258102_35258131	1.41594	HNF4A_NR2F1,2.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr7_-_90883999_90884032	1.41476	HNF4A_NR2F1,2.p2	AF175292|Il16|16170|interleukin 16	NM_010551|Il16|16170|interleukin 16	AK220455|Il16|16170|interleukin 16	BC058709|Il16|16170|interleukin 16
mm9_v1_chr11_-_69392727_69392825	1.41145	HNF4A_NR2F1,2.p2	AK077570|Wrap53|216853|WD repeat containing, antisense to TP53	AK169271|Wrap53|216853|WD repeat containing, antisense to TP53	AK145219|Wrap53|216853|WD repeat containing, antisense to TP53	BC021790|Wrap53|216853|WD repeat containing, antisense to TP53	NM_144824|Wrap53|216853|WD repeat containing, antisense to TP53
mm9_v1_chr8_-_88079141_88079168	1.41079	HNF4A_NR2F1,2.p2	AB028853|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2	AK163255|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr18_+_36823713_36823835	1.41022	HNF4A_NR2F1,2.p2	BC061242|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	NM_201256|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC111107|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	BC038258|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3	AY226182|Eif4ebp3|108112|eukaryotic translation initiation factor 4E binding protein 3
mm9_v1_chr7_+_52003841_52004004	1.404	HNF4A_NR2F1,2.p2	AK150435|Vrk3|101568|vaccinia related kinase 3	AK171673|Vrk3|101568|vaccinia related kinase 3	BC024839|Vrk3|101568|vaccinia related kinase 3	NM_133945|Vrk3|101568|vaccinia related kinase 3	BC027129|Vrk3|101568|vaccinia related kinase 3
mm9_v1_chr3_-_27052733_27052775	1.40182	HNF4A_NR2F1,2.p2	AK040174|Ect2|13605|ect2 oncogene	BC045614|Ect2|13605|ect2 oncogene	BC025565|Ect2|13605|ect2 oncogene	BC032155|Ect2|13605|ect2 oncogene	BC023881|Ect2|13605|ect2 oncogene	AK157718|Ect2|13605|ect2 oncogene	L11316|Ect2|13605|ect2 oncogene	AK220452|Ect2|13605|ect2 oncogene	NM_001177625|Ect2|13605|ect2 oncogene	NM_007900|Ect2|13605|ect2 oncogene
mm9_v1_chr5_+_135663405_135663452	1.40036	HNF4A_NR2F1,2.p2	AK140172|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	AK141305|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B
mm9_v1_chr7_+_86644936_86645002	1.39256	HNF4A_NR2F1,2.p2	AK032343|AI854517|101694|expressed sequence AI854517
mm9_v1_chr11_-_8564514_8564596	1.37824	HNF4A_NR2F1,2.p2	AK052680|Tns3|319939|tensin 3	AK089717|Tns3|319939|tensin 3	NM_001083587|Tns3|319939|tensin 3
mm9_v1_chr9_-_121825422_121825428	1.37159	HNF4A_NR2F1,2.p2	NM_010012|Cyp8b1|13124|cytochrome P450, family 8, subfamily b, polypeptide 1
mm9_v1_chr5_+_65194749_65194773	1.36455	HNF4A_NR2F1,2.p2	AK143838|Klf3|16599|Kruppel-like factor 3 (basic)	AK007959|Klf3|16599|Kruppel-like factor 3 (basic)	NM_008453|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr4_-_62815137_62815208	1.36278	HNF4A_NR2F1,2.p2	X68680|Ambp|11699|alpha 1 microglobulin/bikunin	AK004907|Ambp|11699|alpha 1 microglobulin/bikunin	D28812|Ambp|11699|alpha 1 microglobulin/bikunin	NM_007443|Ambp|11699|alpha 1 microglobulin/bikunin	BC021660|Ambp|11699|alpha 1 microglobulin/bikunin
mm9_v1_chr2_-_91771882_91771894	1.36175	HNF4A_NR2F1,2.p2	M34327|Mdk|17242|midkine	M35833|Mdk|17242|midkine
mm9_v1_chr3_+_121948541_121948621	1.34594	HNF4A_NR2F1,2.p2	BC132404|Gclm|14630|glutamate-cysteine ligase, modifier subunit	BC138783|Gclm|14630|glutamate-cysteine ligase, modifier subunit
mm9_v1_chr11_+_61298923_61298953	1.33692	HNF4A_NR2F1,2.p2	NM_029568|Mfap4|76293|microfibrillar-associated protein 4	AK003537|Mfap4|76293|microfibrillar-associated protein 4	BC022666|Mfap4|76293|microfibrillar-associated protein 4
mm9_v1_chr10_+_81022304_81022369	1.32684	HNF4A_NR2F1,2.p2	AK158714|Aes|14797|amino-terminal enhancer of split	NM_010347|Aes|14797|amino-terminal enhancer of split	L12140|Aes|14797|amino-terminal enhancer of split
mm9_v1_chr11_+_69446453_69446577	1.32374	HNF4A_NR2F1,2.p2	AK172042|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	BC062971|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	NM_011814|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	AK154243|Fxr2|23879|fragile X mental retardation, autosomal homolog 2	BC057007|Fxr2|23879|fragile X mental retardation, autosomal homolog 2
mm9_v1_chr4_+_97444312_97444317	1.32211	HNF4A_NR2F1,2.p2	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr12_+_25393083_25393272	1.30951	HNF4A_NR2F1,2.p2	BC085136|Rrm2|20135|ribonucleotide reductase M2	NM_009104|Rrm2|20135|ribonucleotide reductase M2	AK142027|Rrm2|20135|ribonucleotide reductase M2	AK161643|Rrm2|20135|ribonucleotide reductase M2	AK167204|Rrm2|20135|ribonucleotide reductase M2	AK168117|Rrm2|20135|ribonucleotide reductase M2	AK168994|Rrm2|20135|ribonucleotide reductase M2	AK168205|Rrm2|20135|ribonucleotide reductase M2	M14223|Rrm2|20135|ribonucleotide reductase M2	AK088907|Rrm2|20135|ribonucleotide reductase M2	AK167078|Rrm2|20135|ribonucleotide reductase M2	AK147111|Rrm2|20135|ribonucleotide reductase M2	AK188716|Rrm2|20135|ribonucleotide reductase M2	AK189805|Rrm2|20135|ribonucleotide reductase M2
mm9_v1_chrX_-_165015162_165015164	1.30615	HNF4A_NR2F1,2.p2	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr19_-_47389240_47389295	1.30198	HNF4A_NR2F1,2.p2	AK085227|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr4_-_123427465_123427587	1.29794	HNF4A_NR2F1,2.p2	AK006378|Akirin1|68050|akirin 1	AK078055|Akirin1|68050|akirin 1	AB041594|Akirin1|68050|akirin 1	AK160087|Akirin1|68050|akirin 1	AK168201|Akirin1|68050|akirin 1	AK168214|Akirin1|68050|akirin 1	AK146017|Akirin1|68050|akirin 1	AK168530|Akirin1|68050|akirin 1	AK159632|Akirin1|68050|akirin 1	NM_023423|Akirin1|68050|akirin 1	BC003291|Akirin1|68050|akirin 1
mm9_v1_chr7_-_73834359_73834410	1.29646	HNF4A_NR2F1,2.p2	AK051017|Asb7|117589|ankyrin repeat and SOCS box-containing 7
mm9_v1_chr6_+_48791481_48791563	1.2865	HNF4A_NR2F1,2.p2	NM_025326|Tmem176a|66058|transmembrane protein 176A	AK002546|Tmem176a|66058|transmembrane protein 176A	AK004315|Tmem176a|66058|transmembrane protein 176A	AK165660|Tmem176a|66058|transmembrane protein 176A	AK150576|Tmem176a|66058|transmembrane protein 176A	AK079378|Tmem176a|66058|transmembrane protein 176A	BC010831|Tmem176a|66058|transmembrane protein 176A	AK162991|Tmem176a|66058|transmembrane protein 176A
mm9_v1_chr6_+_83299439_83299497	1.28519	HNF4A_NR2F1,2.p2	BC116947|Bola3|78653|bolA-like 3 (E. coli)	BC116949|Bola3|78653|bolA-like 3 (E. coli)	AK131950|Bola3|78653|bolA-like 3 (E. coli)	AK160488|Bola3|78653|bolA-like 3 (E. coli)	AK028102|Bola3|78653|bolA-like 3 (E. coli)	NM_175277|Bola3|78653|bolA-like 3 (E. coli)
mm9_v1_chr2_+_174586283_174586336	1.28489	HNF4A_NR2F1,2.p2	BC137727|Edn3|13616|endothelin 3	BC137730|Edn3|13616|endothelin 3	AK048006|Edn3|13616|endothelin 3
mm9_v1_chr7_+_135047561_135047646	1.28427	HNF4A_NR2F1,2.p2	NM_009739|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK150607|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK150723|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK167519|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	AK145479|Bckdk|12041|branched chain ketoacid dehydrogenase kinase	BC046595|Bckdk|12041|branched chain ketoacid dehydrogenase kinase
mm9_v1_chr9_-_66891535_66891699	1.27647	HNF4A_NR2F1,2.p2	NM_001164252|Tpm1|22003|tropomyosin 1, alpha	NM_001164253|Tpm1|22003|tropomyosin 1, alpha	NM_001164254|Tpm1|22003|tropomyosin 1, alpha	NM_001164256|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr8_-_87369780_87369877	1.27288	HNF4A_NR2F1,2.p2	
mm9_v1_chr1_-_140743779_140743951	1.27059	HNF4A_NR2F1,2.p2	AB221560|Lhx9|16876|LIM homeobox protein 9	AK013209|Lhx9|16876|LIM homeobox protein 9
mm9_v1_chr9_-_71959599_71959699	1.26405	HNF4A_NR2F1,2.p2	M97635|Tcf12|21406|transcription factor 12	BC037097|Tcf12|21406|transcription factor 12	AK143246|Tcf12|21406|transcription factor 12	NM_011544|Tcf12|21406|transcription factor 12	AK169800|Tcf12|21406|transcription factor 12
mm9_v1_chr4_-_26273772_26273798	1.25091	HNF4A_NR2F1,2.p2	AK030141|Manea|242362|mannosidase, endo-alpha	BC067076|Manea|242362|mannosidase, endo-alpha	NM_172865|Manea|242362|mannosidase, endo-alpha
mm9_v1_chr10_-_80555271_80555374	1.25045	HNF4A_NR2F1,2.p2	AK050186|Creb3l3|208677|cAMP responsive element binding protein 3-like 3	AF392874|Creb3l3|208677|cAMP responsive element binding protein 3-like 3	BC028820|Creb3l3|208677|cAMP responsive element binding protein 3-like 3
mm9_v1_chr5_-_117838974_117839070	1.24716	HNF4A_NR2F1,2.p2	AK011931|Rfc5|72151|replication factor C (activator 1) 5	AK171372|Rfc5|72151|replication factor C (activator 1) 5	BC089001|Rfc5|72151|replication factor C (activator 1) 5	NM_028128|Rfc5|72151|replication factor C (activator 1) 5	AK011489|Rfc5|72151|replication factor C (activator 1) 5	AK150036|Rfc5|72151|replication factor C (activator 1) 5	AK170211|Rfc5|72151|replication factor C (activator 1) 5
mm9_v1_chr13_-_58228079_58228222	1.23844	HNF4A_NR2F1,2.p2	AK004260|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr6_+_47403899_47403903	1.23733	HNF4A_NR2F1,2.p2	AK164274|Cul1|26965|cullin 1
mm9_v1_chr11_-_120440311_120440499	1.23659	HNF4A_NR2F1,2.p2	AK188655|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha	AK187656|Arhgdia|192662|Rho GDP dissociation inhibitor (GDI) alpha
mm9_v1_chr3_-_107889507_107889627	1.23345	HNF4A_NR2F1,2.p2	BC049119|Ampd2|109674|adenosine monophosphate deaminase 2	NM_028779|Ampd2|109674|adenosine monophosphate deaminase 2	AK169980|Ampd2|109674|adenosine monophosphate deaminase 2	AK004759|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr2_-_73749080_73749118	1.23009	HNF4A_NR2F1,2.p2	BC116218|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
mm9_v1_chr17_-_35972184_35972488	1.2212	HNF4A_NR2F1,2.p2	M28732|Tubb5|22154|tubulin, beta 5	BC047993|Tubb5|22154|tubulin, beta 5
mm9_v1_chr7_+_27814096_27814122	1.21987	HNF4A_NR2F1,2.p2	BC018356|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	NM_133657|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	BC094017|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	L06463|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12
mm9_v1_chr5_+_135644245_135644412	1.21728	HNF4A_NR2F1,2.p2	AK160439|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK131643|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK155076|Bcl7b|12054|B-cell CLL/lymphoma 7B	AJ011145|Bcl7b|12054|B-cell CLL/lymphoma 7B	AK186334|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr12_+_9581302_9581328	1.21663	HNF4A_NR2F1,2.p2	BC023922|Osr1|23967|odd-skipped related 1 (Drosophila)
mm9_v1_chr5_+_135663096_135663289	1.21181	HNF4A_NR2F1,2.p2	AK017894|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	NM_011714|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	AF084480|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	BC141399|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B	BC171975|Baz1b|22385|bromodomain adjacent to zinc finger domain, 1B
mm9_v1_chr10_-_126725826_126725958	1.20422	HNF4A_NR2F1,2.p2	BC059015|Mbd6|110962|methyl-CpG binding domain protein 6	NM_033072|Mbd6|110962|methyl-CpG binding domain protein 6	AK158797|Mbd6|110962|methyl-CpG binding domain protein 6
mm9_v1_chr9_+_89804723_89804776	1.19785	HNF4A_NR2F1,2.p2	AK079638|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	BC042449|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK140227|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK140380|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK162908|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AK038936|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	AF169826|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	BC138682|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1	BC138683|Rasgrf1|19417|RAS protein-specific guanine nucleotide-releasing factor 1
mm9_v1_chr3_-_58329780_58329826	1.19659	HNF4A_NR2F1,2.p2	NM_030685|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr10_+_81022283_81022301	1.19563	HNF4A_NR2F1,2.p2	X73361|Aes|14797|amino-terminal enhancer of split	BC132217|Aes|14797|amino-terminal enhancer of split	BC132219|Aes|14797|amino-terminal enhancer of split	BC145299|Aes|14797|amino-terminal enhancer of split
mm9_v1_chr2_-_26788845_26789009	1.19493	HNF4A_NR2F1,2.p2	AK216354|Surf4|20932|surfeit gene 4	AK150568|Surf4|20932|surfeit gene 4	AK151319|Surf4|20932|surfeit gene 4	BC027352|Surf4|20932|surfeit gene 4	AK151161|Surf4|20932|surfeit gene 4	BC003280|Surf4|20932|surfeit gene 4	AK152692|Surf4|20932|surfeit gene 4	AK004691|Surf4|20932|surfeit gene 4	AK128902|Surf4|20932|surfeit gene 4	AK145670|Surf4|20932|surfeit gene 4
mm9_v1_chr15_+_6395311_6395349	1.18974	HNF4A_NR2F1,2.p2	BC011137|C9|12279|complement component 9	NM_013485|C9|12279|complement component 9
mm9_v1_chr10_-_128142007_128142106	1.1874	HNF4A_NR2F1,2.p2	AJ223732|Cdk2|12566|cyclin-dependent kinase 2	U63337|Cdk2|12566|cyclin-dependent kinase 2	AK148017|Cdk2|12566|cyclin-dependent kinase 2	AK042462|Cdk2|12566|cyclin-dependent kinase 2	AK151979|Cdk2|12566|cyclin-dependent kinase 2	AK153983|Cdk2|12566|cyclin-dependent kinase 2	AK154997|Cdk2|12566|cyclin-dependent kinase 2	AK036589|Cdk2|12566|cyclin-dependent kinase 2	AK152922|Cdk2|12566|cyclin-dependent kinase 2	BC005654|Cdk2|12566|cyclin-dependent kinase 2	BC026145|Cdk2|12566|cyclin-dependent kinase 2	AK146845|Cdk2|12566|cyclin-dependent kinase 2	NM_016756|Cdk2|12566|cyclin-dependent kinase 2	NM_183417|Cdk2|12566|cyclin-dependent kinase 2
mm9_v1_chr4_-_150418704_150418793	1.18142	HNF4A_NR2F1,2.p2	NM_011067|Per3|18628|period homolog 3 (Drosophila)	AK166514|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr1_-_74331210_74331311	1.17685	HNF4A_NR2F1,2.p2	AK151820|Aamp|227290|angio-associated migratory protein	AK167621|Aamp|227290|angio-associated migratory protein	AK162750|Aamp|227290|angio-associated migratory protein	AK146470|Aamp|227290|angio-associated migratory protein	NM_001190444|Aamp|227290|angio-associated migratory protein	NM_146110|Aamp|227290|angio-associated migratory protein
mm9_v1_chr2_-_91771919_91771949	1.1692	HNF4A_NR2F1,2.p2	AK032742|Mdk|17242|midkine	AK084457|Mdk|17242|midkine	NM_001012336|Mdk|17242|midkine
mm9_v1_chr17_-_47970167_47970209	1.16753	HNF4A_NR2F1,2.p2	U57822|Mdfi|17240|MyoD family inhibitor	BC006018|Mdfi|17240|MyoD family inhibitor	NM_010783|Mdfi|17240|MyoD family inhibitor	U57821|Mdfi|17240|MyoD family inhibitor
mm9_v1_chr9_+_43851477_43851547	1.16234	HNF4A_NR2F1,2.p2	M12380|Thy1|21838|thymus cell antigen 1, theta
mm9_v1_chr6_-_5206215_5206292	1.15782	HNF4A_NR2F1,2.p2	L76193|Pon3|269823|paraoxonase 3	AK076090|Pon3|269823|paraoxonase 3	AK088572|Pon3|269823|paraoxonase 3	NM_173006|Pon3|269823|paraoxonase 3	BC099416|Pon3|269823|paraoxonase 3
mm9_v1_chr7_+_28043740_28043802	1.15673	HNF4A_NR2F1,2.p2	NM_010950|Numbl|18223|numb-like
mm9_v1_chr4_+_97444326_97444386	1.15462	HNF4A_NR2F1,2.p2	BC075702|Nfia|18027|nuclear factor I/A	D90172|Nfia|18027|nuclear factor I/A
mm9_v1_chr17_+_35187185_35187282	1.15283	HNF4A_NR2F1,2.p2	AK167765|Clic1|114584|chloride intracellular channel 1	BC004658|Clic1|114584|chloride intracellular channel 1	NM_033444|Clic1|114584|chloride intracellular channel 1	AK150611|Clic1|114584|chloride intracellular channel 1
mm9_v1_chr1_+_193730645_193730708	1.13766	HNF4A_NR2F1,2.p2	AK145100|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	NM_009579|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1	BC052166|Slc30a1|22782|solute carrier family 30 (zinc transporter), member 1
mm9_v1_chr9_-_21602942_21603000	1.13677	HNF4A_NR2F1,2.p2	BC010245|Kank2|235041|KN motif and ankyrin repeat domains 2	AK045492|Kank2|235041|KN motif and ankyrin repeat domains 2	BC006647|Kank2|235041|KN motif and ankyrin repeat domains 2	AK031324|Kank2|235041|KN motif and ankyrin repeat domains 2	AK049288|Kank2|235041|KN motif and ankyrin repeat domains 2	NM_145611|Kank2|235041|KN motif and ankyrin repeat domains 2
mm9_v1_chrX_-_159267249_159267385	1.1339	HNF4A_NR2F1,2.p2	AK162263|Txlng|353170|taxilin gamma	BC080778|Txlng|353170|taxilin gamma	AK161561|Txlng|353170|taxilin gamma	AK031783|Txlng|353170|taxilin gamma	BC059099|Txlng|353170|taxilin gamma	BC117898|Txlng|353170|taxilin gamma	BC117899|Txlng|353170|taxilin gamma	AK030100|Txlng|353170|taxilin gamma	NM_178935|Txlng|353170|taxilin gamma	AK078477|Txlng|353170|taxilin gamma	AK044130|Txlng|353170|taxilin gamma	DQ316984|Txlng|353170|taxilin gamma	DQ320011|Txlng|353170|taxilin gamma
mm9_v1_chr2_-_25221101_25221190	1.13355	HNF4A_NR2F1,2.p2	BC043307|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077912|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK151942|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	NM_001033293|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK149178|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK168977|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK159787|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077550|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	BC130030|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
mm9_v1_chr3_-_51364525_51364799	1.12966	HNF4A_NR2F1,2.p2	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr1_-_136131399_136131572	1.12806	HNF4A_NR2F1,2.p2	AK134709|Adora1|11539|adenosine A1 receptor	AK134553|Adora1|11539|adenosine A1 receptor	AK045729|Adora1|11539|adenosine A1 receptor
mm9_v1_chr9_+_96096690_96096766	1.12401	HNF4A_NR2F1,2.p2	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr1_+_42753970_42753990	1.11966	HNF4A_NR2F1,2.p2	NM_008900|Pou3f3|18993|POU domain, class 3, transcription factor 3
mm9_v1_chr2_-_24331075_24331093	1.11852	HNF4A_NR2F1,2.p2	X57487|Pax8|18510|paired box gene 8	BC020526|Pax8|18510|paired box gene 8	NM_011040|Pax8|18510|paired box gene 8	AK032920|Pax8|18510|paired box gene 8	AK050717|Pax8|18510|paired box gene 8	AK052610|Pax8|18510|paired box gene 8
mm9_v1_chr1_+_55144949_55145013	1.11684	HNF4A_NR2F1,2.p2	NM_008303|Hspe1|15528|heat shock protein 1 (chaperonin 10)
mm9_v1_chr19_-_30623890_30624012	1.11648	HNF4A_NR2F1,2.p2	AF030433|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	BC050189|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	NM_010051|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK141693|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)	AK144119|Dkk1|13380|dickkopf homolog 1 (Xenopus laevis)
mm9_v1_chr6_+_107479719_107479841	1.11363	HNF4A_NR2F1,2.p2	AK139965|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK139355|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK164849|Lrrn1|16979|leucine rich repeat protein 1, neuronal	D45913|Lrrn1|16979|leucine rich repeat protein 1, neuronal	NM_008516|Lrrn1|16979|leucine rich repeat protein 1, neuronal	BC058701|Lrrn1|16979|leucine rich repeat protein 1, neuronal	AK160841|Lrrn1|16979|leucine rich repeat protein 1, neuronal
mm9_v1_chr12_+_21322219_21322285	1.11006	HNF4A_NR2F1,2.p2	BC060949|Iah1|67732|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	AK005287|Iah1|67732|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	NM_026347|Iah1|67732|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	AK011299|Iah1|67732|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	AK014743|Iah1|67732|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)	BC087901|Iah1|67732|isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae)
mm9_v1_chr2_+_118423946_118423997	1.10849	HNF4A_NR2F1,2.p2	NM_009773|Bub1b|12236|budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)	AF107296|Bub1b|12236|budding uninhibited by benzimidazoles 1 homolog, beta (S. cerevisiae)
mm9_v1_chr16_+_62854129_62854197	1.10409	HNF4A_NR2F1,2.p2	AK163032|Pros1|19128|protein S (alpha)	AK145501|Pros1|19128|protein S (alpha)	NM_011173|Pros1|19128|protein S (alpha)	Z25469|Pros1|19128|protein S (alpha)	BC128316|Pros1|19128|protein S (alpha)
mm9_v1_chr1_+_9788206_9788302	1.10307	HNF4A_NR2F1,2.p2	NM_133220|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_177547|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK143836|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031133|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151793|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171120|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171186|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151867|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171678|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK172323|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK028722|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039247|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK039427|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151181|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166414|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK151996|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AF312007|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr9_-_103132523_103132605	1.10119	HNF4A_NR2F1,2.p2	AF440692|Trf|22041|transferrin	BC092046|Trf|22041|transferrin	BC058216|Trf|22041|transferrin	BC020295|Trf|22041|transferrin	BC022986|Trf|22041|transferrin	BC058218|Trf|22041|transferrin	AK085754|Trf|22041|transferrin	AK142599|Trf|22041|transferrin	AK146549|Trf|22041|transferrin	AK149559|Trf|22041|transferrin	AK149595|Trf|22041|transferrin	AK168368|Trf|22041|transferrin	AK168405|Trf|22041|transferrin	AK168419|Trf|22041|transferrin	AK168938|Trf|22041|transferrin	AK169187|Trf|22041|transferrin
mm9_v1_chr5_-_4104331_4104507	1.08917	HNF4A_NR2F1,2.p2	AK028355|Cyp51|13121|cytochrome P450, family 51	BC031813|Cyp51|13121|cytochrome P450, family 51	AK031059|Cyp51|13121|cytochrome P450, family 51	AK075764|Cyp51|13121|cytochrome P450, family 51	AK076983|Cyp51|13121|cytochrome P450, family 51	AF166266|Cyp51|13121|cytochrome P450, family 51	AK028815|Cyp51|13121|cytochrome P450, family 51
mm9_v1_chr11_-_79317471_79317554	1.08828	HNF4A_NR2F1,2.p2	BC024757|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr4_+_57858096_57858154	1.08765	HNF4A_NR2F1,2.p2	NM_001035532|Akap2|11641|A kinase (PRKA) anchor protein 2	NM_009649|Akap2|11641|A kinase (PRKA) anchor protein 2	AK041873|Akap2|11641|A kinase (PRKA) anchor protein 2	AK147420|Akap2|11641|A kinase (PRKA) anchor protein 2	BC003735|Akap2|11641|A kinase (PRKA) anchor protein 2
mm9_v1_chr4_-_43044241_43044275	1.08712	HNF4A_NR2F1,2.p2	AK002793|Stoml2|66592|stomatin (Epb7.2)-like 2	BC069941|Stoml2|66592|stomatin (Epb7.2)-like 2	BC003425|Stoml2|66592|stomatin (Epb7.2)-like 2	NM_023231|Stoml2|66592|stomatin (Epb7.2)-like 2	AF323178|Stoml2|66592|stomatin (Epb7.2)-like 2
mm9_v1_chr16_+_44173356_44173509	1.0828	HNF4A_NR2F1,2.p2	NM_001029889|Gm608|207806|predicted gene 608
mm9_v1_chr17_-_56429892_56429938	1.07675	HNF4A_NR2F1,2.p2	DQ257436|Plin3|66905|perilipin 3	BC011116|Plin3|66905|perilipin 3	AK050140|Plin3|66905|perilipin 3	AK167214|Plin3|66905|perilipin 3	AK004970|Plin3|66905|perilipin 3	AK012517|Plin3|66905|perilipin 3	AK049537|Plin3|66905|perilipin 3	AK132313|Plin3|66905|perilipin 3	NM_025836|Plin3|66905|perilipin 3
mm9_v1_chr3_+_118265066_118265156	1.06925	HNF4A_NR2F1,2.p2	AK149426|Dpyd|99586|dihydropyrimidine dehydrogenase	NM_170778|Dpyd|99586|dihydropyrimidine dehydrogenase	BC039699|Dpyd|99586|dihydropyrimidine dehydrogenase
mm9_v1_chr3_+_87885892_87885972	1.0691	HNF4A_NR2F1,2.p2	BC151102|Iqgap3|404710|IQ motif containing GTPase activating protein 3	AK050913|Iqgap3|404710|IQ motif containing GTPase activating protein 3	AK162700|Iqgap3|404710|IQ motif containing GTPase activating protein 3	BC068159|Iqgap3|404710|IQ motif containing GTPase activating protein 3	NM_001033484|Iqgap3|404710|IQ motif containing GTPase activating protein 3
mm9_v1_chr2_+_173935819_173935978	1.06808	HNF4A_NR2F1,2.p2	AK150313|Npepl1|228961|aminopeptidase-like 1	AK170509|Npepl1|228961|aminopeptidase-like 1	NM_213733|Npepl1|228961|aminopeptidase-like 1	AK156136|Npepl1|228961|aminopeptidase-like 1	BC069933|Npepl1|228961|aminopeptidase-like 1	AK144651|Npepl1|228961|aminopeptidase-like 1	BC080707|Npepl1|228961|aminopeptidase-like 1
mm9_v1_chr7_+_19669194_19669289	1.0646	HNF4A_NR2F1,2.p2	NM_001190490|Dmpk|13400|dystrophia myotonica-protein kinase	NM_001190491|Dmpk|13400|dystrophia myotonica-protein kinase	NM_032418|Dmpk|13400|dystrophia myotonica-protein kinase	BC056615|Dmpk|13400|dystrophia myotonica-protein kinase	BC024150|Dmpk|13400|dystrophia myotonica-protein kinase	BC075715|Dmpk|13400|dystrophia myotonica-protein kinase
mm9_v1_chr5_+_135644171_135644241	1.06399	HNF4A_NR2F1,2.p2	NM_009745|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr2_-_25316553_25316613	1.06352	HNF4A_NR2F1,2.p2	BC029214|BC029214|227622|cDNA sequence BC029214	NM_153557|BC029214|227622|cDNA sequence BC029214
mm9_v1_chr14_-_31736727_31736772	1.05939	HNF4A_NR2F1,2.p2	X70393|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	BC015276|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	AK146700|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3	NM_008407|Itih3|16426|inter-alpha trypsin inhibitor, heavy chain 3
mm9_v1_chr1_+_72353980_72354076	1.05867	HNF4A_NR2F1,2.p2	AK081633|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	NM_009533|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK089944|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK165470|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	AK084263|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5	BC051660|Xrcc5|22596|X-ray repair complementing defective repair in Chinese hamster cells 5
mm9_v1_chr15_+_99803210_99803320	1.05682	HNF4A_NR2F1,2.p2	NM_001024526|Larp4|207214|La ribonucleoprotein domain family, member 4	AK165392|Larp4|207214|La ribonucleoprotein domain family, member 4	AK172198|Larp4|207214|La ribonucleoprotein domain family, member 4	AK049756|Larp4|207214|La ribonucleoprotein domain family, member 4	BC075726|Larp4|207214|La ribonucleoprotein domain family, member 4
mm9_v1_chr11_+_100437204_100437208	1.05337	HNF4A_NR2F1,2.p2	AK041969|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK140280|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	NM_001146318|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr3_+_121670737_121670783	1.0528	HNF4A_NR2F1,2.p2	AK044979|Arhgap29|214137|Rho GTPase activating protein 29	AK043637|Arhgap29|214137|Rho GTPase activating protein 29	BC052858|Arhgap29|214137|Rho GTPase activating protein 29
mm9_v1_chr17_-_84246073_84246129	1.04966	HNF4A_NR2F1,2.p2	AK002608|Haao|107766|3-hydroxyanthranilate 3,4-dioxygenase	BC012872|Haao|107766|3-hydroxyanthranilate 3,4-dioxygenase	BC094021|Haao|107766|3-hydroxyanthranilate 3,4-dioxygenase	NM_025325|Haao|107766|3-hydroxyanthranilate 3,4-dioxygenase
mm9_v1_chr2_-_164705231_164705295	1.04858	HNF4A_NR2F1,2.p2	BC037706|4930445K14Rik|74886|RIKEN cDNA 4930445K14 gene	AK142117|4930445K14Rik|74886|RIKEN cDNA 4930445K14 gene	AK015392|4930445K14Rik|74886|RIKEN cDNA 4930445K14 gene
mm9_v1_chr5_+_145875080_145875194	1.04785	HNF4A_NR2F1,2.p2	AK002274|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK005378|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK151911|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK153510|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	NM_023142|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK159371|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK159477|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK168774|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK148145|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK157098|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK170759|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK172124|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK147731|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK171364|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	BC092051|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK180107|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK197333|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	BC003441|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	AK167978|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B	BC010275|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B
mm9_v1_chr16_-_18248701_18248813	1.04764	HNF4A_NR2F1,2.p2	AK008276|Ranbp1|19385|RAN binding protein 1	AK002989|Ranbp1|19385|RAN binding protein 1	AK151167|Ranbp1|19385|RAN binding protein 1	AK153074|Ranbp1|19385|RAN binding protein 1	AK167053|Ranbp1|19385|RAN binding protein 1	AK088781|Ranbp1|19385|RAN binding protein 1	AK166642|Ranbp1|19385|RAN binding protein 1	NM_011239|Ranbp1|19385|RAN binding protein 1	X56045|Ranbp1|19385|RAN binding protein 1	X56046|Ranbp1|19385|RAN binding protein 1	BC061140|Ranbp1|19385|RAN binding protein 1
mm9_v1_chr9_+_59526881_59526990	1.04561	HNF4A_NR2F1,2.p2	AK187622|Pkm2|18746|pyruvate kinase, muscle	AK189986|Pkm2|18746|pyruvate kinase, muscle	AK191750|Pkm2|18746|pyruvate kinase, muscle	AK193178|Pkm2|18746|pyruvate kinase, muscle	AK194857|Pkm2|18746|pyruvate kinase, muscle	AK195839|Pkm2|18746|pyruvate kinase, muscle	AK196046|Pkm2|18746|pyruvate kinase, muscle	AK196682|Pkm2|18746|pyruvate kinase, muscle	AK198278|Pkm2|18746|pyruvate kinase, muscle	AK198346|Pkm2|18746|pyruvate kinase, muscle	AK198579|Pkm2|18746|pyruvate kinase, muscle	AK199500|Pkm2|18746|pyruvate kinase, muscle	AK200354|Pkm2|18746|pyruvate kinase, muscle	AK201799|Pkm2|18746|pyruvate kinase, muscle	AK204154|Pkm2|18746|pyruvate kinase, muscle	AK219384|Pkm2|18746|pyruvate kinase, muscle	AK197608|Pkm2|18746|pyruvate kinase, muscle
mm9_v1_chr7_+_16701811_16702117	1.04527	HNF4A_NR2F1,2.p2	AK078019|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK215640|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK198211|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK199113|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr8_+_108424267_108424373	1.04463	HNF4A_NR2F1,2.p2	AK153861|Pskh1|244631|protein serine kinase H1	AK053397|Pskh1|244631|protein serine kinase H1	AK154570|Pskh1|244631|protein serine kinase H1	AK166338|Pskh1|244631|protein serine kinase H1	BC050128|Pskh1|244631|protein serine kinase H1	NM_173432|Pskh1|244631|protein serine kinase H1
mm9_v1_chr10_-_6373388_6373465	1.04184	HNF4A_NR2F1,2.p2	AK075931|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK160025|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK036284|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK028211|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	AK038579|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170785|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_001170786|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	NM_172308|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr11_+_101229029_101229043	1.03714	HNF4A_NR2F1,2.p2	AK050279|G6pc|14377|glucose-6-phosphatase, catalytic	AK052656|G6pc|14377|glucose-6-phosphatase, catalytic	U00445|G6pc|14377|glucose-6-phosphatase, catalytic	BC013448|G6pc|14377|glucose-6-phosphatase, catalytic	NM_008061|G6pc|14377|glucose-6-phosphatase, catalytic
mm9_v1_chr19_+_9016466_9016538	1.03319	HNF4A_NR2F1,2.p2	AK088158|Mta2|23942|metastasis-associated gene family, member 2	AK157717|Mta2|23942|metastasis-associated gene family, member 2	AF159259|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr16_+_18877336_18877523	1.03306	HNF4A_NR2F1,2.p2	X92590|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X75295|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X99712|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr11_+_87391881_87392001	1.03173	HNF4A_NR2F1,2.p2	AK133933|Sept4|18952|septin 4	AK137299|Sept4|18952|septin 4	AK039859|Sept4|18952|septin 4
mm9_v1_chr7_-_134160552_134160577	1.02502	HNF4A_NR2F1,2.p2	AK082775|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chr16_+_20717874_20717914	1.02383	HNF4A_NR2F1,2.p2	AK146429|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	AK161617|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	BC002306|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	NM_145632|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	BC125612|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H	BC125638|Polr2h|245841|polymerase (RNA) II (DNA directed) polypeptide H
mm9_v1_chr19_+_38470458_38470592	1.01563	HNF4A_NR2F1,2.p2	BC137663|Tmem20|240660|transmembrane protein 20	BC137664|Tmem20|240660|transmembrane protein 20	AK041618|Tmem20|240660|transmembrane protein 20	NM_175507|Tmem20|240660|transmembrane protein 20	AK030517|Tmem20|240660|transmembrane protein 20	AK171987|Tmem20|240660|transmembrane protein 20	AK052365|Tmem20|240660|transmembrane protein 20
mm9_v1_chr10_+_127759640_127759648	1.00985	HNF4A_NR2F1,2.p2	AK013014|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK019927|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr11_+_102622745_102622752	1.00656	HNF4A_NR2F1,2.p2	AK157926|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_001110778|Adam11|11488|a disintegrin and metallopeptidase domain 11	NM_009613|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr6_+_124613114_124613226	1.00207	HNF4A_NR2F1,2.p2	NM_145130|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3	AK154062|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3	AK165319|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3	AK169452|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3	AY028317|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3	AK098090|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3	BC006753|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3	AB294194|Lpcat3|14792|lysophosphatidylcholine acyltransferase 3
mm9_v1_chr2_+_154482753_154482916	1.00161	HNF4A_NR2F1,2.p2	NM_029362|Chmp4b|75608|chromatin modifying protein 4B	BC011429|Chmp4b|75608|chromatin modifying protein 4B	AK008205|Chmp4b|75608|chromatin modifying protein 4B	AK156473|Chmp4b|75608|chromatin modifying protein 4B	AK159193|Chmp4b|75608|chromatin modifying protein 4B	BC059279|Chmp4b|75608|chromatin modifying protein 4B
mm9_v1_chr3_-_142544883_142544984	1.00097	HNF4A_NR2F1,2.p2	AK046248|Pkn2|109333|protein kinase N2	AK171092|Pkn2|109333|protein kinase N2	BC052073|Pkn2|109333|protein kinase N2	AK077910|Pkn2|109333|protein kinase N2	AK028469|Pkn2|109333|protein kinase N2	AK049713|Pkn2|109333|protein kinase N2	AK133298|Pkn2|109333|protein kinase N2	NM_178654|Pkn2|109333|protein kinase N2
mm9_v1_chr11_-_69137260_69137374	1.00092	HNF4A_NR2F1,2.p2	AK147774|Cntrob|216846|centrobin, centrosomal BRCA2 interacting protein	AK036710|Cntrob|216846|centrobin, centrosomal BRCA2 interacting protein	NM_172560|Cntrob|216846|centrobin, centrosomal BRCA2 interacting protein
mm9_v1_chr4_-_133443662_133443718	0.998919	HNF4A_NR2F1,2.p2	BC049076|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	BC094470|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	M28489|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	AK148208|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1	NM_009097|Rps6ka1|20111|ribosomal protein S6 kinase polypeptide 1
mm9_v1_chr3_-_87804277_87804315	0.998776	HNF4A_NR2F1,2.p2	NM_001109758|Bcan|12032|brevican	NM_007529|Bcan|12032|brevican
mm9_v1_chr17_-_27076365_27076517	0.998425	HNF4A_NR2F1,2.p2	AK007580|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK007912|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK145185|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC024422|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	BC028531|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026307|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003381|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	NM_026948|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK003647|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK004197|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK159336|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK002828|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)	AK012608|Cuta|67675|cutA divalent cation tolerance homolog (E. coli)
mm9_v1_chr9_+_50560862_50561082	0.997748	HNF4A_NR2F1,2.p2	NM_009964|Cryab|12955|crystallin, alpha B
mm9_v1_chr3_-_103541882_103541927	0.997441	HNF4A_NR2F1,2.p2	AK002518|Olfml3|99543|olfactomedin-like 3	AK131879|Olfml3|99543|olfactomedin-like 3	AK076084|Olfml3|99543|olfactomedin-like 3	AK143728|Olfml3|99543|olfactomedin-like 3	NM_133859|Olfml3|99543|olfactomedin-like 3
mm9_v1_chr2_+_156601175_156601221	0.996945	HNF4A_NR2F1,2.p2	AK007972|Myl9|98932|myosin, light polypeptide 9, regulatory	AK020258|Myl9|98932|myosin, light polypeptide 9, regulatory	NM_172118|Myl9|98932|myosin, light polypeptide 9, regulatory
mm9_v1_chr3_+_108926062_108926088	0.992297	HNF4A_NR2F1,2.p2	AK032806|Slc25a24|229731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	NM_172685|Slc25a24|229731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	AK146034|Slc25a24|229731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	AK170598|Slc25a24|229731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	AK167778|Slc25a24|229731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	AK168090|Slc25a24|229731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	BC055369|Slc25a24|229731|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24
mm9_v1_chr10_+_128184908_128185017	0.991033	HNF4A_NR2F1,2.p2	NM_030100|Wibg|78428|within bgcn homolog (Drosophila)	AK020702|Wibg|78428|within bgcn homolog (Drosophila)	AJ459407|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr17_-_35973192_35973216	0.98981	HNF4A_NR2F1,2.p2	AK013283|Tubb5|22154|tubulin, beta 5	AK012365|Tubb5|22154|tubulin, beta 5
mm9_v1_chr2_-_26092876_26092939	0.986792	HNF4A_NR2F1,2.p2	AK157992|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK140324|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK165642|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	BC030934|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	NM_153559|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2
mm9_v1_chr16_-_18248659_18248687	0.979772	HNF4A_NR2F1,2.p2	L25255|Ranbp1|19385|RAN binding protein 1
mm9_v1_chr8_-_112261607_112261664	0.977479	HNF4A_NR2F1,2.p2	AK089170|Atxn1l|52335|ataxin 1-like	NM_001080930|Atxn1l|52335|ataxin 1-like	AK172521|Atxn1l|52335|ataxin 1-like
mm9_v1_chr16_+_72663393_72663448	0.976902	HNF4A_NR2F1,2.p2	AK138485|Robo1|19876|roundabout homolog 1 (Drosophila)	AK143001|Robo1|19876|roundabout homolog 1 (Drosophila)	NM_019413|Robo1|19876|roundabout homolog 1 (Drosophila)	AK032752|Robo1|19876|roundabout homolog 1 (Drosophila)	AK142047|Robo1|19876|roundabout homolog 1 (Drosophila)
mm9_v1_chr11_-_75252976_75253008	0.976274	HNF4A_NR2F1,2.p2	BC026756|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2	Z36774|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2	NM_008878|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2	AK077563|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2
mm9_v1_chr10_-_127325725_127325818	0.973563	HNF4A_NR2F1,2.p2	BC024603|Rdh7|54150|retinol dehydrogenase 7	AF056194|Rdh7|54150|retinol dehydrogenase 7	NM_017473|Rdh7|54150|retinol dehydrogenase 7	NM_001150749|Rdh7|54150|retinol dehydrogenase 7
mm9_v1_chr7_-_20282950_20283001	0.97239	HNF4A_NR2F1,2.p2	M73490|Apoe|11816|apolipoprotein E
mm9_v1_chr13_+_69948718_69948911	0.964716	HNF4A_NR2F1,2.p2	AK156498|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	AK013992|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	NM_138596|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	AK003862|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	BC048638|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	BC089312|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	BC056438|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	BC059231|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)	AK215905|Med10|28077|mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)
mm9_v1_chr2_+_75670296_75670394	0.963117	HNF4A_NR2F1,2.p2	AK031154|Agps|228061|alkylglycerone phosphate synthase	AK042745|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr7_+_25266986_25267120	0.962331	HNF4A_NR2F1,2.p2	AK143204|Cadm4|260299|cell adhesion molecule 4	NM_153112|Cadm4|260299|cell adhesion molecule 4	AY059394|Cadm4|260299|cell adhesion molecule 4
mm9_v1_chr7_-_31827099_31827340	0.961341	HNF4A_NR2F1,2.p2	BC031112|Fxyd5|18301|FXYD domain-containing ion transport regulator 5	BC013340|Fxyd5|18301|FXYD domain-containing ion transport regulator 5	AK169966|Fxyd5|18301|FXYD domain-containing ion transport regulator 5	AK003068|Fxyd5|18301|FXYD domain-containing ion transport regulator 5	AK170810|Fxyd5|18301|FXYD domain-containing ion transport regulator 5	U72680|Fxyd5|18301|FXYD domain-containing ion transport regulator 5	NM_008761|Fxyd5|18301|FXYD domain-containing ion transport regulator 5
mm9_v1_chr5_+_135625533_135625593	0.96022	HNF4A_NR2F1,2.p2	AK088198|Tbl2|27368|transducin (beta)-like 2	AK132366|Tbl2|27368|transducin (beta)-like 2	BC039273|Tbl2|27368|transducin (beta)-like 2	AK010899|Tbl2|27368|transducin (beta)-like 2	AK165686|Tbl2|27368|transducin (beta)-like 2	BC048185|Tbl2|27368|transducin (beta)-like 2	NM_013763|Tbl2|27368|transducin (beta)-like 2	AF097523|Tbl2|27368|transducin (beta)-like 2
mm9_v1_chr12_+_78339071_78339134	0.959653	HNF4A_NR2F1,2.p2	BC010666|Fut8|53618|fucosyltransferase 8	AK051811|Fut8|53618|fucosyltransferase 8
mm9_v1_chr10_+_126727846_126727865	0.958818	HNF4A_NR2F1,2.p2	NM_007837|Ddit3|13198|DNA-damage inducible transcript 3	AK028120|Ddit3|13198|DNA-damage inducible transcript 3	AK040004|Ddit3|13198|DNA-damage inducible transcript 3	BC013718|Ddit3|13198|DNA-damage inducible transcript 3
mm9_v1_chr2_+_157854192_157854307	0.958663	HNF4A_NR2F1,2.p2	AK011979|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	DQ372939|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK035806|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK147718|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK147930|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr9_-_106558412_106558439	0.954029	HNF4A_NR2F1,2.p2	BC115866|Grm2|108068|glutamate receptor, metabotropic 2	NM_001160353|Grm2|108068|glutamate receptor, metabotropic 2
mm9_v1_chr15_-_97661807_97661936	0.95176	HNF4A_NR2F1,2.p2	AF207749|Hdac7|56233|histone deacetylase 7	AK040406|Hdac7|56233|histone deacetylase 7	AK150041|Hdac7|56233|histone deacetylase 7	AK036586|Hdac7|56233|histone deacetylase 7	AK044287|Hdac7|56233|histone deacetylase 7
mm9_v1_chr11_-_89864036_89864209	0.946413	HNF4A_NR2F1,2.p2	Z50024|Pctp|18559|phosphatidylcholine transfer protein	BC053478|Pctp|18559|phosphatidylcholine transfer protein	BC071234|Pctp|18559|phosphatidylcholine transfer protein	AF151639|Pctp|18559|phosphatidylcholine transfer protein	NM_008796|Pctp|18559|phosphatidylcholine transfer protein
mm9_v1_chr13_+_23627286_23627290	0.944089	HNF4A_NR2F1,2.p2	NM_145073|Hist1h3g|97908|histone cluster 1, H3g	BC125355|Hist1h3g|97908|histone cluster 1, H3g	BC125357|Hist1h3g|97908|histone cluster 1, H3g
mm9_v1_chr19_-_4305954_4306041	0.937361	HNF4A_NR2F1,2.p2	BC053922|Adrbk1|110355|adrenergic receptor kinase, beta 1	NM_130863|Adrbk1|110355|adrenergic receptor kinase, beta 1	BC003196|Adrbk1|110355|adrenergic receptor kinase, beta 1	AF333028|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr6_-_122552269_122552466	0.929146	HNF4A_NR2F1,2.p2	AK146427|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK151799|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK166412|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	AK165209|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	BC003792|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	NM_001134391|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	NM_031159|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	U22262|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	U22263|Apobec1|11810|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
mm9_v1_chr14_-_80061976_80061977	0.926963	HNF4A_NR2F1,2.p2	NM_010701|Lect1|16840|leukocyte cell derived chemotaxin 1	U43509|Lect1|16840|leukocyte cell derived chemotaxin 1
mm9_v1_chr4_+_21806813_21806887	0.925479	HNF4A_NR2F1,2.p2	BC060960|Coq3|230027|coenzyme Q3 homolog, methyltransferase (yeast)	AK028680|Coq3|230027|coenzyme Q3 homolog, methyltransferase (yeast)	NM_172687|Coq3|230027|coenzyme Q3 homolog, methyltransferase (yeast)	AK035318|Coq3|230027|coenzyme Q3 homolog, methyltransferase (yeast)	AK170488|Coq3|230027|coenzyme Q3 homolog, methyltransferase (yeast)	AK166475|Coq3|230027|coenzyme Q3 homolog, methyltransferase (yeast)	AK142287|Coq3|230027|coenzyme Q3 homolog, methyltransferase (yeast)
mm9_v1_chr8_-_73905790_73905902	0.924857	HNF4A_NR2F1,2.p2	AK131941|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6	NM_010150|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6
mm9_v1_chr2_+_158620555_158620616	0.924626	HNF4A_NR2F1,2.p2	BC029709|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	NM_145742|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK156955|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK155482|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK170952|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35	AK004665|Dhx35|71715|DEAH (Asp-Glu-Ala-His) box polypeptide 35
mm9_v1_chr7_-_20300724_20300809	0.921827	HNF4A_NR2F1,2.p2	AK170991|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK163759|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK164570|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	BC100452|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK165173|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK150019|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AK164222|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	NM_001109748|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	NM_016871|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)
mm9_v1_chr10_-_6979627_6979716	0.921767	HNF4A_NR2F1,2.p2	AK082372|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr1_+_21230683_21230717	0.920466	HNF4A_NR2F1,2.p2	AK014076|Gsta3|14859|glutathione S-transferase, alpha 3	AK149543|Gsta3|14859|glutathione S-transferase, alpha 3
mm9_v1_chr16_-_30587549_30587690	0.919924	HNF4A_NR2F1,2.p2	AK146895|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK030940|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK145186|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK135345|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK078501|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	BC043724|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	NM_178069|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)	AK132527|Lsg1|224092|large subunit GTPase 1 homolog (S. cerevisiae)
mm9_v1_chr7_+_31017305_31017379	0.916893	HNF4A_NR2F1,2.p2	AK012635|Polr2i|69920|polymerase (RNA) II (DNA directed) polypeptide I	AB221537|Polr2i|69920|polymerase (RNA) II (DNA directed) polypeptide I
mm9_v1_chr1_+_57463594_57463619	0.916118	HNF4A_NR2F1,2.p2	AK165130|9430016H08Rik|68115|RIKEN cDNA 9430016H08 gene	AK007831|9430016H08Rik|68115|RIKEN cDNA 9430016H08 gene	BC071241|9430016H08Rik|68115|RIKEN cDNA 9430016H08 gene
mm9_v1_chr12_+_103707474_103707512	0.914299	HNF4A_NR2F1,2.p2	AK152533|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	AK153010|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	AK007592|Golga5|27277|golgi autoantigen, golgin subfamily a, 5	AK168765|Golga5|27277|golgi autoantigen, golgin subfamily a, 5
mm9_v1_chr14_-_14117143_14117151	0.910329	HNF4A_NR2F1,2.p2	AK081144|Gm5087|328354|predicted gene 5087	AK083193|Gm5087|328354|predicted gene 5087	NM_177813|Gm5087|328354|predicted gene 5087
mm9_v1_chr3_-_58329639_58329732	0.906756	HNF4A_NR2F1,2.p2	AK167482|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK050508|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150809|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK151323|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK153056|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK153118|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK153286|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK166052|Serp1|28146|stress-associated endoplasmic reticulum protein 1	BC002114|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK151384|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK166004|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150659|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK152373|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK152882|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK153138|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK075776|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK144732|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK151669|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK152583|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK153415|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK169049|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK167952|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150005|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150025|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150368|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150770|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK151853|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK152383|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK168569|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK168734|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK168754|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK168947|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AB041655|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK032680|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK148485|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150428|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK150714|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK151456|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK152636|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK152806|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK152996|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK159271|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK161595|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK168046|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK169175|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK170734|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK002653|Serp1|28146|stress-associated endoplasmic reticulum protein 1	AK149786|Serp1|28146|stress-associated endoplasmic reticulum protein 1
mm9_v1_chr17_-_34164996_34165023	0.906321	HNF4A_NR2F1,2.p2	BC086927|H2-Ke6|14979|H2-K region expressed gene 6	NM_013543|H2-Ke6|14979|H2-K region expressed gene 6
mm9_v1_chr3_+_37538897_37539001	0.902752	HNF4A_NR2F1,2.p2	AF176903|Spry1|24063|sprouty homolog 1 (Drosophila)	BC051977|Spry1|24063|sprouty homolog 1 (Drosophila)
mm9_v1_chr10_-_93052348_93052428	0.901828	HNF4A_NR2F1,2.p2	BC066015|Snrpf|69878|small nuclear ribonucleoprotein polypeptide F	AK135835|Snrpf|69878|small nuclear ribonucleoprotein polypeptide F	AK008240|Snrpf|69878|small nuclear ribonucleoprotein polypeptide F	NM_027246|Snrpf|69878|small nuclear ribonucleoprotein polypeptide F	BC100499|Snrpf|69878|small nuclear ribonucleoprotein polypeptide F
mm9_v1_chr16_+_56477956_56478012	0.899202	HNF4A_NR2F1,2.p2	AK086582|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014399|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014422|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014423|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_001014424|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	NM_178790|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK041192|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK043879|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AK051214|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC145388|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	BC150763|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190339|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190340|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190341|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190342|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein	AB190343|Abi3bp|320712|ABI gene family, member 3 (NESH) binding protein
mm9_v1_chr11_+_78312784_78312851	0.89851	HNF4A_NR2F1,2.p2	X63003|Vtn|22370|vitronectin	BC012690|Vtn|22370|vitronectin	AF440693|Vtn|22370|vitronectin	M77123|Vtn|22370|vitronectin
mm9_v1_chr19_+_46471385_46471515	0.898304	HNF4A_NR2F1,2.p2	AJ131692|Sufu|24069|suppressor of fused homolog (Drosophila)	AK016976|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_001025391|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_015752|Sufu|24069|suppressor of fused homolog (Drosophila)	BC048168|Sufu|24069|suppressor of fused homolog (Drosophila)	BC056997|Sufu|24069|suppressor of fused homolog (Drosophila)	AK156410|Sufu|24069|suppressor of fused homolog (Drosophila)	AF134893|Sufu|24069|suppressor of fused homolog (Drosophila)	AJ308626|Sufu|24069|suppressor of fused homolog (Drosophila)	AK015885|Sufu|24069|suppressor of fused homolog (Drosophila)	AK047603|Sufu|24069|suppressor of fused homolog (Drosophila)
mm9_v1_chr18_-_77870871_77870990	0.89809	HNF4A_NR2F1,2.p2	AK009215|2310007O11Rik|74177|RIKEN cDNA 2310007O11 gene
mm9_v1_chr3_+_128313904_128314051	0.894211	HNF4A_NR2F1,2.p2	
mm9_v1_chr13_+_23787679_23787706	0.88629	HNF4A_NR2F1,2.p2	NM_010377|Hist1h1t|107970|histone cluster 1, H1t	BC119305|Hist1h1t|107970|histone cluster 1, H1t	BC119307|Hist1h1t|107970|histone cluster 1, H1t
mm9_v1_chr14_+_55059217_55059253	0.881109	HNF4A_NR2F1,2.p2	AY622974|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr11_+_61298978_61299017	0.880213	HNF4A_NR2F1,2.p2	AK075659|Mfap4|76293|microfibrillar-associated protein 4
mm9_v1_chr1_+_140860285_140860402	0.878875	HNF4A_NR2F1,2.p2	NM_001166501|Dennd1b|329260|DENN/MADD domain containing 1B	BC042698|Dennd1b|329260|DENN/MADD domain containing 1B
mm9_v1_chr9_-_96378951_96379045	0.877291	HNF4A_NR2F1,2.p2	AK007588|Rnf7|19823|ring finger protein 7	BC011127|Rnf7|19823|ring finger protein 7	AK002628|Rnf7|19823|ring finger protein 7	AK003248|Rnf7|19823|ring finger protein 7	AK003963|Rnf7|19823|ring finger protein 7	AK011328|Rnf7|19823|ring finger protein 7	AK146030|Rnf7|19823|ring finger protein 7	NM_011279|Rnf7|19823|ring finger protein 7	AF092877|Rnf7|19823|ring finger protein 7
mm9_v1_chr5_-_8422533_8422723	0.876715	HNF4A_NR2F1,2.p2	BC138709|Dbf4|27214|DBF4 homolog (S. cerevisiae)	BC138710|Dbf4|27214|DBF4 homolog (S. cerevisiae)	BC145392|Dbf4|27214|DBF4 homolog (S. cerevisiae)	AJ003132|Dbf4|27214|DBF4 homolog (S. cerevisiae)	BC069983|Dbf4|27214|DBF4 homolog (S. cerevisiae)	AK132403|Dbf4|27214|DBF4 homolog (S. cerevisiae)	AK014480|Dbf4|27214|DBF4 homolog (S. cerevisiae)	BC050827|Dbf4|27214|DBF4 homolog (S. cerevisiae)	NM_001190717|Dbf4|27214|DBF4 homolog (S. cerevisiae)	NM_013726|Dbf4|27214|DBF4 homolog (S. cerevisiae)
mm9_v1_chr2_-_103637714_103637791	0.872839	HNF4A_NR2F1,2.p2	AK133891|Caprin1|53872|cell cycle associated protein 1	AK170830|Caprin1|53872|cell cycle associated protein 1	AK147514|Caprin1|53872|cell cycle associated protein 1	BC052427|Caprin1|53872|cell cycle associated protein 1	AK157707|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr19_+_5689759_5689887	0.87214	HNF4A_NR2F1,2.p2	BC047152|Map3k11|26403|mitogen-activated protein kinase kinase kinase 11
mm9_v1_chr1_+_63223728_63223739	0.868801	HNF4A_NR2F1,2.p2	AF029844|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2
mm9_v1_chr5_-_108304062_108304125	0.866482	HNF4A_NR2F1,2.p2	AK165332|Evi5|14020|ecotropic viral integration site 5	BC030056|Evi5|14020|ecotropic viral integration site 5	NM_007964|Evi5|14020|ecotropic viral integration site 5	U53586|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr8_+_123012667_123012765	0.865249	HNF4A_NR2F1,2.p2	BC043094|Gse1|382034|genetic suppressor element 1	NM_198671|Gse1|382034|genetic suppressor element 1
mm9_v1_chr5_-_104406395_104406398	0.865102	HNF4A_NR2F1,2.p2	
mm9_v1_chr15_-_82996562_82996627	0.863437	HNF4A_NR2F1,2.p2	AK202011|Cyb5r3|109754|cytochrome b5 reductase 3	AK208840|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr9_-_103382586_103382657	0.860095	HNF4A_NR2F1,2.p2	AK134810|Bfsp2|107993|beaded filament structural protein 2, phakinin	BC068172|Bfsp2|107993|beaded filament structural protein 2, phakinin	NM_001002896|Bfsp2|107993|beaded filament structural protein 2, phakinin
mm9_v1_chr19_+_4962305_4962355	0.859381	HNF4A_NR2F1,2.p2	NM_025553|Mrpl11|66419|mitochondrial ribosomal protein L11	AK010329|Mrpl11|66419|mitochondrial ribosomal protein L11	AB049639|Mrpl11|66419|mitochondrial ribosomal protein L11	AK167247|Mrpl11|66419|mitochondrial ribosomal protein L11	AK002797|Mrpl11|66419|mitochondrial ribosomal protein L11	BC046750|Mrpl11|66419|mitochondrial ribosomal protein L11
mm9_v1_chr5_-_121038602_121038704	0.858702	HNF4A_NR2F1,2.p2	AK037856|Tpcn1|252972|two pore channel 1	AK077411|Tpcn1|252972|two pore channel 1	BC058951|Tpcn1|252972|two pore channel 1	NM_145853|Tpcn1|252972|two pore channel 1	AF217002|Tpcn1|252972|two pore channel 1	AK148129|Tpcn1|252972|two pore channel 1
mm9_v1_chr6_-_52590285_52590317	0.8583	HNF4A_NR2F1,2.p2	BC003914|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase	NM_145567|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase
mm9_v1_chr4_+_84851440_84851480	0.858258	HNF4A_NR2F1,2.p2	AF326561|Sh3gl2|20404|SH3-domain GRB2-like 2	AF326562|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr9_-_107996781_107996821	0.857916	HNF4A_NR2F1,2.p2	BC025494|Apeh|235606|acylpeptide hydrolase	BC005716|Apeh|235606|acylpeptide hydrolase	AK041271|Apeh|235606|acylpeptide hydrolase	AK149671|Apeh|235606|acylpeptide hydrolase	AK149713|Apeh|235606|acylpeptide hydrolase	NM_146226|Apeh|235606|acylpeptide hydrolase
mm9_v1_chr5_+_23870625_23870649	0.857709	HNF4A_NR2F1,2.p2	AK158106|Nos3|18127|nitric oxide synthase 3, endothelial cell	AK077896|Nos3|18127|nitric oxide synthase 3, endothelial cell	NM_008713|Nos3|18127|nitric oxide synthase 3, endothelial cell	U53142|Nos3|18127|nitric oxide synthase 3, endothelial cell	BC052636|Nos3|18127|nitric oxide synthase 3, endothelial cell
mm9_v1_chr6_-_40386107_40386145	0.8551	HNF4A_NR2F1,2.p2	AK145280|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK147402|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK054277|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	NM_175528|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene
mm9_v1_chr5_+_32794685_32794762	0.854018	HNF4A_NR2F1,2.p2	AK017392|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr4_+_97444563_97444661	0.853967	HNF4A_NR2F1,2.p2	D90176|Nfia|18027|nuclear factor I/A	Y07690|Nfia|18027|nuclear factor I/A	Y07691|Nfia|18027|nuclear factor I/A	BC122878|Nfia|18027|nuclear factor I/A	BC122880|Nfia|18027|nuclear factor I/A	AF326553|Nfia|18027|nuclear factor I/A	AF326554|Nfia|18027|nuclear factor I/A	U57633|Nfia|18027|nuclear factor I/A
mm9_v1_chr12_-_112909656_112909823	0.852313	HNF4A_NR2F1,2.p2	AK216419|Ckb|12709|creatine kinase, brain
mm9_v1_chr7_-_133819870_133819892	0.85031	HNF4A_NR2F1,2.p2	BC005413|Sult1a1|20887|sulfotransferase family 1A, phenol-preferring, member 1	NM_133670|Sult1a1|20887|sulfotransferase family 1A, phenol-preferring, member 1	L02331|Sult1a1|20887|sulfotransferase family 1A, phenol-preferring, member 1	AK002700|Sult1a1|20887|sulfotransferase family 1A, phenol-preferring, member 1
mm9_v1_chr11_+_70376359_70376411	0.85031	HNF4A_NR2F1,2.p2	NM_001045959|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_001045964|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_016713|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_176893|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB035697|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB041925|Mink1|50932|misshapen-like kinase 1 (zebrafish)
mm9_v1_chr5_-_137592066_137592132	0.848803	HNF4A_NR2F1,2.p2	BC045615|Trim56|384309|tripartite motif-containing 56	AK037350|Trim56|384309|tripartite motif-containing 56	NM_201373|Trim56|384309|tripartite motif-containing 56
mm9_v1_chr19_+_7049639_7049662	0.848282	HNF4A_NR2F1,2.p2	BC125654|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B	BC125650|Ppp1r14b|18938|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm9_v1_chr7_-_52308243_52308250	0.847114	HNF4A_NR2F1,2.p2	BC075628|Prr12|233210|proline rich 12	NM_175022|Prr12|233210|proline rich 12
mm9_v1_chr9_-_37240759_37240759	0.84682	HNF4A_NR2F1,2.p2	NM_001164767|Robo3|19649|roundabout homolog 3 (Drosophila)
mm9_v1_chr11_-_83406475_83406588	0.845744	HNF4A_NR2F1,2.p2	BC002073|Ccl6|20305|chemokine (C-C motif) ligand 6	AF128188|Ccl6|20305|chemokine (C-C motif) ligand 6	AF128189|Ccl6|20305|chemokine (C-C motif) ligand 6	AF128190|Ccl6|20305|chemokine (C-C motif) ligand 6	AF128191|Ccl6|20305|chemokine (C-C motif) ligand 6	AF128192|Ccl6|20305|chemokine (C-C motif) ligand 6	AK002697|Ccl6|20305|chemokine (C-C motif) ligand 6	AK008547|Ccl6|20305|chemokine (C-C motif) ligand 6	AK150336|Ccl6|20305|chemokine (C-C motif) ligand 6	M58004|Ccl6|20305|chemokine (C-C motif) ligand 6	AK154553|Ccl6|20305|chemokine (C-C motif) ligand 6	NM_009139|Ccl6|20305|chemokine (C-C motif) ligand 6
mm9_v1_chr6_+_58590475_58590601	0.845471	HNF4A_NR2F1,2.p2	AK142528|Abcg2|26357|ATP-binding cassette, sub-family G (WHITE), member 2
mm9_v1_chr8_-_108231924_108232089	0.845193	HNF4A_NR2F1,2.p2	AK087475|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC026993|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC018168|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC052498|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	NM_198299|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene	BC023921|E130303B06Rik|102124|RIKEN cDNA E130303B06 gene
mm9_v1_chr17_-_46841851_46841924	0.840731	HNF4A_NR2F1,2.p2	BC010716|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AY338234|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AK160587|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform	AB053464|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr7_-_13583494_13583549	0.838629	HNF4A_NR2F1,2.p2	BC013272|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC013335|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	AJ223959|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	AK144301|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	NM_009512|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5
mm9_v1_chr10_+_80640462_80640539	0.837726	HNF4A_NR2F1,2.p2	AK182470|Eef2|13629|eukaryotic translation elongation factor 2	AK183389|Eef2|13629|eukaryotic translation elongation factor 2	AK187829|Eef2|13629|eukaryotic translation elongation factor 2	AK193057|Eef2|13629|eukaryotic translation elongation factor 2	AK197271|Eef2|13629|eukaryotic translation elongation factor 2	AK211738|Eef2|13629|eukaryotic translation elongation factor 2	AK212666|Eef2|13629|eukaryotic translation elongation factor 2	AK215787|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr8_+_107450138_107450197	0.836767	HNF4A_NR2F1,2.p2	NM_001163756|Ces2e|234673|carboxylesterase 2E	NM_172759|Ces2e|234673|carboxylesterase 2E	AK077248|Ces2e|234673|carboxylesterase 2E	BC055062|Ces2e|234673|carboxylesterase 2E	AK033563|Ces2e|234673|carboxylesterase 2E
mm9_v1_chr11_+_69137459_69137503	0.832971	HNF4A_NR2F1,2.p2	NM_001024206|Trappc1|245828|trafficking protein particle complex 1
mm9_v1_chr7_+_107520844_107520880	0.830633	HNF4A_NR2F1,2.p2	AK148365|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr4_+_59594569_59594621	0.830443	HNF4A_NR2F1,2.p2	AK145230|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	AY725196|Hsdl2|72479|hydroxysteroid dehydrogenase like 2
mm9_v1_chr1_-_20810238_20810392	0.830213	HNF4A_NR2F1,2.p2	X62154|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	BC031700|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	NM_008563|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK146497|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK147065|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	BC020400|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK148006|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK088142|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK133850|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)	AK145563|Mcm3|17215|minichromosome maintenance deficient 3 (S. cerevisiae)
mm9_v1_chr5_+_32000312_32000424	0.827892	HNF4A_NR2F1,2.p2	AK156929|Bre|107976|brain and reproductive organ-expressed protein	AK020047|Bre|107976|brain and reproductive organ-expressed protein	BC061000|Bre|107976|brain and reproductive organ-expressed protein	AK050695|Bre|107976|brain and reproductive organ-expressed protein	AK080991|Bre|107976|brain and reproductive organ-expressed protein	AK166884|Bre|107976|brain and reproductive organ-expressed protein	AF440752|Bre|107976|brain and reproductive organ-expressed protein	AF527952|Bre|107976|brain and reproductive organ-expressed protein	AF527953|Bre|107976|brain and reproductive organ-expressed protein	AF527954|Bre|107976|brain and reproductive organ-expressed protein	AF527955|Bre|107976|brain and reproductive organ-expressed protein	AF538925|Bre|107976|brain and reproductive organ-expressed protein	NM_144541|Bre|107976|brain and reproductive organ-expressed protein	NM_181279|Bre|107976|brain and reproductive organ-expressed protein	NM_181280|Bre|107976|brain and reproductive organ-expressed protein	NM_181281|Bre|107976|brain and reproductive organ-expressed protein	NM_181282|Bre|107976|brain and reproductive organ-expressed protein
mm9_v1_chr7_+_134628622_134628734	0.825326	HNF4A_NR2F1,2.p2	NM_010183|Fbrs|14123|fibrosin
mm9_v1_chr2_+_163484132_163484240	0.824195	HNF4A_NR2F1,2.p2	AK164716|Pkig|18769|protein kinase inhibitor, gamma	AK168614|Pkig|18769|protein kinase inhibitor, gamma	NM_001164053|Pkig|18769|protein kinase inhibitor, gamma	AK184424|Pkig|18769|protein kinase inhibitor, gamma	AK186035|Pkig|18769|protein kinase inhibitor, gamma	AK186927|Pkig|18769|protein kinase inhibitor, gamma
mm9_v1_chr11_-_3831963_3832085	0.820867	HNF4A_NR2F1,2.p2	AK143761|Tcn2|21452|transcobalamin 2	NM_001130459|Tcn2|21452|transcobalamin 2	AK161618|Tcn2|21452|transcobalamin 2	AK147176|Tcn2|21452|transcobalamin 2	AK133707|Tcn2|21452|transcobalamin 2	NM_015749|Tcn2|21452|transcobalamin 2	AK170401|Tcn2|21452|transcobalamin 2	NM_001130458|Tcn2|21452|transcobalamin 2
mm9_v1_chr17_-_35971913_35971974	0.817734	HNF4A_NR2F1,2.p2	AK188748|Tubb5|22154|tubulin, beta 5	AK196888|Tubb5|22154|tubulin, beta 5
mm9_v1_chr14_+_122277941_122277979	0.811085	HNF4A_NR2F1,2.p2	
mm9_v1_chr8_-_87604530_87604644	0.803704	HNF4A_NR2F1,2.p2	BC034842|Wdr83|67836|WD repeat domain containing 83	BC019369|Wdr83|67836|WD repeat domain containing 83	BC094624|Wdr83|67836|WD repeat domain containing 83	AK005790|Wdr83|67836|WD repeat domain containing 83	BC005587|Wdr83|67836|WD repeat domain containing 83	AK020654|Wdr83|67836|WD repeat domain containing 83	AY365434|Wdr83|67836|WD repeat domain containing 83	NM_026399|Wdr83|67836|WD repeat domain containing 83
mm9_v1_chr1_-_141755209_141755302	0.802334	HNF4A_NR2F1,2.p2	AJ565908|BC026782|545366|cDNA sequence BC026782	M29007|BC026782|545366|cDNA sequence BC026782	AK149511|BC026782|545366|cDNA sequence BC026782	NM_001025575|BC026782|545366|cDNA sequence BC026782
mm9_v1_chr7_+_109044853_109044944	0.802122	HNF4A_NR2F1,2.p2	AK139635|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	NM_027532|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK135201|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	AK014309|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene	BC080730|3200002M19Rik|75430|RIKEN cDNA 3200002M19 gene
mm9_v1_chr7_-_107806887_107806989	0.800161	HNF4A_NR2F1,2.p2	AK005102|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	AK164683|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	AK158172|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_001163183|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_001163184|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_001163185|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1
mm9_v1_chr11_-_3831515_3831585	0.7973	HNF4A_NR2F1,2.p2	AK197212|Tcn2|21452|transcobalamin 2	AF090686|Tcn2|21452|transcobalamin 2
mm9_v1_chr10_-_75236102_75236123	0.794597	HNF4A_NR2F1,2.p2	BC010753|Ddt|13202|D-dopachrome tautomerase	NM_010027|Ddt|13202|D-dopachrome tautomerase
mm9_v1_chr14_+_99445595_99445694	0.78867	HNF4A_NR2F1,2.p2	AK034930|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	NM_175265|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	AK141389|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	AK167430|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene	BC052183|6720463M24Rik|77744|RIKEN cDNA 6720463M24 gene
mm9_v1_chr14_+_32031041_32031060	0.788655	HNF4A_NR2F1,2.p2	AK129018|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AK137463|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	AB127607|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	NM_001025379|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	BC115440|Sema3g|218877|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G
mm9_v1_chr7_+_35971403_35971489	0.784115	HNF4A_NR2F1,2.p2	BC027516|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	NM_017394|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AK031867|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	BC054765|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AB026688|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm9_v1_chr19_-_21547072_21547150	0.783122	HNF4A_NR2F1,2.p2	AF174583|Gda|14544|guanine deaminase	AK044078|Gda|14544|guanine deaminase	AK173138|Gda|14544|guanine deaminase	AK041056|Gda|14544|guanine deaminase	AK079459|Gda|14544|guanine deaminase	AK157014|Gda|14544|guanine deaminase	NM_010266|Gda|14544|guanine deaminase
mm9_v1_chrX_+_71002395_71002441	0.777558	HNF4A_NR2F1,2.p2	AK138168|Plxnb3|140571|plexin B3	AK138631|Plxnb3|140571|plexin B3	AK140240|Plxnb3|140571|plexin B3	NM_019587|Plxnb3|140571|plexin B3
mm9_v1_chr11_+_117670970_117671053	0.775955	HNF4A_NR2F1,2.p2	NM_009304|Syngr2|20973|synaptogyrin 2	AK150234|Syngr2|20973|synaptogyrin 2	AK170681|Syngr2|20973|synaptogyrin 2	AF151985|Syngr2|20973|synaptogyrin 2	BC004829|Syngr2|20973|synaptogyrin 2	AF364049|Syngr2|20973|synaptogyrin 2	AK157343|Syngr2|20973|synaptogyrin 2	AJ002307|Syngr2|20973|synaptogyrin 2
mm9_v1_chr5_+_135408221_135408290	0.774462	HNF4A_NR2F1,2.p2	AY138964|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354925|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354926|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AY354927|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	NM_024479|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK042578|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK132481|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	AK081683|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)	BC002286|Wbscr27|79565|Williams Beuren syndrome chromosome region 27 (human)
mm9_v1_chr7_+_28043818_28043826	0.774281	HNF4A_NR2F1,2.p2	AK147523|Numbl|18223|numb-like
mm9_v1_chr10_+_79792864_79792975	0.774237	HNF4A_NR2F1,2.p2	AK002562|Reep6|70335|receptor accessory protein 6	BC029741|Reep6|70335|receptor accessory protein 6	AB039933|Reep6|70335|receptor accessory protein 6	NM_139292|Reep6|70335|receptor accessory protein 6	AY562234|Reep6|70335|receptor accessory protein 6
mm9_v1_chr3_-_130433225_130433274	0.77206	HNF4A_NR2F1,2.p2	BC058118|Rpl34|68436|ribosomal protein L34	NM_026724|Rpl34|68436|ribosomal protein L34	BC100360|Rpl34-ps1|619547|ribosomal protein L34, pseudogene 1	AK003177|Rpl34|68436|ribosomal protein L34	AK146252|Rpl34|68436|ribosomal protein L34	BC086936|Rpl34|68436|ribosomal protein L34
mm9_v1_chr15_+_80064503_80064578	0.771301	HNF4A_NR2F1,2.p2	AK163389|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	NM_178719|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK041184|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK038466|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK044773|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK050546|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	AK080375|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)	BC094597|Smcr7l|239555|Smith-Magenis syndrome chromosome region, candidate 7-like (human)
mm9_v1_chr15_-_82075137_82075176	0.76701	HNF4A_NR2F1,2.p2	AY243536|Cenpm|66570|centromere protein M	AY243537|Cenpm|66570|centromere protein M	AK011191|Cenpm|66570|centromere protein M	BC009160|Cenpm|66570|centromere protein M	AK168203|Cenpm|66570|centromere protein M	AK011227|Cenpm|66570|centromere protein M	AK011793|Cenpm|66570|centromere protein M	AK011755|Cenpm|66570|centromere protein M	AK010885|Cenpm|66570|centromere protein M	AK017679|Cenpm|66570|centromere protein M	AK011464|Cenpm|66570|centromere protein M	NM_025639|Cenpm|66570|centromere protein M	NM_178269|Cenpm|66570|centromere protein M
mm9_v1_chr7_-_125272997_125273040	0.765748	HNF4A_NR2F1,2.p2	AK217186|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK176958|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	EF437380|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr11_+_75492764_75492890	0.760672	HNF4A_NR2F1,2.p2	AK154987|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028179|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK163291|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK152549|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK088519|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK052795|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK139089|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK036905|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK028488|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	NM_133656|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161356|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AK161761|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC012216|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	BC031149|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	S72408|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)	AF239673|Crk|12928|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm9_v1_chr6_+_124959207_124959358	0.758191	HNF4A_NR2F1,2.p2	AK156026|Zfp384|269800|zinc finger protein 384	AK172476|Zfp384|269800|zinc finger protein 384
mm9_v1_chr7_+_87169699_87169719	0.757546	HNF4A_NR2F1,2.p2	AK154953|Zfp710|209225|zinc finger protein 710	NM_001145999|Zfp710|209225|zinc finger protein 710	NM_001146000|Zfp710|209225|zinc finger protein 710	AK154871|Zfp710|209225|zinc finger protein 710
mm9_v1_chr5_-_124637176_124637203	0.757147	HNF4A_NR2F1,2.p2	AK129364|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	BC070452|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr4_+_134420419_134420535	0.756939	HNF4A_NR2F1,2.p2	BC145805|Rhd|19746|Rh blood group, D antigen	NM_011270|Rhd|19746|Rh blood group, D antigen	AF057524|Rhd|19746|Rh blood group, D antigen	AK089642|Rhd|19746|Rh blood group, D antigen	AF069311|Rhd|19746|Rh blood group, D antigen	AK079335|Rhd|19746|Rh blood group, D antigen	AK171641|Rhd|19746|Rh blood group, D antigen	AB015189|Rhd|19746|Rh blood group, D antigen	AB015190|Rhd|19746|Rh blood group, D antigen	AF047827|Rhd|19746|Rh blood group, D antigen	AK157850|Rhd|19746|Rh blood group, D antigen	AF012430|Rhd|19746|Rh blood group, D antigen
mm9_v1_chr9_+_122832164_122832215	0.75627	HNF4A_NR2F1,2.p2	AK147198|Zfp105|22646|zinc finger protein 105	BC052165|Zfp105|22646|zinc finger protein 105	NM_009544|Zfp105|22646|zinc finger protein 105	AF045565|Zfp105|22646|zinc finger protein 105
mm9_v1_chr2_+_103406466_103406480	0.756094	HNF4A_NR2F1,2.p2	BC054399|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	NM_178890|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK041486|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK170569|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK172468|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK042322|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK151620|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK152163|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2	AK172414|Abtb2|99382|ankyrin repeat and BTB (POZ) domain containing 2
mm9_v1_chr5_+_145928011_145928163	0.755387	HNF4A_NR2F1,2.p2	AK046064|Cpsf4|54188|cleavage and polyadenylation specific factor 4	NM_178576|Cpsf4|54188|cleavage and polyadenylation specific factor 4
mm9_v1_chr15_+_84753817_84753857	0.749799	HNF4A_NR2F1,2.p2	AK141750|Nup50|18141|nucleoporin 50	AK165581|Nup50|18141|nucleoporin 50	AK133562|Nup50|18141|nucleoporin 50	BC060234|Nup50|18141|nucleoporin 50	AK161713|Nup50|18141|nucleoporin 50	BC065102|Nup50|18141|nucleoporin 50	AK087706|Nup50|18141|nucleoporin 50	AK168888|Nup50|18141|nucleoporin 50	AK151947|Nup50|18141|nucleoporin 50	AK152309|Nup50|18141|nucleoporin 50	BC059239|Nup50|18141|nucleoporin 50	NM_016714|Nup50|18141|nucleoporin 50
mm9_v1_chr2_-_174120889_174120936	0.747884	HNF4A_NR2F1,2.p2	AF319945|Nespas|56802|neuroendocrine secretory protein antisense	AK153813|Nespas|56802|neuroendocrine secretory protein antisense
mm9_v1_chr8_-_88079169_88079179	0.744576	HNF4A_NR2F1,2.p2	NM_019794|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr17_-_57387033_57387124	0.740989	HNF4A_NR2F1,2.p2	AK047364|Gpr108|78308|G protein-coupled receptor 108	AF376726|Gpr108|78308|G protein-coupled receptor 108	AX775897|Gpr108|78308|G protein-coupled receptor 108	AK082797|Gpr108|78308|G protein-coupled receptor 108	BC016104|Gpr108|78308|G protein-coupled receptor 108	NM_030084|Gpr108|78308|G protein-coupled receptor 108	AK159313|Gpr108|78308|G protein-coupled receptor 108	AK170948|Gpr108|78308|G protein-coupled receptor 108	AK171030|Gpr108|78308|G protein-coupled receptor 108	AX775895|Gpr108|78308|G protein-coupled receptor 108
mm9_v1_chr8_-_87542451_87542752	0.739703	HNF4A_NR2F1,2.p2	AK212827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK183718|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK193379|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK180403|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK205686|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK216431|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chrX_+_98572571_98572682	0.738212	HNF4A_NR2F1,2.p2	BC026833|Gjb1|14618|gap junction protein, beta 1	NM_008124|Gjb1|14618|gap junction protein, beta 1
mm9_v1_chr4_+_128404814_128404885	0.737973	HNF4A_NR2F1,2.p2	NM_001195083|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC051657|Phc2|54383|polyhomeotic-like 2 (Drosophila)	AB062362|Phc2|54383|polyhomeotic-like 2 (Drosophila)	BC071246|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr8_+_72806863_72806966	0.73404	HNF4A_NR2F1,2.p2	NM_001146153|Homer3|26558|homer homolog 3 (Drosophila)	NM_011984|Homer3|26558|homer homolog 3 (Drosophila)	AK155463|Homer3|26558|homer homolog 3 (Drosophila)	BC095961|Homer3|26558|homer homolog 3 (Drosophila)	BC005773|Homer3|26558|homer homolog 3 (Drosophila)
mm9_v1_chr6_-_134516930_134517009	0.731291	HNF4A_NR2F1,2.p2	BC060704|Lrp6|16974|low density lipoprotein receptor-related protein 6	NM_008514|Lrp6|16974|low density lipoprotein receptor-related protein 6
mm9_v1_chr5_+_65194784_65194811	0.730314	HNF4A_NR2F1,2.p2	BC116938|Klf3|16599|Kruppel-like factor 3 (basic)	BC119214|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr11_-_102226475_102226594	0.726503	HNF4A_NR2F1,2.p2	AK172456|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK171662|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK137542|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK171845|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK172395|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158184|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK157181|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	AK158143|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1	NM_011403|Slc4a1|20533|solute carrier family 4 (anion exchanger), member 1
mm9_v1_chr16_-_13668230_13668281	0.725038	HNF4A_NR2F1,2.p2	AK041044|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK160611|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	BC021899|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK049829|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK045181|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	AK004572|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)	NM_028761|Parn|74108|poly(A)-specific ribonuclease (deadenylation nuclease)
mm9_v1_chr10_-_6373309_6373324	0.724912	HNF4A_NR2F1,2.p2	BC058265|Mthfd1l|270685|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
mm9_v1_chr18_-_70632130_70632138	0.723579	HNF4A_NR2F1,2.p2	AK037066|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene	NM_172967|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene
mm9_v1_chr8_+_97530174_97530212	0.721987	HNF4A_NR2F1,2.p2	AK182857|Gpr56|14766|G protein-coupled receptor 56
mm9_v1_chr18_+_70728508_70728589	0.721749	HNF4A_NR2F1,2.p2	AK082825|Mbd2|17191|methyl-CpG binding domain protein 2
mm9_v1_chr16_+_37580303_37580398	0.715561	HNF4A_NR2F1,2.p2	BC024369|Hgd|15233|homogentisate 1, 2-dioxygenase	BC037628|Hgd|15233|homogentisate 1, 2-dioxygenase	AK050193|Hgd|15233|homogentisate 1, 2-dioxygenase	BC044758|Hgd|15233|homogentisate 1, 2-dioxygenase	AK002584|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr16_-_18089085_18089282	0.71461	HNF4A_NR2F1,2.p2	BC125327|Prodh|19125|proline dehydrogenase	BC008548|Prodh|19125|proline dehydrogenase	U80020|Prodh|19125|proline dehydrogenase	AF120279|Prodh|19125|proline dehydrogenase	AK144068|Prodh|19125|proline dehydrogenase	AK085938|Prodh|19125|proline dehydrogenase	NM_011172|Prodh|19125|proline dehydrogenase
mm9_v1_chr7_+_3303657_3303670	0.713492	HNF4A_NR2F1,2.p2	AK144419|Prkcc|18752|protein kinase C, gamma	NM_011102|Prkcc|18752|protein kinase C, gamma
mm9_v1_chr4_-_116793851_116793888	0.71115	HNF4A_NR2F1,2.p2	AK020599|Btbd19|78611|BTB (POZ) domain containing 19
mm9_v1_chr5_-_45841382_45841479	0.710905	HNF4A_NR2F1,2.p2	AK011351|Qdpr|110391|quinoid dihydropteridine reductase	BC002107|Qdpr|110391|quinoid dihydropteridine reductase	AK159107|Qdpr|110391|quinoid dihydropteridine reductase	AK078123|Qdpr|110391|quinoid dihydropteridine reductase	AK166694|Qdpr|110391|quinoid dihydropteridine reductase	NM_024236|Qdpr|110391|quinoid dihydropteridine reductase
mm9_v1_chr12_-_105195097_105195135	0.710797	HNF4A_NR2F1,2.p2	M75717|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	BC061176|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	NM_009247|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	AK004999|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E	AK135650|Serpina1e|20704|serine (or cysteine) peptidase inhibitor, clade A, member 1E
mm9_v1_chr10_+_53316720_53316974	0.708417	HNF4A_NR2F1,2.p2	AK010210|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	NM_025541|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK012376|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK031513|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK088618|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	AK007804|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)	BC027628|Asf1a|66403|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm9_v1_chr5_-_134713923_134714158	0.707358	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_20441139_20441459	0.705519	HNF4A_NR2F1,2.p2	NM_001177630|Etl4|208618|enhancer trap locus 4	NM_001177631|Etl4|208618|enhancer trap locus 4	AK147510|Etl4|208618|enhancer trap locus 4	AB093289|Etl4|208618|enhancer trap locus 4	BC158051|Etl4|208618|enhancer trap locus 4	BC172143|Etl4|208618|enhancer trap locus 4	BC050016|Etl4|208618|enhancer trap locus 4	AK052733|Etl4|208618|enhancer trap locus 4
mm9_v1_chr15_+_3224767_3224812	0.700419	HNF4A_NR2F1,2.p2	AK190911|Sepp1|20363|selenoprotein P, plasma, 1	AK192055|Sepp1|20363|selenoprotein P, plasma, 1	AK192611|Sepp1|20363|selenoprotein P, plasma, 1	AK193239|Sepp1|20363|selenoprotein P, plasma, 1	AK193304|Sepp1|20363|selenoprotein P, plasma, 1	AK193589|Sepp1|20363|selenoprotein P, plasma, 1	AK196001|Sepp1|20363|selenoprotein P, plasma, 1	AK199796|Sepp1|20363|selenoprotein P, plasma, 1	AK200678|Sepp1|20363|selenoprotein P, plasma, 1	AK201439|Sepp1|20363|selenoprotein P, plasma, 1	AK201752|Sepp1|20363|selenoprotein P, plasma, 1	AK202422|Sepp1|20363|selenoprotein P, plasma, 1	AK203751|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr17_-_35018943_35019021	0.698333	HNF4A_NR2F1,2.p2	M57891|C2|12263|complement component 2 (within H-2S)	BC011086|C2|12263|complement component 2 (within H-2S)
mm9_v1_chr17_-_24832880_24833058	0.694273	HNF4A_NR2F1,2.p2	AF148688|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	AB041561|Gfer|11692|growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)
mm9_v1_chr8_-_87366624_87366670	0.692929	HNF4A_NR2F1,2.p2	X56603|Calr|12317|calreticulin
mm9_v1_chr2_-_73367455_73367546	0.691292	HNF4A_NR2F1,2.p2	BC049788|Wipf1|215280|WAS/WASL interacting protein family, member 1	NM_153138|Wipf1|215280|WAS/WASL interacting protein family, member 1
mm9_v1_chr17_+_17967938_17968143	0.689396	HNF4A_NR2F1,2.p2	NM_001162909|Ncrna00085|75202|non-protein coding RNA 85	AK016052|Ncrna00085|75202|non-protein coding RNA 85	AK020993|Ncrna00085|75202|non-protein coding RNA 85	BC171977|Ncrna00085|75202|non-protein coding RNA 85	BC171982|Ncrna00085|75202|non-protein coding RNA 85	BC171984|Ncrna00085|75202|non-protein coding RNA 85
mm9_v1_chr11_-_58745825_58746102	0.689081	HNF4A_NR2F1,2.p2	AK219828|Rnf187|108660|ring finger protein 187
mm9_v1_chr7_-_112748585_112748623	0.687329	HNF4A_NR2F1,2.p2	U89889|Hpx|15458|hemopexin	BC011246|Hpx|15458|hemopexin	BC019901|Hpx|15458|hemopexin
mm9_v1_chr11_-_102709293_102709399	0.679552	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_+_119311561_119311618	0.678295	HNF4A_NR2F1,2.p2	BC106189|Acvr2b|11481|activin receptor IIB	M84120|Acvr2b|11481|activin receptor IIB	NM_007397|Acvr2b|11481|activin receptor IIB
mm9_v1_chr19_-_6015125_6015246	0.676524	HNF4A_NR2F1,2.p2	AF021847|Capn1|12333|calpain 1	BC026138|Capn1|12333|calpain 1	BC050276|Capn1|12333|calpain 1	AK088547|Capn1|12333|calpain 1	AK149706|Capn1|12333|calpain 1	AK150084|Capn1|12333|calpain 1	AK168063|Capn1|12333|calpain 1	AK160940|Capn1|12333|calpain 1	AK165258|Capn1|12333|calpain 1	NM_007600|Capn1|12333|calpain 1
mm9_v1_chr1_+_153418580_153418669	0.670792	HNF4A_NR2F1,2.p2	AK170193|Fam129a|63913|family with sequence similarity 129, member A	AK136597|Fam129a|63913|family with sequence similarity 129, member A	BC099690|Fam129a|63913|family with sequence similarity 129, member A	BC021332|Fam129a|63913|family with sequence similarity 129, member A	BC069904|Fam129a|63913|family with sequence similarity 129, member A	AB049355|Fam129a|63913|family with sequence similarity 129, member A	BC038006|Fam129a|63913|family with sequence similarity 129, member A
mm9_v1_chr4_+_102791890_102792040	0.66733	HNF4A_NR2F1,2.p2	AK143201|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK138876|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	NM_001039081|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AK168693|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	BC108273|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis	AY769437|Mier1|71148|mesoderm induction early response 1 homolog (Xenopus laevis
mm9_v1_chrX_+_33868347_33868594	0.666317	HNF4A_NR2F1,2.p2	AK167341|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK016522|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK147751|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	NM_028894|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120688|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	BC120690|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3	AK030866|Lonrf3|74365|LON peptidase N-terminal domain and ring finger 3
mm9_v1_chr19_-_31839462_31839522	0.665436	HNF4A_NR2F1,2.p2	AK051624|Prkg1|19091|protein kinase, cGMP-dependent, type I	AK083991|Prkg1|19091|protein kinase, cGMP-dependent, type I	NM_001013833|Prkg1|19091|protein kinase, cGMP-dependent, type I
mm9_v1_chr2_+_174586119_174586276	0.663974	HNF4A_NR2F1,2.p2	U32330|Edn3|13616|endothelin 3	AK079150|Edn3|13616|endothelin 3	AK049775|Edn3|13616|endothelin 3	NM_007903|Edn3|13616|endothelin 3
mm9_v1_chr2_-_27102239_27102352	0.663954	HNF4A_NR2F1,2.p2	BC003456|Sardh|192166|sarcosine dehydrogenase	NM_138665|Sardh|192166|sarcosine dehydrogenase	AK163515|Sardh|192166|sarcosine dehydrogenase
mm9_v1_chr1_+_74552600_74552699	0.662068	HNF4A_NR2F1,2.p2	AK005025|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)	NM_021383|Rqcd1|58184|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm9_v1_chr4_-_128925666_128925738	0.660785	HNF4A_NR2F1,2.p2	AK154932|C77080|97130|expressed sequence C77080	NM_001033189|C77080|97130|expressed sequence C77080
mm9_v1_chr18_+_75527015_75527182	0.660193	HNF4A_NR2F1,2.p2	NM_001042660|Smad7|17131|MAD homolog 7 (Drosophila)	AK013237|Smad7|17131|MAD homolog 7 (Drosophila)	AJ000550|Smad7|17131|MAD homolog 7 (Drosophila)
mm9_v1_chr1_-_141456740_141456821	0.659832	HNF4A_NR2F1,2.p2	BC111870|Cfhr1|50702|complement factor H-related 1	M29008|Cfhr1|50702|complement factor H-related 1	NM_015780|Cfhr1|50702|complement factor H-related 1
mm9_v1_chr2_-_7002344_7002370	0.659654	HNF4A_NR2F1,2.p2	NM_001110229|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110230|Celf2|14007|CUGBP, Elav-like family member 2	NM_001160292|Celf2|14007|CUGBP, Elav-like family member 2	AK159996|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr15_-_10643273_10643318	0.657242	HNF4A_NR2F1,2.p2	AF274866|Rai14|75646|retinoic acid induced 14	BC052458|Rai14|75646|retinoic acid induced 14	NM_030690|Rai14|75646|retinoic acid induced 14	AK006172|Rai14|75646|retinoic acid induced 14
mm9_v1_chr15_+_82176533_82176625	0.656732	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_-_149562239_149562649	0.654154	HNF4A_NR2F1,2.p2	AK180828|Ctsd|13033|cathepsin D	AK183526|Ctsd|13033|cathepsin D
mm9_v1_chr18_+_35278553_35278581	0.65296	HNF4A_NR2F1,2.p2	NM_009818|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	X59990|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK148496|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC060174|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC068316|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	D90362|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	BC048163|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr2_+_13501725_13501846	0.650587	HNF4A_NR2F1,2.p2	AK205443|Vim|22352|vimentin
mm9_v1_chr7_-_31900188_31900326	0.649779	HNF4A_NR2F1,2.p2	BC138809|Hpn|15451|hepsin	BC145413|Hpn|15451|hepsin	AF030065|Hpn|15451|hepsin	AY234104|Hpn|15451|hepsin	AK002694|Hpn|15451|hepsin	NM_001110252|Hpn|15451|hepsin	NM_008281|Hpn|15451|hepsin
mm9_v1_chr3_-_115417932_115417972	0.649361	HNF4A_NR2F1,2.p2	AK004591|S1pr1|13609|sphingosine-1-phosphate receptor 1	NM_007901|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr7_+_28233013_28233084	0.649292	HNF4A_NR2F1,2.p2	BC006617|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))	AK153153|Blvrb|233016|biliverdin reductase B (flavin reductase (NADPH))
mm9_v1_chr3_-_115591014_115591051	0.648973	HNF4A_NR2F1,2.p2	AK081943|A930005H10Rik|68161|RIKEN cDNA A930005H10 gene	AK137339|A930005H10Rik|68161|RIKEN cDNA A930005H10 gene	AK020812|A930005H10Rik|68161|RIKEN cDNA A930005H10 gene
mm9_v1_chr3_-_117063317_117063389	0.648623	HNF4A_NR2F1,2.p2	BC082323|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137701|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137702|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK129149|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr9_+_20807312_20807429	0.648341	HNF4A_NR2F1,2.p2	AK002464|Mrpl4|66163|mitochondrial ribosomal protein L4	BC037064|Mrpl4|66163|mitochondrial ribosomal protein L4	BC061095|Mrpl4|66163|mitochondrial ribosomal protein L4	BC051685|Mrpl4|66163|mitochondrial ribosomal protein L4	BC023078|Mrpl4|66163|mitochondrial ribosomal protein L4	AB041599|Mrpl4|66163|mitochondrial ribosomal protein L4
mm9_v1_chr16_-_31314534_31314685	0.647453	HNF4A_NR2F1,2.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chrX_+_70884742_70884779	0.646903	HNF4A_NR2F1,2.p2	AK141667|Dusp9|75590|dual specificity phosphatase 9	AY316312|Dusp9|75590|dual specificity phosphatase 9	BC100309|Dusp9|75590|dual specificity phosphatase 9	NM_029352|Dusp9|75590|dual specificity phosphatase 9
mm9_v1_chr2_+_69588414_69588564	0.645418	HNF4A_NR2F1,2.p2	AK079931|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)	AK045812|Ppig|228005|peptidyl-prolyl isomerase G (cyclophilin G)
mm9_v1_chr12_-_102321835_102321908	0.644434	HNF4A_NR2F1,2.p2	AK051239|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	AK031629|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	AK156272|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	AK152480|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
mm9_v1_chr15_-_100253413_100253487	0.644372	HNF4A_NR2F1,2.p2	L33415|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AF029758|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AK148276|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AK083478|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	AK049856|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	BC019137|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	NM_001146161|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	NM_008732|Slc11a2|18174|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm9_v1_chr9_+_50561121_50561170	0.644326	HNF4A_NR2F1,2.p2	BC010768|Cryab|12955|crystallin, alpha B
mm9_v1_chr2_-_13192850_13192974	0.643749	HNF4A_NR2F1,2.p2	X63039|Rsu1|20163|Ras suppressor protein 1	BC003827|Rsu1|20163|Ras suppressor protein 1	NM_009105|Rsu1|20163|Ras suppressor protein 1	AK150011|Rsu1|20163|Ras suppressor protein 1	AK149835|Rsu1|20163|Ras suppressor protein 1	AK152655|Rsu1|20163|Ras suppressor protein 1	AK009288|Rsu1|20163|Ras suppressor protein 1	AK011857|Rsu1|20163|Ras suppressor protein 1	AK135491|Rsu1|20163|Ras suppressor protein 1	AK169076|Rsu1|20163|Ras suppressor protein 1
mm9_v1_chr15_-_95358989_95359075	0.6429	HNF4A_NR2F1,2.p2	AK039790|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr7_-_31840594_31840627	0.642235	HNF4A_NR2F1,2.p2	AF089734|Fxyd1|56188|FXYD domain-containing ion transport regulator 1
mm9_v1_chr19_-_10175969_10175986	0.642197	HNF4A_NR2F1,2.p2	BC057189|Fads2|56473|fatty acid desaturase 2
mm9_v1_chr1_+_177810908_177810944	0.64216	HNF4A_NR2F1,2.p2	NM_012012|Exo1|26909|exonuclease 1	AK028728|Exo1|26909|exonuclease 1	AK166425|Exo1|26909|exonuclease 1	BC006671|Exo1|26909|exonuclease 1
mm9_v1_chr11_-_115941908_115941939	0.641485	HNF4A_NR2F1,2.p2	AK208273|Wbp2|22378|WW domain binding protein 2
mm9_v1_chr3_-_86978431_86978668	0.640574	HNF4A_NR2F1,2.p2	BC023765|Kirrel|170643|kin of IRRE like (Drosophila)	AK158381|Kirrel|170643|kin of IRRE like (Drosophila)	NM_001170985|Kirrel|170643|kin of IRRE like (Drosophila)	NM_130867|Kirrel|170643|kin of IRRE like (Drosophila)
mm9_v1_chr3_-_104621135_104621250	0.639209	HNF4A_NR2F1,2.p2	AK173224|Mov10|17454|Moloney leukemia virus 10	BC053743|Mov10|17454|Moloney leukemia virus 10	X52574|Mov10|17454|Moloney leukemia virus 10	AK004542|Mov10|17454|Moloney leukemia virus 10	AK150204|Mov10|17454|Moloney leukemia virus 10	NM_001163441|Mov10|17454|Moloney leukemia virus 10	NM_008619|Mov10|17454|Moloney leukemia virus 10
mm9_v1_chr19_+_45092581_45092707	0.637621	HNF4A_NR2F1,2.p2	NM_001130526|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK081367|Lzts2|226154|leucine zipper, putative tumor suppressor 2	AK129446|Lzts2|226154|leucine zipper, putative tumor suppressor 2
mm9_v1_chr8_-_113426341_113426387	0.636934	HNF4A_NR2F1,2.p2	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr4_+_97444450_97444485	0.636131	HNF4A_NR2F1,2.p2	AK054310|Nfia|18027|nuclear factor I/A	AK137731|Nfia|18027|nuclear factor I/A
mm9_v1_chr2_-_28771940_28771959	0.634007	HNF4A_NR2F1,2.p2	NM_019446|Barhl1|54422|BarH-like 1 (Drosophila)	AB043980|Barhl1|54422|BarH-like 1 (Drosophila)	BC055731|Barhl1|54422|BarH-like 1 (Drosophila)	NM_001164186|Barhl1|54422|BarH-like 1 (Drosophila)
mm9_v1_chr6_-_65094862_65094901	0.633582	HNF4A_NR2F1,2.p2	D82072|Hpgds|54486|hematopoietic prostaglandin D synthase
mm9_v1_chr9_+_59504417_59504440	0.631318	HNF4A_NR2F1,2.p2	BC094663|Pkm2|18746|pyruvate kinase, muscle	D38379|Pkm2|18746|pyruvate kinase, muscle
mm9_v1_chr19_-_44210311_44210378	0.628648	HNF4A_NR2F1,2.p2	BC037640|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	BC027553|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK012163|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	AK139654|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)	NM_001081077|Cwf19l1|72502|CWF19-like 1, cell cycle control (S. pombe)
mm9_v1_chr17_-_27650285_27650347	0.628279	HNF4A_NR2F1,2.p2	BC072635|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr2_-_73224394_73224535	0.627711	HNF4A_NR2F1,2.p2	AK090081|Gpr155|68526|G protein-coupled receptor 155	BC115698|Gpr155|68526|G protein-coupled receptor 155	AK089436|Gpr155|68526|G protein-coupled receptor 155	HM161763|Gpr155|68526|G protein-coupled receptor 155	HM161764|Gpr155|68526|G protein-coupled receptor 155	HM161765|Gpr155|68526|G protein-coupled receptor 155	HM161766|Gpr155|68526|G protein-coupled receptor 155	NM_001080707|Gpr155|68526|G protein-coupled receptor 155	NM_001190297|Gpr155|68526|G protein-coupled receptor 155
mm9_v1_chr7_+_73224518_73224593	0.626439	HNF4A_NR2F1,2.p2	NM_024439|H47|109815|histocompatibility 47	BC011091|H47|109815|histocompatibility 47	AK005204|H47|109815|histocompatibility 47	BC096566|H47|109815|histocompatibility 47	AF335543|H47|109815|histocompatibility 47
mm9_v1_chr3_+_116216008_116216058	0.624805	HNF4A_NR2F1,2.p2	AK075831|Dbt|13171|dihydrolipoamide branched chain transacylase E2	BC055890|Dbt|13171|dihydrolipoamide branched chain transacylase E2	L42996|Dbt|13171|dihydrolipoamide branched chain transacylase E2
mm9_v1_chr5_-_4104696_4104696	0.623737	HNF4A_NR2F1,2.p2	NM_020010|Cyp51|13121|cytochrome P450, family 51
mm9_v1_chr17_-_34987110_34987130	0.62281	HNF4A_NR2F1,2.p2	AK169864|Skiv2l|108077|superkiller viralicidic activity 2-like (S. cerevisiae)	BC065999|Skiv2l|108077|superkiller viralicidic activity 2-like (S. cerevisiae)
mm9_v1_chr5_+_138011078_138011117	0.622597	HNF4A_NR2F1,2.p2	NM_015799|Trfr2|50765|transferrin receptor 2	AK004848|Trfr2|50765|transferrin receptor 2	AK004965|Trfr2|50765|transferrin receptor 2
mm9_v1_chr9_-_58097422_58097566	0.621642	HNF4A_NR2F1,2.p2	AK193824|Pml|18854|promyelocytic leukemia	AK156054|Pml|18854|promyelocytic leukemia	AK157346|Pml|18854|promyelocytic leukemia	AK156279|Pml|18854|promyelocytic leukemia	U33626|Pml|18854|promyelocytic leukemia	AK156175|Pml|18854|promyelocytic leukemia	BC020990|Pml|18854|promyelocytic leukemia	AK137538|Pml|18854|promyelocytic leukemia	AK157035|Pml|18854|promyelocytic leukemia
mm9_v1_chr8_+_128193717_128193790	0.621392	HNF4A_NR2F1,2.p2	NM_028908|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK042358|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK016632|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK080043|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene	AK220388|4933403G14Rik|74393|RIKEN cDNA 4933403G14 gene
mm9_v1_chr6_-_72310580_72310656	0.621194	HNF4A_NR2F1,2.p2	AK195168|Rnf181|66510|ring finger protein 181	AK202921|Rnf181|66510|ring finger protein 181	AK209718|Rnf181|66510|ring finger protein 181	AK211264|Rnf181|66510|ring finger protein 181	AK211423|Rnf181|66510|ring finger protein 181	AK213249|Rnf181|66510|ring finger protein 181
mm9_v1_chr15_-_78299035_78299081	0.616504	HNF4A_NR2F1,2.p2	BC057674|Tmprss6|71753|transmembrane serine protease 6	AY240929|Tmprss6|71753|transmembrane serine protease 6	BC029645|Tmprss6|71753|transmembrane serine protease 6	NM_027902|Tmprss6|71753|transmembrane serine protease 6
mm9_v1_chr3_-_85946524_85946612	0.61392	HNF4A_NR2F1,2.p2	AK150796|Rps3a|20091|ribosomal protein S3A	AK151982|Rps3a|20091|ribosomal protein S3A	NM_016959|Rps3a|20091|ribosomal protein S3A
mm9_v1_chr7_-_133943848_133943969	0.612151	HNF4A_NR2F1,2.p2	AK154295|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177308|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr2_-_60122146_60122212	0.609995	HNF4A_NR2F1,2.p2	AK002812|Cd302|66205|CD302 antigen
mm9_v1_chr19_+_6341137_6341249	0.609386	HNF4A_NR2F1,2.p2	AK154164|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	AK154323|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	BC116286|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	BC116287|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	NM_009006|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2	U50595|Map4k2|26412|mitogen-activated protein kinase kinase kinase kinase 2
mm9_v1_chr2_+_90936845_90937066	0.609108	HNF4A_NR2F1,2.p2	AK154945|Sfpi1|20375|SFFV proviral integration 1	AK155085|Sfpi1|20375|SFFV proviral integration 1	AK153524|Sfpi1|20375|SFFV proviral integration 1	AK142246|Sfpi1|20375|SFFV proviral integration 1	M38252|Sfpi1|20375|SFFV proviral integration 1	NM_011355|Sfpi1|20375|SFFV proviral integration 1	M32370|Sfpi1|20375|SFFV proviral integration 1	BC003815|Sfpi1|20375|SFFV proviral integration 1	L03215|Sfpi1|20375|SFFV proviral integration 1
mm9_v1_chr7_+_31337558_31337578	0.607911	HNF4A_NR2F1,2.p2	BC051228|Hspb6|243912|heat shock protein, alpha-crystallin-related, B6
mm9_v1_chr8_+_58773321_58773362	0.607073	HNF4A_NR2F1,2.p2	NM_008278|Hpgd|15446|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm9_v1_chr2_+_174241304_174241382	0.606758	HNF4A_NR2F1,2.p2	AJ238742|Th1l|57314|TH1-like homolog (Drosophila)	NM_020580|Th1l|57314|TH1-like homolog (Drosophila)	AK049418|Th1l|57314|TH1-like homolog (Drosophila)	BC006959|Th1l|57314|TH1-like homolog (Drosophila)	BC031747|Th1l|57314|TH1-like homolog (Drosophila)	AJ238743|Th1l|57314|TH1-like homolog (Drosophila)	AK159866|Th1l|57314|TH1-like homolog (Drosophila)	AK010360|Th1l|57314|TH1-like homolog (Drosophila)	AJ238741|Th1l|57314|TH1-like homolog (Drosophila)
mm9_v1_chr8_-_97220127_97220176	0.605037	HNF4A_NR2F1,2.p2	AK018198|Pllp|67801|plasma membrane proteolipid	AK032540|Pllp|67801|plasma membrane proteolipid	BC024534|Pllp|67801|plasma membrane proteolipid	AK002477|Pllp|67801|plasma membrane proteolipid	NM_026385|Pllp|67801|plasma membrane proteolipid
mm9_v1_chr5_+_8893700_8893720	0.604481	HNF4A_NR2F1,2.p2	J03398|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK144024|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK165484|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	NM_008830|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4
mm9_v1_chr7_+_134614926_134615014	0.601632	HNF4A_NR2F1,2.p2	
mm9_v1_chr16_-_94511842_94511914	0.601014	HNF4A_NR2F1,2.p2	AK164351|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	AK052424|Hlcs|110948|holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
mm9_v1_chr4_-_122817165_122817212	0.600809	HNF4A_NR2F1,2.p2	AF182825|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	BC045154|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	AK008177|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	NM_019489|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)	AK042165|Ppie|56031|peptidylprolyl isomerase E (cyclophilin E)
mm9_v1_chr4_+_63219786_63219927	0.600721	HNF4A_NR2F1,2.p2	AK144990|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	AK030466|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	AK206525|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene	AK161160|6330416G13Rik|230279|RIKEN cDNA 6330416G13 gene
mm9_v1_chr6_+_113102884_113103027	0.600319	HNF4A_NR2F1,2.p2	AK088328|Setd5|72895|SET domain containing 5
mm9_v1_chr15_-_98493302_98493343	0.600269	HNF4A_NR2F1,2.p2	AK014820|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	BC049928|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	NM_001080981|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	AK014272|Ddx23|74351|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
mm9_v1_chr4_+_41707341_41707397	0.599868	HNF4A_NR2F1,2.p2	AK146742|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	AK155407|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	AK159559|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	U14412|Il11ra1|16157|interleukin 11 receptor, alpha chain 1	BC004619|Il11ra1|16157|interleukin 11 receptor, alpha chain 1
mm9_v1_chr19_+_9004106_9004187	0.599523	HNF4A_NR2F1,2.p2	BC023878|Eml3|225898|echinoderm microtubule associated protein like 3	BC022146|Eml3|225898|echinoderm microtubule associated protein like 3	NM_144872|Eml3|225898|echinoderm microtubule associated protein like 3
mm9_v1_chr16_+_57121995_57122259	0.599364	HNF4A_NR2F1,2.p2	AK181660|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK192263|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK195397|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK196165|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK202736|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr4_+_140462254_140462341	0.59829	HNF4A_NR2F1,2.p2	NM_008812|Padi2|18600|peptidyl arginine deiminase, type II	AK158382|Padi2|18600|peptidyl arginine deiminase, type II	AK171275|Padi2|18600|peptidyl arginine deiminase, type II	AK148156|Padi2|18600|peptidyl arginine deiminase, type II	AK154814|Padi2|18600|peptidyl arginine deiminase, type II	BC049947|Padi2|18600|peptidyl arginine deiminase, type II	BC040350|Padi2|18600|peptidyl arginine deiminase, type II	D16580|Padi2|18600|peptidyl arginine deiminase, type II
mm9_v1_chr11_-_33413715_33413767	0.598096	HNF4A_NR2F1,2.p2	NM_023146|Ranbp17|66011|RAN binding protein 17
mm9_v1_chr5_-_46247789_46247790	0.597786	HNF4A_NR2F1,2.p2	AB076078|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	AK042567|Lcorl|209707|ligand dependent nuclear receptor corepressor-like	NM_172153|Lcorl|209707|ligand dependent nuclear receptor corepressor-like
mm9_v1_chr9_-_58097569_58097598	0.597729	HNF4A_NR2F1,2.p2	AK052305|Pml|18854|promyelocytic leukemia	AK054135|Pml|18854|promyelocytic leukemia	AK028044|Pml|18854|promyelocytic leukemia	NM_008884|Pml|18854|promyelocytic leukemia	NM_178087|Pml|18854|promyelocytic leukemia
mm9_v1_chr17_+_57201623_57201743	0.596979	HNF4A_NR2F1,2.p2	AK077528|Crb3|224912|crumbs homolog 3 (Drosophila)	AK167279|Crb3|224912|crumbs homolog 3 (Drosophila)	BC024462|Crb3|224912|crumbs homolog 3 (Drosophila)	NM_177638|Crb3|224912|crumbs homolog 3 (Drosophila)
mm9_v1_chr8_-_74035667_74035683	0.594818	HNF4A_NR2F1,2.p2	NM_032398|Plvap|84094|plasmalemma vesicle associated protein
mm9_v1_chr17_-_35838974_35838988	0.589485	HNF4A_NR2F1,2.p2	AK138698|Ddr1|12305|discoidin domain receptor family, member 1	NM_001198831|Ddr1|12305|discoidin domain receptor family, member 1
mm9_v1_chr7_-_134351860_134352145	0.589	HNF4A_NR2F1,2.p2	AK047320|Tbc1d10b|68449|TBC1 domain family, member 10b	AK047327|Tbc1d10b|68449|TBC1 domain family, member 10b	NM_144522|Tbc1d10b|68449|TBC1 domain family, member 10b
mm9_v1_chr13_-_21845695_21845780	0.586667	HNF4A_NR2F1,2.p2	NM_178183|Hist1h2ak|319169|histone cluster 1, H2ak	BC119335|Hist1h2ak|319169|histone cluster 1, H2ak
mm9_v1_chr18_+_77424573_77424607	0.586175	HNF4A_NR2F1,2.p2	AK013542|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	NM_013666|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	NM_153124|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	BC034855|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm9_v1_chr2_+_129418533_129418826	0.585889	HNF4A_NR2F1,2.p2	AK159617|Sirpa|19261|signal-regulatory protein alpha	NM_001177646|Sirpa|19261|signal-regulatory protein alpha
mm9_v1_chrX_+_20126893_20126943	0.585417	HNF4A_NR2F1,2.p2	AK146465|Rgn|19733|regucalcin	BC012710|Rgn|19733|regucalcin	NM_009060|Rgn|19733|regucalcin	U28937|Rgn|19733|regucalcin
mm9_v1_chr5_+_114222723_114222894	0.583799	HNF4A_NR2F1,2.p2	AK039834|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	AK157864|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	AK009421|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	AK083247|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	AK009021|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	NM_025526|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	BC048409|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	BC096049|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)	BC028800|Iscu|66383|IscU iron-sulfur cluster scaffold homolog (E. coli)
mm9_v1_chr12_+_53604952_53605039	0.582594	HNF4A_NR2F1,2.p2	AK131622|Arhgap5|11855|Rho GTPase activating protein 5	AK041016|Arhgap5|11855|Rho GTPase activating protein 5
mm9_v1_chr12_+_60232459_60232573	0.582318	HNF4A_NR2F1,2.p2	AK208297|Ctage5|217615|CTAGE family, member 5
mm9_v1_chr11_-_88816679_88816773	0.582043	HNF4A_NR2F1,2.p2	AK050181|Scpep1|74617|serine carboxypeptidase 1	AK153485|Scpep1|74617|serine carboxypeptidase 1	BC021399|Scpep1|74617|serine carboxypeptidase 1	AF330052|Scpep1|74617|serine carboxypeptidase 1	AK153225|Scpep1|74617|serine carboxypeptidase 1	BC004847|Scpep1|74617|serine carboxypeptidase 1	AK014680|Scpep1|74617|serine carboxypeptidase 1	NM_029023|Scpep1|74617|serine carboxypeptidase 1
mm9_v1_chr6_+_54222814_54222856	0.581523	HNF4A_NR2F1,2.p2	BC051139|Chn2|69993|chimerin (chimaerin) 2	NM_023543|Chn2|69993|chimerin (chimaerin) 2	BC141060|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr1_-_45982242_45982463	0.58046	HNF4A_NR2F1,2.p2	AK008700|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF231120|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF215637|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AF226613|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	BC003438|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK159855|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK144780|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK147137|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK159294|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK167608|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	NM_016917|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1	AK033987|Slc40a1|53945|solute carrier family 40 (iron-regulated transporter), member 1
mm9_v1_chr15_+_58720783_58720964	0.580456	HNF4A_NR2F1,2.p2	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr10_-_79373177_79373432	0.580275	HNF4A_NR2F1,2.p2	AK206142|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK206739|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK212119|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK180841|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK179327|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK207391|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218659|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK218931|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr11_+_68884268_68884388	0.579886	HNF4A_NR2F1,2.p2	NM_025838|Tmem107|66910|transmembrane protein 107	NM_028336|Tmem107|66910|transmembrane protein 107	AK012938|Tmem107|66910|transmembrane protein 107	AK154279|Tmem107|66910|transmembrane protein 107	AK003403|Tmem107|66910|transmembrane protein 107	AK002804|Tmem107|66910|transmembrane protein 107	BC096686|Tmem107|66910|transmembrane protein 107	BC137584|Tmem107|66910|transmembrane protein 107	BC120499|Tmem107|66910|transmembrane protein 107
mm9_v1_chr8_-_13200534_13200625	0.578403	HNF4A_NR2F1,2.p2	AK017251|Grtp1|66790|GH regulated TBC protein 1	AK017197|Grtp1|66790|GH regulated TBC protein 1	AK044437|Grtp1|66790|GH regulated TBC protein 1	AK082863|Grtp1|66790|GH regulated TBC protein 1	AK149322|Grtp1|66790|GH regulated TBC protein 1	NM_025768|Grtp1|66790|GH regulated TBC protein 1	AK007905|Grtp1|66790|GH regulated TBC protein 1
mm9_v1_chr19_+_55816320_55816547	0.576043	HNF4A_NR2F1,2.p2	AK132465|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	AK035059|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box	AF107298|Tcf7l2|21416|transcription factor 7-like 2, T-cell specific, HMG-box
mm9_v1_chr7_-_52347489_52347600	0.575882	HNF4A_NR2F1,2.p2	BC092069|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK077943|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK082762|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK086705|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	AK132143|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	BC025602|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	BC055903|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain	NM_026555|Rcn3|52377|reticulocalbin 3, EF-hand calcium binding domain
mm9_v1_chr3_+_27215949_27216031	0.573718	HNF4A_NR2F1,2.p2	AK153581|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	AK144931|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	AK142960|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	AK157633|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	NM_009425|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	U37522|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	BC138807|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	BC138808|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10	BC011469|Tnfsf10|22035|tumor necrosis factor (ligand) superfamily, member 10
mm9_v1_chr8_+_94190341_94190551	0.573553	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_-_157030236_157030281	0.570388	HNF4A_NR2F1,2.p2	BC060124|Rbl1|19650|retinoblastoma-like 1 (p107)	U33320|Rbl1|19650|retinoblastoma-like 1 (p107)	AK156055|Rbl1|19650|retinoblastoma-like 1 (p107)	U27177|Rbl1|19650|retinoblastoma-like 1 (p107)	U27178|Rbl1|19650|retinoblastoma-like 1 (p107)	AK033402|Rbl1|19650|retinoblastoma-like 1 (p107)	AK147064|Rbl1|19650|retinoblastoma-like 1 (p107)	NM_001139516|Rbl1|19650|retinoblastoma-like 1 (p107)	NM_011249|Rbl1|19650|retinoblastoma-like 1 (p107)
mm9_v1_chr2_+_155207581_155207616	0.56994	HNF4A_NR2F1,2.p2	AJ297793|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK146589|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	BC043086|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	NM_178111|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK149495|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr5_-_113709569_113709620	0.569769	HNF4A_NR2F1,2.p2	AK167632|Sgsm1|52850|small G protein signaling modulator 1	AK010756|Sgsm1|52850|small G protein signaling modulator 1	AK051018|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr7_+_100023762_100023966	0.569267	HNF4A_NR2F1,2.p2	NM_028243|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011112|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK051677|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK166282|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK011816|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC089575|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	AK054462|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC055022|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)	BC026424|Prcp|72461|prolylcarboxypeptidase (angiotensinase C)
mm9_v1_chr15_-_78004452_78004551	0.569004	HNF4A_NR2F1,2.p2	AK011196|Ift27|67042|intraflagellar transport 27 homolog (Chlamydomonas)	BC017514|Ift27|67042|intraflagellar transport 27 homolog (Chlamydomonas)	NM_025931|Ift27|67042|intraflagellar transport 27 homolog (Chlamydomonas)
mm9_v1_chr16_+_33056538_33056630	0.568563	HNF4A_NR2F1,2.p2	NM_001130485|Rpl35a|57808|ribosomal protein L35A	AK046386|Rpl35a|57808|ribosomal protein L35A	AK160963|Rpl35a|57808|ribosomal protein L35A	NM_001130484|Rpl35a|57808|ribosomal protein L35A	AK028214|Rpl35a|57808|ribosomal protein L35A	AK003063|Rpl35a|57808|ribosomal protein L35A	BC100599|Rpl35a|57808|ribosomal protein L35A	AK010692|Rpl35a|57808|ribosomal protein L35A	BC086771|Rpl35a|57808|ribosomal protein L35A	BC090255|Rpl35a|57808|ribosomal protein L35A	NM_021338|Rpl35a|57808|ribosomal protein L35A	BC027223|Rpl35a|57808|ribosomal protein L35A
mm9_v1_chr9_+_96619800_96619904	0.56461	HNF4A_NR2F1,2.p2	AK081067|Gm6328|622512|predicted gene 6328
mm9_v1_chr14_+_73952438_73952612	0.563297	HNF4A_NR2F1,2.p2	AK016060|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK081965|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK088801|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK150594|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK152783|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160130|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	NM_011506|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK153198|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC056353|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC057605|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK132762|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160652|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK005273|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr2_+_155213904_155214229	0.563162	HNF4A_NR2F1,2.p2	AK194878|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK201306|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212674|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK213253|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK188182|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK191290|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK194673|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK204807|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK200413|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212877|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr4_+_118100682_118100801	0.562242	HNF4A_NR2F1,2.p2	NM_001039175|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	NM_019422|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK156003|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK171217|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK135348|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	BC096673|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	AK003743|Elovl1|54325|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm9_v1_chr13_-_101322557_101322594	0.562217	HNF4A_NR2F1,2.p2	AK033532|Ocln|18260|occludin	AK019880|Ocln|18260|occludin	AK145798|Ocln|18260|occludin
mm9_v1_chr1_+_74331503_74331655	0.559919	HNF4A_NR2F1,2.p2	AF318058|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC116236|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC116237|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	NM_001039509|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	NM_025580|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC008274|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC058945|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK012976|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK173125|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK009545|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AY039041|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AY299972|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK166548|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia
mm9_v1_chr11_-_70501430_70501474	0.559565	HNF4A_NR2F1,2.p2	AK039670|Camta2|216874|calmodulin binding transcription activator 2	BC049133|Camta2|216874|calmodulin binding transcription activator 2	BC056395|Camta2|216874|calmodulin binding transcription activator 2	AK169118|Camta2|216874|calmodulin binding transcription activator 2	AK150186|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr9_+_21807887_21807962	0.559367	HNF4A_NR2F1,2.p2	AK203731|Prkcsh|19089|protein kinase C substrate 80K-H
mm9_v1_chr11_+_44430784_44430845	0.558228	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_+_108199200_108199252	0.555607	HNF4A_NR2F1,2.p2	BC132277|Amt|434437|aminomethyltransferase	BC132279|Amt|434437|aminomethyltransferase	NM_001013814|Amt|434437|aminomethyltransferase
mm9_v1_chr4_+_134486863_134486909	0.554914	HNF4A_NR2F1,2.p2	AK003787|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	AY033432|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	NM_026780|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	AK152794|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)	BC051484|Syf2|68592|SYF2 homolog, RNA splicing factor (S. cerevisiae)
mm9_v1_chr15_-_95359136_95359208	0.553448	HNF4A_NR2F1,2.p2	NM_016743|Nell2|54003|NEL-like 2 (chicken)
mm9_v1_chr10_-_75243786_75243866	0.552992	HNF4A_NR2F1,2.p2	BC003903|Gstt3|103140|glutathione S-transferase, theta 3	AK168226|Gstt3|103140|glutathione S-transferase, theta 3	AK138669|Gstt3|103140|glutathione S-transferase, theta 3	AK154161|Gstt3|103140|glutathione S-transferase, theta 3
mm9_v1_chr6_+_29997972_29998071	0.552161	HNF4A_NR2F1,2.p2	AK082580|Nrf1|18181|nuclear respiratory factor 1	NM_001164226|Nrf1|18181|nuclear respiratory factor 1	NM_001164227|Nrf1|18181|nuclear respiratory factor 1	NM_001164228|Nrf1|18181|nuclear respiratory factor 1	NM_001164230|Nrf1|18181|nuclear respiratory factor 1	NM_010938|Nrf1|18181|nuclear respiratory factor 1	AK029034|Nrf1|18181|nuclear respiratory factor 1	AK014494|Nrf1|18181|nuclear respiratory factor 1	AK036604|Nrf1|18181|nuclear respiratory factor 1	AK037697|Nrf1|18181|nuclear respiratory factor 1	AF098077|Nrf1|18181|nuclear respiratory factor 1	AF064728|Nrf1|18181|nuclear respiratory factor 1	AK050861|Nrf1|18181|nuclear respiratory factor 1	AK134483|Nrf1|18181|nuclear respiratory factor 1
mm9_v1_chr5_+_130698192_130698294	0.549263	HNF4A_NR2F1,2.p2	AK142176|0610007L01Rik|71667|RIKEN cDNA 0610007L01 gene	AK171152|0610007L01Rik|71667|RIKEN cDNA 0610007L01 gene	AK002297|0610007L01Rik|71667|RIKEN cDNA 0610007L01 gene	AK171607|0610007L01Rik|71667|RIKEN cDNA 0610007L01 gene	BC033455|0610007L01Rik|71667|RIKEN cDNA 0610007L01 gene
mm9_v1_chr11_-_119971500_119971623	0.548849	HNF4A_NR2F1,2.p2	AK195379|Slc38a10|72055|solute carrier family 38, member 10	AK176940|Slc38a10|72055|solute carrier family 38, member 10	AK182790|Slc38a10|72055|solute carrier family 38, member 10	BC055017|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr5_+_36807807_36807839	0.548705	HNF4A_NR2F1,2.p2	AK161688|Grpel1|17713|GrpE-like 1, mitochondrial	AK048732|Grpel1|17713|GrpE-like 1, mitochondrial	NM_024478|Grpel1|17713|GrpE-like 1, mitochondrial	AK089113|Grpel1|17713|GrpE-like 1, mitochondrial	AK050445|Grpel1|17713|GrpE-like 1, mitochondrial
mm9_v1_chr11_+_61890494_61890602	0.546676	HNF4A_NR2F1,2.p2	AK050982|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	AK220465|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	NM_001029936|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chr11_+_77992224_77992267	0.546522	HNF4A_NR2F1,2.p2	AK002265|Tlcd1|68385|TLC domain containing 1	AK161721|Tlcd1|68385|TLC domain containing 1	AK002703|Tlcd1|68385|TLC domain containing 1	BC005702|Tlcd1|68385|TLC domain containing 1	NM_026708|Tlcd1|68385|TLC domain containing 1
mm9_v1_chr10_+_79460226_79460359	0.546062	HNF4A_NR2F1,2.p2	BC145120|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7	BC150708|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7	AF287141|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7	NM_013850|Abca7|27403|ATP-binding cassette, sub-family A (ABC1), member 7
mm9_v1_chr11_+_98912766_98913266	0.543623	HNF4A_NR2F1,2.p2	AK197851|Igfbp4|16010|insulin-like growth factor binding protein 4	AK198090|Igfbp4|16010|insulin-like growth factor binding protein 4	AK200553|Igfbp4|16010|insulin-like growth factor binding protein 4	AK200478|Igfbp4|16010|insulin-like growth factor binding protein 4	AK003243|Igfbp4|16010|insulin-like growth factor binding protein 4	S80566|Igfbp4|16010|insulin-like growth factor binding protein 4	AK192700|Igfbp4|16010|insulin-like growth factor binding protein 4	AK188474|Igfbp4|16010|insulin-like growth factor binding protein 4
mm9_v1_chr6_-_119338677_119338775	0.542909	HNF4A_NR2F1,2.p2	AK148295|Adipor2|68465|adiponectin receptor 2
mm9_v1_chr7_-_29941186_29941253	0.542131	HNF4A_NR2F1,2.p2	BC058765|Fam98c|73833|family with sequence similarity 98, member C	AK166139|Fam98c|73833|family with sequence similarity 98, member C	AK003496|Fam98c|73833|family with sequence similarity 98, member C	AK138395|Fam98c|73833|family with sequence similarity 98, member C	AK171108|Fam98c|73833|family with sequence similarity 98, member C	AK080790|Fam98c|73833|family with sequence similarity 98, member C	NM_001146023|Fam98c|73833|family with sequence similarity 98, member C
mm9_v1_chr11_-_78564918_78565234	0.541728	HNF4A_NR2F1,2.p2	AY445047|Fam58b|69109|family with sequence similarity 58, member B	AK007413|Fam58b|69109|family with sequence similarity 58, member B	AK032408|Fam58b|69109|family with sequence similarity 58, member B	BC027022|Fam58b|69109|family with sequence similarity 58, member B	NM_197989|Fam58b|69109|family with sequence similarity 58, member B
mm9_v1_chr2_+_90780665_90780699	0.54121	HNF4A_NR2F1,2.p2	BC021393|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr4_+_118081908_118082012	0.540054	HNF4A_NR2F1,2.p2	AK011080|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	NM_020000|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	NM_173719|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK147032|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK005422|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK148025|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	BC051683|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AK008759|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	BC021870|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)	AB041805|Med8|80509|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm9_v1_chr7_-_4704436_4704695	0.53982	HNF4A_NR2F1,2.p2	CT010366|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC048670|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183406|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AK160152|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125562|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC125564|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC145201|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107296|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	BC107297|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	AY152400|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2	NM_183405|Cox6b2|333182|cytochrome c oxidase subunit VIb polypeptide 2
mm9_v1_chr7_+_148401781_148401819	0.535285	HNF4A_NR2F1,2.p2	AK002243|Rassf7|66985|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm9_v1_chr8_-_74035629_74035657	0.534918	HNF4A_NR2F1,2.p2	AF348403|Plvap|84094|plasmalemma vesicle associated protein	AF369900|Plvap|84094|plasmalemma vesicle associated protein
mm9_v1_chr7_-_20283542_20283606	0.53405	HNF4A_NR2F1,2.p2	CT010212|Apoe|11816|apolipoprotein E	CT010356|Apoe|11816|apolipoprotein E	M12414|Apoe|11816|apolipoprotein E
mm9_v1_chrX_-_71269083_71269215	0.533897	HNF4A_NR2F1,2.p2	U56773|Irak1|16179|interleukin-1 receptor-associated kinase 1	AB088370|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK045958|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK052933|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK144879|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK143694|Irak1|16179|interleukin-1 receptor-associated kinase 1
mm9_v1_chr4_-_134323845_134323948	0.533039	HNF4A_NR2F1,2.p2	BC021467|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK159800|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC066808|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC067411|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK167290|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK029008|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK148340|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	NM_145554|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1
mm9_v1_chr2_-_122194653_122194653	0.530996	HNF4A_NR2F1,2.p2	NM_001013829|Shf|435684|Src homology 2 domain containing F
mm9_v1_chr3_+_135488617_135488753	0.53082	HNF4A_NR2F1,2.p2	AK085740|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135149|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_001135150|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr4_+_137549366_137549416	0.530595	HNF4A_NR2F1,2.p2	AK019693|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3	AK054068|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3	BC072600|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3	NM_172703|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3	AK046639|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3	BC082549|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3	BC079885|Eif4g3|230861|eukaryotic translation initiation factor 4 gamma, 3
mm9_v1_chr9_+_108698323_108698461	0.530326	HNF4A_NR2F1,2.p2	BC039922|Ip6k2|76500|inositol hexaphosphate kinase 2	NM_029634|Ip6k2|76500|inositol hexaphosphate kinase 2	BC060059|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr4_+_128670474_128670574	0.529755	HNF4A_NR2F1,2.p2	AK050133|Ak2|11637|adenylate kinase 2	AK167797|Ak2|11637|adenylate kinase 2	NM_001033966|Ak2|11637|adenylate kinase 2	AK168148|Ak2|11637|adenylate kinase 2	AB020202|Ak2|11637|adenylate kinase 2	AK168056|Ak2|11637|adenylate kinase 2	AK010936|Ak2|11637|adenylate kinase 2	AK010951|Ak2|11637|adenylate kinase 2	AK077519|Ak2|11637|adenylate kinase 2	BC008610|Ak2|11637|adenylate kinase 2	NM_016895|Ak2|11637|adenylate kinase 2	AK166976|Ak2|11637|adenylate kinase 2
mm9_v1_chr11_+_95353403_95353542	0.52932	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_154692935_154692951	0.527723	HNF4A_NR2F1,2.p2	AK048403|C130057N11Rik|99061|RIKEN cDNA C130057N11 gene
mm9_v1_chr1_-_173987681_173987726	0.526929	HNF4A_NR2F1,2.p2	M82874|Nhlh1|18071|nescient helix loop helix 1	BC051018|Nhlh1|18071|nescient helix loop helix 1	BC054760|Nhlh1|18071|nescient helix loop helix 1	AK149315|Nhlh1|18071|nescient helix loop helix 1	NM_010916|Nhlh1|18071|nescient helix loop helix 1
mm9_v1_chr4_+_44994235_44994334	0.52576	HNF4A_NR2F1,2.p2	AK004307|Grhpr|76238|glyoxylate reductase/hydroxypyruvate reductase	AK018293|Grhpr|76238|glyoxylate reductase/hydroxypyruvate reductase	BC010194|Grhpr|76238|glyoxylate reductase/hydroxypyruvate reductase	NM_080289|Grhpr|76238|glyoxylate reductase/hydroxypyruvate reductase	AK168351|Grhpr|76238|glyoxylate reductase/hydroxypyruvate reductase	AY113690|Grhpr|76238|glyoxylate reductase/hydroxypyruvate reductase	AK172201|Grhpr|76238|glyoxylate reductase/hydroxypyruvate reductase
mm9_v1_chr6_+_34659440_34659540	0.525705	HNF4A_NR2F1,2.p2	NM_145575|Cald1|109624|caldesmon 1	BC019435|Cald1|109624|caldesmon 1	AK014755|Cald1|109624|caldesmon 1	AK160593|Cald1|109624|caldesmon 1
mm9_v1_chr17_-_34880784_34880841	0.525679	HNF4A_NR2F1,2.p2	BC158005|C4b|12268|complement component 4B (Childo blood group)	BC150743|C4b|12268|complement component 4B (Childo blood group)	BC039141|C4b|12268|complement component 4B (Childo blood group)	BC067394|C4b|12268|complement component 4B (Childo blood group)	BC067409|C4b|12268|complement component 4B (Childo blood group)	BC055297|C4b|12268|complement component 4B (Childo blood group)	AK172637|C4b|12268|complement component 4B (Childo blood group)	AK157954|C4b|12268|complement component 4B (Childo blood group)	AK158256|C4b|12268|complement component 4B (Childo blood group)	AK158475|C4b|12268|complement component 4B (Childo blood group)	AK171644|C4b|12268|complement component 4B (Childo blood group)	M11729|C4b|12268|complement component 4B (Childo blood group)	NM_009780|C4b|12268|complement component 4B (Childo blood group)
mm9_v1_chrX_-_71491851_71491901	0.525361	HNF4A_NR2F1,2.p2	AK044856|Flna|192176|filamin, alpha	BC151024|Flna|192176|filamin, alpha	NM_010227|Flna|192176|filamin, alpha
mm9_v1_chr1_+_74283381_74283464	0.524381	HNF4A_NR2F1,2.p2	AK083263|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr1_-_65169708_65169766	0.523504	HNF4A_NR2F1,2.p2	AK164708|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	BC137870|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	AK085417|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene	NM_175293|D630023F18Rik|98303|RIKEN cDNA D630023F18 gene
mm9_v1_chr4_-_43575250_43575277	0.523376	HNF4A_NR2F1,2.p2	BC055348|Tln1|21894|talin 1
mm9_v1_chr6_-_112646587_112646665	0.522676	HNF4A_NR2F1,2.p2	AF205278|Rad18|58186|RAD18 homolog (S. cerevisiae)	BC011120|Rad18|58186|RAD18 homolog (S. cerevisiae)	AK048975|Rad18|58186|RAD18 homolog (S. cerevisiae)	AK028505|Rad18|58186|RAD18 homolog (S. cerevisiae)	AK012795|Rad18|58186|RAD18 homolog (S. cerevisiae)	AK030043|Rad18|58186|RAD18 homolog (S. cerevisiae)	NM_001167730|Rad18|58186|RAD18 homolog (S. cerevisiae)	NM_021385|Rad18|58186|RAD18 homolog (S. cerevisiae)
mm9_v1_chr11_+_75300278_75300323	0.52082	HNF4A_NR2F1,2.p2	NM_138659|Prpf8|192159|pre-mRNA processing factor 8	AK041017|Prpf8|192159|pre-mRNA processing factor 8
mm9_v1_chr15_+_84753875_84753883	0.519665	HNF4A_NR2F1,2.p2	AK133371|Nup50|18141|nucleoporin 50
mm9_v1_chr8_-_87186691_87186755	0.515596	HNF4A_NR2F1,2.p2	AK172332|Ier2|15936|immediate early response 2	BC002067|Ier2|15936|immediate early response 2	AK170433|Ier2|15936|immediate early response 2	AK032692|Ier2|15936|immediate early response 2	AK144601|Ier2|15936|immediate early response 2	AK150860|Ier2|15936|immediate early response 2	AK152747|Ier2|15936|immediate early response 2	M31042|Ier2|15936|immediate early response 2	NM_010499|Ier2|15936|immediate early response 2	M59821|Ier2|15936|immediate early response 2
mm9_v1_chr1_+_12708582_12708625	0.515411	HNF4A_NR2F1,2.p2	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr2_-_154900188_154900232	0.515275	HNF4A_NR2F1,2.p2	AK151097|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK153421|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK154302|Ahcy|269378|S-adenosylhomocysteine hydrolase	AK169331|Ahcy|269378|S-adenosylhomocysteine hydrolase	NM_016661|Ahcy|269378|S-adenosylhomocysteine hydrolase
mm9_v1_chr5_+_65194627_65194653	0.514788	HNF4A_NR2F1,2.p2	AK157576|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr11_+_61318645_61318683	0.511109	HNF4A_NR2F1,2.p2	AK010355|B9d1|27078|B9 protein domain 1	AB030483|B9d1|27078|B9 protein domain 1	NM_013717|B9d1|27078|B9 protein domain 1	AK003038|B9d1|27078|B9 protein domain 1	AK131701|B9d1|27078|B9 protein domain 1
mm9_v1_chr11_+_70265405_70265432	0.507803	HNF4A_NR2F1,2.p2	AK008153|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)	BC025057|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)	NM_025397|Med11|66172|mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)
mm9_v1_chr15_-_82074765_82074852	0.507422	HNF4A_NR2F1,2.p2	NM_001080158|Cenpm|66570|centromere protein M
mm9_v1_chr10_-_80363493_80363567	0.507372	HNF4A_NR2F1,2.p2	AK009041|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK013230|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK003054|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK009152|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	AK088984|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	BC011436|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chrX_+_137909951_137910122	0.506516	HNF4A_NR2F1,2.p2	AK133179|Col4a5|12830|collagen, type IV, alpha 5	NM_001163155|Col4a5|12830|collagen, type IV, alpha 5	NM_007736|Col4a5|12830|collagen, type IV, alpha 5	AB041350|Col4a5|12830|collagen, type IV, alpha 5	BC082788|Col4a5|12830|collagen, type IV, alpha 5
mm9_v1_chr17_+_46298019_46298034	0.505955	HNF4A_NR2F1,2.p2	BC049089|Gtpbp2|56055|GTP binding protein 2	BC051958|Gtpbp2|56055|GTP binding protein 2	AK146415|Gtpbp2|56055|GTP binding protein 2
mm9_v1_chr6_-_83106268_83106377	0.505849	HNF4A_NR2F1,2.p2	AK006536|Wdr54|75659|WD repeat domain 54	BC083332|Wdr54|75659|WD repeat domain 54	AF053628|Wdr54|75659|WD repeat domain 54	AK154345|Wdr54|75659|WD repeat domain 54	NM_023790|Wdr54|75659|WD repeat domain 54
mm9_v1_chr13_-_101603253_101603421	0.504838	HNF4A_NR2F1,2.p2	AF461761|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	BC033452|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK090176|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK088004|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	AK051183|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5	NM_022885|Slc30a5|69048|solute carrier family 30 (zinc transporter), member 5
mm9_v1_chr2_+_157854457_157854551	0.504056	HNF4A_NR2F1,2.p2	BC028819|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	BC042447|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	BC054350|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	NM_027434|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B	AK139995|Rprd1b|70470|regulation of nuclear pre-mRNA domain containing 1B
mm9_v1_chr3_+_121948693_121948990	0.502891	HNF4A_NR2F1,2.p2	U95053|Gclm|14630|glutamate-cysteine ligase, modifier subunit	CT010256|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK176933|Gclm|14630|glutamate-cysteine ligase, modifier subunit	AK184377|Gclm|14630|glutamate-cysteine ligase, modifier subunit
mm9_v1_chr19_-_16855260_16855431	0.502517	HNF4A_NR2F1,2.p2	AB281691|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AB281690|Vps13a|271564|vacuolar protein sorting 13A (yeast)	BC145012|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK052697|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AB281689|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK041811|Vps13a|271564|vacuolar protein sorting 13A (yeast)	BC027255|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AB115421|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK140793|Vps13a|271564|vacuolar protein sorting 13A (yeast)	NM_173028|Vps13a|271564|vacuolar protein sorting 13A (yeast)	AK165475|Vps13a|271564|vacuolar protein sorting 13A (yeast)
mm9_v1_chr1_-_186635045_186635085	0.500197	HNF4A_NR2F1,2.p2	AK011722|Mosc1|66112|MOCO sulphurase C-terminal domain containing 1	AK004989|Mosc1|66112|MOCO sulphurase C-terminal domain containing 1
mm9_v1_chr17_+_33896924_33896956	0.499921	HNF4A_NR2F1,2.p2	
mm9_v1_chr8_+_109206967_109207060	0.499755	HNF4A_NR2F1,2.p2	AK085030|Tmco7|272538|transmembrane and coiled-coil domains 7	NM_173037|Tmco7|272538|transmembrane and coiled-coil domains 7	AK077757|Tmco7|272538|transmembrane and coiled-coil domains 7	AK054283|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066134|Tmco7|272538|transmembrane and coiled-coil domains 7	BC066869|Tmco7|272538|transmembrane and coiled-coil domains 7	BC069838|Tmco7|272538|transmembrane and coiled-coil domains 7	AK076373|Tmco7|272538|transmembrane and coiled-coil domains 7	AK173250|Tmco7|272538|transmembrane and coiled-coil domains 7
mm9_v1_chr4_+_14791353_14791554	0.499653	HNF4A_NR2F1,2.p2	AK049213|Tmem55a|72519|transmembrane protein 55A	NM_028264|Tmem55a|72519|transmembrane protein 55A	AK033845|Tmem55a|72519|transmembrane protein 55A	AK012054|Tmem55a|72519|transmembrane protein 55A	AX775959|Tmem55a|72519|transmembrane protein 55A	BC021435|Tmem55a|72519|transmembrane protein 55A	AK206695|Tmem55a|72519|transmembrane protein 55A
mm9_v1_chr13_+_23844213_23844248	0.499477	HNF4A_NR2F1,2.p2	NM_178203|Hist1h3b|319150|histone cluster 1, H3b
mm9_v1_chr17_+_46298055_46298112	0.49857	HNF4A_NR2F1,2.p2	AK148020|Gtpbp2|56055|GTP binding protein 2	AK087511|Gtpbp2|56055|GTP binding protein 2	AF168991|Gtpbp2|56055|GTP binding protein 2	AK008731|Gtpbp2|56055|GTP binding protein 2
mm9_v1_chr1_+_74438182_74438368	0.497898	HNF4A_NR2F1,2.p2	NM_153088|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	AK089478|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC049184|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC058085|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr2_+_59450080_59450110	0.497387	HNF4A_NR2F1,2.p2	NM_198294|Tanc1|66860|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm9_v1_chr17_-_35972795_35972854	0.497243	HNF4A_NR2F1,2.p2	AK188125|Tubb5|22154|tubulin, beta 5
mm9_v1_chr10_+_7445867_7445883	0.496876	HNF4A_NR2F1,2.p2	BC009136|Katna1|23924|katanin p60 (ATPase-containing) subunit A1
mm9_v1_chr11_+_102622885_102622911	0.496432	HNF4A_NR2F1,2.p2	BC054536|Adam11|11488|a disintegrin and metallopeptidase domain 11
mm9_v1_chr7_+_87331726_87331785	0.49519	HNF4A_NR2F1,2.p2	AK145570|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	NM_013659|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK028896|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	AK173249|Sema4b|20352|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm9_v1_chr14_+_122277821_122277919	0.492877	HNF4A_NR2F1,2.p2	NM_026861|Ubac2|68889|ubiquitin associated domain containing 2	BC024467|Ubac2|68889|ubiquitin associated domain containing 2	AK049109|Ubac2|68889|ubiquitin associated domain containing 2	AK158177|Ubac2|68889|ubiquitin associated domain containing 2
mm9_v1_chr9_+_72655019_72655080	0.49117	HNF4A_NR2F1,2.p2	AY630257|Prtg|235472|protogenin homolog (Gallus gallus)	DQ360114|Prtg|235472|protogenin homolog (Gallus gallus)	NM_175485|Prtg|235472|protogenin homolog (Gallus gallus)
mm9_v1_chr9_+_106356125_106356294	0.490213	HNF4A_NR2F1,2.p2	NM_021567|Pcbp4|59092|poly(rC) binding protein 4	AK004580|Pcbp4|59092|poly(rC) binding protein 4	AK005383|Pcbp4|59092|poly(rC) binding protein 4	AK077632|Pcbp4|59092|poly(rC) binding protein 4	AK082005|Pcbp4|59092|poly(rC) binding protein 4	BC010694|Pcbp4|59092|poly(rC) binding protein 4	AF176328|Pcbp4|59092|poly(rC) binding protein 4
mm9_v1_chr19_+_60965651_60965651	0.489861	HNF4A_NR2F1,2.p2	AK135076|Grk5|14773|G protein-coupled receptor kinase 5	NM_018869|Grk5|14773|G protein-coupled receptor kinase 5
mm9_v1_chr8_-_73919683_73919738	0.489527	HNF4A_NR2F1,2.p2	BC026453|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK043798|Ushbp1|234395|Usher syndrome 1C binding protein 1	NM_181418|Ushbp1|234395|Usher syndrome 1C binding protein 1	AK034939|Ushbp1|234395|Usher syndrome 1C binding protein 1
mm9_v1_chr10_-_82085802_82085872	0.489057	HNF4A_NR2F1,2.p2	BC038652|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	BC065417|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	AK004515|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene	AK045413|1190007I07Rik|544717|RIKEN cDNA 1190007I07 gene
mm9_v1_chrX_-_147241307_147241451	0.488864	HNF4A_NR2F1,2.p2	AK179193|Maged2|80884|melanoma antigen, family D, 2
mm9_v1_chr11_+_72264668_72264732	0.488807	HNF4A_NR2F1,2.p2	AK196252|Mybbp1a|18432|MYB binding protein (P160) 1a	AK190076|Mybbp1a|18432|MYB binding protein (P160) 1a	AK194300|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr5_+_89194155_89194268	0.488344	HNF4A_NR2F1,2.p2	AK048347|Dck|13178|deoxycytidine kinase	AK088195|Dck|13178|deoxycytidine kinase	AK151851|Dck|13178|deoxycytidine kinase	AK004592|Dck|13178|deoxycytidine kinase	AK010700|Dck|13178|deoxycytidine kinase	X77731|Dck|13178|deoxycytidine kinase
mm9_v1_chr8_+_71404452_71404464	0.486334	HNF4A_NR2F1,2.p2	AK080872|Lpl|16956|lipoprotein lipase	AK150328|Lpl|16956|lipoprotein lipase	AK150488|Lpl|16956|lipoprotein lipase	AK150505|Lpl|16956|lipoprotein lipase	AK150532|Lpl|16956|lipoprotein lipase	AK150577|Lpl|16956|lipoprotein lipase	AK150585|Lpl|16956|lipoprotein lipase	AK150593|Lpl|16956|lipoprotein lipase	AK150691|Lpl|16956|lipoprotein lipase	AK150984|Lpl|16956|lipoprotein lipase	AK150990|Lpl|16956|lipoprotein lipase	AK151006|Lpl|16956|lipoprotein lipase	AK151049|Lpl|16956|lipoprotein lipase	AK151093|Lpl|16956|lipoprotein lipase	AK151099|Lpl|16956|lipoprotein lipase	AK151105|Lpl|16956|lipoprotein lipase	AK151112|Lpl|16956|lipoprotein lipase	AK151216|Lpl|16956|lipoprotein lipase	AK151563|Lpl|16956|lipoprotein lipase	AK151679|Lpl|16956|lipoprotein lipase	AK151698|Lpl|16956|lipoprotein lipase	AK151727|Lpl|16956|lipoprotein lipase	AK151772|Lpl|16956|lipoprotein lipase	AK151866|Lpl|16956|lipoprotein lipase	AK151870|Lpl|16956|lipoprotein lipase	AK151872|Lpl|16956|lipoprotein lipase	AK152014|Lpl|16956|lipoprotein lipase	AK152035|Lpl|16956|lipoprotein lipase	AK152049|Lpl|16956|lipoprotein lipase	AK152079|Lpl|16956|lipoprotein lipase	AK152238|Lpl|16956|lipoprotein lipase	AK152350|Lpl|16956|lipoprotein lipase	AK152657|Lpl|16956|lipoprotein lipase	AK152706|Lpl|16956|lipoprotein lipase	AK152775|Lpl|16956|lipoprotein lipase	AK152869|Lpl|16956|lipoprotein lipase	AK152956|Lpl|16956|lipoprotein lipase	AK153006|Lpl|16956|lipoprotein lipase	AK153148|Lpl|16956|lipoprotein lipase	AK153242|Lpl|16956|lipoprotein lipase	AK153425|Lpl|16956|lipoprotein lipase	AK153428|Lpl|16956|lipoprotein lipase	AK155917|Lpl|16956|lipoprotein lipase	AK159268|Lpl|16956|lipoprotein lipase	NM_008509|Lpl|16956|lipoprotein lipase	AK150355|Lpl|16956|lipoprotein lipase	AK152481|Lpl|16956|lipoprotein lipase	AK170486|Lpl|16956|lipoprotein lipase	AK017272|Lpl|16956|lipoprotein lipase	AK150375|Lpl|16956|lipoprotein lipase	AK150646|Lpl|16956|lipoprotein lipase	AK152251|Lpl|16956|lipoprotein lipase	AK154419|Lpl|16956|lipoprotein lipase	BC003305|Lpl|16956|lipoprotein lipase
mm9_v1_chr7_-_20300595_20300626	0.485581	HNF4A_NR2F1,2.p2	AF043249|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AF316403|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)	AF316404|Tomm40|53333|translocase of outer mitochondrial membrane 40 homolog (yeast)
mm9_v1_chr1_-_57463517_57463543	0.485037	HNF4A_NR2F1,2.p2	BC023868|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	NM_001037742|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	NM_001114102|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene
mm9_v1_chr1_-_24107142_24107222	0.484642	HNF4A_NR2F1,2.p2	AK149303|Fam135a|68187|family with sequence similarity 135, member A	AK165306|Fam135a|68187|family with sequence similarity 135, member A	NM_026604|Fam135a|68187|family with sequence similarity 135, member A
mm9_v1_chr6_+_113442698_113442948	0.483605	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_+_108462759_108462899	0.482777	HNF4A_NR2F1,2.p2	AK169129|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK169788|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK146362|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK151706|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK166667|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	M33934|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK002676|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK011777|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK143505|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK150713|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK151233|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK152691|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK160569|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	AK159822|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	BC052671|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	BC010314|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	NM_011830|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2	M98333|Impdh2|23918|inosine 5'-phosphate dehydrogenase 2
mm9_v1_chr7_-_52560744_52560788	0.479684	HNF4A_NR2F1,2.p2	AK003969|Trpm4|68667|transient receptor potential cation channel, subfamily M, member 4
mm9_v1_chr19_+_4231936_4231998	0.47933	HNF4A_NR2F1,2.p2	AK010477|Pold4|69745|polymerase (DNA-directed), delta 4	BC028520|Pold4|69745|polymerase (DNA-directed), delta 4	AF515709|Pold4|69745|polymerase (DNA-directed), delta 4
mm9_v1_chr2_-_127347102_127347108	0.478996	HNF4A_NR2F1,2.p2	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr6_-_52590192_52590282	0.477222	HNF4A_NR2F1,2.p2	AK078175|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase
mm9_v1_chr9_-_44543245_44543320	0.477041	HNF4A_NR2F1,2.p2	BC058712|Phldb1|102693|pleckstrin homology-like domain, family B, member 1	NM_153537|Phldb1|102693|pleckstrin homology-like domain, family B, member 1
mm9_v1_chr2_-_164182009_164182029	0.475079	HNF4A_NR2F1,2.p2	U94341|Slpi|20568|secretory leukocyte peptidase inhibitor	U88093|Slpi|20568|secretory leukocyte peptidase inhibitor	AK010170|Slpi|20568|secretory leukocyte peptidase inhibitor
mm9_v1_chr14_+_122580904_122580944	0.474393	HNF4A_NR2F1,2.p2	NM_029556|Clybl|69634|citrate lyase beta like	BC023398|Clybl|69634|citrate lyase beta like	AK009345|Clybl|69634|citrate lyase beta like	AF428254|Clybl|69634|citrate lyase beta like
mm9_v1_chr10_-_126648509_126648683	0.474324	HNF4A_NR2F1,2.p2	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr8_+_91045333_91045405	0.474036	HNF4A_NR2F1,2.p2	AF358134|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AF343352|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr7_+_3290516_3290583	0.473281	HNF4A_NR2F1,2.p2	AJ001616|Myadm|50918|myeloid-associated differentiation marker	NM_016969|Myadm|50918|myeloid-associated differentiation marker	NM_001093765|Myadm|50918|myeloid-associated differentiation marker	AK089538|Myadm|50918|myeloid-associated differentiation marker	AK149962|Myadm|50918|myeloid-associated differentiation marker	AK159160|Myadm|50918|myeloid-associated differentiation marker
mm9_v1_chr1_+_166081951_166082088	0.472644	HNF4A_NR2F1,2.p2	AK137521|F5|14067|coagulation factor V	AK139240|F5|14067|coagulation factor V	AK137537|F5|14067|coagulation factor V	NM_007976|F5|14067|coagulation factor V	U52925|F5|14067|coagulation factor V
mm9_v1_chr11_-_50051989_50052021	0.472145	HNF4A_NR2F1,2.p2	BC038518|Ltc4s|17001|leukotriene C4 synthase
mm9_v1_chr2_-_30823346_30823454	0.472143	HNF4A_NR2F1,2.p2	AK082936|Tor1a|30931|torsin family 1, member A (torsin A)	AK079728|Tor1a|30931|torsin family 1, member A (torsin A)	AJ298841|Tor1a|30931|torsin family 1, member A (torsin A)	AK038891|Tor1a|30931|torsin family 1, member A (torsin A)	AK160361|Tor1a|30931|torsin family 1, member A (torsin A)	BC017683|Tor1a|30931|torsin family 1, member A (torsin A)	NM_144884|Tor1a|30931|torsin family 1, member A (torsin A)
mm9_v1_chr11_-_80191504_80191518	0.471622	HNF4A_NR2F1,2.p2	BC044897|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK153246|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK078548|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	NM_027472|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr10_-_116387419_116387512	0.469565	HNF4A_NR2F1,2.p2	BC080289|Rab3ip|216363|RAB3A interacting protein	NM_001003950|Rab3ip|216363|RAB3A interacting protein	AK152122|Rab3ip|216363|RAB3A interacting protein
mm9_v1_chr2_+_90858663_90858815	0.468034	HNF4A_NR2F1,2.p2	AK080832|Celf1|13046|CUGBP, Elav-like family member 1	AK160135|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr2_+_130953108_130953187	0.467365	HNF4A_NR2F1,2.p2	BC011103|Hspa12b|72630|heat shock protein 12B	NM_028306|Hspa12b|72630|heat shock protein 12B	AK012548|Hspa12b|72630|heat shock protein 12B
mm9_v1_chr2_-_158054870_158054968	0.467281	HNF4A_NR2F1,2.p2	BC137959|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	BC137960|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	AK052605|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	NM_001131021|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	NM_177657|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene	AK168367|D630003M21Rik|228846|RIKEN cDNA D630003M21 gene
mm9_v1_chr15_-_89011113_89011248	0.46714	HNF4A_NR2F1,2.p2	BC031202|Plxnb2|140570|plexin B2	AK154627|Plxnb2|140570|plexin B2	BC157960|Plxnb2|140570|plexin B2	BC157961|Plxnb2|140570|plexin B2	AK147538|Plxnb2|140570|plexin B2	NM_138749|Plxnb2|140570|plexin B2
mm9_v1_chr1_+_74708306_74708411	0.465293	HNF4A_NR2F1,2.p2	BC085151|Ttll4|67534|tubulin tyrosine ligase-like family, member 4	NM_001014974|Ttll4|67534|tubulin tyrosine ligase-like family, member 4
mm9_v1_chr11_+_62366262_62366409	0.464954	HNF4A_NR2F1,2.p2	M81745|Ubb|22187|ubiquitin B
mm9_v1_chr2_-_154233754_154233847	0.464428	HNF4A_NR2F1,2.p2	BC018546|Snta1|20648|syntrophin, acidic 1	U00677|Snta1|20648|syntrophin, acidic 1	AK137379|Snta1|20648|syntrophin, acidic 1	NM_009228|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr7_-_130513339_130513430	0.464104	HNF4A_NR2F1,2.p2	AK036468|Arhgap17|70497|Rho GTPase activating protein 17	AK036617|Arhgap17|70497|Rho GTPase activating protein 17	AK152266|Arhgap17|70497|Rho GTPase activating protein 17	AK152301|Arhgap17|70497|Rho GTPase activating protein 17	AK149986|Arhgap17|70497|Rho GTPase activating protein 17	AK147010|Arhgap17|70497|Rho GTPase activating protein 17	AK046411|Arhgap17|70497|Rho GTPase activating protein 17	AK161636|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122640|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122641|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122642|Arhgap17|70497|Rho GTPase activating protein 17	NM_001122643|Arhgap17|70497|Rho GTPase activating protein 17	NM_144529|Arhgap17|70497|Rho GTPase activating protein 17
mm9_v1_chr5_+_150242274_150242293	0.462348	HNF4A_NR2F1,2.p2	AK087319|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene	BC120819|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene	BC144997|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene	BC144998|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene	BC144999|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene	NM_029464|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene	AK161244|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene	AK016369|4930588N13Rik|75860|RIKEN cDNA 4930588N13 gene
mm9_v1_chr2_-_90758185_90758286	0.462287	HNF4A_NR2F1,2.p2	BC026750|Ptpmt1|66461|protein tyrosine phosphatase, mitochondrial 1	AK012674|Ptpmt1|66461|protein tyrosine phosphatase, mitochondrial 1	AK014691|Ptpmt1|66461|protein tyrosine phosphatase, mitochondrial 1	AK151972|Ptpmt1|66461|protein tyrosine phosphatase, mitochondrial 1	NM_025576|Ptpmt1|66461|protein tyrosine phosphatase, mitochondrial 1
mm9_v1_chr5_-_130731280_130731426	0.461569	HNF4A_NR2F1,2.p2	AK005079|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK019228|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK168847|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	BC003849|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	NM_023248|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	AK014648|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)	X99668|Sbds|66711|Shwachman-Bodian-Diamond syndrome homolog (human)
mm9_v1_chr14_-_56364390_56364415	0.461099	HNF4A_NR2F1,2.p2	AK003958|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1
mm9_v1_chr3_-_137794277_137794364	0.460941	HNF4A_NR2F1,2.p2	L47970|Mttp|17777|microsomal triglyceride transfer protein	BC012686|Mttp|17777|microsomal triglyceride transfer protein	AK146553|Mttp|17777|microsomal triglyceride transfer protein	NM_008642|Mttp|17777|microsomal triglyceride transfer protein
mm9_v1_chr2_-_164860303_164860336	0.460723	HNF4A_NR2F1,2.p2	AK173226|Ncoa5|228869|nuclear receptor coactivator 5
mm9_v1_chr5_-_122907269_122907331	0.45996	HNF4A_NR2F1,2.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr15_+_103129767_103129829	0.459679	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_-_102887744_102887832	0.459669	HNF4A_NR2F1,2.p2	AK140305|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm9_v1_chr19_+_6384413_6384432	0.458329	HNF4A_NR2F1,2.p2	AF124787|Pygm|19309|muscle glycogen phosphorylase	NM_011224|Pygm|19309|muscle glycogen phosphorylase	BC012961|Pygm|19309|muscle glycogen phosphorylase
mm9_v1_chr11_+_69867893_69867970	0.457368	HNF4A_NR2F1,2.p2	BC022106|Asgr1|11889|asialoglycoprotein receptor 1	U09362|Asgr1|11889|asialoglycoprotein receptor 1	BC014779|Asgr1|11889|asialoglycoprotein receptor 1
mm9_v1_chr5_+_65194814_65194820	0.4564	HNF4A_NR2F1,2.p2	AK010713|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chrX_+_156146532_156146595	0.456049	HNF4A_NR2F1,2.p2	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr2_-_103637096_103637239	0.456009	HNF4A_NR2F1,2.p2	AB373955|Caprin1|53872|cell cycle associated protein 1	AK141992|Caprin1|53872|cell cycle associated protein 1	AK166461|Caprin1|53872|cell cycle associated protein 1	U27838|Caprin1|53872|cell cycle associated protein 1	AK148203|Caprin1|53872|cell cycle associated protein 1	AK168676|Caprin1|53872|cell cycle associated protein 1	NM_001111289|Caprin1|53872|cell cycle associated protein 1	NM_001111290|Caprin1|53872|cell cycle associated protein 1	NM_001111292|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr2_-_154233715_154233739	0.455719	HNF4A_NR2F1,2.p2	AK037183|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr15_+_97622089_97622513	0.455313	HNF4A_NR2F1,2.p2	AK205354|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK197454|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK214110|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK177009|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK188489|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK186060|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK215813|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK190346|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK203730|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1	AK186268|Slc48a1|67739|solute carrier family 48 (heme transporter), member 1
mm9_v1_chr7_+_51751957_51752057	0.455073	HNF4A_NR2F1,2.p2	NM_028169|Fam71e1|75538|family with sequence similarity 71, member E1	AK018715|Fam71e1|75538|family with sequence similarity 71, member E1	BC130017|Fam71e1|75538|family with sequence similarity 71, member E1	AK006229|Fam71e1|75538|family with sequence similarity 71, member E1	BC100470|Fam71e1|75538|family with sequence similarity 71, member E1	BC049752|Fam71e1|75538|family with sequence similarity 71, member E1	AK006222|Fam71e1|75538|family with sequence similarity 71, member E1	AB473729|Fam71e1|75538|family with sequence similarity 71, member E1
mm9_v1_chr19_+_6276885_6276962	0.453832	HNF4A_NR2F1,2.p2	AK171047|Ehd1|13660|EH-domain containing 1	NM_010119|Ehd1|13660|EH-domain containing 1	AF173156|Ehd1|13660|EH-domain containing 1	AK167721|Ehd1|13660|EH-domain containing 1	AF099186|Ehd1|13660|EH-domain containing 1	AK154651|Ehd1|13660|EH-domain containing 1	AK160535|Ehd1|13660|EH-domain containing 1	AK166701|Ehd1|13660|EH-domain containing 1	AK159943|Ehd1|13660|EH-domain containing 1	AK077536|Ehd1|13660|EH-domain containing 1	AK012896|Ehd1|13660|EH-domain containing 1	AK159191|Ehd1|13660|EH-domain containing 1	AK168610|Ehd1|13660|EH-domain containing 1	AK172539|Ehd1|13660|EH-domain containing 1	BC043332|Ehd1|13660|EH-domain containing 1	BC037094|Ehd1|13660|EH-domain containing 1	BC054828|Ehd1|13660|EH-domain containing 1	AK152821|Ehd1|13660|EH-domain containing 1
mm9_v1_chr13_-_101322416_101322452	0.453304	HNF4A_NR2F1,2.p2	BC138679|Ocln|18260|occludin	BC138680|Ocln|18260|occludin	BC145371|Ocln|18260|occludin	AK042576|Ocln|18260|occludin	NM_008756|Ocln|18260|occludin
mm9_v1_chr15_-_102087673_102087947	0.452888	HNF4A_NR2F1,2.p2	M34476|Rarg|19411|retinoic acid receptor, gamma	X15848|Rarg|19411|retinoic acid receptor, gamma	M32068|Rarg|19411|retinoic acid receptor, gamma	BC012923|Rarg|19411|retinoic acid receptor, gamma	NM_011244|Rarg|19411|retinoic acid receptor, gamma	AK148064|Rarg|19411|retinoic acid receptor, gamma
mm9_v1_chr6_-_6167034_6167063	0.452316	HNF4A_NR2F1,2.p2	AK002829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK012670|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr7_-_106501642_106501748	0.452045	HNF4A_NR2F1,2.p2	AK077937|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	NM_001111043|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	NM_001111044|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	NM_009825|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1
mm9_v1_chr1_-_137063881_137064000	0.451254	HNF4A_NR2F1,2.p2	BC127619|Gpr37l1|171469|G protein-coupled receptor 37-like 1	BC127620|Gpr37l1|171469|G protein-coupled receptor 37-like 1	BC098482|Gpr37l1|171469|G protein-coupled receptor 37-like 1	AB016602|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr6_+_117867280_117867570	0.450877	HNF4A_NR2F1,2.p2	NM_001166427|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F	AK076478|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F	BC018185|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F	BC089313|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F	AK188037|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F	AK196656|Hnrnpf|98758|heterogeneous nuclear ribonucleoprotein F
mm9_v1_chr10_-_75403353_75403423	0.449339	HNF4A_NR2F1,2.p2	AK144847|Gm867|333670|predicted gene 867
mm9_v1_chr19_+_5637459_5637550	0.449331	HNF4A_NR2F1,2.p2	AK155321|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK158072|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	BC094053|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	NM_009045|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr15_+_76174727_76174807	0.449274	HNF4A_NR2F1,2.p2	AK182781|Cyc1|66445|cytochrome c-1	AK188690|Cyc1|66445|cytochrome c-1	AK184866|Cyc1|66445|cytochrome c-1	AK195664|Cyc1|66445|cytochrome c-1	AK215816|Cyc1|66445|cytochrome c-1
mm9_v1_chr7_-_87485030_87485120	0.445686	HNF4A_NR2F1,2.p2	AK047292|Unc45a|101869|unc-45 homolog A (C. elegans)	AK047476|Unc45a|101869|unc-45 homolog A (C. elegans)	AK088034|Unc45a|101869|unc-45 homolog A (C. elegans)	AK087777|Unc45a|101869|unc-45 homolog A (C. elegans)	AK166809|Unc45a|101869|unc-45 homolog A (C. elegans)	AK028912|Unc45a|101869|unc-45 homolog A (C. elegans)	BC004717|Unc45a|101869|unc-45 homolog A (C. elegans)	NM_133952|Unc45a|101869|unc-45 homolog A (C. elegans)
mm9_v1_chr1_+_17717497_17717562	0.445646	HNF4A_NR2F1,2.p2	AK133870|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK137611|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	NM_031402|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AF329198|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1	AK134273|Crispld1|83691|cysteine-rich secretory protein LCCL domain containing 1
mm9_v1_chr17_+_26012421_26012476	0.445022	HNF4A_NR2F1,2.p2	AK151352|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	NM_026686|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	AK170337|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	AK002535|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene	BC069266|0610011F06Rik|68347|RIKEN cDNA 0610011F06 gene
mm9_v1_chr15_-_82624668_82624681	0.444801	HNF4A_NR2F1,2.p2	AK004915|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26	NM_029562|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr10_+_127525538_127525558	0.444664	HNF4A_NR2F1,2.p2	AK193315|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK201737|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK212560|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK213511|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK216817|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK217965|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK217971|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK220031|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK220050|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr8_+_116657473_116657573	0.443815	HNF4A_NR2F1,2.p2	AK088191|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024437|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	NM_024446|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AF338424|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK004924|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC069843|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK011172|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	BC033046|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7	AK008824|Nudt7|67528|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm9_v1_chr17_+_25707771_25707860	0.443659	HNF4A_NR2F1,2.p2	AK079380|2810468N07Rik|72834|RIKEN cDNA 2810468N07 gene
mm9_v1_chr14_+_73542866_73542873	0.443598	HNF4A_NR2F1,2.p2	AK160881|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr7_+_107520787_107520818	0.443567	HNF4A_NR2F1,2.p2	AK165331|C2cd3|277939|C2 calcium-dependent domain containing 3	AK162155|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr7_+_133991066_133991211	0.442532	HNF4A_NR2F1,2.p2	BC055768|Doc2a|13446|double C2, alpha	NM_010069|Doc2a|13446|double C2, alpha
mm9_v1_chr4_-_82505534_82505564	0.439207	HNF4A_NR2F1,2.p2	NM_026647|Zdhhc21|68268|zinc finger, DHHC domain containing 21
mm9_v1_chr3_-_108218411_108218411	0.439187	HNF4A_NR2F1,2.p2	AB028499|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_001004177|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)	NM_017392|Celsr2|53883|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm9_v1_chr7_+_3568955_3568990	0.438715	HNF4A_NR2F1,2.p2	AK019099|Ndufa3|66091|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	NM_025348|Ndufa3|66091|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	BC120712|Ndufa3|66091|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	BC120714|Ndufa3|66091|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	AK006243|Ndufa3|66091|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	BC061002|Ndufa3|66091|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	AK003133|Ndufa3|66091|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3
mm9_v1_chr17_-_35972880_35972916	0.438031	HNF4A_NR2F1,2.p2	AK169398|Tubb5|22154|tubulin, beta 5
mm9_v1_chr2_-_134380065_134380100	0.437698	HNF4A_NR2F1,2.p2	BC018587|Hao1|15112|hydroxyacid oxidase 1, liver	AF104312|Hao1|15112|hydroxyacid oxidase 1, liver	BC119535|Hao1|15112|hydroxyacid oxidase 1, liver	BC119536|Hao1|15112|hydroxyacid oxidase 1, liver	NM_010403|Hao1|15112|hydroxyacid oxidase 1, liver	AK149565|Hao1|15112|hydroxyacid oxidase 1, liver
mm9_v1_chr3_+_113733457_113733508	0.437201	HNF4A_NR2F1,2.p2	AK140136|Col11a1|12814|collagen, type XI, alpha 1	NM_007729|Col11a1|12814|collagen, type XI, alpha 1	BC052161|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr16_-_17928207_17928265	0.436689	HNF4A_NR2F1,2.p2	AK005070|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	BC037087|Slc25a1|13358|solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
mm9_v1_chr1_+_74438139_74438172	0.436268	HNF4A_NR2F1,2.p2	AY028804|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr5_-_144076737_144077070	0.435025	HNF4A_NR2F1,2.p2	AK054218|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC082321|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC058940|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK050733|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	BC079853|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK041667|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK172614|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK086571|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK144964|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK053801|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	AK087531|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene	NM_172726|E130309D02Rik|231868|RIKEN cDNA E130309D02 gene
mm9_v1_chr11_+_119464299_119464363	0.430584	HNF4A_NR2F1,2.p2	AK087217|Rptor|74370|regulatory associated protein of MTOR, complex 1	NM_028898|Rptor|74370|regulatory associated protein of MTOR, complex 1	AK029341|Rptor|74370|regulatory associated protein of MTOR, complex 1	AK144082|Rptor|74370|regulatory associated protein of MTOR, complex 1	AK172276|Rptor|74370|regulatory associated protein of MTOR, complex 1
mm9_v1_chr11_-_11832366_11832461	0.430232	HNF4A_NR2F1,2.p2	BC033917|Grb10|14783|growth factor receptor bound protein 10	BC036389|Grb10|14783|growth factor receptor bound protein 10
mm9_v1_chr18_-_60872888_60873042	0.429727	HNF4A_NR2F1,2.p2	AF049894|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AF074926|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC066098|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	BC079561|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	NM_008306|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr11_+_101286385_101286400	0.429662	HNF4A_NR2F1,2.p2	AK086362|Rundc1|217201|RUN domain containing 1	BC119592|Rundc1|217201|RUN domain containing 1	BC119593|Rundc1|217201|RUN domain containing 1	NM_172566|Rundc1|217201|RUN domain containing 1
mm9_v1_chr1_-_173957316_173957398	0.429248	HNF4A_NR2F1,2.p2	AK033128|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AY035370|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK129311|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	BC052195|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	NM_033509|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr17_+_31701700_31701809	0.428306	HNF4A_NR2F1,2.p2	NM_016670|Pknox1|18771|Pbx/knotted 1 homeobox	AF061270|Pknox1|18771|Pbx/knotted 1 homeobox	AK134000|Pknox1|18771|Pbx/knotted 1 homeobox
mm9_v1_chr5_-_134790277_134790348	0.428255	HNF4A_NR2F1,2.p2	BC047387|Gtf2i|14886|general transcription factor II I
mm9_v1_chr10_-_128181069_128181164	0.427682	HNF4A_NR2F1,2.p2	BC006713|Dgka|13139|diacylglycerol kinase, alpha	NM_016811|Dgka|13139|diacylglycerol kinase, alpha
mm9_v1_chr4_-_58925575_58925638	0.427308	HNF4A_NR2F1,2.p2	AK087690|AI314180|230249|expressed sequence AI314180	BC058684|AI314180|230249|expressed sequence AI314180	NM_172381|AI314180|230249|expressed sequence AI314180	AK041579|AI314180|230249|expressed sequence AI314180
mm9_v1_chr4_-_116380924_116380989	0.426363	HNF4A_NR2F1,2.p2	AK007725|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	AK012761|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	BC054756|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	AK084194|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria	NM_025962|Mmachc|67096|methylmalonic aciduria cblC type, with homocystinuria
mm9_v1_chr12_+_3806474_3806522	0.426003	HNF4A_NR2F1,2.p2	AF503866|Dnmt3a|13435|DNA methyltransferase 3A	AK158722|Dnmt3a|13435|DNA methyltransferase 3A
mm9_v1_chr17_+_35187325_35187400	0.425783	HNF4A_NR2F1,2.p2	AK168262|Clic1|114584|chloride intracellular channel 1	AK088809|Clic1|114584|chloride intracellular channel 1
mm9_v1_chrX_+_70918446_70918580	0.425268	HNF4A_NR2F1,2.p2	NM_001142809|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	NM_001142810|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	NM_133987|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	AF459435|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	BC141067|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	BC145319|Slc6a8|102857|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm9_v1_chr2_-_104582953_104582979	0.425103	HNF4A_NR2F1,2.p2	BC013499|Depdc7|211896|DEP domain containing 7	NM_144804|Depdc7|211896|DEP domain containing 7	AK144066|Depdc7|211896|DEP domain containing 7	AK165504|Depdc7|211896|DEP domain containing 7	AK134830|Depdc7|211896|DEP domain containing 7	AK162086|Depdc7|211896|DEP domain containing 7	AK162218|Depdc7|211896|DEP domain containing 7
mm9_v1_chr7_+_111367306_111367377	0.424041	HNF4A_NR2F1,2.p2	AK040000|Trim6|94088|tripartite motif-containing 6	NM_001013616|Trim6|94088|tripartite motif-containing 6	AK021253|Trim6|94088|tripartite motif-containing 6	AK033396|Trim6|94088|tripartite motif-containing 6	AK049238|Trim6|94088|tripartite motif-containing 6	BC138965|Trim6|94088|tripartite motif-containing 6
mm9_v1_chr2_-_6466116_6466118	0.422987	HNF4A_NR2F1,2.p2	AK134815|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr19_+_29175864_29175994	0.422184	HNF4A_NR2F1,2.p2	AK009709|Rcl1|59028|RNA terminal phosphate cyclase-like 1	NM_021525|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK168153|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK012585|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK077751|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC053404|Rcl1|59028|RNA terminal phosphate cyclase-like 1	BC004574|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AK153377|Rcl1|59028|RNA terminal phosphate cyclase-like 1	AJ276895|Rcl1|59028|RNA terminal phosphate cyclase-like 1
mm9_v1_chr5_+_31500917_31501010	0.422085	HNF4A_NR2F1,2.p2	AK212070|Snx17|266781|sorting nexin 17	AK212764|Snx17|266781|sorting nexin 17	AK219074|Snx17|266781|sorting nexin 17	AK219703|Snx17|266781|sorting nexin 17
mm9_v1_chr6_+_117791285_117791301	0.421067	HNF4A_NR2F1,2.p2	AK146789|Zfp637|232337|zinc finger protein 637
mm9_v1_chr11_-_5607667_5607715	0.420944	HNF4A_NR2F1,2.p2	BC029262|Mrps24|64660|mitochondrial ribosomal protein S24	AK010590|Mrps24|64660|mitochondrial ribosomal protein S24	AK003117|Mrps24|64660|mitochondrial ribosomal protein S24	AK007338|Mrps24|64660|mitochondrial ribosomal protein S24	AK014099|Mrps24|64660|mitochondrial ribosomal protein S24	AK012461|Mrps24|64660|mitochondrial ribosomal protein S24	NM_026080|Mrps24|64660|mitochondrial ribosomal protein S24
mm9_v1_chr19_-_53113031_53113137	0.420176	HNF4A_NR2F1,2.p2	BC065174|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	NM_133216|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AK166715|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AK179372|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AK183686|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AK189536|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AK169024|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AK149676|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AF363970|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	AK146033|Xpnpep1|170750|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
mm9_v1_chrX_+_57252630_57252647	0.419874	HNF4A_NR2F1,2.p2	AK149372|F9|14071|coagulation factor IX	NM_007979|F9|14071|coagulation factor IX	BC125617|F9|14071|coagulation factor IX	BC132393|F9|14071|coagulation factor IX
mm9_v1_chr6_-_85819035_85819112	0.4192	HNF4A_NR2F1,2.p2	AK050449|Cml2|93673|camello-like 2	AF163315|Cml2|93673|camello-like 2
mm9_v1_chr13_+_37437194_37437308	0.419079	HNF4A_NR2F1,2.p2	AB007599|Ly86|17084|lymphocyte antigen 86	NM_010745|Ly86|17084|lymphocyte antigen 86	AK027929|Ly86|17084|lymphocyte antigen 86	BC096414|Ly86|17084|lymphocyte antigen 86	BC065783|Ly86|17084|lymphocyte antigen 86
mm9_v1_chr7_-_88851798_88851810	0.418821	HNF4A_NR2F1,2.p2	AK163423|Homer2|26557|homer homolog 2 (Drosophila)	NM_001164086|Homer2|26557|homer homolog 2 (Drosophila)	NM_011983|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr6_+_29644178_29644255	0.417217	HNF4A_NR2F1,2.p2	AF276890|Tspan33|232670|tetraspanin 33	AK172176|Tspan33|232670|tetraspanin 33	AK004954|Tspan33|232670|tetraspanin 33	BC024685|Tspan33|232670|tetraspanin 33	NM_146173|Tspan33|232670|tetraspanin 33
mm9_v1_chr6_-_4697009_4697210	0.416332	HNF4A_NR2F1,2.p2	AF103877|Sgce|20392|sarcoglycan, epsilon	AB200281|Sgce|20392|sarcoglycan, epsilon	AB200282|Sgce|20392|sarcoglycan, epsilon	AK076102|Sgce|20392|sarcoglycan, epsilon	AB117975|Sgce|20392|sarcoglycan, epsilon	AF031919|Sgce|20392|sarcoglycan, epsilon	AK132210|Sgce|20392|sarcoglycan, epsilon	BC012665|Sgce|20392|sarcoglycan, epsilon	NM_001130188|Sgce|20392|sarcoglycan, epsilon	NM_001130189|Sgce|20392|sarcoglycan, epsilon	NM_001130190|Sgce|20392|sarcoglycan, epsilon	NM_001130191|Sgce|20392|sarcoglycan, epsilon	NM_011360|Sgce|20392|sarcoglycan, epsilon
mm9_v1_chr1_+_174271338_174271373	0.415735	HNF4A_NR2F1,2.p2	AK048864|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10	NM_001039484|Kcnj10|16513|potassium inwardly-rectifying channel, subfamily J, member 10
mm9_v1_chr8_-_36558514_36558598	0.41447	HNF4A_NR2F1,2.p2	AK165026|Eri1|67276|exoribonuclease 1	BC046412|Eri1|67276|exoribonuclease 1	AK172005|Eri1|67276|exoribonuclease 1	AK144223|Eri1|67276|exoribonuclease 1	AK014041|Eri1|67276|exoribonuclease 1	AK014410|Eri1|67276|exoribonuclease 1	NM_026067|Eri1|67276|exoribonuclease 1
mm9_v1_chr7_-_53285651_53285671	0.414362	HNF4A_NR2F1,2.p2	AB028737|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	BC040400|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	EF109740|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	EF109741|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6	NM_018795|Abcc6|27421|ATP-binding cassette, sub-family C (CFTR/MRP), member 6
mm9_v1_chrX_+_93291377_93291457	0.412501	HNF4A_NR2F1,2.p2	AK133819|Msn|17698|moesin	AK145746|Msn|17698|moesin	AK150869|Msn|17698|moesin	AK153210|Msn|17698|moesin	NM_010833|Msn|17698|moesin	AK031171|Msn|17698|moesin	S47577|Msn|17698|moesin	BC047366|Msn|17698|moesin	AK157701|Msn|17698|moesin	AK087001|Msn|17698|moesin	AK088336|Msn|17698|moesin
mm9_v1_chr8_-_116372376_116372514	0.412254	HNF4A_NR2F1,2.p2	BC094674|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	AK140876|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm9_v1_chr8_+_97197870_97198051	0.412216	HNF4A_NR2F1,2.p2	AK185594|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK195499|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205549|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK207967|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK212239|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK214075|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK216087|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK218146|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK220110|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK206178|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK190102|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205025|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK005851|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr4_+_147415297_147415395	0.410972	HNF4A_NR2F1,2.p2	AK150159|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	NM_001161798|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AK149795|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	BC052466|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	AF404273|Mthfr|17769|5,10-methylenetetrahydrofolate reductase	BC051017|Mthfr|17769|5,10-methylenetetrahydrofolate reductase
mm9_v1_chr5_+_137463234_137463356	0.409918	HNF4A_NR2F1,2.p2	AK053320|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK013195|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK033360|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK157741|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm9_v1_chr10_+_69388242_69388279	0.409917	HNF4A_NR2F1,2.p2	L40631|Ank3|11735|ankyrin 3, epithelial	NM_009670|Ank3|11735|ankyrin 3, epithelial	NM_170687|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr11_+_115761444_115761621	0.409896	HNF4A_NR2F1,2.p2	NM_183259|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK020450|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	AK004370|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene	BC065414|2210020M01Rik|66528|RIKEN cDNA 2210020M01 gene
mm9_v1_chr7_-_99818257_99818406	0.409112	HNF4A_NR2F1,2.p2	BC150781|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	BC017150|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	AK017569|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	AK173035|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	BC048838|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)	BC037632|Pcf11|74737|cleavage and polyadenylation factor subunit homolog (S. cerevisiae)
mm9_v1_chr14_+_26661614_26661734	0.408815	HNF4A_NR2F1,2.p2	NM_013469|Anxa11|11744|annexin A11	U65986|Anxa11|11744|annexin A11	AK044203|Anxa11|11744|annexin A11	AK140375|Anxa11|11744|annexin A11	AK170850|Anxa11|11744|annexin A11	AK137158|Anxa11|11744|annexin A11	BC012875|Anxa11|11744|annexin A11
mm9_v1_chr14_+_73542894_73542982	0.408574	HNF4A_NR2F1,2.p2	AK147784|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr3_+_95087190_95087293	0.408473	HNF4A_NR2F1,2.p2	
mm9_v1_chr14_-_35315715_35315752	0.407205	HNF4A_NR2F1,2.p2	NM_009758|Bmpr1a|12166|bone morphogenetic protein receptor, type 1A	AK132051|Bmpr1a|12166|bone morphogenetic protein receptor, type 1A
mm9_v1_chr11_+_80242103_80242184	0.406984	HNF4A_NR2F1,2.p2	AK145731|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK166950|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	NM_178616|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK168289|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK051738|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK076002|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK140773|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK167559|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC119136|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC119138|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK007547|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC090980|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK089942|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	AK136049|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC100595|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC090664|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC037590|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	BC055457|Psmd11|69077|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm9_v1_chr16_+_18877129_18877328	0.40609	HNF4A_NR2F1,2.p2	BC052856|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	BC060181|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr10_+_79389816_79389883	0.405718	HNF4A_NR2F1,2.p2	AK154956|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	NM_007880|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)	BC050925|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)
mm9_v1_chr14_+_55634290_55634413	0.403048	HNF4A_NR2F1,2.p2	NM_026890|Ngdn|68966|neuroguidin, EIF4E binding protein	BC052790|Ngdn|68966|neuroguidin, EIF4E binding protein	EF437387|Ngdn|68966|neuroguidin, EIF4E binding protein	AK005098|Ngdn|68966|neuroguidin, EIF4E binding protein
mm9_v1_chr18_-_35091426_35091569	0.40186	HNF4A_NR2F1,2.p2	AK151028|Etf1|225363|eukaryotic translation termination factor 1	AK151710|Etf1|225363|eukaryotic translation termination factor 1	AK152428|Etf1|225363|eukaryotic translation termination factor 1	AK152952|Etf1|225363|eukaryotic translation termination factor 1	AK038771|Etf1|225363|eukaryotic translation termination factor 1
mm9_v1_chr12_-_102321911_102321936	0.401311	HNF4A_NR2F1,2.p2	AK053668|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	NM_001160214|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)	NM_211355|Smek1|68734|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
mm9_v1_chr15_+_86025174_86025178	0.401281	HNF4A_NR2F1,2.p2	
mm9_v1_chr3_-_40886908_40886954	0.400503	HNF4A_NR2F1,2.p2	BC044759|Pgrmc2|70804|progesterone receptor membrane component 2	AX775753|Pgrmc2|70804|progesterone receptor membrane component 2	AK140064|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr17_+_56301980_56301995	0.400119	HNF4A_NR2F1,2.p2	AK004949|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	BC032199|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1
mm9_v1_chr7_+_56214442_56214485	0.399983	HNF4A_NR2F1,2.p2	AK019901|Nav2|78286|neuron navigator 2	NM_001111016|Nav2|78286|neuron navigator 2	AK084063|Nav2|78286|neuron navigator 2	AK162444|Nav2|78286|neuron navigator 2
mm9_v1_chr19_-_47538898_47538933	0.399797	HNF4A_NR2F1,2.p2	AJ007012|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_001164717|Sh3pxd2a|14218|SH3 and PX domains 2A	NM_008018|Sh3pxd2a|14218|SH3 and PX domains 2A
mm9_v1_chr14_+_65569108_65569182	0.399548	HNF4A_NR2F1,2.p2	AK035769|Ints9|210925|integrator complex subunit 9	AK038979|Ints9|210925|integrator complex subunit 9	AK136992|Ints9|210925|integrator complex subunit 9	AK150195|Ints9|210925|integrator complex subunit 9	BC055700|Ints9|210925|integrator complex subunit 9
mm9_v1_chr7_+_31099832_31099870	0.399305	HNF4A_NR2F1,2.p2	NM_153577|AI428936|233066|expressed sequence AI428936	BC023803|AI428936|233066|expressed sequence AI428936
mm9_v1_chr6_-_33010151_33010266	0.398514	HNF4A_NR2F1,2.p2	AK003519|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	NM_025336|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	BC032987|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	AK145337|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	AK006643|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	BC021941|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	AK050063|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	AK002263|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3	AK002889|Chchd3|66075|coiled-coil-helix-coiled-coil-helix domain containing 3
mm9_v1_chr3_-_95695852_95695897	0.397571	HNF4A_NR2F1,2.p2	AF534879|BC028528|229600|cDNA sequence BC028528	NM_153513|BC028528|229600|cDNA sequence BC028528	BC028528|BC028528|229600|cDNA sequence BC028528
mm9_v1_chr11_+_3931731_3931881	0.397368	HNF4A_NR2F1,2.p2	BC026948|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	NM_146013|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)	AK028954|Sec14l4|103655|SEC14-like 4 (S. cerevisiae)
mm9_v1_chr15_-_36724292_36724292	0.397118	HNF4A_NR2F1,2.p2	NM_011740|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr19_+_9063730_9063822	0.396514	HNF4A_NR2F1,2.p2	AK009866|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	AK045184|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	NM_001039959|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	NM_009643|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	AK021404|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)	AK021407|Ahnak|66395|AHNAK nucleoprotein (desmoyokin)
mm9_v1_chr8_+_32239179_32239274	0.394761	HNF4A_NR2F1,2.p2	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chr9_-_42280256_42280323	0.393966	HNF4A_NR2F1,2.p2	BC139386|Tbcel|272589|tubulin folding cofactor E-like	BC139387|Tbcel|272589|tubulin folding cofactor E-like	AK077017|Tbcel|272589|tubulin folding cofactor E-like	NM_173038|Tbcel|272589|tubulin folding cofactor E-like	AK084854|Tbcel|272589|tubulin folding cofactor E-like
mm9_v1_chr15_+_3229159_3229218	0.392698	HNF4A_NR2F1,2.p2	AK183252|Sepp1|20363|selenoprotein P, plasma, 1	AK190256|Sepp1|20363|selenoprotein P, plasma, 1	AK199458|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr7_-_123182257_123182257	0.392429	HNF4A_NR2F1,2.p2	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr10_+_45009110_45009287	0.391962	HNF4A_NR2F1,2.p2	AK052325|Popdc3|78977|popeye domain containing 3	NM_024286|Popdc3|78977|popeye domain containing 3	AK039691|Popdc3|78977|popeye domain containing 3	BC114993|Popdc3|78977|popeye domain containing 3
mm9_v1_chr10_+_77044554_77044649	0.39188	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_129442079_129442192	0.391002	HNF4A_NR2F1,2.p2	AK195466|Sirpa|19261|signal-regulatory protein alpha
mm9_v1_chr5_+_31252402_31252480	0.390303	HNF4A_NR2F1,2.p2	AF189764|Abhd1|57742|abhydrolase domain containing 1	AK156413|Abhd1|57742|abhydrolase domain containing 1	AK162873|Abhd1|57742|abhydrolase domain containing 1	BC013505|Abhd1|57742|abhydrolase domain containing 1	NM_021304|Abhd1|57742|abhydrolase domain containing 1
mm9_v1_chr16_+_23429205_23429359	0.390183	HNF4A_NR2F1,2.p2	AK047543|Rtp1|239766|receptor transporter protein 1	NM_001004151|Rtp1|239766|receptor transporter protein 1	BC138910|Rtp1|239766|receptor transporter protein 1	BC138912|Rtp1|239766|receptor transporter protein 1	AY562225|Rtp1|239766|receptor transporter protein 1	EU070411|Rtp1|239766|receptor transporter protein 1
mm9_v1_chr16_+_32430986_32431114	0.390109	HNF4A_NR2F1,2.p2	AK044585|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	NM_009981|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	L28956|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	Z12302|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	AK076050|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform	NM_001163159|Pcyt1a|13026|phosphate cytidylyltransferase 1, choline, alpha isoform
mm9_v1_chr7_+_29225955_29226034	0.389759	HNF4A_NR2F1,2.p2	AK009967|Gmfg|63986|glia maturation factor, gamma	NM_001039192|Gmfg|63986|glia maturation factor, gamma	AB003588|Gmfg|63986|glia maturation factor, gamma
mm9_v1_chr10_+_127774872_127774973	0.389746	HNF4A_NR2F1,2.p2	BC013554|Cs|12974|citrate synthase	BC029754|Cs|12974|citrate synthase	NM_026444|Cs|12974|citrate synthase	AB056479|Cs|12974|citrate synthase
mm9_v1_chr2_+_157563136_157563225	0.389489	HNF4A_NR2F1,2.p2	NM_025680|Ctnnbl1|66642|catenin, beta like 1	BC050787|Ctnnbl1|66642|catenin, beta like 1	AY009405|Ctnnbl1|66642|catenin, beta like 1	AK145888|Ctnnbl1|66642|catenin, beta like 1	AK146274|Ctnnbl1|66642|catenin, beta like 1	AK145147|Ctnnbl1|66642|catenin, beta like 1	AK077616|Ctnnbl1|66642|catenin, beta like 1	AK145598|Ctnnbl1|66642|catenin, beta like 1	AK145719|Ctnnbl1|66642|catenin, beta like 1	AK044690|Ctnnbl1|66642|catenin, beta like 1	AK010547|Ctnnbl1|66642|catenin, beta like 1
mm9_v1_chr7_+_135667279_135667363	0.389099	HNF4A_NR2F1,2.p2	AK007414|Bag3|29810|BCL2-associated athanogene 3	AK036675|Bag3|29810|BCL2-associated athanogene 3	AK016510|Bag3|29810|BCL2-associated athanogene 3	AF130471|Bag3|29810|BCL2-associated athanogene 3
mm9_v1_chr9_-_15105965_15105999	0.38904	HNF4A_NR2F1,2.p2	BC016078|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene	NM_133732|4931406C07Rik|70984|RIKEN cDNA 4931406C07 gene
mm9_v1_chr13_-_60278859_60278952	0.388208	HNF4A_NR2F1,2.p2	NM_008086|Gas1|14451|growth arrest specific 1
mm9_v1_chr18_+_61085283_61085301	0.387971	HNF4A_NR2F1,2.p2	AK083245|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK163179|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	NM_177407|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	AK122410|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X14836|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr2_-_181316671_181316722	0.387095	HNF4A_NR2F1,2.p2	BC016535|Uckl1|68556|uridine-cytidine kinase 1-like 1	NM_026765|Uckl1|68556|uridine-cytidine kinase 1-like 1	AK144803|Uckl1|68556|uridine-cytidine kinase 1-like 1
mm9_v1_chr3_-_107499460_107499466	0.386391	HNF4A_NR2F1,2.p2	NM_145542|Ahcyl1|229709|S-adenosylhomocysteine hydrolase-like 1
mm9_v1_chr19_-_44471675_44471892	0.382917	HNF4A_NR2F1,2.p2	AK012370|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr14_+_79915429_79915530	0.38245	HNF4A_NR2F1,2.p2	AK132456|Elf1|13709|E74-like factor 1	U19617|Elf1|13709|E74-like factor 1	AK156098|Elf1|13709|E74-like factor 1	BC037743|Elf1|13709|E74-like factor 1	BC027532|Elf1|13709|E74-like factor 1	BC053914|Elf1|13709|E74-like factor 1
mm9_v1_chr7_-_26180629_26180730	0.38132	HNF4A_NR2F1,2.p2	BC053502|Lipe|16890|lipase, hormone sensitive
mm9_v1_chr7_-_140315100_140315165	0.381138	HNF4A_NR2F1,2.p2	NM_009980|Ctbp2|13017|C-terminal binding protein 2
mm9_v1_chr10_+_76038388_76038430	0.380257	HNF4A_NR2F1,2.p2	NM_080845|Ftcd|14317|formiminotransferase cyclodeaminase	AK165414|Ftcd|14317|formiminotransferase cyclodeaminase	BC024078|Ftcd|14317|formiminotransferase cyclodeaminase	BC010813|Ftcd|14317|formiminotransferase cyclodeaminase
mm9_v1_chr13_-_91881231_91881476	0.380078	HNF4A_NR2F1,2.p2	AK135005|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK162854|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK161222|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK162063|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK048302|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene
mm9_v1_chr18_-_70631999_70632129	0.379776	HNF4A_NR2F1,2.p2	AK160248|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene	AK160714|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene	AK087788|4930503L19Rik|269033|RIKEN cDNA 4930503L19 gene
mm9_v1_chr15_-_78034648_78034687	0.37955	HNF4A_NR2F1,2.p2	AK131986|Pvalb|19293|parvalbumin
mm9_v1_chr8_+_95351212_95351327	0.379284	HNF4A_NR2F1,2.p2	BC070430|Mmp2|17390|matrix metallopeptidase 2	NM_008610|Mmp2|17390|matrix metallopeptidase 2	AK148184|Mmp2|17390|matrix metallopeptidase 2
mm9_v1_chr6_+_133985717_133985901	0.379157	HNF4A_NR2F1,2.p2	AK155150|Etv6|14011|ets variant gene 6 (TEL oncogene)	NM_007961|Etv6|14011|ets variant gene 6 (TEL oncogene)	AK154569|Etv6|14011|ets variant gene 6 (TEL oncogene)
mm9_v1_chr17_+_29797537_29797684	0.378981	HNF4A_NR2F1,2.p2	AK080379|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	NM_028791|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK049190|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK154773|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK042060|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK043733|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK088624|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK150392|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK151194|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152276|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152799|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153021|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK153066|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	BC024691|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK005044|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK152452|Ftsjd2|74157|FtsJ methyltransferase domain containing 2	AK198101|Ftsjd2|74157|FtsJ methyltransferase domain containing 2
mm9_v1_chr10_-_126532862_126532974	0.378616	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_+_120339167_120339220	0.378405	HNF4A_NR2F1,2.p2	NM_019563|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AK012136|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AK154030|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC025116|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC080723|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	AF143369|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC132360|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	BC132362|Cited4|56222|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
mm9_v1_chr10_+_127759512_127759609	0.376696	HNF4A_NR2F1,2.p2	AF186115|Cnpy2|56530|canopy 2 homolog (zebrafish)	NM_019953|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK150953|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr8_+_54597026_54597158	0.376156	HNF4A_NR2F1,2.p2	NM_001005847|Aga|11593|aspartylglucosaminidase	BC132227|Aga|11593|aspartylglucosaminidase	BC132229|Aga|11593|aspartylglucosaminidase	BC145297|Aga|11593|aspartylglucosaminidase	S81393|Aga|11593|aspartylglucosaminidase	BC048230|Aga|11593|aspartylglucosaminidase
mm9_v1_chr5_-_104406333_104406376	0.374857	HNF4A_NR2F1,2.p2	AY101768|Hsd17b13|243168|hydroxysteroid (17-beta) dehydrogenase 13
mm9_v1_chr2_-_73749317_73749415	0.374753	HNF4A_NR2F1,2.p2	AK077930|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	NM_175015|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	AK087955|Atp5g3|228033|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
mm9_v1_chr3_-_117063090_117063169	0.37457	HNF4A_NR2F1,2.p2	AK079635|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr14_-_73768214_73768311	0.374538	HNF4A_NR2F1,2.p2	AK198503|Itm2b|16432|integral membrane protein 2B	AK197360|Itm2b|16432|integral membrane protein 2B	AB030204|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr9_+_50561092_50561116	0.374517	HNF4A_NR2F1,2.p2	AK146556|Cryab|12955|crystallin, alpha B
mm9_v1_chr8_-_122071463_122071711	0.37321	HNF4A_NR2F1,2.p2	AF094820|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1	DQ913734|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1	AK210818|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1	BC054837|Mbtps1|56453|membrane-bound transcription factor peptidase, site 1
mm9_v1_chr11_-_116007231_116007289	0.372746	HNF4A_NR2F1,2.p2	AK004058|Fbf1|217335|Fas (TNFRSF6) binding factor 1
mm9_v1_chr5_-_134652558_134652645	0.372266	HNF4A_NR2F1,2.p2	AK005040|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	BC024714|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	AF410456|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	BC055335|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	AK017733|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)	NM_033572|Wbscr16|94254|Williams-Beuren syndrome chromosome region 16 homolog (human)
mm9_v1_chr8_+_13060907_13061026	0.370961	HNF4A_NR2F1,2.p2	AK008819|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	NM_025834|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC024104|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC038045|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	AK005011|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein
mm9_v1_chr17_+_26813327_26813409	0.370513	HNF4A_NR2F1,2.p2	AK017760|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	NM_025272|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK159669|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK134836|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK007610|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK008464|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK168015|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	BC024733|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK013229|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E	AK030335|Atp6v0e|11974|ATPase, H+ transporting, lysosomal V0 subunit E
mm9_v1_chr14_-_71041964_71042074	0.370124	HNF4A_NR2F1,2.p2	AK082858|Fgf17|14171|fibroblast growth factor 17	BC119033|Fgf17|14171|fibroblast growth factor 17	BC144776|Fgf17|14171|fibroblast growth factor 17	AK077555|Fgf17|14171|fibroblast growth factor 17	NM_008004|Fgf17|14171|fibroblast growth factor 17
mm9_v1_chr3_-_95021614_95021863	0.370116	HNF4A_NR2F1,2.p2	BC150160|Gabpb2|213054|GA repeat binding protein, beta 2	BC150482|Gabpb2|213054|GA repeat binding protein, beta 2	AK007509|Gabpb2|213054|GA repeat binding protein, beta 2	AK163939|Gabpb2|213054|GA repeat binding protein, beta 2	AK030849|Gabpb2|213054|GA repeat binding protein, beta 2	AK036692|Gabpb2|213054|GA repeat binding protein, beta 2	AK087979|Gabpb2|213054|GA repeat binding protein, beta 2	AK086817|Gabpb2|213054|GA repeat binding protein, beta 2	AK141382|Gabpb2|213054|GA repeat binding protein, beta 2	NM_029885|Gabpb2|213054|GA repeat binding protein, beta 2	NM_172512|Gabpb2|213054|GA repeat binding protein, beta 2
mm9_v1_chr11_+_70376442_70376540	0.368832	HNF4A_NR2F1,2.p2	BC052474|Mink1|50932|misshapen-like kinase 1 (zebrafish)	BC079549|Mink1|50932|misshapen-like kinase 1 (zebrafish)
mm9_v1_chr2_+_22924846_22924986	0.367233	HNF4A_NR2F1,2.p2	AK005001|Acbd5|74159|acyl-Coenzyme A binding domain containing 5	BC061484|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr3_+_122432075_122432112	0.366782	HNF4A_NR2F1,2.p2	AF541937|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	NM_153422|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC119137|Pde5a|242202|phosphodiesterase 5A, cGMP-specific	BC120486|Pde5a|242202|phosphodiesterase 5A, cGMP-specific
mm9_v1_chr1_+_153275671_153275919	0.366201	HNF4A_NR2F1,2.p2	AK148524|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene	BC061491|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene	AK146088|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene	NM_026876|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene	BC110425|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene	AK088077|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene	BC064024|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene	BC132299|1190005F20Rik|98685|RIKEN cDNA 1190005F20 gene
mm9_v1_chr5_-_136849232_136849238	0.366052	HNF4A_NR2F1,2.p2	AF004225|Cux1|13047|cut-like homeobox 1
mm9_v1_chr2_+_145760519_145760551	0.365824	HNF4A_NR2F1,2.p2	AK019712|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	AK038772|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	NM_175280|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	AK086391|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC107030|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC107031|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC057361|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene	BC058733|4930529M08Rik|78774|RIKEN cDNA 4930529M08 gene
mm9_v1_chrX_-_106208659_106208718	0.365537	HNF4A_NR2F1,2.p2	BC021626|Hmgn5|50887|high-mobility group nucleosome binding domain 5	AB018374|Hmgn5|50887|high-mobility group nucleosome binding domain 5	BC083087|Hmgn5|50887|high-mobility group nucleosome binding domain 5	AK131996|Hmgn5|50887|high-mobility group nucleosome binding domain 5	AK146755|Hmgn5|50887|high-mobility group nucleosome binding domain 5	AF213454|Hmgn5|50887|high-mobility group nucleosome binding domain 5	NM_016710|Hmgn5|50887|high-mobility group nucleosome binding domain 5
mm9_v1_chr8_-_122346577_122346634	0.364249	HNF4A_NR2F1,2.p2	
mm9_v1_chr6_+_122258946_122259119	0.36393	HNF4A_NR2F1,2.p2	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr3_-_89083465_89083546	0.362633	HNF4A_NR2F1,2.p2	U90662|Efna1|13636|ephrin A1	U26188|Efna1|13636|ephrin A1	BC002046|Efna1|13636|ephrin A1
mm9_v1_chr1_-_173171150_173171196	0.361268	HNF4A_NR2F1,2.p2	AK188143|Ndufs2|226646|NADH dehydrogenase (ubiquinone) Fe-S protein 2
mm9_v1_chrX_+_34335642_34335646	0.360104	HNF4A_NR2F1,2.p2	U27316|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK003467|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	NM_007451|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr15_+_76175034_76175081	0.359283	HNF4A_NR2F1,2.p2	AK186904|Cyc1|66445|cytochrome c-1
mm9_v1_chr2_+_90780614_90780617	0.358776	HNF4A_NR2F1,2.p2	NM_017368|Celf1|13046|CUGBP, Elav-like family member 1	NM_198683|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr7_-_13583329_13583480	0.358632	HNF4A_NR2F1,2.p2	AF072760|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC115421|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC145823|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5	BC145825|Slc27a5|26459|solute carrier family 27 (fatty acid transporter), member 5
mm9_v1_chr6_-_92484838_92484854	0.358575	HNF4A_NR2F1,2.p2	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr2_+_122591075_122591156	0.358427	HNF4A_NR2F1,2.p2	AK075598|Sqrdl|59010|sulfide quinone reductase-like (yeast)	NM_001162503|Sqrdl|59010|sulfide quinone reductase-like (yeast)	AK149948|Sqrdl|59010|sulfide quinone reductase-like (yeast)	AK008290|Sqrdl|59010|sulfide quinone reductase-like (yeast)	BC028247|Sqrdl|59010|sulfide quinone reductase-like (yeast)	BC011153|Sqrdl|59010|sulfide quinone reductase-like (yeast)
mm9_v1_chr18_-_67884185_67884280	0.357967	HNF4A_NR2F1,2.p2	S52655|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK076072|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	M80739|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	M81477|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK132013|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	AK014528|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	BC008269|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	NM_001127177|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2	NM_008977|Ptpn2|19255|protein tyrosine phosphatase, non-receptor type 2
mm9_v1_chr3_-_103541868_103541874	0.357904	HNF4A_NR2F1,2.p2	BC005485|Olfml3|99543|olfactomedin-like 3
mm9_v1_chr15_+_100135219_100135286	0.356425	HNF4A_NR2F1,2.p2	AK008925|Mettl7a1|70152|methyltransferase like 7A1	AK076169|Mettl7a1|70152|methyltransferase like 7A1	NM_027334|Mettl7a1|70152|methyltransferase like 7A1	BC171988|Mettl7a1|70152|methyltransferase like 7A1	BC171989|Mettl7a1|70152|methyltransferase like 7A1	BC055034|Mettl7a1|70152|methyltransferase like 7A1	BC047149|Mettl7a1|70152|methyltransferase like 7A1	BC060144|Mettl7a1|70152|methyltransferase like 7A1	BC033446|Mettl7a1|70152|methyltransferase like 7A1	AJ536232|Mettl7a1|70152|methyltransferase like 7A1	AB253943|Mettl7a1|70152|methyltransferase like 7A1
mm9_v1_chr2_-_154233520_154233658	0.355905	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_-_21940154_21940189	0.355901	HNF4A_NR2F1,2.p2	AK010865|Acp5|11433|acid phosphatase 5, tartrate resistant	AK011915|Acp5|11433|acid phosphatase 5, tartrate resistant	NM_001102405|Acp5|11433|acid phosphatase 5, tartrate resistant
mm9_v1_chr9_-_103190558_103190644	0.355684	HNF4A_NR2F1,2.p2	BC021390|1300017J02Rik|71775|RIKEN cDNA 1300017J02 gene	AK005035|1300017J02Rik|71775|RIKEN cDNA 1300017J02 gene	AK076237|1300017J02Rik|71775|RIKEN cDNA 1300017J02 gene	NM_027918|1300017J02Rik|71775|RIKEN cDNA 1300017J02 gene
mm9_v1_chr8_-_88077181_88077304	0.354863	HNF4A_NR2F1,2.p2	AK212721|Dnaja2|56445|DnaJ (Hsp40) homolog, subfamily A, member 2
mm9_v1_chr7_-_20189709_20189838	0.352578	HNF4A_NR2F1,2.p2	AF042799|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK009334|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC010728|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC079543|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC103781|Clasrp|53609|CLK4-associating serine/arginine rich protein	AK159443|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC106129|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC060092|Clasrp|53609|CLK4-associating serine/arginine rich protein	BC051916|Clasrp|53609|CLK4-associating serine/arginine rich protein	NM_016680|Clasrp|53609|CLK4-associating serine/arginine rich protein
mm9_v1_chr8_+_11558428_11558472	0.352299	HNF4A_NR2F1,2.p2	AK035490|Ing1|26356|inhibitor of growth family, member 1	AK157424|Ing1|26356|inhibitor of growth family, member 1	AF177756|Ing1|26356|inhibitor of growth family, member 1
mm9_v1_chr14_-_67691221_67691310	0.352156	HNF4A_NR2F1,2.p2	BC080692|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161704|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167530|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK220192|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK161507|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	NM_028032|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK010380|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	BC065100|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK090027|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK164497|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform	AK167189|Ppp2r2a|71978|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform
mm9_v1_chr14_-_55196138_55196410	0.351867	HNF4A_NR2F1,2.p2	BC011035|Jub|16475|ajuba	NM_010590|Jub|16475|ajuba	U79776|Jub|16475|ajuba
mm9_v1_chr4_+_137024656_137024742	0.350865	HNF4A_NR2F1,2.p2	AK147294|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	AK147396|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)	NM_008305|Hspg2|15530|perlecan (heparan sulfate proteoglycan 2)
mm9_v1_chr11_-_6526020_6526080	0.35072	HNF4A_NR2F1,2.p2	BC016483|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK129245|Tbrg4|21379|transforming growth factor beta regulated gene 4	BC031155|Tbrg4|21379|transforming growth factor beta regulated gene 4	BC031910|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK028966|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK144813|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK166760|Tbrg4|21379|transforming growth factor beta regulated gene 4	AK168088|Tbrg4|21379|transforming growth factor beta regulated gene 4	NM_001130457|Tbrg4|21379|transforming growth factor beta regulated gene 4	NM_134011|Tbrg4|21379|transforming growth factor beta regulated gene 4
mm9_v1_chr18_+_50212935_50213173	0.350517	HNF4A_NR2F1,2.p2	NM_134131|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK087478|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK090350|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK090316|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK150965|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK149901|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK150445|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK151622|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK152426|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	BC009090|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8
mm9_v1_chr5_-_37221812_37221913	0.350494	HNF4A_NR2F1,2.p2	BC066211|Man2b2|17160|mannosidase 2, alpha B2	AK004900|Man2b2|17160|mannosidase 2, alpha B2	AK040388|Man2b2|17160|mannosidase 2, alpha B2	AK151873|Man2b2|17160|mannosidase 2, alpha B2	AK152349|Man2b2|17160|mannosidase 2, alpha B2	AB006458|Man2b2|17160|mannosidase 2, alpha B2	AK079969|Man2b2|17160|mannosidase 2, alpha B2	AK165376|Man2b2|17160|mannosidase 2, alpha B2	NM_008550|Man2b2|17160|mannosidase 2, alpha B2
mm9_v1_chr2_+_162760505_162760606	0.349489	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_+_3290587_3290611	0.349372	HNF4A_NR2F1,2.p2	AK052258|Myadm|50918|myeloid-associated differentiation marker	AK053414|Myadm|50918|myeloid-associated differentiation marker
mm9_v1_chr5_+_115729684_115729726	0.34934	HNF4A_NR2F1,2.p2	AK014348|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK045993|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK050334|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	BC052345|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK007496|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	NM_026504|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK009825|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)
mm9_v1_chr13_-_104710374_104710739	0.348724	HNF4A_NR2F1,2.p2	BC141178|Erbb2ip|59079|Erbb2 interacting protein	BC141188|Erbb2ip|59079|Erbb2 interacting protein	BC145498|Erbb2ip|59079|Erbb2 interacting protein	BC145509|Erbb2ip|59079|Erbb2 interacting protein	AK169529|Erbb2ip|59079|Erbb2 interacting protein	NM_001005868|Erbb2ip|59079|Erbb2 interacting protein	NM_021563|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chr16_+_38347076_38347170	0.347988	HNF4A_NR2F1,2.p2	BC048668|Cox17|12856|cytochrome c oxidase, subunit XVII assembly protein homolog (yeast)	NM_001017429|Cox17|12856|cytochrome c oxidase, subunit XVII assembly protein homolog (yeast)	AK158051|Cox17|12856|cytochrome c oxidase, subunit XVII assembly protein homolog (yeast)	AK148493|Cox17|12856|cytochrome c oxidase, subunit XVII assembly protein homolog (yeast)	AK152968|Cox17|12856|cytochrome c oxidase, subunit XVII assembly protein homolog (yeast)	AK160687|Cox17|12856|cytochrome c oxidase, subunit XVII assembly protein homolog (yeast)	AK146388|Cox17|12856|cytochrome c oxidase, subunit XVII assembly protein homolog (yeast)
mm9_v1_chr6_-_148894953_148895000	0.346993	HNF4A_NR2F1,2.p2	BC076599|Fam60a|56306|family with sequence similarity 60, member A	NM_019643|Fam60a|56306|family with sequence similarity 60, member A	AK166569|Fam60a|56306|family with sequence similarity 60, member A	AK145384|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr19_+_8667671_8667730	0.345583	HNF4A_NR2F1,2.p2	NM_001164635|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK157891|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	BC014762|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK044336|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AF078869|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8
mm9_v1_chr10_-_79783221_79783306	0.345241	HNF4A_NR2F1,2.p2	AK046452|2310011J03Rik|66374|RIKEN cDNA 2310011J03 gene	AK140230|2310011J03Rik|66374|RIKEN cDNA 2310011J03 gene	BC023429|2310011J03Rik|66374|RIKEN cDNA 2310011J03 gene	AK009305|2310011J03Rik|66374|RIKEN cDNA 2310011J03 gene	AK020401|2310011J03Rik|66374|RIKEN cDNA 2310011J03 gene	NM_025521|2310011J03Rik|66374|RIKEN cDNA 2310011J03 gene
mm9_v1_chr4_-_138686896_138687027	0.343149	HNF4A_NR2F1,2.p2	AK008362|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK008449|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK009189|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK011553|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK004466|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	BC055791|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK153063|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK167818|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK009528|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK152509|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK159100|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	AK030343|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene	NM_001163006|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene
mm9_v1_chr12_-_103056971_103057106	0.342722	HNF4A_NR2F1,2.p2	AK208765|Fbln5|23876|fibulin 5	AK178699|Fbln5|23876|fibulin 5	BC006636|Fbln5|23876|fibulin 5	AK159189|Fbln5|23876|fibulin 5
mm9_v1_chr18_+_61085303_61085326	0.342525	HNF4A_NR2F1,2.p2	BC031745|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr9_+_108382180_108382248	0.342133	HNF4A_NR2F1,2.p2	NM_008483|Lamb2|16779|laminin, beta 2	AK140351|Lamb2|16779|laminin, beta 2	AK158444|Lamb2|16779|laminin, beta 2
mm9_v1_chr7_-_52830518_52830542	0.34196	HNF4A_NR2F1,2.p2	AK002217|0610005C13Rik|71661|RIKEN cDNA 0610005C13 gene	AK085337|0610005C13Rik|71661|RIKEN cDNA 0610005C13 gene
mm9_v1_chr15_-_88808967_88808984	0.341815	HNF4A_NR2F1,2.p2	AK030396|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	AK043757|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	BC024719|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	NM_133241|Mlc1|170790|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm9_v1_chr14_-_52525156_52525167	0.34135	HNF4A_NR2F1,2.p2	AK004051|Ndrg2|29811|N-myc downstream regulated gene 2
mm9_v1_chr11_-_58752322_58752362	0.341179	HNF4A_NR2F1,2.p2	AK037991|Rnf187|108660|ring finger protein 187
mm9_v1_chr11_+_69794546_69794727	0.338631	HNF4A_NR2F1,2.p2	AK076150|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	BC018265|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	NM_026017|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	AK012063|Ctdnep1|67181|CTD nuclear envelope phosphatase 1	AK164602|Ctdnep1|67181|CTD nuclear envelope phosphatase 1
mm9_v1_chr11_-_103815291_103815312	0.337962	HNF4A_NR2F1,2.p2	BC019167|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr14_-_14793678_14793804	0.337632	HNF4A_NR2F1,2.p2	AK147003|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK007440|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK008899|Thoc7|66231|THO complex 7 homolog (Drosophila)	NM_001013578|Thoc7|66231|THO complex 7 homolog (Drosophila)	NM_025435|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK013319|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK005176|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC042209|Thoc7|66231|THO complex 7 homolog (Drosophila)	AK010958|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC027113|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC054419|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC116919|Thoc7|66231|THO complex 7 homolog (Drosophila)	BC116945|Thoc7|66231|THO complex 7 homolog (Drosophila)
mm9_v1_chr13_+_45602909_45602912	0.337595	HNF4A_NR2F1,2.p2	AK084508|Gmpr|66355|guanosine monophosphate reductase
mm9_v1_chr9_+_44850616_44850778	0.337527	HNF4A_NR2F1,2.p2	AF030454|Mpzl2|14012|myelin protein zero-like 2	AK032788|Mpzl2|14012|myelin protein zero-like 2	AK170816|Mpzl2|14012|myelin protein zero-like 2	AK167263|Mpzl2|14012|myelin protein zero-like 2	AK166341|Mpzl2|14012|myelin protein zero-like 2
mm9_v1_chr8_+_34763918_34764151	0.33694	HNF4A_NR2F1,2.p2	AK040136|Gsr|14782|glutathione reductase	X76341|Gsr|14782|glutathione reductase	AK159678|Gsr|14782|glutathione reductase	AK019177|Gsr|14782|glutathione reductase	AK159218|Gsr|14782|glutathione reductase	AK151063|Gsr|14782|glutathione reductase	AK151247|Gsr|14782|glutathione reductase	AK152873|Gsr|14782|glutathione reductase	AK084328|Gsr|14782|glutathione reductase	AK167393|Gsr|14782|glutathione reductase	AK151674|Gsr|14782|glutathione reductase
mm9_v1_chr3_+_89225539_89225564	0.33675	HNF4A_NR2F1,2.p2	NM_001113331|Shc1|20416|src homology 2 domain-containing transforming protein C1	AK155158|Shc1|20416|src homology 2 domain-containing transforming protein C1
mm9_v1_chr5_-_90692344_90692414	0.335369	HNF4A_NR2F1,2.p2	AK153560|Ankrd17|81702|ankyrin repeat domain 17
mm9_v1_chr6_+_29867012_29867023	0.33349	HNF4A_NR2F1,2.p2	AK041004|Fam40b|320609|family with sequence similarity 40, member B	AK042073|Fam40b|320609|family with sequence similarity 40, member B	AK052271|Fam40b|320609|family with sequence similarity 40, member B	AK163706|Fam40b|320609|family with sequence similarity 40, member B	NM_001037740|Fam40b|320609|family with sequence similarity 40, member B	NM_177204|Fam40b|320609|family with sequence similarity 40, member B	BC147502|Fam40b|320609|family with sequence similarity 40, member B	BC172034|Fam40b|320609|family with sequence similarity 40, member B
mm9_v1_chr10_+_88194153_88194296	0.333107	HNF4A_NR2F1,2.p2	AK018138|Arl1|104303|ADP-ribosylation factor-like 1	AK010732|Arl1|104303|ADP-ribosylation factor-like 1	NM_025859|Arl1|104303|ADP-ribosylation factor-like 1	AK167748|Arl1|104303|ADP-ribosylation factor-like 1	BC096684|Arl1|104303|ADP-ribosylation factor-like 1
mm9_v1_chr9_-_121767026_121767117	0.332434	HNF4A_NR2F1,2.p2	NM_019814|Higd1a|56295|HIG1 domain family, member 1A
mm9_v1_chr2_+_28048779_28048916	0.332406	HNF4A_NR2F1,2.p2	AF028740|Olfm1|56177|olfactomedin 1
mm9_v1_chr4_+_108520389_108520516	0.329634	HNF4A_NR2F1,2.p2	BC021493|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK003197|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	NM_029571|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK148185|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK150178|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)	AK156755|Kti12|100087|KTI12 homolog, chromatin associated (S. cerevisiae)
mm9_v1_chr18_+_77424738_77424806	0.328799	HNF4A_NR2F1,2.p2	X98014|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	AK078670|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	AK162549|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm9_v1_chr17_+_30272123_30272409	0.327901	HNF4A_NR2F1,2.p2	BC027161|Zfand3|21769|zinc finger, AN1-type domain 3	EF437371|Zfand3|21769|zinc finger, AN1-type domain 3	BC024483|Zfand3|21769|zinc finger, AN1-type domain 3
mm9_v1_chr1_-_127331883_127332158	0.327597	HNF4A_NR2F1,2.p2	AK147931|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK160047|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168568|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150487|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153204|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159668|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167891|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150991|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK167148|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	BC005557|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	NM_023735|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK168771|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK150589|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159135|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK152865|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153150|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK159775|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK004554|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK083343|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK145536|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK153079|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)
mm9_v1_chrX_-_160513980_160514094	0.325783	HNF4A_NR2F1,2.p2	NM_009173|Siah1b|20438|seven in absentia 1B	Z19580|Siah1b|20438|seven in absentia 1B	BC052887|Siah1b|20438|seven in absentia 1B
mm9_v1_chr2_+_72018059_72018093	0.325565	HNF4A_NR2F1,2.p2	AK004874|Rapgef4|56508|Rap guanine nucleotide exchange factor (GEF) 4
mm9_v1_chr15_+_98957224_98957275	0.325135	HNF4A_NR2F1,2.p2	AK171266|Spats2|72572|spermatogenesis associated, serine-rich 2	AK048720|Spats2|72572|spermatogenesis associated, serine-rich 2	AB079132|Spats2|72572|spermatogenesis associated, serine-rich 2	NM_139140|Spats2|72572|spermatogenesis associated, serine-rich 2
mm9_v1_chr11_+_102110161_102110288	0.324878	HNF4A_NR2F1,2.p2	NM_153544|BC030867|217216|cDNA sequence BC030867	AK029811|BC030867|217216|cDNA sequence BC030867	BC030867|BC030867|217216|cDNA sequence BC030867	BC108338|BC030867|217216|cDNA sequence BC030867	BC085317|BC030867|217216|cDNA sequence BC030867
mm9_v1_chr3_+_14578670_14578689	0.324835	HNF4A_NR2F1,2.p2	BC003220|E2f5|13559|E2F transcription factor 5	NM_007892|E2f5|13559|E2F transcription factor 5
mm9_v1_chr10_-_68815606_68815685	0.324369	HNF4A_NR2F1,2.p2	BC024396|Cdk1|12534|cyclin-dependent kinase 1	AK168054|Cdk1|12534|cyclin-dependent kinase 1	AK030231|Cdk1|12534|cyclin-dependent kinase 1	NM_007659|Cdk1|12534|cyclin-dependent kinase 1	AK135516|Cdk1|12534|cyclin-dependent kinase 1	U58633|Cdk1|12534|cyclin-dependent kinase 1	AK051859|Cdk1|12534|cyclin-dependent kinase 1
mm9_v1_chr7_+_149657767_149657783	0.324082	HNF4A_NR2F1,2.p2	AK031587|Lsp1|16985|lymphocyte specific 1
mm9_v1_chr5_-_130354822_130354958	0.323807	HNF4A_NR2F1,2.p2	J03293|Phkg1|18682|phosphorylase kinase gamma 1	BC055102|Phkg1|18682|phosphorylase kinase gamma 1	NM_011079|Phkg1|18682|phosphorylase kinase gamma 1	AK079361|Phkg1|18682|phosphorylase kinase gamma 1
mm9_v1_chr8_-_113824073_113824198	0.323033	HNF4A_NR2F1,2.p2	AK137698|Rfwd3|234736|ring finger and WD repeat domain 3	BC096602|Rfwd3|234736|ring finger and WD repeat domain 3	AK146451|Rfwd3|234736|ring finger and WD repeat domain 3	BC018533|Rfwd3|234736|ring finger and WD repeat domain 3	AK137499|Rfwd3|234736|ring finger and WD repeat domain 3	AK139032|Rfwd3|234736|ring finger and WD repeat domain 3	BC023694|Rfwd3|234736|ring finger and WD repeat domain 3	NM_146218|Rfwd3|234736|ring finger and WD repeat domain 3
mm9_v1_chr10_-_79723633_79723732	0.322006	HNF4A_NR2F1,2.p2	AF015887|Gamt|14431|guanidinoacetate methyltransferase	AK158087|Gamt|14431|guanidinoacetate methyltransferase	BC049233|Gamt|14431|guanidinoacetate methyltransferase	AK140688|Gamt|14431|guanidinoacetate methyltransferase	NM_010255|Gamt|14431|guanidinoacetate methyltransferase
mm9_v1_chr11_+_95685772_95685902	0.321953	HNF4A_NR2F1,2.p2	AJ457190|Phospho1|237928|phosphatase, orphan 1	NM_153104|Phospho1|237928|phosphatase, orphan 1
mm9_v1_chr14_+_56364519_56364549	0.320608	HNF4A_NR2F1,2.p2	NM_026403|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	AK154387|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	AK011570|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	AK050912|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	AK037831|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	AK032873|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	BC018523|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene
mm9_v1_chr1_+_74438416_74438473	0.319517	HNF4A_NR2F1,2.p2	AK167390|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC065158|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC079638|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr18_-_60908058_60908102	0.319369	HNF4A_NR2F1,2.p2	AK156504|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr14_+_66424675_66424787	0.319258	HNF4A_NR2F1,2.p2	AK076121|Pbk|52033|PDZ binding kinase	BC020099|Pbk|52033|PDZ binding kinase	AB041882|Pbk|52033|PDZ binding kinase	NM_023209|Pbk|52033|PDZ binding kinase	AK003838|Pbk|52033|PDZ binding kinase
mm9_v1_chr7_-_28835041_28835115	0.318398	HNF4A_NR2F1,2.p2	BC012708|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK167041|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	BC092265|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	L76223|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK150989|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK160718|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK167528|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK169224|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK077507|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK160644|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK169244|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK050677|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	AK153991|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4	NM_011874|Psmc4|23996|proteasome (prosome, macropain) 26S subunit, ATPase, 4
mm9_v1_chr11_-_69479553_69479654	0.31834	HNF4A_NR2F1,2.p2	NM_009853|Cd68|12514|CD68 antigen	AK170443|Cd68|12514|CD68 antigen	BC021637|Cd68|12514|CD68 antigen	AK002264|Cd68|12514|CD68 antigen	X68273|Cd68|12514|CD68 antigen
mm9_v1_chr5_-_45841351_45841377	0.31817	HNF4A_NR2F1,2.p2	AK161660|Qdpr|110391|quinoid dihydropteridine reductase
mm9_v1_chr16_-_91647153_91647201	0.31705	HNF4A_NR2F1,2.p2	AK146478|Gart|14450|phosphoribosylglycinamide formyltransferase	BC070465|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168876|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168445|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168864|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168458|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168501|Gart|14450|phosphoribosylglycinamide formyltransferase	U01023|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168724|Gart|14450|phosphoribosylglycinamide formyltransferase	AK168796|Gart|14450|phosphoribosylglycinamide formyltransferase	AK146355|Gart|14450|phosphoribosylglycinamide formyltransferase
mm9_v1_chr2_-_53050207_53050293	0.316506	HNF4A_NR2F1,2.p2	AF135439|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	NM_018785|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	AK045207|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	BC003318|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)	AK087963|Prpf40a|56194|PRP40 pre-mRNA processing factor 40 homolog A (yeast)
mm9_v1_chr10_-_79565387_79565472	0.315863	HNF4A_NR2F1,2.p2	BC019206|Sbno2|216161|strawberry notch homolog 2 (Drosophila)	AK043861|Sbno2|216161|strawberry notch homolog 2 (Drosophila)	AK155462|Sbno2|216161|strawberry notch homolog 2 (Drosophila)	AK155674|Sbno2|216161|strawberry notch homolog 2 (Drosophila)	BC056369|Sbno2|216161|strawberry notch homolog 2 (Drosophila)	NM_183426|Sbno2|216161|strawberry notch homolog 2 (Drosophila)
mm9_v1_chr2_+_90519527_90519582	0.315782	HNF4A_NR2F1,2.p2	AK171218|Nup160|59015|nucleoporin 160	AK155492|Nup160|59015|nucleoporin 160	BC052450|Nup160|59015|nucleoporin 160	BC054523|Nup160|59015|nucleoporin 160	AK160685|Nup160|59015|nucleoporin 160	AK164802|Nup160|59015|nucleoporin 160
mm9_v1_chr14_+_73542810_73542839	0.315017	HNF4A_NR2F1,2.p2	AK013540|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	AK030893|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr6_-_85819124_85819161	0.314602	HNF4A_NR2F1,2.p2	NM_053096|Cml2|93673|camello-like 2	BC039773|Cml2|93673|camello-like 2
mm9_v1_chr2_+_32612744_32612905	0.314018	HNF4A_NR2F1,2.p2	BC003466|Tor2a|30933|torsin family 2, member A	BC024469|Tor2a|30933|torsin family 2, member A	NM_152800|Tor2a|30933|torsin family 2, member A	AK170979|Tor2a|30933|torsin family 2, member A	AK171247|Tor2a|30933|torsin family 2, member A	AK162719|Tor2a|30933|torsin family 2, member A	AK019246|Tor2a|30933|torsin family 2, member A	AK185253|Tor2a|30933|torsin family 2, member A	AK189495|Tor2a|30933|torsin family 2, member A
mm9_v1_chr14_-_56377231_56377254	0.313892	HNF4A_NR2F1,2.p2	AF041377|Cideb|12684|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	BC046340|Cideb|12684|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
mm9_v1_chr4_-_147818818_147818893	0.313482	HNF4A_NR2F1,2.p2	BC071203|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK004550|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK078442|Ubiad1|71707|UbiA prenyltransferase domain containing 1	NM_027873|Ubiad1|71707|UbiA prenyltransferase domain containing 1	AK034787|Ubiad1|71707|UbiA prenyltransferase domain containing 1
mm9_v1_chr15_-_31297286_31297513	0.313414	HNF4A_NR2F1,2.p2	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr3_-_95659666_95659748	0.312643	HNF4A_NR2F1,2.p2	AK088194|Prpf3|70767|PRP3 pre-mRNA processing factor 3 homolog (yeast)	NM_027541|Prpf3|70767|PRP3 pre-mRNA processing factor 3 homolog (yeast)	BC006782|Prpf3|70767|PRP3 pre-mRNA processing factor 3 homolog (yeast)	AK014398|Prpf3|70767|PRP3 pre-mRNA processing factor 3 homolog (yeast)	AK139852|Prpf3|70767|PRP3 pre-mRNA processing factor 3 homolog (yeast)	AK167435|Prpf3|70767|PRP3 pre-mRNA processing factor 3 homolog (yeast)
mm9_v1_chr13_-_101322672_101322676	0.312248	HNF4A_NR2F1,2.p2	U49185|Ocln|18260|occludin
mm9_v1_chr7_-_133768983_133769012	0.312185	HNF4A_NR2F1,2.p2	AF131196|Nupr1|56312|nuclear protein 1	NM_019738|Nupr1|56312|nuclear protein 1	BC002109|Nupr1|56312|nuclear protein 1	AK009572|Nupr1|56312|nuclear protein 1
mm9_v1_chr11_-_16408126_16408197	0.311691	HNF4A_NR2F1,2.p2	AK160390|Sec61g|20335|SEC61, gamma subunit	AK012644|Sec61g|20335|SEC61, gamma subunit	BC019129|Sec61g|20335|SEC61, gamma subunit	BC019158|Sec61g|20335|SEC61, gamma subunit
mm9_v1_chrX_-_35988178_35988234	0.311068	HNF4A_NR2F1,2.p2	AB030184|C1galt1c1|59048|C1GALT1-specific chaperone 1	AY159320|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr7_+_71537652_71537662	0.309742	HNF4A_NR2F1,2.p2	BC038157|Mcee|73724|methylmalonyl CoA epimerase	NM_028626|Mcee|73724|methylmalonyl CoA epimerase	AK003511|Mcee|73724|methylmalonyl CoA epimerase
mm9_v1_chr8_+_87356149_87356307	0.308844	HNF4A_NR2F1,2.p2	AK002738|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK003314|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK019570|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK028227|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC061069|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	NM_183358|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	AK009723|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1	BC022592|Gadd45gip1|102060|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm9_v1_chr3_+_19857053_19857266	0.308497	HNF4A_NR2F1,2.p2	BC062957|Cp|12870|ceruloplasmin	NM_001042611|Cp|12870|ceruloplasmin	NM_007752|Cp|12870|ceruloplasmin	DQ336396|Cp|12870|ceruloplasmin	AK014835|Cp|12870|ceruloplasmin	AK043248|Cp|12870|ceruloplasmin	U49430|Cp|12870|ceruloplasmin	AK149523|Cp|12870|ceruloplasmin
mm9_v1_chr2_+_34965011_34965138	0.308213	HNF4A_NR2F1,2.p2	AK041715|Cep110|26920|centrosomal protein 110	NM_012018|Cep110|26920|centrosomal protein 110	AK031338|Cep110|26920|centrosomal protein 110	AK020148|Cep110|26920|centrosomal protein 110	BC038386|Cep110|26920|centrosomal protein 110	BC158010|Cep110|26920|centrosomal protein 110
mm9_v1_chr3_+_135488454_135488592	0.308172	HNF4A_NR2F1,2.p2	AK028215|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	NM_026228|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8	AK016853|Slc39a8|67547|solute carrier family 39 (metal ion transporter), member 8
mm9_v1_chr4_+_126700088_126700202	0.306943	HNF4A_NR2F1,2.p2	AK211570|Sfpq|71514|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm9_v1_chr9_+_108847401_108847459	0.306694	HNF4A_NR2F1,2.p2	AK189558|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK190382|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK214419|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK218783|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK188076|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr14_-_66452720_66452805	0.306053	HNF4A_NR2F1,2.p2	BC033303|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	BC071275|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	AK166457|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	AK050845|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	AK144685|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)	NM_028039|Esco2|71988|establishment of cohesion 1 homolog 2 (S. cerevisiae)
mm9_v1_chr11_-_58751993_58752137	0.305859	HNF4A_NR2F1,2.p2	AK177935|Rnf187|108660|ring finger protein 187	AK196624|Rnf187|108660|ring finger protein 187
mm9_v1_chr11_-_105042428_105042746	0.305586	HNF4A_NR2F1,2.p2	BC099431|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene	AK156756|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene	AK148336|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene	AK006771|1700052K11Rik|73431|RIKEN cDNA 1700052K11 gene
mm9_v1_chr2_-_74497475_74497613	0.305277	HNF4A_NR2F1,2.p2	M93128|Evx2|14029|even skipped homeotic gene 2 homolog	NM_007967|Evx2|14029|even skipped homeotic gene 2 homolog	BC061467|Evx2|14029|even skipped homeotic gene 2 homolog
mm9_v1_chr19_+_5041341_5041422	0.304581	HNF4A_NR2F1,2.p2	AF233580|Brms1|107392|breast cancer metastasis-suppressor 1	AK076729|Brms1|107392|breast cancer metastasis-suppressor 1	BC016108|Brms1|107392|breast cancer metastasis-suppressor 1	NM_134155|Brms1|107392|breast cancer metastasis-suppressor 1	BC003485|Brms1|107392|breast cancer metastasis-suppressor 1
mm9_v1_chr3_+_131748252_131748264	0.303823	HNF4A_NR2F1,2.p2	AK031749|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	NM_020265|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)	BC096448|Dkk2|56811|dickkopf homolog 2 (Xenopus laevis)
mm9_v1_chr13_-_55528131_55528182	0.303563	HNF4A_NR2F1,2.p2	BC037085|F12|58992|coagulation factor XII (Hageman factor)	X99571|F12|58992|coagulation factor XII (Hageman factor)	BC049867|F12|58992|coagulation factor XII (Hageman factor)	BC057921|F12|58992|coagulation factor XII (Hageman factor)	NM_021489|F12|58992|coagulation factor XII (Hageman factor)
mm9_v1_chr6_-_129401762_129402017	0.302675	HNF4A_NR2F1,2.p2	AK049608|Clec1a|243653|C-type lectin domain family 1, member a	AK031121|Clec1a|243653|C-type lectin domain family 1, member a	BC052840|Clec1a|243653|C-type lectin domain family 1, member a	AK036846|Clec1a|243653|C-type lectin domain family 1, member a	AK165920|Clec1a|243653|C-type lectin domain family 1, member a	NM_175526|Clec1a|243653|C-type lectin domain family 1, member a
mm9_v1_chr11_+_70783688_70783714	0.302466	HNF4A_NR2F1,2.p2	BC047996|Rpain|69723|RPA interacting protein	NM_027186|Rpain|69723|RPA interacting protein
mm9_v1_chr4_-_124539414_124539476	0.302462	HNF4A_NR2F1,2.p2	BC065047|Maneal|215090|mannosidase, endo-alpha-like	NM_001007573|Maneal|215090|mannosidase, endo-alpha-like
mm9_v1_chr17_-_25933867_25933930	0.302232	HNF4A_NR2F1,2.p2	BC008695|Metrn|70083|meteorin, glial cell differentiation regulator	BC037181|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133462|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133463|Metrn|70083|meteorin, glial cell differentiation regulator	DQ133464|Metrn|70083|meteorin, glial cell differentiation regulator	AK007688|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr9_+_32443805_32443836	0.302194	HNF4A_NR2F1,2.p2	AK052146|Ets1|23871|E26 avian leukemia oncogene 1, 5' domain	AK085799|LOC434391|434391|hypothetical LOC434391
mm9_v1_chr19_-_42854402_42854474	0.301977	HNF4A_NR2F1,2.p2	AK171225|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	BC058332|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	BC089331|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	AK031397|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	AK154994|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)	NM_019424|Hps1|192236|Hermansky-Pudlak syndrome 1 homolog (human)
mm9_v1_chr1_-_20608010_20608144	0.301659	HNF4A_NR2F1,2.p2	AY438374|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK143992|Pkhd1|241035|polycystic kidney and hepatic disease 1	AY130764|Pkhd1|241035|polycystic kidney and hepatic disease 1	NM_153179|Pkhd1|241035|polycystic kidney and hepatic disease 1	AK052698|Pkhd1|241035|polycystic kidney and hepatic disease 1
mm9_v1_chr6_-_95668770_95668830	0.301407	HNF4A_NR2F1,2.p2	BC080781|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK045176|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK042987|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK156263|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK167136|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172363|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172561|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	AK172633|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit	NM_011507|Suclg2|20917|succinate-Coenzyme A ligase, GDP-forming, beta subunit
mm9_v1_chr6_-_6167113_6167172	0.301083	HNF4A_NR2F1,2.p2	AK151180|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK152237|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AF164632|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	AK150496|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_001177572|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	NM_015829|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr2_+_131088210_131088303	0.301042	HNF4A_NR2F1,2.p2	AK082821|Pank2|74450|pantothenate kinase 2	NM_153501|Pank2|74450|pantothenate kinase 2	AK159175|Pank2|74450|pantothenate kinase 2	AK154080|Pank2|74450|pantothenate kinase 2	BC106184|Pank2|74450|pantothenate kinase 2	AK154023|Pank2|74450|pantothenate kinase 2
mm9_v1_chr14_+_79249036_79249063	0.299952	HNF4A_NR2F1,2.p2	AK033642|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	AK004956|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene	BC019143|1300010F03Rik|219189|RIKEN cDNA 1300010F03 gene
mm9_v1_chr15_+_40486630_40486896	0.299625	HNF4A_NR2F1,2.p2	BC059241|Zfpm2|22762|zinc finger protein, multitype 2	AF118845|Zfpm2|22762|zinc finger protein, multitype 2	AK033131|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr19_+_7631935_7632013	0.299244	HNF4A_NR2F1,2.p2	AK163505|Pla2g16|225845|phospholipase A2, group XVI	NM_139269|Pla2g16|225845|phospholipase A2, group XVI	AX775891|Pla2g16|225845|phospholipase A2, group XVI	AK052657|Pla2g16|225845|phospholipase A2, group XVI	AK039703|Pla2g16|225845|phospholipase A2, group XVI	AK042007|Pla2g16|225845|phospholipase A2, group XVI	BC024581|Pla2g16|225845|phospholipase A2, group XVI
mm9_v1_chr9_-_66440893_66440924	0.29915	HNF4A_NR2F1,2.p2	BC017156|Usp3|235441|ubiquitin specific peptidase 3
mm9_v1_chr7_-_31373735_31373744	0.298751	HNF4A_NR2F1,2.p2	AB182318|Wbp7|75410|WW domain binding protein 7	NM_029274|Wbp7|75410|WW domain binding protein 7
mm9_v1_chr6_+_38383918_38383949	0.298596	HNF4A_NR2F1,2.p2	NM_177185|Ubn2|320538|ubinuclein 2	AK013733|Ubn2|320538|ubinuclein 2	BC051458|Ubn2|320538|ubinuclein 2
mm9_v1_chr2_-_25324650_25324661	0.29721	HNF4A_NR2F1,2.p2	AK002382|Ptgds|19215|prostaglandin D2 synthase (brain)
mm9_v1_chr10_-_127103595_127103798	0.296577	HNF4A_NR2F1,2.p2	AK171180|Nab2|17937|Ngfi-A binding protein 2	BC045139|Nab2|17937|Ngfi-A binding protein 2	AK155501|Nab2|17937|Ngfi-A binding protein 2	AK158688|Nab2|17937|Ngfi-A binding protein 2	U47543|Nab2|17937|Ngfi-A binding protein 2	NM_001122895|Nab2|17937|Ngfi-A binding protein 2	NM_008668|Nab2|17937|Ngfi-A binding protein 2
mm9_v1_chr6_+_47404312_47404467	0.29586	HNF4A_NR2F1,2.p2	BC029260|Cul1|26965|cullin 1	NM_012042|Cul1|26965|cullin 1	AK147004|Cul1|26965|cullin 1	AK165978|Cul1|26965|cullin 1	AK040053|Cul1|26965|cullin 1	AF176910|Cul1|26965|cullin 1	AF136441|Cul1|26965|cullin 1
mm9_v1_chr15_-_44259348_44259361	0.295566	HNF4A_NR2F1,2.p2	
mm9_v1_chr12_+_88488644_88488668	0.295055	HNF4A_NR2F1,2.p2	BC031777|Gstz1|14874|glutathione transferase zeta 1 (maleylacetoacetate isomerase)	NM_010363|Gstz1|14874|glutathione transferase zeta 1 (maleylacetoacetate isomerase)
mm9_v1_chr17_-_45704908_45704999	0.293852	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_+_86465577_86465659	0.293174	HNF4A_NR2F1,2.p2	NM_001145969|Rwdd2a|69519|RWD domain containing 2A	AK006533|Rwdd2a|69519|RWD domain containing 2A	BC115691|Rwdd2a|69519|RWD domain containing 2A	BC115692|Rwdd2a|69519|RWD domain containing 2A	NM_001145968|Rwdd2a|69519|RWD domain containing 2A	NM_027100|Rwdd2a|69519|RWD domain containing 2A
mm9_v1_chr2_+_83564607_83564841	0.292771	HNF4A_NR2F1,2.p2	AK140647|Itgav|16410|integrin alpha V	AK080357|Itgav|16410|integrin alpha V	AK020674|Itgav|16410|integrin alpha V	AK149984|Itgav|16410|integrin alpha V	U14135|Itgav|16410|integrin alpha V	BC021600|Itgav|16410|integrin alpha V	BC133682|Itgav|16410|integrin alpha V
mm9_v1_chr16_-_78576873_78576891	0.292448	HNF4A_NR2F1,2.p2	AK005829|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	BC019957|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr3_+_113733536_113733551	0.292368	HNF4A_NR2F1,2.p2	AK081304|Col11a1|12814|collagen, type XI, alpha 1
mm9_v1_chr11_-_61191548_61191595	0.292002	HNF4A_NR2F1,2.p2	BC031436|Slc47a1|67473|solute carrier family 47, member 1	AK004994|Slc47a1|67473|solute carrier family 47, member 1	NM_026183|Slc47a1|67473|solute carrier family 47, member 1
mm9_v1_chr2_-_154429368_154429412	0.291133	HNF4A_NR2F1,2.p2	BC025796|Pxmp4|59038|peroxisomal membrane protein 4	AJ271476|Pxmp4|59038|peroxisomal membrane protein 4	AK143785|Pxmp4|59038|peroxisomal membrane protein 4	AK156743|Pxmp4|59038|peroxisomal membrane protein 4	AK050647|Pxmp4|59038|peroxisomal membrane protein 4	NM_021534|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr13_-_72101161_72101175	0.290296	HNF4A_NR2F1,2.p2	AK133937|Irx1|16371|Iroquois related homeobox 1 (Drosophila)	NM_010573|Irx1|16371|Iroquois related homeobox 1 (Drosophila)
mm9_v1_chr16_+_92301516_92301565	0.289508	HNF4A_NR2F1,2.p2	AK004538|Fam165b|68936|family with sequence similarity 165, member B	NM_138743|Fam165b|68936|family with sequence similarity 165, member B	AY033901|Fam165b|68936|family with sequence similarity 165, member B	BC005668|Fam165b|68936|family with sequence similarity 165, member B
mm9_v1_chr7_-_134265516_134265584	0.288254	HNF4A_NR2F1,2.p2	BC011191|Qprt|67375|quinolinate phosphoribosyltransferase	NM_133686|Qprt|67375|quinolinate phosphoribosyltransferase	AK010602|Qprt|67375|quinolinate phosphoribosyltransferase	AK019119|Qprt|67375|quinolinate phosphoribosyltransferase
mm9_v1_chr8_-_123632191_123632278	0.288193	HNF4A_NR2F1,2.p2	BC023782|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	AK141278|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	AK083317|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	BC052066|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	NM_001166482|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	NM_172761|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing
mm9_v1_chr6_+_31170394_31170443	0.288034	HNF4A_NR2F1,2.p2	BC099512|2210408F21Rik|73652|RIKEN cDNA 2210408F21 gene	AK008857|2210408F21Rik|73652|RIKEN cDNA 2210408F21 gene	BC021953|2210408F21Rik|73652|RIKEN cDNA 2210408F21 gene
mm9_v1_chr10_+_87322774_87322795	0.287729	HNF4A_NR2F1,2.p2	AK038119|Igf1|16000|insulin-like growth factor 1
mm9_v1_chr15_+_41278949_41279049	0.287563	HNF4A_NR2F1,2.p2	NM_001130166|Oxr1|170719|oxidation resistance 1	AK158703|Oxr1|170719|oxidation resistance 1
mm9_v1_chr2_+_29725034_29725054	0.287524	HNF4A_NR2F1,2.p2	BC138847|Cercam|99151|cerebral endothelial cell adhesion molecule	BC052176|Cercam|99151|cerebral endothelial cell adhesion molecule
mm9_v1_chr11_-_3404756_3404831	0.287188	HNF4A_NR2F1,2.p2	BC022915|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK171029|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK170114|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC051452|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK165718|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK136908|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC131635|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC131634|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK034272|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	NM_172439|Inpp5j|170835|inositol polyphosphate 5-phosphatase J
mm9_v1_chr17_+_56442759_56442848	0.286986	HNF4A_NR2F1,2.p2	NM_001111079|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	NM_010931|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AK146951|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AK145543|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AK147046|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	BC022167|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	AF274046|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1	D87908|Uhrf1|18140|ubiquitin-like, containing PHD and RING finger domains, 1
mm9_v1_chr18_+_74938827_74938895	0.286652	HNF4A_NR2F1,2.p2	AK146007|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK050101|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK167567|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK169359|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	NM_177470|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK167715|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	AK002555|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	BC028901|Acaa2|52538|acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)
mm9_v1_chr16_-_19983049_19983121	0.285294	HNF4A_NR2F1,2.p2	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr11_-_49525870_49525985	0.285216	HNF4A_NR2F1,2.p2	AK187687|Cnot6|104625|CCR4-NOT transcription complex, subunit 6
mm9_v1_chr1_+_133424544_133424596	0.284783	HNF4A_NR2F1,2.p2	AK076058|Fam72a|108900|family with sequence similarity 72, member A	AK041641|Fam72a|108900|family with sequence similarity 72, member A	NM_175382|Fam72a|108900|family with sequence similarity 72, member A	BC106123|Fam72a|108900|family with sequence similarity 72, member A	BC138225|Fam72a|108900|family with sequence similarity 72, member A	BC145667|Fam72a|108900|family with sequence similarity 72, member A
mm9_v1_chr14_+_56097682_56097776	0.284438	HNF4A_NR2F1,2.p2	AB045132|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK018788|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	AK146988|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4	BC003484|Dhrs4|28200|dehydrogenase/reductase (SDR family) member 4
mm9_v1_chr8_-_49075838_49075874	0.284146	HNF4A_NR2F1,2.p2	AK147944|Wwc2|52357|WW, C2 and coiled-coil domain containing 2
mm9_v1_chr8_-_122159431_122159579	0.283902	HNF4A_NR2F1,2.p2	BC043936|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4	NM_025734|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4
mm9_v1_chr7_-_106844101_106844161	0.283771	HNF4A_NR2F1,2.p2	BC096485|Slco2b1|101488|solute carrier organic anion transporter family, member 2b1
mm9_v1_chr9_+_106362970_106362990	0.283767	HNF4A_NR2F1,2.p2	AK178757|Pcbp4|59092|poly(rC) binding protein 4	AK179721|Pcbp4|59092|poly(rC) binding protein 4	AK179802|Pcbp4|59092|poly(rC) binding protein 4	AK187694|Pcbp4|59092|poly(rC) binding protein 4	AK188206|Pcbp4|59092|poly(rC) binding protein 4	AK189619|Pcbp4|59092|poly(rC) binding protein 4
mm9_v1_chr19_+_46139268_46139363	0.283536	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_-_149573693_149573841	0.283167	HNF4A_NR2F1,2.p2	X53337|Ctsd|13033|cathepsin D	AK167867|Ctsd|13033|cathepsin D	AK150622|Ctsd|13033|cathepsin D	AK089294|Ctsd|13033|cathepsin D	AK150364|Ctsd|13033|cathepsin D	AK150579|Ctsd|13033|cathepsin D	AK150636|Ctsd|13033|cathepsin D	AK150694|Ctsd|13033|cathepsin D	AK150768|Ctsd|13033|cathepsin D	AK151256|Ctsd|13033|cathepsin D	AK151275|Ctsd|13033|cathepsin D	AK151276|Ctsd|13033|cathepsin D	AK151374|Ctsd|13033|cathepsin D	AK151829|Ctsd|13033|cathepsin D	AK152168|Ctsd|13033|cathepsin D	AK152187|Ctsd|13033|cathepsin D	AK152188|Ctsd|13033|cathepsin D	AK152458|Ctsd|13033|cathepsin D	AK152567|Ctsd|13033|cathepsin D	AK152578|Ctsd|13033|cathepsin D	AK152680|Ctsd|13033|cathepsin D	AK152828|Ctsd|13033|cathepsin D	AK152881|Ctsd|13033|cathepsin D	AK152892|Ctsd|13033|cathepsin D	AK153191|Ctsd|13033|cathepsin D	AK153291|Ctsd|13033|cathepsin D	AK159097|Ctsd|13033|cathepsin D	AK159209|Ctsd|13033|cathepsin D	AK159490|Ctsd|13033|cathepsin D	AK159580|Ctsd|13033|cathepsin D	AK159896|Ctsd|13033|cathepsin D	AK167698|Ctsd|13033|cathepsin D	AK171195|Ctsd|13033|cathepsin D	AK172583|Ctsd|13033|cathepsin D	AK150363|Ctsd|13033|cathepsin D	AK151962|Ctsd|13033|cathepsin D	AK152406|Ctsd|13033|cathepsin D	AK159743|Ctsd|13033|cathepsin D	AK152036|Ctsd|13033|cathepsin D	AK166864|Ctsd|13033|cathepsin D	AK167750|Ctsd|13033|cathepsin D	AK152593|Ctsd|13033|cathepsin D	BC048900|Ctsd|13033|cathepsin D	BC053937|Ctsd|13033|cathepsin D	BC053940|Ctsd|13033|cathepsin D	AK152638|Ctsd|13033|cathepsin D	BC057931|Ctsd|13033|cathepsin D	AK167143|Ctsd|13033|cathepsin D	AK159512|Ctsd|13033|cathepsin D	NM_009983|Ctsd|13033|cathepsin D	X52886|Ctsd|13033|cathepsin D	AK166938|Ctsd|13033|cathepsin D	AK159440|Ctsd|13033|cathepsin D	AK159970|Ctsd|13033|cathepsin D	AK150946|Ctsd|13033|cathepsin D	AK152045|Ctsd|13033|cathepsin D	AK169139|Ctsd|13033|cathepsin D	AK165227|Ctsd|13033|cathepsin D	AK167366|Ctsd|13033|cathepsin D	AK093885|Ctsd|13033|cathepsin D	BC054758|Ctsd|13033|cathepsin D
mm9_v1_chr9_+_66006025_66006053	0.282597	HNF4A_NR2F1,2.p2	NM_010019|Dapk2|13143|death-associated protein kinase 2	AK158082|Dapk2|13143|death-associated protein kinase 2	AB018002|Dapk2|13143|death-associated protein kinase 2
mm9_v1_chr16_+_20695034_20695235	0.282545	HNF4A_NR2F1,2.p2	BC092532|Fam131a|78408|family with sequence similarity 131, member A	AK049983|Fam131a|78408|family with sequence similarity 131, member A	NM_133778|Fam131a|78408|family with sequence similarity 131, member A
mm9_v1_chr4_-_96220030_96220248	0.281995	HNF4A_NR2F1,2.p2	AK180579|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK186838|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK193212|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK210777|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK078893|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK165663|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK038636|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6
mm9_v1_chr19_+_10257363_10257524	0.281896	HNF4A_NR2F1,2.p2	NM_146094|Fads1|76267|fatty acid desaturase 1	BC026831|Fads1|76267|fatty acid desaturase 1	AK154367|Fads1|76267|fatty acid desaturase 1	BC022139|Fads1|76267|fatty acid desaturase 1	BC026848|Fads1|76267|fatty acid desaturase 1	AB072976|Fads1|76267|fatty acid desaturase 1	AK080706|Fads1|76267|fatty acid desaturase 1	AF061504|Fads1|76267|fatty acid desaturase 1	AK083959|Fads1|76267|fatty acid desaturase 1	BC063053|Fads1|76267|fatty acid desaturase 1
mm9_v1_chr2_+_121976718_121976869	0.281658	HNF4A_NR2F1,2.p2	M10416|B2m|12010|beta-2 microglobulin
mm9_v1_chr5_-_65826956_65826968	0.28135	HNF4A_NR2F1,2.p2	AK167462|Ugdh|22235|UDP-glucose dehydrogenase	AF061017|Ugdh|22235|UDP-glucose dehydrogenase	AK146693|Ugdh|22235|UDP-glucose dehydrogenase	AK168563|Ugdh|22235|UDP-glucose dehydrogenase	AK162298|Ugdh|22235|UDP-glucose dehydrogenase	AK168508|Ugdh|22235|UDP-glucose dehydrogenase
mm9_v1_chr15_+_40486577_40486623	0.281128	HNF4A_NR2F1,2.p2	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr11_+_77992183_77992219	0.280864	HNF4A_NR2F1,2.p2	BC039182|Tlcd1|68385|TLC domain containing 1	AK165432|Tlcd1|68385|TLC domain containing 1
mm9_v1_chr2_+_174167321_174167402	0.280468	HNF4A_NR2F1,2.p2	
mm9_v1_chrX_-_35988279_35988319	0.279825	HNF4A_NR2F1,2.p2	BC029909|C1galt1c1|59048|C1GALT1-specific chaperone 1	NM_021550|C1galt1c1|59048|C1GALT1-specific chaperone 1
mm9_v1_chr17_-_26005645_26005674	0.279478	HNF4A_NR2F1,2.p2	BC024332|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr9_-_8004559_8004652	0.279302	HNF4A_NR2F1,2.p2	BC094313|Yap1|22601|yes-associated protein 1	BC014733|Yap1|22601|yes-associated protein 1	X80508|Yap1|22601|yes-associated protein 1	AK157234|Yap1|22601|yes-associated protein 1	NM_001171147|Yap1|22601|yes-associated protein 1	NM_009534|Yap1|22601|yes-associated protein 1
mm9_v1_chr18_-_12394814_12394820	0.278536	HNF4A_NR2F1,2.p2	AK154282|Npc1|18145|Niemann Pick type C1	AK155379|Npc1|18145|Niemann Pick type C1
mm9_v1_chr5_+_18732863_18732863	0.2785	HNF4A_NR2F1,2.p2	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chr16_+_22892156_22892180	0.277987	HNF4A_NR2F1,2.p2	BC019822|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr1_+_43787442_43787446	0.27709	HNF4A_NR2F1,2.p2	AK049805|1500015O10Rik|78896|RIKEN cDNA 1500015O10 gene	NM_024283|1500015O10Rik|78896|RIKEN cDNA 1500015O10 gene
mm9_v1_chr2_+_154483045_154483087	0.277077	HNF4A_NR2F1,2.p2	BC006905|Chmp4b|75608|chromatin modifying protein 4B
mm9_v1_chr10_+_80640253_80640449	0.277056	HNF4A_NR2F1,2.p2	AK178103|Eef2|13629|eukaryotic translation elongation factor 2	AK188800|Eef2|13629|eukaryotic translation elongation factor 2	AK193129|Eef2|13629|eukaryotic translation elongation factor 2	AK202382|Eef2|13629|eukaryotic translation elongation factor 2	AK214266|Eef2|13629|eukaryotic translation elongation factor 2	U89415|Eef2|13629|eukaryotic translation elongation factor 2	BC060707|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr7_+_31076771_31076772	0.276285	HNF4A_NR2F1,2.p2	NM_001081114|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr6_-_6167086_6167104	0.273894	HNF4A_NR2F1,2.p2	AK029020|Slc25a13|50799|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm9_v1_chr5_+_33715497_33715611	0.273541	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_+_134615022_134615162	0.273502	HNF4A_NR2F1,2.p2	BC055033|Prr14|233895|proline rich 14	NM_145589|Prr14|233895|proline rich 14	AK133884|Prr14|233895|proline rich 14
mm9_v1_chr14_+_47451832_47451844	0.273046	HNF4A_NR2F1,2.p2	AK154797|Cgrrf1|68755|cell growth regulator with ring finger domain 1
mm9_v1_chr17_+_23953056_23953186	0.272843	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_+_51720804_51720838	0.272424	HNF4A_NR2F1,2.p2	AK002587|Aspdh|68352|aspartate dehydrogenase domain containing	NM_026690|Aspdh|68352|aspartate dehydrogenase domain containing	BC019451|Aspdh|68352|aspartate dehydrogenase domain containing
mm9_v1_chr1_+_174249713_174249834	0.272166	HNF4A_NR2F1,2.p2	
mm9_v1_chr10_-_74980017_74980125	0.270529	HNF4A_NR2F1,2.p2	AK040832|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC024851|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC043463|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	NM_175133|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	AK170872|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC118613|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	BC119795|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene	AK157404|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene
mm9_v1_chr19_-_10678747_10678824	0.270352	HNF4A_NR2F1,2.p2	BC021917|Dak|225913|dihydroxyacetone kinase 2 homolog (yeast)	NM_145496|Dak|225913|dihydroxyacetone kinase 2 homolog (yeast)
mm9_v1_chr10_-_90582332_90582452	0.270324	HNF4A_NR2F1,2.p2	AK195219|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK212727|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK216642|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK180258|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK188364|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr11_-_97023157_97023169	0.269823	HNF4A_NR2F1,2.p2	BC004096|Kpnb1|16211|karyopherin (importin) beta 1
mm9_v1_chr11_-_58752365_58752372	0.269302	HNF4A_NR2F1,2.p2	BC096522|Rnf187|108660|ring finger protein 187
mm9_v1_chr17_-_56556337_56556420	0.268907	HNF4A_NR2F1,2.p2	S59186|Ptprs|19280|protein tyrosine phosphatase, receptor type, S
mm9_v1_chr5_-_101148612_101148765	0.268622	HNF4A_NR2F1,2.p2	AY151051|Hpse|15442|heparanase	AY077467|Hpse|15442|heparanase	AF359507|Hpse|15442|heparanase	BC138782|Hpse|15442|heparanase	BC138784|Hpse|15442|heparanase	AK040471|Hpse|15442|heparanase	AK154628|Hpse|15442|heparanase	NM_152803|Hpse|15442|heparanase	AK087283|Hpse|15442|heparanase
mm9_v1_chr19_-_6067723_6067866	0.26837	HNF4A_NR2F1,2.p2	AF480070|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK039028|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK155475|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK014166|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK134512|Tm7sf2|73166|transmembrane 7 superfamily member 2	BC014769|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK037325|Tm7sf2|73166|transmembrane 7 superfamily member 2	NM_028454|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK040016|Tm7sf2|73166|transmembrane 7 superfamily member 2	AK043687|Tm7sf2|73166|transmembrane 7 superfamily member 2
mm9_v1_chr6_+_113339088_113339253	0.268265	HNF4A_NR2F1,2.p2	AK003923|Arpc4|68089|actin related protein 2/3 complex, subunit 4	AK029462|Ttll3|101100|tubulin tyrosine ligase-like family, member 3	NM_001142732|Ttll3|101100|tubulin tyrosine ligase-like family, member 3
mm9_v1_chr7_+_52112520_52112725	0.268237	HNF4A_NR2F1,2.p2	AK160160|Pnkp|59047|polynucleotide kinase 3'- phosphatase	NM_021549|Pnkp|59047|polynucleotide kinase 3'- phosphatase	BC047269|Pnkp|59047|polynucleotide kinase 3'- phosphatase	AK049992|Pnkp|59047|polynucleotide kinase 3'- phosphatase	AK172558|Pnkp|59047|polynucleotide kinase 3'- phosphatase	BC057659|Pnkp|59047|polynucleotide kinase 3'- phosphatase
mm9_v1_chr7_+_52960585_52960678	0.268232	HNF4A_NR2F1,2.p2	NM_016974|Dbp|13170|D site albumin promoter binding protein	BC084676|Dbp|13170|D site albumin promoter binding protein	BC018323|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr7_-_134160864_134160869	0.268182	HNF4A_NR2F1,2.p2	BC003932|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene	NM_030240|2900092E17Rik|67278|RIKEN cDNA 2900092E17 gene
mm9_v1_chrX_+_34335647_34335650	0.268164	HNF4A_NR2F1,2.p2	AK012751|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK002283|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK017881|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK088730|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	X70847|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr11_+_69906223_69906270	0.267531	HNF4A_NR2F1,2.p2	X53042|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr18_+_67934517_67934670	0.267332	HNF4A_NR2F1,2.p2	AK143727|Seh1l|72124|SEH1-like (S. cerevisiae	NM_001039088|Seh1l|72124|SEH1-like (S. cerevisiae	NM_028112|Seh1l|72124|SEH1-like (S. cerevisiae	AK170591|Seh1l|72124|SEH1-like (S. cerevisiae	BC027244|Seh1l|72124|SEH1-like (S. cerevisiae	AK011330|Seh1l|72124|SEH1-like (S. cerevisiae	AK169231|Seh1l|72124|SEH1-like (S. cerevisiae	AK169388|Seh1l|72124|SEH1-like (S. cerevisiae	AK088835|Seh1l|72124|SEH1-like (S. cerevisiae	AK166573|Seh1l|72124|SEH1-like (S. cerevisiae
mm9_v1_chrX_+_95345000_95345120	0.266786	HNF4A_NR2F1,2.p2	X59592|Ar|11835|androgen receptor	S56585|Ar|11835|androgen receptor	AK133647|Ar|11835|androgen receptor	NM_013476|Ar|11835|androgen receptor	X53779|Ar|11835|androgen receptor	X59411|Ar|11835|androgen receptor	M37890|Ar|11835|androgen receptor
mm9_v1_chr9_+_80012873_80012911	0.266172	HNF4A_NR2F1,2.p2	AK135310|Myo6|17920|myosin VI	U49739|Myo6|17920|myosin VI
mm9_v1_chr15_-_44259378_44259454	0.265567	HNF4A_NR2F1,2.p2	AK167855|Nudcd1|67429|NudC domain containing 1	AK168122|Nudcd1|67429|NudC domain containing 1	AK029339|Nudcd1|67429|NudC domain containing 1	BC031583|Nudcd1|67429|NudC domain containing 1	AK077673|Nudcd1|67429|NudC domain containing 1	AK083587|Nudcd1|67429|NudC domain containing 1
mm9_v1_chr15_+_98956940_98957052	0.265386	HNF4A_NR2F1,2.p2	BC072579|Spats2|72572|spermatogenesis associated, serine-rich 2
mm9_v1_chr1_-_194597214_194597412	0.264713	HNF4A_NR2F1,2.p2	AK028230|Hhat|226861|hedgehog acyltransferase	AK134661|Hhat|226861|hedgehog acyltransferase	AK172126|Hhat|226861|hedgehog acyltransferase	BC008159|Hhat|226861|hedgehog acyltransferase	NM_144881|Hhat|226861|hedgehog acyltransferase
mm9_v1_chr5_-_114280434_114280521	0.264551	HNF4A_NR2F1,2.p2	AK089214|Selplg|20345|selectin, platelet (p-selectin) ligand	AK155762|Selplg|20345|selectin, platelet (p-selectin) ligand	AK156933|Selplg|20345|selectin, platelet (p-selectin) ligand	AK158134|Selplg|20345|selectin, platelet (p-selectin) ligand	BC003874|Selplg|20345|selectin, platelet (p-selectin) ligand	AK172077|Selplg|20345|selectin, platelet (p-selectin) ligand	AK171693|Selplg|20345|selectin, platelet (p-selectin) ligand	AK156551|Selplg|20345|selectin, platelet (p-selectin) ligand	AK089188|Selplg|20345|selectin, platelet (p-selectin) ligand	NM_009151|Selplg|20345|selectin, platelet (p-selectin) ligand
mm9_v1_chr7_-_51746246_51746260	0.264132	HNF4A_NR2F1,2.p2	AK206197|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK208212|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK215955|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK216646|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene
mm9_v1_chr15_-_81702298_81702350	0.262303	HNF4A_NR2F1,2.p2	AK163247|Phf5a|68479|PHD finger protein 5A	AK143590|Phf5a|68479|PHD finger protein 5A	NM_026737|Phf5a|68479|PHD finger protein 5A	AK167955|Phf5a|68479|PHD finger protein 5A	BC025161|Phf5a|68479|PHD finger protein 5A	AK003520|Phf5a|68479|PHD finger protein 5A	AF479288|Phf5a|68479|PHD finger protein 5A	AK167932|Phf5a|68479|PHD finger protein 5A
mm9_v1_chr5_-_5694033_5694105	0.261605	HNF4A_NR2F1,2.p2	AK145468|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK166607|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK162343|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK165644|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK089927|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103156|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103157|Steap2|74051|six transmembrane epithelial antigen of prostate 2
mm9_v1_chr10_+_80586394_80586698	0.261424	HNF4A_NR2F1,2.p2	AK140101|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK192399|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK202988|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK212487|Map2k2|26396|mitogen-activated protein kinase kinase 2	AK216389|Map2k2|26396|mitogen-activated protein kinase kinase 2
mm9_v1_chr18_+_50139080_50139182	0.261399	HNF4A_NR2F1,2.p2	NM_001177759|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	NM_001177760|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK170322|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8	AK163339|Tnfaip8|106869|tumor necrosis factor, alpha-induced protein 8
mm9_v1_chr1_-_173957407_173957430	0.261139	HNF4A_NR2F1,2.p2	AK049613|Vangl2|93840|vang-like 2 (van gogh, Drosophila)	AK046036|Vangl2|93840|vang-like 2 (van gogh, Drosophila)
mm9_v1_chr6_+_43215604_43215702	0.260917	HNF4A_NR2F1,2.p2	NM_133674|Arhgef5|54324|Rho guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr10_-_61949345_61949552	0.259659	HNF4A_NR2F1,2.p2	AK028096|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_001113355|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK086851|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK150244|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK151360|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC007148|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK149859|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	BC058236|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK147989|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK152424|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK165853|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	S41204|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK159783|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK167592|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168537|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	AK168213|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)	NM_133672|Vps26a|30930|vacuolar protein sorting 26 homolog A (yeast)
mm9_v1_chr7_+_148021503_148021519	0.259488	HNF4A_NR2F1,2.p2	DQ225768|1190003J15Rik|76974|RIKEN cDNA 1190003J15 gene
mm9_v1_chr17_+_87362612_87362644	0.259204	HNF4A_NR2F1,2.p2	AB060650|Rhoq|104215|ras homolog gene family, member Q	BC048813|Rhoq|104215|ras homolog gene family, member Q
mm9_v1_chr7_-_52973262_52973371	0.25903	HNF4A_NR2F1,2.p2	AK146414|Sphk2|56632|sphingosine kinase 2	AK151990|Sphk2|56632|sphingosine kinase 2	BC053737|Sphk2|56632|sphingosine kinase 2	AF245448|Sphk2|56632|sphingosine kinase 2	NM_001172561|Sphk2|56632|sphingosine kinase 2	NM_203280|Sphk2|56632|sphingosine kinase 2
mm9_v1_chr5_+_136592559_136592606	0.258721	HNF4A_NR2F1,2.p2	AK158610|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	NM_011293|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	AK158644|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	BC042939|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J	D85818|Polr2j|20022|polymerase (RNA) II (DNA directed) polypeptide J
mm9_v1_chr7_-_87948093_87948239	0.258401	HNF4A_NR2F1,2.p2	BC037685|Iqgap1|29875|IQ motif containing GTPase activating protein 1	BC046385|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK163056|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK029434|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK087141|Iqgap1|29875|IQ motif containing GTPase activating protein 1	BC022105|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK129044|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK016896|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AF240630|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK164482|Iqgap1|29875|IQ motif containing GTPase activating protein 1	NM_016721|Iqgap1|29875|IQ motif containing GTPase activating protein 1
mm9_v1_chrX_-_71618556_71618610	0.258316	HNF4A_NR2F1,2.p2	EU599043|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599044|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	EU599045|Slc10a3-ubl4|100169864|Slc10a3-Ubl4 readthrough transcript	BC027440|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3	NM_145406|Slc10a3|214601|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm9_v1_chr11_-_118263125_118263276	0.258057	HNF4A_NR2F1,2.p2	AK152182|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK155031|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK137836|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	L16894|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	BC090658|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	NM_011150|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	X67809|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK153313|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK153396|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK079915|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein	AK150021|Lgals3bp|19039|lectin, galactoside-binding, soluble, 3 binding protein
mm9_v1_chr10_-_40602888_40602905	0.256615	HNF4A_NR2F1,2.p2	AK040680|Cdc40|71713|cell division cycle 40 homolog (yeast)
mm9_v1_chr9_-_114690887_114691007	0.256429	HNF4A_NR2F1,2.p2	AK151785|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AF188504|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168280|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	NM_133978|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC038633|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK167886|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	BC026773|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK168024|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AY241869|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7	AK040123|Cmtm7|102545|CKLF-like MARVEL transmembrane domain containing 7
mm9_v1_chr4_-_82505410_82505478	0.256291	HNF4A_NR2F1,2.p2	BC043110|Zdhhc21|68268|zinc finger, DHHC domain containing 21	AK020293|Zdhhc21|68268|zinc finger, DHHC domain containing 21	AK148344|Zdhhc21|68268|zinc finger, DHHC domain containing 21	AK144108|Zdhhc21|68268|zinc finger, DHHC domain containing 21
mm9_v1_chr1_-_133423902_133423973	0.256048	HNF4A_NR2F1,2.p2	AK143649|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	NM_001081011|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr2_-_70893583_70893669	0.256004	HNF4A_NR2F1,2.p2	BC004636|Mettl8|228019|methyltransferase like 8	AK087927|Mettl8|228019|methyltransferase like 8	BC057960|Mettl8|228019|methyltransferase like 8	AK039461|Mettl8|228019|methyltransferase like 8	AK042669|Mettl8|228019|methyltransferase like 8	DQ093357|Mettl8|228019|methyltransferase like 8	DQ093358|Mettl8|228019|methyltransferase like 8	NM_145524|Mettl8|228019|methyltransferase like 8
mm9_v1_chr9_+_59504168_59504414	0.255876	HNF4A_NR2F1,2.p2	AK151724|Pkm2|18746|pyruvate kinase, muscle	AK153483|Pkm2|18746|pyruvate kinase, muscle	AK171106|Pkm2|18746|pyruvate kinase, muscle	AK155655|Pkm2|18746|pyruvate kinase, muscle	AK170892|Pkm2|18746|pyruvate kinase, muscle	AK083076|Pkm2|18746|pyruvate kinase, muscle	AK135397|Pkm2|18746|pyruvate kinase, muscle	AK155110|Pkm2|18746|pyruvate kinase, muscle	AK168943|Pkm2|18746|pyruvate kinase, muscle	AK171023|Pkm2|18746|pyruvate kinase, muscle	AK171033|Pkm2|18746|pyruvate kinase, muscle	AK154695|Pkm2|18746|pyruvate kinase, muscle	AK169872|Pkm2|18746|pyruvate kinase, muscle	AK200951|Pkm2|18746|pyruvate kinase, muscle	BC016619|Pkm2|18746|pyruvate kinase, muscle	NM_011099|Pkm2|18746|pyruvate kinase, muscle
mm9_v1_chr19_+_46781939_46782006	0.255808	HNF4A_NR2F1,2.p2	AK006571|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AF166383|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AK011320|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	BC145663|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	AK002801|As3mt|57344|arsenic (+3 oxidation state) methyltransferase	BC013468|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr19_-_5457470_5457607	0.255791	HNF4A_NR2F1,2.p2	BC016659|Ccdc85b|240514|coiled-coil domain containing 85B	BC094592|Ccdc85b|240514|coiled-coil domain containing 85B	BC058411|Ccdc85b|240514|coiled-coil domain containing 85B	NM_198616|Ccdc85b|240514|coiled-coil domain containing 85B
mm9_v1_chr3_+_88940063_88940079	0.255767	HNF4A_NR2F1,2.p2	D63764|Pklr|18770|pyruvate kinase liver and red blood cell	NM_013631|Pklr|18770|pyruvate kinase liver and red blood cell	S79731|Pklr|18770|pyruvate kinase liver and red blood cell	BC152327|Pklr|18770|pyruvate kinase liver and red blood cell	BC152542|Pklr|18770|pyruvate kinase liver and red blood cell
mm9_v1_chr7_-_25873560_25873562	0.255114	HNF4A_NR2F1,2.p2	
mm9_v1_chr15_-_27560282_27560465	0.255046	HNF4A_NR2F1,2.p2	AK134955|Fam105b|432940|family with sequence similarity 105, member B	AK150371|Fam105b|432940|family with sequence similarity 105, member B	NM_001013792|Fam105b|432940|family with sequence similarity 105, member B
mm9_v1_chr4_+_130469187_130469272	0.253705	HNF4A_NR2F1,2.p2	AK171481|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089432|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171269|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171285|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171575|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172486|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171057|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171280|Laptm5|16792|lysosomal-associated protein transmembrane 5	U51239|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171571|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170690|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171250|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171053|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089508|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171149|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170867|Laptm5|16792|lysosomal-associated protein transmembrane 5	AF364050|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171270|Laptm5|16792|lysosomal-associated protein transmembrane 5	U29539|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK031802|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK050633|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK153877|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK163146|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171105|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171172|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171213|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171244|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171547|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172306|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK172707|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK089535|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171116|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171193|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171236|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK150299|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK152918|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK155744|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171274|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK171562|Laptm5|16792|lysosomal-associated protein transmembrane 5	AK170438|Laptm5|16792|lysosomal-associated protein transmembrane 5	NM_010686|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC020993|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC055057|Laptm5|16792|lysosomal-associated protein transmembrane 5	BC114403|Laptm5|16792|lysosomal-associated protein transmembrane 5
mm9_v1_chr16_+_18249036_18249160	0.253208	HNF4A_NR2F1,2.p2	AK146391|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC046976|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC027431|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK034102|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK080170|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK133844|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151422|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK153190|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK169240|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK150482|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151311|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151725|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK151778|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152055|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152201|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152363|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152548|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK152903|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK153043|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	BC038486|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)
mm9_v1_chr1_-_59030272_59030346	0.251663	HNF4A_NR2F1,2.p2	AK036650|Trak2|70827|trafficking protein, kinesin binding 2	AK048261|Trak2|70827|trafficking protein, kinesin binding 2	AK014647|Trak2|70827|trafficking protein, kinesin binding 2	NM_172406|Trak2|70827|trafficking protein, kinesin binding 2
mm9_v1_chr19_-_60019266_60019313	0.251383	HNF4A_NR2F1,2.p2	AK154916|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)	NM_001033172|Rab11fip2|74998|RAB11 family interacting protein 2 (class I)
mm9_v1_chr18_-_36904173_36904177	0.250927	HNF4A_NR2F1,2.p2	AK018732|Ndufa2|17991|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2
mm9_v1_chr10_-_13272820_13272870	0.250733	HNF4A_NR2F1,2.p2	BC033415|Pex3|56535|peroxisomal biogenesis factor 3	AK075820|Pex3|56535|peroxisomal biogenesis factor 3	AF152996|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr5_+_122608248_122608342	0.250203	HNF4A_NR2F1,2.p2	AK147131|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	NM_013636|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	BC021646|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK152422|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform	AK169336|Ppp1cc|19047|protein phosphatase 1, catalytic subunit, gamma isoform
mm9_v1_chr3_-_117571789_117571835	0.250037	HNF4A_NR2F1,2.p2	AK170966|Snx7|76561|sorting nexin 7	AK052487|Snx7|76561|sorting nexin 7	AK011015|Snx7|76561|sorting nexin 7
mm9_v1_chr14_+_34736772_34736788	0.249539	HNF4A_NR2F1,2.p2	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr13_+_93125131_93125146	0.249147	HNF4A_NR2F1,2.p2	V00731|Dhfr|13361|dihydrofolate reductase
mm9_v1_chr18_+_67448839_67448957	0.248533	HNF4A_NR2F1,2.p2	AK154489|Impa2|114663|inositol (myo)-1(or 4)-monophosphatase 2	AK170962|Impa2|114663|inositol (myo)-1(or 4)-monophosphatase 2	AF353730|Impa2|114663|inositol (myo)-1(or 4)-monophosphatase 2	NM_053261|Impa2|114663|inositol (myo)-1(or 4)-monophosphatase 2	AK171626|Impa2|114663|inositol (myo)-1(or 4)-monophosphatase 2	AK154845|Impa2|114663|inositol (myo)-1(or 4)-monophosphatase 2	BC011093|Impa2|114663|inositol (myo)-1(or 4)-monophosphatase 2
mm9_v1_chr3_+_137806411_137806513	0.247674	HNF4A_NR2F1,2.p2	AK089967|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	AK145681|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC098478|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	AK146481|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC090650|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	NM_175389|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2	BC141035|Rg9mtd2|108943|RNA (guanine-9-) methyltransferase domain containing 2
mm9_v1_chr3_-_88351996_88352227	0.246783	HNF4A_NR2F1,2.p2	AB232620|Rab25|53868|RAB25, member RAS oncogene family	AF119675|Rab25|53868|RAB25, member RAS oncogene family	BC006624|Rab25|53868|RAB25, member RAS oncogene family	AK003260|Rab25|53868|RAB25, member RAS oncogene family	NM_016899|Rab25|53868|RAB25, member RAS oncogene family
mm9_v1_chr7_-_125848966_125849043	0.246733	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_22924699_22924786	0.246694	HNF4A_NR2F1,2.p2	BC084584|Acbd5|74159|acyl-Coenzyme A binding domain containing 5
mm9_v1_chr12_-_33777667_33777744	0.246535	HNF4A_NR2F1,2.p2	BC138911|Cdhr3|68764|cadherin-related family member 3	AK047666|Cdhr3|68764|cadherin-related family member 3	AK049806|Cdhr3|68764|cadherin-related family member 3	NM_001024478|Cdhr3|68764|cadherin-related family member 3
mm9_v1_chr13_-_78337844_78338043	0.24623	HNF4A_NR2F1,2.p2	U07625|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1	BC048695|Nr2f1|13865|nuclear receptor subfamily 2, group F, member 1
mm9_v1_chr11_-_102962905_102962973	0.245697	HNF4A_NR2F1,2.p2	BC031392|Plcd3|72469|phospholipase C, delta 3	AK046669|Plcd3|72469|phospholipase C, delta 3	AK164809|Plcd3|72469|phospholipase C, delta 3	AK166977|Plcd3|72469|phospholipase C, delta 3	NM_152813|Plcd3|72469|phospholipase C, delta 3
mm9_v1_chr3_+_95021378_95021403	0.245538	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_-_116313684_116313733	0.244928	HNF4A_NR2F1,2.p2	AK005162|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011157|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011209|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011221|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr19_-_10175990_10176185	0.244873	HNF4A_NR2F1,2.p2	AF126798|Fads2|56473|fatty acid desaturase 2	NM_019699|Fads2|56473|fatty acid desaturase 2	AK143524|Fads2|56473|fatty acid desaturase 2	AK032633|Fads2|56473|fatty acid desaturase 2	AK083282|Fads2|56473|fatty acid desaturase 2	AK031337|Fads2|56473|fatty acid desaturase 2
mm9_v1_chr1_+_74379182_74379257	0.244688	HNF4A_NR2F1,2.p2	AB041609|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	NM_019999|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK086034|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK158483|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK041238|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia
mm9_v1_chr2_-_4933760_4933836	0.244263	HNF4A_NR2F1,2.p2	AK021211|Mcm10|70024|minichromosome maintenance deficient 10 (S. cerevisiae)	AK041406|Mcm10|70024|minichromosome maintenance deficient 10 (S. cerevisiae)	AK030780|Mcm10|70024|minichromosome maintenance deficient 10 (S. cerevisiae)	BC094576|Mcm10|70024|minichromosome maintenance deficient 10 (S. cerevisiae)	NM_027290|Mcm10|70024|minichromosome maintenance deficient 10 (S. cerevisiae)
mm9_v1_chr9_+_89949315_89949397	0.244045	HNF4A_NR2F1,2.p2	AK157376|Ctsh|13036|cathepsin H	AK171550|Ctsh|13036|cathepsin H	U06119|Ctsh|13036|cathepsin H	BC080767|Ctsh|13036|cathepsin H	AK151877|Ctsh|13036|cathepsin H	BC006878|Ctsh|13036|cathepsin H	AK017638|Ctsh|13036|cathepsin H	AK160026|Ctsh|13036|cathepsin H	AK167498|Ctsh|13036|cathepsin H	AK150583|Ctsh|13036|cathepsin H	AK149949|Ctsh|13036|cathepsin H
mm9_v1_chr8_+_108454116_108454374	0.243277	HNF4A_NR2F1,2.p2	
mm9_v1_chr17_-_46811556_46811599	0.242932	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_-_40800995_40801058	0.242179	HNF4A_NR2F1,2.p2	BC026824|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	J03880|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	AK154393|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	BC053006|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	NM_022305|B4galt1|14595|UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1
mm9_v1_chr4_+_130037378_130037455	0.241922	HNF4A_NR2F1,2.p2	NM_025645|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK002371|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK152287|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK152352|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK169605|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK148443|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	BC058365|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK004277|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)	AK136135|Snrnp40|66585|small nuclear ribonucleoprotein 40 (U5)
mm9_v1_chr7_-_56136965_56137089	0.241644	HNF4A_NR2F1,2.p2	AY957576|E2f8|108961|E2F transcription factor 8
mm9_v1_chr5_+_117570113_117570195	0.241273	HNF4A_NR2F1,2.p2	AK040531|Taok3|330177|TAO kinase 3	BC158072|Taok3|330177|TAO kinase 3
mm9_v1_chr16_-_90934985_90935126	0.241032	HNF4A_NR2F1,2.p2	AK003413|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	BC019533|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK018510|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK045905|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	NM_026502|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene
mm9_v1_chr10_+_66648458_66648510	0.240588	HNF4A_NR2F1,2.p2	AK087621|Jmjd1c|108829|jumonji domain containing 1C	AK170460|Jmjd1c|108829|jumonji domain containing 1C	AK135461|Jmjd1c|108829|jumonji domain containing 1C	AK085500|Jmjd1c|108829|jumonji domain containing 1C	AK133016|Jmjd1c|108829|jumonji domain containing 1C
mm9_v1_chr7_-_31741729_31741777	0.240259	HNF4A_NR2F1,2.p2	AK146871|Usf2|22282|upstream transcription factor 2	AB221562|Usf2|22282|upstream transcription factor 2
mm9_v1_chr3_-_89083562_89083576	0.239356	HNF4A_NR2F1,2.p2	AK009144|Efna1|13636|ephrin A1	NM_010107|Efna1|13636|ephrin A1
mm9_v1_chr11_-_100831909_100831946	0.238951	HNF4A_NR2F1,2.p2	BC110698|Ptrf|19285|polymerase I and transcript release factor	AK169463|Ptrf|19285|polymerase I and transcript release factor	NM_008986|Ptrf|19285|polymerase I and transcript release factor
mm9_v1_chr1_+_174437040_174437140	0.238923	HNF4A_NR2F1,2.p2	AK019231|Tagln2|21346|transgelin 2
mm9_v1_chr11_+_69906145_69906162	0.238461	HNF4A_NR2F1,2.p2	BC011197|Asgr2|11890|asialoglycoprotein receptor 2	NM_007493|Asgr2|11890|asialoglycoprotein receptor 2
mm9_v1_chr16_+_23058322_23058435	0.238236	HNF4A_NR2F1,2.p2	NM_001102411|Kng1|16644|kininogen 1	NM_001102412|Kng1|16644|kininogen 1	NM_023125|Kng1|16644|kininogen 1	AK005547|Kng1|16644|kininogen 1	BC108936|Kng1|16644|kininogen 1	BC018158|Kng1|16644|kininogen 1
mm9_v1_chr1_-_166371638_166371729	0.237628	HNF4A_NR2F1,2.p2	AK162938|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr13_+_91881065_91881204	0.237481	HNF4A_NR2F1,2.p2	AK034622|Acot12|74156|acyl-CoA thioesterase 12	AK004905|Acot12|74156|acyl-CoA thioesterase 12	AK033663|Acot12|74156|acyl-CoA thioesterase 12	NM_028790|Acot12|74156|acyl-CoA thioesterase 12	AB078618|Acot12|74156|acyl-CoA thioesterase 12	BC025852|Acot12|74156|acyl-CoA thioesterase 12
mm9_v1_chr16_-_37654443_37654469	0.236813	HNF4A_NR2F1,2.p2	BC096421|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	AK004958|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	BC087907|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	AK009807|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	AK018707|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	NM_026610|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	BC056229|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm9_v1_chr15_+_81494352_81494363	0.236608	HNF4A_NR2F1,2.p2	AK146632|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr6_+_42195911_42195967	0.23627	HNF4A_NR2F1,2.p2	NM_029555|Gstk1|76263|glutathione S-transferase kappa 1	AK002661|Gstk1|76263|glutathione S-transferase kappa 1
mm9_v1_chr7_-_91262792_91262799	0.235465	HNF4A_NR2F1,2.p2	AK211213|Fam108c|70178|family with sequence similarity 108, member C
mm9_v1_chr15_-_79845406_79845411	0.235133	HNF4A_NR2F1,2.p2	AK087840|Pdgfb|18591|platelet derived growth factor, B polypeptide
mm9_v1_chr1_-_173126368_173126402	0.234487	HNF4A_NR2F1,2.p2	AK032164|Pcp4l1|66425|Purkinje cell protein 4-like 1	AK075738|Pcp4l1|66425|Purkinje cell protein 4-like 1	AK002772|Pcp4l1|66425|Purkinje cell protein 4-like 1	AY304481|Pcp4l1|66425|Purkinje cell protein 4-like 1	NM_025557|Pcp4l1|66425|Purkinje cell protein 4-like 1
mm9_v1_chr9_-_21936207_21936326	0.233727	HNF4A_NR2F1,2.p2	BC012911|Acp5|11433|acid phosphatase 5, tartrate resistant	BC029644|Acp5|11433|acid phosphatase 5, tartrate resistant	BC019160|Acp5|11433|acid phosphatase 5, tartrate resistant	NM_001102404|Acp5|11433|acid phosphatase 5, tartrate resistant
mm9_v1_chr4_+_43681807_43681971	0.233671	HNF4A_NR2F1,2.p2	AK029713|Tmem8b|242409|transmembrane protein 8B	NM_001085508|Tmem8b|242409|transmembrane protein 8B	BC147569|Tmem8b|242409|transmembrane protein 8B	BC147574|Tmem8b|242409|transmembrane protein 8B	BC151067|Tmem8b|242409|transmembrane protein 8B	BC151070|Tmem8b|242409|transmembrane protein 8B
mm9_v1_chr3_-_89767143_89767212	0.23344	HNF4A_NR2F1,2.p2	AK155736|Atp8b2|54667|ATPase, class I, type 8B, member 2
mm9_v1_chr11_+_98902810_98903140	0.2327	HNF4A_NR2F1,2.p2	
mm9_v1_chr1_+_137914574_137914625	0.232673	HNF4A_NR2F1,2.p2	NM_025439|Tmem9|66241|transmembrane protein 9	AK005248|Tmem9|66241|transmembrane protein 9	AK021225|Tmem9|66241|transmembrane protein 9	AK154423|Tmem9|66241|transmembrane protein 9	BC016524|Tmem9|66241|transmembrane protein 9	AK134909|Tmem9|66241|transmembrane protein 9	BC048017|Tmem9|66241|transmembrane protein 9	BC020291|Tmem9|66241|transmembrane protein 9
mm9_v1_chr9_+_103966032_103966080	0.232301	HNF4A_NR2F1,2.p2	AK077531|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	NM_175324|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	AK145561|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	AK128998|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	AK145834|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	BC045199|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11
mm9_v1_chr7_-_35597470_35597729	0.232138	HNF4A_NR2F1,2.p2	AK005217|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AF308145|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	BC051124|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK038952|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	AK051290|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	NM_175140|Chst8|68947|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
mm9_v1_chr2_-_25978296_25978309	0.232079	HNF4A_NR2F1,2.p2	BC022103|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	AK002651|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr7_+_4642529_4642529	0.232003	HNF4A_NR2F1,2.p2	BC086636|Brsk1|381979|BR serine/threonine kinase 1	NM_001003920|Brsk1|381979|BR serine/threonine kinase 1	NM_001168572|Brsk1|381979|BR serine/threonine kinase 1
mm9_v1_chr5_-_125821251_125821395	0.231454	HNF4A_NR2F1,2.p2	CT010222|Scarb1|20778|scavenger receptor class B, member 1	U37799|Scarb1|20778|scavenger receptor class B, member 1	AK158122|Scarb1|20778|scavenger receptor class B, member 1	AK010622|Scarb1|20778|scavenger receptor class B, member 1	AK033114|Scarb1|20778|scavenger receptor class B, member 1	AK145588|Scarb1|20778|scavenger receptor class B, member 1
mm9_v1_chr2_-_132073389_132073439	0.231063	HNF4A_NR2F1,2.p2	BC080755|5730494N06Rik|70612|RIKEN cDNA 5730494N06 gene
mm9_v1_chr17_-_45739015_45739052	0.23068	HNF4A_NR2F1,2.p2	DQ190000|Gm7325|653016|predicted gene 7325	NM_001177468|Gm7325|653016|predicted gene 7325	NM_001177469|Gm7325|653016|predicted gene 7325
mm9_v1_chr7_-_25772525_25772570	0.228783	HNF4A_NR2F1,2.p2	BC040512|Atp1a3|232975|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm9_v1_chr11_-_79317583_79317590	0.228178	HNF4A_NR2F1,2.p2	NM_019409|Omg|18377|oligodendrocyte myelin glycoprotein	AK136910|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr17_-_33053945_33054090	0.227984	HNF4A_NR2F1,2.p2	BC094016|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14	AF233644|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14	AB037540|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14	NM_022434|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14	BC011228|Cyp4f14|64385|cytochrome P450, family 4, subfamily f, polypeptide 14
mm9_v1_chr8_+_125927015_125927184	0.227406	HNF4A_NR2F1,2.p2	AK007744|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK190180|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK219335|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr10_-_75236129_75236158	0.227167	HNF4A_NR2F1,2.p2	AK144193|Ddt|13202|D-dopachrome tautomerase
mm9_v1_chr14_+_67254087_67254180	0.227061	HNF4A_NR2F1,2.p2	AK085653|Adra1a|11549|adrenergic receptor, alpha 1a	AK079597|Adra1a|11549|adrenergic receptor, alpha 1a	NM_013461|Adra1a|11549|adrenergic receptor, alpha 1a	AK050183|Adra1a|11549|adrenergic receptor, alpha 1a	AK042759|Adra1a|11549|adrenergic receptor, alpha 1a	AK138919|Adra1a|11549|adrenergic receptor, alpha 1a
mm9_v1_chr11_-_98261774_98261803	0.226599	HNF4A_NR2F1,2.p2	NM_001033537|Pgap3|320655|post-GPI attachment to proteins 3
mm9_v1_chr18_+_35278585_35278617	0.225863	HNF4A_NR2F1,2.p2	BC105576|Ctnna1|12385|catenin (cadherin associated protein), alpha 1	AK004623|Ctnna1|12385|catenin (cadherin associated protein), alpha 1
mm9_v1_chr1_-_14299936_14300280	0.225228	HNF4A_NR2F1,2.p2	BC066860|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK045320|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK042412|Eya1|14048|eyes absent 1 homolog (Drosophila)	BC060260|Eya1|14048|eyes absent 1 homolog (Drosophila)	NM_010164|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK153788|Eya1|14048|eyes absent 1 homolog (Drosophila)
mm9_v1_chr8_-_83262881_83263070	0.225204	HNF4A_NR2F1,2.p2	AF325921|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	BC009130|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	AF375046|Smarca5|93762|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm9_v1_chr2_-_130455670_130455749	0.224918	HNF4A_NR2F1,2.p2	BC052898|Fastkd5|380601|FAST kinase domains 5	AF360997|Ubox5|140629|U box domain containing 5	AK034114|Ubox5|140629|U box domain containing 5	NM_080562|Ubox5|140629|U box domain containing 5	AK158052|Ubox5|140629|U box domain containing 5	AK171070|Ubox5|140629|U box domain containing 5	AK005195|Ubox5|140629|U box domain containing 5	AK143929|Fastkd5|380601|FAST kinase domains 5	AK170100|Ubox5|140629|U box domain containing 5
mm9_v1_chr15_-_54109855_54110038	0.224851	HNF4A_NR2F1,2.p2	BC049782|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AK140244|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	U94331|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AK146105|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AB013898|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	NM_008764|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm9_v1_chr6_+_17643923_17644228	0.224783	HNF4A_NR2F1,2.p2	BC024652|St7|64213|suppression of tumorigenicity 7	AY007792|St7|64213|suppression of tumorigenicity 7	AY007793|St7|64213|suppression of tumorigenicity 7
mm9_v1_chr1_-_173290841_173290950	0.224424	HNF4A_NR2F1,2.p2	BC141196|Klhdc9|68874|kelch domain containing 9	AK140290|Klhdc9|68874|kelch domain containing 9	NM_001033039|Klhdc9|68874|kelch domain containing 9
mm9_v1_chr19_+_4745119_4745306	0.224392	HNF4A_NR2F1,2.p2	BC079628|Spnb3|20743|spectrin beta 3	BC048851|Spnb3|20743|spectrin beta 3
mm9_v1_chr17_+_56110138_56110224	0.223777	HNF4A_NR2F1,2.p2	BC052026|Shd|20420|src homology 2 domain-containing transforming protein D	BC079574|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr7_+_17428413_17428564	0.22361	HNF4A_NR2F1,2.p2	AK037030|Prkd2|101540|protein kinase D2	NM_178900|Prkd2|101540|protein kinase D2	AK154029|Prkd2|101540|protein kinase D2
mm9_v1_chr11_+_97547236_97547285	0.223275	HNF4A_NR2F1,2.p2	NM_001085500|Cisd3|217149|CDGSH iron sulfur domain 3	BC056217|Cisd3|217149|CDGSH iron sulfur domain 3
mm9_v1_chr4_-_41450064_41450152	0.222933	HNF4A_NR2F1,2.p2	BC137640|AI464131|329828|expressed sequence AI464131	BC140956|AI464131|329828|expressed sequence AI464131	AK173117|AI464131|329828|expressed sequence AI464131	NM_001085515|AI464131|329828|expressed sequence AI464131
mm9_v1_chr2_+_172847371_172847458	0.222902	HNF4A_NR2F1,2.p2	AK166609|Rbm38|56190|RNA binding motif protein 38	NM_019547|Rbm38|56190|RNA binding motif protein 38	BC006687|Rbm38|56190|RNA binding motif protein 38	AK162141|Rbm38|56190|RNA binding motif protein 38	AK146026|Rbm38|56190|RNA binding motif protein 38	AK172625|Rbm38|56190|RNA binding motif protein 38	BC085307|Rbm38|56190|RNA binding motif protein 38
mm9_v1_chr11_+_78075242_78075302	0.222834	HNF4A_NR2F1,2.p2	AK150829|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	NM_001002004|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC080706|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	AK149719|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC075633|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC019798|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr13_-_35085906_35085940	0.222008	HNF4A_NR2F1,2.p2	BC001983|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase	AK182614|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase
mm9_v1_chr1_+_133807034_133807132	0.221774	HNF4A_NR2F1,2.p2	NM_001145804|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	NM_175294|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AB049825|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	AK078816|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1	BC039951|Nucks1|98415|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm9_v1_chr16_+_22892125_22892139	0.22129	HNF4A_NR2F1,2.p2	BC012678|Ahsg|11625|alpha-2-HS-glycoprotein	S96534|Ahsg|11625|alpha-2-HS-glycoprotein
mm9_v1_chr9_+_92352215_92352231	0.220957	HNF4A_NR2F1,2.p2	AK035919|Plscr4|235527|phospholipid scramblase 4	AK045372|Plscr4|235527|phospholipid scramblase 4	AK165919|Plscr4|235527|phospholipid scramblase 4	NM_178711|Plscr4|235527|phospholipid scramblase 4	AK035878|Plscr4|235527|phospholipid scramblase 4
mm9_v1_chr6_-_37391993_37392195	0.220339	HNF4A_NR2F1,2.p2	BC138470|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	BC138471|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	BC043466|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK041050|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK035695|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK036712|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK042418|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	AK041669|Creb3l2|208647|cAMP responsive element binding protein 3-like 2	NM_178661|Creb3l2|208647|cAMP responsive element binding protein 3-like 2
mm9_v1_chr12_+_3960002_3960129	0.220218	HNF4A_NR2F1,2.p2	M30489|Pomc|18976|pro-opiomelanocortin-alpha
mm9_v1_chr18_-_66451420_66451491	0.220089	HNF4A_NR2F1,2.p2	AK039742|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC103803|Ccbe1|320924|collagen and calcium binding EGF domains 1	BC152322|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK220435|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK035153|Ccbe1|320924|collagen and calcium binding EGF domains 1	AK028377|Ccbe1|320924|collagen and calcium binding EGF domains 1	NM_178793|Ccbe1|320924|collagen and calcium binding EGF domains 1
mm9_v1_chr17_-_28623006_28623098	0.220043	HNF4A_NR2F1,2.p2	U36220|Fkbp5|14229|FK506 binding protein 5	BC015260|Fkbp5|14229|FK506 binding protein 5	AK169795|Fkbp5|14229|FK506 binding protein 5	NM_010220|Fkbp5|14229|FK506 binding protein 5	U16959|Fkbp5|14229|FK506 binding protein 5
mm9_v1_chr3_+_137527448_137527565	0.219849	HNF4A_NR2F1,2.p2	AK088704|H2afz|51788|H2A histone family, member Z	AK146181|H2afz|51788|H2A histone family, member Z	BC079903|H2afz|51788|H2A histone family, member Z	AK143572|H2afz|51788|H2A histone family, member Z	AK151052|H2afz|51788|H2A histone family, member Z	AK151509|H2afz|51788|H2A histone family, member Z	AK152848|H2afz|51788|H2A histone family, member Z	AK168178|H2afz|51788|H2A histone family, member Z	AK169003|H2afz|51788|H2A histone family, member Z	AY074806|H2afz|51788|H2A histone family, member Z	AK028176|H2afz|51788|H2A histone family, member Z	AK150454|H2afz|51788|H2A histone family, member Z	AK151462|H2afz|51788|H2A histone family, member Z	AK151868|H2afz|51788|H2A histone family, member Z	AK152398|H2afz|51788|H2A histone family, member Z	NM_016750|H2afz|51788|H2A histone family, member Z	U70494|H2afz|51788|H2A histone family, member Z	AK212062|H2afz|51788|H2A histone family, member Z
mm9_v1_chr17_+_56812647_56812679	0.219407	HNF4A_NR2F1,2.p2	NM_027933|Ranbp3|71810|RAN binding protein 3
mm9_v1_chr1_-_75121765_75121817	0.218771	HNF4A_NR2F1,2.p2	BC006063|Nhej1|75570|nonhomologous end-joining factor 1	AK006481|Nhej1|75570|nonhomologous end-joining factor 1	NM_029342|Nhej1|75570|nonhomologous end-joining factor 1
mm9_v1_chr10_-_67375130_67375267	0.218584	HNF4A_NR2F1,2.p2	AF543761|Zfp365|216049|zinc finger protein 365	AK044322|Zfp365|216049|zinc finger protein 365	AK033892|Zfp365|216049|zinc finger protein 365	AK077316|Zfp365|216049|zinc finger protein 365	AK031846|Zfp365|216049|zinc finger protein 365	BC157983|Zfp365|216049|zinc finger protein 365	BC157991|Zfp365|216049|zinc finger protein 365	AJ516033|Zfp365|216049|zinc finger protein 365
mm9_v1_chr15_+_44450689_44451235	0.218557	HNF4A_NR2F1,2.p2	BC026717|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AK160149|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AK159499|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AY009091|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC108397|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	NM_019480|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC119118|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC119120|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC144740|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9
mm9_v1_chr9_+_80012837_80012863	0.21829	HNF4A_NR2F1,2.p2	NM_001039546|Myo6|17920|myosin VI	AK053882|Myo6|17920|myosin VI
mm9_v1_chr19_-_46114019_46114148	0.216598	HNF4A_NR2F1,2.p2	NM_010697|Ldb1|16825|LIM domain binding 1	U69270|Ldb1|16825|LIM domain binding 1
mm9_v1_chr4_-_21694265_21694282	0.216344	HNF4A_NR2F1,2.p2	AK011611|2610029I01Rik|77032|RIKEN cDNA 2610029I01 gene
mm9_v1_chr19_-_17431079_17431156	0.216124	HNF4A_NR2F1,2.p2	BC039126|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK199888|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK045216|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	AK167048|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	D87333|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2	NM_173442|Gcnt1|14537|glucosaminyl (N-acetyl) transferase 1, core 2
mm9_v1_chr6_+_108610606_108610702	0.215966	HNF4A_NR2F1,2.p2	AK048242|Bhlhe40|20893|basic helix-loop-helix family, member e40	NM_011498|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK154935|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK090032|Bhlhe40|20893|basic helix-loop-helix family, member e40	BC010720|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF010305|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF364051|Bhlhe40|20893|basic helix-loop-helix family, member e40
mm9_v1_chr2_+_166631011_166631132	0.215648	HNF4A_NR2F1,2.p2	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chrX_-_7544940_7545019	0.215556	HNF4A_NR2F1,2.p2	NM_008089|Gata1|14460|GATA binding protein 1	X15763|Gata1|14460|GATA binding protein 1	BC052653|Gata1|14460|GATA binding protein 1	AK146915|Gata1|14460|GATA binding protein 1
mm9_v1_chr4_-_126427788_126428041	0.215389	HNF4A_NR2F1,2.p2	AK216583|Ncdn|26562|neurochondrin	AK122327|Ncdn|26562|neurochondrin
mm9_v1_chr7_+_57014466_57014562	0.214685	HNF4A_NR2F1,2.p2	NM_001146049|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	NM_001146050|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	NM_001146053|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	NM_016865|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	AK015389|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	AK144837|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	BC004083|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	AK146400|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	AK151254|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)	AK152418|Htatip2|53415|HIV-1 tat interactive protein 2, homolog (human)
mm9_v1_chr1_+_137029275_137029304	0.214517	HNF4A_NR2F1,2.p2	AK083305|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7	NM_177081|Ptpn7|320139|protein tyrosine phosphatase, non-receptor type 7
mm9_v1_chr3_+_58329742_58329982	0.214216	HNF4A_NR2F1,2.p2	NM_001005509|Eif2a|229317|eukaryotic translation initiation factor 2A	AK145275|Eif2a|229317|eukaryotic translation initiation factor 2A	BC082557|Eif2a|229317|eukaryotic translation initiation factor 2A	AK161904|Eif2a|229317|eukaryotic translation initiation factor 2A	AK050971|Eif2a|229317|eukaryotic translation initiation factor 2A	AK078519|Eif2a|229317|eukaryotic translation initiation factor 2A	BC030447|Eif2a|229317|eukaryotic translation initiation factor 2A
mm9_v1_chr2_+_162760216_162760271	0.214004	HNF4A_NR2F1,2.p2	BC029312|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr7_-_27981077_27981289	0.213978	HNF4A_NR2F1,2.p2	L15447|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC096648|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK088550|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC094006|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK049541|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	BC003229|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	AK013886|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A	NM_015782|Snrpa|53607|small nuclear ribonucleoprotein polypeptide A
mm9_v1_chr7_+_19609725_19609766	0.213959	HNF4A_NR2F1,2.p2	AK155093|Sympk|68188|symplekin	NM_026605|Sympk|68188|symplekin	AK146894|Sympk|68188|symplekin	AK168541|Sympk|68188|symplekin	AK168757|Sympk|68188|symplekin	AK165591|Sympk|68188|symplekin
mm9_v1_chr13_+_49282844_49282955	0.213917	HNF4A_NR2F1,2.p2	AK159111|Ninj1|18081|ninjurin 1	AK077602|Ninj1|18081|ninjurin 1	AK171973|Ninj1|18081|ninjurin 1	AK160045|Ninj1|18081|ninjurin 1	AK155741|Ninj1|18081|ninjurin 1	BC118937|Ninj1|18081|ninjurin 1	NM_013610|Ninj1|18081|ninjurin 1	U91513|Ninj1|18081|ninjurin 1	BC049600|Ninj1|18081|ninjurin 1
mm9_v1_chr7_+_117161896_117161938	0.213864	HNF4A_NR2F1,2.p2	AY316153|Ipo7|233726|importin 7	NM_181517|Ipo7|233726|importin 7
mm9_v1_chr16_+_35022507_35022577	0.213626	HNF4A_NR2F1,2.p2	AF169286|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	BC131899|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	BC131901|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	AK148143|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	BC027289|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b	AK018144|Ptplb|70757|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b
mm9_v1_chr19_-_7315495_7315711	0.213543	HNF4A_NR2F1,2.p2	AK202154|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK035418|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033510|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK170548|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK033896|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK089209|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK162625|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	BC020020|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	AK016504|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)	NM_027643|Naa40|70999|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm9_v1_chr10_-_80170648_80170694	0.213481	HNF4A_NR2F1,2.p2	
mm9_v1_chr17_-_56706382_56706445	0.212871	HNF4A_NR2F1,2.p2	BC027837|Safb2|224902|scaffold attachment factor B2
mm9_v1_chr2_+_58607580_58607600	0.212826	HNF4A_NR2F1,2.p2	AY152393|Upp2|76654|uridine phosphorylase 2	NM_029692|Upp2|76654|uridine phosphorylase 2	AK149444|Upp2|76654|uridine phosphorylase 2
mm9_v1_chr7_+_3303770_3303847	0.21248	HNF4A_NR2F1,2.p2	BC111807|Prkcc|18752|protein kinase C, gamma	X67129|Prkcc|18752|protein kinase C, gamma
mm9_v1_chr19_+_29064938_29065019	0.211731	HNF4A_NR2F1,2.p2	AK078872|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK161465|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK018787|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK080238|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK012312|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	NM_025950|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	BC031761|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK038578|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1	AK079556|Cdc37l1|67072|cell division cycle 37 homolog (S. cerevisiae)-like 1
mm9_v1_chr2_-_25110892_25110940	0.211703	HNF4A_NR2F1,2.p2	BC049789|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK163207|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK143124|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK169885|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	AK019617|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1	NM_001082476|Ndor1|78797|NADPH dependent diflavin oxidoreductase 1
mm9_v1_chr17_+_35998262_35998322	0.21139	HNF4A_NR2F1,2.p2	BC021750|Nrm|106582|nurim (nuclear envelope membrane protein)	NM_134122|Nrm|106582|nurim (nuclear envelope membrane protein)	BC026576|Nrm|106582|nurim (nuclear envelope membrane protein)
mm9_v1_chrX_+_132781054_132781063	0.211042	HNF4A_NR2F1,2.p2	AK213578|Wbp5|22381|WW domain binding protein 5
mm9_v1_chr9_+_106124928_106124996	0.211009	HNF4A_NR2F1,2.p2	AB045181|Tlr9|81897|toll-like receptor 9	NM_031178|Tlr9|81897|toll-like receptor 9	AF314224|Tlr9|81897|toll-like receptor 9	AF348140|Tlr9|81897|toll-like receptor 9
mm9_v1_chr2_-_92232731_92232888	0.21028	HNF4A_NR2F1,2.p2	BC072578|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK147033|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK053819|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr3_+_137004089_137004128	0.210114	HNF4A_NR2F1,2.p2	AB034693|Emcn|59308|endomucin	AF060883|Emcn|59308|endomucin	AK164422|Emcn|59308|endomucin
mm9_v1_chr7_+_116081258_116081309	0.209776	HNF4A_NR2F1,2.p2	AK217928|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F	AK192917|Eif3f|66085|eukaryotic translation initiation factor 3, subunit F
mm9_v1_chr1_-_171899278_171899299	0.209415	HNF4A_NR2F1,2.p2	AK028380|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	AK050211|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7	BC011464|Hsd17b7|15490|hydroxysteroid (17-beta) dehydrogenase 7
mm9_v1_chr7_+_31076852_31076943	0.209337	HNF4A_NR2F1,2.p2	BC138413|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr16_-_31274947_31275377	0.208958	HNF4A_NR2F1,2.p2	AK015349|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK053657|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069886|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK002671|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK032462|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK028603|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	BC069885|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	AK150281|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2	NM_025800|Ppp1r2|66849|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm9_v1_chr10_-_127058163_127058193	0.208908	HNF4A_NR2F1,2.p2	AF367720|Lrp1|16971|low density lipoprotein receptor-related protein 1	X67469|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr6_+_48543879_48544012	0.208887	HNF4A_NR2F1,2.p2	NM_001079901|Repin1|58887|replication initiator 1	NM_001079902|Repin1|58887|replication initiator 1	NM_001079903|Repin1|58887|replication initiator 1	NM_001079904|Repin1|58887|replication initiator 1	NM_001079905|Repin1|58887|replication initiator 1	NM_175099|Repin1|58887|replication initiator 1	AK170797|Repin1|58887|replication initiator 1	BC092301|Repin1|58887|replication initiator 1	AK089041|Repin1|58887|replication initiator 1	AK137310|Repin1|58887|replication initiator 1	BC085128|Repin1|58887|replication initiator 1
mm9_v1_chr16_+_35541447_35541447	0.20888	HNF4A_NR2F1,2.p2	BC052397|Sema5b|20357|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	NM_013661|Sema5b|20357|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
mm9_v1_chr9_-_44187378_44187532	0.208058	HNF4A_NR2F1,2.p2	AK020500|9430081H08Rik|77430|RIKEN cDNA 9430081H08 gene	AK040656|9430081H08Rik|77430|RIKEN cDNA 9430081H08 gene
mm9_v1_chr6_-_124492297_124492394	0.206443	HNF4A_NR2F1,2.p2	BC022123|C1s|50908|complement component 1, s subcomponent	BC018319|C1s|50908|complement component 1, s subcomponent	NM_144938|C1s|50908|complement component 1, s subcomponent	AK087522|C1s|50908|complement component 1, s subcomponent	AF459019|C1s|50908|complement component 1, s subcomponent	AK172453|C1s|50908|complement component 1, s subcomponent	NM_001097617|C1s|50908|complement component 1, s subcomponent
mm9_v1_chr3_-_107261815_107261829	0.205308	HNF4A_NR2F1,2.p2	BC024837|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4	NM_145922|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4
mm9_v1_chr2_+_92215395_92215518	0.205134	HNF4A_NR2F1,2.p2	AK143073|Pex16|18633|peroxisomal biogenesis factor 16	NM_145122|Pex16|18633|peroxisomal biogenesis factor 16
mm9_v1_chr3_+_28981477_28981498	0.204885	HNF4A_NR2F1,2.p2	AK018073|Egfem1|75740|EGF-like and EMI domain containing 1	NM_001167748|Egfem1|75740|EGF-like and EMI domain containing 1	NM_029412|Egfem1|75740|EGF-like and EMI domain containing 1
mm9_v1_chr4_+_48552806_48552952	0.204557	HNF4A_NR2F1,2.p2	AK075956|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145925|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK017795|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	AK011381|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene	NM_001145924|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr4_+_147976641_147976774	0.204555	HNF4A_NR2F1,2.p2	NM_001003893|Masp2|17175|mannan-binding lectin serine peptidase 2	NM_010767|Masp2|17175|mannan-binding lectin serine peptidase 2	AJ250369|Masp2|17175|mannan-binding lectin serine peptidase 2	AK050052|Masp2|17175|mannan-binding lectin serine peptidase 2	AK149421|Masp2|17175|mannan-binding lectin serine peptidase 2	Y19160|Masp2|17175|mannan-binding lectin serine peptidase 2	Y19163|Masp2|17175|mannan-binding lectin serine peptidase 2	BC013893|Masp2|17175|mannan-binding lectin serine peptidase 2
mm9_v1_chr7_+_17428258_17428362	0.204439	HNF4A_NR2F1,2.p2	AK170236|Prkd2|101540|protein kinase D2	BC096444|Prkd2|101540|protein kinase D2	AK170761|Prkd2|101540|protein kinase D2	BC095949|Prkd2|101540|protein kinase D2
mm9_v1_chr10_+_77068939_77069034	0.204388	HNF4A_NR2F1,2.p2	AK012742|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150063|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK150200|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK162035|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK160169|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK013019|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK148306|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK168988|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	NM_019929|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AK167207|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	AF063847|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115488|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)	BC115489|Sumo3|20610|SMT3 suppressor of mif two 3 homolog 3 (yeast)
mm9_v1_chr6_-_148893155_148893361	0.203868	HNF4A_NR2F1,2.p2	AK046519|Fam60a|56306|family with sequence similarity 60, member A
mm9_v1_chr1_+_99666744_99666792	0.202874	HNF4A_NR2F1,2.p2	AK014287|Gin1|252876|gypsy retrotransposon integrase 1	AK018404|Gin1|252876|gypsy retrotransposon integrase 1	NM_026250|Gin1|252876|gypsy retrotransposon integrase 1	AK090002|Gin1|252876|gypsy retrotransposon integrase 1	AK015243|Gin1|252876|gypsy retrotransposon integrase 1	AK169361|Gin1|252876|gypsy retrotransposon integrase 1
mm9_v1_chrX_+_45461901_45462257	0.202018	HNF4A_NR2F1,2.p2	AK172086|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	NM_133213|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF428102|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK164538|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK078835|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK087627|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK085520|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF367247|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	BC140977|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
mm9_v1_chr2_+_131763454_131763725	0.201924	HNF4A_NR2F1,2.p2	AK215651|Prnp|19122|prion protein	AK205534|Prnp|19122|prion protein	AK213884|Prnp|19122|prion protein	AK206219|Prnp|19122|prion protein
mm9_v1_chr8_-_125760103_125760155	0.201904	HNF4A_NR2F1,2.p2	AK220503|Spata2L|78779|spermatogenesis associated 2-like	AK170267|Spata2L|78779|spermatogenesis associated 2-like	AK139339|Spata2L|78779|spermatogenesis associated 2-like	AK081234|Spata2L|78779|spermatogenesis associated 2-like	NM_030176|Spata2L|78779|spermatogenesis associated 2-like	AK019166|Spata2L|78779|spermatogenesis associated 2-like
mm9_v1_chr2_+_118993521_118993566	0.201417	HNF4A_NR2F1,2.p2	AK028116|Gchfr|320415|GTP cyclohydrolase I feedback regulator	AK028122|Gchfr|320415|GTP cyclohydrolase I feedback regulator	NM_177157|Gchfr|320415|GTP cyclohydrolase I feedback regulator	BC132450|Gchfr|320415|GTP cyclohydrolase I feedback regulator	BC132478|Gchfr|320415|GTP cyclohydrolase I feedback regulator	BC096406|Gchfr|320415|GTP cyclohydrolase I feedback regulator
mm9_v1_chr7_-_28122694_28122710	0.200896	HNF4A_NR2F1,2.p2	AF410798|Ltbp4|108075|latent transforming growth factor beta binding protein 4
mm9_v1_chr2_-_117168600_117168658	0.200523	HNF4A_NR2F1,2.p2	BC057120|Rasgrp1|19419|RAS guanyl releasing protein 1	BC057341|Rasgrp1|19419|RAS guanyl releasing protein 1	NM_011246|Rasgrp1|19419|RAS guanyl releasing protein 1	AK134005|Rasgrp1|19419|RAS guanyl releasing protein 1	AK013548|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr4_-_154273134_154273221	0.199903	HNF4A_NR2F1,2.p2	BC030453|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene	AK005188|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene	AK012999|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene	NM_025582|2810405K02Rik|66469|RIKEN cDNA 2810405K02 gene
mm9_v1_chr12_+_85626260_85626364	0.199146	HNF4A_NR2F1,2.p2	NM_029880|Ptgr2|77219|prostaglandin reductase 2	BC021466|Ptgr2|77219|prostaglandin reductase 2	AK040396|Ptgr2|77219|prostaglandin reductase 2	AK020666|Ptgr2|77219|prostaglandin reductase 2	AK036168|Ptgr2|77219|prostaglandin reductase 2	AK041027|Ptgr2|77219|prostaglandin reductase 2	AK033693|Ptgr2|77219|prostaglandin reductase 2	AK159187|Ptgr2|77219|prostaglandin reductase 2	AK159932|Ptgr2|77219|prostaglandin reductase 2	AK021033|Ptgr2|77219|prostaglandin reductase 2	AK145232|Ptgr2|77219|prostaglandin reductase 2	AK168895|Ptgr2|77219|prostaglandin reductase 2	AK007522|Ptgr2|77219|prostaglandin reductase 2
mm9_v1_chr2_-_48804672_48804789	0.198293	HNF4A_NR2F1,2.p2	BC019748|Orc4|26428|origin recognition complex, subunit 4	BC015072|Orc4|26428|origin recognition complex, subunit 4	AJ003140|Orc4|26428|origin recognition complex, subunit 4	AK011550|Orc4|26428|origin recognition complex, subunit 4	AK012669|Orc4|26428|origin recognition complex, subunit 4	AK049534|Orc4|26428|origin recognition complex, subunit 4	AK084326|Orc4|26428|origin recognition complex, subunit 4	AK010258|Orc4|26428|origin recognition complex, subunit 4	AK169291|Orc4|26428|origin recognition complex, subunit 4	AK076324|Orc4|26428|origin recognition complex, subunit 4	NM_001177313|Orc4|26428|origin recognition complex, subunit 4	NM_011958|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr9_+_107949197_107949310	0.198119	HNF4A_NR2F1,2.p2	
mm9_v1_chr5_+_97222355_97222536	0.197571	HNF4A_NR2F1,2.p2	AK150922|Anxa3|11745|annexin A3	NM_013470|Anxa3|11745|annexin A3	BC090634|Anxa3|11745|annexin A3	AK152863|Anxa3|11745|annexin A3	AJ001633|Anxa3|11745|annexin A3	AK150951|Anxa3|11745|annexin A3	AK166389|Anxa3|11745|annexin A3	AK151771|Anxa3|11745|annexin A3	BC141167|Anxa3|11745|annexin A3	AK168507|Anxa3|11745|annexin A3	AK152837|Anxa3|11745|annexin A3	AK168396|Anxa3|11745|annexin A3	AK169423|Anxa3|11745|annexin A3	AK169113|Anxa3|11745|annexin A3
mm9_v1_chr4_-_43512476_43512545	0.19755	HNF4A_NR2F1,2.p2	AK087493|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	BC080700|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	AK153880|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene	NM_001013377|E130306D19Rik|230098|RIKEN cDNA E130306D19 gene
mm9_v1_chrX_-_159326220_159326424	0.197493	HNF4A_NR2F1,2.p2	BC021373|Syap1|67043|synapse associated protein 1	AK147055|Syap1|67043|synapse associated protein 1	AK154843|Syap1|67043|synapse associated protein 1	AK051251|Syap1|67043|synapse associated protein 1	AK161413|Syap1|67043|synapse associated protein 1	AK008390|Syap1|67043|synapse associated protein 1	AK014893|Syap1|67043|synapse associated protein 1	AK011337|Syap1|67043|synapse associated protein 1	NM_025932|Syap1|67043|synapse associated protein 1
mm9_v1_chr6_+_29222664_29222676	0.197182	HNF4A_NR2F1,2.p2	AK144676|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene	AK009377|2310016C08Rik|69573|RIKEN cDNA 2310016C08 gene
mm9_v1_chr2_-_118375365_118375421	0.19694	HNF4A_NR2F1,2.p2	AK040622|Bmf|171543|BCL2 modifying factor	AK169903|Bmf|171543|BCL2 modifying factor	NM_138313|Bmf|171543|BCL2 modifying factor	AK084658|Bmf|171543|BCL2 modifying factor
mm9_v1_chr9_+_56712829_56712839	0.196516	HNF4A_NR2F1,2.p2	AK052394|Cspg4|121021|chondroitin sulfate proteoglycan 4
mm9_v1_chr9_-_121766670_121766748	0.196492	HNF4A_NR2F1,2.p2	AY028386|Higd1a|56295|HIG1 domain family, member 1A	BC090259|Higd1a|56295|HIG1 domain family, member 1A	BC132371|Higd1a|56295|HIG1 domain family, member 1A	BC151191|Higd1a|56295|HIG1 domain family, member 1A	AK008756|Higd1a|56295|HIG1 domain family, member 1A	AK004166|Higd1a|56295|HIG1 domain family, member 1A	AK018360|Higd1a|56295|HIG1 domain family, member 1A
mm9_v1_chr2_+_4480799_4480871	0.196039	HNF4A_NR2F1,2.p2	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr9_+_66006060_66006077	0.195213	HNF4A_NR2F1,2.p2	AK004350|Dapk2|13143|death-associated protein kinase 2	BC022165|Dapk2|13143|death-associated protein kinase 2
mm9_v1_chr1_+_134212642_134212774	0.194499	HNF4A_NR2F1,2.p2	NM_001195025|Nuak2|74137|NUAK family, SNF1-like kinase, 2	NM_028778|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK034082|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK004737|Nuak2|74137|NUAK family, SNF1-like kinase, 2	AK033672|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC046833|Nuak2|74137|NUAK family, SNF1-like kinase, 2	BC033302|Nuak2|74137|NUAK family, SNF1-like kinase, 2
mm9_v1_chr13_+_63341348_63341411	0.194092	HNF4A_NR2F1,2.p2	AK167772|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	AK076298|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	BC006061|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	BC065422|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene	BC064132|2010111I01Rik|72061|RIKEN cDNA 2010111I01 gene
mm9_v1_chr2_-_180444750_180444774	0.19398	HNF4A_NR2F1,2.p2	AK051426|Dido1|23856|death inducer-obliterator 1
mm9_v1_chr19_+_42593255_42593331	0.193689	HNF4A_NR2F1,2.p2	AK082926|D19Ertd386e|52013|DNA segment, Chr 19, ERATO Doi 386, expressed	NM_177464|D19Ertd386e|52013|DNA segment, Chr 19, ERATO Doi 386, expressed	AK147893|D19Ertd386e|52013|DNA segment, Chr 19, ERATO Doi 386, expressed	BC038935|D19Ertd386e|52013|DNA segment, Chr 19, ERATO Doi 386, expressed
mm9_v1_chr14_+_55050530_55050726	0.193516	HNF4A_NR2F1,2.p2	X83536|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK149988|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	DQ249870|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)	AK198018|Mmp14|17387|matrix metallopeptidase 14 (membrane-inserted)
mm9_v1_chr4_+_97444494_97444517	0.19279	HNF4A_NR2F1,2.p2	AK052204|Nfia|18027|nuclear factor I/A
mm9_v1_chr6_+_87852230_87852326	0.192633	HNF4A_NR2F1,2.p2	AK193696|Copg|54161|coatomer protein complex, subunit gamma	AK194411|Copg|54161|coatomer protein complex, subunit gamma	AK195632|Copg|54161|coatomer protein complex, subunit gamma	AK197699|Copg|54161|coatomer protein complex, subunit gamma	AK201780|Copg|54161|coatomer protein complex, subunit gamma	AK204845|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr11_+_97524725_97524725	0.192552	HNF4A_NR2F1,2.p2	NM_139311|Mllt6|246198|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm9_v1_chr8_+_46035561_46035561	0.19251	HNF4A_NR2F1,2.p2	AJ250768|Fat1|14107|FAT tumor suppressor homolog 1 (Drosophila)	NM_001081286|Fat1|14107|FAT tumor suppressor homolog 1 (Drosophila)
mm9_v1_chr1_-_57463278_57463380	0.192403	HNF4A_NR2F1,2.p2	BC099495|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC058590|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC132289|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC144765|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	BC144766|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene	AK139666|1110034B05Rik|68736|RIKEN cDNA 1110034B05 gene
mm9_v1_chr15_+_73578771_73578842	0.1924	HNF4A_NR2F1,2.p2	AK143702|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK172192|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK014601|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr19_-_32182638_32182709	0.191621	HNF4A_NR2F1,2.p2	AB037111|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK080951|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK041937|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK047692|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK046540|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK166100|Asah2|54447|N-acylsphingosine amidohydrolase 2	AK034493|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr1_-_9738415_9738520	0.191548	HNF4A_NR2F1,2.p2	BC006059|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	AK030104|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	AK122563|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	BC059209|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	NM_173443|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1	AK144688|Vcpip1|70675|valosin containing protein (p97)/p47 complex interacting protein 1
mm9_v1_chr13_-_41923709_41923740	0.191424	HNF4A_NR2F1,2.p2	BC027755|9530008L14Rik|109254|RIKEN cDNA 9530008L14 gene
mm9_v1_chr9_+_55889639_55889686	0.19142	HNF4A_NR2F1,2.p2	AK041996|Rcn2|26611|reticulocalbin 2	NM_011992|Rcn2|26611|reticulocalbin 2	AF049125|Rcn2|26611|reticulocalbin 2	AK077486|Rcn2|26611|reticulocalbin 2	AK077734|Rcn2|26611|reticulocalbin 2	AK079156|Rcn2|26611|reticulocalbin 2	AK169765|Rcn2|26611|reticulocalbin 2	AK078106|Rcn2|26611|reticulocalbin 2	BC132320|Rcn2|26611|reticulocalbin 2	BC145668|Rcn2|26611|reticulocalbin 2
mm9_v1_chr12_+_83271002_83271165	0.191386	HNF4A_NR2F1,2.p2	NM_001167983|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	BC058681|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1	AK171876|Sipa1l1|217692|signal-induced proliferation-associated 1 like 1
mm9_v1_chr7_-_134986048_134986052	0.191236	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_+_19935558_19935623	0.191213	HNF4A_NR2F1,2.p2	AK050374|Ttpa|50500|tocopherol (alpha) transfer protein	BC099869|Ttpa|50500|tocopherol (alpha) transfer protein	BC099870|Ttpa|50500|tocopherol (alpha) transfer protein	BC099871|Ttpa|50500|tocopherol (alpha) transfer protein	NM_015767|Ttpa|50500|tocopherol (alpha) transfer protein	BC099868|Ttpa|50500|tocopherol (alpha) transfer protein	AF218416|Ttpa|50500|tocopherol (alpha) transfer protein	AK004882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr19_+_4594318_4594387	0.190946	HNF4A_NR2F1,2.p2	NM_008797|Pcx|18563|pyruvate carboxylase	L09192|Pcx|18563|pyruvate carboxylase
mm9_v1_chr8_+_62984911_62984927	0.190753	HNF4A_NR2F1,2.p2	AK075578|Aadat|23923|aminoadipate aminotransferase	AF072376|Aadat|23923|aminoadipate aminotransferase	NM_011834|Aadat|23923|aminoadipate aminotransferase	BC012637|Aadat|23923|aminoadipate aminotransferase
mm9_v1_chr1_+_135027742_135027959	0.190719	HNF4A_NR2F1,2.p2	NM_133819|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK082957|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK170862|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK167565|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC006897|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC058078|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm9_v1_chr5_-_148133915_148134021	0.190549	HNF4A_NR2F1,2.p2	DQ225767|Prhoxnb|231903|parahox cluster neighbor	BC147779|Prhoxnb|231903|parahox cluster neighbor	BC147790|Prhoxnb|231903|parahox cluster neighbor	NM_001039678|Prhoxnb|231903|parahox cluster neighbor
mm9_v1_chr10_+_59754384_59754499	0.190458	HNF4A_NR2F1,2.p2	AK159622|Psap|19156|prosaposin	AK210181|Psap|19156|prosaposin	BC036266|Psap|19156|prosaposin	AK180106|Psap|19156|prosaposin	AK194829|Psap|19156|prosaposin	AK197804|Psap|19156|prosaposin	AK201095|Psap|19156|prosaposin	AK203509|Psap|19156|prosaposin
mm9_v1_chr14_+_47451869_47451942	0.190444	HNF4A_NR2F1,2.p2	AK004156|Cgrrf1|68755|cell growth regulator with ring finger domain 1	AK007402|Cgrrf1|68755|cell growth regulator with ring finger domain 1	BC037677|Cgrrf1|68755|cell growth regulator with ring finger domain 1	AK030403|Cgrrf1|68755|cell growth regulator with ring finger domain 1	AK030755|Cgrrf1|68755|cell growth regulator with ring finger domain 1	NM_026832|Cgrrf1|68755|cell growth regulator with ring finger domain 1
mm9_v1_chr19_+_6047024_6047144	0.190389	HNF4A_NR2F1,2.p2	BC080722|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK143720|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK172097|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	BC042199|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	AK004688|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	BC046829|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin	NM_001164709|Syvn1|74126|synovial apoptosis inhibitor 1, synoviolin
mm9_v1_chr2_+_153035426_153035671	0.190265	HNF4A_NR2F1,2.p2	AK194607|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK208683|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr4_+_132194931_132195032	0.189604	HNF4A_NR2F1,2.p2	AK164591|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_210071|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_211357|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK144653|Eya3|14050|eyes absent 3 homolog (Drosophila)	NM_010166|Eya3|14050|eyes absent 3 homolog (Drosophila)	BC052860|Eya3|14050|eyes absent 3 homolog (Drosophila)	U81604|Eya3|14050|eyes absent 3 homolog (Drosophila)	AK017913|5830409B07Rik|76020|RIKEN cDNA 5830409B07 gene	BC063259|Eya3|14050|eyes absent 3 homolog (Drosophila)
mm9_v1_chr8_+_109034784_109034845	0.189497	HNF4A_NR2F1,2.p2	AK045041|Cdh3|12560|cadherin 3	AK164577|Cdh3|12560|cadherin 3	NM_007665|Cdh3|12560|cadherin 3	AK031265|Cdh3|12560|cadherin 3	NM_001037809|Cdh3|12560|cadherin 3	X06340|Cdh3|12560|cadherin 3	BC098459|Cdh3|12560|cadherin 3
mm9_v1_chr7_+_26682681_26682715	0.189159	HNF4A_NR2F1,2.p2	BC060973|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	NM_009999|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	AF128849|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	M21856|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10	X99715|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10
mm9_v1_chr5_-_31999977_32000001	0.188879	HNF4A_NR2F1,2.p2	BC023339|Rbks|71336|ribokinase	NM_153196|Rbks|71336|ribokinase	AK017229|Rbks|71336|ribokinase	AK138939|Rbks|71336|ribokinase
mm9_v1_chr17_+_28828286_28828455	0.187761	HNF4A_NR2F1,2.p2	BC012235|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168508|Mapk14|26416|mitogen-activated protein kinase 14	NM_001168514|Mapk14|26416|mitogen-activated protein kinase 14	NM_011951|Mapk14|26416|mitogen-activated protein kinase 14	BC085303|Mapk14|26416|mitogen-activated protein kinase 14	AK089059|Mapk14|26416|mitogen-activated protein kinase 14	AK133684|Mapk14|26416|mitogen-activated protein kinase 14	AF128892|Mapk14|26416|mitogen-activated protein kinase 14	BC018227|Mapk14|26416|mitogen-activated protein kinase 14	U10871|Mapk14|26416|mitogen-activated protein kinase 14	D83073|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr8_-_72758275_72758364	0.187689	HNF4A_NR2F1,2.p2	BC048396|Armc6|76813|armadillo repeat containing 6	BC043070|Armc6|76813|armadillo repeat containing 6	BC055779|Armc6|76813|armadillo repeat containing 6	NM_133972|Armc6|76813|armadillo repeat containing 6	AK010815|Armc6|76813|armadillo repeat containing 6	AK081550|Armc6|76813|armadillo repeat containing 6
mm9_v1_chr8_+_122434697_122434814	0.18757	HNF4A_NR2F1,2.p2	AK077453|Usp10|22224|ubiquitin specific peptidase 10	AK157970|Usp10|22224|ubiquitin specific peptidase 10	AK165156|Usp10|22224|ubiquitin specific peptidase 10	AK172443|Usp10|22224|ubiquitin specific peptidase 10	AK137015|Usp10|22224|ubiquitin specific peptidase 10	AK166243|Usp10|22224|ubiquitin specific peptidase 10	AK129083|Usp10|22224|ubiquitin specific peptidase 10	BC007134|Usp10|22224|ubiquitin specific peptidase 10	D84096|Usp10|22224|ubiquitin specific peptidase 10	NM_009462|Usp10|22224|ubiquitin specific peptidase 10	AK179830|Usp10|22224|ubiquitin specific peptidase 10
mm9_v1_chr1_+_182571464_182571502	0.187556	HNF4A_NR2F1,2.p2	AF190325|Lin9|72568|lin-9 homolog (C. elegans)	NM_001103182|Lin9|72568|lin-9 homolog (C. elegans)	NM_175186|Lin9|72568|lin-9 homolog (C. elegans)	AK052618|Lin9|72568|lin-9 homolog (C. elegans)	BC088992|Lin9|72568|lin-9 homolog (C. elegans)	BC099695|Lin9|72568|lin-9 homolog (C. elegans)	AK042357|Lin9|72568|lin-9 homolog (C. elegans)
mm9_v1_chr11_-_115940157_115940300	0.187544	HNF4A_NR2F1,2.p2	
mm9_v1_chr6_+_17231334_17231388	0.187357	HNF4A_NR2F1,2.p2	BC023095|Cav2|12390|caveolin 2	NM_016900|Cav2|12390|caveolin 2	AK009913|Cav2|12390|caveolin 2
mm9_v1_chr17_-_25922267_25922279	0.186876	HNF4A_NR2F1,2.p2	AK005274|Haghl|68977|hydroxyacylglutathione hydrolase-like	NM_026897|Haghl|68977|hydroxyacylglutathione hydrolase-like	AK079632|Haghl|68977|hydroxyacylglutathione hydrolase-like
mm9_v1_chr18_+_35758269_35758376	0.186818	HNF4A_NR2F1,2.p2	AK146327|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK167545|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169207|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK169411|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK154453|Paip2|67869|polyadenylate-binding protein-interacting protein 2	BC010190|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK150957|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK005462|Paip2|67869|polyadenylate-binding protein-interacting protein 2	AK009909|Paip2|67869|polyadenylate-binding protein-interacting protein 2	NM_026420|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr19_+_6276685_6276733	0.186626	HNF4A_NR2F1,2.p2	AK088980|Ehd1|13660|EH-domain containing 1	AK172669|Ehd1|13660|EH-domain containing 1
mm9_v1_chr9_-_26837597_26837631	0.186457	HNF4A_NR2F1,2.p2	AK150929|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	BC052721|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	BC062972|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK010160|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK165539|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)	AK035321|Vps26b|69091|vacuolar protein sorting 26 homolog B (yeast)
mm9_v1_chr8_+_114060659_114060939	0.186151	HNF4A_NR2F1,2.p2	BC086770|Znrf1|170737|zinc and ring finger 1	AF378525|Znrf1|170737|zinc and ring finger 1	BC006765|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr12_-_105011767_105011793	0.185889	HNF4A_NR2F1,2.p2	M75718|Serpina1d|20703|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm9_v1_chr1_+_192752686_192752753	0.185734	HNF4A_NR2F1,2.p2	AK012003|Angel2|52477|angel homolog 2 (Drosophila)	AK088834|Angel2|52477|angel homolog 2 (Drosophila)
mm9_v1_chr13_-_35085948_35086012	0.185612	HNF4A_NR2F1,2.p2	AF153613|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase	AK170778|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase	AK009478|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase	NM_011868|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase	NM_001110331|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase	NM_001110332|Peci|23986|peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase
mm9_v1_chr12_+_4082573_4082658	0.185377	HNF4A_NR2F1,2.p2	NM_153082|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC051140|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	AK049300|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27	BC042643|Dnajc27|217378|DnaJ (Hsp40) homolog, subfamily C, member 27
mm9_v1_chr9_+_123429291_123429490	0.18486	HNF4A_NR2F1,2.p2	AK180316|Limd1|29806|LIM domains containing 1	AK212225|Limd1|29806|LIM domains containing 1	AK215267|Limd1|29806|LIM domains containing 1	AK215631|Limd1|29806|LIM domains containing 1	AK216846|Limd1|29806|LIM domains containing 1	AK220081|Limd1|29806|LIM domains containing 1	AK210611|Limd1|29806|LIM domains containing 1
mm9_v1_chr1_-_75176926_75176956	0.184649	HNF4A_NR2F1,2.p2	AK004605|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6	AK150853|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6	AK152584|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6	AK168642|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm9_v1_chr17_-_24781872_24781901	0.184644	HNF4A_NR2F1,2.p2	BC065778|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	AK002557|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	NM_023449|Slc9a3r2|65962|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm9_v1_chr7_-_3617056_3617101	0.184585	HNF4A_NR2F1,2.p2	AK005095|Leng1|69757|leukocyte receptor cluster (LRC) member 1	AK037634|Leng1|69757|leukocyte receptor cluster (LRC) member 1
mm9_v1_chr7_-_108986297_108986435	0.184317	HNF4A_NR2F1,2.p2	AK133359|Inppl1|16332|inositol polyphosphate phosphatase-like 1	AK149873|Inppl1|16332|inositol polyphosphate phosphatase-like 1	NM_001122739|Inppl1|16332|inositol polyphosphate phosphatase-like 1	BC063080|Inppl1|16332|inositol polyphosphate phosphatase-like 1
mm9_v1_chr11_-_70501586_70501625	0.183791	HNF4A_NR2F1,2.p2	NM_001190376|Camta2|216874|calmodulin binding transcription activator 2	NM_001190378|Camta2|216874|calmodulin binding transcription activator 2	NM_001190379|Camta2|216874|calmodulin binding transcription activator 2	NM_178116|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr7_+_28258771_28258858	0.183607	HNF4A_NR2F1,2.p2	AK134829|Sertad3|170742|SERTA domain containing 3	AF317202|Sertad3|170742|SERTA domain containing 3	BC034886|Sertad3|170742|SERTA domain containing 3	NM_133210|Sertad3|170742|SERTA domain containing 3
mm9_v1_chrX_+_8849905_8850039	0.182556	HNF4A_NR2F1,2.p2	AK007734|Xk|22439|Kell blood group precursor (McLeod phenotype) homolog	NM_023500|Xk|22439|Kell blood group precursor (McLeod phenotype) homolog	AY534248|Xk|22439|Kell blood group precursor (McLeod phenotype) homolog	BC125618|Xk|22439|Kell blood group precursor (McLeod phenotype) homolog	BC125620|Xk|22439|Kell blood group precursor (McLeod phenotype) homolog
mm9_v1_chr5_-_138362822_138362852	0.182255	HNF4A_NR2F1,2.p2	X63023|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	BC046592|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136494|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK136529|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	AK149572|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13	NM_007819|Cyp3a13|13113|cytochrome P450, family 3, subfamily a, polypeptide 13
mm9_v1_chr14_+_55082960_55083081	0.182229	HNF4A_NR2F1,2.p2	AK144035|Lrp10|65107|low-density lipoprotein receptor-related protein 10	NM_022993|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AK132169|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AK170325|Lrp10|65107|low-density lipoprotein receptor-related protein 10	BC052378|Lrp10|65107|low-density lipoprotein receptor-related protein 10	BC054447|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AB042200|Lrp10|65107|low-density lipoprotein receptor-related protein 10
mm9_v1_chr2_-_92227752_92227789	0.182092	HNF4A_NR2F1,2.p2	AK218579|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr6_-_48791369_48791407	0.181455	HNF4A_NR2F1,2.p2	AK156042|Tmem176b|65963|transmembrane protein 176B	NM_001164207|Tmem176b|65963|transmembrane protein 176B	NM_001164208|Tmem176b|65963|transmembrane protein 176B
mm9_v1_chr12_-_86682028_86682042	0.180966	HNF4A_NR2F1,2.p2	
mm9_v1_chr13_+_51503986_51504237	0.180914	HNF4A_NR2F1,2.p2	NM_010101|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK029852|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK030134|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK078443|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK084944|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK085180|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK087076|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK087139|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK028043|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK047268|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK081919|S1pr3|13610|sphingosine-1-phosphate receptor 3	BC064007|S1pr3|13610|sphingosine-1-phosphate receptor 3	BC068176|S1pr3|13610|sphingosine-1-phosphate receptor 3	AK083405|S1pr3|13610|sphingosine-1-phosphate receptor 3
mm9_v1_chr7_-_31348148_31348229	0.180537	HNF4A_NR2F1,2.p2	AK002440|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	AK007621|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	AK006284|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	BC024347|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	NM_025498|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	BC081443|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)
mm9_v1_chr19_-_46107484_46107619	0.179888	HNF4A_NR2F1,2.p2	AK210031|Ldb1|16825|LIM domain binding 1
mm9_v1_chr13_+_21454688_21454753	0.179888	HNF4A_NR2F1,2.p2	AK129138|Zscan12|22758|zinc finger and SCAN domain containing 12	NM_016684|Zscan12|22758|zinc finger and SCAN domain containing 12	AK075886|Zscan12|22758|zinc finger and SCAN domain containing 12	AK139837|Zscan12|22758|zinc finger and SCAN domain containing 12	AK142005|Zscan12|22758|zinc finger and SCAN domain containing 12	BC027041|Zscan12|22758|zinc finger and SCAN domain containing 12
mm9_v1_chr10_+_77044467_77044539	0.17987	HNF4A_NR2F1,2.p2	BC023961|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK088813|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK035696|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK098093|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK170971|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK167972|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK168164|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	BC032184|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	BC025533|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	NM_145925|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	BC029144|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK151639|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK152366|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK159987|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK170802|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK089887|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK170972|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK171140|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK075773|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein
mm9_v1_chr10_+_127759711_127759783	0.179417	HNF4A_NR2F1,2.p2	AK213625|Cnpy2|56530|canopy 2 homolog (zebrafish)	BC008261|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK007914|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK013568|Cnpy2|56530|canopy 2 homolog (zebrafish)	AK180663|Cnpy2|56530|canopy 2 homolog (zebrafish)
mm9_v1_chr11_-_75161767_75161884	0.179053	HNF4A_NR2F1,2.p2	AK177196|Rpa1|68275|replication protein A1	AK197958|Rpa1|68275|replication protein A1	AK203654|Rpa1|68275|replication protein A1	AK167598|Rpa1|68275|replication protein A1	AK150785|Rpa1|68275|replication protein A1	AK165316|Rpa1|68275|replication protein A1	BC019119|Rpa1|68275|replication protein A1	AK035084|Rpa1|68275|replication protein A1	AK152296|Rpa1|68275|replication protein A1	AK153107|Rpa1|68275|replication protein A1	AK165944|Rpa1|68275|replication protein A1	AK169599|Rpa1|68275|replication protein A1	AK148035|Rpa1|68275|replication protein A1	AK168400|Rpa1|68275|replication protein A1	AK151590|Rpa1|68275|replication protein A1	AK153144|Rpa1|68275|replication protein A1	NM_001164223|Rpa1|68275|replication protein A1	NM_026653|Rpa1|68275|replication protein A1
mm9_v1_chr16_-_22163035_22163154	0.179031	HNF4A_NR2F1,2.p2	AY531659|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2	AK077404|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2	BC023758|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2	AK049196|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2	BC054552|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2	AK159654|Igf2bp2|319765|insulin-like growth factor 2 mRNA binding protein 2
mm9_v1_chr17_+_39981964_39982030	0.179001	HNF4A_NR2F1,2.p2	
mm9_v1_chr16_-_17132372_17132480	0.178973	HNF4A_NR2F1,2.p2	AB043006|Sdf2l1|64136|stromal cell-derived factor 2-like 1	BC023290|Sdf2l1|64136|stromal cell-derived factor 2-like 1	BC053425|Sdf2l1|64136|stromal cell-derived factor 2-like 1	BC053438|Sdf2l1|64136|stromal cell-derived factor 2-like 1	NM_022324|Sdf2l1|64136|stromal cell-derived factor 2-like 1
mm9_v1_chr13_-_43655487_43655573	0.178961	HNF4A_NR2F1,2.p2	AK018089|Ccdc90a|76137|coiled-coil domain containing 90A	NM_001081059|Ccdc90a|76137|coiled-coil domain containing 90A	BC113195|Ccdc90a|76137|coiled-coil domain containing 90A	AK041849|Ccdc90a|76137|coiled-coil domain containing 90A
mm9_v1_chr8_+_48760744_48760757	0.178862	HNF4A_NR2F1,2.p2	AK083994|AA386476|546058|expressed sequence AA386476	AK140353|AA386476|546058|expressed sequence AA386476
mm9_v1_chr4_+_108132023_108132030	0.178576	HNF4A_NR2F1,2.p2	AK041821|Zcchc11|230594|zinc finger, CCHC domain containing 11	NM_175472|Zcchc11|230594|zinc finger, CCHC domain containing 11
mm9_v1_chr1_+_174628164_174628196	0.178486	HNF4A_NR2F1,2.p2	AK050392|Crp|12944|C-reactive protein, pentraxin-related	NM_007768|Crp|12944|C-reactive protein, pentraxin-related	X17496|Crp|12944|C-reactive protein, pentraxin-related	AK088477|Crp|12944|C-reactive protein, pentraxin-related	BC011124|Crp|12944|C-reactive protein, pentraxin-related
mm9_v1_chr9_-_50425561_50425568	0.178481	HNF4A_NR2F1,2.p2	NM_001134902|AU019823|270156|expressed sequence AU019823	NM_212449|AU019823|270156|expressed sequence AU019823
mm9_v1_chr7_+_116847191_116847288	0.178346	HNF4A_NR2F1,2.p2	AK163012|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	AK155010|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	AK086219|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	AK159903|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene	NM_020616|D930014E17Rik|57373|RIKEN cDNA D930014E17 gene
mm9_v1_chr8_-_95721654_95721683	0.178296	HNF4A_NR2F1,2.p2	AB023631|Ces1d|104158|carboxylesterase 1D	AF378751|Ces1d|104158|carboxylesterase 1D	AK078879|Ces1d|104158|carboxylesterase 1D
mm9_v1_chr2_-_173485027_173485050	0.178232	HNF4A_NR2F1,2.p2	AK161459|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK005746|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK029171|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK170078|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK046224|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene	AK164611|Ppp4r1l-ps|100043911|protein phosphatase 4, regulatory subunit 1-like, pseudogene
mm9_v1_chr17_-_80295336_80295462	0.178016	HNF4A_NR2F1,2.p2	AK135988|Atl2|56298|atlastin GTPase 2	BC060501|Atl2|56298|atlastin GTPase 2	NM_019717|Atl2|56298|atlastin GTPase 2	AK038697|Atl2|56298|atlastin GTPase 2	AK043907|Atl2|56298|atlastin GTPase 2	AK008381|Atl2|56298|atlastin GTPase 2	NM_178050|Atl2|56298|atlastin GTPase 2
mm9_v1_chr9_-_108551631_108551731	0.178006	HNF4A_NR2F1,2.p2	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr17_+_29456133_29456178	0.177446	HNF4A_NR2F1,2.p2	AK004672|Pi16|74116|peptidase inhibitor 16	BC106088|Pi16|74116|peptidase inhibitor 16	AB046537|Pi16|74116|peptidase inhibitor 16	BC118026|Pi16|74116|peptidase inhibitor 16
mm9_v1_chr5_-_34125322_34125413	0.17731	HNF4A_NR2F1,2.p2	BC023862|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AF061026|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061690|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	NM_019694|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC046326|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC055865|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AB041582|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061115|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AK133849|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr9_+_44448105_44448130	0.177213	HNF4A_NR2F1,2.p2	AK003265|Ddx6|13209|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
mm9_v1_chr19_-_4011251_4011428	0.176843	HNF4A_NR2F1,2.p2	AK189391|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK206448|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm9_v1_chr12_+_86311859_86311909	0.176578	HNF4A_NR2F1,2.p2	NM_028632|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC094619|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)	BC033045|Fcf1|73736|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)
mm9_v1_chr11_+_54128404_54128494	0.176044	HNF4A_NR2F1,2.p2	NM_001033599|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AY786360|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AY786362|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK032479|Acsl6|216739|acyl-CoA synthetase long-chain family member 6	AK039380|Acsl6|216739|acyl-CoA synthetase long-chain family member 6
mm9_v1_chr10_+_28749890_28749938	0.176022	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_129418930_129419057	0.175858	HNF4A_NR2F1,2.p2	NM_001177647|Sirpa|19261|signal-regulatory protein alpha	NM_007547|Sirpa|19261|signal-regulatory protein alpha	D87967|Sirpa|19261|signal-regulatory protein alpha	D87968|Sirpa|19261|signal-regulatory protein alpha	D85785|Sirpa|19261|signal-regulatory protein alpha
mm9_v1_chr18_-_36904178_36904211	0.175495	HNF4A_NR2F1,2.p2	BC006815|Ndufa2|17991|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	AF124786|Ndufa2|17991|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	AK003608|Ndufa2|17991|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	NM_010885|Ndufa2|17991|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2
mm9_v1_chr7_+_27904997_27905027	0.175026	HNF4A_NR2F1,2.p2	BC011089|Cyp2f2|13107|cytochrome P450, family 2, subfamily f, polypeptide 2	BC024742|Cyp2f2|13107|cytochrome P450, family 2, subfamily f, polypeptide 2
mm9_v1_chr6_-_87540727_87540744	0.17469	HNF4A_NR2F1,2.p2	AK156734|Prokr1|58182|prokineticin receptor 1
mm9_v1_chr1_-_64663716_64663821	0.174426	HNF4A_NR2F1,2.p2	AK033578|Fam119a|67099|family with sequence similarity 119, member A	NM_025964|Fam119a|67099|family with sequence similarity 119, member A	AK009673|Fam119a|67099|family with sequence similarity 119, member A	AK009675|Fam119a|67099|family with sequence similarity 119, member A	AK009678|Fam119a|67099|family with sequence similarity 119, member A	AK009679|Fam119a|67099|family with sequence similarity 119, member A	AK009680|Fam119a|67099|family with sequence similarity 119, member A	AK009682|Fam119a|67099|family with sequence similarity 119, member A	AK011433|Fam119a|67099|family with sequence similarity 119, member A
mm9_v1_chrX_-_16394443_16394525	0.174371	HNF4A_NR2F1,2.p2	AK031833|Maob|109731|monoamine oxidase B	BC113182|Maob|109731|monoamine oxidase B	BC113788|Maob|109731|monoamine oxidase B	AK054050|Maob|109731|monoamine oxidase B	NM_172778|Maob|109731|monoamine oxidase B
mm9_v1_chr4_-_133101802_133101911	0.174151	HNF4A_NR2F1,2.p2	Y15522|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	X81443|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	BC011253|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012777|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK032673|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK012321|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)	AK146323|Nudc|18221|nuclear distribution gene C homolog (Aspergillus)
mm9_v1_chr1_+_7079042_7079277	0.174151	HNF4A_NR2F1,2.p2	AK079468|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166166|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168705|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC110360|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK134223|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168606|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC019193|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK187882|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK040848|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK145008|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166593|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr8_+_74743673_74743687	0.174029	HNF4A_NR2F1,2.p2	BC006058|Fam32a|67922|family with sequence similarity 32, member A
mm9_v1_chr6_-_90666474_90666531	0.173941	HNF4A_NR2F1,2.p2	NM_001134383|Iqsec1|232227|IQ motif and Sec7 domain 1
mm9_v1_chr2_+_151931465_151931476	0.17316	HNF4A_NR2F1,2.p2	AK089976|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK159226|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	NM_029688|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK159613|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	AK007296|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)
mm9_v1_chr2_+_32218529_32218697	0.1727	HNF4A_NR2F1,2.p2	AK165687|Ciz1|68379|CDKN1A interacting zinc finger protein 1	AK137961|Ciz1|68379|CDKN1A interacting zinc finger protein 1
mm9_v1_chr13_+_34967355_34967379	0.172405	HNF4A_NR2F1,2.p2	NM_013830|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)	AK165391|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr8_+_74675802_74675827	0.172225	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_+_125773896_125773946	0.172109	HNF4A_NR2F1,2.p2	NM_001163266|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10	NM_138721|Lsm10|116748|U7 snRNP-specific Sm-like protein LSM10
mm9_v1_chr7_-_134339388_134339535	0.171979	HNF4A_NR2F1,2.p2	AK167249|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK030393|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	BC079575|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK154346|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK010582|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	BC006920|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK031694|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	AK034689|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2	NM_027353|Cd2bp2|70233|CD2 antigen (cytoplasmic tail) binding protein 2
mm9_v1_chr3_+_89240625_89240684	0.171943	HNF4A_NR2F1,2.p2	NM_146131|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028858|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159422|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159448|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK160103|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK159633|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK028754|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC027771|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	AK170318|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1	BC034200|Pbxip1|229534|pre-B-cell leukemia transcription factor interacting protein 1
mm9_v1_chr5_+_31216069_31216111	0.171817	HNF4A_NR2F1,2.p2	AK052368|Emilin1|100952|elastin microfibril interfacer 1	AK088995|Emilin1|100952|elastin microfibril interfacer 1	AK020015|Emilin1|100952|elastin microfibril interfacer 1
mm9_v1_chr4_-_134090950_134091025	0.171072	HNF4A_NR2F1,2.p2	AK187934|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr3_+_94497485_94497530	0.171062	HNF4A_NR2F1,2.p2	NM_019414|Selenbp2|20342|selenium binding protein 2	S56599|Selenbp2|20342|selenium binding protein 2	BC024106|Selenbp2|20342|selenium binding protein 2
mm9_v1_chr16_-_21787868_21787881	0.170513	HNF4A_NR2F1,2.p2	BC016899|Ehhadh|74147|enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	AK004867|Ehhadh|74147|enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase
mm9_v1_chr2_+_83652846_83652884	0.170438	HNF4A_NR2F1,2.p2	AK052508|Fam171b|241520|family with sequence similarity 171, member B	BC113787|Fam171b|241520|family with sequence similarity 171, member B	NM_175514|Fam171b|241520|family with sequence similarity 171, member B
mm9_v1_chr13_-_58227306_58227430	0.169839	HNF4A_NR2F1,2.p2	BC048746|Hnrnpa0|77134|heterogeneous nuclear ribonucleoprotein A0
mm9_v1_chr6_+_135015679_135015703	0.169612	HNF4A_NR2F1,2.p2	NM_181444|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A	BC039217|Gprc5a|232431|G protein-coupled receptor, family C, group 5, member A
mm9_v1_chr16_+_23224955_23224980	0.169373	HNF4A_NR2F1,2.p2	AK084124|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1
mm9_v1_chr14_+_63752151_63752250	0.169344	HNF4A_NR2F1,2.p2	M14222|Ctsb|13030|cathepsin B	AK190209|Ctsb|13030|cathepsin B	AK190539|Ctsb|13030|cathepsin B	AK191055|Ctsb|13030|cathepsin B	AK191391|Ctsb|13030|cathepsin B	AK196955|Ctsb|13030|cathepsin B	AK198213|Ctsb|13030|cathepsin B	AK199268|Ctsb|13030|cathepsin B	AK201893|Ctsb|13030|cathepsin B	AK202291|Ctsb|13030|cathepsin B	AK203639|Ctsb|13030|cathepsin B
mm9_v1_chr15_-_81846328_81846578	0.16884	HNF4A_NR2F1,2.p2	AK189878|Pppde2|28075|PPPDE peptidase domain containing 2	BC071205|Pppde2|28075|PPPDE peptidase domain containing 2	BC131979|Pppde2|28075|PPPDE peptidase domain containing 2	BC132642|Pppde2|28075|PPPDE peptidase domain containing 2	BC145235|Pppde2|28075|PPPDE peptidase domain containing 2	AK016347|Pppde2|28075|PPPDE peptidase domain containing 2	AK131703|Pppde2|28075|PPPDE peptidase domain containing 2	AK005963|Pppde2|28075|PPPDE peptidase domain containing 2	AK005706|Pppde2|28075|PPPDE peptidase domain containing 2	BC056972|Pppde2|28075|PPPDE peptidase domain containing 2	NM_134095|Pppde2|28075|PPPDE peptidase domain containing 2
mm9_v1_chr10_+_117578842_117578914	0.168818	HNF4A_NR2F1,2.p2	NM_001162904|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_001162905|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_010785|Mdm1|17245|transformed mouse 3T3 cell double minute 1	NM_148922|Mdm1|17245|transformed mouse 3T3 cell double minute 1	AK004789|Mdm1|17245|transformed mouse 3T3 cell double minute 1	AK011769|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC052680|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC137608|Mdm1|17245|transformed mouse 3T3 cell double minute 1	BC144777|Mdm1|17245|transformed mouse 3T3 cell double minute 1
mm9_v1_chr4_-_132066370_132066424	0.168782	HNF4A_NR2F1,2.p2	BC005672|Sesn2|230784|sestrin 2	NM_144907|Sesn2|230784|sestrin 2	AK170228|Sesn2|230784|sestrin 2	AK170547|Sesn2|230784|sestrin 2	AK143788|Sesn2|230784|sestrin 2
mm9_v1_chr3_-_116671573_116671671	0.168368	HNF4A_NR2F1,2.p2	AF263246|Palmd|114301|palmdelphin	AL391037|Palmd|114301|palmdelphin	AJ312215|Palmd|114301|palmdelphin	AK171869|Palmd|114301|palmdelphin	BC010193|Palmd|114301|palmdelphin	AK043695|Palmd|114301|palmdelphin	AK014531|Palmd|114301|palmdelphin
mm9_v1_chr15_-_36538514_36538548	0.167563	HNF4A_NR2F1,2.p2	X65553|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1	BC003928|Pabpc1|18458|poly(A) binding protein, cytoplasmic 1
mm9_v1_chr19_+_10763393_10763462	0.166449	HNF4A_NR2F1,2.p2	AK030717|Vps37c|107305|vacuolar protein sorting 37C (yeast)
mm9_v1_chr14_+_35487052_35487113	0.16615	HNF4A_NR2F1,2.p2	AK046038|Wapal|218914|wings apart-like homolog (Drosophila)	AK129105|Wapal|218914|wings apart-like homolog (Drosophila)	NM_001004436|Wapal|218914|wings apart-like homolog (Drosophila)
mm9_v1_chr2_-_152656236_152656402	0.165832	HNF4A_NR2F1,2.p2	L35049|Bcl2l1|12048|BCL2-like 1	U51279|Bcl2l1|12048|BCL2-like 1	AK172250|Bcl2l1|12048|BCL2-like 1	U51277|Bcl2l1|12048|BCL2-like 1	AK146461|Bcl2l1|12048|BCL2-like 1
mm9_v1_chr12_+_30687597_30687686	0.165544	HNF4A_NR2F1,2.p2	BC037709|Pxdn|69675|peroxidasin homolog (Drosophila)
mm9_v1_chr1_+_173180542_173180557	0.165311	HNF4A_NR2F1,2.p2	AK028364|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK083534|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	NM_172845|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK157287|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	AK164900|Adamts4|240913|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm9_v1_chr8_-_112089492_112089538	0.164938	HNF4A_NR2F1,2.p2	BC046557|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	NM_178380|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	AK017828|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38	AK153917|Dhx38|64340|DEAH (Asp-Glu-Ala-His) box polypeptide 38
mm9_v1_chr9_+_50425425_50425450	0.164542	HNF4A_NR2F1,2.p2	NM_028300|Pih1d2|72614|PIH1 domain containing 2	AK080744|Pih1d2|72614|PIH1 domain containing 2	BC039645|Pih1d2|72614|PIH1 domain containing 2	AK012458|Pih1d2|72614|PIH1 domain containing 2
mm9_v1_chr10_+_89336253_89336253	0.164337	HNF4A_NR2F1,2.p2	NM_001128086|Anks1b|77531|ankyrin repeat and sterile alpha motif domain containing 1B
mm9_v1_chr2_-_105234998_105235010	0.163795	HNF4A_NR2F1,2.p2	AK214949|Rcn1|19672|reticulocalbin 1
mm9_v1_chr8_+_116963542_116963590	0.16346	HNF4A_NR2F1,2.p2	NM_019573|Wwox|80707|WW domain-containing oxidoreductase
mm9_v1_chr10_+_18564876_18564915	0.163421	HNF4A_NR2F1,2.p2	AF249870|Perp|64058|PERP, TP53 apoptosis effector	NM_022032|Perp|64058|PERP, TP53 apoptosis effector
mm9_v1_chr6_-_128309288_128309372	0.163065	HNF4A_NR2F1,2.p2	
mm9_v1_chr12_+_110693193_110693229	0.162741	HNF4A_NR2F1,2.p2	EU434914|Dlk1|13386|delta-like 1 homolog (Drosophila)	EU434916|Dlk1|13386|delta-like 1 homolog (Drosophila)
mm9_v1_chr7_-_29185621_29185738	0.16274	HNF4A_NR2F1,2.p2	
mm9_v1_chr19_+_8987200_8987263	0.162542	HNF4A_NR2F1,2.p2	
mm9_v1_chr10_-_6806261_6806284	0.162138	HNF4A_NR2F1,2.p2	AK002363|Iyd|70337|iodotyrosine deiodinase	NM_027391|Iyd|70337|iodotyrosine deiodinase	BC023358|Iyd|70337|iodotyrosine deiodinase
mm9_v1_chrX_-_20508584_20508688	0.161304	HNF4A_NR2F1,2.p2	AK152782|Cfp|18636|complement factor properdin	AK159609|Cfp|18636|complement factor properdin	AK159853|Cfp|18636|complement factor properdin	AK150212|Cfp|18636|complement factor properdin	AK171374|Cfp|18636|complement factor properdin	BC132369|Cfp|18636|complement factor properdin	BC138306|Cfp|18636|complement factor properdin	AK154306|Cfp|18636|complement factor properdin	AK159291|Cfp|18636|complement factor properdin	NM_008823|Cfp|18636|complement factor properdin
mm9_v1_chr11_+_120810346_120810440	0.161258	HNF4A_NR2F1,2.p2	AK149707|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK149983|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	NM_001038653|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	NM_001038654|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK141381|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK166048|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK171260|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK169917|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3	AK165596|Slc16a3|80879|solute carrier family 16 (monocarboxylic acid transporters), member 3
mm9_v1_chr13_+_96095155_96095195	0.161241	HNF4A_NR2F1,2.p2	NM_028106|Zbed3|72114|zinc finger, BED domain containing 3	BC085478|Zbed3|72114|zinc finger, BED domain containing 3
mm9_v1_chr5_+_22252006_22252042	0.16092	HNF4A_NR2F1,2.p2	NM_001081231|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	NM_029990|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK033906|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3	AK020916|Lhfpl3|269629|lipoma HMGIC fusion partner-like 3
mm9_v1_chr19_-_6118499_6118649	0.160808	HNF4A_NR2F1,2.p2	AK011298|Sac3d1|66406|SAC3 domain containing 1	AK014138|Sac3d1|66406|SAC3 domain containing 1	AK075930|Sac3d1|66406|SAC3 domain containing 1	AK139556|Sac3d1|66406|SAC3 domain containing 1	AJ131957|Sac3d1|66406|SAC3 domain containing 1	NM_133678|Sac3d1|66406|SAC3 domain containing 1	BC144812|Sac3d1|66406|SAC3 domain containing 1	BC145789|Sac3d1|66406|SAC3 domain containing 1
mm9_v1_chr18_-_24280308_24280378	0.160745	HNF4A_NR2F1,2.p2	BC056426|Ino80c|225280|INO80 complex subunit C	AK083718|Ino80c|225280|INO80 complex subunit C	NM_172625|Ino80c|225280|INO80 complex subunit C	AK077290|Ino80c|225280|INO80 complex subunit C	BC060961|Ino80c|225280|INO80 complex subunit C
mm9_v1_chr18_+_36839209_36839266	0.16071	HNF4A_NR2F1,2.p2	AK170045|Slc35a4|67843|solute carrier family 35, member A4	AK139953|Slc35a4|67843|solute carrier family 35, member A4	AK011633|Slc35a4|67843|solute carrier family 35, member A4	AK018546|Slc35a4|67843|solute carrier family 35, member A4	AK031132|Slc35a4|67843|solute carrier family 35, member A4	AK145812|Slc35a4|67843|solute carrier family 35, member A4	AK164797|Slc35a4|67843|solute carrier family 35, member A4	AK193177|Slc35a4|67843|solute carrier family 35, member A4	AK206257|Slc35a4|67843|solute carrier family 35, member A4	AK209913|Slc35a4|67843|solute carrier family 35, member A4	AK211469|Slc35a4|67843|solute carrier family 35, member A4	AK217954|Slc35a4|67843|solute carrier family 35, member A4
mm9_v1_chr7_+_16683891_16684052	0.160317	HNF4A_NR2F1,2.p2	AK050623|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK171998|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	BC004804|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK013895|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK004826|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK005372|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK136689|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	NM_025898|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr10_+_13686174_13686209	0.160218	HNF4A_NR2F1,2.p2	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr11_+_69715343_69715451	0.160171	HNF4A_NR2F1,2.p2	NM_001013414|Neurl4|216860|neuralized homolog 4 (Drosophila)	AK157107|Neurl4|216860|neuralized homolog 4 (Drosophila)
mm9_v1_chr11_-_98859189_98859196	0.160103	HNF4A_NR2F1,2.p2	U01915|Top2a|21973|topoisomerase (DNA) II alpha
mm9_v1_chr13_+_93125099_93125109	0.159867	HNF4A_NR2F1,2.p2	V00734|Dhfr|13361|dihydrofolate reductase	AK031241|Dhfr|13361|dihydrofolate reductase
mm9_v1_chr5_-_134714418_134714419	0.158945	HNF4A_NR2F1,2.p2	AK198068|Gtf2i|14886|general transcription factor II I
mm9_v1_chr5_+_137960107_137960139	0.15883	HNF4A_NR2F1,2.p2	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr10_-_7383345_7383410	0.158582	HNF4A_NR2F1,2.p2	NM_008786|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	AK148789|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
mm9_v1_chr12_-_106103285_106103341	0.158533	HNF4A_NR2F1,2.p2	AB047978|Clmn|94040|calmin	AB059643|Clmn|94040|calmin	AB059644|Clmn|94040|calmin	AB059645|Clmn|94040|calmin	AB059646|Clmn|94040|calmin	AB059647|Clmn|94040|calmin	AB059648|Clmn|94040|calmin	NM_001040682|Clmn|94040|calmin	NM_053155|Clmn|94040|calmin
mm9_v1_chr7_+_147311582_147311619	0.158481	HNF4A_NR2F1,2.p2	AF226656|Paox|212503|polyamine oxidase (exo-N4-amino)	AK030664|Paox|212503|polyamine oxidase (exo-N4-amino)	NM_153783|Paox|212503|polyamine oxidase (exo-N4-amino)	BC082783|Paox|212503|polyamine oxidase (exo-N4-amino)	AM049402|Paox|212503|polyamine oxidase (exo-N4-amino)	AK159137|Paox|212503|polyamine oxidase (exo-N4-amino)
mm9_v1_chr10_+_128185549_128185593	0.158408	HNF4A_NR2F1,2.p2	BC049647|Wibg|78428|within bgcn homolog (Drosophila)	NM_001170869|Wibg|78428|within bgcn homolog (Drosophila)
mm9_v1_chr12_-_112723995_112724011	0.158367	HNF4A_NR2F1,2.p2	AK140917|Gm266|212539|predicted gene 266	AK166394|Gm266|212539|predicted gene 266
mm9_v1_chr10_+_7383108_7383253	0.157814	HNF4A_NR2F1,2.p2	AK083146|A630066F11Rik|320642|RIKEN cDNA A630066F11 gene	AK039358|A630066F11Rik|320642|RIKEN cDNA A630066F11 gene	AK042171|A630066F11Rik|320642|RIKEN cDNA A630066F11 gene	BC018310|A630066F11Rik|320642|RIKEN cDNA A630066F11 gene
mm9_v1_chr11_-_83391984_83392037	0.157717	HNF4A_NR2F1,2.p2	AF128195|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128196|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128197|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128198|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128199|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128200|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128201|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128202|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128203|Ccl9|20308|chemokine (C-C motif) ligand 9	AF128204|Ccl9|20308|chemokine (C-C motif) ligand 9	BC139318|Ccl9|20308|chemokine (C-C motif) ligand 9	BC145962|Ccl9|20308|chemokine (C-C motif) ligand 9	U49513|Ccl9|20308|chemokine (C-C motif) ligand 9	AK151131|Ccl9|20308|chemokine (C-C motif) ligand 9	AK155036|Ccl9|20308|chemokine (C-C motif) ligand 9	AK154511|Ccl9|20308|chemokine (C-C motif) ligand 9	AK154657|Ccl9|20308|chemokine (C-C motif) ligand 9	AK155032|Ccl9|20308|chemokine (C-C motif) ligand 9	AK151649|Ccl9|20308|chemokine (C-C motif) ligand 9
mm9_v1_chr4_-_12098960_12099006	0.157711	HNF4A_NR2F1,2.p2	BC055848|Fam92a|68099|family with sequence similarity 92, member A	AK013129|Fam92a|68099|family with sequence similarity 92, member A	AK019574|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chr2_-_155652383_155652474	0.157626	HNF4A_NR2F1,2.p2	BC024442|Eif6|16418|eukaryotic translation initiation factor 6	AK018313|Eif6|16418|eukaryotic translation initiation factor 6	AF047046|Eif6|16418|eukaryotic translation initiation factor 6	AK151559|Eif6|16418|eukaryotic translation initiation factor 6	AK167422|Eif6|16418|eukaryotic translation initiation factor 6	AK003447|Eif6|16418|eukaryotic translation initiation factor 6	AK151102|Eif6|16418|eukaryotic translation initiation factor 6	AK152093|Eif6|16418|eukaryotic translation initiation factor 6	AK152215|Eif6|16418|eukaryotic translation initiation factor 6	AK152832|Eif6|16418|eukaryotic translation initiation factor 6	AK159157|Eif6|16418|eukaryotic translation initiation factor 6	AK012218|Eif6|16418|eukaryotic translation initiation factor 6	AK088707|Eif6|16418|eukaryotic translation initiation factor 6	AK005384|Eif6|16418|eukaryotic translation initiation factor 6	AK007594|Eif6|16418|eukaryotic translation initiation factor 6	AK134364|Eif6|16418|eukaryotic translation initiation factor 6	AK150720|Eif6|16418|eukaryotic translation initiation factor 6	AK150400|Eif6|16418|eukaryotic translation initiation factor 6	AK150931|Eif6|16418|eukaryotic translation initiation factor 6	AK151089|Eif6|16418|eukaryotic translation initiation factor 6	AK151644|Eif6|16418|eukaryotic translation initiation factor 6	AK168257|Eif6|16418|eukaryotic translation initiation factor 6	AK152416|Eif6|16418|eukaryotic translation initiation factor 6	AF108462|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr19_-_4287408_4287579	0.157607	HNF4A_NR2F1,2.p2	AK153543|Adrbk1|110355|adrenergic receptor kinase, beta 1
mm9_v1_chr3_-_84386546_84386619	0.157234	HNF4A_NR2F1,2.p2	NM_001081093|Arfip1|99889|ADP-ribosylation factor interacting protein 1
mm9_v1_chr19_-_44620336_44620337	0.157142	HNF4A_NR2F1,2.p2	AK158017|Sec31b|240667|Sec31 homolog B (S. cerevisiae)	NM_001033343|Sec31b|240667|Sec31 homolog B (S. cerevisiae)
mm9_v1_chr4_-_125840501_125840584	0.15657	HNF4A_NR2F1,2.p2	BC019568|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	AK155132|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	NM_001162533|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene
mm9_v1_chr12_-_92622769_92622848	0.156345	HNF4A_NR2F1,2.p2	BC079647|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene	AK054363|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene	AK017333|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene	AK033284|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene	AK054164|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene	AK029215|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene	BC076614|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene	NM_181815|4930534B04Rik|75216|RIKEN cDNA 4930534B04 gene
mm9_v1_chr17_-_25933989_25933999	0.155074	HNF4A_NR2F1,2.p2	AK087402|Metrn|70083|meteorin, glial cell differentiation regulator	NM_133719|Metrn|70083|meteorin, glial cell differentiation regulator
mm9_v1_chr2_+_166840778_166840830	0.155042	HNF4A_NR2F1,2.p2	AK138442|Ddx27|228889|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	AK146469|Ddx27|228889|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	AK134274|Ddx27|228889|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	BC024730|Ddx27|228889|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	BC024981|Ddx27|228889|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	BC033398|Ddx27|228889|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	NM_153065|Ddx27|228889|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
mm9_v1_chr7_-_106501620_106501629	0.154941	HNF4A_NR2F1,2.p2	BC085143|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	J05609|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK029080|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK031457|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK076474|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK077660|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK077992|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK079460|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK086519|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK086523|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK089993|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK090103|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK159697|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK159998|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK166000|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK167403|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK169422|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	AK168442|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1
mm9_v1_chrX_-_103123825_103123915	0.154879	HNF4A_NR2F1,2.p2	AK172134|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr8_-_74967581_74967676	0.154699	HNF4A_NR2F1,2.p2	AB206786|Calr3|73316|calreticulin 3	AK006582|Calr3|73316|calreticulin 3	NM_028500|Calr3|73316|calreticulin 3
mm9_v1_chr9_-_107516538_107516684	0.154671	HNF4A_NR2F1,2.p2	
mm9_v1_chr10_-_67599315_67599344	0.154625	HNF4A_NR2F1,2.p2	AK162717|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)
mm9_v1_chr11_+_85124739_85124974	0.154283	HNF4A_NR2F1,2.p2	BC051966|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	NM_016910|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK157818|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK166632|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK171714|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK051509|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK050831|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	BC023492|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AK053727|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform	AF200464|Ppm1d|53892|protein phosphatase 1D magnesium-dependent, delta isoform
mm9_v1_chr15_-_78360039_78360054	0.154218	HNF4A_NR2F1,2.p2	DQ002399|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	NM_028331|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	BC071187|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	AK154407|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6
mm9_v1_chr19_-_39815590_39815597	0.154116	HNF4A_NR2F1,2.p2	NM_001039555|Cyp2c68|433247|cytochrome P450, family 2, subfamily c, polypeptide 68
mm9_v1_chr11_+_98209978_98210141	0.153575	HNF4A_NR2F1,2.p2	BC026568|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	NM_144828|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	BC011122|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B
mm9_v1_chr4_+_125724139_125724216	0.153573	HNF4A_NR2F1,2.p2	AK050396|Mrps15|66407|mitochondrial ribosomal protein S15	NM_025544|Mrps15|66407|mitochondrial ribosomal protein S15	AK010330|Mrps15|66407|mitochondrial ribosomal protein S15
mm9_v1_chr11_+_9018007_9018014	0.153378	HNF4A_NR2F1,2.p2	NM_001159401|Upp1|22271|uridine phosphorylase 1
mm9_v1_chr6_+_125299717_125299857	0.152772	HNF4A_NR2F1,2.p2	NM_011609|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	AK154388|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	L26349|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	X57796|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	BC096429|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	AK159989|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	BC052675|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	BC004599|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	M60468|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	X59238|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a
mm9_v1_chr10_+_80102813_80103107	0.152637	HNF4A_NR2F1,2.p2	AK180542|Csnk1g2|103236|casein kinase 1, gamma 2	AK182278|Csnk1g2|103236|casein kinase 1, gamma 2	AK184141|Csnk1g2|103236|casein kinase 1, gamma 2	AK184876|Csnk1g2|103236|casein kinase 1, gamma 2	AK013192|Csnk1g2|103236|casein kinase 1, gamma 2
mm9_v1_chr5_+_114580397_114580568	0.152583	HNF4A_NR2F1,2.p2	BC011039|Ung|22256|uracil DNA glycosylase	NM_001040691|Ung|22256|uracil DNA glycosylase	Y08975|Ung|22256|uracil DNA glycosylase	AK146178|Ung|22256|uracil DNA glycosylase
mm9_v1_chr13_+_100114738_100114812	0.151616	HNF4A_NR2F1,2.p2	AK076008|Mrps27|218506|mitochondrial ribosomal protein S27	NM_173757|Mrps27|218506|mitochondrial ribosomal protein S27	AK087686|Mrps27|218506|mitochondrial ribosomal protein S27	BC049149|Mrps27|218506|mitochondrial ribosomal protein S27
mm9_v1_chr2_+_58998938_58998957	0.151348	HNF4A_NR2F1,2.p2	BC019128|Pkp4|227937|plakophilin 4	BC037597|Pkp4|227937|plakophilin 4
mm9_v1_chr2_+_58999028_58999140	0.151318	HNF4A_NR2F1,2.p2	BC079848|Pkp4|227937|plakophilin 4	BC082578|Pkp4|227937|plakophilin 4	BC042746|Pkp4|227937|plakophilin 4
mm9_v1_chr5_-_130500116_130500235	0.151278	HNF4A_NR2F1,2.p2	AK148764|Asl|109900|argininosuccinate lyase	AK168739|Asl|109900|argininosuccinate lyase	AK138423|Asl|109900|argininosuccinate lyase	BC016670|Asl|109900|argininosuccinate lyase	NM_133768|Asl|109900|argininosuccinate lyase	AK010922|Asl|109900|argininosuccinate lyase	AK076453|Asl|109900|argininosuccinate lyase	AK140160|Asl|109900|argininosuccinate lyase
mm9_v1_chr18_+_36446680_36446818	0.151149	HNF4A_NR2F1,2.p2	AF017631|Pura|19290|purine rich element binding protein A
mm9_v1_chr9_-_57612906_57612972	0.150874	HNF4A_NR2F1,2.p2	AK090215|Clk3|102414|CDC-like kinase 3	AK140015|Clk3|102414|CDC-like kinase 3	BC085084|Clk3|102414|CDC-like kinase 3	AK133936|Clk3|102414|CDC-like kinase 3	AK154003|Clk3|102414|CDC-like kinase 3	AK145880|Clk3|102414|CDC-like kinase 3	AK136481|Clk3|102414|CDC-like kinase 3
mm9_v1_chr10_-_80522871_80522963	0.150828	HNF4A_NR2F1,2.p2	AK039966|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	BC003836|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	NM_024499|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK051005|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK079168|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	AK165557|Sgta|52551|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm9_v1_chr10_-_80958977_80959145	0.150662	HNF4A_NR2F1,2.p2	AK019409|Ncln|103425|nicalin homolog (zebrafish)	AK048954|Ncln|103425|nicalin homolog (zebrafish)	BC019501|Ncln|103425|nicalin homolog (zebrafish)	NM_134009|Ncln|103425|nicalin homolog (zebrafish)	AK128887|Ncln|103425|nicalin homolog (zebrafish)
mm9_v1_chr4_+_124428773_124428893	0.150154	HNF4A_NR2F1,2.p2	AF040094|Inpp5b|16330|inositol polyphosphate-5-phosphatase B	AK004722|Inpp5b|16330|inositol polyphosphate-5-phosphatase B	AK004601|Inpp5b|16330|inositol polyphosphate-5-phosphatase B
mm9_v1_chr8_+_124900561_124900686	0.150083	HNF4A_NR2F1,2.p2	AK166802|Zc3h18|76014|zinc finger CCCH-type containing 18	AK031413|Zc3h18|76014|zinc finger CCCH-type containing 18	AK159881|Zc3h18|76014|zinc finger CCCH-type containing 18	BC003319|Zc3h18|76014|zinc finger CCCH-type containing 18
mm9_v1_chr14_+_22650727_22650812	0.149838	HNF4A_NR2F1,2.p2	AK150504|Vdac2|22334|voltage-dependent anion channel 2	AK150627|Vdac2|22334|voltage-dependent anion channel 2	AK150940|Vdac2|22334|voltage-dependent anion channel 2	AK078555|Vdac2|22334|voltage-dependent anion channel 2	BC003731|Vdac2|22334|voltage-dependent anion channel 2	NM_011695|Vdac2|22334|voltage-dependent anion channel 2	U30838|Vdac2|22334|voltage-dependent anion channel 2	AK012359|Vdac2|22334|voltage-dependent anion channel 2	AK152274|Vdac2|22334|voltage-dependent anion channel 2	AK168328|Vdac2|22334|voltage-dependent anion channel 2	AK168199|Vdac2|22334|voltage-dependent anion channel 2
mm9_v1_chr15_+_98957150_98957201	0.149432	HNF4A_NR2F1,2.p2	AK159335|Spats2|72572|spermatogenesis associated, serine-rich 2
mm9_v1_chr13_-_56279929_56280053	0.149274	HNF4A_NR2F1,2.p2	BC005528|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	AK153654|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	BC031130|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	AK170349|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B
mm9_v1_chr15_-_78359994_78360032	0.149054	HNF4A_NR2F1,2.p2	AK051058|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	BC025489|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6	AK012868|C1qtnf6|72709|C1q and tumor necrosis factor related protein 6
mm9_v1_chr15_-_86016336_86016570	0.148727	HNF4A_NR2F1,2.p2	AK052269|Cerk|223753|ceramide kinase	BC094253|Cerk|223753|ceramide kinase	NM_145475|Cerk|223753|ceramide kinase
mm9_v1_chr16_+_35939047_35939179	0.148328	HNF4A_NR2F1,2.p2	BC010312|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	AK037903|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	AK050032|Parp9|80285|poly (ADP-ribose) polymerase family, member 9	BC003281|Parp9|80285|poly (ADP-ribose) polymerase family, member 9
mm9_v1_chr17_-_35294100_35294153	0.147733	HNF4A_NR2F1,2.p2	AK156277|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr1_-_51972718_51972769	0.147715	HNF4A_NR2F1,2.p2	X69987|Myo1b|17912|myosin IB	AK138265|Myo1b|17912|myosin IB	BC026826|Myo1b|17912|myosin IB	AK053754|Myo1b|17912|myosin IB	AK149409|Myo1b|17912|myosin IB	BC046300|Myo1b|17912|myosin IB
mm9_v1_chr8_+_86184995_86185104	0.147692	HNF4A_NR2F1,2.p2	AK183407|Gipc1|67903|GIPC PDZ domain containing family, member 1
mm9_v1_chr10_+_62706600_62706895	0.147367	HNF4A_NR2F1,2.p2	AK147723|Herc4|67345|hect domain and RLD 4	AK143111|Herc4|67345|hect domain and RLD 4	AK009436|Herc4|67345|hect domain and RLD 4	BC043082|Herc4|67345|hect domain and RLD 4	NM_026101|Herc4|67345|hect domain and RLD 4	AK020652|Herc4|67345|hect domain and RLD 4
mm9_v1_chr9_-_55359898_55360033	0.146921	HNF4A_NR2F1,2.p2	BC096645|Etfa|110842|electron transferring flavoprotein, alpha polypeptide	BC003432|Etfa|110842|electron transferring flavoprotein, alpha polypeptide	AK133525|Etfa|110842|electron transferring flavoprotein, alpha polypeptide	AK032830|Etfa|110842|electron transferring flavoprotein, alpha polypeptide	AK168321|Etfa|110842|electron transferring flavoprotein, alpha polypeptide	AK167572|Etfa|110842|electron transferring flavoprotein, alpha polypeptide
mm9_v1_chr3_-_27052794_27052801	0.146913	HNF4A_NR2F1,2.p2	NM_001177626|Ect2|13605|ect2 oncogene
mm9_v1_chr11_+_80114320_80114577	0.146877	HNF4A_NR2F1,2.p2	AJ313479|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	NM_139228|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC054784|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)	BC056969|Rhbdl3|246104|rhomboid, veinlet-like 3 (Drosophila)
mm9_v1_chr11_+_32646291_32646504	0.146805	HNF4A_NR2F1,2.p2	AK207541|Fbxw11|103583|F-box and WD-40 domain protein 11	AK219433|Fbxw11|103583|F-box and WD-40 domain protein 11	AK216067|Fbxw11|103583|F-box and WD-40 domain protein 11	AK210303|Fbxw11|103583|F-box and WD-40 domain protein 11	AK213659|Fbxw11|103583|F-box and WD-40 domain protein 11	AK215208|Fbxw11|103583|F-box and WD-40 domain protein 11
mm9_v1_chr11_-_62094853_62094905	0.14644	HNF4A_NR2F1,2.p2	BC109343|Zswim7|69747|zinc finger, SWIM-type containing 7	AK010472|Zswim7|69747|zinc finger, SWIM-type containing 7	NM_027198|Zswim7|69747|zinc finger, SWIM-type containing 7
mm9_v1_chr7_-_20218609_20218735	0.146163	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_-_29157512_29157714	0.145795	HNF4A_NR2F1,2.p2	AK131110|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AF465238|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	AK144152|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_001083912|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2	NM_138752|Plekhg2|101497|pleckstrin homology domain containing, family G (with RhoGef domain) member 2
mm9_v1_chr19_-_8860725_8860906	0.145653	HNF4A_NR2F1,2.p2	BC028647|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK144881|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	BC020299|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_146092|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	AK077149|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor	NM_001177798|Taf6l|225895|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
mm9_v1_chr14_-_100548982_100549014	0.145366	HNF4A_NR2F1,2.p2	AB221575|Klf12|16597|Kruppel-like factor 12	Y14295|Klf12|16597|Kruppel-like factor 12	BC067408|Klf12|16597|Kruppel-like factor 12	NM_010636|Klf12|16597|Kruppel-like factor 12
mm9_v1_chr2_+_13504271_13504305	0.144578	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_+_131830270_131830384	0.144091	HNF4A_NR2F1,2.p2	AK132927|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_025579|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK007811|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK013133|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC019668|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor	AK139748|Taf12|66464|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr14_+_55713789_55713939	0.143535	HNF4A_NR2F1,2.p2	AF432864|Thtpa|105663|thiamine triphosphatase	AK085173|Thtpa|105663|thiamine triphosphatase	AK132479|Thtpa|105663|thiamine triphosphatase
mm9_v1_chr9_-_44226073_44226112	0.143388	HNF4A_NR2F1,2.p2	BC096560|Ccdc84|382073|coiled-coil domain containing 84	BC055929|Ccdc84|382073|coiled-coil domain containing 84	NM_201372|Ccdc84|382073|coiled-coil domain containing 84	AK171754|Ccdc84|382073|coiled-coil domain containing 84	AK052757|Ccdc84|382073|coiled-coil domain containing 84	BC116877|Ccdc84|382073|coiled-coil domain containing 84	BC116879|Ccdc84|382073|coiled-coil domain containing 84	BC144712|Ccdc84|382073|coiled-coil domain containing 84	BC144713|Ccdc84|382073|coiled-coil domain containing 84
mm9_v1_chr4_+_118808330_118808432	0.143365	HNF4A_NR2F1,2.p2	S77924|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr8_+_82197575_82197613	0.143302	HNF4A_NR2F1,2.p2	BC042641|Otud4|73945|OTU domain containing 4
mm9_v1_chr2_-_3336293_3336378	0.142894	HNF4A_NR2F1,2.p2	X64455|Meig1|104362|meiosis expressed gene 1	AK006347|Meig1|104362|meiosis expressed gene 1	AK007239|Meig1|104362|meiosis expressed gene 1
mm9_v1_chr10_-_67599367_67599429	0.142381	HNF4A_NR2F1,2.p2	AF401550|Arid5b|71371|AT rich interactive domain 5B (MRF1-like)
mm9_v1_chr10_+_79390058_79390085	0.142091	HNF4A_NR2F1,2.p2	AK141283|Arid3a|13496|AT rich interactive domain 3A (BRIGHT-like)
mm9_v1_chr17_+_79315805_79315867	0.141725	HNF4A_NR2F1,2.p2	NM_001177402|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	NM_001177403|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	AK003199|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene	AK027910|1110001A16Rik|68554|RIKEN cDNA 1110001A16 gene
mm9_v1_chrX_-_138740574_138740725	0.141313	HNF4A_NR2F1,2.p2	AK014537|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	BC028942|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	AK005246|Kcne1l|66240|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm9_v1_chr2_-_164630347_164630363	0.141201	HNF4A_NR2F1,2.p2	AK033724|Acot8|170789|acyl-CoA thioesterase 8	BC005792|Acot8|170789|acyl-CoA thioesterase 8	AK151924|Acot8|170789|acyl-CoA thioesterase 8
mm9_v1_chr7_-_4453210_4453293	0.140579	HNF4A_NR2F1,2.p2	AK144521|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK046570|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK010836|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK144691|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	NM_029834|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C
mm9_v1_chr11_+_96902859_96902922	0.140538	HNF4A_NR2F1,2.p2	AK002865|Mrpl10|107732|mitochondrial ribosomal protein L10	NM_026154|Mrpl10|107732|mitochondrial ribosomal protein L10	AK078499|Mrpl10|107732|mitochondrial ribosomal protein L10	AK171028|Mrpl10|107732|mitochondrial ribosomal protein L10	AK007643|Mrpl10|107732|mitochondrial ribosomal protein L10	AK078463|Mrpl10|107732|mitochondrial ribosomal protein L10	AK150774|Mrpl10|107732|mitochondrial ribosomal protein L10	BC016219|Mrpl10|107732|mitochondrial ribosomal protein L10	AK141835|Mrpl10|107732|mitochondrial ribosomal protein L10
mm9_v1_chr4_-_74924159_74924210	0.140294	HNF4A_NR2F1,2.p2	AK003640|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	BC022621|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	NM_025849|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene	AK013937|3110001D03Rik|66928|RIKEN cDNA 3110001D03 gene
mm9_v1_chr12_-_85741801_85741813	0.140133	HNF4A_NR2F1,2.p2	AK079267|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK002618|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr15_-_36070139_36070154	0.140027	HNF4A_NR2F1,2.p2	AK158239|Rgs22|626596|regulator of G-protein signalling 22	NM_001195748|Rgs22|626596|regulator of G-protein signalling 22
mm9_v1_chrX_+_98469429_98469601	0.13983	HNF4A_NR2F1,2.p2	BC090654|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)	NM_021521|Med12|59024|mediator of RNA polymerase II transcription, subunit 12 homolog (yeast)
mm9_v1_chr4_-_141094387_141094511	0.139617	HNF4A_NR2F1,2.p2	AK137647|Spen|56381|SPEN homolog, transcriptional regulator (Drosophila)	NM_019763|Spen|56381|SPEN homolog, transcriptional regulator (Drosophila)
mm9_v1_chr14_-_76410654_76410753	0.139586	HNF4A_NR2F1,2.p2	BC027173|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	AK144858|Gtf2f2|68705|general transcription factor IIF, polypeptide 2	NM_026816|Gtf2f2|68705|general transcription factor IIF, polypeptide 2
mm9_v1_chr19_-_6932673_6932702	0.139441	HNF4A_NR2F1,2.p2	BC151001|Ccdc88b|78317|coiled-coil domain containing 88B	BC151009|Ccdc88b|78317|coiled-coil domain containing 88B	BC157946|Ccdc88b|78317|coiled-coil domain containing 88B	NM_001081291|Ccdc88b|78317|coiled-coil domain containing 88B
mm9_v1_chr12_-_113052051_113052070	0.139328	HNF4A_NR2F1,2.p2	AK014491|Xrcc3|74335|X-ray repair complementing defective repair in Chinese hamster cells 3	NM_028875|Xrcc3|74335|X-ray repair complementing defective repair in Chinese hamster cells 3
mm9_v1_chr17_+_35378690_35378814	0.13932	HNF4A_NR2F1,2.p2	NM_019693|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	AK002779|H2-Q6|110557|histocompatibility 2, Q region locus 6	AK171507|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	AK051034|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	BC011067|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	BC024859|Ddx39b|53817|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm9_v1_chr2_+_53050461_53050505	0.13904	HNF4A_NR2F1,2.p2	AK146750|Arl6ip6|65103|ADP-ribosylation factor-like 6 interacting protein 6
mm9_v1_chr15_-_98568883_98568907	0.137968	HNF4A_NR2F1,2.p2	
mm9_v1_chr10_+_79642100_79642260	0.137659	HNF4A_NR2F1,2.p2	AK140544|Efna2|13637|ephrin A2	NM_007909|Efna2|13637|ephrin A2
mm9_v1_chr5_+_130535973_130536156	0.137508	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_+_54547344_54547366	0.137414	HNF4A_NR2F1,2.p2	AK046476|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK076175|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	AK141909|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4	NM_021422|Dnaja4|58233|DnaJ (Hsp40) homolog, subfamily A, member 4
mm9_v1_chr16_-_4790212_4790249	0.136957	HNF4A_NR2F1,2.p2	AK166141|5730403B10Rik|66626|RIKEN cDNA 5730403B10 gene
mm9_v1_chr17_+_34727032_34727160	0.136908	HNF4A_NR2F1,2.p2	AK155863|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC021942|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)
mm9_v1_chrX_-_49518428_49518445	0.136656	HNF4A_NR2F1,2.p2	X83577|Gpc4|14735|glypican 4
mm9_v1_chr19_+_9016335_9016460	0.136574	HNF4A_NR2F1,2.p2	AK149834|Mta2|23942|metastasis-associated gene family, member 2	BC079847|Mta2|23942|metastasis-associated gene family, member 2	NM_011842|Mta2|23942|metastasis-associated gene family, member 2	AK077548|Mta2|23942|metastasis-associated gene family, member 2	AK147099|Mta2|23942|metastasis-associated gene family, member 2	AK159979|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr11_+_105829364_105829480	0.135977	HNF4A_NR2F1,2.p2	BC083109|Ace|11421|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm9_v1_chr10_+_20059547_20059574	0.135932	HNF4A_NR2F1,2.p2	AK169491|Bclaf1|72567|BCL2-associated transcription factor 1
mm9_v1_chr2_+_72123787_72123852	0.135671	HNF4A_NR2F1,2.p2	AK087363|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	BC023718|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	AK045444|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene
mm9_v1_chr1_-_75313519_75313542	0.135505	HNF4A_NR2F1,2.p2	BC092232|Dnpep|13437|aspartyl aminopeptidase	AK166276|Dnpep|13437|aspartyl aminopeptidase
mm9_v1_chr2_+_173563060_173563229	0.135272	HNF4A_NR2F1,2.p2	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr7_-_29965500_29965550	0.135165	HNF4A_NR2F1,2.p2	BC004075|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK159795|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK159926|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK166718|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK002921|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK003436|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK153329|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK150493|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK051257|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK020132|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
mm9_v1_chr2_-_104250490_104250490	0.134716	HNF4A_NR2F1,2.p2	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr1_+_173770709_173770788	0.134402	HNF4A_NR2F1,2.p2	NM_013489|Cd84|12523|CD84 antigen	AF043445|Cd84|12523|CD84 antigen	AK171067|Cd84|12523|CD84 antigen	AK037385|Cd84|12523|CD84 antigen	AK040694|Cd84|12523|CD84 antigen	AK156464|Cd84|12523|CD84 antigen	AK157075|Cd84|12523|CD84 antigen	BC140952|Cd84|12523|CD84 antigen	BC144736|Cd84|12523|CD84 antigen	AK154834|Cd84|12523|CD84 antigen	AB196812|Cd84|12523|CD84 antigen	AB196813|Cd84|12523|CD84 antigen	AB196814|Cd84|12523|CD84 antigen	AB196815|Cd84|12523|CD84 antigen
mm9_v1_chr17_-_15080040_15080162	0.134314	HNF4A_NR2F1,2.p2	AK004434|1190001L17Rik|68923|RIKEN cDNA 1190001L17 gene	AK077050|Wdr27|71682|WD repeat domain 27	NM_175173|Wdr27|71682|WD repeat domain 27	AK084217|Wdr27|71682|WD repeat domain 27	AK002615|Wdr27|71682|WD repeat domain 27
mm9_v1_chr7_-_17402066_17402094	0.13429	HNF4A_NR2F1,2.p2	AK156156|Fkrp|243853|fukutin related protein	AK135089|Fkrp|243853|fukutin related protein	AK168308|Fkrp|243853|fukutin related protein	NM_173430|Fkrp|243853|fukutin related protein	AK166068|Fkrp|243853|fukutin related protein
mm9_v1_chr16_-_78576898_78576912	0.133982	HNF4A_NR2F1,2.p2	AK009258|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed	NM_025967|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr11_-_80191456_80191500	0.133152	HNF4A_NR2F1,2.p2	AK135352|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	AK017667|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene	BC055024|5730455P16Rik|70591|RIKEN cDNA 5730455P16 gene
mm9_v1_chr6_-_83004374_83004564	0.133018	HNF4A_NR2F1,2.p2	AK159188|Htra2|64704|HtrA serine peptidase 2	BC033276|Htra2|64704|HtrA serine peptidase 2	AF164513|Htra2|64704|HtrA serine peptidase 2	AF175324|Htra2|64704|HtrA serine peptidase 2	AK146338|Htra2|64704|HtrA serine peptidase 2	BC049880|Htra2|64704|HtrA serine peptidase 2	NM_019752|Htra2|64704|HtrA serine peptidase 2
mm9_v1_chr4_-_129219870_129219947	0.132918	HNF4A_NR2F1,2.p2	AK076080|Hdac1|433759|histone deacetylase 1	BC092070|Hdac1|433759|histone deacetylase 1	U80780|Hdac1|433759|histone deacetylase 1	BC092285|Hdac1|433759|histone deacetylase 1	NM_008228|Hdac1|433759|histone deacetylase 1	X98207|Hdac1|433759|histone deacetylase 1	BC108371|Hdac1|433759|histone deacetylase 1
mm9_v1_chrX_-_7667574_7667627	0.1329	HNF4A_NR2F1,2.p2	U42471|Was|22376|Wiskott-Aldrich syndrome homolog (human)	U29673|Was|22376|Wiskott-Aldrich syndrome homolog (human)	U54788|Was|22376|Wiskott-Aldrich syndrome homolog (human)	NM_009515|Was|22376|Wiskott-Aldrich syndrome homolog (human)
mm9_v1_chr1_+_141398282_141398309	0.132277	HNF4A_NR2F1,2.p2	NM_031164|F13b|14060|coagulation factor XIII, beta subunit	AK149397|F13b|14060|coagulation factor XIII, beta subunit	D10071|F13b|14060|coagulation factor XIII, beta subunit	BC030166|F13b|14060|coagulation factor XIII, beta subunit
mm9_v1_chr17_+_57498108_57498162	0.132241	HNF4A_NR2F1,2.p2	NM_010130|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	AK155862|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	AK151682|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	U66888|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	U66889|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	U66890|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	U66891|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	U66892|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	AK149898|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	X93328|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	AK133202|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	BC075688|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1	AK151303|Emr1|13733|EGF-like module containing, mucin-like, hormone receptor-like sequence 1
mm9_v1_chr4_-_150379857_150379983	0.1321	HNF4A_NR2F1,2.p2	DQ196346|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr1_+_153418502_153418564	0.132026	HNF4A_NR2F1,2.p2	NM_022018|Fam129a|63913|family with sequence similarity 129, member A
mm9_v1_chr2_-_60221287_60221381	0.132014	HNF4A_NR2F1,2.p2	AF395445|Ly75|17076|lymphocyte antigen 75	NM_013825|Ly75|17076|lymphocyte antigen 75	BC150734|Ly75|17076|lymphocyte antigen 75	U19271|Ly75|17076|lymphocyte antigen 75	AK049301|Ly75|17076|lymphocyte antigen 75	AK144922|Ly75|17076|lymphocyte antigen 75	AK157921|Ly75|17076|lymphocyte antigen 75
mm9_v1_chr1_+_89516886_89517022	0.131801	HNF4A_NR2F1,2.p2	NM_001110192|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	NM_001110193|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	NM_010566|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U39203|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AK143560|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U52044|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AK162401|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AF228679|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	U51742|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	AF125996|Inpp5d|16331|inositol polyphosphate-5-phosphatase D	BC108328|Inpp5d|16331|inositol polyphosphate-5-phosphatase D
mm9_v1_chr9_-_108478289_108478560	0.131652	HNF4A_NR2F1,2.p2	
mm9_v1_chr14_-_17407701_17408109	0.131386	HNF4A_NR2F1,2.p2	AK078471|Rarb|218772|retinoic acid receptor, beta	NM_011243|Rarb|218772|retinoic acid receptor, beta	S92180|Rarb|218772|retinoic acid receptor, beta	S56660|Rarb|218772|retinoic acid receptor, beta	AK054178|Rarb|218772|retinoic acid receptor, beta	BC076597|Rarb|218772|retinoic acid receptor, beta	X56573|Rarb|218772|retinoic acid receptor, beta
mm9_v1_chr2_-_150865063_150865140	0.13132	HNF4A_NR2F1,2.p2	AK164971|Nanp|67311|N-acetylneuraminic acid phosphatase	BC018527|Nanp|67311|N-acetylneuraminic acid phosphatase	AK005566|Nanp|67311|N-acetylneuraminic acid phosphatase	AK021344|Nanp|67311|N-acetylneuraminic acid phosphatase	BC083086|Nanp|67311|N-acetylneuraminic acid phosphatase	NM_026086|Nanp|67311|N-acetylneuraminic acid phosphatase
mm9_v1_chr1_-_13364092_13364163	0.131157	HNF4A_NR2F1,2.p2	AF000582|Ncoa2|17978|nuclear receptor coactivator 2	AK048972|Ncoa2|17978|nuclear receptor coactivator 2	AK087443|Ncoa2|17978|nuclear receptor coactivator 2	U39060|Ncoa2|17978|nuclear receptor coactivator 2	AK052117|Ncoa2|17978|nuclear receptor coactivator 2	NM_001077695|Ncoa2|17978|nuclear receptor coactivator 2	NM_008678|Ncoa2|17978|nuclear receptor coactivator 2
mm9_v1_chr5_-_36826896_36826947	0.131155	HNF4A_NR2F1,2.p2	NM_001170454|Tada2b|231151|transcriptional adaptor 2B
mm9_v1_chr18_-_60908267_60908331	0.130852	HNF4A_NR2F1,2.p2	AK147282|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	AK035642|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr2_+_22477837_22477846	0.129565	HNF4A_NR2F1,2.p2	D42051|Gad2|14417|glutamic acid decarboxylase 2	NM_008078|Gad2|14417|glutamic acid decarboxylase 2
mm9_v1_chr5_+_31495623_31495689	0.129348	HNF4A_NR2F1,2.p2	AK156299|Snx17|266781|sorting nexin 17	BC023732|Snx17|266781|sorting nexin 17	AK077650|Snx17|266781|sorting nexin 17	AK077780|Snx17|266781|sorting nexin 17	BC026571|Snx17|266781|sorting nexin 17	NM_153680|Snx17|266781|sorting nexin 17	AK047265|Snx17|266781|sorting nexin 17	BC029675|Snx17|266781|sorting nexin 17
mm9_v1_chr11_+_68912444_68912492	0.129237	HNF4A_NR2F1,2.p2	NM_011065|Per1|18626|period homolog 1 (Drosophila)	BC091645|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr2_-_91773029_91773128	0.129212	HNF4A_NR2F1,2.p2	
mm9_v1_chr4_+_154998952_154998975	0.129064	HNF4A_NR2F1,2.p2	AK135402|Cdk11b|12537|cyclin-dependent kinase 11B
mm9_v1_chr11_+_115465436_115465505	0.128927	HNF4A_NR2F1,2.p2	AK131937|Mrps7|50529|mitchondrial ribosomal protein S7	AK012225|Mrps7|50529|mitchondrial ribosomal protein S7	BC049636|Mrps7|50529|mitchondrial ribosomal protein S7	NM_025305|Mrps7|50529|mitchondrial ribosomal protein S7	AK162024|Mrps7|50529|mitchondrial ribosomal protein S7	AK009251|Mrps7|50529|mitchondrial ribosomal protein S7
mm9_v1_chr5_+_130230890_130230961	0.128849	HNF4A_NR2F1,2.p2	NM_008095|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr4_-_125933482_125933589	0.12873	HNF4A_NR2F1,2.p2	BC023677|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	BC023774|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	AK151613|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_001145970|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1	NM_144941|Mtap7d1|245877|microtubule-associated protein 7 domain containing 1
mm9_v1_chr15_-_88953516_88953579	0.128574	HNF4A_NR2F1,2.p2	AK052441|Tubgcp6|328580|tubulin, gamma complex associated protein 6	AK129420|Tubgcp6|328580|tubulin, gamma complex associated protein 6	NM_001163319|Tubgcp6|328580|tubulin, gamma complex associated protein 6
mm9_v1_chrX_+_46823626_46823742	0.128448	HNF4A_NR2F1,2.p2	NM_001081123|Arhgap36|75404|Rho GTPase activating protein 36	BC145645|Arhgap36|75404|Rho GTPase activating protein 36	AK048167|Arhgap36|75404|Rho GTPase activating protein 36
mm9_v1_chr6_-_66846511_66846514	0.128414	HNF4A_NR2F1,2.p2	AK087755|4930597O21Rik|75373|RIKEN cDNA 4930597O21 gene
mm9_v1_chr14_+_59820064_59820146	0.127639	HNF4A_NR2F1,2.p2	NM_027764|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	AK089923|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	AK088299|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	BC067005|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	AK033501|Rcbtb1|71330|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm9_v1_chr6_-_137597719_137597737	0.127323	HNF4A_NR2F1,2.p2	AK148424|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr1_-_39634096_39634285	0.127231	HNF4A_NR2F1,2.p2	BC115968|Rnf149|67702|ring finger protein 149	NM_001033135|Rnf149|67702|ring finger protein 149	AK155360|Rnf149|67702|ring finger protein 149
mm9_v1_chr9_+_106366204_106366267	0.127056	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_-_135605026_135605189	0.126709	HNF4A_NR2F1,2.p2	NM_009383|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1	AK132677|Tial1|21843|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm9_v1_chr15_+_6395353_6395370	0.126678	HNF4A_NR2F1,2.p2	X05475|C9|12279|complement component 9
mm9_v1_chr5_+_123526279_123526440	0.12662	HNF4A_NR2F1,2.p2	NM_001039723|Tmem120b|330189|transmembrane protein 120B	AK132283|Tmem120b|330189|transmembrane protein 120B	AK158123|Tmem120b|330189|transmembrane protein 120B	BC022593|Tmem120b|330189|transmembrane protein 120B	BC115785|Tmem120b|330189|transmembrane protein 120B	BC118014|Tmem120b|330189|transmembrane protein 120B	AK172110|Tmem120b|330189|transmembrane protein 120B
mm9_v1_chr7_-_31839825_31839873	0.126462	HNF4A_NR2F1,2.p2	BC024671|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_052991|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_194321|Fxyd1|56188|FXYD domain-containing ion transport regulator 1
mm9_v1_chrX_+_7461138_7461164	0.126371	HNF4A_NR2F1,2.p2	AK019529|Slc35a2|22232|solute carrier family 35 (UDP-galactose transporter), member A2
mm9_v1_chr2_-_145760400_145760466	0.126357	HNF4A_NR2F1,2.p2	BC029187|Crnkl1|66877|Crn, crooked neck-like 1 (Drosophila)	AK004749|Crnkl1|66877|Crn, crooked neck-like 1 (Drosophila)	NM_025820|Crnkl1|66877|Crn, crooked neck-like 1 (Drosophila)	AK078271|Crnkl1|66877|Crn, crooked neck-like 1 (Drosophila)	AK088882|Crnkl1|66877|Crn, crooked neck-like 1 (Drosophila)	AK012962|Crnkl1|66877|Crn, crooked neck-like 1 (Drosophila)	AK020002|Crnkl1|66877|Crn, crooked neck-like 1 (Drosophila)
mm9_v1_chr16_+_95924069_95924179	0.126277	HNF4A_NR2F1,2.p2	AK150175|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK014602|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	BC005486|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	J04103|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	BC005504|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK145852|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr2_+_83564553_83564598	0.126255	HNF4A_NR2F1,2.p2	NM_008402|Itgav|16410|integrin alpha V
mm9_v1_chr4_+_135762279_135762338	0.126078	HNF4A_NR2F1,2.p2	NM_001008232|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	AK132294|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	BC085250|Asap3|230837|ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
mm9_v1_chr9_+_43851466_43851476	0.126044	HNF4A_NR2F1,2.p2	NM_009382|Thy1|21838|thymus cell antigen 1, theta
mm9_v1_chr17_-_32557916_32557924	0.125946	HNF4A_NR2F1,2.p2	AF149837|Pglyrp2|57757|peptidoglycan recognition protein 2	AF149838|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315578|Pglyrp2|57757|peptidoglycan recognition protein 2	AF315584|Pglyrp2|57757|peptidoglycan recognition protein 2	AF317548|Pglyrp2|57757|peptidoglycan recognition protein 2	AK050019|Pglyrp2|57757|peptidoglycan recognition protein 2	NM_021319|Pglyrp2|57757|peptidoglycan recognition protein 2
mm9_v1_chr11_+_102254949_102254989	0.125886	HNF4A_NR2F1,2.p2	U73941|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr11_+_61770264_61770301	0.125842	HNF4A_NR2F1,2.p2	AK143663|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	AK046469|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chr17_-_36106668_36106727	0.125477	HNF4A_NR2F1,2.p2	BC046965|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	BC032250|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	BC063094|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	NM_013854|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1	AK077741|Abcf1|224742|ATP-binding cassette, sub-family F (GCN20), member 1
mm9_v1_chr9_-_44076207_44076269	0.12546	HNF4A_NR2F1,2.p2	AK170088|Nlrx1|270151|NLR family member X1	AK089260|Nlrx1|270151|NLR family member X1	AK145780|Nlrx1|270151|NLR family member X1	NM_001163743|Nlrx1|270151|NLR family member X1
mm9_v1_chr15_-_76062991_76063051	0.125214	HNF4A_NR2F1,2.p2	AK044559|Plec|18810|plectin
mm9_v1_chr14_-_73924950_73925048	0.125149	HNF4A_NR2F1,2.p2	AK043196|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	AK168451|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	BC060962|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15	AK032657|Nudt15|214254|nudix (nucleoside diphosphate linked moiety X)-type motif 15
mm9_v1_chr10_-_90586663_90586709	0.124993	HNF4A_NR2F1,2.p2	BC004030|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK077274|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK152341|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK168580|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	NM_133668|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr7_-_125635435_125635488	0.12425	HNF4A_NR2F1,2.p2	AK134593|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	AK137678|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2	NM_001033380|Itpripl2|319622|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm9_v1_chr11_-_5161536_5161672	0.124219	HNF4A_NR2F1,2.p2	BC049771|Kremen1|84035|kringle containing transmembrane protein 1	AB059617|Kremen1|84035|kringle containing transmembrane protein 1	BC082546|Kremen1|84035|kringle containing transmembrane protein 1	NM_032396|Kremen1|84035|kringle containing transmembrane protein 1	AK081707|Kremen1|84035|kringle containing transmembrane protein 1	BC138464|Kremen1|84035|kringle containing transmembrane protein 1	BC138465|Kremen1|84035|kringle containing transmembrane protein 1	AK141321|Kremen1|84035|kringle containing transmembrane protein 1
mm9_v1_chr1_-_51535232_51535262	0.124158	HNF4A_NR2F1,2.p2	AK167541|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK167652|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK028886|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK031015|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK042351|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK049396|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK051607|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077226|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK077767|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK079434|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK083915|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK163613|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK166300|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AY880264|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	NM_028696|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A	AK076824|Obfc2a|109019|oligonucleotide/oligosaccharide-binding fold containing 2A
mm9_v1_chr17_+_35272145_35272203	0.124081	HNF4A_NR2F1,2.p2	NM_057171|Bag6|224727|BCL2-associated athanogene 6	AK148796|Bag6|224727|BCL2-associated athanogene 6
mm9_v1_chr2_-_181194085_181194141	0.124079	HNF4A_NR2F1,2.p2	BC058179|Zbtb46|72147|zinc finger and BTB domain containing 46	AK155148|Zbtb46|72147|zinc finger and BTB domain containing 46	AK011461|Zbtb46|72147|zinc finger and BTB domain containing 46	AK085310|Zbtb46|72147|zinc finger and BTB domain containing 46	NM_028125|Zbtb46|72147|zinc finger and BTB domain containing 46
mm9_v1_chr15_+_86044834_86044934	0.124077	HNF4A_NR2F1,2.p2	AK155770|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154602|Tbc1d22a|223754|TBC1 domain family, member 22a	AK154226|Tbc1d22a|223754|TBC1 domain family, member 22a	AK039627|Tbc1d22a|223754|TBC1 domain family, member 22a	AK155459|Tbc1d22a|223754|TBC1 domain family, member 22a	AK146872|Tbc1d22a|223754|TBC1 domain family, member 22a	BC066009|Tbc1d22a|223754|TBC1 domain family, member 22a	NM_145476|Tbc1d22a|223754|TBC1 domain family, member 22a
mm9_v1_chr6_-_52114644_52114829	0.124023	HNF4A_NR2F1,2.p2	AB221621|Hoxa2|15399|homeobox A2	M93292|Hoxa2|15399|homeobox A2	BC117105|Hoxa2|15399|homeobox A2	BC117107|Hoxa2|15399|homeobox A2	BC027688|Hoxa2|15399|homeobox A2	M95599|Hoxa2|15399|homeobox A2	NM_010451|Hoxa2|15399|homeobox A2
mm9_v1_chr17_-_27889845_27889920	0.123901	HNF4A_NR2F1,2.p2	AK081219|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed	AK082788|D17Wsu92e|224647|DNA segment, Chr 17, Wayne State University 92, expressed
mm9_v1_chr11_-_102331042_102331196	0.123818	HNF4A_NR2F1,2.p2	AK158443|Itga2b|16399|integrin alpha 2b	BC120493|Itga2b|16399|integrin alpha 2b	BC137570|Itga2b|16399|integrin alpha 2b	AK157012|Itga2b|16399|integrin alpha 2b	AF166384|Itga2b|16399|integrin alpha 2b	AF170316|Itga2b|16399|integrin alpha 2b	AK142289|Itga2b|16399|integrin alpha 2b	AK156872|Itga2b|16399|integrin alpha 2b	AK154619|Itga2b|16399|integrin alpha 2b	NM_010575|Itga2b|16399|integrin alpha 2b
mm9_v1_chr5_+_142877419_142877473	0.123676	HNF4A_NR2F1,2.p2	NM_199068|Foxk1|17425|forkhead box K1	AK147375|Foxk1|17425|forkhead box K1	L26507|Foxk1|17425|forkhead box K1	U95016|Foxk1|17425|forkhead box K1	BC060238|Foxk1|17425|forkhead box K1
mm9_v1_chr7_+_26682646_26682679	0.123566	HNF4A_NR2F1,2.p2	AK028103|Cyp2b10|13088|cytochrome P450, family 2, subfamily b, polypeptide 10
mm9_v1_chr11_+_95198329_95198359	0.123419	HNF4A_NR2F1,2.p2	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr19_-_55177562_55177604	0.123256	HNF4A_NR2F1,2.p2	AK047295|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	AK173202|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr3_+_103379203_103379300	0.123201	HNF4A_NR2F1,2.p2	NM_018800|Syt6|54524|synaptotagmin VI	BC050760|Syt6|54524|synaptotagmin VI	AB026803|Syt6|54524|synaptotagmin VI	AB026809|Syt6|54524|synaptotagmin VI	AB026810|Syt6|54524|synaptotagmin VI
mm9_v1_chr4_+_130378728_130379372	0.12292	HNF4A_NR2F1,2.p2	AK206079|Sdc3|20970|syndecan 3	AK180657|Sdc3|20970|syndecan 3	BC059031|Sdc3|20970|syndecan 3	AK087492|Sdc3|20970|syndecan 3	AK194562|Sdc3|20970|syndecan 3
mm9_v1_chr7_+_135390456_135390509	0.122729	HNF4A_NR2F1,2.p2	AK158409|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK085042|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK003170|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK087114|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK156423|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	BC002049|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	AK041233|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	DQ143892|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	DQ143893|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1	DQ143894|Tgfb1i1|21804|transforming growth factor beta 1 induced transcript 1
mm9_v1_chr9_-_4796141_4796273	0.122727	HNF4A_NR2F1,2.p2	BC060697|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK031568|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK047179|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	AK032103|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113180|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_001113181|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)	NM_019691|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm9_v1_chr11_-_100565382_100565591	0.122306	HNF4A_NR2F1,2.p2	AF316999|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	BC029209|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK153342|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK021012|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	NM_030150|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58
mm9_v1_chr8_+_80737195_80737240	0.122116	HNF4A_NR2F1,2.p2	AK006580|Ttc29|73301|tetratricopeptide repeat domain 29	BC048386|Ttc29|73301|tetratricopeptide repeat domain 29	NM_183096|Ttc29|73301|tetratricopeptide repeat domain 29
mm9_v1_chr2_+_172375092_172375143	0.121629	HNF4A_NR2F1,2.p2	NM_009335|Tcfap2c|21420|transcription factor AP-2, gamma	X94694|Tcfap2c|21420|transcription factor AP-2, gamma	AK145166|Tcfap2c|21420|transcription factor AP-2, gamma
mm9_v1_chr17_-_23814415_23814446	0.121622	HNF4A_NR2F1,2.p2	AK160136|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	NM_001161746|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	NM_013749|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a
mm9_v1_chr14_-_65059694_65059876	0.121618	HNF4A_NR2F1,2.p2	AK002356|Msra|110265|methionine sulfoxide reductase A	AK009822|Msra|110265|methionine sulfoxide reductase A	AK030278|Msra|110265|methionine sulfoxide reductase A	BC014738|Msra|110265|methionine sulfoxide reductase A	AK049714|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chr5_+_147042806_147042851	0.121608	HNF4A_NR2F1,2.p2	AK131948|Cdk8|264064|cyclin-dependent kinase 8
mm9_v1_chr7_-_134537132_134537134	0.121576	HNF4A_NR2F1,2.p2	BC010442|E430018J23Rik|101604|RIKEN cDNA E430018J23 gene	AK088474|E430018J23Rik|101604|RIKEN cDNA E430018J23 gene	NM_198011|E430018J23Rik|101604|RIKEN cDNA E430018J23 gene
mm9_v1_chr1_-_55144637_55144685	0.121311	HNF4A_NR2F1,2.p2	X55023|Hspd1|15510|heat shock protein 1 (chaperonin)	BC016400|Hspd1|15510|heat shock protein 1 (chaperonin)	AK143882|Hspd1|15510|heat shock protein 1 (chaperonin)
mm9_v1_chr6_-_85087735_85087775	0.121166	HNF4A_NR2F1,2.p2	BC054423|Spr|20751|sepiapterin reductase	BC010400|Spr|20751|sepiapterin reductase	AK004941|Spr|20751|sepiapterin reductase	NM_011467|Spr|20751|sepiapterin reductase	AK154720|Spr|20751|sepiapterin reductase	S77493|Spr|20751|sepiapterin reductase
mm9_v1_chr4_+_105988790_105988840	0.121115	HNF4A_NR2F1,2.p2	NM_183225|Usp24|329908|ubiquitin specific peptidase 24	AK045043|Usp24|329908|ubiquitin specific peptidase 24
mm9_v1_chr5_+_130732904_130732998	0.120811	HNF4A_NR2F1,2.p2	AK162899|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	NM_001015876|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	AK082884|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	BC068126|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
mm9_v1_chr11_-_69828831_69828933	0.120257	HNF4A_NR2F1,2.p2	Z71189|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	AK076037|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	BC026559|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	NM_017366|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain
mm9_v1_chr9_-_58388489_58388746	0.120019	HNF4A_NR2F1,2.p2	AK031354|Cd276|102657|CD276 antigen	AY190318|Cd276|102657|CD276 antigen	BC019436|Cd276|102657|CD276 antigen	BC056608|Cd276|102657|CD276 antigen	NM_133983|Cd276|102657|CD276 antigen
mm9_v1_chr17_+_29497858_29498034	0.119861	HNF4A_NR2F1,2.p2	AK042260|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	NM_001159538|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	NM_013710|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	AK156151|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	AF017368|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2	DQ344523|Fgd2|26382|FYVE, RhoGEF and PH domain containing 2
mm9_v1_chr7_-_107128967_107128967	0.119771	HNF4A_NR2F1,2.p2	NM_175388|Rnf169|108937|ring finger protein 169
mm9_v1_chrX_-_50622974_50623027	0.119731	HNF4A_NR2F1,2.p2	AK036417|Fam122b|78755|family with sequence similarity 122, member B	AK044896|Fam122b|78755|family with sequence similarity 122, member B	NM_001166365|Fam122b|78755|family with sequence similarity 122, member B	NM_001166583|Fam122b|78755|family with sequence similarity 122, member B	NM_030167|Fam122b|78755|family with sequence similarity 122, member B
mm9_v1_chr4_+_95633972_95633995	0.119396	HNF4A_NR2F1,2.p2	AF487912|Hook1|77963|hook homolog 1 (Drosophila)
mm9_v1_chr17_+_27693518_27693641	0.119314	HNF4A_NR2F1,2.p2	NM_001025427|Hmga1|15361|high mobility group AT-hook 1	NM_001039356|Hmga1|15361|high mobility group AT-hook 1	NM_001166535|Hmga1|15361|high mobility group AT-hook 1	NM_001166536|Hmga1|15361|high mobility group AT-hook 1	NM_001166539|Hmga1|15361|high mobility group AT-hook 1	NM_001166540|Hmga1|15361|high mobility group AT-hook 1	NM_001166541|Hmga1|15361|high mobility group AT-hook 1	NM_001166542|Hmga1|15361|high mobility group AT-hook 1	NM_001166543|Hmga1|15361|high mobility group AT-hook 1	NM_001166544|Hmga1|15361|high mobility group AT-hook 1	NM_001166545|Hmga1|15361|high mobility group AT-hook 1	NM_001166546|Hmga1|15361|high mobility group AT-hook 1	NM_001166537|Hmga1|15361|high mobility group AT-hook 1	NM_016660|Hmga1|15361|high mobility group AT-hook 1	AK171334|Hmga1|15361|high mobility group AT-hook 1	AK155661|Hmga1|15361|high mobility group AT-hook 1	BC013455|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK010617|Hmga1|15361|high mobility group AT-hook 1	AK169783|Hmga1|15361|high mobility group AT-hook 1	NM_001166476|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	NM_001166477|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	AK154957|Hmga1|15361|high mobility group AT-hook 1	AK160036|Hmga1|15361|high mobility group AT-hook 1	BC008125|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1	BC093496|Hmga1-rs1|111241|high mobility group AT-hook I, related sequence 1
mm9_v1_chr8_-_124353386_124353468	0.119045	HNF4A_NR2F1,2.p2	AK089954|Klhdc4|234825|kelch domain containing 4	BC023738|Klhdc4|234825|kelch domain containing 4	BC058359|Klhdc4|234825|kelch domain containing 4	AK161674|Klhdc4|234825|kelch domain containing 4	BC012312|Klhdc4|234825|kelch domain containing 4	NM_145605|Klhdc4|234825|kelch domain containing 4
mm9_v1_chr13_+_14156038_14156092	0.118925	HNF4A_NR2F1,2.p2	AK136105|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK041414|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_194262|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	NM_198122|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK161669|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)	AK031062|Arid4b|94246|AT rich interactive domain 4B (RBP1-like)
mm9_v1_chr7_-_112730004_112730048	0.118884	HNF4A_NR2F1,2.p2	AK144340|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK030748|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	NM_009685|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr6_+_125095236_125095314	0.118695	HNF4A_NR2F1,2.p2	AK044382|Iffo1|320678|intermediate filament family orphan 1	AK163571|Iffo1|320678|intermediate filament family orphan 1	NM_178787|Iffo1|320678|intermediate filament family orphan 1	AK028273|Iffo1|320678|intermediate filament family orphan 1	AK044709|Iffo1|320678|intermediate filament family orphan 1	AK053568|Iffo1|320678|intermediate filament family orphan 1	AK044728|Iffo1|320678|intermediate filament family orphan 1	NM_001039669|Iffo1|320678|intermediate filament family orphan 1	AK031129|Iffo1|320678|intermediate filament family orphan 1
mm9_v1_chr2_+_109857966_109858261	0.118323	HNF4A_NR2F1,2.p2	AK147056|Ccdc34|68201|coiled-coil domain containing 34	NM_026613|Ccdc34|68201|coiled-coil domain containing 34	BC108339|Ccdc34|68201|coiled-coil domain containing 34	AK019172|Ccdc34|68201|coiled-coil domain containing 34	AK033555|Ccdc34|68201|coiled-coil domain containing 34	AK019247|Ccdc34|68201|coiled-coil domain containing 34	AK012383|Ccdc34|68201|coiled-coil domain containing 34	BC062248|Ccdc34|68201|coiled-coil domain containing 34	AK014021|Ccdc34|68201|coiled-coil domain containing 34	BC089458|Ccdc34|68201|coiled-coil domain containing 34	BC049229|Ccdc34|68201|coiled-coil domain containing 34
mm9_v1_chr4_+_122960059_122960153	0.118182	HNF4A_NR2F1,2.p2	BC058263|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	BC056432|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4	NM_130881|Pabpc4|230721|poly(A) binding protein, cytoplasmic 4
mm9_v1_chr4_-_12098948_12098955	0.117989	HNF4A_NR2F1,2.p2	BC020162|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chr9_+_20468065_20468091	0.117925	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_-_8004450_8004510	0.117594	HNF4A_NR2F1,2.p2	BC039125|Yap1|22601|yes-associated protein 1	AK198743|Yap1|22601|yes-associated protein 1
mm9_v1_chr7_-_52744131_52744230	0.117478	HNF4A_NR2F1,2.p2	BC031710|Dhdh|71755|dihydrodiol dehydrogenase (dimeric)	AK154452|Dhdh|71755|dihydrodiol dehydrogenase (dimeric)	BC116414|Dhdh|71755|dihydrodiol dehydrogenase (dimeric)	AK005050|Dhdh|71755|dihydrodiol dehydrogenase (dimeric)	NM_027903|Dhdh|71755|dihydrodiol dehydrogenase (dimeric)
mm9_v1_chr4_+_116180153_116180232	0.117428	HNF4A_NR2F1,2.p2	AK131718|Ipp|16351|IAP promoted placental gene	NM_008389|Ipp|16351|IAP promoted placental gene
mm9_v1_chr17_+_26250190_26250324	0.117215	HNF4A_NR2F1,2.p2	AK044384|Tmem8|60455|transmembrane protein 8 (five membrane-spanning domains)	NM_021793|Tmem8|60455|transmembrane protein 8 (five membrane-spanning domains)	AB045293|Tmem8|60455|transmembrane protein 8 (five membrane-spanning domains)
mm9_v1_chr1_+_187186894_187186924	0.117194	HNF4A_NR2F1,2.p2	AK141072|Eprs|107508|glutamyl-prolyl-tRNA synthetase
mm9_v1_chr11_-_119966955_119966991	0.11714	HNF4A_NR2F1,2.p2	AK194453|Slc38a10|72055|solute carrier family 38, member 10	BC023375|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr1_+_59543450_59543567	0.117135	HNF4A_NR2F1,2.p2	
mm9_v1_chr6_-_108135548_108135588	0.116877	HNF4A_NR2F1,2.p2	BC026981|Sumf1|58911|sulfatase modifying factor 1	AK160917|Sumf1|58911|sulfatase modifying factor 1	AK159192|Sumf1|58911|sulfatase modifying factor 1	AK161203|Sumf1|58911|sulfatase modifying factor 1	AK151874|Sumf1|58911|sulfatase modifying factor 1	NM_145937|Sumf1|58911|sulfatase modifying factor 1
mm9_v1_chr9_-_24578684_24578746	0.116616	HNF4A_NR2F1,2.p2	AF306667|Tbx20|57246|T-box 20	AK052155|Tbx20|57246|T-box 20	AK052389|Tbx20|57246|T-box 20	NM_020496|Tbx20|57246|T-box 20	NM_194263|Tbx20|57246|T-box 20	AF260557|Tbx20|57246|T-box 20
mm9_v1_chr15_+_81494375_81494386	0.116518	HNF4A_NR2F1,2.p2	AK145560|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237000|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237001|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)	AY237002|L3mbtl2|214669|l(3)mbt-like 2 (Drosophila)
mm9_v1_chr17_-_34987131_34987136	0.116445	HNF4A_NR2F1,2.p2	BC062925|Skiv2l|108077|superkiller viralicidic activity 2-like (S. cerevisiae)
mm9_v1_chr14_+_56472872_56473037	0.116429	HNF4A_NR2F1,2.p2	BC151043|Nynrin|277154|NYN domain and retroviral integrase containing	NM_001040072|Nynrin|277154|NYN domain and retroviral integrase containing
mm9_v1_chr14_-_119322244_119322388	0.116347	HNF4A_NR2F1,2.p2	AK129256|Dzip1|66573|DAZ interacting protein 1	NM_025943|Dzip1|66573|DAZ interacting protein 1
mm9_v1_chr15_-_82210591_82210704	0.116107	HNF4A_NR2F1,2.p2	BC016256|Cyp2d22|56448|cytochrome P450, family 2, subfamily d, polypeptide 22	AK086555|Cyp2d22|56448|cytochrome P450, family 2, subfamily d, polypeptide 22	BC006853|Cyp2d22|56448|cytochrome P450, family 2, subfamily d, polypeptide 22	NM_001163472|Cyp2d22|56448|cytochrome P450, family 2, subfamily d, polypeptide 22	NM_019823|Cyp2d22|56448|cytochrome P450, family 2, subfamily d, polypeptide 22
mm9_v1_chr1_-_193961901_193961933	0.116014	HNF4A_NR2F1,2.p2	AK040839|Rcor3|214742|REST corepressor 3	AK050287|Rcor3|214742|REST corepressor 3
mm9_v1_chr10_+_69707847_69707906	0.115528	HNF4A_NR2F1,2.p2	AK004599|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm9_v1_chr2_+_164648495_164648533	0.115445	HNF4A_NR2F1,2.p2	AK010358|Zswim1|71971|zinc finger, SWIM domain containing 1	AK149816|Zswim1|71971|zinc finger, SWIM domain containing 1	AK150174|Zswim1|71971|zinc finger, SWIM domain containing 1
mm9_v1_chr4_-_58219368_58219467	0.115094	HNF4A_NR2F1,2.p2	AK052699|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	AF206329|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	NM_022814|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr19_+_5637741_5637828	0.114927	HNF4A_NR2F1,2.p2	AK089489|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK144565|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK154630|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK155889|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK157076|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	M61909|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	DQ020177|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr2_+_180191031_180191048	0.114917	HNF4A_NR2F1,2.p2	AK033598|Slco4a1|108115|solute carrier organic anion transporter family, member 4a1	AK172688|Slco4a1|108115|solute carrier organic anion transporter family, member 4a1
mm9_v1_chr2_+_29682879_29682924	0.114326	HNF4A_NR2F1,2.p2	AK012124|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK019352|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049227|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK049849|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	NM_026615|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK085178|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	BC026994|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)	AK210360|Urm1|68205|ubiquitin related modifier 1 homolog (S. cerevisiae)
mm9_v1_chr12_-_110098804_110098955	0.114278	HNF4A_NR2F1,2.p2	AK185973|Wars|22375|tryptophanyl-tRNA synthetase
mm9_v1_chr2_+_26439383_26439424	0.114273	HNF4A_NR2F1,2.p2	NM_198724|Egfl7|353156|EGF-like domain 7	NM_198725|Egfl7|353156|EGF-like domain 7	AK002601|Egfl7|353156|EGF-like domain 7	AY239290|Egfl7|353156|EGF-like domain 7	BC024610|Egfl7|353156|EGF-like domain 7
mm9_v1_chr10_+_74869758_74869765	0.114206	HNF4A_NR2F1,2.p2	AK149373|Upb1|103149|ureidopropionase, beta	AK149480|Upb1|103149|ureidopropionase, beta
mm9_v1_chr15_-_79604806_79604924	0.114077	HNF4A_NR2F1,2.p2	BC005426|Dnalc4|54152|dynein, axonemal, light chain 4	AK002657|Dnalc4|54152|dynein, axonemal, light chain 4	AB010031|Dnalc4|54152|dynein, axonemal, light chain 4	AK132061|Dnalc4|54152|dynein, axonemal, light chain 4	NM_017470|Dnalc4|54152|dynein, axonemal, light chain 4
mm9_v1_chr2_+_10075220_10075229	0.113507	HNF4A_NR2F1,2.p2	BC043314|Itih5|209378|inter-alpha (globulin) inhibitor H5
mm9_v1_chr17_-_36408841_36408948	0.113463	HNF4A_NR2F1,2.p2	AB046382|Trim39|79263|tripartite motif-containing 39	NM_024468|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr16_-_55822217_55822256	0.113449	HNF4A_NR2F1,2.p2	BC058188|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK082908|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK141318|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK150519|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK159171|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK160065|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK159093|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK159645|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AB026551|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK152016|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK156826|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK159459|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	AK159917|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta	NM_001159394|Nfkbiz|80859|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta
mm9_v1_chr7_-_29965419_29965499	0.113327	HNF4A_NR2F1,2.p2	BC005717|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK027973|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK150982|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK167948|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK159216|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	AK168886|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
mm9_v1_chr9_+_78463569_78463695	0.113086	HNF4A_NR2F1,2.p2	AK076475|Cd109|235505|CD109 antigen	AK029247|Cd109|235505|CD109 antigen	BC052443|Cd109|235505|CD109 antigen	AK036799|Cd109|235505|CD109 antigen
mm9_v1_chr4_-_40186722_40186871	0.112912	HNF4A_NR2F1,2.p2	BC127163|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC152540|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AY553221|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK052871|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC106095|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK078287|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK155930|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK128929|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	BC027369|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	AK087261|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	NM_172689|Ddx58|230073|DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
mm9_v1_chr5_+_7960430_7960493	0.112846	HNF4A_NR2F1,2.p2	AK040760|Steap4|117167|STEAP family member 4	AJ319746|Steap4|117167|STEAP family member 4	BC006651|Steap4|117167|STEAP family member 4	NM_054098|Steap4|117167|STEAP family member 4	AY029778|Steap4|117167|STEAP family member 4
mm9_v1_chr4_-_11249207_11249316	0.112819	HNF4A_NR2F1,2.p2	AK165377|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	AK144417|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	BC147500|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	BC157932|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	BC157988|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	NM_001081201|Dpy19l4|381510|dpy-19-like 4 (C. elegans)	AK172656|Dpy19l4|381510|dpy-19-like 4 (C. elegans)
mm9_v1_chr1_-_137335507_137335652	0.112812	HNF4A_NR2F1,2.p2	AK137320|Nav1|215690|neuron navigator 1
mm9_v1_chr5_-_34278958_34278970	0.1127	HNF4A_NR2F1,2.p2	AK146185|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK019191|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)
mm9_v1_chr7_-_52636246_52636362	0.112689	HNF4A_NR2F1,2.p2	BC058513|Snrnp70|20637|small nuclear ribonucleoprotein 70 (U1)
mm9_v1_chr15_-_77599271_77599411	0.112533	HNF4A_NR2F1,2.p2	BC006075|Myh9|17886|myosin, heavy polypeptide 9, non-muscle	BC043703|Myh9|17886|myosin, heavy polypeptide 9, non-muscle
mm9_v1_chr14_+_55305007_55305091	0.112418	HNF4A_NR2F1,2.p2	NM_021437|1700123O20Rik|58248|RIKEN cDNA 1700123O20 gene	AK030845|1700123O20Rik|58248|RIKEN cDNA 1700123O20 gene	AB041657|1700123O20Rik|58248|RIKEN cDNA 1700123O20 gene
mm9_v1_chr9_+_64808638_64808765	0.112028	HNF4A_NR2F1,2.p2	NM_001077631|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK169772|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK035654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK041578|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK086850|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	BC024913|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK032095|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	NM_175153|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene	AK050654|2010321M09Rik|69882|RIKEN cDNA 2010321M09 gene
mm9_v1_chr15_-_81846579_81846596	0.111813	HNF4A_NR2F1,2.p2	BC022097|Pppde2|28075|PPPDE peptidase domain containing 2	AK146155|Pppde2|28075|PPPDE peptidase domain containing 2
mm9_v1_chr2_+_174167172_174167173	0.111497	HNF4A_NR2F1,2.p2	BC048834|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr15_-_76026089_76026165	0.111027	HNF4A_NR2F1,2.p2	BC021810|Plec|18810|plectin	AF188010|Plec|18810|plectin	AY480043|Plec|18810|plectin	NM_201394|Plec|18810|plectin
mm9_v1_chr1_-_4483533_4483815	0.110921	HNF4A_NR2F1,2.p2	BC060612|Sox17|20671|SRY-box containing gene 17	BC037521|Sox17|20671|SRY-box containing gene 17	BC027687|Sox17|20671|SRY-box containing gene 17
mm9_v1_chr16_+_45158943_45159161	0.110748	HNF4A_NR2F1,2.p2	AK078877|Atg3|67841|autophagy-related 3 (yeast)	BC010809|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr17_+_46247928_46248012	0.110679	HNF4A_NR2F1,2.p2	AB049953|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK003444|Mrps18a|68565|mitochondrial ribosomal protein S18A	NM_026768|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK028226|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK172171|Mrps18a|68565|mitochondrial ribosomal protein S18A	BC058959|Mrps18a|68565|mitochondrial ribosomal protein S18A
mm9_v1_chr19_+_9022763_9022826	0.110505	HNF4A_NR2F1,2.p2	AK003701|Mta2|23942|metastasis-associated gene family, member 2	AK186547|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr5_-_92738981_92739016	0.1102	HNF4A_NR2F1,2.p2	BC042708|Sdad1|231452|SDA1 domain containing 1	AK164608|Sdad1|231452|SDA1 domain containing 1
mm9_v1_chr11_+_94491055_94491166	0.110143	HNF4A_NR2F1,2.p2	AK159374|Lrrc59|98238|leucine rich repeat containing 59	AK159552|Lrrc59|98238|leucine rich repeat containing 59	AK166576|Lrrc59|98238|leucine rich repeat containing 59	AK053450|Lrrc59|98238|leucine rich repeat containing 59	BC006877|Lrrc59|98238|leucine rich repeat containing 59	NM_133807|Lrrc59|98238|leucine rich repeat containing 59	AK169390|Lrrc59|98238|leucine rich repeat containing 59	BC066172|Lrrc59|98238|leucine rich repeat containing 59	AK167604|Lrrc59|98238|leucine rich repeat containing 59	AK169250|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr18_+_60934249_60934326	0.109667	HNF4A_NR2F1,2.p2	NM_020600|Rps14|20044|ribosomal protein S14	AK028106|Rps14|20044|ribosomal protein S14	AK003148|Rps14|20044|ribosomal protein S14	AK011213|Rps14|20044|ribosomal protein S14	AK012425|Rps14|20044|ribosomal protein S14	AK012584|Rps14|20044|ribosomal protein S14	AK019233|Rps14|20044|ribosomal protein S14	AK146976|Rps14|20044|ribosomal protein S14	AK168237|Rps14|20044|ribosomal protein S14	AK146325|Rps14|20044|ribosomal protein S14	BC042940|Rps14|20044|ribosomal protein S14	BC062874|Rps14|20044|ribosomal protein S14
mm9_v1_chr11_+_69812965_69813148	0.109641	HNF4A_NR2F1,2.p2	Y17676|Phf23|78246|PHD finger protein 23
mm9_v1_chr12_-_103057112_103057240	0.10947	HNF4A_NR2F1,2.p2	AK165018|Fbln5|23876|fibulin 5	AK085170|Fbln5|23876|fibulin 5	AK084895|Fbln5|23876|fibulin 5
mm9_v1_chr2_+_38206759_38206827	0.109407	HNF4A_NR2F1,2.p2	AK053572|Lhx2|16870|LIM homeobox protein 2	NM_010710|Lhx2|16870|LIM homeobox protein 2
mm9_v1_chr2_-_127555628_127555667	0.10936	HNF4A_NR2F1,2.p2	AK078971|Mall|228576|mal, T-cell differentiation protein-like	AK163867|Mall|228576|mal, T-cell differentiation protein-like	NM_145532|Mall|228576|mal, T-cell differentiation protein-like	BC012256|Mall|228576|mal, T-cell differentiation protein-like
mm9_v1_chr11_+_75327028_75327076	0.109301	HNF4A_NR2F1,2.p2	BC080288|Scarf1|380713|scavenger receptor class F, member 1	NM_001004157|Scarf1|380713|scavenger receptor class F, member 1	AK220215|Scarf1|380713|scavenger receptor class F, member 1	AK133477|Scarf1|380713|scavenger receptor class F, member 1	BC057600|Scarf1|380713|scavenger receptor class F, member 1
mm9_v1_chr2_+_70893791_70893908	0.109279	HNF4A_NR2F1,2.p2	AK081839|Dcaf17|75763|DDB1 and CUL4 associated factor 17	NM_001165980|Dcaf17|75763|DDB1 and CUL4 associated factor 17	NM_001165981|Dcaf17|75763|DDB1 and CUL4 associated factor 17	NM_001165982|Dcaf17|75763|DDB1 and CUL4 associated factor 17	NM_198005|Dcaf17|75763|DDB1 and CUL4 associated factor 17	AK160679|Dcaf17|75763|DDB1 and CUL4 associated factor 17	AK014717|Dcaf17|75763|DDB1 and CUL4 associated factor 17	AK032671|Dcaf17|75763|DDB1 and CUL4 associated factor 17	BC031546|Dcaf17|75763|DDB1 and CUL4 associated factor 17
mm9_v1_chr12_-_103807640_103807779	0.108713	HNF4A_NR2F1,2.p2	AK194177|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr4_-_108079288_108079333	0.108519	HNF4A_NR2F1,2.p2	AK004091|Gpx7|67305|glutathione peroxidase 7	AK014199|Gpx7|67305|glutathione peroxidase 7	AK084382|Gpx7|67305|glutathione peroxidase 7	AK165221|Gpx7|67305|glutathione peroxidase 7	NM_024198|Gpx7|67305|glutathione peroxidase 7	BC003228|Gpx7|67305|glutathione peroxidase 7
mm9_v1_chr1_-_179726514_179726745	0.108281	HNF4A_NR2F1,2.p2	BC139404|Adss|11566|adenylosuccinate synthetase, non muscle	BC139417|Adss|11566|adenylosuccinate synthetase, non muscle	AK004877|Adss|11566|adenylosuccinate synthetase, non muscle	L24554|Adss|11566|adenylosuccinate synthetase, non muscle	AK010263|Adss|11566|adenylosuccinate synthetase, non muscle	AK148420|Adss|11566|adenylosuccinate synthetase, non muscle	AK170279|Adss|11566|adenylosuccinate synthetase, non muscle	AK043273|Adss|11566|adenylosuccinate synthetase, non muscle	AK028060|Adss|11566|adenylosuccinate synthetase, non muscle	NM_007422|Adss|11566|adenylosuccinate synthetase, non muscle
mm9_v1_chr2_-_26766098_26766111	0.107686	HNF4A_NR2F1,2.p2	AK161053|Med22|20933|mediator complex subunit 22	AK166250|Med22|20933|mediator complex subunit 22
mm9_v1_chr13_+_3633271_3633328	0.107592	HNF4A_NR2F1,2.p2	AF403041|Asb13|142688|ankyrin repeat and SOCS box-containing 13	NM_178283|Asb13|142688|ankyrin repeat and SOCS box-containing 13	AK078289|Asb13|142688|ankyrin repeat and SOCS box-containing 13	BC018240|Asb13|142688|ankyrin repeat and SOCS box-containing 13	NM_080857|Asb13|142688|ankyrin repeat and SOCS box-containing 13
mm9_v1_chr8_-_108351060_108351249	0.107363	HNF4A_NR2F1,2.p2	AK173177|Ranbp10|74334|RAN binding protein 10	BC024698|Ranbp10|74334|RAN binding protein 10	AK048772|Ranbp10|74334|RAN binding protein 10	EU281316|Ranbp10|74334|RAN binding protein 10	AY337314|Ranbp10|74334|RAN binding protein 10	NM_145824|Ranbp10|74334|RAN binding protein 10
mm9_v1_chr3_-_65762057_65762146	0.106907	HNF4A_NR2F1,2.p2	BC094383|Ccnl1|56706|cyclin L1	BC069909|Ccnl1|56706|cyclin L1	BC037204|Ccnl1|56706|cyclin L1	BC117816|Ccnl1|56706|cyclin L1	AF159159|Ccnl1|56706|cyclin L1	AK011629|Ccnl1|56706|cyclin L1	AK051380|Ccnl1|56706|cyclin L1	BC007177|Ccnl1|56706|cyclin L1	AF467251|Ccnl1|56706|cyclin L1	NM_019937|Ccnl1|56706|cyclin L1
mm9_v1_chr3_+_94176747_94176784	0.106655	HNF4A_NR2F1,2.p2	NM_011281|Rorc|19885|RAR-related orphan receptor gamma	AK160122|Rorc|19885|RAR-related orphan receptor gamma	BC014804|Rorc|19885|RAR-related orphan receptor gamma	U43508|Rorc|19885|RAR-related orphan receptor gamma
mm9_v1_chr8_+_81552119_81552167	0.106506	HNF4A_NR2F1,2.p2	AK028267|Zfp827|622675|zinc finger protein 827	AK019287|Zfp827|622675|zinc finger protein 827
mm9_v1_chr5_+_67652034_67652135	0.106366	HNF4A_NR2F1,2.p2	BC016570|Tmem33|67878|transmembrane protein 33	BC023966|Tmem33|67878|transmembrane protein 33	AK019127|Tmem33|67878|transmembrane protein 33
mm9_v1_chr2_-_75542535_75542545	0.106335	HNF4A_NR2F1,2.p2	BC057948|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr18_+_78546492_78546501	0.106218	HNF4A_NR2F1,2.p2	BC158101|Gm6133|620155|60S ribosomal protein L17 pseudogene
mm9_v1_chr4_+_151648348_151648470	0.106187	HNF4A_NR2F1,2.p2	NM_178406|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr11_+_62944973_62945074	0.106129	HNF4A_NR2F1,2.p2	NM_008885|Pmp22|18858|peripheral myelin protein 22	M32240|Pmp22|18858|peripheral myelin protein 22	BC010765|Pmp22|18858|peripheral myelin protein 22	AK076005|Pmp22|18858|peripheral myelin protein 22	AK171745|Pmp22|18858|peripheral myelin protein 22
mm9_v1_chr10_+_88194103_88194147	0.105963	HNF4A_NR2F1,2.p2	AK088330|Arl1|104303|ADP-ribosylation factor-like 1	AK009226|Arl1|104303|ADP-ribosylation factor-like 1	BC116894|Arl1|104303|ADP-ribosylation factor-like 1	BC116896|Arl1|104303|ADP-ribosylation factor-like 1
mm9_v1_chr16_-_17840640_17840707	0.105753	HNF4A_NR2F1,2.p2	AK190829|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK193104|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK195067|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK196273|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK198182|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK202437|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK204997|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr19_-_10137491_10137508	0.105466	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_+_73205454_73205492	0.105071	HNF4A_NR2F1,2.p2	BC013777|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	BC029642|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AF230356|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'
mm9_v1_chr1_-_51972771_51972812	0.104901	HNF4A_NR2F1,2.p2	BC054786|Myo1b|17912|myosin IB	AK161062|Myo1b|17912|myosin IB	AK141207|Myo1b|17912|myosin IB
mm9_v1_chr3_-_57496415_57496458	0.104864	HNF4A_NR2F1,2.p2	AK134766|Gm410|242037|predicted gene 410	AK138483|Gm410|242037|predicted gene 410	NM_001033349|Gm410|242037|predicted gene 410
mm9_v1_chr8_+_72758086_72758131	0.104799	HNF4A_NR2F1,2.p2	AK042293|Sugp2|234373|SURP and G patch domain containing 2	NM_001168290|Sugp2|234373|SURP and G patch domain containing 2	NM_172755|Sugp2|234373|SURP and G patch domain containing 2	AF518875|Sugp2|234373|SURP and G patch domain containing 2
mm9_v1_chr11_+_115836022_115836269	0.104739	HNF4A_NR2F1,2.p2	L04678|Itgb4|192897|integrin beta 4	AK147424|Itgb4|192897|integrin beta 4	NM_001005608|Itgb4|192897|integrin beta 4	NM_133663|Itgb4|192897|integrin beta 4	AK048888|Itgb4|192897|integrin beta 4
mm9_v1_chr15_-_7348393_7348394	0.104684	HNF4A_NR2F1,2.p2	AK158909|Egflam|268780|EGF-like, fibronectin type III and laminin G domains
mm9_v1_chrX_-_49034524_49034544	0.104557	HNF4A_NR2F1,2.p2	AK031649|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr4_-_122638401_122638432	0.104482	HNF4A_NR2F1,2.p2	BC060526|Mfsd2a|76574|major facilitator superfamily domain containing 2A	BC046793|Mfsd2a|76574|major facilitator superfamily domain containing 2A	AK006096|Mfsd2a|76574|major facilitator superfamily domain containing 2A	NM_029662|Mfsd2a|76574|major facilitator superfamily domain containing 2A
mm9_v1_chr9_-_50885151_50885198	0.104108	HNF4A_NR2F1,2.p2	AK165695|Layn|244864|layilin	AK086930|Layn|244864|layilin	BC139816|Layn|244864|layilin	NM_001033534|Layn|244864|layilin
mm9_v1_chr1_-_95532192_95532205	0.10393	HNF4A_NR2F1,2.p2	BC029875|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr10_+_38853828_38853873	0.103927	HNF4A_NR2F1,2.p2	AK148039|Tube1|71924|epsilon-tubulin 1	NM_028006|Tube1|71924|epsilon-tubulin 1	BC062179|Tube1|71924|epsilon-tubulin 1	AK039886|Tube1|71924|epsilon-tubulin 1	AK010005|Tube1|71924|epsilon-tubulin 1	AK041416|Tube1|71924|epsilon-tubulin 1	AK087403|Tube1|71924|epsilon-tubulin 1
mm9_v1_chr3_+_90070455_90070469	0.103891	HNF4A_NR2F1,2.p2	NM_201407|Dennd4b|229541|DENN/MADD domain containing 4B	AK155638|Dennd4b|229541|DENN/MADD domain containing 4B
mm9_v1_chr9_-_103132606_103132682	0.103777	HNF4A_NR2F1,2.p2	BC012313|Trf|22041|transferrin	NM_133977|Trf|22041|transferrin	AK150782|Trf|22041|transferrin
mm9_v1_chr12_-_112217151_112217320	0.103743	HNF4A_NR2F1,2.p2	AK010867|Ankrd9|74251|ankyrin repeat domain 9	BC023687|Ankrd9|74251|ankyrin repeat domain 9	AK172167|Ankrd9|74251|ankyrin repeat domain 9	AK032641|Ankrd9|74251|ankyrin repeat domain 9	NM_175207|Ankrd9|74251|ankyrin repeat domain 9	AK051108|Ankrd9|74251|ankyrin repeat domain 9
mm9_v1_chr13_-_34437042_34437162	0.10346	HNF4A_NR2F1,2.p2	AK147397|Slc22a23|73102|solute carrier family 22, member 23	NM_001033167|Slc22a23|73102|solute carrier family 22, member 23
mm9_v1_chr11_+_103032358_103032714	0.103328	HNF4A_NR2F1,2.p2	NM_001077698|Fmnl1|57778|formin-like 1	NM_019679|Fmnl1|57778|formin-like 1	AF215666|Fmnl1|57778|formin-like 1	AF006466|Fmnl1|57778|formin-like 1
mm9_v1_chr11_+_94491207_94491351	0.103317	HNF4A_NR2F1,2.p2	AK183165|Lrrc59|98238|leucine rich repeat containing 59
mm9_v1_chr17_+_56812772_56812816	0.103165	HNF4A_NR2F1,2.p2	AK155301|Ranbp3|71810|RAN binding protein 3	BC145892|Ranbp3|71810|RAN binding protein 3	BC145894|Ranbp3|71810|RAN binding protein 3	AK154201|Ranbp3|71810|RAN binding protein 3	AK167731|Ranbp3|71810|RAN binding protein 3	AK133949|Ranbp3|71810|RAN binding protein 3	AK040481|Ranbp3|71810|RAN binding protein 3	BC066005|Ranbp3|71810|RAN binding protein 3
mm9_v1_chr4_+_19502296_19502357	0.103112	HNF4A_NR2F1,2.p2	AK002442|Fam82b|66302|family with sequence similarity 82, member B	AK010421|Fam82b|66302|family with sequence similarity 82, member B	AK160266|Fam82b|66302|family with sequence similarity 82, member B	AK019968|Fam82b|66302|family with sequence similarity 82, member B	BC025158|Fam82b|66302|family with sequence similarity 82, member B	AK029446|Fam82b|66302|family with sequence similarity 82, member B	AK009059|Fam82b|66302|family with sequence similarity 82, member B
mm9_v1_chr2_+_75542804_75542924	0.102975	HNF4A_NR2F1,2.p2	AK053216|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene	AK078602|E030042O20Rik|320474|RIKEN cDNA E030042O20 gene
mm9_v1_chr6_-_86683330_86683393	0.102727	HNF4A_NR2F1,2.p2	BC054767|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK146964|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK004716|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK155238|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	NM_011818|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)
mm9_v1_chr15_+_101925801_101925989	0.102716	HNF4A_NR2F1,2.p2	AK217495|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr6_+_48487567_48487613	0.102599	HNF4A_NR2F1,2.p2	NM_133764|Atp6v0e2|76252|ATPase, H+ transporting, lysosomal V0 subunit E2	BC010790|Atp6v0e2|76252|ATPase, H+ transporting, lysosomal V0 subunit E2
mm9_v1_chr9_-_32348863_32349036	0.102553	HNF4A_NR2F1,2.p2	BC138791|Fli1|14247|Friend leukemia integration 1	BC138792|Fli1|14247|Friend leukemia integration 1	AK042111|Fli1|14247|Friend leukemia integration 1	AK154714|Fli1|14247|Friend leukemia integration 1	NM_008026|Fli1|14247|Friend leukemia integration 1	AK036655|Fli1|14247|Friend leukemia integration 1	X59421|Fli1|14247|Friend leukemia integration 1
mm9_v1_chr4_-_155027293_155027492	0.102522	HNF4A_NR2F1,2.p2	AK146510|Mmp23|26561|matrix metallopeptidase 23	BC107357|Mmp23|26561|matrix metallopeptidase 23	BC107358|Mmp23|26561|matrix metallopeptidase 23	AF085742|Mmp23|26561|matrix metallopeptidase 23	NM_011985|Mmp23|26561|matrix metallopeptidase 23
mm9_v1_chr1_-_75176965_75176984	0.102366	HNF4A_NR2F1,2.p2	AK151165|Abcb6|74104|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm9_v1_chrX_-_54579777_54579845	0.101499	HNF4A_NR2F1,2.p2	AK028642|Arhgef6|73341|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm9_v1_chrX_-_71491736_71491773	0.101471	HNF4A_NR2F1,2.p2	BC038478|Flna|192176|filamin, alpha	AK089311|Flna|192176|filamin, alpha
mm9_v1_chr4_+_84851029_84851075	0.10136	HNF4A_NR2F1,2.p2	AK035210|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr13_+_94077988_94077988	0.100968	HNF4A_NR2F1,2.p2	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chrX_-_71674201_71674273	0.100689	HNF4A_NR2F1,2.p2	Z11911|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked	AK088135|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked	AK148031|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked	AK165207|G6pdx|14381|glucose-6-phosphate dehydrogenase X-linked
mm9_v1_chr15_+_81626455_81626512	0.10068	HNF4A_NR2F1,2.p2	AJ223207|Zc3h7b|20286|zinc finger CCCH type containing 7B
mm9_v1_chr8_-_98012679_98012750	0.100643	HNF4A_NR2F1,2.p2	AK076042|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	AJ001420|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	BC047143|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	NM_009974|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide	AK002927|Csnk2a2|13000|casein kinase 2, alpha prime polypeptide
mm9_v1_chr13_-_107727010_107727028	0.100593	HNF4A_NR2F1,2.p2	AK044487|Ipo11|76582|importin 11	AK087793|Ipo11|76582|importin 11
mm9_v1_chr8_-_87502592_87502646	0.100376	HNF4A_NR2F1,2.p2	X54332|Junb|16477|Jun-B oncogene	BC092302|Junb|16477|Jun-B oncogene	BC003790|Junb|16477|Jun-B oncogene	AK155043|Junb|16477|Jun-B oncogene	AK150286|Junb|16477|Jun-B oncogene	AK156596|Junb|16477|Jun-B oncogene	AK159140|Junb|16477|Jun-B oncogene	AK159661|Junb|16477|Jun-B oncogene	AK088643|Junb|16477|Jun-B oncogene	AK141592|Junb|16477|Jun-B oncogene	AK144871|Junb|16477|Jun-B oncogene	AK145550|Junb|16477|Jun-B oncogene	AK149794|Junb|16477|Jun-B oncogene	AK150111|Junb|16477|Jun-B oncogene	AK150247|Junb|16477|Jun-B oncogene	AK159083|Junb|16477|Jun-B oncogene	AK159520|Junb|16477|Jun-B oncogene	AK160066|Junb|16477|Jun-B oncogene	NM_008416|Junb|16477|Jun-B oncogene	J03236|Junb|16477|Jun-B oncogene
mm9_v1_chr5_+_35292092_35292155	0.100158	HNF4A_NR2F1,2.p2	AK053804|Rgs12|71729|regulator of G-protein signaling 12	NM_173402|Rgs12|71729|regulator of G-protein signaling 12	BC040396|Rgs12|71729|regulator of G-protein signaling 12	AK144822|Rgs12|71729|regulator of G-protein signaling 12	AK145890|Rgs12|71729|regulator of G-protein signaling 12
mm9_v1_chr18_+_50355539_50355658	0.100155	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_-_25947338_25947397	0.0999399	HNF4A_NR2F1,2.p2	AK043047|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr5_-_31495457_31495511	0.0997357	HNF4A_NR2F1,2.p2	M98036|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_001127355|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_001127356|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	NM_010122|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta
mm9_v1_chr16_-_17531176_17531234	0.0997286	HNF4A_NR2F1,2.p2	AK154641|Thap7|69009|THAP domain containing 7
mm9_v1_chr6_-_38826156_38826247	0.0997211	HNF4A_NR2F1,2.p2	NM_010433|Hipk2|15258|homeodomain interacting protein kinase 2
mm9_v1_chr6_+_33922645_33922791	0.0992488	HNF4A_NR2F1,2.p2	
mm9_v1_chr16_-_94591826_94592078	0.0989297	HNF4A_NR2F1,2.p2	AF216308|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	BC061117|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159619|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159620|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	AF216307|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr19_+_4099973_4100180	0.0988101	HNF4A_NR2F1,2.p2	AK155377|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AF006467|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	NM_001136078|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK177924|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK179862|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK181080|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK188056|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK188611|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK208861|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK210105|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK210471|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK212060|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1	AK187966|Pitpnm1|18739|phosphatidylinositol transfer protein, membrane-associated 1
mm9_v1_chr5_-_109987907_109988065	0.0987412	HNF4A_NR2F1,2.p2	AB039945|Crlf2|57914|cytokine receptor-like factor 2	BC016580|Crlf2|57914|cytokine receptor-like factor 2	AB031333|Crlf2|57914|cytokine receptor-like factor 2	AF232936|Crlf2|57914|cytokine receptor-like factor 2	AK149928|Crlf2|57914|cytokine receptor-like factor 2	NM_001164735|Crlf2|57914|cytokine receptor-like factor 2	NM_016715|Crlf2|57914|cytokine receptor-like factor 2
mm9_v1_chr8_+_87604638_87604668	0.0980438	HNF4A_NR2F1,2.p2	AK147129|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr4_+_101092307_101092393	0.0980295	HNF4A_NR2F1,2.p2	NM_009647|Ak4|11639|adenylate kinase 4	AK144439|Ak4|11639|adenylate kinase 4	BC086791|Ak4|11639|adenylate kinase 4	D85036|Ak4|11639|adenylate kinase 4	AB020239|Ak4|11639|adenylate kinase 4	BC086663|Ak4|11639|adenylate kinase 4	AK166975|Ak4|11639|adenylate kinase 4
mm9_v1_chr11_+_115626733_115626761	0.0979963	HNF4A_NR2F1,2.p2	NM_028014|2310067B10Rik|71947|RIKEN cDNA 2310067B10 gene	AK155233|2310067B10Rik|71947|RIKEN cDNA 2310067B10 gene
mm9_v1_chr8_-_37676914_37676951	0.0979808	HNF4A_NR2F1,2.p2	AK160715|Dlc1|50768|deleted in liver cancer 1	AF178078|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr3_-_84386435_84386455	0.0975706	HNF4A_NR2F1,2.p2	BC132291|Arfip1|99889|ADP-ribosylation factor interacting protein 1	BC144758|Arfip1|99889|ADP-ribosylation factor interacting protein 1
mm9_v1_chr6_+_42195977_42196020	0.0972946	HNF4A_NR2F1,2.p2	BC051507|Gstk1|76263|glutathione S-transferase kappa 1	BC038151|Gstk1|76263|glutathione S-transferase kappa 1	BC058163|Gstk1|76263|glutathione S-transferase kappa 1	AY279096|Gstk1|76263|glutathione S-transferase kappa 1
mm9_v1_chr17_-_35292893_35292992	0.0971152	HNF4A_NR2F1,2.p2	BC006664|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr1_+_187028043_187028086	0.0969057	HNF4A_NR2F1,2.p2	NM_001163754|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2	AK157509|Rab3gap2|98732|RAB3 GTPase activating protein subunit 2
mm9_v1_chr17_+_25325344_25325353	0.0968884	HNF4A_NR2F1,2.p2	NM_001197024|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr1_+_154621524_154621665	0.0968035	HNF4A_NR2F1,2.p2	AK209951|Arpc5|67771|actin related protein 2/3 complex, subunit 5	AK205293|Arpc5|67771|actin related protein 2/3 complex, subunit 5
mm9_v1_chr15_-_83002624_83002644	0.0967096	HNF4A_NR2F1,2.p2	AK128917|Cyb5r3|109754|cytochrome b5 reductase 3	BC043074|Cyb5r3|109754|cytochrome b5 reductase 3	NM_029787|Cyb5r3|109754|cytochrome b5 reductase 3
mm9_v1_chr12_-_114238614_114238662	0.0964578	HNF4A_NR2F1,2.p2	BC037224|Brf1|72308|BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
mm9_v1_chr5_+_34339258_34339295	0.0964457	HNF4A_NR2F1,2.p2	AK147703|Nat8l|269642|N-acetyltransferase 8-like
mm9_v1_chr6_+_7795223_7795332	0.0964385	HNF4A_NR2F1,2.p2	NM_052993|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	AF157962|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	BC064767|C1galt1|94192|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm9_v1_chr4_-_34754469_34754554	0.0963666	HNF4A_NR2F1,2.p2	AB221605|Zfp292|30046|zinc finger protein 292
mm9_v1_chr5_-_31495395_31495419	0.0963032	HNF4A_NR2F1,2.p2	BC021884|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	AK154364|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta	AK158282|Eif2b4|13667|eukaryotic translation initiation factor 2B, subunit 4 delta
mm9_v1_chr7_-_87679873_87680004	0.0959366	HNF4A_NR2F1,2.p2	AB008674|Blm|12144|Bloom syndrome, RecQ helicase-like	NM_007550|Blm|12144|Bloom syndrome, RecQ helicase-like	AK164605|Blm|12144|Bloom syndrome, RecQ helicase-like	Z98263|Blm|12144|Bloom syndrome, RecQ helicase-like	AK137022|Blm|12144|Bloom syndrome, RecQ helicase-like	AK157898|Blm|12144|Bloom syndrome, RecQ helicase-like	NM_001042527|Blm|12144|Bloom syndrome, RecQ helicase-like
mm9_v1_chr4_-_120689415_120689638	0.0958253	HNF4A_NR2F1,2.p2	AK200754|Smap2|69780|stromal membrane-associated GTPase-activating protein 2
mm9_v1_chr10_-_75931540_75931574	0.0958137	HNF4A_NR2F1,2.p2	AK004411|Ybey|216119|ybeY metallopeptidase
mm9_v1_chr11_-_120432985_120433040	0.0954	HNF4A_NR2F1,2.p2	AK181556|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK182152|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK184763|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK197331|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK199867|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK212202|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide	AK193576|P4hb|18453|prolyl 4-hydroxylase, beta polypeptide
mm9_v1_chr6_-_113841356_113841375	0.0950932	HNF4A_NR2F1,2.p2	DQ406822|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK051287|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	BC075643|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_001036684|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr11_+_3883638_3883715	0.0948113	HNF4A_NR2F1,2.p2	AK007645|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_001177703|Gal3st1|53897|galactose-3-O-sulfotransferase 1	NM_016922|Gal3st1|53897|galactose-3-O-sulfotransferase 1	BC026806|Gal3st1|53897|galactose-3-O-sulfotransferase 1
mm9_v1_chr6_+_17231207_17231331	0.09473	HNF4A_NR2F1,2.p2	AK158419|Cav2|12390|caveolin 2	AF141322|Cav2|12390|caveolin 2	AK004663|Cav2|12390|caveolin 2	AB049604|Cav2|12390|caveolin 2	AB049605|Cav2|12390|caveolin 2
mm9_v1_chr17_+_46339730_46339822	0.094677	HNF4A_NR2F1,2.p2	BC092371|Xpo5|72322|exportin 5	BC055455|Xpo5|72322|exportin 5	AK010389|Xpo5|72322|exportin 5	AF343581|Xpo5|72322|exportin 5	NM_028198|Xpo5|72322|exportin 5	BC131660|Xpo5|72322|exportin 5	BC131661|Xpo5|72322|exportin 5
mm9_v1_chr10_-_77707321_77707347	0.0946561	HNF4A_NR2F1,2.p2	AK154290|Trappc10|216131|trafficking protein particle complex 10
mm9_v1_chr2_+_119456102_119456195	0.0941155	HNF4A_NR2F1,2.p2	BC009096|Nusap1|108907|nucleolar and spindle associated protein 1
mm9_v1_chr19_+_47654508_47654642	0.0940475	HNF4A_NR2F1,2.p2	AF039574|Slk|20874|STE20-like kinase (yeast)	NM_001164639|Slk|20874|STE20-like kinase (yeast)	NM_009289|Slk|20874|STE20-like kinase (yeast)	BC131674|Slk|20874|STE20-like kinase (yeast)	BC131675|Slk|20874|STE20-like kinase (yeast)	AF112855|Slk|20874|STE20-like kinase (yeast)	AK029491|Slk|20874|STE20-like kinase (yeast)
mm9_v1_chr7_-_70357361_70357454	0.0933837	HNF4A_NR2F1,2.p2	AY574266|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AF225980|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK157809|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	L37663|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	NM_007390|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK034208|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7
mm9_v1_chr11_+_21138879_21139023	0.0933235	HNF4A_NR2F1,2.p2	NM_139061|Vps54|245944|vacuolar protein sorting 54 (yeast)
mm9_v1_chr5_+_64203602_64203733	0.0931348	HNF4A_NR2F1,2.p2	AK050792|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	AK002869|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	NM_029554|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr5_-_65928297_65928366	0.0931278	HNF4A_NR2F1,2.p2	AK044403|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene
mm9_v1_chr6_-_85401198_85401297	0.0930588	HNF4A_NR2F1,2.p2	BC115452|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene	AK006658|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene	NM_001163427|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene	NM_028505|1700040I03Rik|73327|RIKEN cDNA 1700040I03 gene
mm9_v1_chr5_+_100468998_100469257	0.092773	HNF4A_NR2F1,2.p2	AK167575|Enoph1|67870|enolase-phosphatase 1	NM_001163035|Enoph1|67870|enolase-phosphatase 1	NM_026421|Enoph1|67870|enolase-phosphatase 1	AK079062|Enoph1|67870|enolase-phosphatase 1	AK009954|Enoph1|67870|enolase-phosphatase 1	AK082747|Enoph1|67870|enolase-phosphatase 1	AK152021|Enoph1|67870|enolase-phosphatase 1	AK159356|Enoph1|67870|enolase-phosphatase 1	AK168696|Enoph1|67870|enolase-phosphatase 1	AK080714|Enoph1|67870|enolase-phosphatase 1	BC021429|Enoph1|67870|enolase-phosphatase 1	AK177338|Enoph1|67870|enolase-phosphatase 1	AK193770|Enoph1|67870|enolase-phosphatase 1
mm9_v1_chr3_+_14578783_14578804	0.0924881	HNF4A_NR2F1,2.p2	X86925|E2f5|13559|E2F transcription factor 5
mm9_v1_chr1_+_145624384_145624593	0.0924172	HNF4A_NR2F1,2.p2	NM_001159866|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	NM_019562|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK017925|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK011117|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	BC006891|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AF148447|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AF175903|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5	AK007860|Uchl5|56207|ubiquitin carboxyl-terminal esterase L5
mm9_v1_chr5_+_137943876_137943900	0.0923534	HNF4A_NR2F1,2.p2	AK020298|9130604C24Rik|77707|RIKEN cDNA 9130604C24 gene
mm9_v1_chr18_+_58996320_58996417	0.0921264	HNF4A_NR2F1,2.p2	BC150736|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	AY135183|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	NM_175506|Adamts19|240322|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19
mm9_v1_chr12_+_110132481_110132526	0.0920444	HNF4A_NR2F1,2.p2	NM_177602|Wdr25|212198|WD repeat domain 25	AK147993|Wdr25|212198|WD repeat domain 25
mm9_v1_chr11_+_120353171_120353266	0.0920293	HNF4A_NR2F1,2.p2	AK083831|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AK008038|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AF188712|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	AK050282|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	BC003222|Slc25a10|27376|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
mm9_v1_chr12_+_41172764_41172922	0.0920076	HNF4A_NR2F1,2.p2	BC141138|Dock4|238130|dedicator of cytokinesis 4
mm9_v1_chr1_+_120218417_120218424	0.0918767	HNF4A_NR2F1,2.p2	NM_026472|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein	AK077770|Mki67ip|67949|Mki67 (FHA domain) interacting nucleolar phosphoprotein
mm9_v1_chr5_-_117565868_117565988	0.0917516	HNF4A_NR2F1,2.p2	BC062176|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK010274|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK150633|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AF469109|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK043652|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK138947|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	BC055764|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	AK045475|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)
mm9_v1_chr10_+_98569715_98569826	0.0917353	HNF4A_NR2F1,2.p2	BC144819|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC145801|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	BC099926|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK050233|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK090075|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	NM_027740|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)	AK045302|Poc1b|382406|POC1 centriolar protein homolog B (Chlamydomonas)
mm9_v1_chr11_-_4604308_4604350	0.0916835	HNF4A_NR2F1,2.p2	AK168491|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X	BC024518|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X	AK002227|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X	BC087874|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X	BC100591|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X	AK012489|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X	AK003881|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X	NM_197979|Uqcr10|66152|ubiquinol-cytochrome c reductase, complex III subunit X
mm9_v1_chr1_+_93437120_93437389	0.0914393	HNF4A_NR2F1,2.p2	AK153774|Asb1|65247|ankyrin repeat and SOCS box-containing 1	NM_001039126|Asb1|65247|ankyrin repeat and SOCS box-containing 1	BC034869|Asb1|65247|ankyrin repeat and SOCS box-containing 1	AK122456|Asb1|65247|ankyrin repeat and SOCS box-containing 1	AF155352|Asb1|65247|ankyrin repeat and SOCS box-containing 1
mm9_v1_chr9_-_20877907_20878057	0.0912762	HNF4A_NR2F1,2.p2	AK010211|Fdx1l|68165|ferredoxin 1-like	AK008401|Fdx1l|68165|ferredoxin 1-like	AK020979|Fdx1l|68165|ferredoxin 1-like	NM_001039824|Fdx1l|68165|ferredoxin 1-like	BC061189|Fdx1l|68165|ferredoxin 1-like	BC172154|Fdx1l|68165|ferredoxin 1-like
mm9_v1_chr6_+_22238226_22238287	0.0906467	HNF4A_NR2F1,2.p2	AK053805|Wnt16|93735|wingless-related MMTV integration site 16	NM_053116|Wnt16|93735|wingless-related MMTV integration site 16	AK054110|Wnt16|93735|wingless-related MMTV integration site 16	BC115811|Wnt16|93735|wingless-related MMTV integration site 16	BC115925|Wnt16|93735|wingless-related MMTV integration site 16	AK043534|Wnt16|93735|wingless-related MMTV integration site 16
mm9_v1_chr2_+_153171562_153171582	0.0905927	HNF4A_NR2F1,2.p2	AK081063|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr19_-_12576485_12576634	0.0905702	HNF4A_NR2F1,2.p2	NM_172442|Dtx4|207521|deltex 4 homolog (Drosophila)
mm9_v1_chr15_-_86016750_86016783	0.0905672	HNF4A_NR2F1,2.p2	AK163087|Cerk|223753|ceramide kinase
mm9_v1_chr10_-_80363606_80363713	0.0904819	HNF4A_NR2F1,2.p2	AF144702|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)	NM_013895|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr6_-_24477549_24477560	0.0902973	HNF4A_NR2F1,2.p2	AK008156|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK008286|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK008414|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK019242|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	BC028633|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK008155|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK009396|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK009461|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK009493|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK009608|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK009652|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK010024|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK010090|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK019084|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK019201|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK019215|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK019291|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	AK019354|Ndufa5|68202|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5
mm9_v1_chr8_+_125925000_125925050	0.0902307	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_-_50425371_50425373	0.0902145	HNF4A_NR2F1,2.p2	AK133777|AU019823|270156|expressed sequence AU019823
mm9_v1_chr5_-_129514313_129514509	0.0900144	HNF4A_NR2F1,2.p2	BC046279|Stx2|13852|syntaxin 2	AK165552|Stx2|13852|syntaxin 2	AK146462|Stx2|13852|syntaxin 2	AK167577|Stx2|13852|syntaxin 2	AK168067|Stx2|13852|syntaxin 2	NM_007941|Stx2|13852|syntaxin 2	D10475|Stx2|13852|syntaxin 2
mm9_v1_chrX_-_156576312_156576363	0.0898013	HNF4A_NR2F1,2.p2	AK168152|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK169289|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK145718|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr2_+_34627729_34627749	0.0896749	HNF4A_NR2F1,2.p2	AK151244|Hspa5|14828|heat shock protein 5	D78645|Hspa5|14828|heat shock protein 5
mm9_v1_chr3_-_89017811_89017848	0.089383	HNF4A_NR2F1,2.p2	AK163982|Mtx1|17827|metaxin 1	AK165547|Mtx1|17827|metaxin 1	L36962|Mtx1|17827|metaxin 1	BC023071|Mtx1|17827|metaxin 1	AK159316|Mtx1|17827|metaxin 1	AK165923|Mtx1|17827|metaxin 1	L10897|Mtx1|17827|metaxin 1	AK086135|Mtx1|17827|metaxin 1
mm9_v1_chr2_-_164860272_164860295	0.0892698	HNF4A_NR2F1,2.p2	BC017152|Ncoa5|228869|nuclear receptor coactivator 5	NM_144892|Ncoa5|228869|nuclear receptor coactivator 5
mm9_v1_chr6_-_6528581_6528672	0.088914	HNF4A_NR2F1,2.p2	U41626|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK135462|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK167914|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC023490|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	BC058117|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK161690|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	X83589|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK160432|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	NM_009169|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1	AK141911|Shfm1|20422|split hand/foot malformation (ectrodactyly) type 1
mm9_v1_chr7_+_149135647_149135669	0.0888241	HNF4A_NR2F1,2.p2	AY660739|Brsk2|75770|BR serine/threonine kinase 2	NM_029426|Brsk2|75770|BR serine/threonine kinase 2
mm9_v1_chr2_-_75542552_75542719	0.0887236	HNF4A_NR2F1,2.p2	BC003340|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK144247|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK029360|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	AK142347|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	BC026943|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	NM_010902|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2	U20532|Nfe2l2|18024|nuclear factor, erythroid derived 2, like 2
mm9_v1_chr1_+_21208679_21208742	0.0885759	HNF4A_NR2F1,2.p2	BC034768|Tmem14a|75712|transmembrane protein 14A	BC060034|Tmem14a|75712|transmembrane protein 14A	NM_029398|Tmem14a|75712|transmembrane protein 14A	AK017734|Tmem14a|75712|transmembrane protein 14A
mm9_v1_chr10_+_59809598_59809683	0.0885331	HNF4A_NR2F1,2.p2	NM_001159572|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	NM_028732|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK079734|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK170059|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK032383|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK159086|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK159864|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK163118|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK170419|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK171045|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK033393|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK030479|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK014600|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	AK131118|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene	BC003967|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene
mm9_v1_chr3_-_33980178_33980268	0.0882247	HNF4A_NR2F1,2.p2	BC024335|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	BC020327|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	AK008267|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	AK010204|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	AK012051|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	AK076602|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	AK007866|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	NM_001026211|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19	NM_026332|Dnajc19|67713|DnaJ (Hsp40) homolog, subfamily C, member 19
mm9_v1_chr2_-_147871630_147871640	0.087963	HNF4A_NR2F1,2.p2	AB231453|Foxa2|15376|forkhead box A2	L10409|Foxa2|15376|forkhead box A2
mm9_v1_chrX_+_71674576_71674653	0.0878685	HNF4A_NR2F1,2.p2	AK148163|Ikbkg|16151|inhibitor of kappaB kinase gamma	NM_001161422|Ikbkg|16151|inhibitor of kappaB kinase gamma
mm9_v1_chr7_+_135206153_135206260	0.0877366	HNF4A_NR2F1,2.p2	NM_001082960|Itgam|16409|integrin alpha M	NM_008401|Itgam|16409|integrin alpha M	AK170324|Itgam|16409|integrin alpha M	AK155671|Itgam|16409|integrin alpha M	AK089521|Itgam|16409|integrin alpha M	AK155717|Itgam|16409|integrin alpha M	AK154474|Itgam|16409|integrin alpha M	AK171150|Itgam|16409|integrin alpha M	AK155006|Itgam|16409|integrin alpha M	AK155520|Itgam|16409|integrin alpha M	AK154224|Itgam|16409|integrin alpha M	AK154798|Itgam|16409|integrin alpha M
mm9_v1_chr17_+_45704145_45704512	0.0875802	HNF4A_NR2F1,2.p2	AK211181|Slc35b2|73836|solute carrier family 35, member B2	AK212100|Slc35b2|73836|solute carrier family 35, member B2	AK207266|Slc35b2|73836|solute carrier family 35, member B2	AK212091|Slc35b2|73836|solute carrier family 35, member B2	AK214463|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr4_-_115726385_115726456	0.0875119	HNF4A_NR2F1,2.p2	BC024628|Nsun4|72181|NOL1/NOP2/Sun domain family, member 4
mm9_v1_chr11_-_96902657_96902728	0.086937	HNF4A_NR2F1,2.p2	AK005668|Lrrc46|69297|leucine rich repeat containing 46	BC022723|Lrrc46|69297|leucine rich repeat containing 46	NM_027026|Lrrc46|69297|leucine rich repeat containing 46	AK158517|Lrrc46|69297|leucine rich repeat containing 46
mm9_v1_chr9_+_55889731_55889871	0.0864599	HNF4A_NR2F1,2.p2	AK076153|Rcn2|26611|reticulocalbin 2
mm9_v1_chr9_-_21793876_21793896	0.08638	HNF4A_NR2F1,2.p2	AK134654|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3	AK053550|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3	AK165023|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3	AK165746|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3	AF239661|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3	NM_023622|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3
mm9_v1_chr2_-_115890747_115890848	0.0861302	HNF4A_NR2F1,2.p2	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr14_+_51427582_51427645	0.0860861	HNF4A_NR2F1,2.p2	AK076193|Parp2|11546|poly (ADP-ribose) polymerase family, member 2	AK141876|Parp2|11546|poly (ADP-ribose) polymerase family, member 2	AJ007780|Parp2|11546|poly (ADP-ribose) polymerase family, member 2	BC052000|Parp2|11546|poly (ADP-ribose) polymerase family, member 2	BC062150|Parp2|11546|poly (ADP-ribose) polymerase family, member 2	NM_009632|Parp2|11546|poly (ADP-ribose) polymerase family, member 2	AF072521|Parp2|11546|poly (ADP-ribose) polymerase family, member 2
mm9_v1_chr8_+_75285778_75285801	0.0860445	HNF4A_NR2F1,2.p2	AK036427|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	AK156729|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	NM_007975|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	BC119461|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	AK153720|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3	AF080215|F2rl3|14065|coagulation factor II (thrombin) receptor-like 3
mm9_v1_chr18_+_12899855_12899944	0.0860423	HNF4A_NR2F1,2.p2	AK132770|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AK016856|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AK075751|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359382|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359383|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359384|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359385|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_001042418|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_001042419|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_001042420|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_027687|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_181731|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	BC107272|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	BC107271|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm9_v1_chrX_-_43809499_43809524	0.0856486	HNF4A_NR2F1,2.p2	NM_001085510|Gm4987|245405|predicted gene 4987
mm9_v1_chr1_+_174012641_174012773	0.0853356	HNF4A_NR2F1,2.p2	NM_009938|Copa|12847|coatomer protein complex subunit alpha	AK162632|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr19_-_44181897_44181978	0.0850339	HNF4A_NR2F1,2.p2	AK035326|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	U12473|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK150039|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK165275|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK018671|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155328|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	BC018243|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK155393|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	AK164236|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_001162410|Chuk|12675|conserved helix-loop-helix ubiquitous kinase	NM_007700|Chuk|12675|conserved helix-loop-helix ubiquitous kinase
mm9_v1_chr10_-_60215524_60215546	0.0850202	HNF4A_NR2F1,2.p2	AK034133|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	AF326986|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	AK157868|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	NM_023596|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	AK051317|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3
mm9_v1_chr8_-_11312686_11312717	0.0846615	HNF4A_NR2F1,2.p2	BC072650|Col4a1|12826|collagen, type IV, alpha 1
mm9_v1_chr1_-_130256055_130256293	0.0845474	HNF4A_NR2F1,2.p2	AK188642|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK177954|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK180079|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK183692|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK194535|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK210474|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK211618|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK150726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146896|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC051658|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC057584|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK145520|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146770|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK146272|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	AK088493|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	D86726|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	NM_008567|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)	BC050886|Mcm6|17219|minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)
mm9_v1_chr7_+_148445746_148445836	0.08415	HNF4A_NR2F1,2.p2	AK164283|Phrf1|101471|PHD and ring finger domains 1
mm9_v1_chr7_-_106501584_106501610	0.0839701	HNF4A_NR2F1,2.p2	AK168870|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1	X60676|Serpinh1|12406|serine (or cysteine) peptidase inhibitor, clade H, member 1
mm9_v1_chr18_-_38114566_38114675	0.0836217	HNF4A_NR2F1,2.p2	AF098295|Hdac3|15183|histone deacetylase 3	AF125536|Hdac3|15183|histone deacetylase 3	AF074881|Hdac3|15183|histone deacetylase 3	AF074882|Hdac3|15183|histone deacetylase 3	AK145158|Hdac3|15183|histone deacetylase 3	NM_010411|Hdac3|15183|histone deacetylase 3	BC139300|Hdac3|15183|histone deacetylase 3	BC139301|Hdac3|15183|histone deacetylase 3
mm9_v1_chr14_-_118450875_118451546	0.083621	HNF4A_NR2F1,2.p2	EU554632|Dct|13190|dopachrome tautomerase	AK214181|Dct|13190|dopachrome tautomerase	AK214448|Dct|13190|dopachrome tautomerase	AK217087|Dct|13190|dopachrome tautomerase	AK212164|Dct|13190|dopachrome tautomerase	AK219002|Dct|13190|dopachrome tautomerase	BC082330|Dct|13190|dopachrome tautomerase	AK209892|Dct|13190|dopachrome tautomerase	AK191654|Dct|13190|dopachrome tautomerase	BC067064|Dct|13190|dopachrome tautomerase	X63349|Dct|13190|dopachrome tautomerase	AK033040|Dct|13190|dopachrome tautomerase	NM_010024|Dct|13190|dopachrome tautomerase	AK202452|Dct|13190|dopachrome tautomerase
mm9_v1_chr11_+_59021811_59021915	0.0836084	HNF4A_NR2F1,2.p2	AK012628|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	NM_024210|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	BC002181|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene	AK009601|2310033P09Rik|67862|RIKEN cDNA 2310033P09 gene
mm9_v1_chr7_+_117161839_117161861	0.0833942	HNF4A_NR2F1,2.p2	AK187705|Ipo7|233726|importin 7
mm9_v1_chr2_+_10075242_10075276	0.0832241	HNF4A_NR2F1,2.p2	AK087428|Itih5|209378|inter-alpha (globulin) inhibitor H5	AK134707|Itih5|209378|inter-alpha (globulin) inhibitor H5	AK077381|Itih5|209378|inter-alpha (globulin) inhibitor H5
mm9_v1_chr4_+_95246111_95246193	0.0831766	HNF4A_NR2F1,2.p2	NM_029347|Fggy|75578|FGGY carbohydrate kinase domain containing	AK085534|Fggy|75578|FGGY carbohydrate kinase domain containing	BC031708|Fggy|75578|FGGY carbohydrate kinase domain containing
mm9_v1_chr18_-_38443954_38444055	0.0831576	HNF4A_NR2F1,2.p2	BC127076|Pcdh12|53601|protocadherin 12	Y08715|Pcdh12|53601|protocadherin 12	AK048100|Pcdh12|53601|protocadherin 12	NM_017378|Pcdh12|53601|protocadherin 12	AK028374|Pcdh12|53601|protocadherin 12
mm9_v1_chr11_+_5662121_5662197	0.0830918	HNF4A_NR2F1,2.p2	AK009198|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK005556|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK008730|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC052911|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC094935|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene
mm9_v1_chr2_-_155937623_155937702	0.0829455	HNF4A_NR2F1,2.p2	AK220288|Cpne1|266692|copine I	BC052473|Rbm12|75710|RNA binding motif protein 12	BC057554|Cpne1|266692|copine I	AK035014|Rbm12|75710|RNA binding motif protein 12	AK080772|Rbm12|75710|RNA binding motif protein 12	AF393215|Rbm12|75710|RNA binding motif protein 12	AF393216|Rbm12|75710|RNA binding motif protein 12	AK028882|Cpne1|266692|copine I	AK152323|Cpne1|266692|copine I	NM_029397|Rbm12|75710|RNA binding motif protein 12	NM_170588|Cpne1|266692|copine I	NM_170590|Cpne1|266692|copine I	NM_170598|Rbm12|75710|RNA binding motif protein 12
mm9_v1_chr5_+_28168688_28168939	0.0828753	HNF4A_NR2F1,2.p2	AK141636|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A	BC115911|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A	BC116654|Htr5a|15563|5-hydroxytryptamine (serotonin) receptor 5A
mm9_v1_chr11_-_120504978_120505082	0.0827874	HNF4A_NR2F1,2.p2	AK139185|Pycr1|209027|pyrroline-5-carboxylate reductase 1	NM_144795|Pycr1|209027|pyrroline-5-carboxylate reductase 1	BC006727|Pycr1|209027|pyrroline-5-carboxylate reductase 1
mm9_v1_chr7_-_88049882_88049956	0.0826406	HNF4A_NR2F1,2.p2	BC028490|Nmb|68039|neuromedin B	AK011929|Nmb|68039|neuromedin B	AK014077|Nmb|68039|neuromedin B	NM_026523|Nmb|68039|neuromedin B
mm9_v1_chr17_-_30024821_30024837	0.0826207	HNF4A_NR2F1,2.p2	NM_001081160|Mdga1|74762|MAM domain containing glycosylphosphatidylinositol anchor 1
mm9_v1_chr6_-_72566691_72566744	0.082561	HNF4A_NR2F1,2.p2	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr14_-_55482884_55482994	0.0824061	HNF4A_NR2F1,2.p2	AK129361|Homez|239099|homeodomain leucine zipper-encoding gene	AY258064|Homez|239099|homeodomain leucine zipper-encoding gene	NM_001177705|Homez|239099|homeodomain leucine zipper-encoding gene
mm9_v1_chr1_-_75313567_75313600	0.0818645	HNF4A_NR2F1,2.p2	AK052001|Dnpep|13437|aspartyl aminopeptidase	NM_016878|Dnpep|13437|aspartyl aminopeptidase
mm9_v1_chr3_+_63100128_63100144	0.0818388	HNF4A_NR2F1,2.p2	AK040730|Mme|17380|membrane metallo endopeptidase	AK080202|Mme|17380|membrane metallo endopeptidase	BC034092|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr5_-_111209468_111209636	0.0818287	HNF4A_NR2F1,2.p2	BC021446|Pus1|56361|pseudouridine synthase 1	BC034359|Pus1|56361|pseudouridine synthase 1	AB041563|Pus1|56361|pseudouridine synthase 1	AK089258|Pus1|56361|pseudouridine synthase 1	NM_001025561|Pus1|56361|pseudouridine synthase 1	NM_019700|Pus1|56361|pseudouridine synthase 1	NM_001025562|Pus1|56361|pseudouridine synthase 1	AK161521|Pus1|56361|pseudouridine synthase 1
mm9_v1_chr17_-_24615972_24616025	0.0815576	HNF4A_NR2F1,2.p2	AF237676|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK002751|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK083731|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	BC015279|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK048102|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK038515|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK077680|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK088951|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	AK040100|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)	NM_019988|Mlst8|56716|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm9_v1_chr3_+_90035515_90035692	0.0813492	HNF4A_NR2F1,2.p2	AK146337|Jtb|23922|jumping translocation breakpoint	NM_206924|Jtb|23922|jumping translocation breakpoint	BC008139|Jtb|23922|jumping translocation breakpoint	AB016490|Jtb|23922|jumping translocation breakpoint	AK004469|Jtb|23922|jumping translocation breakpoint	AK089048|Jtb|23922|jumping translocation breakpoint
mm9_v1_chr10_-_26094990_26095024	0.0807776	HNF4A_NR2F1,2.p2	AK045667|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	NM_172787|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)	AK049597|L3mbtl3|237339|l(3)mbt-like 3 (Drosophila)
mm9_v1_chr10_-_80362828_80362912	0.0806676	HNF4A_NR2F1,2.p2	AK213641|Timm13|30055|translocase of inner mitochondrial membrane 13 homolog (yeast)
mm9_v1_chr10_+_107769872_107769881	0.0805644	HNF4A_NR2F1,2.p2	DQ449073|Pawr|114774|PRKC, apoptosis, WT1, regulator	DQ449074|Pawr|114774|PRKC, apoptosis, WT1, regulator
mm9_v1_chr16_-_38522680_38522764	0.0805051	HNF4A_NR2F1,2.p2	AK081781|4930455C21Rik|76916|RIKEN cDNA 4930455C21 gene	BC002243|4930455C21Rik|76916|RIKEN cDNA 4930455C21 gene	AK012774|4930455C21Rik|76916|RIKEN cDNA 4930455C21 gene	AK015460|4930455C21Rik|76916|RIKEN cDNA 4930455C21 gene	AK078465|4930455C21Rik|76916|RIKEN cDNA 4930455C21 gene	NM_024273|4930455C21Rik|76916|RIKEN cDNA 4930455C21 gene
mm9_v1_chr6_-_113327369_113327436	0.0804876	HNF4A_NR2F1,2.p2	BC032195|Tada3|101206|transcriptional adaptor 3	AK187590|Tada3|101206|transcriptional adaptor 3
mm9_v1_chr11_-_51457826_51457921	0.0804023	HNF4A_NR2F1,2.p2	BC005767|N4bp3|212706|NEDD4 binding protein 3
mm9_v1_chr18_+_53335981_53336033	0.08021	HNF4A_NR2F1,2.p2	AK005470|Snx2|67804|sorting nexin 2	AK002692|Snx2|67804|sorting nexin 2	BC006960|Snx2|67804|sorting nexin 2	NM_026386|Snx2|67804|sorting nexin 2	AK010572|Snx2|67804|sorting nexin 2	AK075929|Snx2|67804|sorting nexin 2	AK153525|Snx2|67804|sorting nexin 2	CT010229|Snx2|67804|sorting nexin 2
mm9_v1_chr15_-_81229961_81230023	0.0801526	HNF4A_NR2F1,2.p2	CT010318|St13|70356|suppression of tumorigenicity 13
mm9_v1_chr11_+_114626702_114626827	0.0794855	HNF4A_NR2F1,2.p2	NM_001102615|Kif19a|286942|kinesin family member 19A	BC151045|Kif19a|286942|kinesin family member 19A	BC151053|Kif19a|286942|kinesin family member 19A	AK155544|Kif19a|286942|kinesin family member 19A	EF570784|Kif19a|286942|kinesin family member 19A
mm9_v1_chr2_-_117168409_117168515	0.079244	HNF4A_NR2F1,2.p2	AF106070|Rasgrp1|19419|RAS guanyl releasing protein 1
mm9_v1_chr14_-_21212709_21212791	0.0792221	HNF4A_NR2F1,2.p2	AK019243|Mrps16|66242|mitochondrial ribosomal protein S16	BC024656|Mrps16|66242|mitochondrial ribosomal protein S16	AK005206|Mrps16|66242|mitochondrial ribosomal protein S16	NM_025440|Mrps16|66242|mitochondrial ribosomal protein S16
mm9_v1_chr19_-_61304260_61304356	0.0790776	HNF4A_NR2F1,2.p2	BC150696|Csf2ra|12982|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	M85078|Csf2ra|12982|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	NM_009970|Csf2ra|12982|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
mm9_v1_chr10_+_18564932_18564972	0.07899	HNF4A_NR2F1,2.p2	AK003734|Perp|64058|PERP, TP53 apoptosis effector	AK009190|Perp|64058|PERP, TP53 apoptosis effector	AK009184|Perp|64058|PERP, TP53 apoptosis effector	BC021772|Perp|64058|PERP, TP53 apoptosis effector
mm9_v1_chr19_-_5912757_5912865	0.0788014	HNF4A_NR2F1,2.p2	U10435|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK215194|Dpf2|19708|D4, zinc and double PHD fingers family 2	BC012709|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK138047|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144848|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK019051|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144106|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK004812|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK144954|Dpf2|19708|D4, zinc and double PHD fingers family 2	U43921|Dpf2|19708|D4, zinc and double PHD fingers family 2	AK145851|Dpf2|19708|D4, zinc and double PHD fingers family 2	NM_011262|Dpf2|19708|D4, zinc and double PHD fingers family 2
mm9_v1_chr13_+_19714972_19715084	0.0786554	HNF4A_NR2F1,2.p2	AK080766|Sfrp4|20379|secreted frizzled-related protein 4	NM_016687|Sfrp4|20379|secreted frizzled-related protein 4	AK009981|Sfrp4|20379|secreted frizzled-related protein 4	AF117709|Sfrp4|20379|secreted frizzled-related protein 4	BC034853|Sfrp4|20379|secreted frizzled-related protein 4
mm9_v1_chr6_+_42306205_42306207	0.0785957	HNF4A_NR2F1,2.p2	AK217332|Zyx|22793|zyxin
mm9_v1_chr1_-_24107036_24107122	0.0785078	HNF4A_NR2F1,2.p2	AK053786|Fam135a|68187|family with sequence similarity 135, member A	AK081262|Fam135a|68187|family with sequence similarity 135, member A
mm9_v1_chr4_-_44079664_44079905	0.0783968	HNF4A_NR2F1,2.p2	AK199019|Gne|50798|glucosamine	AJ132236|Gne|50798|glucosamine
mm9_v1_chr15_-_5194158_5194209	0.0783126	HNF4A_NR2F1,2.p2	BC011193|Ptger4|19219|prostaglandin E receptor 4 (subtype EP4)	AK145045|Ptger4|19219|prostaglandin E receptor 4 (subtype EP4)	AK156428|Ptger4|19219|prostaglandin E receptor 4 (subtype EP4)
mm9_v1_chr11_-_11708917_11708964	0.0780741	HNF4A_NR2F1,2.p2	BC051942|Fignl1|60530|fidgetin-like 1	BC052415|Fignl1|60530|fidgetin-like 1	AK082092|Fignl1|60530|fidgetin-like 1	AK143850|Fignl1|60530|fidgetin-like 1	AK051324|Fignl1|60530|fidgetin-like 1	AK051874|Fignl1|60530|fidgetin-like 1	AK088574|Fignl1|60530|fidgetin-like 1	AK086769|Fignl1|60530|fidgetin-like 1	NM_001163359|Fignl1|60530|fidgetin-like 1	NM_001163360|Fignl1|60530|fidgetin-like 1	NM_021891|Fignl1|60530|fidgetin-like 1
mm9_v1_chr6_-_137597775_137597813	0.0779429	HNF4A_NR2F1,2.p2	L21671|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr8_-_109572384_109572545	0.0774612	HNF4A_NR2F1,2.p2	AK075957|Pdf|68023|peptide deformylase (mitochondrial)	NM_026513|Pdf|68023|peptide deformylase (mitochondrial)
mm9_v1_chr5_+_65221116_65221144	0.0772862	HNF4A_NR2F1,2.p2	AK036932|Klf3|16599|Kruppel-like factor 3 (basic)
mm9_v1_chr9_-_54896301_54896396	0.0772198	HNF4A_NR2F1,2.p2	AY574269|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	AF492840|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	BC138851|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	AK140071|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	NM_148944|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	BC094889|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4
mm9_v1_chr18_-_42110847_42110895	0.0771512	HNF4A_NR2F1,2.p2	BC119251|Prelid2|77619|PRELI domain containing 2	BC120711|Prelid2|77619|PRELI domain containing 2	BC145035|Prelid2|77619|PRELI domain containing 2	NM_029942|Prelid2|77619|PRELI domain containing 2	AK021193|Prelid2|77619|PRELI domain containing 2
mm9_v1_chr4_+_126846429_126846514	0.0770614	HNF4A_NR2F1,2.p2	BC057615|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3	NM_198618|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr2_-_92210955_92211192	0.0768729	HNF4A_NR2F1,2.p2	HM141800|Gyltl1b|228366|glycosyltransferase-like 1B	AK220181|Gyltl1b|228366|glycosyltransferase-like 1B	BC096655|Gyltl1b|228366|glycosyltransferase-like 1B	BC116715|Gyltl1b|228366|glycosyltransferase-like 1B	AK077630|Gyltl1b|228366|glycosyltransferase-like 1B	BC058199|Gyltl1b|228366|glycosyltransferase-like 1B	AK081797|Gyltl1b|228366|glycosyltransferase-like 1B	AY742914|Gyltl1b|228366|glycosyltransferase-like 1B	AY742915|Gyltl1b|228366|glycosyltransferase-like 1B	NM_001166633|Gyltl1b|228366|glycosyltransferase-like 1B	NM_172670|Gyltl1b|228366|glycosyltransferase-like 1B
mm9_v1_chr10_-_7382974_7383127	0.0767958	HNF4A_NR2F1,2.p2	BC040750|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	D38023|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	M60320|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	AK006162|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	BC058966|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	BC049613|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
mm9_v1_chr9_-_121825407_121825416	0.0767574	HNF4A_NR2F1,2.p2	BC049969|Cyp8b1|13124|cytochrome P450, family 8, subfamily b, polypeptide 1	AF090317|Cyp8b1|13124|cytochrome P450, family 8, subfamily b, polypeptide 1	BC010973|Cyp8b1|13124|cytochrome P450, family 8, subfamily b, polypeptide 1	BC010974|Cyp8b1|13124|cytochrome P450, family 8, subfamily b, polypeptide 1
mm9_v1_chr7_+_29610281_29610375	0.0766398	HNF4A_NR2F1,2.p2	BC087924|Ech1|51798|enoyl coenzyme A hydratase 1, peroxisomal	AF030343|Ech1|51798|enoyl coenzyme A hydratase 1, peroxisomal	BC068112|Ech1|51798|enoyl coenzyme A hydratase 1, peroxisomal	NM_016772|Ech1|51798|enoyl coenzyme A hydratase 1, peroxisomal	AK088495|Ech1|51798|enoyl coenzyme A hydratase 1, peroxisomal
mm9_v1_chr6_-_13627853_13628000	0.0760861	HNF4A_NR2F1,2.p2	BC145708|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	BC145710|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK170526|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	AK046745|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene	NM_175312|B630005N14Rik|101148|RIKEN cDNA B630005N14 gene
mm9_v1_chr10_+_128227964_128228056	0.076038	HNF4A_NR2F1,2.p2	AK079924|Mmp19|58223|matrix metallopeptidase 19	NM_001164197|Mmp19|58223|matrix metallopeptidase 19	AK080125|Mmp19|58223|matrix metallopeptidase 19	AK136517|Mmp19|58223|matrix metallopeptidase 19	NM_021412|Mmp19|58223|matrix metallopeptidase 19	AK154863|Mmp19|58223|matrix metallopeptidase 19	AF155221|Mmp19|58223|matrix metallopeptidase 19	AF162446|Mmp19|58223|matrix metallopeptidase 19	BC112966|Mmp19|58223|matrix metallopeptidase 19	AF153199|Mmp19|58223|matrix metallopeptidase 19
mm9_v1_chr7_+_135047661_135047661	0.075976	HNF4A_NR2F1,2.p2	AK075602|Bckdk|12041|branched chain ketoacid dehydrogenase kinase
mm9_v1_chr2_+_128793137_128793209	0.0759302	HNF4A_NR2F1,2.p2	AK050503|Zc3h6|78751|zinc finger CCCH type containing 6	NM_178404|Zc3h6|78751|zinc finger CCCH type containing 6	AK013610|Zc3h6|78751|zinc finger CCCH type containing 6	AK019345|Zc3h6|78751|zinc finger CCCH type containing 6	AK039171|Zc3h6|78751|zinc finger CCCH type containing 6	AK014766|Zc3h6|78751|zinc finger CCCH type containing 6	BC058173|Zc3h6|78751|zinc finger CCCH type containing 6
mm9_v1_chr18_+_78033276_78033456	0.0758911	HNF4A_NR2F1,2.p2	AK154724|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	NM_013831|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	AK033996|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	AK157994|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	AK132418|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	BC002123|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	AK154284|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	BC057654|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	CT010308|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2	Y18101|Pstpip2|19201|proline-serine-threonine phosphatase-interacting protein 2
mm9_v1_chr7_-_148086285_148086315	0.0757687	HNF4A_NR2F1,2.p2	AK003116|Cox8b|12869|cytochrome c oxidase, subunit VIIIb	BC027531|Cox8b|12869|cytochrome c oxidase, subunit VIIIb	U15541|Cox8b|12869|cytochrome c oxidase, subunit VIIIb	BC086930|Cox8b|12869|cytochrome c oxidase, subunit VIIIb
mm9_v1_chr7_-_31241977_31242078	0.0754774	HNF4A_NR2F1,2.p2	BC052773|Kirrel2|243911|kin of IRRE like 2 (Drosophila)	BC158021|Kirrel2|243911|kin of IRRE like 2 (Drosophila)
mm9_v1_chr3_+_89577436_89577810	0.0753841	HNF4A_NR2F1,2.p2	NM_027315|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY112699|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AY945937|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1	AK146707|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr8_-_95603838_95603915	0.0752107	HNF4A_NR2F1,2.p2	NM_001081372|Ces1b|382044|carboxylesterase 1B
mm9_v1_chrX_+_96331496_96331657	0.0751693	HNF4A_NR2F1,2.p2	BC021656|Efnb1|13641|ephrin B1	BC006797|Efnb1|13641|ephrin B1	Z48781|Efnb1|13641|ephrin B1	BC018572|Efnb1|13641|ephrin B1
mm9_v1_chr11_+_121282686_121282751	0.0744968	HNF4A_NR2F1,2.p2	NM_181420|Fn3krp|238024|fructosamine 3 kinase related protein	AY360466|Fn3krp|238024|fructosamine 3 kinase related protein	AK034934|Fn3krp|238024|fructosamine 3 kinase related protein	BC032265|Fn3krp|238024|fructosamine 3 kinase related protein
mm9_v1_chr9_+_50425460_50425487	0.074474	HNF4A_NR2F1,2.p2	BC019481|Pih1d2|72614|PIH1 domain containing 2
mm9_v1_chr2_+_17976897_17976897	0.0743321	HNF4A_NR2F1,2.p2	BC070475|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10	NM_010804|Mllt10|17354|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm9_v1_chr17_+_44914271_44914344	0.0740257	HNF4A_NR2F1,2.p2	AK050321|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	AK087935|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	AK089837|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	BC096051|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)
mm9_v1_chr11_-_93817153_93817305	0.0738513	HNF4A_NR2F1,2.p2	X68193|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK169120|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	BC086893|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK012447|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in	AK150419|Nme2|18103|non-metastatic cells 2, protein (NM23B) expressed in
mm9_v1_chr7_+_19797886_19797886	0.0737738	HNF4A_NR2F1,2.p2	AK085829|Gpr4|319197|G protein-coupled receptor 4	NM_175668|Gpr4|319197|G protein-coupled receptor 4
mm9_v1_chr2_+_72123693_72123785	0.0737456	HNF4A_NR2F1,2.p2	AK132186|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	NM_023057|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	NM_001164791|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene	NM_178084|B230120H23Rik|65964|RIKEN cDNA B230120H23 gene
mm9_v1_chr9_-_107888185_107888220	0.0733864	HNF4A_NR2F1,2.p2	BC115538|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK020090|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene	AK076092|6230427J02Rik|68176|RIKEN cDNA 6230427J02 gene
mm9_v1_chr10_-_60215512_60215513	0.0731792	HNF4A_NR2F1,2.p2	BC137864|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3	BC144983|Slc29a3|71279|solute carrier family 29 (nucleoside transporters), member 3
mm9_v1_chr17_-_87657365_87657420	0.0731683	HNF4A_NR2F1,2.p2	GQ896355|Mcfd2|193813|multiple coagulation factor deficiency 2	GQ896356|Mcfd2|193813|multiple coagulation factor deficiency 2	AK206943|Mcfd2|193813|multiple coagulation factor deficiency 2
mm9_v1_chr11_-_69227176_69227176	0.0731514	HNF4A_NR2F1,2.p2	NM_001017426|Kdm6b|216850|KDM1 lysine (K)-specific demethylase 6B
mm9_v1_chr1_-_167564449_167564681	0.0731375	HNF4A_NR2F1,2.p2	AK192253|Mpzl1|68481|myelin protein zero-like 1	AK192408|Mpzl1|68481|myelin protein zero-like 1	AK193736|Mpzl1|68481|myelin protein zero-like 1	AK197743|Mpzl1|68481|myelin protein zero-like 1	AY764248|Mpzl1|68481|myelin protein zero-like 1	BC072563|Mpzl1|68481|myelin protein zero-like 1	AK090278|Mpzl1|68481|myelin protein zero-like 1	AK169385|Mpzl1|68481|myelin protein zero-like 1	AY764247|Mpzl1|68481|myelin protein zero-like 1	NM_001001880|Mpzl1|68481|myelin protein zero-like 1	NM_001083897|Mpzl1|68481|myelin protein zero-like 1
mm9_v1_chr17_-_35971652_35971809	0.072735	HNF4A_NR2F1,2.p2	AK080778|Tubb5|22154|tubulin, beta 5	AK088137|Tubb5|22154|tubulin, beta 5
mm9_v1_chr6_-_145813859_145813899	0.0724406	HNF4A_NR2F1,2.p2	AB044090|Bhlhe41|79362|basic helix-loop-helix family, member e41	NM_024469|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC023231|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC051555|Bhlhe41|79362|basic helix-loop-helix family, member e41	BC037742|Bhlhe41|79362|basic helix-loop-helix family, member e41
mm9_v1_chr19_+_41557475_41557518	0.0723656	HNF4A_NR2F1,2.p2	AK041621|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chr4_-_138686643_138686784	0.0722803	HNF4A_NR2F1,2.p2	AK159039|2310028O11Rik|433771|RIKEN cDNA 2310028O11 gene
mm9_v1_chr8_-_113551591_113551618	0.0722646	HNF4A_NR2F1,2.p2	BC025594|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr15_-_58614642_58614788	0.071681	HNF4A_NR2F1,2.p2	AK011623|Tmem65|74868|transmembrane protein 65
mm9_v1_chr8_-_87370795_87370829	0.0715764	HNF4A_NR2F1,2.p2	NM_007591|Calr|12317|calreticulin
mm9_v1_chr18_+_74379056_74379159	0.0713683	HNF4A_NR2F1,2.p2	AK215977|Cxxc1|74322|CXXC finger 1 (PHD domain)
mm9_v1_chr9_-_4795830_4795938	0.0713596	HNF4A_NR2F1,2.p2	AK135034|Gria4|14802|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm9_v1_chr6_+_117791197_117791271	0.0709857	HNF4A_NR2F1,2.p2	BC048843|Zfp637|232337|zinc finger protein 637	NM_177684|Zfp637|232337|zinc finger protein 637	BC021601|Zfp637|232337|zinc finger protein 637
mm9_v1_chr3_+_59835700_59835727	0.0706591	HNF4A_NR2F1,2.p2	NM_023383|Aadac|67758|arylacetamide deacetylase (esterase)	AK008244|Aadac|67758|arylacetamide deacetylase (esterase)	BC054823|Aadac|67758|arylacetamide deacetylase (esterase)	BC019999|Aadac|67758|arylacetamide deacetylase (esterase)
mm9_v1_chr16_-_85056592_85056771	0.0703501	HNF4A_NR2F1,2.p2	M24397|App|11820|amyloid beta (A4) precursor protein	AK161854|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr2_+_90894161_90894340	0.0702617	HNF4A_NR2F1,2.p2	NM_008948|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	AK167002|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	AK167061|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	AK150189|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	D49686|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3	BC005783|Psmc3|19182|proteasome (prosome, macropain) 26S subunit, ATPase 3
mm9_v1_chr7_+_94395160_94395355	0.0700406	HNF4A_NR2F1,2.p2	AK169304|Nox4|50490|NADPH oxidase 4	AK087097|Nox4|50490|NADPH oxidase 4	AF261944|Nox4|50490|NADPH oxidase 4	AF276957|Nox4|50490|NADPH oxidase 4	AK050371|Nox4|50490|NADPH oxidase 4	AK085509|Nox4|50490|NADPH oxidase 4	AK149398|Nox4|50490|NADPH oxidase 4	AK149455|Nox4|50490|NADPH oxidase 4	AK149492|Nox4|50490|NADPH oxidase 4	NM_015760|Nox4|50490|NADPH oxidase 4	AK052905|Nox4|50490|NADPH oxidase 4	AB041034|Nox4|50490|NADPH oxidase 4	AB042745|Nox4|50490|NADPH oxidase 4	AF218723|Nox4|50490|NADPH oxidase 4	BC138918|Nox4|50490|NADPH oxidase 4	BC145462|Nox4|50490|NADPH oxidase 4	BC021378|Nox4|50490|NADPH oxidase 4	EU861989|Nox4|50490|NADPH oxidase 4
mm9_v1_chr5_+_98758322_98758388	0.0700319	HNF4A_NR2F1,2.p2	BC049770|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	NM_001024614|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene	AK005711|1700007G11Rik|75784|RIKEN cDNA 1700007G11 gene
mm9_v1_chr17_+_28883912_28883997	0.07	HNF4A_NR2F1,2.p2	AK177608|Mapk14|26416|mitogen-activated protein kinase 14
mm9_v1_chr1_-_175266945_175266952	0.069745	HNF4A_NR2F1,2.p2	AK031927|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr11_+_119464218_119464296	0.0697088	HNF4A_NR2F1,2.p2	AK161011|Rptor|74370|regulatory associated protein of MTOR, complex 1
mm9_v1_chr7_+_52960702_52960765	0.0696842	HNF4A_NR2F1,2.p2	AK140243|Dbp|13170|D site albumin promoter binding protein
mm9_v1_chr1_-_75132977_75133049	0.0696031	HNF4A_NR2F1,2.p2	AK209717|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	AK183285|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene	AK180897|1810031K17Rik|69171|RIKEN cDNA 1810031K17 gene
mm9_v1_chr2_-_164737043_164737249	0.069576	HNF4A_NR2F1,2.p2	AK157577|Zfp335|329559|zinc finger protein 335	BC062921|Zfp335|329559|zinc finger protein 335	NM_199027|Zfp335|329559|zinc finger protein 335
mm9_v1_chr5_+_35384213_35384292	0.06944	HNF4A_NR2F1,2.p2	AK165433|Hgfac|54426|hepatocyte growth factor activator	AK144554|Hgfac|54426|hepatocyte growth factor activator	BC019376|Hgfac|54426|hepatocyte growth factor activator	AK149522|Hgfac|54426|hepatocyte growth factor activator	AF099017|Hgfac|54426|hepatocyte growth factor activator	AF224724|Hgfac|54426|hepatocyte growth factor activator	AK075718|Hgfac|54426|hepatocyte growth factor activator
mm9_v1_chr7_+_108966826_108966826	0.0693276	HNF4A_NR2F1,2.p2	NM_008887|Phox2a|11859|paired-like homeobox 2a
mm9_v1_chr9_-_26613989_26614018	0.0691416	HNF4A_NR2F1,2.p2	AK143057|Glb1l2|244757|galactosidase, beta 1-like 2	BC038479|Glb1l2|244757|galactosidase, beta 1-like 2	NM_153803|Glb1l2|244757|galactosidase, beta 1-like 2	AK033400|Glb1l2|244757|galactosidase, beta 1-like 2
mm9_v1_chr18_+_74019038_74019047	0.0690788	HNF4A_NR2F1,2.p2	AY243876|Mro|71263|maestro	NM_027741|Mro|71263|maestro	AK015725|Mro|71263|maestro
mm9_v1_chr9_+_44215727_44215760	0.0688172	HNF4A_NR2F1,2.p2	
mm9_v1_chr16_+_18071099_18071220	0.0685162	HNF4A_NR2F1,2.p2	AK187760|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK219346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK219449|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr16_-_98072833_98072833	0.0684477	HNF4A_NR2F1,2.p2	NM_144789|Prdm15|114604|PR domain containing 15
mm9_v1_chr2_-_130985746_130985825	0.0682063	HNF4A_NR2F1,2.p2	AK003406|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	NM_026091|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	BC071212|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene	AK006622|1700037H04Rik|67326|RIKEN cDNA 1700037H04 gene
mm9_v1_chr10_-_79785786_79785871	0.0678998	HNF4A_NR2F1,2.p2	BC052535|Pcsk4|18551|proprotein convertase subtilisin/kexin type 4
mm9_v1_chrX_+_54043764_54043779	0.0676968	HNF4A_NR2F1,2.p2	BC055725|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr17_-_36408313_36408377	0.0676643	HNF4A_NR2F1,2.p2	AK220298|Trim39|79263|tripartite motif-containing 39	AK145861|Trim39|79263|tripartite motif-containing 39	AK053507|Trim39|79263|tripartite motif-containing 39	NM_178281|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr11_-_61080588_61080704	0.067664	HNF4A_NR2F1,2.p2	BC003797|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	U14390|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK079571|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK079639|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK148462|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK163040|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK169157|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK170251|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	NM_007437|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK086262|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK051219|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK078243|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK170195|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK152156|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK152735|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK152800|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK140932|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2	AK159246|Aldh3a2|11671|aldehyde dehydrogenase family 3, subfamily A2
mm9_v1_chr14_-_31756446_31756482	0.0674264	HNF4A_NR2F1,2.p2	BC013465|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	X70391|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	BC028814|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	AK149500|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1	NM_008406|Itih1|16424|inter-alpha trypsin inhibitor, heavy chain 1
mm9_v1_chr12_-_114238815_114238927	0.0672891	HNF4A_NR2F1,2.p2	NM_028193|Brf1|72308|BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
mm9_v1_chr2_-_25978328_25978339	0.0664667	HNF4A_NR2F1,2.p2	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr6_+_86315639_86315728	0.0662234	HNF4A_NR2F1,2.p2	BC103775|Fam136a|66488|family with sequence similarity 136, member A	BC024049|Fam136a|66488|family with sequence similarity 136, member A	NM_025591|Fam136a|66488|family with sequence similarity 136, member A	AK008550|Fam136a|66488|family with sequence similarity 136, member A	AK005280|Fam136a|66488|family with sequence similarity 136, member A	AK141279|Fam136a|66488|family with sequence similarity 136, member A	CT010180|Fam136a|66488|family with sequence similarity 136, member A	BC013621|Fam136a|66488|family with sequence similarity 136, member A
mm9_v1_chr6_-_136123521_136123528	0.0661574	HNF4A_NR2F1,2.p2	AJ459261|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AJ459262|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AJ459263|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	AK002963|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)	NM_008171|Grin2b|14812|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm9_v1_chr2_+_32576591_32576654	0.065967	HNF4A_NR2F1,2.p2	AB043953|Sh2d3c|27387|SH2 domain containing 3C	NM_013781|Sh2d3c|27387|SH2 domain containing 3C	BC113203|Sh2d3c|27387|SH2 domain containing 3C	AF168364|Sh2d3c|27387|SH2 domain containing 3C	AK155165|Sh2d3c|27387|SH2 domain containing 3C	AK172072|Sh2d3c|27387|SH2 domain containing 3C
mm9_v1_chr18_-_56722155_56722190	0.0658662	HNF4A_NR2F1,2.p2	AK189373|Aldh7a1|110695|aldehyde dehydrogenase family 7, member A1
mm9_v1_chr14_-_73785067_73785067	0.0656084	HNF4A_NR2F1,2.p2	AK005125|Itm2b|16432|integral membrane protein 2B	AK152731|Itm2b|16432|integral membrane protein 2B	AK159962|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr8_+_87396009_87396156	0.0653793	HNF4A_NR2F1,2.p2	AK005954|Syce2|71846|synaptonemal complex central element protein 2	NM_001168246|Syce2|71846|synaptonemal complex central element protein 2	NM_027954|Syce2|71846|synaptonemal complex central element protein 2	BC132534|Syce2|71846|synaptonemal complex central element protein 2	BC094628|Syce2|71846|synaptonemal complex central element protein 2	AK167332|Syce2|71846|synaptonemal complex central element protein 2	NM_001168244|Syce2|71846|synaptonemal complex central element protein 2
mm9_v1_chr19_-_28838026_28838038	0.0651303	HNF4A_NR2F1,2.p2	NM_001177391|Gm6788|627788|predicted gene 6788
mm9_v1_chr17_-_25411224_25411258	0.0649954	HNF4A_NR2F1,2.p2	AK005058|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK088508|Ube2i|22196|ubiquitin-conjugating enzyme E2I	U94402|Ube2i|22196|ubiquitin-conjugating enzyme E2I	NM_011665|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr8_-_64069935_64069941	0.0649683	HNF4A_NR2F1,2.p2	AK087573|Palld|72333|palladin, cytoskeletal associated protein	AK149663|Palld|72333|palladin, cytoskeletal associated protein
mm9_v1_chr4_+_116230293_116230350	0.0649683	HNF4A_NR2F1,2.p2	AK037224|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK133761|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	AK019942|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	BC066034|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1	NM_029868|Gpbp1l1|77110|GC-rich promoter binding protein 1-like 1
mm9_v1_chr1_-_174221511_174221528	0.0648513	HNF4A_NR2F1,2.p2	BC041774|Atp1a2|98660|ATPase, Na+/K+ transporting, alpha 2 polypeptide
mm9_v1_chr19_-_6982516_6982562	0.0647389	HNF4A_NR2F1,2.p2	AK209224|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr1_+_75233276_75233316	0.0647092	HNF4A_NR2F1,2.p2	NM_001159885|Dnajb2|56812|DnaJ (Hsp40) homolog, subfamily B, member 2
mm9_v1_chr7_-_20043842_20043842	0.0646795	HNF4A_NR2F1,2.p2	AY151083|Mark4|232944|MAP/microtubule affinity-regulating kinase 4	NM_172279|Mark4|232944|MAP/microtubule affinity-regulating kinase 4
mm9_v1_chr7_+_52105323_52105411	0.0646057	HNF4A_NR2F1,2.p2	BC002180|Akt1s1|67605|AKT1 substrate 1 (proline-rich)
mm9_v1_chr11_-_60013141_60013246	0.0645815	HNF4A_NR2F1,2.p2	AK040663|Srebf1|20787|sterol regulatory element binding transcription factor 1
mm9_v1_chr3_+_89070473_89070560	0.0640403	HNF4A_NR2F1,2.p2	AK003223|Dpm3|68563|dolichyl-phosphate mannosyltransferase polypeptide 3	NM_026767|Dpm3|68563|dolichyl-phosphate mannosyltransferase polypeptide 3	BC037761|Dpm3|68563|dolichyl-phosphate mannosyltransferase polypeptide 3
mm9_v1_chr8_-_114400574_114400649	0.0640321	HNF4A_NR2F1,2.p2	AK018496|Tmem170|66817|transmembrane protein 170	NM_025781|Tmem170|66817|transmembrane protein 170	AK007926|Tmem170|66817|transmembrane protein 170	BC139377|Tmem170|66817|transmembrane protein 170	BC145964|Tmem170|66817|transmembrane protein 170
mm9_v1_chr10_-_127846807_127846878	0.0639807	HNF4A_NR2F1,2.p2	BC026942|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B	DQ158906|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B	NM_027257|Obfc2b|69917|oligonucleotide/oligosaccharide-binding fold containing 2B
mm9_v1_chr2_-_155937440_155937537	0.0637854	HNF4A_NR2F1,2.p2	
mm9_v1_chr3_+_95697820_95698061	0.0637618	HNF4A_NR2F1,2.p2	AK148400|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC057865|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	AK152334|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC012406|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	NM_146104|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC024111|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	NM_146134|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)
mm9_v1_chrX_+_103382432_103382595	0.0637261	HNF4A_NR2F1,2.p2	NM_008828|Pgk1|18655|phosphoglycerate kinase 1	AK145846|Pgk1|18655|phosphoglycerate kinase 1	AK133877|Pgk1|18655|phosphoglycerate kinase 1	AK164440|Pgk1|18655|phosphoglycerate kinase 1	BC108372|Pgk1|18655|phosphoglycerate kinase 1	BC023819|Pgk1|18655|phosphoglycerate kinase 1	BC032167|Pgk1|18655|phosphoglycerate kinase 1	AK167441|Pgk1|18655|phosphoglycerate kinase 1	AK167459|Pgk1|18655|phosphoglycerate kinase 1	AK167710|Pgk1|18655|phosphoglycerate kinase 1	BC083355|Pgk1|18655|phosphoglycerate kinase 1	M15668|Pgk1|18655|phosphoglycerate kinase 1	EF437325|Pgk1|18655|phosphoglycerate kinase 1
mm9_v1_chr1_-_95531961_95532109	0.0636423	HNF4A_NR2F1,2.p2	AF004934|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr8_+_11313002_11313023	0.063471	HNF4A_NR2F1,2.p2	J04695|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chr9_-_57531425_57531441	0.0633643	HNF4A_NR2F1,2.p2	X04283|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	BC018298|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr17_+_27977018_27977091	0.0633041	HNF4A_NR2F1,2.p2	NM_011432|Snrpc|20630|U1 small nuclear ribonucleoprotein C	AK137213|Snrpc|20630|U1 small nuclear ribonucleoprotein C	AK168973|Snrpc|20630|U1 small nuclear ribonucleoprotein C	BC008243|Snrpc|20630|U1 small nuclear ribonucleoprotein C	BC092266|Snrpc|20630|U1 small nuclear ribonucleoprotein C	U70315|Snrpc|20630|U1 small nuclear ribonucleoprotein C	X96767|Snrpc|20630|U1 small nuclear ribonucleoprotein C
mm9_v1_chr4_-_150418667_150418697	0.0632653	HNF4A_NR2F1,2.p2	AK036345|Per3|18628|period homolog 3 (Drosophila)	AF050182|Per3|18628|period homolog 3 (Drosophila)
mm9_v1_chr19_-_32177613_32177629	0.0631802	HNF4A_NR2F1,2.p2	BC137898|Asah2|54447|N-acylsphingosine amidohydrolase 2	BC145016|Asah2|54447|N-acylsphingosine amidohydrolase 2	AB037181|Asah2|54447|N-acylsphingosine amidohydrolase 2	NM_018830|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr18_+_63112372_63112770	0.0631723	HNF4A_NR2F1,2.p2	AK190259|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191643|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191811|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191857|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK192996|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK198042|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK214514|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AB023957|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC065780|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1
mm9_v1_chr15_+_76173936_76173991	0.0631228	HNF4A_NR2F1,2.p2	AK011288|Cyc1|66445|cytochrome c-1	NM_025567|Cyc1|66445|cytochrome c-1	AK151299|Cyc1|66445|cytochrome c-1	AK170272|Cyc1|66445|cytochrome c-1	BC005620|Cyc1|66445|cytochrome c-1	AK002815|Cyc1|66445|cytochrome c-1	BC082790|Cyc1|66445|cytochrome c-1
mm9_v1_chr2_+_25036524_25036678	0.0630642	HNF4A_NR2F1,2.p2	BC069891|Nrarp|67122|Notch-regulated ankyrin repeat protein	AK012426|Nrarp|67122|Notch-regulated ankyrin repeat protein
mm9_v1_chr6_+_116214268_116214278	0.0630152	HNF4A_NR2F1,2.p2	BC048508|Anubl1|67492|AN1, ubiquitin-like, homolog (Xenopus laevis)
mm9_v1_chr5_-_120935430_120935472	0.0628885	HNF4A_NR2F1,2.p2	AK179951|Plbd2|71772|phospholipase B domain containing 2	AK214336|Plbd2|71772|phospholipase B domain containing 2	AK215411|Plbd2|71772|phospholipase B domain containing 2	AK216450|Plbd2|71772|phospholipase B domain containing 2	AK218751|Plbd2|71772|phospholipase B domain containing 2	AK219038|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr11_+_57822347_57822565	0.0628538	HNF4A_NR2F1,2.p2	NM_028451|Larp1|73158|La ribonucleoprotein domain family, member 1
mm9_v1_chr7_-_29100168_29100268	0.0627863	HNF4A_NR2F1,2.p2	AK192346|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)	AK214897|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr12_-_86715612_86715842	0.062583	HNF4A_NR2F1,2.p2	AK150605|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152656|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC064755|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	BC085097|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK003676|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK084117|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	AK152643|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)	NM_026775|Tmed10|68581|transmembrane emp24-like trafficking protein 10 (yeast)
mm9_v1_chr17_-_74715422_74715554	0.0625828	HNF4A_NR2F1,2.p2	AK214978|Dpy30|66310|dpy-30 homolog (C. elegans)	AK011643|Dpy30|66310|dpy-30 homolog (C. elegans)	AK003688|Dpy30|66310|dpy-30 homolog (C. elegans)	NM_001146224|Dpy30|66310|dpy-30 homolog (C. elegans)
mm9_v1_chr7_+_149646740_149646803	0.0623546	HNF4A_NR2F1,2.p2	BC044736|Lsp1|16985|lymphocyte specific 1	AK003081|Lsp1|16985|lymphocyte specific 1	M89956|Lsp1|16985|lymphocyte specific 1	NM_001136071|Lsp1|16985|lymphocyte specific 1	S74179|Lsp1|16985|lymphocyte specific 1
mm9_v1_chr6_+_125502943_125502970	0.0620606	HNF4A_NR2F1,2.p2	AK157296|Vwf|22371|Von Willebrand factor homolog
mm9_v1_chr5_-_104406406_104406437	0.0619646	HNF4A_NR2F1,2.p2	NM_001163486|Hsd17b13|243168|hydroxysteroid (17-beta) dehydrogenase 13	NM_198030|Hsd17b13|243168|hydroxysteroid (17-beta) dehydrogenase 13
mm9_v1_chr1_+_174065263_174065366	0.0612796	HNF4A_NR2F1,2.p2	AK218140|Pex19|19298|peroxisomal biogenesis factor 19
mm9_v1_chr4_-_118846460_118846468	0.0610403	HNF4A_NR2F1,2.p2	AK032431|Zfp691|195522|zinc finger protein 691	AK171649|Zfp691|195522|zinc finger protein 691	NM_001145935|Zfp691|195522|zinc finger protein 691	NM_183140|Zfp691|195522|zinc finger protein 691
mm9_v1_chr9_+_20820403_20820487	0.0609603	HNF4A_NR2F1,2.p2	NM_010493|Icam1|15894|intercellular adhesion molecule 1	AK149748|Icam1|15894|intercellular adhesion molecule 1	AK150003|Icam1|15894|intercellular adhesion molecule 1	AK150327|Icam1|15894|intercellular adhesion molecule 1	AK151227|Icam1|15894|intercellular adhesion molecule 1	AK151681|Icam1|15894|intercellular adhesion molecule 1	AK152155|Icam1|15894|intercellular adhesion molecule 1	AK152527|Icam1|15894|intercellular adhesion molecule 1	AK152530|Icam1|15894|intercellular adhesion molecule 1	AK152556|Icam1|15894|intercellular adhesion molecule 1	AK156417|Icam1|15894|intercellular adhesion molecule 1	AK172321|Icam1|15894|intercellular adhesion molecule 1	AK171502|Icam1|15894|intercellular adhesion molecule 1	AK149781|Icam1|15894|intercellular adhesion molecule 1	AK149945|Icam1|15894|intercellular adhesion molecule 1	AK150049|Icam1|15894|intercellular adhesion molecule 1	AK150057|Icam1|15894|intercellular adhesion molecule 1	AK168275|Icam1|15894|intercellular adhesion molecule 1	BC008626|Icam1|15894|intercellular adhesion molecule 1	X16624|Icam1|15894|intercellular adhesion molecule 1	X52264|Icam1|15894|intercellular adhesion molecule 1	CT010246|Icam1|15894|intercellular adhesion molecule 1	CT010302|Icam1|15894|intercellular adhesion molecule 1	X54331|Icam1|15894|intercellular adhesion molecule 1
mm9_v1_chr18_+_36526187_36526274	0.0609241	HNF4A_NR2F1,2.p2	AK003470|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene
mm9_v1_chr16_+_95924061_95924067	0.0607564	HNF4A_NR2F1,2.p2	AK128933|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK152750|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK143687|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK144974|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK151315|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153339|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153478|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr16_-_78576914_78576958	0.0606656	HNF4A_NR2F1,2.p2	AK044670|D16Ertd472e|67102|DNA segment, Chr 16, ERATO Doi 472, expressed
mm9_v1_chr9_+_49148731_49148766	0.060526	HNF4A_NR2F1,2.p2	X55674|Drd2|13489|dopamine receptor D2	BC105663|Drd2|13489|dopamine receptor D2	BC105664|Drd2|13489|dopamine receptor D2	BC105665|Drd2|13489|dopamine receptor D2	BC105666|Drd2|13489|dopamine receptor D2	NM_010077|Drd2|13489|dopamine receptor D2
mm9_v1_chr5_+_31167731_31167889	0.0604955	HNF4A_NR2F1,2.p2	AK210919|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr7_+_73205419_73205451	0.0604827	HNF4A_NR2F1,2.p2	AK005256|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK151800|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK153502|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK152546|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'	AK088438|Snrpa1|68981|small nuclear ribonucleoprotein polypeptide A'
mm9_v1_chr14_-_66899764_66899954	0.0603883	HNF4A_NR2F1,2.p2	AK158980|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK054002|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK150105|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK041878|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	AK088696|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162365|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_172498|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chr11_+_70353656_70353766	0.0601002	HNF4A_NR2F1,2.p2	NM_008876|Pld2|18806|phospholipase D2
mm9_v1_chr9_+_83728331_83728347	0.0599932	HNF4A_NR2F1,2.p2	AX775731|Ttk|22137|Ttk protein kinase	M86377|Ttk|22137|Ttk protein kinase
mm9_v1_chr8_+_114061310_114061413	0.0597615	HNF4A_NR2F1,2.p2	AK078819|Znrf1|170737|zinc and ring finger 1	AK076756|Znrf1|170737|zinc and ring finger 1	AK216619|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr11_+_84684395_84684447	0.0596469	HNF4A_NR2F1,2.p2	AK143696|Gm10374|100191074|predicted gene 10374
mm9_v1_chr7_-_27963760_27963951	0.0593332	HNF4A_NR2F1,2.p2	AB232592|Rab4b|19342|RAB4B, member RAS oncogene family	AK140513|Rab4b|19342|RAB4B, member RAS oncogene family	BC007147|Rab4b|19342|RAB4B, member RAS oncogene family	AF408432|Rab4b|19342|RAB4B, member RAS oncogene family	BC096654|Rab4b|19342|RAB4B, member RAS oncogene family	AK005314|Rab4b|19342|RAB4B, member RAS oncogene family	NM_029391|Rab4b|19342|RAB4B, member RAS oncogene family	AK170552|Rab4b|19342|RAB4B, member RAS oncogene family
mm9_v1_chr4_+_133228633_133228644	0.0593186	HNF4A_NR2F1,2.p2	AK006675|1700041L08Rik|73315|RIKEN cDNA 1700041L08 gene
mm9_v1_chr2_-_77654669_77654872	0.059161	HNF4A_NR2F1,2.p2	AK079322|Zfp385b|241494|zinc finger protein 385B	AK149352|Zfp385b|241494|zinc finger protein 385B	AK046798|Zfp385b|241494|zinc finger protein 385B	NM_178723|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr17_-_45724536_45724608	0.0588932	HNF4A_NR2F1,2.p2	AK198320|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK212529|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr4_+_129138915_129138922	0.0587926	HNF4A_NR2F1,2.p2	BC049111|Bsdc1|100383|BSD domain containing 1	NM_133889|Bsdc1|100383|BSD domain containing 1
mm9_v1_chr15_+_101933364_101933418	0.0587417	HNF4A_NR2F1,2.p2	AK147789|Tenc1|209039|tensin like C1 domain-containing phosphatase	AK147941|Tenc1|209039|tensin like C1 domain-containing phosphatase	BC042190|Tenc1|209039|tensin like C1 domain-containing phosphatase	NM_153533|Tenc1|209039|tensin like C1 domain-containing phosphatase
mm9_v1_chr15_+_76369247_76369393	0.0586782	HNF4A_NR2F1,2.p2	AK161447|Gpr172b|52710|G protein-coupled receptor 172B	AK142597|Gpr172b|52710|G protein-coupled receptor 172B	AK080449|Gpr172b|52710|G protein-coupled receptor 172B	BC016264|Gpr172b|52710|G protein-coupled receptor 172B	AK152335|Gpr172b|52710|G protein-coupled receptor 172B	AK029579|Gpr172b|52710|G protein-coupled receptor 172B	NM_029643|Gpr172b|52710|G protein-coupled receptor 172B	AK008081|Gpr172b|52710|G protein-coupled receptor 172B	AK032015|Gpr172b|52710|G protein-coupled receptor 172B
mm9_v1_chr8_-_97441937_97441997	0.0584879	HNF4A_NR2F1,2.p2	AK144530|Ccdc102a|234582|coiled-coil domain containing 102A	AK165668|Ccdc102a|234582|coiled-coil domain containing 102A	NM_001033533|Ccdc102a|234582|coiled-coil domain containing 102A
mm9_v1_chr15_+_80085613_80085722	0.0580623	HNF4A_NR2F1,2.p2	AK003001|Atf4|11911|activating transcription factor 4	NM_009716|Atf4|11911|activating transcription factor 4	BC085169|Atf4|11911|activating transcription factor 4
mm9_v1_chr4_-_151851574_151851597	0.0580435	HNF4A_NR2F1,2.p2	BC039178|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	NM_010598|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	U31908|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr8_-_86794243_86794302	0.0579212	HNF4A_NR2F1,2.p2	AK015911|Ccdc130|67736|coiled-coil domain containing 130	NM_026350|Ccdc130|67736|coiled-coil domain containing 130
mm9_v1_chr5_+_136259172_136259218	0.0576026	HNF4A_NR2F1,2.p2	DQ402950|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)
mm9_v1_chr9_-_75257067_75257210	0.0575884	HNF4A_NR2F1,2.p2	NM_027418|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr5_-_87355527_87355556	0.0575855	HNF4A_NR2F1,2.p2	BC027200|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	NM_152811|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK004971|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1	AK050435|Ugt2b1|71773|UDP glucuronosyltransferase 2 family, polypeptide B1
mm9_v1_chr8_-_90483124_90483239	0.0575666	HNF4A_NR2F1,2.p2	BC079586|Zfp423|94187|zinc finger protein 423	BC139028|Zfp423|94187|zinc finger protein 423	BC139030|Zfp423|94187|zinc finger protein 423
mm9_v1_chr2_+_91512033_91512158	0.0573085	HNF4A_NR2F1,2.p2	AK083702|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr11_-_103611082_103611134	0.0572847	HNF4A_NR2F1,2.p2	AF469004|Wnt9b|22412|wingless-type MMTV integration site 9B	AB073819|Wnt9b|22412|wingless-type MMTV integration site 9B	BC110482|Wnt9b|22412|wingless-type MMTV integration site 9B	AK052708|Wnt9b|22412|wingless-type MMTV integration site 9B	NM_011719|Wnt9b|22412|wingless-type MMTV integration site 9B
mm9_v1_chr5_+_108026391_108026398	0.0571396	HNF4A_NR2F1,2.p2	AK049889|Rpap2|231571|RNA polymerase II associated protein 2	NM_001163462|Rpap2|231571|RNA polymerase II associated protein 2
mm9_v1_chr5_-_34278864_34278941	0.0570455	HNF4A_NR2F1,2.p2	AF101435|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	BC038003|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK137949|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK078760|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	NM_011914|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK144173|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)	AK088384|Whsc2|24116|Wolf-Hirschhorn syndrome candidate 2 (human)
mm9_v1_chr18_+_60963495_60963509	0.0568143	HNF4A_NR2F1,2.p2	AK002232|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	AK020607|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	NM_001042605|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	NM_010545|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	BC003476|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	BC096435|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	X07129|Cd74|16149|CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)
mm9_v1_chr7_-_119302546_119302570	0.0567632	HNF4A_NR2F1,2.p2	AF177400|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AJ243964|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	AK004853|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)	NM_015814|Dkk3|50781|dickkopf homolog 3 (Xenopus laevis)
mm9_v1_chr8_-_71708077_71708126	0.0566845	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_84910387_84910514	0.0563915	HNF4A_NR2F1,2.p2	BC025657|Tnks1bp1|228140|tankyrase 1 binding protein 1
mm9_v1_chr1_-_37776633_37776680	0.0563507	HNF4A_NR2F1,2.p2	AK039052|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	BC072639|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene	NM_028096|2010300C02Rik|72097|RIKEN cDNA 2010300C02 gene
mm9_v1_chr12_-_16807691_16807691	0.056245	HNF4A_NR2F1,2.p2	NM_015764|Greb1|268527|gene regulated by estrogen in breast cancer protein
mm9_v1_chr14_-_80061875_80061890	0.0560378	HNF4A_NR2F1,2.p2	BC045152|Lect1|16840|leukocyte cell derived chemotaxin 1	AK013975|Lect1|16840|leukocyte cell derived chemotaxin 1
mm9_v1_chr2_-_167469448_167469594	0.0557984	HNF4A_NR2F1,2.p2	AK188596|Tmem189|407243|transmembrane protein 189	AK197639|Tmem189|407243|transmembrane protein 189
mm9_v1_chr4_+_132120098_132120146	0.055633	HNF4A_NR2F1,2.p2	AK032547|Ptafr|19204|platelet-activating factor receptor
mm9_v1_chr15_+_75771484_75771517	0.0556033	HNF4A_NR2F1,2.p2	AK019163|Zfp623|78834|zinc finger protein 623	BC086767|Zfp623|78834|zinc finger protein 623
mm9_v1_chr2_-_139996251_139996313	0.0555444	HNF4A_NR2F1,2.p2	BC150893|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	BC157979|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	BC010672|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	BC096029|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	AK008642|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	AK040644|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	AK076024|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	NM_001081090|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)	BC021330|Esf1|66580|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
mm9_v1_chr17_-_46841807_46841825	0.0555174	HNF4A_NR2F1,2.p2	AF316616|Ppp2r5d|21770|protein phosphatase 2, regulatory subunit B (B56), delta isoform
mm9_v1_chr1_+_91041418_91041587	0.054985	HNF4A_NR2F1,2.p2	AK185674|Sh3bp4|98402|SH3-domain binding protein 4	AK043259|Sh3bp4|98402|SH3-domain binding protein 4
mm9_v1_chr11_-_102080155_102080242	0.0549735	HNF4A_NR2F1,2.p2	AK156008|Hdac5|15184|histone deacetylase 5	AK157159|Hdac5|15184|histone deacetylase 5
mm9_v1_chr14_-_31439299_31439408	0.0549398	HNF4A_NR2F1,2.p2	BC051416|Prkcd|18753|protein kinase C, delta	M69042|Prkcd|18753|protein kinase C, delta	AK168768|Prkcd|18753|protein kinase C, delta	AK171476|Prkcd|18753|protein kinase C, delta	AK144231|Prkcd|18753|protein kinase C, delta
mm9_v1_chr6_-_5446277_5446311	0.0545082	HNF4A_NR2F1,2.p2	AJ001418|Pdk4|27273|pyruvate dehydrogenase kinase, isoenzyme 4	NM_013743|Pdk4|27273|pyruvate dehydrogenase kinase, isoenzyme 4	BC026134|Pdk4|27273|pyruvate dehydrogenase kinase, isoenzyme 4	AK004543|Pdk4|27273|pyruvate dehydrogenase kinase, isoenzyme 4	AK036818|Pdk4|27273|pyruvate dehydrogenase kinase, isoenzyme 4
mm9_v1_chr12_+_86474651_86474814	0.0544514	HNF4A_NR2F1,2.p2	AK218097|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK201762|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK202210|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK205589|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK206354|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK207941|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK209363|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK210896|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK219425|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK186759|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr10_-_116018526_116018566	0.0543743	HNF4A_NR2F1,2.p2	AK149767|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC043133|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK167834|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK202363|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK172132|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC063105|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK078121|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	AK011231|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	BC065171|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037846|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037847|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_001037848|Cnot2|72068|CCR4-NOT transcription complex, subunit 2	NM_028082|Cnot2|72068|CCR4-NOT transcription complex, subunit 2
mm9_v1_chr8_+_28196312_28196323	0.0543551	HNF4A_NR2F1,2.p2	AF378759|Gpr124|78560|G protein-coupled receptor 124	NM_054044|Gpr124|78560|G protein-coupled receptor 124	BC138451|Gpr124|78560|G protein-coupled receptor 124	BC138452|Gpr124|78560|G protein-coupled receptor 124
mm9_v1_chr4_+_115894518_115894602	0.0542364	HNF4A_NR2F1,2.p2	BC053102|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	NM_181585|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	AK031936|Pik3r3|18710|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm9_v1_chr4_-_14753720_14753733	0.0541113	HNF4A_NR2F1,2.p2	NM_152812|Otud6b|72201|OTU domain containing 6B
mm9_v1_chr13_-_74460431_74460546	0.0540565	HNF4A_NR2F1,2.p2	
mm9_v1_chr14_+_73542347_73542351	0.0539017	HNF4A_NR2F1,2.p2	AK031242|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	AK031248|Rcbtb2|105670|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm9_v1_chr3_+_107698740_107698844	0.0538795	HNF4A_NR2F1,2.p2	AK028098|Gstm5|14866|glutathione S-transferase, mu 5	NM_010360|Gstm5|14866|glutathione S-transferase, mu 5	U24428|Gstm5|14866|glutathione S-transferase, mu 5	BC008206|Gstm5|14866|glutathione S-transferase, mu 5	AK019317|Gstm5|14866|glutathione S-transferase, mu 5	AK002750|Gstm5|14866|glutathione S-transferase, mu 5
mm9_v1_chr13_-_105606826_105607032	0.0538727	HNF4A_NR2F1,2.p2	BC025437|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK077779|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK075902|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK014025|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	AK166770|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)	NM_026072|Cwc27|67285|CWC27 spliceosome-associated protein homolog (S. cerevisiae)
mm9_v1_chr4_+_101091875_101091893	0.0537336	HNF4A_NR2F1,2.p2	AK134600|Ak4|11639|adenylate kinase 4	NM_001177602|Ak4|11639|adenylate kinase 4
mm9_v1_chr17_-_36304646_36304671	0.0536223	HNF4A_NR2F1,2.p2	AB267095|Gm8909|667977|predicted gene 8909
mm9_v1_chr4_+_43460181_43460289	0.0535494	HNF4A_NR2F1,2.p2	
mm9_v1_chr15_+_44259636_44259698	0.0535061	HNF4A_NR2F1,2.p2	AK007877|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AF173297|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	BC048361|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	NM_175009|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK032957|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK162511|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK160628|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK016562|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)	AK087816|Eny2|223527|enhancer of yellow 2 homolog (Drosophila)
mm9_v1_chr10_+_7445797_7445835	0.0534557	HNF4A_NR2F1,2.p2	AK012319|Katna1|23924|katanin p60 (ATPase-containing) subunit A1	NM_011835|Katna1|23924|katanin p60 (ATPase-containing) subunit A1	AK041900|Katna1|23924|katanin p60 (ATPase-containing) subunit A1	AF153197|Katna1|23924|katanin p60 (ATPase-containing) subunit A1
mm9_v1_chr19_+_32560258_32560494	0.0534413	HNF4A_NR2F1,2.p2	AF046908|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	NM_010799|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK128911|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK017558|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK042453|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK151486|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AK080471|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1	AB041574|Minpp1|17330|multiple inositol polyphosphate histidine phosphatase 1
mm9_v1_chr12_+_113960530_113960572	0.053412	HNF4A_NR2F1,2.p2	BC050077|AW555464|217882|expressed sequence AW555464
mm9_v1_chr5_+_64203750_64203816	0.0531189	HNF4A_NR2F1,2.p2	AK159779|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	BC004797|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr11_-_119903061_119903095	0.0530734	HNF4A_NR2F1,2.p2	AF011908|Aatk|11302|apoptosis-associated tyrosine kinase	AK155100|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198787|Aatk|11302|apoptosis-associated tyrosine kinase	AK036705|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr7_+_109082609_109082687	0.0530292	HNF4A_NR2F1,2.p2	AK050670|Numa1|101706|nuclear mitotic apparatus protein 1	AK168399|Numa1|101706|nuclear mitotic apparatus protein 1
mm9_v1_chr18_-_9450104_9450192	0.0530071	HNF4A_NR2F1,2.p2	BC023321|Ccny|67974|cyclin Y	AK028696|Ccny|67974|cyclin Y	NM_026484|Ccny|67974|cyclin Y	AK014201|Ccny|67974|cyclin Y
mm9_v1_chr4_-_58219559_58219619	0.0529305	HNF4A_NR2F1,2.p2	AK045217|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chrX_+_8849858_8849881	0.0528905	HNF4A_NR2F1,2.p2	BC027097|Xk|22439|Kell blood group precursor (McLeod phenotype) homolog
mm9_v1_chr6_-_113991945_113992108	0.0525062	HNF4A_NR2F1,2.p2	AK147240|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	DQ406821|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147369|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	AK147501|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2	NM_009723|Atp2b2|11941|ATPase, Ca++ transporting, plasma membrane 2
mm9_v1_chr16_+_45158927_45158941	0.0524757	HNF4A_NR2F1,2.p2	AK005266|Atg3|67841|autophagy-related 3 (yeast)	AK011409|Atg3|67841|autophagy-related 3 (yeast)	AK150914|Atg3|67841|autophagy-related 3 (yeast)	AK159231|Atg3|67841|autophagy-related 3 (yeast)	NM_026402|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr1_-_82232392_82232507	0.052076	HNF4A_NR2F1,2.p2	AK141842|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr11_-_83462722_83462879	0.0520175	HNF4A_NR2F1,2.p2	AK153155|Ccl3|20302|chemokine (C-C motif) ligand 3	EU366956|Ccl3|20302|chemokine (C-C motif) ligand 3	BC111443|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065939|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065940|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065941|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065942|Ccl3|20302|chemokine (C-C motif) ligand 3	AF065943|Ccl3|20302|chemokine (C-C motif) ligand 3	J04491|Ccl3|20302|chemokine (C-C motif) ligand 3	X12531|Ccl3|20302|chemokine (C-C motif) ligand 3	M23447|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150590|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150634|Ccl3|20302|chemokine (C-C motif) ligand 3	AK150698|Ccl3|20302|chemokine (C-C motif) ligand 3	AK151581|Ccl3|20302|chemokine (C-C motif) ligand 3	AK152648|Ccl3|20302|chemokine (C-C motif) ligand 3	AK155058|Ccl3|20302|chemokine (C-C motif) ligand 3	NM_011337|Ccl3|20302|chemokine (C-C motif) ligand 3
mm9_v1_chr13_-_17786559_17786646	0.0519985	HNF4A_NR2F1,2.p2	BC055852|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene	NM_138654|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene	BC064756|5033411D12Rik|192136|RIKEN cDNA 5033411D12 gene
mm9_v1_chrX_+_131120189_131120255	0.0517471	HNF4A_NR2F1,2.p2	NM_019865|Rpl36a|19982|ribosomal protein L36A	AK002540|Rpl36a|19982|ribosomal protein L36A	AK170127|Rpl36a|19982|ribosomal protein L36A	AK168535|Rpl36a|19982|ribosomal protein L36A	AK012502|Rpl36a|19982|ribosomal protein L36A	AK164483|Rpl36a|19982|ribosomal protein L36A	BC027515|Rpl36a|19982|ribosomal protein L36A	BC086777|Rpl36a|19982|ribosomal protein L36A
mm9_v1_chr1_+_184695026_184695133	0.0513381	HNF4A_NR2F1,2.p2	BC021842|Susd4|96935|sushi domain containing 4	NM_144796|Susd4|96935|sushi domain containing 4	AK035779|Susd4|96935|sushi domain containing 4	AK088629|Susd4|96935|sushi domain containing 4
mm9_v1_chr16_+_20672854_20672888	0.0513304	HNF4A_NR2F1,2.p2	AK053144|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK142399|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK133903|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK139371|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	AK162698|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1	BC066038|Eif4g1|208643|eukaryotic translation initiation factor 4, gamma 1
mm9_v1_chr1_+_169238962_169239047	0.0512507	HNF4A_NR2F1,2.p2	
mm9_v1_chr3_+_63099408_63099509	0.0512031	HNF4A_NR2F1,2.p2	AK076908|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr5_-_31829057_31829098	0.0511875	HNF4A_NR2F1,2.p2	BC031447|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like	AK012134|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like
mm9_v1_chr12_-_80292805_80292827	0.0511069	HNF4A_NR2F1,2.p2	AK004413|Rdh11|17252|retinol dehydrogenase 11	NM_021557|Rdh11|17252|retinol dehydrogenase 11	AB035959|Rdh11|17252|retinol dehydrogenase 11
mm9_v1_chr5_-_137971467_137971513	0.0508827	HNF4A_NR2F1,2.p2	
mm9_v1_chr19_-_5424751_5424826	0.0505311	HNF4A_NR2F1,2.p2	AK087456|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	AK154251|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr7_-_105268002_105268002	0.0504888	HNF4A_NR2F1,2.p2	NM_008663|Myo7a|17921|myosin VIIA
mm9_v1_chrX_+_46048180_46048269	0.0501871	HNF4A_NR2F1,2.p2	AK076115|Rbmx2|209003|RNA binding motif protein, X-linked 2	NM_173376|Rbmx2|209003|RNA binding motif protein, X-linked 2	AK160232|Rbmx2|209003|RNA binding motif protein, X-linked 2	BC026976|Rbmx2|209003|RNA binding motif protein, X-linked 2	AK168018|Rbmx2|209003|RNA binding motif protein, X-linked 2
mm9_v1_chr16_+_84835131_84835235	0.0501002	HNF4A_NR2F1,2.p2	AK139916|Gabpa|14390|GA repeat binding protein, alpha	AK145446|Gabpa|14390|GA repeat binding protein, alpha	AK150455|Gabpa|14390|GA repeat binding protein, alpha
mm9_v1_chr2_+_162843166_162843193	0.0498473	HNF4A_NR2F1,2.p2	AK167194|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)
mm9_v1_chr13_+_14046883_14047111	0.0496987	HNF4A_NR2F1,2.p2	AK044785|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK151677|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK153362|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK035259|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK084275|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK085691|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK134868|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK167635|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	NM_178640|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	BC085110|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK041022|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AB116655|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	AK144880|B3galnt2|97884|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
mm9_v1_chr19_-_6996189_6996331	0.0496027	HNF4A_NR2F1,2.p2	BC034165|Esrra|26379|estrogen related receptor, alpha	BC138586|Esrra|26379|estrogen related receptor, alpha	BC171958|Esrra|26379|estrogen related receptor, alpha	U85259|Esrra|26379|estrogen related receptor, alpha	AK019222|Esrra|26379|estrogen related receptor, alpha	AK046588|Esrra|26379|estrogen related receptor, alpha	AK156371|Esrra|26379|estrogen related receptor, alpha	NM_007953|Esrra|26379|estrogen related receptor, alpha	BC039774|Esrra|26379|estrogen related receptor, alpha
mm9_v1_chr10_+_122116022_122116053	0.0495923	HNF4A_NR2F1,2.p2	
mm9_v1_chr11_-_69694379_69694486	0.0495728	HNF4A_NR2F1,2.p2	AK170258|Kctd11|216858|potassium channel tetramerisation domain containing 11	BC052734|Kctd11|216858|potassium channel tetramerisation domain containing 11	BC063052|Kctd11|216858|potassium channel tetramerisation domain containing 11	AF465352|Kctd11|216858|potassium channel tetramerisation domain containing 11	AK161602|Kctd11|216858|potassium channel tetramerisation domain containing 11	NM_153143|Kctd11|216858|potassium channel tetramerisation domain containing 11
mm9_v1_chr7_-_17501647_17501670	0.0495219	HNF4A_NR2F1,2.p2	AK049104|Calm3|12315|calmodulin 3
mm9_v1_chr9_+_37209586_37209656	0.049402	HNF4A_NR2F1,2.p2	BC071193|Robo4|74144|roundabout homolog 4 (Drosophila)	AF536772|Robo4|74144|roundabout homolog 4 (Drosophila)	AK004723|Robo4|74144|roundabout homolog 4 (Drosophila)	NM_028783|Robo4|74144|roundabout homolog 4 (Drosophila)	AK087355|Robo4|74144|roundabout homolog 4 (Drosophila)
mm9_v1_chr2_+_103810274_103810481	0.049345	HNF4A_NR2F1,2.p2	AK013416|Lmo2|16909|LIM domain only 2	BC057880|Lmo2|16909|LIM domain only 2	NM_001142335|Lmo2|16909|LIM domain only 2	NM_008505|Lmo2|16909|LIM domain only 2
mm9_v1_chr11_-_120668581_120668636	0.04922	HNF4A_NR2F1,2.p2	AK078721|Fasn|14104|fatty acid synthase
mm9_v1_chr6_+_8898613_8898694	0.0490397	HNF4A_NR2F1,2.p2	AK083014|Nxph1|18231|neurexophilin 1
mm9_v1_chr11_+_69810424_69810499	0.0489909	HNF4A_NR2F1,2.p2	AK029376|Phf23|78246|PHD finger protein 23
mm9_v1_chr15_+_78939582_78939674	0.0489276	HNF4A_NR2F1,2.p2	AK031386|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1	AK129419|Micall1|27008|microtubule associated monoxygenase, calponin and LIM domain containing -like 1
mm9_v1_chr6_-_148779856_148779997	0.0486986	HNF4A_NR2F1,2.p2	BC151036|Ipo8|320727|importin 8	BC151052|Ipo8|320727|importin 8	BC044819|Ipo8|320727|importin 8	BC054373|Ipo8|320727|importin 8	NM_001081113|Ipo8|320727|importin 8
mm9_v1_chr17_-_25152682_25152728	0.0486294	HNF4A_NR2F1,2.p2	AK089393|Cramp1l|57354|Crm, cramped-like (Drosophila)
mm9_v1_chr8_-_87549120_87549191	0.0486007	HNF4A_NR2F1,2.p2	BC016453|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	BC083335|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AF039405|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	NM_019652|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK007827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK171690|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr4_-_58566362_58566472	0.0484022	HNF4A_NR2F1,2.p2	NM_010336|Lpar1|14745|lysophosphatidic acid receptor 1	U70622|Lpar1|14745|lysophosphatidic acid receptor 1
mm9_v1_chr10_+_62849310_62849422	0.0482437	HNF4A_NR2F1,2.p2	NM_013888|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AK032207|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	AF132906|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC013501|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12	BC071211|Dnajc12|30045|DnaJ (Hsp40) homolog, subfamily C, member 12
mm9_v1_chr12_-_86680251_86680341	0.0481086	HNF4A_NR2F1,2.p2	BC117972|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	BC117971|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	AJ489828|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	AK173323|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9	NM_145138|Nek9|217718|NIMA (never in mitosis gene a)-related expressed kinase 9
mm9_v1_chr4_+_44943967_44944033	0.0478154	HNF4A_NR2F1,2.p2	AK013088|Zcchc7|319885|zinc finger, CCHC domain containing 7
mm9_v1_chr16_+_22951144_22951164	0.04764	HNF4A_NR2F1,2.p2	NM_053176|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr17_-_39981857_39981875	0.0472383	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_162760289_162760304	0.0472264	HNF4A_NR2F1,2.p2	AK011561|Srsf6|67996|serine/arginine-rich splicing factor 6
mm9_v1_chr18_-_36838775_36838784	0.0471791	HNF4A_NR2F1,2.p2	BC024136|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chrX_+_131135770_131135834	0.0467824	HNF4A_NR2F1,2.p2	AK141861|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK164115|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK168116|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	BC005461|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK169104|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	AK077716|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2	NM_019868|Hnrnph2|56258|heterogeneous nuclear ribonucleoprotein H2
mm9_v1_chr6_+_124662272_124662375	0.0467042	HNF4A_NR2F1,2.p2	AK158423|Phb2|12034|prohibitin 2	NM_007531|Phb2|12034|prohibitin 2	AK151952|Phb2|12034|prohibitin 2	AK152375|Phb2|12034|prohibitin 2	AK153368|Phb2|12034|prohibitin 2	AK132058|Phb2|12034|prohibitin 2	AK002334|Phb2|12034|prohibitin 2	AK011107|Phb2|12034|prohibitin 2	AK132052|Phb2|12034|prohibitin 2	AY211613|Phb2|12034|prohibitin 2	X78683|Phb2|12034|prohibitin 2	AK090088|Phb2|12034|prohibitin 2	BC145875|Phb2|12034|prohibitin 2
mm9_v1_chr3_+_94203140_94203230	0.0466385	HNF4A_NR2F1,2.p2	AK040952|Lingo4|320747|leucine rich repeat and Ig domain containing 4	NM_177250|Lingo4|320747|leucine rich repeat and Ig domain containing 4	BC117866|Lingo4|320747|leucine rich repeat and Ig domain containing 4	BC117867|Lingo4|320747|leucine rich repeat and Ig domain containing 4
mm9_v1_chr9_-_21793855_21793867	0.0465331	HNF4A_NR2F1,2.p2	AF237669|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3	AK004876|Rgl3|71746|ral guanine nucleotide dissociation stimulator-like 3
mm9_v1_chr1_+_174451244_174451278	0.0463367	HNF4A_NR2F1,2.p2	NM_027972|Ccdc19|71870|coiled-coil domain containing 19	AK006449|Ccdc19|71870|coiled-coil domain containing 19	BC151048|Ccdc19|71870|coiled-coil domain containing 19	BC151055|Ccdc19|71870|coiled-coil domain containing 19
mm9_v1_chr8_-_125566133_125566242	0.0462192	HNF4A_NR2F1,2.p2	AK138711|Ankrd11|77087|ankyrin repeat domain 11
mm9_v1_chr4_-_142889312_142889356	0.046083	HNF4A_NR2F1,2.p2	M73748|Pdpn|14726|podoplanin	BC026551|Pdpn|14726|podoplanin
mm9_v1_chr6_-_122560022_122560104	0.045703	HNF4A_NR2F1,2.p2	S52658|Gdf3|14562|growth differentiation factor 3	AK160533|Gdf3|14562|growth differentiation factor 3	AK152457|Gdf3|14562|growth differentiation factor 3	NM_008108|Gdf3|14562|growth differentiation factor 3	L06443|Gdf3|14562|growth differentiation factor 3
mm9_v1_chr12_-_17006800_17006879	0.045589	HNF4A_NR2F1,2.p2	AK089230|Pqlc3|217430|PQ loop repeat containing	AK150094|Pqlc3|217430|PQ loop repeat containing	BC025220|Pqlc3|217430|PQ loop repeat containing	AK053171|Pqlc3|217430|PQ loop repeat containing
mm9_v1_chr2_+_162762650_162762674	0.0454322	HNF4A_NR2F1,2.p2	
mm9_v1_chr15_+_99532698_99532771	0.0450396	HNF4A_NR2F1,2.p2	NM_031842|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC059921|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	M25773|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	U66620|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	BC079839|Smarcd1|83797|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm9_v1_chr4_+_124707238_124707259	0.045027	HNF4A_NR2F1,2.p2	NM_145552|Gnl2|230737|guanine nucleotide binding protein-like 2 (nucleolar)
mm9_v1_chr7_+_134234872_134234963	0.0448889	HNF4A_NR2F1,2.p2	AK169672|AI467606|101602|expressed sequence AI467606	AK041954|AI467606|101602|expressed sequence AI467606	AK155213|AI467606|101602|expressed sequence AI467606	AK170238|AI467606|101602|expressed sequence AI467606	AK052739|AI467606|101602|expressed sequence AI467606	NM_178901|AI467606|101602|expressed sequence AI467606	AK168260|AI467606|101602|expressed sequence AI467606	BC038694|AI467606|101602|expressed sequence AI467606	BC064101|AI467606|101602|expressed sequence AI467606
mm9_v1_chr7_+_104230260_104230335	0.0448307	HNF4A_NR2F1,2.p2	AF104244|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	NM_001162477|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	NM_010248|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103524|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103525|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103526|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	BC103527|Gab2|14389|growth factor receptor bound protein 2-associated protein 2	AB018414|Gab2|14389|growth factor receptor bound protein 2-associated protein 2
mm9_v1_chr4_-_94645735_94645794	0.0447008	HNF4A_NR2F1,2.p2	AK164103|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK081684|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK145221|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK166402|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC150946|Mysm1|320713|myb-like, SWIRM and MPN domains 1	BC151172|Mysm1|320713|myb-like, SWIRM and MPN domains 1	AK043802|Mysm1|320713|myb-like, SWIRM and MPN domains 1	NM_177239|Mysm1|320713|myb-like, SWIRM and MPN domains 1
mm9_v1_chr4_+_138748812_138748922	0.0443144	HNF4A_NR2F1,2.p2	AK159390|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK160082|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK156778|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_009798|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	BC002053|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153367|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153394|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK168738|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_001037761|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10406|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10407|Capzb|12345|capping protein (actin filament) muscle Z-line, beta
mm9_v1_chr18_-_65553541_65553541	0.0443064	HNF4A_NR2F1,2.p2	NM_001037294|Alpk2|225638|alpha-kinase 2
mm9_v1_chr8_-_124175827_124175832	0.0442868	HNF4A_NR2F1,2.p2	BC132449|Zcchc14|142682|zinc finger, CCHC domain containing 14	BC137853|Zcchc14|142682|zinc finger, CCHC domain containing 14	AB030244|Zcchc14|142682|zinc finger, CCHC domain containing 14	NM_080855|Zcchc14|142682|zinc finger, CCHC domain containing 14
mm9_v1_chr10_+_79516781_79516793	0.0442866	HNF4A_NR2F1,2.p2	AB072797|Gpx4|625249|glutathione peroxidase 4	NM_001037741|Gpx4|625249|glutathione peroxidase 4	AF274027|Gpx4|625249|glutathione peroxidase 4
mm9_v1_chr2_-_34681496_34681692	0.0442223	HNF4A_NR2F1,2.p2	X54352|Fbxw2|30050|F-box and WD-40 domain protein 2	AK009893|Fbxw2|30050|F-box and WD-40 domain protein 2
mm9_v1_chr11_-_47192793_47192803	0.0439738	HNF4A_NR2F1,2.p2	BC130019|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)	AK040974|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)	NM_011891|Sgcd|24052|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm9_v1_chr11_-_74991244_74991377	0.0438163	HNF4A_NR2F1,2.p2	AK206282|Ovca2|246257|candidate tumor suppressor in ovarian cancer 2
mm9_v1_chr15_+_78744802_78744815	0.0437508	HNF4A_NR2F1,2.p2	BC058388|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chrM_+_9875_9905	0.0437412	HNF4A_NR2F1,2.p2	AK140187|ND4L|17720|NADH dehydrogenase subunit 4L	AK157367|ND4L|17720|NADH dehydrogenase subunit 4L	AK144853|ND4L|17720|NADH dehydrogenase subunit 4L	AK153747|ND4L|17720|NADH dehydrogenase subunit 4L
mm9_v1_chr14_-_56364421_56364522	0.0436724	HNF4A_NR2F1,2.p2	BC003930|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	BC023825|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK159964|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK146317|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK168147|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	AK168115|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1	NM_026819|Dhrs1|52585|dehydrogenase/reductase (SDR family) member 1
mm9_v1_chr4_-_155135137_155135233	0.0435778	HNF4A_NR2F1,2.p2	BC060036|Atad3a|108888|ATPase family, AAA domain containing 3A	BC023301|Atad3a|108888|ATPase family, AAA domain containing 3A	BC047047|Atad3a|108888|ATPase family, AAA domain containing 3A	BC058373|Atad3a|108888|ATPase family, AAA domain containing 3A	AK075921|Atad3a|108888|ATPase family, AAA domain containing 3A	AK165724|Atad3a|108888|ATPase family, AAA domain containing 3A	AK166099|Atad3a|108888|ATPase family, AAA domain containing 3A	AK172038|Atad3a|108888|ATPase family, AAA domain containing 3A	AK150037|Atad3a|108888|ATPase family, AAA domain containing 3A	AK148974|Atad3a|108888|ATPase family, AAA domain containing 3A	AK149702|Atad3a|108888|ATPase family, AAA domain containing 3A	AK172350|Atad3a|108888|ATPase family, AAA domain containing 3A	NM_179203|Atad3a|108888|ATPase family, AAA domain containing 3A
mm9_v1_chr12_-_112724033_112724036	0.0432287	HNF4A_NR2F1,2.p2	BC145736|Gm266|212539|predicted gene 266	BC145762|Gm266|212539|predicted gene 266	NM_001033248|Gm266|212539|predicted gene 266
mm9_v1_chr11_-_31270060_31270077	0.0431469	HNF4A_NR2F1,2.p2	AF031035|Stc2|20856|stanniocalcin 2	NM_011491|Stc2|20856|stanniocalcin 2
mm9_v1_chr1_+_74442542_74442675	0.0431176	HNF4A_NR2F1,2.p2	AK192838|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr5_+_130731488_130731494	0.043092	HNF4A_NR2F1,2.p2	AK045279|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	NM_178897|Tyw1|100929|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)
mm9_v1_chr19_-_5383965_5384040	0.043032	HNF4A_NR2F1,2.p2	
mm9_v1_chr9_-_103267867_103268006	0.0429079	HNF4A_NR2F1,2.p2	AF215660|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AF320340|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	L22067|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC096479|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC062156|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	BC052770|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3	AK010956|Cdv3|321022|carnitine deficiency-associated gene expressed in ventricle 3
mm9_v1_chr5_+_53658376_53658456	0.0428791	HNF4A_NR2F1,2.p2	BC030079|1810013D10Rik|66278|RIKEN cDNA 1810013D10 gene	AK003139|1810013D10Rik|66278|RIKEN cDNA 1810013D10 gene	AK007474|1810013D10Rik|66278|RIKEN cDNA 1810013D10 gene	AK156339|1810013D10Rik|66278|RIKEN cDNA 1810013D10 gene
mm9_v1_chr9_-_54407862_54407915	0.0427535	HNF4A_NR2F1,2.p2	AB016080|Cib2|56506|calcium and integrin binding family member 2	NM_019686|Cib2|56506|calcium and integrin binding family member 2	BC005739|Cib2|56506|calcium and integrin binding family member 2
mm9_v1_chr2_-_92299870_92299954	0.0426346	HNF4A_NR2F1,2.p2	AK144762|Slc35c1|228368|solute carrier family 35, member C1	AK138595|Slc35c1|228368|solute carrier family 35, member C1	AK151154|Slc35c1|228368|solute carrier family 35, member C1	NM_211358|Slc35c1|228368|solute carrier family 35, member C1
mm9_v1_chr11_-_90548862_90548939	0.0423397	HNF4A_NR2F1,2.p2	AK181527|Tom1l1|71943|target of myb1-like 1 (chicken)	AJ505007|Tom1l1|71943|target of myb1-like 1 (chicken)	AK009826|Tom1l1|71943|target of myb1-like 1 (chicken)	AK083630|Tom1l1|71943|target of myb1-like 1 (chicken)	AF395837|Tom1l1|71943|target of myb1-like 1 (chicken)	AK033712|Tom1l1|71943|target of myb1-like 1 (chicken)	NM_028011|Tom1l1|71943|target of myb1-like 1 (chicken)
mm9_v1_chr9_+_72122705_72122721	0.0422032	HNF4A_NR2F1,2.p2	NM_146224|Zfp280d|235469|zinc finger protein 280D	AK169622|Zfp280d|235469|zinc finger protein 280D	AK172652|Zfp280d|235469|zinc finger protein 280D	AK083266|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr5_+_87233514_87233581	0.0421845	HNF4A_NR2F1,2.p2	NM_177680|Ythdc1|231386|YTH domain containing 1
mm9_v1_chr7_+_59134514_59134648	0.0421591	HNF4A_NR2F1,2.p2	NM_008087|Gas2|14453|growth arrest specific 2	M21828|Gas2|14453|growth arrest specific 2
mm9_v1_chr1_+_36364557_36364660	0.0421557	HNF4A_NR2F1,2.p2	NM_001172205|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	NM_001172206|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	NM_145996|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK029237|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK085015|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK149839|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK156376|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK156622|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK156934|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK157607|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK150170|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	AK155555|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)	BC027152|Arid5a|214855|AT rich interactive domain 5A (MRF1-like)
mm9_v1_chr13_-_76236058_76236125	0.0421327	HNF4A_NR2F1,2.p2	AK013194|Arsk|77041|arylsulfatase K	AK083188|Arsk|77041|arylsulfatase K	AK086667|Arsk|77041|arylsulfatase K	AK019515|Arsk|77041|arylsulfatase K	AK032812|Arsk|77041|arylsulfatase K	AK144817|Arsk|77041|arylsulfatase K	AK165970|Arsk|77041|arylsulfatase K	BC046790|Arsk|77041|arylsulfatase K	BC058351|Arsk|77041|arylsulfatase K	AK084090|Arsk|77041|arylsulfatase K	AK031147|Arsk|77041|arylsulfatase K	AK039765|Arsk|77041|arylsulfatase K	AK033968|Arsk|77041|arylsulfatase K	AK046378|Arsk|77041|arylsulfatase K	NM_029847|Arsk|77041|arylsulfatase K
mm9_v1_chr4_+_154998977_154998977	0.0420003	HNF4A_NR2F1,2.p2	AK077668|Cdk11b|12537|cyclin-dependent kinase 11B	NM_007661|Cdk11b|12537|cyclin-dependent kinase 11B
mm9_v1_chr4_+_115769086_115769178	0.0419645	HNF4A_NR2F1,2.p2	AK217820|Lrrc41|230654|leucine rich repeat containing 41
mm9_v1_chr3_+_97817440_97817471	0.0417126	HNF4A_NR2F1,2.p2	AK157200|Notch2|18129|Notch gene homolog 2 (Drosophila)	D32210|Notch2|18129|Notch gene homolog 2 (Drosophila)	NM_010928|Notch2|18129|Notch gene homolog 2 (Drosophila)
mm9_v1_chr17_+_29839370_29839515	0.0414614	HNF4A_NR2F1,2.p2	
mm9_v1_chr3_-_105604199_105604320	0.0414228	HNF4A_NR2F1,2.p2	AK152504|Rap1a|109905|RAS-related protein-1a	AK030897|Rap1a|109905|RAS-related protein-1a	BC051419|Rap1a|109905|RAS-related protein-1a	NM_145541|Rap1a|109905|RAS-related protein-1a
mm9_v1_chr9_+_108410335_108410519	0.0413709	HNF4A_NR2F1,2.p2	NM_133794|Qars|97541|glutaminyl-tRNA synthetase	AK145632|Qars|97541|glutaminyl-tRNA synthetase	AK155759|Qars|97541|glutaminyl-tRNA synthetase	AK161817|Qars|97541|glutaminyl-tRNA synthetase	AK163863|Qars|97541|glutaminyl-tRNA synthetase	AK170826|Qars|97541|glutaminyl-tRNA synthetase	AK171293|Qars|97541|glutaminyl-tRNA synthetase	AK030554|Qars|97541|glutaminyl-tRNA synthetase	AK088049|Qars|97541|glutaminyl-tRNA synthetase	AK165454|Qars|97541|glutaminyl-tRNA synthetase	AK167782|Qars|97541|glutaminyl-tRNA synthetase	AK004814|Qars|97541|glutaminyl-tRNA synthetase	BC079854|Qars|97541|glutaminyl-tRNA synthetase	AK180680|Qars|97541|glutaminyl-tRNA synthetase
mm9_v1_chr2_+_26865431_26865598	0.0412194	HNF4A_NR2F1,2.p2	AK020041|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK034046|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK039867|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK083582|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK052562|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	NM_029862|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK038728|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK043562|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK040379|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene	AK169470|5930434B04Rik|381356|RIKEN cDNA 5930434B04 gene
mm9_v1_chr17_+_56109922_56110011	0.0408588	HNF4A_NR2F1,2.p2	AK164639|Shd|20420|src homology 2 domain-containing transforming protein D	BC103798|Shd|20420|src homology 2 domain-containing transforming protein D
mm9_v1_chr16_-_35939001_35939021	0.0405104	HNF4A_NR2F1,2.p2	AK090152|Dtx3l|209200|deltex 3-like (Drosophila)	BC085093|Dtx3l|209200|deltex 3-like (Drosophila)	AK146802|Dtx3l|209200|deltex 3-like (Drosophila)
mm9_v1_chr8_+_46744023_46744252	0.0404642	HNF4A_NR2F1,2.p2	AK079130|Sorbs2|234214|sorbin and SH3 domain containing 2	AK140498|Sorbs2|234214|sorbin and SH3 domain containing 2	AK050951|Sorbs2|234214|sorbin and SH3 domain containing 2	BC039163|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr15_-_98558560_98558628	0.040304	HNF4A_NR2F1,2.p2	BC021345|Fkbp11|66120|FK506 binding protein 11	BC037596|Fkbp11|66120|FK506 binding protein 11	AK019132|Fkbp11|66120|FK506 binding protein 11	BC002311|Fkbp11|66120|FK506 binding protein 11	BC022900|Fkbp11|66120|FK506 binding protein 11	AK007813|Fkbp11|66120|FK506 binding protein 11	AK003331|Fkbp11|66120|FK506 binding protein 11	NM_024169|Fkbp11|66120|FK506 binding protein 11
mm9_v1_chr4_-_117587421_117587631	0.0401781	HNF4A_NR2F1,2.p2	AK149978|Ipo13|230673|importin 13	AK148263|Ipo13|230673|importin 13	AK052257|Ipo13|230673|importin 13	NM_146152|Ipo13|230673|importin 13
mm9_v1_chr8_-_75016484_75016582	0.0400619	HNF4A_NR2F1,2.p2	NM_177766|Slc35e1|270066|solute carrier family 35, member E1
mm9_v1_chr16_-_21694608_21694737	0.0400606	HNF4A_NR2F1,2.p2	AK051892|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK044207|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	AK053253|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC072629|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	BC052490|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene	NM_001001881|2510009E07Rik|72190|RIKEN cDNA 2510009E07 gene
mm9_v1_chr11_+_96883325_96883448	0.0397481	HNF4A_NR2F1,2.p2	AJ275988|Sp6|83395|trans-acting transcription factor 6
mm9_v1_chr18_+_36904309_36904426	0.0395184	HNF4A_NR2F1,2.p2	NM_011879|Ik|24010|IK cytokine	BC006706|Ik|24010|IK cytokine	AK167238|Ik|24010|IK cytokine	BC029148|Ik|24010|IK cytokine	AK050625|Ik|24010|IK cytokine	AK029644|Ik|24010|IK cytokine	AK163766|Ik|24010|IK cytokine	AK087976|Ik|24010|IK cytokine	BC029671|Ik|24010|IK cytokine	BC029694|Ik|24010|IK cytokine	AK088908|Ik|24010|IK cytokine	AK082356|Ik|24010|IK cytokine	BC014739|Ik|24010|IK cytokine	BC026569|Ik|24010|IK cytokine	BC033356|Ik|24010|IK cytokine	AJ006130|Ik|24010|IK cytokine
mm9_v1_chrX_+_10294707_10294726	0.0394993	HNF4A_NR2F1,2.p2	AK131619|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK014143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr14_-_56332217_56332328	0.0393991	HNF4A_NR2F1,2.p2	AF186373|Tgm1|21816|transglutaminase 1, K polypeptide	NM_001161714|Tgm1|21816|transglutaminase 1, K polypeptide	NM_001161715|Tgm1|21816|transglutaminase 1, K polypeptide
mm9_v1_chr11_-_30119771_30119771	0.0393813	HNF4A_NR2F1,2.p2	NM_175836|Spnb2|20742|spectrin beta 2
mm9_v1_chr12_-_74387687_74387697	0.039373	HNF4A_NR2F1,2.p2	BC012521|Trmt5|76357|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)	AK049127|Trmt5|76357|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)	AK011576|Trmt5|76357|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)	NM_029580|Trmt5|76357|TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)
mm9_v1_chrX_-_35809466_35809639	0.0392796	HNF4A_NR2F1,2.p2	BC138718|Lamp2|16784|lysosomal-associated membrane protein 2	BC138723|Lamp2|16784|lysosomal-associated membrane protein 2	J05287|Lamp2|16784|lysosomal-associated membrane protein 2	AK048174|Lamp2|16784|lysosomal-associated membrane protein 2	AK159272|Lamp2|16784|lysosomal-associated membrane protein 2	AK159731|Lamp2|16784|lysosomal-associated membrane protein 2	AK136550|Lamp2|16784|lysosomal-associated membrane protein 2	AK012149|Lamp2|16784|lysosomal-associated membrane protein 2	AK032974|Lamp2|16784|lysosomal-associated membrane protein 2	AK150766|Lamp2|16784|lysosomal-associated membrane protein 2	AK088804|Lamp2|16784|lysosomal-associated membrane protein 2	AK146731|Lamp2|16784|lysosomal-associated membrane protein 2	AK078193|Lamp2|16784|lysosomal-associated membrane protein 2	NM_001017959|Lamp2|16784|lysosomal-associated membrane protein 2	NM_010685|Lamp2|16784|lysosomal-associated membrane protein 2	AK163933|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr13_+_46597448_46597458	0.0392442	HNF4A_NR2F1,2.p2	BC057937|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr7_-_52494097_52494243	0.0391847	HNF4A_NR2F1,2.p2	CT010217|Cd37|12493|CD37 antigen	BC004610|Cd37|12493|CD37 antigen	BC031724|Cd37|12493|CD37 antigen	AK155966|Cd37|12493|CD37 antigen	AK155663|Cd37|12493|CD37 antigen	NM_007645|Cd37|12493|CD37 antigen	AK154250|Cd37|12493|CD37 antigen
mm9_v1_chr17_+_75404893_75404907	0.0390949	HNF4A_NR2F1,2.p2	AF022889|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr6_-_91423388_91423454	0.0389898	HNF4A_NR2F1,2.p2	AK010479|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4	BC019405|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4	NM_133928|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4
mm9_v1_chr12_+_88614091_88614155	0.0388244	HNF4A_NR2F1,2.p2	AK191114|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK177365|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK182129|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)
mm9_v1_chr2_-_48804794_48804803	0.0388062	HNF4A_NR2F1,2.p2	AK145454|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr11_-_23565843_23565958	0.038773	HNF4A_NR2F1,2.p2	AF329877|Pex13|72129|peroxisomal biogenesis factor 13	AJ304506|Pex13|72129|peroxisomal biogenesis factor 13	AK087918|Pex13|72129|peroxisomal biogenesis factor 13	AK153438|Pex13|72129|peroxisomal biogenesis factor 13	AK031975|Pex13|72129|peroxisomal biogenesis factor 13	AK011355|Pex13|72129|peroxisomal biogenesis factor 13	AK029099|Pex13|72129|peroxisomal biogenesis factor 13	AK029336|Pex13|72129|peroxisomal biogenesis factor 13	AK031710|Pex13|72129|peroxisomal biogenesis factor 13	NM_023651|Pex13|72129|peroxisomal biogenesis factor 13	BC023683|Pex13|72129|peroxisomal biogenesis factor 13	AK169148|Pex13|72129|peroxisomal biogenesis factor 13
mm9_v1_chr1_+_75233201_75233229	0.0387612	HNF4A_NR2F1,2.p2	
mm9_v1_chr15_-_98608556_98608580	0.0387526	HNF4A_NR2F1,2.p2	BC114969|Wnt10b|22410|wingless related MMTV integration site 10b	AK029284|Wnt10b|22410|wingless related MMTV integration site 10b	NM_011718|Wnt10b|22410|wingless related MMTV integration site 10b	U30464|Wnt10b|22410|wingless related MMTV integration site 10b
mm9_v1_chr1_+_9838330_9838477	0.0387242	HNF4A_NR2F1,2.p2	AK030314|Sgk3|170755|serum/glucocorticoid regulated kinase 3	NM_001037759|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK166531|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK146561|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK031328|Sgk3|170755|serum/glucocorticoid regulated kinase 3	AK171959|Sgk3|170755|serum/glucocorticoid regulated kinase 3
mm9_v1_chr2_+_30122064_30122111	0.0384225	HNF4A_NR2F1,2.p2	NM_172267|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC132271|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC132273|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC145356|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1	BC171925|Phyhd1|227696|phytanoyl-CoA dioxygenase domain containing 1
mm9_v1_chr7_-_148358709_148358768	0.0384199	HNF4A_NR2F1,2.p2	AK145173|Rnh1|107702|ribonuclease/angiogenin inhibitor 1	NM_001172100|Rnh1|107702|ribonuclease/angiogenin inhibitor 1
mm9_v1_chr10_+_117578960_117579000	0.0383618	HNF4A_NR2F1,2.p2	M20823|Mdm1|17245|transformed mouse 3T3 cell double minute 1	M20824|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490427|Mdm1|17245|transformed mouse 3T3 cell double minute 1	EU490428|Mdm1|17245|transformed mouse 3T3 cell double minute 1
mm9_v1_chr17_-_26227104_26227112	0.0383516	HNF4A_NR2F1,2.p2	AF155575|Decr2|26378|2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	NM_011933|Decr2|26378|2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
mm9_v1_chr11_+_68245608_68245745	0.0383353	HNF4A_NR2F1,2.p2	AK089483|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK089348|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK171279|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	NM_177320|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK154643|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101	AK149847|Pik3r5|320207|phosphoinositide-3-kinase, regulatory subunit 5, p101
mm9_v1_chr10_+_72119562_72119594	0.0382989	HNF4A_NR2F1,2.p2	AK170637|Zwint|52696|ZW10 interactor
mm9_v1_chr16_+_17452048_17452310	0.0382895	HNF4A_NR2F1,2.p2	AK052315|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	AK048641|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	NM_007764|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	AK163981|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC023080|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	X90648|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC131984|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like	BC131986|Crkl|12929|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm9_v1_chr5_+_104475948_104476060	0.0380114	HNF4A_NR2F1,2.p2	AK158058|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	AK004444|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	AK076500|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	NM_028794|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9	BC033921|Nudt9|74167|nudix (nucleoside diphosphate linked moiety X)-type motif 9
mm9_v1_chr9_+_108564418_108564538	0.0378374	HNF4A_NR2F1,2.p2	AK161086|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	AK075624|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	NM_020520|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	BC029733|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	AK152436|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	BC052871|Slc25a20|57279|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
mm9_v1_chr16_-_44016471_44016548	0.0376817	HNF4A_NR2F1,2.p2	BC037472|Gramd1c|207798|GRAM domain containing 1C	AK129016|Gramd1c|207798|GRAM domain containing 1C	AK035257|Gramd1c|207798|GRAM domain containing 1C	NM_153528|Gramd1c|207798|GRAM domain containing 1C
mm9_v1_chr4_-_120498198_120498325	0.0375788	HNF4A_NR2F1,2.p2	AK156353|Nfyc|18046|nuclear transcription factor-Y gamma	BC020117|Nfyc|18046|nuclear transcription factor-Y gamma	BC085261|Nfyc|18046|nuclear transcription factor-Y gamma	AK011327|Nfyc|18046|nuclear transcription factor-Y gamma	NM_008692|Nfyc|18046|nuclear transcription factor-Y gamma
mm9_v1_chr17_+_44325518_44325614	0.0375598	HNF4A_NR2F1,2.p2	NM_172621|Clic5|224796|chloride intracellular channel 5	AK046522|Clic5|224796|chloride intracellular channel 5	BC064037|Clic5|224796|chloride intracellular channel 5	AK017800|Clic5|224796|chloride intracellular channel 5
mm9_v1_chr5_-_143579060_143579087	0.037471	HNF4A_NR2F1,2.p2	BC049818|Tnrc18|231861|trinucleotide repeat containing 18	NM_001122730|Tnrc18|231861|trinucleotide repeat containing 18	NM_178242|Tnrc18|231861|trinucleotide repeat containing 18
mm9_v1_chr10_-_14264800_14264841	0.0373741	HNF4A_NR2F1,2.p2	AB183545|Gpr126|215798|G protein-coupled receptor 126	NM_001002268|Gpr126|215798|G protein-coupled receptor 126
mm9_v1_chr7_+_108985016_108985132	0.0369102	HNF4A_NR2F1,2.p2	
mm9_v1_chr15_+_12251250_12251389	0.0368059	HNF4A_NR2F1,2.p2	AB271918|Golph3|66629|golgi phosphoprotein 3	BC051035|Golph3|66629|golgi phosphoprotein 3	NM_025673|Golph3|66629|golgi phosphoprotein 3	BC039909|Golph3|66629|golgi phosphoprotein 3	BC031445|Golph3|66629|golgi phosphoprotein 3
mm9_v1_chr19_-_9003845_9003845	0.0366507	HNF4A_NR2F1,2.p2	AK133529|Rom1|19881|rod outer segment membrane protein 1	NM_009073|Rom1|19881|rod outer segment membrane protein 1
mm9_v1_chr13_+_32894489_32894508	0.0363175	HNF4A_NR2F1,2.p2	BC058744|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr4_-_140609574_140609606	0.036242	HNF4A_NR2F1,2.p2	AF527975|Crocc|230872|ciliary rootlet coiled-coil, rootletin	NM_172122|Crocc|230872|ciliary rootlet coiled-coil, rootletin
mm9_v1_chr6_+_85401450_85401503	0.0361242	HNF4A_NR2F1,2.p2	NM_007638|Cct7|12468|chaperonin containing Tcp1, subunit 7 (eta)
mm9_v1_chr7_+_138514648_138514699	0.0360604	HNF4A_NR2F1,2.p2	AK077585|Pstk|214580|phosphoseryl-tRNA kinase	BC115503|Pstk|214580|phosphoseryl-tRNA kinase	NM_001039534|Pstk|214580|phosphoseryl-tRNA kinase	AK017332|Pstk|214580|phosphoseryl-tRNA kinase	BC110381|Pstk|214580|phosphoseryl-tRNA kinase
mm9_v1_chr11_-_5662259_5662400	0.0360335	HNF4A_NR2F1,2.p2	BC066994|Urgcp|72046|upregulator of cell proliferation	AK035580|Urgcp|72046|upregulator of cell proliferation	AK041953|Urgcp|72046|upregulator of cell proliferation	NM_001077661|Urgcp|72046|upregulator of cell proliferation	AK037923|Urgcp|72046|upregulator of cell proliferation	AK053862|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr5_-_143668369_143668395	0.0360085	HNF4A_NR2F1,2.p2	BC138611|Actb|11461|actin, beta	BC138614|Actb|11461|actin, beta	AK179836|Actb|11461|actin, beta	AK180740|Actb|11461|actin, beta	AK180898|Actb|11461|actin, beta	AK184086|Actb|11461|actin, beta	AK184228|Actb|11461|actin, beta	AK187727|Actb|11461|actin, beta	J04181|Actb|11461|actin, beta
mm9_v1_chr15_-_74583382_74583477	0.0357369	HNF4A_NR2F1,2.p2	AF141377|Lynx1|23936|Ly6/neurotoxin 1	AK013827|Lynx1|23936|Ly6/neurotoxin 1	NM_011838|Lynx1|23936|Ly6/neurotoxin 1	AK165295|Lynx1|23936|Ly6/neurotoxin 1	AK165314|Lynx1|23936|Ly6/neurotoxin 1	AK162920|Lynx1|23936|Ly6/neurotoxin 1	AK161907|Lynx1|23936|Ly6/neurotoxin 1
mm9_v1_chrX_+_34138224_34138276	0.0355701	HNF4A_NR2F1,2.p2	AF042491|Pgrmc1|53328|progesterone receptor membrane component 1
mm9_v1_chr11_+_75469516_75469674	0.0353644	HNF4A_NR2F1,2.p2	AK171107|Myo1c|17913|myosin IC	NM_001080775|Myo1c|17913|myosin IC	AK154294|Myo1c|17913|myosin IC	AK165680|Myo1c|17913|myosin IC	AY007255|Myo1c|17913|myosin IC
mm9_v1_chr2_+_180460024_180460083	0.0353566	HNF4A_NR2F1,2.p2	NM_183161|Slc17a9|228993|solute carrier family 17, member 9	BC019537|Slc17a9|228993|solute carrier family 17, member 9
mm9_v1_chr19_+_9023469_9023512	0.0351487	HNF4A_NR2F1,2.p2	AK180875|Mta2|23942|metastasis-associated gene family, member 2	AK185607|Mta2|23942|metastasis-associated gene family, member 2	AK210254|Mta2|23942|metastasis-associated gene family, member 2	AK211099|Mta2|23942|metastasis-associated gene family, member 2	AK218258|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr11_+_102291828_102291840	0.0351016	HNF4A_NR2F1,2.p2	AK152944|Grn|14824|granulin	AK153183|Grn|14824|granulin	AK159397|Grn|14824|granulin	AK159428|Grn|14824|granulin	AK160074|Grn|14824|granulin	AK152118|Grn|14824|granulin	AK160022|Grn|14824|granulin	AK150420|Grn|14824|granulin	BC049943|Grn|14824|granulin	AK152213|Grn|14824|granulin	BC129849|Grn|14824|granulin	BC129850|Grn|14824|granulin	AK150338|Grn|14824|granulin	M86736|Grn|14824|granulin
mm9_v1_chr10_+_5958432_5958574	0.0350427	HNF4A_NR2F1,2.p2	AK132308|Zbtb2|381990|zinc finger and BTB domain containing 2	NM_001033466|Zbtb2|381990|zinc finger and BTB domain containing 2
mm9_v1_chr4_-_153471168_153471281	0.0346643	HNF4A_NR2F1,2.p2	BC066045|Trp73|22062|transformation related protein 73	Y19235|Trp73|22062|transformation related protein 73	AK139633|Trp73|22062|transformation related protein 73	NM_001126330|Trp73|22062|transformation related protein 73	NM_001126331|Trp73|22062|transformation related protein 73
mm9_v1_chr6_-_72330414_72330474	0.0345563	HNF4A_NR2F1,2.p2	BC086925|Vamp5|53620|vesicle-associated membrane protein 5	AK009266|Vamp5|53620|vesicle-associated membrane protein 5	NM_001080742|Vamp5|53620|vesicle-associated membrane protein 5	NM_016872|Vamp5|53620|vesicle-associated membrane protein 5
mm9_v1_chr7_-_106976715_106976926	0.0344632	HNF4A_NR2F1,2.p2	BC116892|Neu3|50877|neuraminidase 3	BC116924|Neu3|50877|neuraminidase 3	AK050428|Neu3|50877|neuraminidase 3	AK134405|Neu3|50877|neuraminidase 3	AB026842|Neu3|50877|neuraminidase 3	NM_016720|Neu3|50877|neuraminidase 3
mm9_v1_chr4_+_155205723_155205804	0.0342453	HNF4A_NR2F1,2.p2	AK003442|Aurkaip1|66077|aurora kinase A interacting protein 1	NM_025338|Aurkaip1|66077|aurora kinase A interacting protein 1	AK002737|Aurkaip1|66077|aurora kinase A interacting protein 1	AK158165|Aurkaip1|66077|aurora kinase A interacting protein 1	AK033452|Aurkaip1|66077|aurora kinase A interacting protein 1	AK166049|Aurkaip1|66077|aurora kinase A interacting protein 1	BC011245|Aurkaip1|66077|aurora kinase A interacting protein 1	AK144719|Aurkaip1|66077|aurora kinase A interacting protein 1
mm9_v1_chr7_+_146038021_146038054	0.0340916	HNF4A_NR2F1,2.p2	AK129386|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	AK011198|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr4_-_137881771_137881842	0.0340373	HNF4A_NR2F1,2.p2	AK215426|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr11_-_102152310_102152512	0.0339875	HNF4A_NR2F1,2.p2	AK218190|Atxn7l3|217218|ataxin 7-like 3	AK053165|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr18_+_14941735_14941757	0.0334296	HNF4A_NR2F1,2.p2	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr1_+_58502359_58502380	0.0331835	HNF4A_NR2F1,2.p2	AK076788|Nif3l1|65102|Ngg1 interacting factor 3-like 1 (S. pombe)	AK003978|Nif3l1|65102|Ngg1 interacting factor 3-like 1 (S. pombe)	AK154815|Nif3l1|65102|Ngg1 interacting factor 3-like 1 (S. pombe)
mm9_v1_chr13_-_101262502_101262533	0.0329731	HNF4A_NR2F1,2.p2	AK158705|Gtf2h2|23894|general transcription factor II H, polypeptide 2	BC053382|Gtf2h2|23894|general transcription factor II H, polypeptide 2	AK010543|Gtf2h2|23894|general transcription factor II H, polypeptide 2	AK078297|Gtf2h2|23894|general transcription factor II H, polypeptide 2
mm9_v1_chr11_-_22759512_22759752	0.0328974	HNF4A_NR2F1,2.p2	AF092050|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	AY043479|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	AK160088|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	NM_016888|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
mm9_v1_chr7_+_31844947_31844953	0.0328044	HNF4A_NR2F1,2.p2	AJ487521|Lgi4|243914|leucine-rich repeat LGI family, member 4	AJ487960|Lgi4|243914|leucine-rich repeat LGI family, member 4	NM_144556|Lgi4|243914|leucine-rich repeat LGI family, member 4
mm9_v1_chr17_+_34726750_34726889	0.0327773	HNF4A_NR2F1,2.p2	AK155617|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	NM_134116|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	AK146245|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC085186|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	AK144833|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)	BC080804|Gpsm3|106512|G-protein signalling modulator 3 (AGS3-like, C. elegans)
mm9_v1_chr6_+_28430311_28430460	0.0326819	HNF4A_NR2F1,2.p2	AK133837|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	NM_019776|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK167576|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK159837|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK088028|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK161591|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AB021491|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK034914|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	AK162432|Snd1|56463|staphylococcal nuclease and tudor domain containing 1	BC007126|Snd1|56463|staphylococcal nuclease and tudor domain containing 1
mm9_v1_chr1_-_134539434_134539434	0.032151	HNF4A_NR2F1,2.p2	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chrX_+_68303282_68303430	0.0321484	HNF4A_NR2F1,2.p2	AK090190|Mamld1|333639|mastermind-like domain containing 1	NM_001081354|Mamld1|333639|mastermind-like domain containing 1
mm9_v1_chr4_-_58566053_58566195	0.0321082	HNF4A_NR2F1,2.p2	BC025425|Lpar1|14745|lysophosphatidic acid receptor 1	AK030330|Lpar1|14745|lysophosphatidic acid receptor 1	NM_172989|Lpar1|14745|lysophosphatidic acid receptor 1
mm9_v1_chr16_-_98169926_98169967	0.0320166	HNF4A_NR2F1,2.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr1_-_182160174_182160194	0.0319392	HNF4A_NR2F1,2.p2	U57325|Psen2|19165|presenilin 2
mm9_v1_chr1_+_137647796_137647915	0.0318911	HNF4A_NR2F1,2.p2	AK216299|Csrp1|13007|cysteine and glycine-rich protein 1	AK178295|Csrp1|13007|cysteine and glycine-rich protein 1	AK188439|Csrp1|13007|cysteine and glycine-rich protein 1	AK217070|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr11_+_70783966_70784013	0.0318876	HNF4A_NR2F1,2.p2	AK010289|Rpain|69723|RPA interacting protein	DQ810267|Rpain|69723|RPA interacting protein	DQ810268|Rpain|69723|RPA interacting protein	DQ810269|Rpain|69723|RPA interacting protein	DQ810270|Rpain|69723|RPA interacting protein	DQ810271|Rpain|69723|RPA interacting protein	DQ810272|Rpain|69723|RPA interacting protein
mm9_v1_chr3_-_117571711_117571747	0.0318336	HNF4A_NR2F1,2.p2	BC087942|Snx7|76561|sorting nexin 7
mm9_v1_chr1_+_171899520_171899582	0.0317784	HNF4A_NR2F1,2.p2	AK014177|3110045C21Rik|67303|RIKEN cDNA 3110045C21 gene	AK014032|3110045C21Rik|67303|RIKEN cDNA 3110045C21 gene
mm9_v1_chr13_-_49343519_49343531	0.0315279	HNF4A_NR2F1,2.p2	AK006068|Susd3|66329|sushi domain containing 3	AK013276|Susd3|66329|sushi domain containing 3	AK003860|Susd3|66329|sushi domain containing 3	NM_025491|Susd3|66329|sushi domain containing 3
mm9_v1_chr2_+_181231870_181232009	0.031512	HNF4A_NR2F1,2.p2	AK171825|Tpd52l2|66314|tumor protein D52-like 2	AK147885|Tpd52l2|66314|tumor protein D52-like 2	AK161092|Tpd52l2|66314|tumor protein D52-like 2	AK013188|Tpd52l2|66314|tumor protein D52-like 2	AK051268|Tpd52l2|66314|tumor protein D52-like 2	AK160727|Tpd52l2|66314|tumor protein D52-like 2	AK013085|Tpd52l2|66314|tumor protein D52-like 2	AK155987|Tpd52l2|66314|tumor protein D52-like 2	AK159925|Tpd52l2|66314|tumor protein D52-like 2	BC006886|Tpd52l2|66314|tumor protein D52-like 2	NM_025482|Tpd52l2|66314|tumor protein D52-like 2
mm9_v1_chrX_+_93291474_93291563	0.0314248	HNF4A_NR2F1,2.p2	
mm9_v1_chr16_+_5884885_5884885	0.0313997	HNF4A_NR2F1,2.p2	BC053009|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_021477|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr11_+_101286411_101286461	0.0313974	HNF4A_NR2F1,2.p2	AK199105|Rundc1|217201|RUN domain containing 1
mm9_v1_chrX_-_50723622_50723678	0.031264	HNF4A_NR2F1,2.p2	BC100442|Mospd1|70380|motile sperm domain containing 1	BC018329|Mospd1|70380|motile sperm domain containing 1	BC085100|Mospd1|70380|motile sperm domain containing 1	AK007533|Mospd1|70380|motile sperm domain containing 1	NM_027409|Mospd1|70380|motile sperm domain containing 1	AK088275|Mospd1|70380|motile sperm domain containing 1	AK139795|Mospd1|70380|motile sperm domain containing 1
mm9_v1_chrX_-_148776674_148776969	0.0311489	HNF4A_NR2F1,2.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr11_+_98902774_98902804	0.0308823	HNF4A_NR2F1,2.p2	
mm9_v1_chr5_+_31350991_31351042	0.0308348	HNF4A_NR2F1,2.p2	NM_027855|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK151307|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK151366|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	BC049637|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AB009018|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK002276|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	AK169267|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene	BC057097|0610007C21Rik|381629|RIKEN cDNA 0610007C21 gene
mm9_v1_chr1_-_168058009_168058054	0.0307819	HNF4A_NR2F1,2.p2	BC117936|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK142263|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001033344|Dusp27|240892|dual specificity phosphatase 27 (putative)	NM_001160049|Dusp27|240892|dual specificity phosphatase 27 (putative)	AK048603|Dusp27|240892|dual specificity phosphatase 27 (putative)
mm9_v1_chr7_+_134985435_134985552	0.0305872	HNF4A_NR2F1,2.p2	BC005791|Stx4a|20909|syntaxin 4A (placental)	U76832|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr11_-_69734369_69734464	0.0305275	HNF4A_NR2F1,2.p2	AY129328|Eif5a|276770|eukaryotic translation initiation factor 5A	AY129329|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166592|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166594|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr11_+_22890632_22890638	0.0303587	HNF4A_NR2F1,2.p2	BC054773|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)	AK163369|Cct4|12464|chaperonin containing Tcp1, subunit 4 (delta)
mm9_v1_chr9_-_21767872_21768019	0.0303084	HNF4A_NR2F1,2.p2	BC003953|Epor|13857|erythropoietin receptor	J04843|Epor|13857|erythropoietin receptor	AK139031|Epor|13857|erythropoietin receptor	BC046282|Epor|13857|erythropoietin receptor	NM_010149|Epor|13857|erythropoietin receptor
mm9_v1_chr1_-_38109910_38110011	0.0302774	HNF4A_NR2F1,2.p2	AK003934|Rev1|56210|REV1 homolog (S. cerevisiae)
mm9_v1_chr5_-_113325381_113325386	0.030271	HNF4A_NR2F1,2.p2	AK085912|Myo18b|74376|myosin XVIIIb	NM_028901|Myo18b|74376|myosin XVIIIb
mm9_v1_chr18_-_64664117_64664189	0.0301408	HNF4A_NR2F1,2.p2	AK193538|Nars|70223|asparaginyl-tRNA synthetase
mm9_v1_chr5_-_72950837_72950946	0.0299321	HNF4A_NR2F1,2.p2	AK162215|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	AK164247|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	AK132320|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	NM_133921|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1	AK145289|Nfxl1|100978|nuclear transcription factor, X-box binding-like 1
mm9_v1_chr3_+_63100101_63100109	0.0297377	HNF4A_NR2F1,2.p2	AK033824|Mme|17380|membrane metallo endopeptidase
mm9_v1_chr11_-_96679999_96680082	0.0294185	HNF4A_NR2F1,2.p2	AK202708|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr15_+_76174029_76174095	0.0293457	HNF4A_NR2F1,2.p2	AK192516|Cyc1|66445|cytochrome c-1
mm9_v1_chr12_+_75008853_75009062	0.0293246	HNF4A_NR2F1,2.p2	NM_010431|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK034087|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK150367|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK138944|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AK017853|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	BC026139|Hif1a|15251|hypoxia inducible factor 1, alpha subunit	AF003695|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr19_-_46454182_46454202	0.0293179	HNF4A_NR2F1,2.p2	AK183380|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK181671|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)	AK194654|Actr1a|54130|ARP1 actin-related protein 1 homolog A, centractin alpha (yeast)
mm9_v1_chr10_+_86148239_86148360	0.0292652	HNF4A_NR2F1,2.p2	AK019015|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK007490|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK017634|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK012122|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene	AK090016|1810014B01Rik|66263|RIKEN cDNA 1810014B01 gene
mm9_v1_chr10_+_12810660_12810714	0.0291802	HNF4A_NR2F1,2.p2	X95503|Plagl1|22634|pleiomorphic adenoma gene-like 1
mm9_v1_chr15_+_9265343_9265371	0.029029	HNF4A_NR2F1,2.p2	AK052644|Ugt3a2|223337|UDP glycosyltransferases 3 family, polypeptide A2	AK050128|Ugt3a2|223337|UDP glycosyltransferases 3 family, polypeptide A2	NM_144845|Ugt3a2|223337|UDP glycosyltransferases 3 family, polypeptide A2	BC022134|Ugt3a2|223337|UDP glycosyltransferases 3 family, polypeptide A2	AK041045|Ugt3a2|223337|UDP glycosyltransferases 3 family, polypeptide A2	BC034837|Ugt3a2|223337|UDP glycosyltransferases 3 family, polypeptide A2
mm9_v1_chr19_-_47611583_47611612	0.029002	HNF4A_NR2F1,2.p2	AK166348|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK146929|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1
mm9_v1_chr5_+_125048757_125048805	0.028898	HNF4A_NR2F1,2.p2	AK031829|Tctn2|67978|tectonic family member 2	NM_026486|Tctn2|67978|tectonic family member 2	DQ278869|Tctn2|67978|tectonic family member 2	AK012720|Tctn2|67978|tectonic family member 2	AK014476|Tctn2|67978|tectonic family member 2	AK165102|Tctn2|67978|tectonic family member 2	AK083080|Tctn2|67978|tectonic family member 2	AK032378|Tctn2|67978|tectonic family member 2	AK087856|Tctn2|67978|tectonic family member 2	BC058375|Tctn2|67978|tectonic family member 2
mm9_v1_chr11_-_96691261_96691289	0.0288966	HNF4A_NR2F1,2.p2	AK152040|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	AK153529|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	NM_008686|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr11_-_69793943_69794050	0.0288892	HNF4A_NR2F1,2.p2	BC003752|Rai12|54351|retinoic acid induced 12	AF004107|Rai12|54351|retinoic acid induced 12
mm9_v1_chr2_-_33323966_33324113	0.0288327	HNF4A_NR2F1,2.p2	AK206442|Zbtb43|71834|zinc finger and BTB domain containing 43	AK212293|Zbtb43|71834|zinc finger and BTB domain containing 43	AK122277|Zbtb43|71834|zinc finger and BTB domain containing 43	AK005818|Zbtb43|71834|zinc finger and BTB domain containing 43	AK147806|Zbtb43|71834|zinc finger and BTB domain containing 43	BC043117|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_001025594|Zbtb43|71834|zinc finger and BTB domain containing 43	NM_027947|Zbtb43|71834|zinc finger and BTB domain containing 43
mm9_v1_chrX_+_90531783_90531984	0.0287269	HNF4A_NR2F1,2.p2	AB006103|Arx|11878|aristaless related homeobox	BC052033|Arx|11878|aristaless related homeobox	NM_007492|Arx|11878|aristaless related homeobox
mm9_v1_chr9_-_44076480_44076681	0.0286401	HNF4A_NR2F1,2.p2	BC050054|Nlrx1|270151|NLR family member X1	AK141296|Nlrx1|270151|NLR family member X1	AK145988|Nlrx1|270151|NLR family member X1	NM_178420|Nlrx1|270151|NLR family member X1	AK166689|Nlrx1|270151|NLR family member X1	NM_001163742|Nlrx1|270151|NLR family member X1
mm9_v1_chr9_+_107479326_107479334	0.0284581	HNF4A_NR2F1,2.p2	AF422176|Hyal1|15586|hyaluronoglucosaminidase 1
mm9_v1_chr16_-_38445988_38446143	0.0283697	HNF4A_NR2F1,2.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr17_+_75404865_75404880	0.028321	HNF4A_NR2F1,2.p2	NM_019919|Ltbp1|268977|latent transforming growth factor beta binding protein 1
mm9_v1_chr18_-_60760086_60760117	0.0283174	HNF4A_NR2F1,2.p2	AK034012|Synpo|104027|synaptopodin
mm9_v1_chr7_-_30290470_30290595	0.0282512	HNF4A_NR2F1,2.p2	AK171182|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	AK154121|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3	NM_001081028|Sipa1l3|74206|signal-induced proliferation-associated 1 like 3
mm9_v1_chr7_+_147323460_147323573	0.0282248	HNF4A_NR2F1,2.p2	NM_199301|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144625|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK144453|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	AK140018|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)	BC027306|Mtg1|212508|mitochondrial GTPase 1 homolog (S. cerevisiae)
mm9_v1_chr19_-_54018725_54018744	0.0280284	HNF4A_NR2F1,2.p2	AK016185|Bbip1|66360|BBSome interacting protein 1
mm9_v1_chr8_-_75005707_75005831	0.0277024	HNF4A_NR2F1,2.p2	AK090231|Slc35e1|270066|solute carrier family 35, member E1	AK182855|Slc35e1|270066|solute carrier family 35, member E1
mm9_v1_chr6_+_113433656_113433876	0.0276481	HNF4A_NR2F1,2.p2	BC025932|Creld1|171508|cysteine-rich with EGF-like domains 1	AK186017|Creld1|171508|cysteine-rich with EGF-like domains 1	AK195695|Creld1|171508|cysteine-rich with EGF-like domains 1	AK208544|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr3_-_148617598_148617598	0.0276203	HNF4A_NR2F1,2.p2	NM_001081298|Lphn2|99633|latrophilin 2
mm9_v1_chr17_-_87424652_87424745	0.0275815	HNF4A_NR2F1,2.p2	AK218842|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK171083|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	BC028862|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	D50264|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	NM_008838|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F	AK132796|Pigf|18701|phosphatidylinositol glycan anchor biosynthesis, class F
mm9_v1_chr2_-_93850851_93850912	0.0275028	HNF4A_NR2F1,2.p2	AK145586|Alkbh3|69113|alkB, alkylation repair homolog 3 (E. coli)	BC018196|Alkbh3|69113|alkB, alkylation repair homolog 3 (E. coli)	NM_026944|Alkbh3|69113|alkB, alkylation repair homolog 3 (E. coli)	AK187483|Alkbh3|69113|alkB, alkylation repair homolog 3 (E. coli)
mm9_v1_chr7_+_91040751_91040937	0.02739	HNF4A_NR2F1,2.p2	AK031949|Mesdc2|67943|mesoderm development candidate 2	AK076760|Mesdc2|67943|mesoderm development candidate 2	AK172009|Mesdc2|67943|mesoderm development candidate 2	AK076773|Mesdc2|67943|mesoderm development candidate 2	AK008735|Mesdc2|67943|mesoderm development candidate 2	BC014742|Mesdc2|67943|mesoderm development candidate 2	AK204742|Mesdc2|67943|mesoderm development candidate 2
mm9_v1_chr1_+_75233130_75233146	0.0272049	HNF4A_NR2F1,2.p2	AB028858|Dnajb2|56812|DnaJ (Hsp40) homolog, subfamily B, member 2
mm9_v1_chrX_+_34283626_34283705	0.0270316	HNF4A_NR2F1,2.p2	BC147709|Slc25a43|194744|solute carrier family 25, member 43	BC147717|Slc25a43|194744|solute carrier family 25, member 43	BC172137|Slc25a43|194744|solute carrier family 25, member 43	NM_001085497|Slc25a43|194744|solute carrier family 25, member 43	AK153028|Slc25a43|194744|solute carrier family 25, member 43
mm9_v1_chr6_+_125502979_125502996	0.0267369	HNF4A_NR2F1,2.p2	AK044921|Vwf|22371|Von Willebrand factor homolog	AK083237|Vwf|22371|Von Willebrand factor homolog	AK164450|Vwf|22371|Von Willebrand factor homolog	DQ355287|Vwf|22371|Von Willebrand factor homolog	DQ355288|Vwf|22371|Von Willebrand factor homolog	NM_011708|Vwf|22371|Von Willebrand factor homolog
mm9_v1_chr13_-_74454770_74454775	0.0267242	HNF4A_NR2F1,2.p2	NM_011051|Pdcd6|18570|programmed cell death 6
mm9_v1_chr7_-_125591493_125591732	0.0266702	HNF4A_NR2F1,2.p2	AK144560|Syt17|110058|synaptotagmin XVII	AK145293|Syt17|110058|synaptotagmin XVII
mm9_v1_chr3_-_116671720_116671775	0.026637	HNF4A_NR2F1,2.p2	AK136939|Palmd|114301|palmdelphin
mm9_v1_chr10_-_77814979_77814987	0.0265935	HNF4A_NR2F1,2.p2	
mm9_v1_chr19_-_4839283_4839342	0.0265839	HNF4A_NR2F1,2.p2	AF173379|Ccs|12460|copper chaperone for superoxide dismutase	BC026938|Ccs|12460|copper chaperone for superoxide dismutase	NM_016892|Ccs|12460|copper chaperone for superoxide dismutase
mm9_v1_chr5_+_31216131_31216188	0.0265803	HNF4A_NR2F1,2.p2	AK138020|Emilin1|100952|elastin microfibril interfacer 1	BC005481|Emilin1|100952|elastin microfibril interfacer 1	NM_133918|Emilin1|100952|elastin microfibril interfacer 1	AK029337|Emilin1|100952|elastin microfibril interfacer 1
mm9_v1_chr10_+_21712008_21712034	0.0263921	HNF4A_NR2F1,2.p2	NM_001161849|Sgk1|20393|serum/glucocorticoid regulated kinase 1
mm9_v1_chrX_+_10294490_10294637	0.0263347	HNF4A_NR2F1,2.p2	NM_001166635|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	NM_026524|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK160062|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK090003|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK159166|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK172143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC004014|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	BC052899|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK151153|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr19_+_46402673_46402698	0.0261245	HNF4A_NR2F1,2.p2	NM_133694|Fbxl15|68431|F-box and leucine-rich repeat protein 15	AK172339|Fbxl15|68431|F-box and leucine-rich repeat protein 15	BC016499|Fbxl15|68431|F-box and leucine-rich repeat protein 15
mm9_v1_chr4_+_126850123_126850181	0.0260727	HNF4A_NR2F1,2.p2	AK158868|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr2_+_25356320_25356408	0.0259212	HNF4A_NR2F1,2.p2	AF176520|Fbxw5|30839|F-box and WD-40 domain protein 5	BC010776|Fbxw5|30839|F-box and WD-40 domain protein 5	AK154911|Fbxw5|30839|F-box and WD-40 domain protein 5
mm9_v1_chr11_+_78141923_78141987	0.0258925	HNF4A_NR2F1,2.p2	BC058979|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	NM_201406|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK166408|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK033331|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK043232|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK053771|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK039604|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK045759|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK142871|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK158128|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK169633|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK153300|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK151858|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S	AK152229|Pigs|276846|phosphatidylinositol glycan anchor biosynthesis, class S
mm9_v1_chr13_-_76236014_76236047	0.0258577	HNF4A_NR2F1,2.p2	AK035464|Arsk|77041|arylsulfatase K
mm9_v1_chr14_-_21299037_21299092	0.0257983	HNF4A_NR2F1,2.p2	L13129|Anxa7|11750|annexin A7
mm9_v1_chr14_+_56364551_56364563	0.0255683	HNF4A_NR2F1,2.p2	AK152732|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	AK159798|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene	AK146687|2610027L16Rik|67842|RIKEN cDNA 2610027L16 gene
mm9_v1_chr4_-_151401689_151401729	0.0253497	HNF4A_NR2F1,2.p2	AM161454|Zbtb48|100090|zinc finger and BTB domain containing 48
mm9_v1_chr6_-_113327779_113327831	0.0250424	HNF4A_NR2F1,2.p2	AK078906|Tada3|101206|transcriptional adaptor 3
mm9_v1_chr3_-_119486305_119486325	0.0248852	HNF4A_NR2F1,2.p2	AK135738|Ptbp2|56195|polypyrimidine tract binding protein 2	NM_019550|Ptbp2|56195|polypyrimidine tract binding protein 2
mm9_v1_chr4_-_116323979_116324063	0.0246816	HNF4A_NR2F1,2.p2	AK128906|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK186333|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK192030|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK210646|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK219186|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK009462|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	BC003850|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr17_+_34053120_34053173	0.0243342	HNF4A_NR2F1,2.p2	NM_020625|Zbtb22|81630|zinc finger and BTB domain containing 22	AK157161|Zbtb22|81630|zinc finger and BTB domain containing 22	AK159082|Zbtb22|81630|zinc finger and BTB domain containing 22	AK159789|Zbtb22|81630|zinc finger and BTB domain containing 22	AK155199|Zbtb22|81630|zinc finger and BTB domain containing 22	BC026964|Zbtb22|81630|zinc finger and BTB domain containing 22	BC052154|Zbtb22|81630|zinc finger and BTB domain containing 22
mm9_v1_chr2_-_181327165_181327210	0.0243118	HNF4A_NR2F1,2.p2	AK129308|Znf512b|269401|zinc finger protein 512B	NM_001164597|Znf512b|269401|zinc finger protein 512B
mm9_v1_chr5_-_17341512_17341522	0.0241976	HNF4A_NR2F1,2.p2	AK052825|Cd36|12491|CD36 antigen
mm9_v1_chr2_+_130389461_130389507	0.0240335	HNF4A_NR2F1,2.p2	AK169837|Mrps26|99045|mitochondrial ribosomal protein S26	AK131626|Mrps26|99045|mitochondrial ribosomal protein S26	BC048517|Mrps26|99045|mitochondrial ribosomal protein S26	NM_207207|Mrps26|99045|mitochondrial ribosomal protein S26
mm9_v1_chr7_-_112729716_112729793	0.0239232	HNF4A_NR2F1,2.p2	AF206720|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK164140|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK083830|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr8_+_126755253_126755502	0.0238644	HNF4A_NR2F1,2.p2	NM_139272|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK046567|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	BC059818|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK149609|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK145122|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AF348968|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK151536|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm9_v1_chr3_-_130951398_130951434	0.0237659	HNF4A_NR2F1,2.p2	AK169238|Hadh|15107|hydroxyacyl-Coenzyme A dehydrogenase
mm9_v1_chrX_-_131135346_131135571	0.0237591	HNF4A_NR2F1,2.p2	AK040081|Gla|11605|galactosidase, alpha	AK164231|Gla|11605|galactosidase, alpha	AK166204|Gla|11605|galactosidase, alpha	U50716|Gla|11605|galactosidase, alpha	AK145011|Gla|11605|galactosidase, alpha	AK166245|Gla|11605|galactosidase, alpha	U34071|Gla|11605|galactosidase, alpha	AK054547|Gla|11605|galactosidase, alpha	BC009021|Gla|11605|galactosidase, alpha	AK145148|Gla|11605|galactosidase, alpha	NM_013463|Gla|11605|galactosidase, alpha
mm9_v1_chr3_-_40886864_40886875	0.0236548	HNF4A_NR2F1,2.p2	AK014543|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr11_+_75275123_75275158	0.0234229	HNF4A_NR2F1,2.p2	AK018628|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene	AK008813|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene
mm9_v1_chr5_-_31260302_31260437	0.0233346	HNF4A_NR2F1,2.p2	AK202976|Preb|50907|prolactin regulatory element binding	AK179426|Preb|50907|prolactin regulatory element binding	AK197590|Preb|50907|prolactin regulatory element binding	AK206719|Preb|50907|prolactin regulatory element binding
mm9_v1_chr7_-_81429262_81429274	0.0232557	HNF4A_NR2F1,2.p2	AK020010|Slco3a1|108116|solute carrier organic anion transporter family, member 3a1
mm9_v1_chr10_-_126626878_126627109	0.0232233	HNF4A_NR2F1,2.p2	AK158684|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_001166413|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AF487515|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AK010452|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	BC041113|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_028027|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25
mm9_v1_chr10_-_80630518_80630667	0.0231144	HNF4A_NR2F1,2.p2	AK145367|Pias4|59004|protein inhibitor of activated STAT 4	AF109174|Pias4|59004|protein inhibitor of activated STAT 4
mm9_v1_chr14_-_66627993_66628046	0.0230367	HNF4A_NR2F1,2.p2	BC019856|Gulo|268756|gulonolactone (L-) oxidase	BC028822|Gulo|268756|gulonolactone (L-) oxidase	BC028828|Gulo|268756|gulonolactone (L-) oxidase	AK167460|Gulo|268756|gulonolactone (L-) oxidase	AK077740|Gulo|268756|gulonolactone (L-) oxidase	NM_178747|Gulo|268756|gulonolactone (L-) oxidase
mm9_v1_chr9_-_96379093_96379128	0.0230361	HNF4A_NR2F1,2.p2	AK006703|Rnf7|19823|ring finger protein 7
mm9_v1_chr13_-_41454331_41454333	0.0228678	HNF4A_NR2F1,2.p2	AK046357|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr1_+_34516590_34516643	0.0226521	HNF4A_NR2F1,2.p2	NM_011206|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	U52523|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	AK144353|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	U35124|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr11_-_60967744_60967833	0.0226327	HNF4A_NR2F1,2.p2	AK204675|Usp22|216825|ubiquitin specific peptidase 22
mm9_v1_chr15_-_81230036_81230148	0.0224401	HNF4A_NR2F1,2.p2	AK150686|St13|70356|suppression of tumorigenicity 13	AK151631|St13|70356|suppression of tumorigenicity 13	AK159149|St13|70356|suppression of tumorigenicity 13	AK013981|St13|70356|suppression of tumorigenicity 13	AK154658|St13|70356|suppression of tumorigenicity 13	AK146528|St13|70356|suppression of tumorigenicity 13	AK152270|St13|70356|suppression of tumorigenicity 13	BC003843|St13|70356|suppression of tumorigenicity 13	NM_133726|St13|70356|suppression of tumorigenicity 13	AK147169|St13|70356|suppression of tumorigenicity 13
mm9_v1_chr17_-_56144975_56145021	0.0222036	HNF4A_NR2F1,2.p2	BC026642|Stap2|106766|signal transducing adaptor family member 2	NM_145934|Stap2|106766|signal transducing adaptor family member 2	AK050172|Stap2|106766|signal transducing adaptor family member 2	AK050131|Stap2|106766|signal transducing adaptor family member 2
mm9_v1_chr11_-_101321789_101321881	0.0221669	HNF4A_NR2F1,2.p2	AK216339|Vat1|26949|vesicle amine transport protein 1 homolog (T californica)
mm9_v1_chr14_+_99697896_99697918	0.0221533	HNF4A_NR2F1,2.p2	AK051409|Klf5|12224|Kruppel-like factor 5	NM_009769|Klf5|12224|Kruppel-like factor 5	BC011307|Klf5|12224|Kruppel-like factor 5	BC012958|Klf5|12224|Kruppel-like factor 5
mm9_v1_chr11_-_102178559_102178600	0.0221291	HNF4A_NR2F1,2.p2	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr4_+_154999017_154999041	0.0220472	HNF4A_NR2F1,2.p2	BC052920|Cdk11b|12537|cyclin-dependent kinase 11B
mm9_v1_chr5_-_108561512_108561635	0.02195	HNF4A_NR2F1,2.p2	AK033463|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014065|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK140979|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK159813|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK170036|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC020076|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC132023|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	BC138226|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK151650|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK078317|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK042931|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	AK014490|Tmed5|73130|transmembrane emp24 protein transport domain containing 5	NM_028876|Tmed5|73130|transmembrane emp24 protein transport domain containing 5
mm9_v1_chr3_+_137004041_137004080	0.021893	HNF4A_NR2F1,2.p2	NM_001163522|Emcn|59308|endomucin	NM_016885|Emcn|59308|endomucin	AK145825|Emcn|59308|endomucin	AK002616|Emcn|59308|endomucin	AK029348|Emcn|59308|endomucin	BC003706|Emcn|59308|endomucin
mm9_v1_chr10_+_122116066_122116255	0.0216326	HNF4A_NR2F1,2.p2	AK040194|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK029461|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK150309|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr2_-_110203298_110203336	0.0216296	HNF4A_NR2F1,2.p2	AK011548|Fibin|67606|fin bud initiation factor homolog (zebrafish)	AK012026|Fibin|67606|fin bud initiation factor homolog (zebrafish)
mm9_v1_chr17_-_25410290_25410366	0.0215601	HNF4A_NR2F1,2.p2	X97575|Ube2i|22196|ubiquitin-conjugating enzyme E2I	BC037635|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK168706|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK166930|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK003141|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK011239|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK165606|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK089821|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK166016|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK167162|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK168766|Ube2i|22196|ubiquitin-conjugating enzyme E2I	U76416|Ube2i|22196|ubiquitin-conjugating enzyme E2I	U82627|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK012282|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK160988|Ube2i|22196|ubiquitin-conjugating enzyme E2I	X99739|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK160014|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK165615|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK168212|Ube2i|22196|ubiquitin-conjugating enzyme E2I	AK150575|Ube2i|22196|ubiquitin-conjugating enzyme E2I
mm9_v1_chr11_+_95343299_95343327	0.0215579	HNF4A_NR2F1,2.p2	
mm9_v1_chr13_-_101556356_101556493	0.0215301	HNF4A_NR2F1,2.p2	FJ931532|Ccnb1|268697|cyclin B1	AK143597|Ccnb1|268697|cyclin B1	BC080202|Ccnb1|268697|cyclin B1	X64713|Ccnb1|268697|cyclin B1	BC085238|Ccnb1|268697|cyclin B1	BC011478|Ccnb1|268697|cyclin B1	NM_172301|Ccnb1|268697|cyclin B1	X58708|Ccnb1|268697|cyclin B1	AK163259|Ccnb1|268697|cyclin B1	AK168993|Ccnb1|268697|cyclin B1	AK136259|Ccnb1|268697|cyclin B1	AK166686|Ccnb1|268697|cyclin B1	AK167950|Ccnb1|268697|cyclin B1	AK168441|Ccnb1|268697|cyclin B1	AK168502|Ccnb1|268697|cyclin B1	S43105|Ccnb1|268697|cyclin B1
mm9_v1_chr1_+_182837982_182838044	0.0213285	HNF4A_NR2F1,2.p2	AK187139|Pycr2|69051|pyrroline-5-carboxylate reductase family, member 2
mm9_v1_chr6_+_17231172_17231204	0.0212718	HNF4A_NR2F1,2.p2	AK151397|Cav2|12390|caveolin 2
mm9_v1_chr2_+_151822270_151822363	0.0212629	HNF4A_NR2F1,2.p2	AK029091|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK170158|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK009850|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene
mm9_v1_chr1_-_135804575_135804575	0.0212235	HNF4A_NR2F1,2.p2	AK153750|Optc|269120|opticin	NM_001160420|Optc|269120|opticin
mm9_v1_chr4_+_24825226_24825304	0.0211605	HNF4A_NR2F1,2.p2	NM_026742|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK160341|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK034728|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK019042|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	BC028764|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	AK003553|Ndufaf4|68493|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
mm9_v1_chr2_-_118199046_118199154	0.0209493	HNF4A_NR2F1,2.p2	BC052037|Gpr176|381413|G protein-coupled receptor 176	NM_201367|Gpr176|381413|G protein-coupled receptor 176
mm9_v1_chr3_-_54858963_54858976	0.0207637	HNF4A_NR2F1,2.p2	AK077114|Ccna1|12427|cyclin A1	NM_007628|Ccna1|12427|cyclin A1	X84311|Ccna1|12427|cyclin A1
mm9_v1_chr7_+_66484327_66484357	0.0207326	HNF4A_NR2F1,2.p2	
mm9_v1_chr8_-_125201971_125202083	0.0206183	HNF4A_NR2F1,2.p2	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr16_+_23224889_23224926	0.0205236	HNF4A_NR2F1,2.p2	BC096026|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1	AF153680|St6gal1|20440|beta galactoside alpha 2,6 sialyltransferase 1
mm9_v1_chr2_-_163245205_163245247	0.0204443	HNF4A_NR2F1,2.p2	BC005579|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	NM_025699|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK009708|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK014323|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK088622|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK153499|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK006969|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene
mm9_v1_chr2_-_180773777_180773949	0.0203392	HNF4A_NR2F1,2.p2	AY574263|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AF225912|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK083157|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK136886|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	BC053013|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	NM_015730|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK143938|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4	AK034228|Chrna4|11438|cholinergic receptor, nicotinic, alpha polypeptide 4
mm9_v1_chr9_+_108594526_108594578	0.0203373	HNF4A_NR2F1,2.p2	AK132728|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha	AK132824|Prkar2a|19087|protein kinase, cAMP dependent regulatory, type II alpha
mm9_v1_chr19_-_36763823_36763968	0.0201276	HNF4A_NR2F1,2.p2	AK142254|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chr6_-_88834347_88834425	0.0197966	HNF4A_NR2F1,2.p2	AK198580|Mcm2|17216|minichromosome maintenance deficient 2 mitotin (S. cerevisiae)
mm9_v1_chr11_+_117658973_117659056	0.0197728	HNF4A_NR2F1,2.p2	NM_029964|6030468B19Rik|77727|RIKEN cDNA 6030468B19 gene	AK020081|6030468B19Rik|77727|RIKEN cDNA 6030468B19 gene
mm9_v1_chr3_-_88265103_88265103	0.0196832	HNF4A_NR2F1,2.p2	NM_001163489|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	X85991|Sema4a|20351|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm9_v1_chr12_-_81269174_81269180	0.0193697	HNF4A_NR2F1,2.p2	AK037382|Actn1|109711|actinin, alpha 1
mm9_v1_chr14_-_19103447_19103585	0.0193382	HNF4A_NR2F1,2.p2	BC081441|Rpl15|66480|ribosomal protein L15	BC079842|Rpl15|66480|ribosomal protein L15	AK012423|Rpl15|66480|ribosomal protein L15	AK151138|Rpl15|66480|ribosomal protein L15	AK152711|Rpl15|66480|ribosomal protein L15	AK169662|Rpl15|66480|ribosomal protein L15	AK002234|Rpl15|66480|ribosomal protein L15	AK012025|Rpl15|66480|ribosomal protein L15	AK167996|Rpl15|66480|ribosomal protein L15	AK159183|Rpl15|66480|ribosomal protein L15	AK159626|Rpl15|66480|ribosomal protein L15	AK010674|Rpl15|66480|ribosomal protein L15	AK010319|Rpl15|66480|ribosomal protein L15	AK010916|Rpl15|66480|ribosomal protein L15	AK010931|Rpl15|66480|ribosomal protein L15	AK168125|Rpl15|66480|ribosomal protein L15	NM_025586|Rpl15|66480|ribosomal protein L15	BC087917|Rpl15|66480|ribosomal protein L15
mm9_v1_chr9_-_106368268_106368278	0.019321	HNF4A_NR2F1,2.p2	NM_001159652|Gpr62|436090|G protein-coupled receptor 62
mm9_v1_chr10_+_77888414_77888501	0.0189031	HNF4A_NR2F1,2.p2	NM_007793|Cstb|13014|cystatin B	AK002403|Cstb|13014|cystatin B	BC056170|Cstb|13014|cystatin B	AK151205|Cstb|13014|cystatin B
mm9_v1_chrX_-_156576261_156576298	0.0188648	HNF4A_NR2F1,2.p2	BC007142|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	NM_008810|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK148459|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1	AK167987|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr11_-_33047217_33047399	0.0186917	HNF4A_NR2F1,2.p2	AK078245|Fgf18|14172|fibroblast growth factor 18	AB004639|Fgf18|14172|fibroblast growth factor 18	AF211187|Fgf18|14172|fibroblast growth factor 18	AF075291|Fgf18|14172|fibroblast growth factor 18	NM_008005|Fgf18|14172|fibroblast growth factor 18
mm9_v1_chr12_+_114378368_114378447	0.0186083	HNF4A_NR2F1,2.p2	NM_024223|Crip2|68337|cysteine rich protein 2
mm9_v1_chr13_+_24706474_24706497	0.018529	HNF4A_NR2F1,2.p2	AK041665|Fam65b|193385|family with sequence similarity 65, member B	NM_178658|Fam65b|193385|family with sequence similarity 65, member B	AK036452|Fam65b|193385|family with sequence similarity 65, member B	AK040887|Fam65b|193385|family with sequence similarity 65, member B
mm9_v1_chr9_+_40590943_40591093	0.0184737	HNF4A_NR2F1,2.p2	AK033766|9030425E11Rik|71566|RIKEN cDNA 9030425E11 gene
mm9_v1_chr4_+_151460980_151461016	0.0184269	HNF4A_NR2F1,2.p2	AK154912|Plekhg5|269608|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm9_v1_chr17_-_57289073_57289199	0.0183834	HNF4A_NR2F1,2.p2	U78091|Cd70|21948|CD70 antigen	BC125407|Cd70|21948|CD70 antigen	BC125409|Cd70|21948|CD70 antigen	NM_011617|Cd70|21948|CD70 antigen	Y13636|Cd70|21948|CD70 antigen
mm9_v1_chr13_+_34967499_34967514	0.0182956	HNF4A_NR2F1,2.p2	AB516304|Prpf4b|19134|PRP4 pre-mRNA processing factor 4 homolog B (yeast)
mm9_v1_chr5_-_38871369_38871544	0.0181982	HNF4A_NR2F1,2.p2	AF490463|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK037093|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK172234|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AK156740|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	AF469480|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102414|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9	NM_001102415|Slc2a9|117591|solute carrier family 2 (facilitated glucose transporter), member 9
mm9_v1_chr3_-_107820705_107820751	0.0181831	HNF4A_NR2F1,2.p2	J03952|Gstm1|14862|glutathione S-transferase, mu 1	BC003822|Gstm1|14862|glutathione S-transferase, mu 1	BC091763|Gstm1|14862|glutathione S-transferase, mu 1	BC046758|Gstm1|14862|glutathione S-transferase, mu 1
mm9_v1_chr2_+_151931424_151931452	0.0179203	HNF4A_NR2F1,2.p2	AK161066|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	BC011325|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)
mm9_v1_chr9_+_110283518_110283612	0.0175792	HNF4A_NR2F1,2.p2	
mm9_v1_chr11_+_57917469_57917691	0.0174834	HNF4A_NR2F1,2.p2	AK150757|Cnot8|69125|CCR4-NOT transcription complex, subunit 8	AK153907|Cnot8|69125|CCR4-NOT transcription complex, subunit 8	BC004040|Cnot8|69125|CCR4-NOT transcription complex, subunit 8	NM_026949|Cnot8|69125|CCR4-NOT transcription complex, subunit 8	AK075727|Cnot8|69125|CCR4-NOT transcription complex, subunit 8	AY515608|Cnot8|69125|CCR4-NOT transcription complex, subunit 8
mm9_v1_chr11_-_118162557_118162687	0.0174717	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_+_25688004_25688107	0.017427	HNF4A_NR2F1,2.p2	NM_001130150|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	NM_001130151|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	NM_001130153|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	NM_008488|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK043027|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK012156|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK051518|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK040093|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK172354|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK157056|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	U58203|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK162482|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1	AK131181|Arhgef1|16801|Rho guanine nucleotide exchange factor (GEF) 1
mm9_v1_chr7_-_20044133_20044198	0.0174129	HNF4A_NR2F1,2.p2	AK146784|Mark4|232944|MAP/microtubule affinity-regulating kinase 4
mm9_v1_chr12_-_25323807_25323931	0.0171764	HNF4A_NR2F1,2.p2	AK216072|Cox7a2l|20463|cytochrome c oxidase subunit VIIa polypeptide 2-like
mm9_v1_chr5_-_34517234_34517339	0.017153	HNF4A_NR2F1,2.p2	AK013062|Mxd4|17122|Max dimerization protein 4
mm9_v1_chr3_+_96501030_96501050	0.0170913	HNF4A_NR2F1,2.p2	BC050988|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr7_-_117509277_117509385	0.0170905	HNF4A_NR2F1,2.p2	BC015069|Sbf2|319934|SET binding factor 2
mm9_v1_chr8_+_87189015_87189026	0.01692	HNF4A_NR2F1,2.p2	
mm9_v1_chr13_+_49474730_49474801	0.0168384	HNF4A_NR2F1,2.p2	AK189233|Bicd2|76895|bicaudal D homolog 2 (Drosophila)
mm9_v1_chr11_+_120645722_120645897	0.0167219	HNF4A_NR2F1,2.p2	BC003350|Gps1|209318|G protein pathway suppressor 1	NM_145370|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr17_-_23782209_23782235	0.0166372	HNF4A_NR2F1,2.p2	BC059059|Mmp25|240047|matrix metallopeptidase 25	AK154458|Mmp25|240047|matrix metallopeptidase 25	NM_001033339|Mmp25|240047|matrix metallopeptidase 25
mm9_v1_chr19_+_59335367_59335452	0.0165463	HNF4A_NR2F1,2.p2	NM_172523|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK035644|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK033871|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK041274|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	AK034368|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2	BC078449|Slc18a2|214084|solute carrier family 18 (vesicular monoamine), member 2
mm9_v1_chr17_+_5341444_5341585	0.0164503	HNF4A_NR2F1,2.p2	AK135725|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK033272|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK139800|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr10_-_77734341_77734501	0.0162586	HNF4A_NR2F1,2.p2	
mm9_v1_chr7_-_52494453_52494466	0.0162095	HNF4A_NR2F1,2.p2	AK154466|Cd37|12493|CD37 antigen
mm9_v1_chr1_-_39535525_39535591	0.0161614	HNF4A_NR2F1,2.p2	BC065081|Tbc1d8|54610|TBC1 domain family, member 8	AK141816|Tbc1d8|54610|TBC1 domain family, member 8	AK141520|Tbc1d8|54610|TBC1 domain family, member 8	AK138630|Tbc1d8|54610|TBC1 domain family, member 8	NM_018775|Tbc1d8|54610|TBC1 domain family, member 8
mm9_v1_chr19_+_41557168_41557205	0.0160741	HNF4A_NR2F1,2.p2	AK077424|Lcor|212391|ligand dependent nuclear receptor corepressor	AB076079|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chr8_-_113551636_113551700	0.0160528	HNF4A_NR2F1,2.p2	AK147499|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	AK013362|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_001190800|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	NM_172284|Ddx19b|234733|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
mm9_v1_chr8_+_122516412_122516427	0.0160517	HNF4A_NR2F1,2.p2	AK149909|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2	AK149925|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2	AK150180|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2	AK132171|Crispld2|78892|cysteine-rich secretory protein LCCL domain containing 2
mm9_v1_chr2_-_126943852_126943869	0.0159539	HNF4A_NR2F1,2.p2	AK193653|Ncaph|215387|non-SMC condensin I complex, subunit H
mm9_v1_chr2_-_25439345_25439437	0.0158303	HNF4A_NR2F1,2.p2	
mm9_v1_chr8_+_36740640_36740782	0.0157982	HNF4A_NR2F1,2.p2	AK010068|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr19_-_56622636_56622751	0.0156453	HNF4A_NR2F1,2.p2	AK029794|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)	BC076617|Dclre1a|55947|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm9_v1_chr11_-_77326748_77326921	0.0155831	HNF4A_NR2F1,2.p2	BC147324|Trp53i13|216964|transformation related protein 53 inducible protein 13	BC147325|Trp53i13|216964|transformation related protein 53 inducible protein 13	NM_001024920|Trp53i13|216964|transformation related protein 53 inducible protein 13
mm9_v1_chr6_-_124694973_124695025	0.0154593	HNF4A_NR2F1,2.p2	BC022946|Atn1|13498|atrophin 1
mm9_v1_chr5_+_77694506_77694565	0.015411	HNF4A_NR2F1,2.p2	AK004945|Rest|19712|RE1-silencing transcription factor	NM_011263|Rest|19712|RE1-silencing transcription factor	AK156514|Rest|19712|RE1-silencing transcription factor
mm9_v1_chr2_+_120229988_120230073	0.015371	HNF4A_NR2F1,2.p2	BC058197|Ganc|76051|glucosidase, alpha; neutral C
mm9_v1_chr9_-_119835967_119836242	0.0153021	HNF4A_NR2F1,2.p2	AK198424|Gorasp1|74498|golgi reassembly stacking protein 1	AK209806|Gorasp1|74498|golgi reassembly stacking protein 1	AK213744|Gorasp1|74498|golgi reassembly stacking protein 1	AK204247|Gorasp1|74498|golgi reassembly stacking protein 1
mm9_v1_chr10_-_117261663_117261731	0.0151662	HNF4A_NR2F1,2.p2	M79314|Rap1b|215449|RAS related protein 1b	BC147700|Rap1b|215449|RAS related protein 1b	BC147713|Rap1b|215449|RAS related protein 1b
mm9_v1_chr4_+_130219299_130219334	0.0150503	HNF4A_NR2F1,2.p2	BC050747|Pum1|80912|pumilio 1 (Drosophila)	AK147185|Pum1|80912|pumilio 1 (Drosophila)	AF321909|Pum1|80912|pumilio 1 (Drosophila)	BC048174|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr5_-_115108377_115108429	0.0150386	HNF4A_NR2F1,2.p2	BC127052|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AF208026|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AK083223|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AF279672|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	AK002735|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4	NM_022017|Trpv4|63873|transient receptor potential cation channel, subfamily V, member 4
mm9_v1_chr12_+_84973146_84973375	0.0150012	HNF4A_NR2F1,2.p2	NM_027349|Rbm25|67039|RNA binding motif protein 25	AK011403|Rbm25|67039|RNA binding motif protein 25	AK164367|Rbm25|67039|RNA binding motif protein 25	AK151910|Rbm25|67039|RNA binding motif protein 25	AK144341|AA645497|100499479|expressed sequence AA645497
mm9_v1_chr9_-_62828677_62828715	0.0149208	HNF4A_NR2F1,2.p2	AF077950|Pias1|56469|protein inhibitor of activated STAT 1	BC051417|Pias1|56469|protein inhibitor of activated STAT 1	AK075708|Pias1|56469|protein inhibitor of activated STAT 1	NM_019663|Pias1|56469|protein inhibitor of activated STAT 1	AK153871|Pias1|56469|protein inhibitor of activated STAT 1
mm9_v1_chr4_-_137923869_137923874	0.0148167	HNF4A_NR2F1,2.p2	BC050114|Cda|72269|cytidine deaminase	NM_028176|Cda|72269|cytidine deaminase	AK008793|Cda|72269|cytidine deaminase
mm9_v1_chr9_+_44307218_44307218	0.0147457	HNF4A_NR2F1,2.p2	AY296058|Bcl9l|80288|B-cell CLL/lymphoma 9-like	NM_030256|Bcl9l|80288|B-cell CLL/lymphoma 9-like
mm9_v1_chr6_+_124948627_124948627	0.0146183	HNF4A_NR2F1,2.p2	AK148352|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145926|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr14_+_41964744_41964800	0.0145229	HNF4A_NR2F1,2.p2	NM_010775|Mbl1|17194|mannose-binding lectin (protein A) 1	S42292|Mbl1|17194|mannose-binding lectin (protein A) 1	AK034788|Mbl1|17194|mannose-binding lectin (protein A) 1	BC012245|Mbl1|17194|mannose-binding lectin (protein A) 1	BC021762|Mbl1|17194|mannose-binding lectin (protein A) 1	D11441|Mbl1|17194|mannose-binding lectin (protein A) 1
mm9_v1_chr3_+_88342459_88342597	0.014384	HNF4A_NR2F1,2.p2	AK012557|Mex3a|72640|mex3 homolog A (C. elegans)
mm9_v1_chr17_+_29751754_29752001	0.0141381	HNF4A_NR2F1,2.p2	AK147168|Rnf8|58230|ring finger protein 8	BC021778|Rnf8|58230|ring finger protein 8	NM_021419|Rnf8|58230|ring finger protein 8	AK076180|Rnf8|58230|ring finger protein 8	CT010295|Rnf8|58230|ring finger protein 8	AK219887|Rnf8|58230|ring finger protein 8
mm9_v1_chr3_+_116297899_116297929	0.0140194	HNF4A_NR2F1,2.p2	AK013338|Sass6|72776|spindle assembly 6 homolog (C. elegans)	BC050110|Sass6|72776|spindle assembly 6 homolog (C. elegans)	NM_028349|Sass6|72776|spindle assembly 6 homolog (C. elegans)	AK145076|Sass6|72776|spindle assembly 6 homolog (C. elegans)	AK165224|Sass6|72776|spindle assembly 6 homolog (C. elegans)
mm9_v1_chr19_+_53977901_53977958	0.0139861	HNF4A_NR2F1,2.p2	BC055739|Pdcd4|18569|programmed cell death 4	D86344|Pdcd4|18569|programmed cell death 4
mm9_v1_chr3_+_103613439_103613567	0.0139218	HNF4A_NR2F1,2.p2	NM_001163552|Ap4b1|67489|adaptor-related protein complex AP-4, beta 1	NM_001163553|Ap4b1|67489|adaptor-related protein complex AP-4, beta 1	NM_026193|Ap4b1|67489|adaptor-related protein complex AP-4, beta 1	BC054092|Ap4b1|67489|adaptor-related protein complex AP-4, beta 1	AK165570|Ap4b1|67489|adaptor-related protein complex AP-4, beta 1	AK007733|Ap4b1|67489|adaptor-related protein complex AP-4, beta 1	BC056200|Ap4b1|67489|adaptor-related protein complex AP-4, beta 1
mm9_v1_chr18_+_65857921_65857924	0.0137859	HNF4A_NR2F1,2.p2	AK030604|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene	NM_177028|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene	AK030615|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene	BC141265|5330437I02Rik|319888|RIKEN cDNA 5330437I02 gene
mm9_v1_chr6_-_85463535_85463588	0.0137629	HNF4A_NR2F1,2.p2	NM_020596|Egr4|13656|early growth response 4	AK141637|Egr4|13656|early growth response 4
mm9_v1_chr18_+_24812370_24812394	0.0136646	HNF4A_NR2F1,2.p2	AK076385|Mocos|68591|molybdenum cofactor sulfurase	BC016223|Mocos|68591|molybdenum cofactor sulfurase
mm9_v1_chr4_+_114761312_114761366	0.0136597	HNF4A_NR2F1,2.p2	NM_001164557|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_001164558|Pdzk1ip1|67182|PDZK1 interacting protein 1	NM_026018|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK007936|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK008253|Pdzk1ip1|67182|PDZK1 interacting protein 1	AK012305|Pdzk1ip1|67182|PDZK1 interacting protein 1
mm9_v1_chr2_-_7002287_7002310	0.0135708	HNF4A_NR2F1,2.p2	AK137292|Celf2|14007|CUGBP, Elav-like family member 2	AK164914|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr19_-_5424856_5425071	0.0134719	HNF4A_NR2F1,2.p2	BC002090|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	NM_024176|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)	AK010152|Drap1|66556|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm9_v1_chr15_+_76181718_76181819	0.0134541	HNF4A_NR2F1,2.p2	NM_001164607|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_001164608|Maf1|68877|MAF1 homolog (S. cerevisiae)	NM_026859|Maf1|68877|MAF1 homolog (S. cerevisiae)	BC016260|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK154047|Maf1|68877|MAF1 homolog (S. cerevisiae)	AK042913|Maf1|68877|MAF1 homolog (S. cerevisiae)
mm9_v1_chr11_-_106349097_106349184	0.0134234	HNF4A_NR2F1,2.p2	AB031332|Ern1|78943|endoplasmic reticulum (ER) to nucleus signalling 1	NM_023913|Ern1|78943|endoplasmic reticulum (ER) to nucleus signalling 1	AK077041|Ern1|78943|endoplasmic reticulum (ER) to nucleus signalling 1	AK170988|Ern1|78943|endoplasmic reticulum (ER) to nucleus signalling 1	AK018505|Ern1|78943|endoplasmic reticulum (ER) to nucleus signalling 1	AK083891|Ern1|78943|endoplasmic reticulum (ER) to nucleus signalling 1	AK080709|Ern1|78943|endoplasmic reticulum (ER) to nucleus signalling 1
mm9_v1_chr1_-_184447489_184447526	0.0131328	HNF4A_NR2F1,2.p2	Y10139|Capn2|12334|calpain 2
mm9_v1_chr15_-_97976050_97976072	0.0130773	HNF4A_NR2F1,2.p2	BC025106|Asb8|78541|ankyrin repeat and SOCS box-containing 8	AF398969|Asb8|78541|ankyrin repeat and SOCS box-containing 8	AK021239|Asb8|78541|ankyrin repeat and SOCS box-containing 8
mm9_v1_chr16_+_41532938_41533160	0.0130745	HNF4A_NR2F1,2.p2	BC059067|Lsamp|268890|limbic system-associated membrane protein	AK158702|Lsamp|268890|limbic system-associated membrane protein	AK030681|Lsamp|268890|limbic system-associated membrane protein
mm9_v1_chrX_-_71156567_71156646	0.0129433	HNF4A_NR2F1,2.p2	AF443826|Arhgap4|171207|Rho GTPase activating protein 4	BC109001|Arhgap4|171207|Rho GTPase activating protein 4	BC109002|Arhgap4|171207|Rho GTPase activating protein 4	AY183124|Arhgap4|171207|Rho GTPase activating protein 4	AY183125|Arhgap4|171207|Rho GTPase activating protein 4	AY183126|Arhgap4|171207|Rho GTPase activating protein 4	AY183127|Arhgap4|171207|Rho GTPase activating protein 4	AY183128|Arhgap4|171207|Rho GTPase activating protein 4	AY183129|Arhgap4|171207|Rho GTPase activating protein 4	AY183130|Arhgap4|171207|Rho GTPase activating protein 4	AY183131|Arhgap4|171207|Rho GTPase activating protein 4	AY183132|Arhgap4|171207|Rho GTPase activating protein 4	AY183133|Arhgap4|171207|Rho GTPase activating protein 4	AK157294|Arhgap4|171207|Rho GTPase activating protein 4	AK169865|Arhgap4|171207|Rho GTPase activating protein 4	AK037344|Arhgap4|171207|Rho GTPase activating protein 4	NM_001162423|Arhgap4|171207|Rho GTPase activating protein 4	NM_001162424|Arhgap4|171207|Rho GTPase activating protein 4	NM_138630|Arhgap4|171207|Rho GTPase activating protein 4
mm9_v1_chr1_+_58502448_58502459	0.0129175	HNF4A_NR2F1,2.p2	BC089475|Nif3l1|65102|Ngg1 interacting factor 3-like 1 (S. pombe)	AK011670|Nif3l1|65102|Ngg1 interacting factor 3-like 1 (S. pombe)
mm9_v1_chr2_+_155343767_155343780	0.0126755	HNF4A_NR2F1,2.p2	BC051432|Acss2|60525|acyl-CoA synthetase short-chain family member 2	NM_019811|Acss2|60525|acyl-CoA synthetase short-chain family member 2
mm9_v1_chr10_+_107599446_107599460	0.0126748	HNF4A_NR2F1,2.p2	AK004785|Ppp1r12a|17931|protein phosphatase 1, regulatory (inhibitor) subunit 12A	NM_027892|Ppp1r12a|17931|protein phosphatase 1, regulatory (inhibitor) subunit 12A
mm9_v1_chr12_-_77811533_77811533	0.0126451	HNF4A_NR2F1,2.p2	AK147299|Spnb1|20741|spectrin beta 1	NM_013675|Spnb1|20741|spectrin beta 1
mm9_v1_chr9_+_123438903_123439004	0.0125553	HNF4A_NR2F1,2.p2	AK089174|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK171080|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK122390|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	EF437383|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AK161111|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	NM_030692|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	AJ297526|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117752|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)	BC117753|Sacm1l|83493|SAC1 (suppressor of actin mutations 1, homolog)-like (S. cerevisiae)
mm9_v1_chr11_-_94900779_94900799	0.0124915	HNF4A_NR2F1,2.p2	AK181188|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK192357|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK194016|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK216417|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK218086|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2
mm9_v1_chrX_-_138824873_138824925	0.0121852	HNF4A_NR2F1,2.p2	BC058663|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	AB033885|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	AB033886|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	AB033887|Acsl4|50790|acyl-CoA synthetase long-chain family member 4	AJ243502|Acsl4|50790|acyl-CoA synthetase long-chain family member 4
mm9_v1_chr11_+_96133224_96133235	0.0121009	HNF4A_NR2F1,2.p2	M34857|Hoxb9|15417|homeobox B9
mm9_v1_chr2_-_168487517_168487591	0.0120936	HNF4A_NR2F1,2.p2	
mm9_v1_chr2_+_76244559_76244570	0.0120773	HNF4A_NR2F1,2.p2	AK004353|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr14_+_56178853_56178921	0.0120024	HNF4A_NR2F1,2.p2	NM_133734|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK033540|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK170657|Dcaf11|28199|DDB1 and CUL4 associated factor 11	AK158784|Dcaf11|28199|DDB1 and CUL4 associated factor 11
mm9_v1_chr3_-_40886957_40886982	0.0119635	HNF4A_NR2F1,2.p2	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr15_+_8918001_8918118	0.0118838	HNF4A_NR2F1,2.p2	AK048152|Ranbp3l|223332|RAN binding protein 3-like	AK132406|Ranbp3l|223332|RAN binding protein 3-like	BC058706|Ranbp3l|223332|RAN binding protein 3-like	NM_198024|Ranbp3l|223332|RAN binding protein 3-like
mm9_v1_chr7_+_146038066_146038078	0.0117604	HNF4A_NR2F1,2.p2	BC066022|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform	NM_026391|Ppp2r2d|52432|protein phosphatase 2, regulatory subunit B, delta isoform
mm9_v1_chr4_+_43591798_43591856	0.0115422	HNF4A_NR2F1,2.p2	BC086614|Rgp1|242406|RGP1 retrograde golgi transport homolog (S. cerevisiae)	AK170117|Rgp1|242406|RGP1 retrograde golgi transport homolog (S. cerevisiae)	AK129103|Rgp1|242406|RGP1 retrograde golgi transport homolog (S. cerevisiae)	AK089288|Rgp1|242406|RGP1 retrograde golgi transport homolog (S. cerevisiae)
mm9_v1_chr7_+_53289065_53289193	0.0114907	HNF4A_NR2F1,2.p2	NM_153057|Nomo1|211548|nodal modulator 1	AK035957|Nomo1|211548|nodal modulator 1	AK142338|Nomo1|211548|nodal modulator 1	AK030584|Nomo1|211548|nodal modulator 1	AK150107|Nomo1|211548|nodal modulator 1	BC072630|Nomo1|211548|nodal modulator 1	AK082495|Nomo1|211548|nodal modulator 1
mm9_v1_chr1_-_51972816_51972829	0.0113007	HNF4A_NR2F1,2.p2	NM_001161817|Myo1b|17912|myosin IB	NM_010863|Myo1b|17912|myosin IB
mm9_v1_chr11_-_69476100_69476163	0.0111764	HNF4A_NR2F1,2.p2	AK080233|Mpdu1|24070|mannose-P-dolichol utilization defect 1	NM_011900|Mpdu1|24070|mannose-P-dolichol utilization defect 1
mm9_v1_chr1_-_121318824_121318824	0.011124	HNF4A_NR2F1,2.p2	AK132352|Inhbb|16324|inhibin beta-B	NM_008381|Inhbb|16324|inhibin beta-B
mm9_v1_chr7_-_97624492_97624501	0.0110598	HNF4A_NR2F1,2.p2	
mm9_v1_chr6_-_146450669_146450707	0.0110418	HNF4A_NR2F1,2.p2	AK169446|Itpr2|16439|inositol 1,4,5-triphosphate receptor 2
mm9_v1_chr17_-_46815418_46815568	0.010983	HNF4A_NR2F1,2.p2	
mm9_v1_chr13_-_108516475_108516490	0.0109258	HNF4A_NR2F1,2.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr5_-_143942408_143942453	0.0108925	HNF4A_NR2F1,2.p2	AF226870|Rbak|57782|RB-associated KRAB repressor	NM_001045482|Rbak|57782|RB-associated KRAB repressor	NM_021326|Rbak|57782|RB-associated KRAB repressor	AK051009|Rbak|57782|RB-associated KRAB repressor
mm9_v1_chr2_+_25413360_25413471	0.0108494	HNF4A_NR2F1,2.p2	AK003557|Edf1|59022|endothelial differentiation-related factor 1	AK002345|Edf1|59022|endothelial differentiation-related factor 1	AK010191|Edf1|59022|endothelial differentiation-related factor 1	AB030185|Edf1|59022|endothelial differentiation-related factor 1	NM_021519|Edf1|59022|endothelial differentiation-related factor 1	BC023472|Edf1|59022|endothelial differentiation-related factor 1	AJ309569|Edf1|59022|endothelial differentiation-related factor 1
mm9_v1_chr2_-_130223285_130223364	0.0107853	HNF4A_NR2F1,2.p2	BC003713|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	AF077738|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	NM_019696|Cpxm1|56264|carboxypeptidase X 1 (M14 family)
mm9_v1_chr11_+_61770311_61770311	0.0105726	HNF4A_NR2F1,2.p2	AK032662|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chr15_-_74502981_74503002	0.0105424	HNF4A_NR2F1,2.p2	AF162777|Arc|11838|activity regulated cytoskeletal-associated protein	BC023127|Arc|11838|activity regulated cytoskeletal-associated protein	AK170446|Arc|11838|activity regulated cytoskeletal-associated protein	AK157822|Arc|11838|activity regulated cytoskeletal-associated protein	NM_018790|Arc|11838|activity regulated cytoskeletal-associated protein
mm9_v1_chr7_+_105805420_105805457	0.0104303	HNF4A_NR2F1,2.p2	
mm9_v1_chr11_-_60717472_60717561	0.0103798	HNF4A_NR2F1,2.p2	
mm9_v1_chr19_+_18787654_18787754	0.010331	HNF4A_NR2F1,2.p2	AK145019|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK155389|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	AK083631|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	NM_177640|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene	BC020125|D030056L22Rik|225995|RIKEN cDNA D030056L22 gene
mm9_v1_chr13_+_42147389_42147402	0.0103267	HNF4A_NR2F1,2.p2	AK039808|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1	NM_007772|Hivep1|110521|human immunodeficiency virus type I enhancer binding protein 1
mm9_v1_chr11_-_50051972_50051973	0.0102871	HNF4A_NR2F1,2.p2	BC028760|Ltc4s|17001|leukotriene C4 synthase	NM_008521|Ltc4s|17001|leukotriene C4 synthase	U27195|Ltc4s|17001|leukotriene C4 synthase
mm9_v1_chr7_-_134358872_134358952	0.0100279	HNF4A_NR2F1,2.p2	
mm9_v1_chr10_+_75052084_75052401	0.00996004	HNF4A_NR2F1,2.p2	AK140308|Ggt5|23887|gamma-glutamyltransferase 5	AK049084|Ggt5|23887|gamma-glutamyltransferase 5	AK052183|Ggt5|23887|gamma-glutamyltransferase 5	BC089585|Ggt5|23887|gamma-glutamyltransferase 5	NM_011820|Ggt5|23887|gamma-glutamyltransferase 5	AK085788|Ggt5|23887|gamma-glutamyltransferase 5	AF077765|Ggt5|23887|gamma-glutamyltransferase 5	AK170326|Ggt5|23887|gamma-glutamyltransferase 5	BC051971|Ggt5|23887|gamma-glutamyltransferase 5	BC113775|Ggt5|23887|gamma-glutamyltransferase 5
mm9_v1_chr5_+_8056508_8056593	0.00994142	HNF4A_NR2F1,2.p2	AK134747|Sri|109552|sorcin	NM_001080974|Sri|109552|sorcin	AK146071|Sri|109552|sorcin	AK146911|Sri|109552|sorcin	AK168572|Sri|109552|sorcin	AK168792|Sri|109552|sorcin	AK168900|Sri|109552|sorcin	BC065790|Sri|109552|sorcin
mm9_v1_chr6_+_113342490_113342490	0.0098651	HNF4A_NR2F1,2.p2	AM690746|Ttll3|101100|tubulin tyrosine ligase-like family, member 3	NM_133923|Ttll3|101100|tubulin tyrosine ligase-like family, member 3
mm9_v1_chr3_-_66785062_66785239	0.00981542	HNF4A_NR2F1,2.p2	U67055|Shox2|20429|short stature homeobox 2	AK145063|Shox2|20429|short stature homeobox 2	AK032007|Shox2|20429|short stature homeobox 2
mm9_v1_chr13_-_8870231_8870293	0.00970408	HNF4A_NR2F1,2.p2	AK129254|Wdr37|207615|WD repeat domain 37	AK032582|Wdr37|207615|WD repeat domain 37	AK146209|Wdr37|207615|WD repeat domain 37	AK014128|Wdr37|207615|WD repeat domain 37	AK044740|Wdr37|207615|WD repeat domain 37	AK036203|Wdr37|207615|WD repeat domain 37	NM_001039389|Wdr37|207615|WD repeat domain 37	NM_172445|Wdr37|207615|WD repeat domain 37
mm9_v1_chr3_+_67178016_67178018	0.00965774	HNF4A_NR2F1,2.p2	AK007292|Mlf1|17349|myeloid leukemia factor 1	AK133448|Mlf1|17349|myeloid leukemia factor 1	NM_001039543|Mlf1|17349|myeloid leukemia factor 1	NM_010801|Mlf1|17349|myeloid leukemia factor 1
mm9_v1_chr4_+_62021728_62021759	0.00950134	HNF4A_NR2F1,2.p2	NM_175090|Slc31a1|20529|solute carrier family 31, member 1	AK151337|Slc31a1|20529|solute carrier family 31, member 1
mm9_v1_chr2_-_155652217_155652350	0.00925005	HNF4A_NR2F1,2.p2	AK165946|Eif6|16418|eukaryotic translation initiation factor 6
mm9_v1_chr3_+_89580481_89580505	0.00921161	HNF4A_NR2F1,2.p2	BC060966|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr19_-_47611490_47611555	0.00918774	HNF4A_NR2F1,2.p2	AK075574|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	NM_175360|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK180038|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK164386|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	AK135228|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1	BC029548|Obfc1|108689|oligonucleotide/oligosaccharide-binding fold containing 1
mm9_v1_chr19_+_5425119_5425264	0.00910661	HNF4A_NR2F1,2.p2	NM_134149|AI837181|107242|expressed sequence AI837181	BC024516|AI837181|107242|expressed sequence AI837181	BC017542|AI837181|107242|expressed sequence AI837181	U64690|AI837181|107242|expressed sequence AI837181
mm9_v1_chr4_+_132754604_132754753	0.00907943	HNF4A_NR2F1,2.p2	
mm9_v1_chrX_+_109714134_109714134	0.00889218	HNF4A_NR2F1,2.p2	AK038956|Zfp711|245595|zinc finger protein 711	NM_177747|Zfp711|245595|zinc finger protein 711
mm9_v1_chr10_-_4752710_4752812	0.00886277	HNF4A_NR2F1,2.p2	AK054222|Myct1|68632|myc target 1	AK030706|Myct1|68632|myc target 1	AK142963|Myct1|68632|myc target 1	BC096559|Myct1|68632|myc target 1	AY090114|Myct1|68632|myc target 1	AK003845|Myct1|68632|myc target 1	NM_026793|Myct1|68632|myc target 1
mm9_v1_chr2_+_26772222_26772291	0.00881079	HNF4A_NR2F1,2.p2	AK216211|Surf2|20931|surfeit gene 2	AK004931|Surf2|20931|surfeit gene 2
mm9_v1_chr4_+_122878746_122878795	0.00878292	HNF4A_NR2F1,2.p2	BC147308|Nt5c1a|230718|5'-nucleotidase, cytosolic IA	BC147309|Nt5c1a|230718|5'-nucleotidase, cytosolic IA	BC147730|Nt5c1a|230718|5'-nucleotidase, cytosolic IA	BC147733|Nt5c1a|230718|5'-nucleotidase, cytosolic IA	NM_001085502|Nt5c1a|230718|5'-nucleotidase, cytosolic IA
mm9_v1_chr15_-_79158526_79158679	0.00866358	HNF4A_NR2F1,2.p2	BC049778|Pla2g6|53357|phospholipase A2, group VI	BC003487|Pla2g6|53357|phospholipase A2, group VI	AK153333|Pla2g6|53357|phospholipase A2, group VI	BC052845|Pla2g6|53357|phospholipase A2, group VI	AK144495|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr10_+_127525425_127525449	0.00849233	HNF4A_NR2F1,2.p2	AK003460|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr13_-_69877709_69877899	0.00817899	HNF4A_NR2F1,2.p2	BC058543|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116979|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116981|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr9_+_110148568_110148708	0.00778655	HNF4A_NR2F1,2.p2	AF461091|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr5_+_38710646_38710935	0.0077565	HNF4A_NR2F1,2.p2	AK045456|Drd5|13492|dopamine receptor D5	NM_013503|Drd5|13492|dopamine receptor D5	BC138059|Drd5|13492|dopamine receptor D5	BC138060|Drd5|13492|dopamine receptor D5	AK032054|Drd5|13492|dopamine receptor D5
mm9_v1_chr2_+_140221224_140221330	0.0076866	HNF4A_NR2F1,2.p2	BC038317|Macrod2|72899|MACRO domain containing 2	BC027552|Macrod2|72899|MACRO domain containing 2	BC028443|Macrod2|72899|MACRO domain containing 2
mm9_v1_chr6_+_83004642_83004658	0.00765755	HNF4A_NR2F1,2.p2	AK154707|Aup1|11993|ancient ubiquitous protein 1	NM_007517|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr1_-_95532227_95532238	0.00764263	HNF4A_NR2F1,2.p2	BC052913|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr10_-_74979949_74979990	0.00712265	HNF4A_NR2F1,2.p2	AK034509|1110038D17Rik|68778|RIKEN cDNA 1110038D17 gene
mm9_v1_chr12_-_88225200_88225353	0.00710469	HNF4A_NR2F1,2.p2	BC057128|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	BC063253|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene
mm9_v1_chr3_-_115417685_115417834	0.0070103	HNF4A_NR2F1,2.p2	BC051023|S1pr1|13609|sphingosine-1-phosphate receptor 1	AK146501|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr17_+_35400983_35401008	0.00675614	HNF4A_NR2F1,2.p2	J00407|H2-D1|14964|histocompatibility 2, D region locus 1
mm9_v1_chr7_-_52870858_52870859	0.0067353	HNF4A_NR2F1,2.p2	BC049592|Fgf21|56636|fibroblast growth factor 21	AK007574|Fgf21|56636|fibroblast growth factor 21	NM_020013|Fgf21|56636|fibroblast growth factor 21
mm9_v1_chrX_+_100609805_100609820	0.00663719	HNF4A_NR2F1,2.p2	BC048493|Tsx|22127|testis specific X-linked gene	NM_009440|Tsx|22127|testis specific X-linked gene	X99796|Tsx|22127|testis specific X-linked gene
mm9_v1_chr3_+_51297898_51297938	0.00659183	HNF4A_NR2F1,2.p2	
mm9_v1_chrX_-_131076136_131076235	0.00640726	HNF4A_NR2F1,2.p2	BC004796|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AF150081|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK088903|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK165573|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AB031055|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	BC094631|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	NM_013898|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK011402|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK090079|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)
mm9_v1_chr12_+_103707401_103707414	0.00632158	HNF4A_NR2F1,2.p2	BC016883|Golga5|27277|golgi autoantigen, golgin subfamily a, 5
mm9_v1_chr17_+_24625943_24625963	0.00616897	HNF4A_NR2F1,2.p2	AK129327|Caskin1|268932|CASK interacting protein 1	BC060720|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr11_-_40508405_40508442	0.00613588	HNF4A_NR2F1,2.p2	AK075600|Mat2b|108645|methionine adenosyltransferase II, beta	AK075947|Mat2b|108645|methionine adenosyltransferase II, beta	AK162087|Mat2b|108645|methionine adenosyltransferase II, beta
mm9_v1_chr11_-_101285982_101286065	0.00602034	HNF4A_NR2F1,2.p2	BC141198|1700113I22Rik|73635|RIKEN cDNA 1700113I22 gene
mm9_v1_chr13_-_32943036_32943057	0.0059897	HNF4A_NR2F1,2.p2	AF426024|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK003930|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK008914|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK076129|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK160167|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	AK004500|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a	NM_025429|Serpinb1a|66222|serine (or cysteine) peptidase inhibitor, clade B, member 1a
mm9_v1_chr11_-_86570918_86571097	0.00573077	HNF4A_NR2F1,2.p2	AK158438|Cltc|67300|clathrin, heavy polypeptide (Hc)	BC079897|Cltc|67300|clathrin, heavy polypeptide (Hc)	NM_001003908|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK171732|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK156869|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr19_+_41557126_41557136	0.00570485	HNF4A_NR2F1,2.p2	AK155007|Lcor|212391|ligand dependent nuclear receptor corepressor	BC099938|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chr7_-_150734696_150734742	0.00565733	HNF4A_NR2F1,2.p2	AK090112|Nap1l4|17955|nucleosome assembly protein 1-like 4
mm9_v1_chr17_+_44914115_44914127	0.00561627	HNF4A_NR2F1,2.p2	AK075916|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	NM_178652|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)
mm9_v1_chr2_-_105229165_105229175	0.00552557	HNF4A_NR2F1,2.p2	AK179954|Rcn1|19672|reticulocalbin 1
mm9_v1_chr15_+_97938874_97939027	0.00551713	HNF4A_NR2F1,2.p2	NM_001163487|Pfkm|18642|phosphofructokinase, muscle	D21867|Pfkm|18642|phosphofructokinase, muscle	AK049773|Pfkm|18642|phosphofructokinase, muscle	AK002711|Pfkm|18642|phosphofructokinase, muscle
mm9_v1_chr10_+_79321979_79322100	0.0055081	HNF4A_NR2F1,2.p2	BC008531|Ptbp1|19205|polypyrimidine tract binding protein 1
mm9_v1_chr13_-_101514515_101514615	0.00548493	HNF4A_NR2F1,2.p2	AK003111|Mrps36|66128|mitochondrial ribosomal protein S36	AK009966|Mrps36|66128|mitochondrial ribosomal protein S36	BC028499|Mrps36|66128|mitochondrial ribosomal protein S36	BC096576|Mrps36|66128|mitochondrial ribosomal protein S36	AK007512|Mrps36|66128|mitochondrial ribosomal protein S36	AK003765|Mrps36|66128|mitochondrial ribosomal protein S36	AK009050|Mrps36|66128|mitochondrial ribosomal protein S36	NM_001190264|Mrps36|66128|mitochondrial ribosomal protein S36	NM_025369|Mrps36|66128|mitochondrial ribosomal protein S36
mm9_v1_chr17_-_71948080_71948114	0.00513386	HNF4A_NR2F1,2.p2	AK032413|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)	AK036113|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)
mm9_v1_chr3_-_30498769_30498835	0.00505217	HNF4A_NR2F1,2.p2	AK007208|Arpm1|76652|actin related protein M1	AK047260|Arpm1|76652|actin related protein M1	NM_029690|Arpm1|76652|actin related protein M1	BC107277|Arpm1|76652|actin related protein M1	BC107278|Arpm1|76652|actin related protein M1
mm9_v1_chr5_-_115750649_115750671	0.00502821	HNF4A_NR2F1,2.p2	BC085492|Dynll1|56455|dynein light chain LC8-type 1
mm9_v1_chr10_-_79209301_79209350	0.00498485	HNF4A_NR2F1,2.p2	BC110697|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK154729|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK053356|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK154181|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK047545|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK085666|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK128956|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	BC117939|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	BC117940|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	AK030039|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)	NM_172551|Polrmt|216151|polymerase (RNA) mitochondrial (DNA directed)
mm9_v1_chr4_-_102887390_102887488	0.00482707	HNF4A_NR2F1,2.p2	AK169775|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK220330|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049462|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK052968|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049180|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	BC115984|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	NM_177732|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm9_v1_chr1_-_174259356_174259436	0.00433972	HNF4A_NR2F1,2.p2	AF130860|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	AK033970|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	NM_008429|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	U11860|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	AK046084|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9	AK015907|Kcnj9|16524|potassium inwardly-rectifying channel, subfamily J, member 9
mm9_v1_chr15_-_99358387_99358595	0.00428637	HNF4A_NR2F1,2.p2	AK158960|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_001038658|Faim2|72393|Fas apoptotic inhibitory molecule 2	NM_028224|Faim2|72393|Fas apoptotic inhibitory molecule 2	BC072560|Faim2|72393|Fas apoptotic inhibitory molecule 2
mm9_v1_chr12_-_55896648_55896721	0.00415283	HNF4A_NR2F1,2.p2	AK011640|Snx6|72183|sorting nexin 6	AK013158|Snx6|72183|sorting nexin 6	NM_026998|Snx6|72183|sorting nexin 6	BC061028|Snx6|72183|sorting nexin 6
mm9_v1_chr16_+_45159173_45159221	0.00413947	HNF4A_NR2F1,2.p2	AB079386|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr7_+_19609771_19609790	0.00401523	HNF4A_NR2F1,2.p2	AK155375|Sympk|68188|symplekin	AK172040|Sympk|68188|symplekin	BC049852|Sympk|68188|symplekin
mm9_v1_chr2_+_4638844_4638934	0.003951	HNF4A_NR2F1,2.p2	AK053896|Bend7|209645|BEN domain containing 7	NM_001190400|Bend7|209645|BEN domain containing 7	NM_178663|Bend7|209645|BEN domain containing 7	AK042822|Bend7|209645|BEN domain containing 7
mm9_v1_chr2_+_181336020_181336108	0.00388088	HNF4A_NR2F1,2.p2	AK145461|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	NM_133701|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK166890|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC025030|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK011639|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	AK081998|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC014869|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)	BC023691|Prpf6|68879|PRP6 pre-mRNA splicing factor 6 homolog (yeast)
mm9_v1_chr7_-_112548498_112548560	0.00373591	HNF4A_NR2F1,2.p2	BC018464|Fam160a2|74349|family with sequence similarity 160, member A2	AK154173|Fam160a2|74349|family with sequence similarity 160, member A2	AK155273|Fam160a2|74349|family with sequence similarity 160, member A2	AK085350|Fam160a2|74349|family with sequence similarity 160, member A2	AK159716|Fam160a2|74349|family with sequence similarity 160, member A2	BC063093|Fam160a2|74349|family with sequence similarity 160, member A2	NM_199009|Fam160a2|74349|family with sequence similarity 160, member A2	AK169996|Fam160a2|74349|family with sequence similarity 160, member A2
mm9_v1_chr2_-_156138199_156138439	0.00371983	HNF4A_NR2F1,2.p2	AK220179|Scand1|19018|SCAN domain-containing 1	BC010724|Scand1|19018|SCAN domain-containing 1	AF220501|Scand1|19018|SCAN domain-containing 1	AF106473|Scand1|19018|SCAN domain-containing 1	AK088253|Scand1|19018|SCAN domain-containing 1	AK009115|Scand1|19018|SCAN domain-containing 1	NM_020255|Scand1|19018|SCAN domain-containing 1
mm9_v1_chr7_-_82454147_82454194	0.00371459	HNF4A_NR2F1,2.p2	BC079568|Sv2b|64176|synaptic vesicle glycoprotein 2 b	NM_153579|Sv2b|64176|synaptic vesicle glycoprotein 2 b
mm9_v1_chr18_-_60907984_60908001	0.00369888	HNF4A_NR2F1,2.p2	AF520867|Ndst1|15531|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm9_v1_chr17_+_34290108_34290343	0.00350164	HNF4A_NR2F1,2.p2	AK032745|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	NM_010387|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	AK169969|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	AK170866|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	BC002237|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	BC003718|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35329|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35330|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35331|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35333|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90964|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90965|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90966|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90967|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90968|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90969|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90970|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90971|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90972|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90973|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90974|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90975|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1
mm9_v1_chr12_+_32008372_32008419	0.00346036	HNF4A_NR2F1,2.p2	AK141833|Lamb1|16777|laminin B1
mm9_v1_chr13_+_113717661_113718000	0.00338307	HNF4A_NR2F1,2.p2	AK087450|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK042497|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK042066|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK162443|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC020331|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC057112|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	AK049530|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC037686|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC082319|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	BC050229|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29	NM_172594|Dhx29|218629|DEAH (Asp-Glu-Ala-His) box polypeptide 29
mm9_v1_chr15_-_75812067_75812212	0.00334239	HNF4A_NR2F1,2.p2	AK205415|2410075B13Rik|223648|RIKEN cDNA 2410075B13 gene
mm9_v1_chr8_-_71664851_71664907	0.00327014	HNF4A_NR2F1,2.p2	AF288601|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC127606|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC127607|Lzts1|211134|leucine zipper, putative tumor suppressor 1	NM_199364|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC139350|Lzts1|211134|leucine zipper, putative tumor suppressor 1	BC139352|Lzts1|211134|leucine zipper, putative tumor suppressor 1
mm9_v1_chr8_+_90796301_90796301	0.00320715	HNF4A_NR2F1,2.p2	NM_007406|Adcy7|11513|adenylate cyclase 7	U12919|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr15_-_82624638_82624663	0.0031457	HNF4A_NR2F1,2.p2	BC023241|Cyp2d26|76279|cytochrome P450, family 2, subfamily d, polypeptide 26
mm9_v1_chr11_-_22760335_22760479	0.00312726	HNF4A_NR2F1,2.p2	BC009075|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	NM_001169114|B3gnt2|53625|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
mm9_v1_chr13_+_46597461_46597559	0.00311829	HNF4A_NR2F1,2.p2	AK049813|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	BC050752|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	AK013331|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	AK033071|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	AK010235|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr3_+_88383528_88383608	0.00291288	HNF4A_NR2F1,2.p2	AK005340|Ssr2|66256|signal sequence receptor, beta	AK010565|Ssr2|66256|signal sequence receptor, beta	AK084530|Ssr2|66256|signal sequence receptor, beta	AK020145|Ssr2|66256|signal sequence receptor, beta	AK012281|Ssr2|66256|signal sequence receptor, beta	AK050505|Ssr2|66256|signal sequence receptor, beta	NM_025448|Ssr2|66256|signal sequence receptor, beta	BC010214|Ssr2|66256|signal sequence receptor, beta
mm9_v1_chr6_-_50546585_50546591	0.00290043	HNF4A_NR2F1,2.p2	AK161510|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	AK014840|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	NM_027564|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	BC055110|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene
mm9_v1_chr16_+_4937622_4937664	0.00287699	HNF4A_NR2F1,2.p2	AK189949|Mgrn1|17237|mahogunin, ring finger 1	AK194956|Mgrn1|17237|mahogunin, ring finger 1	AK218167|Mgrn1|17237|mahogunin, ring finger 1
mm9_v1_chr14_-_14949338_14949426	0.0028756	HNF4A_NR2F1,2.p2	AK217031|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
mm9_v1_chr11_+_101177524_101177765	0.00278022	HNF4A_NR2F1,2.p2	AK140597|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK150939|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK171348|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	NM_011192|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC015255|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK156079|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC139818|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	D87911|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK178475|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK179381|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK180194|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	CT010198|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	U60330|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3
mm9_v1_chr19_+_56623108_56623165	0.00259855	HNF4A_NR2F1,2.p2	AK004564|Nhlrc2|66866|NHL repeat containing 2	AK002650|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr2_+_162843196_162843279	0.00256951	HNF4A_NR2F1,2.p2	AK160745|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK088467|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	NM_172150|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	AK144188|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)	BC037708|Ift52|245866|intraflagellar transport 52 homolog (Chlamydomonas)
mm9_v1_chr16_-_17531116_17531168	0.00250475	HNF4A_NR2F1,2.p2	BC018221|Thap7|69009|THAP domain containing 7	NM_026909|Thap7|69009|THAP domain containing 7
mm9_v1_chr19_+_47314809_47314814	0.00240142	HNF4A_NR2F1,2.p2	AK078529|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr19_+_5088593_5088613	0.00236047	HNF4A_NR2F1,2.p2	BC011117|Yif1a|68090|Yip1 interacting factor homolog A (S. cerevisiae)
mm9_v1_chr7_-_50745358_50745392	0.00229248	HNF4A_NR2F1,2.p2	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr10_-_80170504_80170531	0.00218178	HNF4A_NR2F1,2.p2	AK205331|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chr17_+_71965554_71965636	0.00216342	HNF4A_NR2F1,2.p2	NM_175639|Wdr43|72515|WD repeat domain 43	AK012043|Wdr43|72515|WD repeat domain 43	AK152321|Wdr43|72515|WD repeat domain 43	AK032907|Wdr43|72515|WD repeat domain 43	AK080660|Wdr43|72515|WD repeat domain 43	AK129031|Wdr43|72515|WD repeat domain 43
mm9_v1_chr11_+_66838648_66838688	0.0021121	HNF4A_NR2F1,2.p2	AK043094|Tmem220|338369|transmembrane protein 220	BC110628|Tmem220|338369|transmembrane protein 220	BC110629|Tmem220|338369|transmembrane protein 220	NM_177392|Tmem220|338369|transmembrane protein 220	AK078505|Tmem220|338369|transmembrane protein 220
mm9_v1_chr15_+_81065928_81066000	0.00182178	HNF4A_NR2F1,2.p2	NM_145132|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr15_+_101904203_101904238	0.00179305	HNF4A_NR2F1,2.p2	NM_145625|Eif4b|75705|eukaryotic translation initiation factor 4B
mm9_v1_chr4_+_116924633_116924654	0.00161668	HNF4A_NR2F1,2.p2	BC019937|Tmem53|68777|transmembrane protein 53	BC020121|Tmem53|68777|transmembrane protein 53	AK005104|Tmem53|68777|transmembrane protein 53
mm9_v1_chr11_+_78002249_78002305	0.0015689	HNF4A_NR2F1,2.p2	NM_033475|Rab34|19376|RAB34, member of RAS oncogene family	BC028481|Rab34|19376|RAB34, member of RAS oncogene family	AK160308|Rab34|19376|RAB34, member of RAS oncogene family
mm9_v1_chr6_-_66987377_66987402	0.00150595	HNF4A_NR2F1,2.p2	BC011141|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	AK144900|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	L28177|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha	NM_007836|Gadd45a|13197|growth arrest and DNA-damage-inducible 45 alpha
mm9_v1_chr6_-_86683191_86683319	0.0014649	HNF4A_NR2F1,2.p2	AF186095|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK132788|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AF282322|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AF163665|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)
mm9_v1_chr10_-_88193845_88193845	0.00142938	HNF4A_NR2F1,2.p2	NM_001037166|Gm4925|237433|predicted gene 4925
mm9_v1_chr11_-_100259048_100259060	0.00134991	HNF4A_NR2F1,2.p2	BC040757|Jup|16480|junction plakoglobin	NM_010593|Jup|16480|junction plakoglobin	BC094461|Jup|16480|junction plakoglobin
mm9_v1_chr10_+_59809734_59809769	0.00119827	HNF4A_NR2F1,2.p2	EF426799|4632428N05Rik|74048|RIKEN cDNA 4632428N05 gene
mm9_v1_chr19_-_47911850_47911871	0.00114716	HNF4A_NR2F1,2.p2	AK015497|Wdr96|70806|WD repeat domain 96	NM_027559|Wdr96|70806|WD repeat domain 96	AK015217|Wdr96|70806|WD repeat domain 96
mm9_v1_chr10_+_80643263_80643395	0.000990227	HNF4A_NR2F1,2.p2	AK189998|Eef2|13629|eukaryotic translation elongation factor 2	AK190198|Eef2|13629|eukaryotic translation elongation factor 2	AK190350|Eef2|13629|eukaryotic translation elongation factor 2	AK190868|Eef2|13629|eukaryotic translation elongation factor 2	AK191552|Eef2|13629|eukaryotic translation elongation factor 2	AK191881|Eef2|13629|eukaryotic translation elongation factor 2	AK192244|Eef2|13629|eukaryotic translation elongation factor 2	AK192889|Eef2|13629|eukaryotic translation elongation factor 2	AK192915|Eef2|13629|eukaryotic translation elongation factor 2	AK193101|Eef2|13629|eukaryotic translation elongation factor 2	AK193468|Eef2|13629|eukaryotic translation elongation factor 2	AK193703|Eef2|13629|eukaryotic translation elongation factor 2	AK193872|Eef2|13629|eukaryotic translation elongation factor 2	AK194719|Eef2|13629|eukaryotic translation elongation factor 2	AK195368|Eef2|13629|eukaryotic translation elongation factor 2	AK195633|Eef2|13629|eukaryotic translation elongation factor 2	AK195893|Eef2|13629|eukaryotic translation elongation factor 2	AK196946|Eef2|13629|eukaryotic translation elongation factor 2	AK197219|Eef2|13629|eukaryotic translation elongation factor 2	AK197725|Eef2|13629|eukaryotic translation elongation factor 2	AK198008|Eef2|13629|eukaryotic translation elongation factor 2	AK198317|Eef2|13629|eukaryotic translation elongation factor 2	AK198429|Eef2|13629|eukaryotic translation elongation factor 2	AK199118|Eef2|13629|eukaryotic translation elongation factor 2	AK200031|Eef2|13629|eukaryotic translation elongation factor 2	AK200070|Eef2|13629|eukaryotic translation elongation factor 2	AK200383|Eef2|13629|eukaryotic translation elongation factor 2	AK201054|Eef2|13629|eukaryotic translation elongation factor 2	AK201169|Eef2|13629|eukaryotic translation elongation factor 2	AK201226|Eef2|13629|eukaryotic translation elongation factor 2	AK201313|Eef2|13629|eukaryotic translation elongation factor 2	AK201376|Eef2|13629|eukaryotic translation elongation factor 2	AK202006|Eef2|13629|eukaryotic translation elongation factor 2	AK202706|Eef2|13629|eukaryotic translation elongation factor 2	AK202834|Eef2|13629|eukaryotic translation elongation factor 2	AK203709|Eef2|13629|eukaryotic translation elongation factor 2	AK203838|Eef2|13629|eukaryotic translation elongation factor 2	AK204069|Eef2|13629|eukaryotic translation elongation factor 2	AK204359|Eef2|13629|eukaryotic translation elongation factor 2	AK204850|Eef2|13629|eukaryotic translation elongation factor 2	AK207898|Eef2|13629|eukaryotic translation elongation factor 2	AK215864|Eef2|13629|eukaryotic translation elongation factor 2	AK215877|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr3_-_115417847_115417876	0.000967759	HNF4A_NR2F1,2.p2	BC049094|S1pr1|13609|sphingosine-1-phosphate receptor 1	AK138316|S1pr1|13609|sphingosine-1-phosphate receptor 1
mm9_v1_chr13_+_46597271_46597443	0.000765395	HNF4A_NR2F1,2.p2	AK035556|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	NM_026056|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr7_+_97591618_97591648	0.000709298	HNF4A_NR2F1,2.p2	AF408398|Crebzf|233490|CREB/ATF bZIP transcription factor
mm9_v1_chr15_+_58765328_58765389	0.000645078	HNF4A_NR2F1,2.p2	AK002254|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	AK003540|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	AK004522|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	NM_023172|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	BC031539|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm9_v1_chr5_-_73647814_73647839	0.000643109	HNF4A_NR2F1,2.p2	AK171992|Fryl|72313|furry homolog-like (Drosophila)
mm9_v1_chr8_-_122086343_122086607	0.000599713	HNF4A_NR2F1,2.p2	BC037193|Hsdl1|72552|hydroxysteroid dehydrogenase like 1	BC038480|Hsdl1|72552|hydroxysteroid dehydrogenase like 1	BC058121|Hsdl1|72552|hydroxysteroid dehydrogenase like 1
mm9_v1_chr15_-_79158357_79158407	0.000272686	HNF4A_NR2F1,2.p2	BC057209|Pla2g6|53357|phospholipase A2, group VI	AK183678|Pla2g6|53357|phospholipase A2, group VI
mm9_v1_chr10_+_82323085_82323203	0.000262293	HNF4A_NR2F1,2.p2	NM_001042514|Txnrd1|50493|thioredoxin reductase 1
