mm9_v1_chr8_-_3625251_3625286	5.30581	NANOG.p2	M21532|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_008790|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr10_-_24919916_24919967	4.88557	NANOG.p2	AK086696|Akap7|432442|A kinase (PRKA) anchor protein 7	AK085630|Akap7|432442|A kinase (PRKA) anchor protein 7	AK139238|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr1_+_6720153_6720223	3.57864	NANOG.p2	AK133743|St18|240690|suppression of tumorigenicity 18	BC118528|St18|240690|suppression of tumorigenicity 18	AK137440|St18|240690|suppression of tumorigenicity 18	AK141513|St18|240690|suppression of tumorigenicity 18
mm9_v1_chrX_+_133357268_133357438	2.94803	NANOG.p2	AK160872|Plp1|18823|proteolipid protein (myelin) 1	AK134554|Plp1|18823|proteolipid protein (myelin) 1	M15442|Plp1|18823|proteolipid protein (myelin) 1	AK077564|Plp1|18823|proteolipid protein (myelin) 1	BC027010|Plp1|18823|proteolipid protein (myelin) 1	NM_011123|Plp1|18823|proteolipid protein (myelin) 1	AK192772|Plp1|18823|proteolipid protein (myelin) 1	AK203421|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr10_+_96942263_96942299	2.94564	NANOG.p2	AK052759|Dcn|13179|decorin	AK035609|Dcn|13179|decorin
mm9_v1_chr17_+_80706746_80706746	2.44532	NANOG.p2	NM_001145452|Arhgef33|381112|Rho guanine nucleotide exchange factor (GEF) 33
mm9_v1_chr5_+_27588462_27588514	2.37537	NANOG.p2	NM_001136060|Dpp6|13483|dipeptidylpeptidase 6	AK031903|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr7_-_20284370_20284493	2.08092	NANOG.p2	BC083351|Apoe|11816|apolipoprotein E	BC044785|Apoe|11816|apolipoprotein E	AK149568|Apoe|11816|apolipoprotein E	BC028816|Apoe|11816|apolipoprotein E	AK010261|Apoe|11816|apolipoprotein E	AK075843|Apoe|11816|apolipoprotein E	AK131624|Apoe|11816|apolipoprotein E	AK134921|Apoe|11816|apolipoprotein E	AK148747|Apoe|11816|apolipoprotein E	AK149111|Apoe|11816|apolipoprotein E	AK159105|Apoe|11816|apolipoprotein E	AK159517|Apoe|11816|apolipoprotein E	AK150834|Apoe|11816|apolipoprotein E	AK159424|Apoe|11816|apolipoprotein E
mm9_v1_chr2_-_127346987_127347085	1.97204	NANOG.p2	AF274050|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	DQ148499|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF300870|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC057329|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC026980|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC047139|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AK165711|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF184624|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr10_+_73284612_73284690	1.81315	NANOG.p2	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chr6_+_125502979_125502996	1.74453	NANOG.p2	AK044921|Vwf|22371|Von Willebrand factor homolog	AK083237|Vwf|22371|Von Willebrand factor homolog	AK164450|Vwf|22371|Von Willebrand factor homolog	DQ355287|Vwf|22371|Von Willebrand factor homolog	DQ355288|Vwf|22371|Von Willebrand factor homolog	NM_011708|Vwf|22371|Von Willebrand factor homolog
mm9_v1_chr2_+_125860377_125860409	1.74052	NANOG.p2	AK037172|Fgf7|14178|fibroblast growth factor 7	NM_008008|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chr18_+_23573908_23573935	1.60492	NANOG.p2	NM_010087|Dtna|13527|dystrobrevin alpha	NM_207650|Dtna|13527|dystrobrevin alpha
mm9_v1_chr8_-_87297283_87297318	1.58939	NANOG.p2	BC090626|Nfix|18032|nuclear factor I/X
mm9_v1_chr8_-_3624988_3625048	1.56388	NANOG.p2	AK003002|Pcp2|18545|Purkinje cell protein 2 (L7)	AK160398|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129804|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr15_+_3220994_3220998	1.52479	NANOG.p2	AK002450|Sepp1|20363|selenoprotein P, plasma, 1	AK077265|Sepp1|20363|selenoprotein P, plasma, 1	AK146774|Sepp1|20363|selenoprotein P, plasma, 1	AK148623|Sepp1|20363|selenoprotein P, plasma, 1	AK159269|Sepp1|20363|selenoprotein P, plasma, 1	AK159524|Sepp1|20363|selenoprotein P, plasma, 1	AK159911|Sepp1|20363|selenoprotein P, plasma, 1	AK159935|Sepp1|20363|selenoprotein P, plasma, 1	AK167611|Sepp1|20363|selenoprotein P, plasma, 1	AK168631|Sepp1|20363|selenoprotein P, plasma, 1	AK168747|Sepp1|20363|selenoprotein P, plasma, 1	AK168926|Sepp1|20363|selenoprotein P, plasma, 1	AK169011|Sepp1|20363|selenoprotein P, plasma, 1	AK169158|Sepp1|20363|selenoprotein P, plasma, 1	AK169362|Sepp1|20363|selenoprotein P, plasma, 1	AK159894|Sepp1|20363|selenoprotein P, plasma, 1	AK168583|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chrM_+_3913_4410	1.51209	NANOG.p2	
mm9_v1_chr1_+_106665395_106665416	1.42667	NANOG.p2	AK034475|Cdh20|23836|cadherin 20	NM_011800|Cdh20|23836|cadherin 20	BC119606|Cdh20|23836|cadherin 20	BC119607|Cdh20|23836|cadherin 20
mm9_v1_chr3_+_68376289_68376313	1.39799	NANOG.p2	NM_013928|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chrM_+_12383_12506	1.26156	NANOG.p2	
mm9_v1_chr4_+_119486921_119486941	1.24214	NANOG.p2	AK035881|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr15_+_3220999_3221005	1.16937	NANOG.p2	AK168463|Sepp1|20363|selenoprotein P, plasma, 1	BC001991|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr7_+_86418127_86418181	1.12062	NANOG.p2	AK008690|Abhd2|54608|abhydrolase domain containing 2	AK053460|Abhd2|54608|abhydrolase domain containing 2	AK139526|Abhd2|54608|abhydrolase domain containing 2	NM_018811|Abhd2|54608|abhydrolase domain containing 2	AF546701|Abhd2|54608|abhydrolase domain containing 2	BC089477|Abhd2|54608|abhydrolase domain containing 2	AF201730|Abhd2|54608|abhydrolase domain containing 2	BC027098|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr2_+_70312979_70313222	1.0744	NANOG.p2	AK036234|Sp5|64406|trans-acting transcription factor 5	NM_022435|Sp5|64406|trans-acting transcription factor 5	BC116691|Sp5|64406|trans-acting transcription factor 5	BC117505|Sp5|64406|trans-acting transcription factor 5	AF279479|Sp5|64406|trans-acting transcription factor 5
mm9_v1_chrM_+_13998_14016	1.04436	NANOG.p2	
mm9_v1_chr7_+_86418082_86418112	1.02349	NANOG.p2	AK153642|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr12_+_110783593_110783620	1.01235	NANOG.p2	AK018105|Meg3|17263|maternally expressed 3	AK140201|Meg3|17263|maternally expressed 3
mm9_v1_chr9_+_45178521_45178551	0.976197	NANOG.p2	BC042579|Fxyd6|59095|FXYD domain-containing ion transport regulator 6	AK042808|Fxyd6|59095|FXYD domain-containing ion transport regulator 6	AK018354|Fxyd6|59095|FXYD domain-containing ion transport regulator 6	AB032010|Fxyd6|59095|FXYD domain-containing ion transport regulator 6
mm9_v1_chr6_-_53770406_53770488	0.967651	NANOG.p2	AK122338|Tril|66873|TLR4 interactor with leucine-rich repeats	AK033401|Tril|66873|TLR4 interactor with leucine-rich repeats	AK004681|Tril|66873|TLR4 interactor with leucine-rich repeats
mm9_v1_chr14_+_122879276_122879283	0.949904	NANOG.p2	AK158319|Zic2|22772|zinc finger protein of the cerebellum 2
mm9_v1_chr6_+_88674697_88674748	0.948032	NANOG.p2	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr1_+_6720087_6720131	0.946017	NANOG.p2	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr15_+_39491073_39491119	0.931204	NANOG.p2	AK054553|Rims2|116838|regulating synaptic membrane exocytosis 2	AK032619|Rims2|116838|regulating synaptic membrane exocytosis 2
mm9_v1_chr10_+_96942181_96942256	0.923531	NANOG.p2	X53929|Dcn|13179|decorin	AK135287|Dcn|13179|decorin	AK145905|Dcn|13179|decorin	AK161788|Dcn|13179|decorin	AK165408|Dcn|13179|decorin
mm9_v1_chr14_-_104215770_104216122	0.923437	NANOG.p2	AK202768|Ednrb|13618|endothelin receptor type B	AK191663|Ednrb|13618|endothelin receptor type B	AK203096|Ednrb|13618|endothelin receptor type B	AK215811|Ednrb|13618|endothelin receptor type B
mm9_v1_chr7_+_134094045_134094242	0.912792	NANOG.p2	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr13_+_20564928_20564972	0.904638	NANOG.p2	AK053306|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	AK032085|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	BC024727|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	NM_198093|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)
mm9_v1_chr9_+_118387306_118387461	0.883958	NANOG.p2	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr18_-_32109233_32109289	0.866124	NANOG.p2	BC070439|Gpr17|574402|G protein-coupled receptor 17	NM_001025381|Gpr17|574402|G protein-coupled receptor 17
mm9_v1_chr10_-_27336648_27336835	0.858276	NANOG.p2	U12147|Lama2|16773|laminin, alpha 2	AK046114|Lama2|16773|laminin, alpha 2	AK080131|Lama2|16773|laminin, alpha 2	AK030879|Lama2|16773|laminin, alpha 2	NM_008481|Lama2|16773|laminin, alpha 2	AK042011|Lama2|16773|laminin, alpha 2
mm9_v1_chr9_+_75623153_75623180	0.815524	NANOG.p2	AK033362|Bmp5|12160|bone morphogenetic protein 5	NM_007555|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr12_+_110783786_110783839	0.813827	NANOG.p2	BC048191|Meg3|17263|maternally expressed 3
mm9_v1_chrM_+_13320_13486	0.80738	NANOG.p2	
mm9_v1_chr19_-_34329804_34329828	0.806119	NANOG.p2	X13297|Acta2|11475|actin, alpha 2, smooth muscle, aorta	BC064800|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK017374|Acta2|11475|actin, alpha 2, smooth muscle, aorta	AK156331|Acta2|11475|actin, alpha 2, smooth muscle, aorta	NM_007392|Acta2|11475|actin, alpha 2, smooth muscle, aorta
mm9_v1_chr1_-_79436564_79436664	0.792505	NANOG.p2	BC048249|Scg2|20254|secretogranin II	BC014717|Scg2|20254|secretogranin II	NM_009129|Scg2|20254|secretogranin II
mm9_v1_chr9_-_29770699_29770842	0.789722	NANOG.p2	AK138263|Ntm|235106|neurotrimin	AK045973|Ntm|235106|neurotrimin	AK046377|Ntm|235106|neurotrimin	NM_172290|Ntm|235106|neurotrimin	AK042854|Ntm|235106|neurotrimin	AK140516|Ntm|235106|neurotrimin	AK020998|Ntm|235106|neurotrimin	AK020745|Ntm|235106|neurotrimin
mm9_v1_chr1_-_165243777_165243829	0.772419	NANOG.p2	NM_001025570|Prrx1|18933|paired related homeobox 1	NM_011127|Prrx1|18933|paired related homeobox 1	NM_175686|Prrx1|18933|paired related homeobox 1	U03873|Prrx1|18933|paired related homeobox 1	AK084387|Prrx1|18933|paired related homeobox 1	AK029347|Prrx1|18933|paired related homeobox 1
mm9_v1_chr11_-_33103458_33103587	0.762859	NANOG.p2	AJ223801|Tlx3|27140|T-cell leukemia, homeobox 3	BC141308|Tlx3|27140|T-cell leukemia, homeobox 3	BC145631|Tlx3|27140|T-cell leukemia, homeobox 3	AK141870|Tlx3|27140|T-cell leukemia, homeobox 3	NM_019916|Tlx3|27140|T-cell leukemia, homeobox 3
mm9_v1_chr15_+_78757148_78757164	0.749637	NANOG.p2	NM_008495|Lgals1|16852|lectin, galactose binding, soluble 1	X66532|Lgals1|16852|lectin, galactose binding, soluble 1	AK004298|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr2_-_147011990_147012137	0.7352	NANOG.p2	AK043561|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138159|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	BC138160|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	U31566|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	AK141002|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_001077632|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)	NM_010919|Nkx2-2|18088|NK2 transcription factor related, locus 2 (Drosophila)
mm9_v1_chr2_-_127347102_127347108	0.723738	NANOG.p2	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr1_+_155756310_155756313	0.712692	NANOG.p2	AK146463|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK158643|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159888|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK152497|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr6_+_125502943_125502970	0.710748	NANOG.p2	AK157296|Vwf|22371|Von Willebrand factor homolog
mm9_v1_chr8_+_24780132_24780145	0.705764	NANOG.p2	AK140391|Zmat4|320158|zinc finger, matrin type 4	AK140413|Zmat4|320158|zinc finger, matrin type 4	NM_177086|Zmat4|320158|zinc finger, matrin type 4	AK036254|Zmat4|320158|zinc finger, matrin type 4	AK134793|Zmat4|320158|zinc finger, matrin type 4	BC065110|Zmat4|320158|zinc finger, matrin type 4	BC079657|Zmat4|320158|zinc finger, matrin type 4
mm9_v1_chr1_-_166368439_166368560	0.704122	NANOG.p2	EF437334|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr15_-_42508294_42508522	0.670672	NANOG.p2	U83509|Angpt1|11600|angiopoietin 1	BC067410|Angpt1|11600|angiopoietin 1	NM_009640|Angpt1|11600|angiopoietin 1	AK172868|Angpt1|11600|angiopoietin 1	AK012027|Angpt1|11600|angiopoietin 1	AK088439|Angpt1|11600|angiopoietin 1
mm9_v1_chr11_+_29618696_29618843	0.665708	NANOG.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr12_+_110798661_110798666	0.665341	NANOG.p2	AK019916|Meg3|17263|maternally expressed 3
mm9_v1_chr3_-_108236057_108236062	0.655728	NANOG.p2	AK181805|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK190309|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK217331|Sars|20226|seryl-aminoacyl-tRNA synthetase	AK219731|Sars|20226|seryl-aminoacyl-tRNA synthetase
mm9_v1_chr10_+_57351786_57351901	0.655365	NANOG.p2	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr11_+_93905443_93905464	0.653402	NANOG.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr10_+_98725871_98725972	0.64906	NANOG.p2	AK009131|Dusp6|67603|dual specificity phosphatase 6	AK159146|Dusp6|67603|dual specificity phosphatase 6	AK159900|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr1_-_165243608_165243611	0.648927	NANOG.p2	AK089006|Prrx1|18933|paired related homeobox 1
mm9_v1_chr1_+_111880313_111880391	0.647402	NANOG.p2	AK034096|Cdh7|241201|cadherin 7, type 2	NM_172853|Cdh7|241201|cadherin 7, type 2	AK137369|Cdh7|241201|cadherin 7, type 2
mm9_v1_chr16_-_85550617_85550674	0.641862	NANOG.p2	BC099957|Cyyr1|224405|cysteine and tyrosine-rich protein 1	NM_144853|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK031840|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AY061854|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK171936|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK163137|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK158088|Cyyr1|224405|cysteine and tyrosine-rich protein 1
mm9_v1_chr2_-_79296732_79296799	0.63148	NANOG.p2	BC094611|Neurod1|18012|neurogenic differentiation 1	BC018241|Neurod1|18012|neurogenic differentiation 1	AK018781|Neurod1|18012|neurogenic differentiation 1	AK005073|Neurod1|18012|neurogenic differentiation 1	NM_010894|Neurod1|18012|neurogenic differentiation 1	AK028055|Neurod1|18012|neurogenic differentiation 1
mm9_v1_chr10_-_101953046_101953066	0.630778	NANOG.p2	AF304160|Nts|67405|neurotensin	BC043024|Nts|67405|neurotensin	NM_024435|Nts|67405|neurotensin	AK017202|Nts|67405|neurotensin	AK017212|Nts|67405|neurotensin
mm9_v1_chr3_+_89324085_89324085	0.625192	NANOG.p2	AK137738|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	AK170218|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	NM_080466|Kcnn3|140493|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
mm9_v1_chr18_+_42713035_42713061	0.618113	NANOG.p2	AK165067|Tcerg1|56070|transcription elongation regulator 1 (CA150)
mm9_v1_chr11_+_3230733_3230843	0.609757	NANOG.p2	NM_178149|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK028419|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK029304|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK154842|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK005141|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AK160300|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528081|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC055920|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC079641|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	AF528078|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1	BC028479|Pik3ip1|216505|phosphoinositide-3-kinase interacting protein 1
mm9_v1_chr2_+_164595447_164595456	0.603974	NANOG.p2	BC147032|Ube2c|68612|ubiquitin-conjugating enzyme E2C	BC147033|Ube2c|68612|ubiquitin-conjugating enzyme E2C	BC171983|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr3_-_88214230_88214284	0.598039	NANOG.p2	BC037139|Pmf1|67037|polyamine-modulated factor 1	BC049223|Pmf1|67037|polyamine-modulated factor 1	AK011174|Pmf1|67037|polyamine-modulated factor 1	AK012113|Pmf1|67037|polyamine-modulated factor 1	AK168200|Pmf1|67037|polyamine-modulated factor 1	NM_025928|Pmf1|67037|polyamine-modulated factor 1	AK013787|Pmf1|67037|polyamine-modulated factor 1	AF348509|Pmf1|67037|polyamine-modulated factor 1	AF348510|Pmf1|67037|polyamine-modulated factor 1	AK150603|Pmf1|67037|polyamine-modulated factor 1	AK078308|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr11_+_94871643_94871672	0.587684	NANOG.p2	AK044765|Samd14|217125|sterile alpha motif domain containing 14	BC034054|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr18_+_57628139_57628180	0.58318	NANOG.p2	NM_001134697|Ctxn3|629147|cortexin 3	AK042789|Ctxn3|629147|cortexin 3
mm9_v1_chr6_+_134874663_134874674	0.57894	NANOG.p2	AK154276|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B	AK169586|Cdkn1b|12576|cyclin-dependent kinase inhibitor 1B
mm9_v1_chr8_+_4238862_4238907	0.575603	NANOG.p2	AB005654|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK028772|Map2k7|26400|mitogen-activated protein kinase kinase 7	U74463|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chrX_-_85360961_85361026	0.572672	NANOG.p2	BC119580|Il1rapl1|331461|interleukin 1 receptor accessory protein-like 1	NM_001160403|Il1rapl1|331461|interleukin 1 receptor accessory protein-like 1	AK081272|Il1rapl1|331461|interleukin 1 receptor accessory protein-like 1
mm9_v1_chr9_+_56712850_56712966	0.561503	NANOG.p2	NM_139001|Cspg4|121021|chondroitin sulfate proteoglycan 4	AF352400|Cspg4|121021|chondroitin sulfate proteoglycan 4
mm9_v1_chr16_-_37385024_37385045	0.556179	NANOG.p2	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chr2_+_10075242_10075276	0.553359	NANOG.p2	AK087428|Itih5|209378|inter-alpha (globulin) inhibitor H5	AK134707|Itih5|209378|inter-alpha (globulin) inhibitor H5	AK077381|Itih5|209378|inter-alpha (globulin) inhibitor H5
mm9_v1_chr19_-_7044198_7044291	0.54522	NANOG.p2	U43144|Plcb3|18797|phospholipase C, beta 3	AK164300|Plcb3|18797|phospholipase C, beta 3	BC035928|Plcb3|18797|phospholipase C, beta 3	NM_008874|Plcb3|18797|phospholipase C, beta 3	AK159679|Plcb3|18797|phospholipase C, beta 3	AK220180|Plcb3|18797|phospholipase C, beta 3	AK146793|Plcb3|18797|phospholipase C, beta 3
mm9_v1_chr11_-_69479553_69479654	0.54148	NANOG.p2	NM_009853|Cd68|12514|CD68 antigen	AK170443|Cd68|12514|CD68 antigen	BC021637|Cd68|12514|CD68 antigen	AK002264|Cd68|12514|CD68 antigen	X68273|Cd68|12514|CD68 antigen
mm9_v1_chr19_-_55177562_55177604	0.538997	NANOG.p2	AK047295|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	AK173202|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr8_+_122190264_122190448	0.534099	NANOG.p2	AK009971|Wfdc1|67866|WAP four-disulfide core domain 1	AK132541|Wfdc1|67866|WAP four-disulfide core domain 1	NM_023395|Wfdc1|67866|WAP four-disulfide core domain 1	BC132073|Wfdc1|67866|WAP four-disulfide core domain 1	BC132469|Wfdc1|67866|WAP four-disulfide core domain 1	BC145305|Wfdc1|67866|WAP four-disulfide core domain 1	AK142707|Wfdc1|67866|WAP four-disulfide core domain 1	AK161606|Wfdc1|67866|WAP four-disulfide core domain 1	AK018575|Wfdc1|67866|WAP four-disulfide core domain 1	BC038122|Wfdc1|67866|WAP four-disulfide core domain 1	BC025850|Wfdc1|67866|WAP four-disulfide core domain 1
mm9_v1_chr2_-_6642489_6642726	0.531322	NANOG.p2	AK137555|Celf2|14007|CUGBP, Elav-like family member 2	AK151818|Celf2|14007|CUGBP, Elav-like family member 2	AK152628|Celf2|14007|CUGBP, Elav-like family member 2	AK153267|Celf2|14007|CUGBP, Elav-like family member 2	AK162651|Celf2|14007|CUGBP, Elav-like family member 2	AK172648|Celf2|14007|CUGBP, Elav-like family member 2	AK169542|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr18_-_72367655_72367683	0.528558	NANOG.p2	
mm9_v1_chr2_+_84574217_84574360	0.525751	NANOG.p2	AB098743|Ypel4|241525|yippee-like 4 (Drosophila)	NM_001005342|Ypel4|241525|yippee-like 4 (Drosophila)
mm9_v1_chrX_-_73120447_73120456	0.523938	NANOG.p2	AK160501|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr3_-_50247306_50247534	0.522535	NANOG.p2	AK162233|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK170568|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141402|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	BC141408|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AB022345|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766236|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AY766237|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK165599|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089202|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037742|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK076322|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK163168|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171252|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171327|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK089283|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK171192|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	AK037490|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	NM_011990|Slc7a11|26570|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm9_v1_chr13_-_53568111_53568148	0.513159	NANOG.p2	AK131974|Msx2|17702|homeobox, msh-like 2	BC141132|Msx2|17702|homeobox, msh-like 2	AK133846|Msx2|17702|homeobox, msh-like 2	NM_013601|Msx2|17702|homeobox, msh-like 2
mm9_v1_chr5_+_23870625_23870649	0.508662	NANOG.p2	AK158106|Nos3|18127|nitric oxide synthase 3, endothelial cell	AK077896|Nos3|18127|nitric oxide synthase 3, endothelial cell	NM_008713|Nos3|18127|nitric oxide synthase 3, endothelial cell	U53142|Nos3|18127|nitric oxide synthase 3, endothelial cell	BC052636|Nos3|18127|nitric oxide synthase 3, endothelial cell
mm9_v1_chr17_+_70871444_70871503	0.491919	NANOG.p2	NM_001128180|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK161941|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK163689|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr11_-_33893151_33893192	0.491266	NANOG.p2	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr7_-_86531587_86531645	0.490171	NANOG.p2	BC016268|Rlbp1|19771|retinaldehyde binding protein 1	AK014227|Rlbp1|19771|retinaldehyde binding protein 1
mm9_v1_chr1_-_195068455_195068557	0.489103	NANOG.p2	DQ089001|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	S75207|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	AK149518|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	AK165212|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1	NM_001044751|Hsd11b1|15483|hydroxysteroid 11-beta dehydrogenase 1
mm9_v1_chr10_+_97028409_97028443	0.487721	NANOG.p2	AK075737|Lum|17022|lumican	AK085240|Lum|17022|lumican	AK164774|Lum|17022|lumican
mm9_v1_chrX_-_73120485_73120524	0.475654	NANOG.p2	AK165540|Pls3|102866|plastin 3 (T-isoform)	NM_001166453|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr15_+_78860623_78860757	0.461005	NANOG.p2	
mm9_v1_chr19_+_8692485_8692668	0.452682	NANOG.p2	NM_008766|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	BC021647|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	U52842|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6	AK035971|Slc22a6|18399|solute carrier family 22 (organic anion transporter), member 6
mm9_v1_chrM_+_3844_3864	0.452412	NANOG.p2	
mm9_v1_chr9_+_14305055_14305063	0.434347	NANOG.p2	NM_023153|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr3_+_54165028_54165059	0.432247	NANOG.p2	NM_001198765|Postn|50706|periostin, osteoblast specific factor	NM_001198766|Postn|50706|periostin, osteoblast specific factor	NM_015784|Postn|50706|periostin, osteoblast specific factor	AK030756|Postn|50706|periostin, osteoblast specific factor	AK154049|Postn|50706|periostin, osteoblast specific factor	D13664|Postn|50706|periostin, osteoblast specific factor	BC007141|Postn|50706|periostin, osteoblast specific factor	AY651928|Postn|50706|periostin, osteoblast specific factor	BC031449|Postn|50706|periostin, osteoblast specific factor
mm9_v1_chr5_-_135223110_135223192	0.429463	NANOG.p2	U08210|Eln|13717|elastin	BC051074|Eln|13717|elastin	AK086777|Eln|13717|elastin	AK041860|Eln|13717|elastin	NM_007925|Eln|13717|elastin	AK080277|Eln|13717|elastin	BC051649|Eln|13717|elastin
mm9_v1_chr11_-_94902584_94902717	0.428464	NANOG.p2	AF267660|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK002647|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	BC021764|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	NM_133667|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2
mm9_v1_chr2_+_84976516_84976632	0.426668	NANOG.p2	AK133580|Aplnr|23796|apelin receptor	NM_011784|Aplnr|23796|apelin receptor	BC039224|Aplnr|23796|apelin receptor	AK157582|Aplnr|23796|apelin receptor	AK087138|Aplnr|23796|apelin receptor	AK075706|Aplnr|23796|apelin receptor	AK052383|Aplnr|23796|apelin receptor	AK078374|Aplnr|23796|apelin receptor
mm9_v1_chr6_+_83129579_83129623	0.419705	NANOG.p2	AK162846|Dctn1|13191|dynactin 1	AK157867|Dctn1|13191|dynactin 1	NM_007835|Dctn1|13191|dynactin 1
mm9_v1_chr5_-_63157309_63157425	0.417751	NANOG.p2	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr7_+_97535490_97535508	0.416186	NANOG.p2	AK051653|Sytl2|83671|synaptotagmin-like 2	NM_001040087|Sytl2|83671|synaptotagmin-like 2	NM_001040088|Sytl2|83671|synaptotagmin-like 2	AK162921|Sytl2|83671|synaptotagmin-like 2	AK027924|Sytl2|83671|synaptotagmin-like 2
mm9_v1_chr6_-_136890189_136890259	0.416184	NANOG.p2	BC031763|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	L07918|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK169733|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	AK002516|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta	NM_007486|Arhgdib|11857|Rho, GDP dissociation inhibitor (GDI) beta
mm9_v1_chr17_+_34176412_34176421	0.41199	NANOG.p2	D38412|Col11a2|12815|collagen, type XI, alpha 2
mm9_v1_chr6_-_53770687_53770818	0.40977	NANOG.p2	BC043099|Tril|66873|TLR4 interactor with leucine-rich repeats	BC059224|Tril|66873|TLR4 interactor with leucine-rich repeats	NM_025817|Tril|66873|TLR4 interactor with leucine-rich repeats
mm9_v1_chr15_+_39490991_39491064	0.400872	NANOG.p2	AK148339|Rims2|116838|regulating synaptic membrane exocytosis 2
mm9_v1_chr1_-_129998984_129999039	0.399365	NANOG.p2	BC066035|Zranb3|226409|zinc finger, RAN-binding domain containing 3	NM_027678|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK042139|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK083641|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK084943|Zranb3|226409|zinc finger, RAN-binding domain containing 3	AK085488|Zranb3|226409|zinc finger, RAN-binding domain containing 3
mm9_v1_chr10_-_20880559_20880789	0.396216	NANOG.p2	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr11_-_97372344_97372370	0.395863	NANOG.p2	AK051643|Srcin1|56013|SRC kinase signaling inhibitor 1
mm9_v1_chr17_-_90487479_90487653	0.394953	NANOG.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr4_-_82151180_82151288	0.393556	NANOG.p2	AK034793|Nfib|18028|nuclear factor I/B	Y07686|Nfib|18028|nuclear factor I/B	AK146480|Nfib|18028|nuclear factor I/B	NM_001113209|Nfib|18028|nuclear factor I/B	NM_001113210|Nfib|18028|nuclear factor I/B	NM_008687|Nfib|18028|nuclear factor I/B	AK034261|Nfib|18028|nuclear factor I/B	AK087480|Nfib|18028|nuclear factor I/B	AK084941|Nfib|18028|nuclear factor I/B
mm9_v1_chr2_+_10075220_10075229	0.386514	NANOG.p2	BC043314|Itih5|209378|inter-alpha (globulin) inhibitor H5
mm9_v1_chr15_+_91991704_91991862	0.386297	NANOG.p2	NM_001159647|Cntn1|12805|contactin 1	BC066864|Cntn1|12805|contactin 1
mm9_v1_chr9_+_56712829_56712839	0.370157	NANOG.p2	AK052394|Cspg4|121021|chondroitin sulfate proteoglycan 4
mm9_v1_chr8_-_37631772_37631789	0.361794	NANOG.p2	BC048730|Dlc1|50768|deleted in liver cancer 1
mm9_v1_chr6_-_99216494_99216530	0.354714	NANOG.p2	BC064764|Foxp1|108655|forkhead box P1	AK171994|Foxp1|108655|forkhead box P1	BC065386|Foxp1|108655|forkhead box P1	NM_001197321|Foxp1|108655|forkhead box P1	AK040800|Foxp1|108655|forkhead box P1
mm9_v1_chr11_-_99105293_99105435	0.354694	NANOG.p2	BC079890|Krt222|268481|keratin 222	AK031954|Krt222|268481|keratin 222	NM_172946|Krt222|268481|keratin 222	AK044068|Krt222|268481|keratin 222	AK138778|Krt222|268481|keratin 222
mm9_v1_chr9_+_45178485_45178507	0.346515	NANOG.p2	BC051127|Fxyd6|59095|FXYD domain-containing ion transport regulator 6	AK003888|Fxyd6|59095|FXYD domain-containing ion transport regulator 6
mm9_v1_chr16_+_45093784_45093803	0.343113	NANOG.p2	AK144183|Ccdc80|67896|coiled-coil domain containing 80
mm9_v1_chr7_-_106289635_106289638	0.336563	NANOG.p2	AK044129|Uvrag|78610|UV radiation resistance associated gene	AK089900|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr5_-_121459496_121459582	0.332092	NANOG.p2	BC042585|Rph3a|19894|rabphilin 3A	NM_011286|Rph3a|19894|rabphilin 3A
mm9_v1_chr4_+_130378728_130379372	0.331057	NANOG.p2	AK206079|Sdc3|20970|syndecan 3	AK180657|Sdc3|20970|syndecan 3	BC059031|Sdc3|20970|syndecan 3	AK087492|Sdc3|20970|syndecan 3	AK194562|Sdc3|20970|syndecan 3
mm9_v1_chr19_+_8665743_8665780	0.328041	NANOG.p2	NM_001164634|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	NM_031194|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8	AK031962|Slc22a8|19879|solute carrier family 22 (organic anion transporter), member 8
mm9_v1_chr1_-_14299936_14300280	0.324578	NANOG.p2	BC066860|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK045320|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK042412|Eya1|14048|eyes absent 1 homolog (Drosophila)	BC060260|Eya1|14048|eyes absent 1 homolog (Drosophila)	NM_010164|Eya1|14048|eyes absent 1 homolog (Drosophila)	AK153788|Eya1|14048|eyes absent 1 homolog (Drosophila)
mm9_v1_chr4_-_58219368_58219467	0.318913	NANOG.p2	AK052699|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	AF206329|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	NM_022814|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr17_+_27693821_27693843	0.317587	NANOG.p2	J04179|Hmga1|15361|high mobility group AT-hook 1
mm9_v1_chr19_+_7631935_7632013	0.316914	NANOG.p2	AK163505|Pla2g16|225845|phospholipase A2, group XVI	NM_139269|Pla2g16|225845|phospholipase A2, group XVI	AX775891|Pla2g16|225845|phospholipase A2, group XVI	AK052657|Pla2g16|225845|phospholipase A2, group XVI	AK039703|Pla2g16|225845|phospholipase A2, group XVI	AK042007|Pla2g16|225845|phospholipase A2, group XVI	BC024581|Pla2g16|225845|phospholipase A2, group XVI
mm9_v1_chr6_-_60778740_60778989	0.314068	NANOG.p2	BC046764|Snca|20617|synuclein, alpha	AK156316|Snca|20617|synuclein, alpha	AK014472|Snca|20617|synuclein, alpha	AF033261|Snca|20617|synuclein, alpha	NM_001042451|Snca|20617|synuclein, alpha
mm9_v1_chr9_-_96531911_96531965	0.31299	NANOG.p2	AB056433|Rasa2|114713|RAS p21 protein activator 2	AK034434|Rasa2|114713|RAS p21 protein activator 2	NM_053268|Rasa2|114713|RAS p21 protein activator 2	AK154499|Rasa2|114713|RAS p21 protein activator 2	AK166654|Rasa2|114713|RAS p21 protein activator 2
mm9_v1_chr8_+_26830480_26830683	0.311152	NANOG.p2	NM_028000|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC023111|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK144593|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC089556|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC062173|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK009455|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC099489|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr13_+_22135065_22135098	0.310135	NANOG.p2	NM_178198|Hist1h2bj|319183|histone cluster 1, H2bj
mm9_v1_chr2_+_44967779_44967818	0.303207	NANOG.p2	BC065800|Gm13476|433424|predicted gene 13476	NM_001177395|Gm13476|433424|predicted gene 13476
mm9_v1_chr5_+_27588579_27588623	0.302968	NANOG.p2	BC048383|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr2_+_55288297_55288380	0.288924	NANOG.p2	BC068167|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3
mm9_v1_chr5_-_24348240_24348246	0.288562	NANOG.p2	AK158213|Rheb|19744|Ras homolog enriched in brain
mm9_v1_chrM_+_11027_11268	0.283943	NANOG.p2	
mm9_v1_chr3_+_137004089_137004128	0.283828	NANOG.p2	AB034693|Emcn|59308|endomucin	AF060883|Emcn|59308|endomucin	AK164422|Emcn|59308|endomucin
mm9_v1_chr7_-_106289616_106289631	0.282515	NANOG.p2	BC034176|Uvrag|78610|UV radiation resistance associated gene	AK020590|Uvrag|78610|UV radiation resistance associated gene	AK043084|Uvrag|78610|UV radiation resistance associated gene	AK165185|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chrM_+_14143_14189	0.277675	NANOG.p2	
mm9_v1_chr2_+_125860507_125860527	0.263049	NANOG.p2	AK086639|Fgf7|14178|fibroblast growth factor 7	BC052847|Fgf7|14178|fibroblast growth factor 7
mm9_v1_chr7_-_123182257_123182257	0.2625	NANOG.p2	AK048143|Sox6|20679|SRY-box containing gene 6	NM_001025559|Sox6|20679|SRY-box containing gene 6
mm9_v1_chr3_-_57098670_57098869	0.257621	NANOG.p2	L15429|Tm4sf1|17112|transmembrane 4 superfamily member 1	L15443|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK133556|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK077326|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK164718|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr6_-_71390481_71390504	0.25479	NANOG.p2	BC050876|Rmnd5a|68477|required for meiotic nuclear division 5 homolog A (S. cerevisiae)
mm9_v1_chr16_+_6349108_6349144	0.252554	NANOG.p2	AK134833|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr18_+_69753035_69753127	0.246712	NANOG.p2	AK014343|Tcf4|21413|transcription factor 4	U16321|Tcf4|21413|transcription factor 4	AK132140|Tcf4|21413|transcription factor 4	BC014293|Tcf4|21413|transcription factor 4
mm9_v1_chr4_+_8617550_8617602	0.245571	NANOG.p2	AK171857|Chd7|320790|chromodomain helicase DNA binding protein 7	AK172025|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr16_-_85043886_85043990	0.241604	NANOG.p2	X15210|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr18_+_37979199_37979219	0.239339	NANOG.p2	AF464163|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	NM_033583|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464164|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr8_+_46970814_46970842	0.238385	NANOG.p2	AF002283|Pdlim3|53318|PDZ and LIM domain 3	NM_016798|Pdlim3|53318|PDZ and LIM domain 3	AK078421|Pdlim3|53318|PDZ and LIM domain 3	AK141331|Pdlim3|53318|PDZ and LIM domain 3	AK164054|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr5_-_122906470_122906515	0.236402	NANOG.p2	AK081191|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr3_-_88214215_88214225	0.236312	NANOG.p2	BC034333|Pmf1|67037|polyamine-modulated factor 1
mm9_v1_chr5_-_121459315_121459358	0.233872	NANOG.p2	D29965|Rph3a|19894|rabphilin 3A	AB112924|Rph3a|19894|rabphilin 3A
mm9_v1_chr12_+_87702066_87702202	0.232707	NANOG.p2	AK052256|Esrrb|26380|estrogen related receptor, beta	NM_001159500|Esrrb|26380|estrogen related receptor, beta	BC132595|Esrrb|26380|estrogen related receptor, beta	BC132597|Esrrb|26380|estrogen related receptor, beta
mm9_v1_chr18_+_61265225_61265605	0.232026	NANOG.p2	AK146069|Csf1r|12978|colony stimulating factor 1 receptor	NM_001037859|Csf1r|12978|colony stimulating factor 1 receptor	BC066863|Csf1r|12978|colony stimulating factor 1 receptor	BC050024|Csf1r|12978|colony stimulating factor 1 receptor	AK171241|Csf1r|12978|colony stimulating factor 1 receptor	AK156550|Csf1r|12978|colony stimulating factor 1 receptor	AK155565|Csf1r|12978|colony stimulating factor 1 receptor	AK155488|Csf1r|12978|colony stimulating factor 1 receptor	AK079247|Csf1r|12978|colony stimulating factor 1 receptor	AK155576|Csf1r|12978|colony stimulating factor 1 receptor	AK155858|Csf1r|12978|colony stimulating factor 1 receptor	AK154128|Csf1r|12978|colony stimulating factor 1 receptor	AK155640|Csf1r|12978|colony stimulating factor 1 receptor	AK155654|Csf1r|12978|colony stimulating factor 1 receptor	AK171386|Csf1r|12978|colony stimulating factor 1 receptor	AK004947|Csf1r|12978|colony stimulating factor 1 receptor	AK154556|Csf1r|12978|colony stimulating factor 1 receptor	AK154653|Csf1r|12978|colony stimulating factor 1 receptor	AK154699|Csf1r|12978|colony stimulating factor 1 receptor	AK076215|Csf1r|12978|colony stimulating factor 1 receptor	AK143545|Csf1r|12978|colony stimulating factor 1 receptor	X06368|Csf1r|12978|colony stimulating factor 1 receptor	X68932|Csf1r|12978|colony stimulating factor 1 receptor	AK080326|Csf1r|12978|colony stimulating factor 1 receptor	BC043054|Csf1r|12978|colony stimulating factor 1 receptor	AK089498|Csf1r|12978|colony stimulating factor 1 receptor	AK171543|Csf1r|12978|colony stimulating factor 1 receptor	BC036343|Csf1r|12978|colony stimulating factor 1 receptor	AK041299|Csf1r|12978|colony stimulating factor 1 receptor
mm9_v1_chr7_-_106289639_106289648	0.23196	NANOG.p2	AK165015|Uvrag|78610|UV radiation resistance associated gene	AK078085|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chrM_-_14069_14070	0.2294	NANOG.p2	AK138272|ND6|17722|NADH dehydrogenase subunit 6	AK140300|ND6|17722|NADH dehydrogenase subunit 6
mm9_v1_chr18_+_56591785_56591811	0.227098	NANOG.p2	NM_026240|Gramd3|107022|GRAM domain containing 3	AK018691|Gramd3|107022|GRAM domain containing 3	AK164050|Gramd3|107022|GRAM domain containing 3
mm9_v1_chr18_-_38443954_38444055	0.224991	NANOG.p2	BC127076|Pcdh12|53601|protocadherin 12	Y08715|Pcdh12|53601|protocadherin 12	AK048100|Pcdh12|53601|protocadherin 12	NM_017378|Pcdh12|53601|protocadherin 12	AK028374|Pcdh12|53601|protocadherin 12
mm9_v1_chr3_+_89586320_89586446	0.221258	NANOG.p2	AK211403|Ube2q1|70093|ubiquitin-conjugating enzyme E2Q (putative) 1
mm9_v1_chr5_-_143579060_143579087	0.215015	NANOG.p2	BC049818|Tnrc18|231861|trinucleotide repeat containing 18	NM_001122730|Tnrc18|231861|trinucleotide repeat containing 18	NM_178242|Tnrc18|231861|trinucleotide repeat containing 18
mm9_v1_chr4_+_138012860_138012969	0.213826	NANOG.p2	AK021100|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr8_+_96561097_96561129	0.213076	NANOG.p2	AK029629|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_001093757|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	NM_177767|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	AK156765|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr11_+_75578548_75578573	0.211185	NANOG.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr11_+_102254816_102254873	0.208927	NANOG.p2	BC046319|Rundc3a|51799|RUN domain containing 3A
mm9_v1_chr15_-_77950450_77950459	0.208679	NANOG.p2	AK045362|Cacng2|12300|calcium channel, voltage-dependent, gamma subunit 2
mm9_v1_chr15_+_58770843_58770951	0.207112	NANOG.p2	AJ300739|Ndufb9|66218|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm9_v1_chr15_+_8918001_8918118	0.205192	NANOG.p2	AK048152|Ranbp3l|223332|RAN binding protein 3-like	AK132406|Ranbp3l|223332|RAN binding protein 3-like	BC058706|Ranbp3l|223332|RAN binding protein 3-like	NM_198024|Ranbp3l|223332|RAN binding protein 3-like
mm9_v1_chr17_+_69788665_69788722	0.202446	NANOG.p2	NM_001145192|A330050F15Rik|320722|RIKEN cDNA A330050F15 gene	AK039494|A330050F15Rik|320722|RIKEN cDNA A330050F15 gene
mm9_v1_chr7_+_3596861_3596991	0.201011	NANOG.p2	AK172439|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	NM_146176|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	AK141718|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	AK044755|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	AK031774|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	BC030332|Cnot3|232791|CCR4-NOT transcription complex, subunit 3
mm9_v1_chrM_+_7714_7790	0.200998	NANOG.p2	AF093677|ATP6|17705|ATP synthase F0 subunit 6	BC069931|Gm10925|100191075|predicted gene 10925
mm9_v1_chr2_-_120070817_120071070	0.190778	NANOG.p2	AK049063|Pla2g4e|329502|phospholipase A2, group IVE	BC137899|Pla2g4e|329502|phospholipase A2, group IVE	BC145020|Pla2g4e|329502|phospholipase A2, group IVE	AB195277|Pla2g4e|329502|phospholipase A2, group IVE	BC066085|Pla2g4e|329502|phospholipase A2, group IVE	NM_177845|Pla2g4e|329502|phospholipase A2, group IVE
mm9_v1_chr17_-_79281817_79281954	0.189753	NANOG.p2	M93567|Eif2ak2|19106|eukaryotic translation initiation factor 2-alpha kinase 2	M65029|Eif2ak2|19106|eukaryotic translation initiation factor 2-alpha kinase 2	BC016422|Eif2ak2|19106|eukaryotic translation initiation factor 2-alpha kinase 2	AK028602|Eif2ak2|19106|eukaryotic translation initiation factor 2-alpha kinase 2	NM_011163|Eif2ak2|19106|eukaryotic translation initiation factor 2-alpha kinase 2
mm9_v1_chr5_+_13125413_13125592	0.188152	NANOG.p2	AK166127|LOC100503462|100503462|hypothetical LOC100503462	AK052051|LOC100503462|100503462|hypothetical LOC100503462
mm9_v1_chr9_-_15162159_15162231	0.187852	NANOG.p2	NM_176976|5830418K08Rik|319675|RIKEN cDNA 5830418K08 gene
mm9_v1_chr7_+_3596827_3596852	0.185684	NANOG.p2	AK046141|Cnot3|232791|CCR4-NOT transcription complex, subunit 3
mm9_v1_chr10_-_90616085_90616118	0.183243	NANOG.p2	AK186132|Tmpo|21917|thymopoietin	AK199505|Tmpo|21917|thymopoietin
mm9_v1_chrM_-_13886_13905	0.183149	NANOG.p2	
mm9_v1_chr2_-_165709697_165709718	0.181779	NANOG.p2	AK003657|Zmynd8|228880|zinc finger, MYND-type containing 8
mm9_v1_chrX_+_97170927_97171053	0.181723	NANOG.p2	AK028502|Eda|13607|ectodysplasin-A	AF016627|Eda|13607|ectodysplasin-A	AF016628|Eda|13607|ectodysplasin-A	AF016629|Eda|13607|ectodysplasin-A	AF016630|Eda|13607|ectodysplasin-A	DQ168876|Eda|13607|ectodysplasin-A	DQ168877|Eda|13607|ectodysplasin-A	DQ168878|Eda|13607|ectodysplasin-A	DQ168879|Eda|13607|ectodysplasin-A	DQ168880|Eda|13607|ectodysplasin-A	DQ168881|Eda|13607|ectodysplasin-A	NM_001177937|Eda|13607|ectodysplasin-A	NM_001177938|Eda|13607|ectodysplasin-A	NM_001177939|Eda|13607|ectodysplasin-A	NM_001177940|Eda|13607|ectodysplasin-A	NM_001177941|Eda|13607|ectodysplasin-A	NM_001177942|Eda|13607|ectodysplasin-A	NM_001177943|Eda|13607|ectodysplasin-A	NM_001177944|Eda|13607|ectodysplasin-A	NM_010099|Eda|13607|ectodysplasin-A	AF016631|Eda|13607|ectodysplasin-A	AJ243657|Eda|13607|ectodysplasin-A	AK040754|Eda|13607|ectodysplasin-A	AF004435|Eda|13607|ectodysplasin-A	AJ243658|Eda|13607|ectodysplasin-A	AK137551|Eda|13607|ectodysplasin-A	BC125387|Eda|13607|ectodysplasin-A	BC144790|Eda|13607|ectodysplasin-A	BC144791|Eda|13607|ectodysplasin-A
mm9_v1_chr4_-_132066370_132066424	0.17997	NANOG.p2	BC005672|Sesn2|230784|sestrin 2	NM_144907|Sesn2|230784|sestrin 2	AK170228|Sesn2|230784|sestrin 2	AK170547|Sesn2|230784|sestrin 2	AK143788|Sesn2|230784|sestrin 2
mm9_v1_chr9_-_119977358_119977413	0.178543	NANOG.p2	BC012653|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK035902|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK140010|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AF102269|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	NM_009987|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK045634|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK137388|Cx3cr1|13051|chemokine (C-X3-C) receptor 1	AK044557|Cx3cr1|13051|chemokine (C-X3-C) receptor 1
mm9_v1_chr11_+_75578120_75578179	0.178085	NANOG.p2	AK218111|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK180909|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr13_+_55546808_55546869	0.17672	NANOG.p2	AK146119|Grk6|26385|G protein-coupled receptor kinase 6	AF040747|Grk6|26385|G protein-coupled receptor kinase 6	AF040748|Grk6|26385|G protein-coupled receptor kinase 6	AF040749|Grk6|26385|G protein-coupled receptor kinase 6	BC075719|Grk6|26385|G protein-coupled receptor kinase 6	Y15798|Grk6|26385|G protein-coupled receptor kinase 6	Y15799|Grk6|26385|G protein-coupled receptor kinase 6	Y15797|Grk6|26385|G protein-coupled receptor kinase 6	Y15800|Grk6|26385|G protein-coupled receptor kinase 6
mm9_v1_chr14_-_118450875_118451546	0.171994	NANOG.p2	EU554632|Dct|13190|dopachrome tautomerase	AK214181|Dct|13190|dopachrome tautomerase	AK214448|Dct|13190|dopachrome tautomerase	AK217087|Dct|13190|dopachrome tautomerase	AK212164|Dct|13190|dopachrome tautomerase	AK219002|Dct|13190|dopachrome tautomerase	BC082330|Dct|13190|dopachrome tautomerase	AK209892|Dct|13190|dopachrome tautomerase	AK191654|Dct|13190|dopachrome tautomerase	BC067064|Dct|13190|dopachrome tautomerase	X63349|Dct|13190|dopachrome tautomerase	AK033040|Dct|13190|dopachrome tautomerase	NM_010024|Dct|13190|dopachrome tautomerase	AK202452|Dct|13190|dopachrome tautomerase
mm9_v1_chr18_+_23573977_23574064	0.170371	NANOG.p2	AF143543|Dtna|13527|dystrobrevin alpha	AK019477|Dtna|13527|dystrobrevin alpha	AK003829|Dtna|13527|dystrobrevin alpha	AF143542|Dtna|13527|dystrobrevin alpha	AF143544|Dtna|13527|dystrobrevin alpha
mm9_v1_chr6_-_35258102_35258131	0.167571	NANOG.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr3_+_28162135_28162218	0.162088	NANOG.p2	BC050866|Tnik|665113|TRAF2 and NCK interacting kinase	BC050868|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163007|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163008|Tnik|665113|TRAF2 and NCK interacting kinase	NM_001163009|Tnik|665113|TRAF2 and NCK interacting kinase	NM_026910|Tnik|665113|TRAF2 and NCK interacting kinase	AK041777|Tnik|665113|TRAF2 and NCK interacting kinase	AK133568|Tnik|665113|TRAF2 and NCK interacting kinase	AK039113|Tnik|665113|TRAF2 and NCK interacting kinase
mm9_v1_chr18_+_23573939_23573956	0.161081	NANOG.p2	BC040364|Dtna|13527|dystrobrevin alpha
mm9_v1_chr9_+_98325217_98325252	0.160588	NANOG.p2	AK011641|Rbp1|19659|retinol binding protein 1, cellular	BC091751|Rbp1|19659|retinol binding protein 1, cellular	BC018254|Rbp1|19659|retinol binding protein 1, cellular
mm9_v1_chr11_+_94189303_94189504	0.157041	NANOG.p2	NM_027799|Ankrd40|71452|ankyrin repeat domain 40	NM_146024|Ankrd40|71452|ankyrin repeat domain 40	BC023133|Ankrd40|71452|ankyrin repeat domain 40
mm9_v1_chr16_-_92400226_92400324	0.155546	NANOG.p2	AF237790|Rcan1|54720|regulator of calcineurin 1	AF263239|Rcan1|54720|regulator of calcineurin 1	BC013551|Rcan1|54720|regulator of calcineurin 1	AK077283|Rcan1|54720|regulator of calcineurin 1	NM_019466|Rcan1|54720|regulator of calcineurin 1
mm9_v1_chr13_+_81022644_81022695	0.152824	NANOG.p2	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr5_-_122907269_122907331	0.152459	NANOG.p2	AK195483|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK198267|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK202908|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AK209825|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC022584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr18_+_37467108_37467135	0.151666	NANOG.p2	AK036169|Pcdhb4|93875|protocadherin beta 4	AK143280|Pcdhb4|93875|protocadherin beta 4	AK160730|Pcdhb4|93875|protocadherin beta 4	NM_053129|Pcdhb4|93875|protocadherin beta 4	AK029277|Pcdhb4|93875|protocadherin beta 4	BC053098|Pcdhb4|93875|protocadherin beta 4
mm9_v1_chr5_-_138042267_138042299	0.151622	NANOG.p2	BC039620|Mospd3|68929|motile sperm domain containing 3	NM_030037|Mospd3|68929|motile sperm domain containing 3	BC034167|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr8_+_46970860_46970893	0.150434	NANOG.p2	AK016447|Pdlim3|53318|PDZ and LIM domain 3	BC070418|Pdlim3|53318|PDZ and LIM domain 3
mm9_v1_chr10_+_98725858_98725868	0.148289	NANOG.p2	AK088665|Dusp6|67603|dual specificity phosphatase 6	AK005062|Dusp6|67603|dual specificity phosphatase 6	AK088468|Dusp6|67603|dual specificity phosphatase 6	AK148192|Dusp6|67603|dual specificity phosphatase 6	AK159502|Dusp6|67603|dual specificity phosphatase 6	NM_026268|Dusp6|67603|dual specificity phosphatase 6	AK151126|Dusp6|67603|dual specificity phosphatase 6	AK152773|Dusp6|67603|dual specificity phosphatase 6
mm9_v1_chr5_-_24348170_24348237	0.147892	NANOG.p2	AY197373|Rheb|19744|Ras homolog enriched in brain	NM_053075|Rheb|19744|Ras homolog enriched in brain	BC012273|Rheb|19744|Ras homolog enriched in brain	AK151213|Rheb|19744|Ras homolog enriched in brain	AB039919|Rheb|19744|Ras homolog enriched in brain
mm9_v1_chr13_-_108516475_108516490	0.146635	NANOG.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr11_-_94154354_94154488	0.146611	NANOG.p2	BC055921|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr19_+_12535536_12535672	0.145835	NANOG.p2	L20315|Mpeg1|17476|macrophage expressed gene 1	BC129843|Mpeg1|17476|macrophage expressed gene 1	BC129844|Mpeg1|17476|macrophage expressed gene 1
mm9_v1_chr9_-_112090150_112090479	0.143321	NANOG.p2	BC128376|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AF324451|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_033264|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK159004|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK002950|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	BC027107|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	AK160860|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177615|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_001177620|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21	NM_028755|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr8_+_4238780_4238837	0.143239	NANOG.p2	AK165184|Map2k7|26400|mitogen-activated protein kinase kinase 7	BC070467|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060945|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060946|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF060947|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK031137|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr9_+_75623367_75623480	0.142796	NANOG.p2	BC141283|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chrX_+_13209894_13209986	0.142287	NANOG.p2	DQ103766|Gpr34|23890|G protein-coupled receptor 34	DQ103767|Gpr34|23890|G protein-coupled receptor 34	NM_011823|Gpr34|23890|G protein-coupled receptor 34	AK033675|Gpr34|23890|G protein-coupled receptor 34	AK039528|Gpr34|23890|G protein-coupled receptor 34	AK039041|Gpr34|23890|G protein-coupled receptor 34	AK140507|Gpr34|23890|G protein-coupled receptor 34
mm9_v1_chr1_-_89291303_89291307	0.13669	NANOG.p2	NM_001110227|Kcnj13|100040591|potassium inwardly-rectifying channel, subfamily J, member 13
mm9_v1_chr3_+_137004041_137004080	0.136042	NANOG.p2	NM_001163522|Emcn|59308|endomucin	NM_016885|Emcn|59308|endomucin	AK145825|Emcn|59308|endomucin	AK002616|Emcn|59308|endomucin	AK029348|Emcn|59308|endomucin	BC003706|Emcn|59308|endomucin
mm9_v1_chrX_-_35793335_35793510	0.135139	NANOG.p2	AK184164|Lamp2|16784|lysosomal-associated membrane protein 2	AK217258|Lamp2|16784|lysosomal-associated membrane protein 2	AK128946|Lamp2|16784|lysosomal-associated membrane protein 2
mm9_v1_chr16_-_56886260_56886287	0.135128	NANOG.p2	AK049837|Tmem45a|56277|transmembrane protein 45a	NM_019631|Tmem45a|56277|transmembrane protein 45a	AK081478|Tmem45a|56277|transmembrane protein 45a	BC064715|Tmem45a|56277|transmembrane protein 45a
mm9_v1_chr4_-_96220294_96220351	0.134788	NANOG.p2	AK045421|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	BC050832|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK033614|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	NM_010008|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6	AK084025|Cyp2j6|13110|cytochrome P450, family 2, subfamily j, polypeptide 6
mm9_v1_chr6_+_53523365_53523387	0.133849	NANOG.p2	AK052230|Creb5|231991|cAMP responsive element binding protein 5	AK052451|Creb5|231991|cAMP responsive element binding protein 5	AK154148|Creb5|231991|cAMP responsive element binding protein 5	NM_172728|Creb5|231991|cAMP responsive element binding protein 5	AK170128|Creb5|231991|cAMP responsive element binding protein 5	AK155537|Creb5|231991|cAMP responsive element binding protein 5	BC098487|Creb5|231991|cAMP responsive element binding protein 5
mm9_v1_chr9_+_96619800_96619904	0.131829	NANOG.p2	AK081067|Gm6328|622512|predicted gene 6328
mm9_v1_chrX_-_165015162_165015164	0.130302	NANOG.p2	AK147370|Frmpd4|333605|FERM and PDZ domain containing 4	NM_001033330|Frmpd4|333605|FERM and PDZ domain containing 4
mm9_v1_chr1_-_164790057_164790069	0.127517	NANOG.p2	AK143940|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr8_+_97197870_97198051	0.126733	NANOG.p2	AK185594|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK195499|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205549|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK207967|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK212239|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK214075|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK216087|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK218146|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK220110|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK206178|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK190102|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK205025|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein	AK005851|Arl2bp|107566|ADP-ribosylation factor-like 2 binding protein
mm9_v1_chr16_-_19983049_19983121	0.123952	NANOG.p2	AY350736|Klhl6|239743|kelch-like 6 (Drosophila)	BC100568|Klhl6|239743|kelch-like 6 (Drosophila)	NM_183390|Klhl6|239743|kelch-like 6 (Drosophila)
mm9_v1_chr3_+_89225539_89225564	0.12307	NANOG.p2	NM_001113331|Shc1|20416|src homology 2 domain-containing transforming protein C1	AK155158|Shc1|20416|src homology 2 domain-containing transforming protein C1
mm9_v1_chr14_+_63760617_63760645	0.121241	NANOG.p2	AK190827|Ctsb|13030|cathepsin B
mm9_v1_chr3_+_121747377_121747377	0.119725	NANOG.p2	AF000149|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	BC057853|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4	NM_007378|Abca4|11304|ATP-binding cassette, sub-family A (ABC1), member 4
mm9_v1_chr8_+_4238838_4238860	0.117997	NANOG.p2	AK049267|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr15_+_78757171_78757220	0.117945	NANOG.p2	BC002063|Lgals1|16852|lectin, galactose binding, soluble 1	X51903|Lgals1|16852|lectin, galactose binding, soluble 1	X15986|Lgals1|16852|lectin, galactose binding, soluble 1	X53067|Lgals1|16852|lectin, galactose binding, soluble 1	BC099479|Lgals1|16852|lectin, galactose binding, soluble 1	M57470|Lgals1|16852|lectin, galactose binding, soluble 1	M33214|Lgals1|16852|lectin, galactose binding, soluble 1
mm9_v1_chr16_+_49911557_49911575	0.115694	NANOG.p2	AK164165|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	AK021021|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr3_-_78949796_78949796	0.115006	NANOG.p2	BC067056|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2	NM_001099624|Rapgef2|76089|Rap guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr5_-_49280703_49280795	0.112967	NANOG.p2	AF453243|Kcnip4|80334|Kv channel interacting protein 4	AK165773|Kcnip4|80334|Kv channel interacting protein 4	AK049662|Kcnip4|80334|Kv channel interacting protein 4	DQ148503|Kcnip4|80334|Kv channel interacting protein 4	AK039048|Kcnip4|80334|Kv channel interacting protein 4	NM_030265|Kcnip4|80334|Kv channel interacting protein 4
mm9_v1_chr1_-_180259089_180259120	0.112963	NANOG.p2	AK049600|Hnrnpu|51810|heterogeneous nuclear ribonucleoprotein U
mm9_v1_chr14_+_63761424_63761426	0.110748	NANOG.p2	AK218343|Ctsb|13030|cathepsin B	AK219981|Ctsb|13030|cathepsin B
mm9_v1_chr9_-_96233411_96233654	0.110568	NANOG.p2	AK217555|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK213033|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK205378|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK217181|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK178890|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK181142|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK185963|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK212665|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK214140|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK216038|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218295|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide	AK218384|Atp1b3|11933|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm9_v1_chr18_+_69753146_69753168	0.109747	NANOG.p2	AK151433|Tcf4|21413|transcription factor 4
mm9_v1_chr12_+_113052385_113052495	0.107457	NANOG.p2	AK171099|Zfyve21|68520|zinc finger, FYVE domain containing 21	AK139356|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC019521|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC132248|Zfyve21|68520|zinc finger, FYVE domain containing 21	BC132250|Zfyve21|68520|zinc finger, FYVE domain containing 21	NM_026752|Zfyve21|68520|zinc finger, FYVE domain containing 21	AK003661|Zfyve21|68520|zinc finger, FYVE domain containing 21
mm9_v1_chr19_+_21354915_21354945	0.10635	NANOG.p2	AK185148|Zfand5|22682|zinc finger, AN1-type domain 5
mm9_v1_chr10_+_98486068_98486102	0.105936	NANOG.p2	AK136761|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr2_+_164595389_164595402	0.105682	NANOG.p2	AK160740|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr12_-_100801791_100801815	0.104233	NANOG.p2	AK053772|Foxn3|71375|forkhead box N3
mm9_v1_chr1_-_82232392_82232507	0.103814	NANOG.p2	AK141842|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr9_-_13631482_13631562	0.103304	NANOG.p2	BC056968|Cep57|74360|centrosomal protein 57	AY251192|Cep57|74360|centrosomal protein 57	AK014873|Cep57|74360|centrosomal protein 57	BC030353|Cep57|74360|centrosomal protein 57	AK129053|Cep57|74360|centrosomal protein 57	NM_026665|Cep57|74360|centrosomal protein 57
mm9_v1_chr10_+_26492282_26492396	0.102048	NANOG.p2	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr10_+_38685309_38685399	0.101302	NANOG.p2	AK053234|Lama4|16775|laminin, alpha 4	NM_010681|Lama4|16775|laminin, alpha 4	AK031189|Lama4|16775|laminin, alpha 4	AK087015|Lama4|16775|laminin, alpha 4	AK164903|Lama4|16775|laminin, alpha 4	U69176|Lama4|16775|laminin, alpha 4
mm9_v1_chr12_-_52792851_52792915	0.100522	NANOG.p2	BC138055|Strn3|94186|striatin, calmodulin binding protein 3	BC145127|Strn3|94186|striatin, calmodulin binding protein 3	AF307777|Strn3|94186|striatin, calmodulin binding protein 3	EF685152|Strn3|94186|striatin, calmodulin binding protein 3	AK139183|Strn3|94186|striatin, calmodulin binding protein 3	AK140447|Strn3|94186|striatin, calmodulin binding protein 3	AK164967|Strn3|94186|striatin, calmodulin binding protein 3	NM_001172098|Strn3|94186|striatin, calmodulin binding protein 3	NM_052973|Strn3|94186|striatin, calmodulin binding protein 3
mm9_v1_chr14_+_28051224_28051247	0.100456	NANOG.p2	AK004600|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	NM_027871|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036737|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036749|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr3_-_141645214_141645214	0.100084	NANOG.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr4_-_35792385_35792444	0.0983454	NANOG.p2	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr5_+_35341726_35341726	0.0982359	NANOG.p2	AK014569|Rgs12|71729|regulator of G-protein signaling 12	AK161129|Rgs12|71729|regulator of G-protein signaling 12	NM_001163512|Rgs12|71729|regulator of G-protein signaling 12
mm9_v1_chr8_+_96561135_96561146	0.0976328	NANOG.p2	AK049824|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1	BC040267|Ogfod1|270086|2-oxoglutarate and iron-dependent oxygenase domain containing 1
mm9_v1_chr1_+_12682510_12682540	0.096679	NANOG.p2	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr7_+_97575023_97575086	0.0957555	NANOG.p2	BC060150|Ccdc89|70054|coiled-coil domain containing 89
mm9_v1_chr9_-_45743950_45744018	0.092157	NANOG.p2	BC003795|Tagln|21345|transgelin	AK002880|Tagln|21345|transgelin	L41154|Tagln|21345|transgelin	U36588|Tagln|21345|transgelin	AK077235|Tagln|21345|transgelin
mm9_v1_chr19_+_9026020_9026327	0.0919441	NANOG.p2	AK199642|Mta2|23942|metastasis-associated gene family, member 2	AK219174|Mta2|23942|metastasis-associated gene family, member 2	AK195366|Mta2|23942|metastasis-associated gene family, member 2	AK209683|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr9_+_94570310_94570389	0.0915503	NANOG.p2	NM_177909|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK037058|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC153825|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC099942|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK172687|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK156494|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm9_v1_chr16_-_57754816_57754849	0.0912638	NANOG.p2	BC011061|Col8a1|12837|collagen, type VIII, alpha 1	BC058281|Col8a1|12837|collagen, type VIII, alpha 1	AK159542|Col8a1|12837|collagen, type VIII, alpha 1	AK029203|Col8a1|12837|collagen, type VIII, alpha 1	AK018742|Col8a1|12837|collagen, type VIII, alpha 1	AK032048|Col8a1|12837|collagen, type VIII, alpha 1	AK046370|Col8a1|12837|collagen, type VIII, alpha 1	NM_007739|Col8a1|12837|collagen, type VIII, alpha 1
mm9_v1_chr2_-_7317824_7317824	0.0903918	NANOG.p2	AK160861|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110231|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr11_+_94871620_94871635	0.0897123	NANOG.p2	BC049954|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chrX_+_16196823_16196987	0.0886889	NANOG.p2	AK146612|Maoa|17161|monoamine oxidase A	NM_173740|Maoa|17161|monoamine oxidase A	BC029100|Maoa|17161|monoamine oxidase A	AK004337|Maoa|17161|monoamine oxidase A	AK155052|Maoa|17161|monoamine oxidase A	AK164457|Maoa|17161|monoamine oxidase A
mm9_v1_chr6_+_81991613_81991706	0.0855141	NANOG.p2	AK145140|Fam176a|232146|family with sequence similarity 176, member A	NM_145570|Fam176a|232146|family with sequence similarity 176, member A	BC027150|Fam176a|232146|family with sequence similarity 176, member A	AK166504|Fam176a|232146|family with sequence similarity 176, member A	BC014699|Fam176a|232146|family with sequence similarity 176, member A
mm9_v1_chr10_-_13043959_13044096	0.0845598	NANOG.p2	BC130264|Phactr2|215789|phosphatase and actin regulator 2	AK142930|Phactr2|215789|phosphatase and actin regulator 2	NM_001033257|Phactr2|215789|phosphatase and actin regulator 2	NM_001195096|Phactr2|215789|phosphatase and actin regulator 2
mm9_v1_chr14_-_47010184_47010343	0.0800332	NANOG.p2	X56848|Bmp4|12159|bone morphogenetic protein 4	BC034053|Bmp4|12159|bone morphogenetic protein 4	BC013459|Bmp4|12159|bone morphogenetic protein 4	AK136527|Bmp4|12159|bone morphogenetic protein 4	NM_007554|Bmp4|12159|bone morphogenetic protein 4	AK145359|Bmp4|12159|bone morphogenetic protein 4
mm9_v1_chr2_+_164595415_164595435	0.0794423	NANOG.p2	AK003722|Ube2c|68612|ubiquitin-conjugating enzyme E2C	AK136186|Ube2c|68612|ubiquitin-conjugating enzyme E2C	NM_026785|Ube2c|68612|ubiquitin-conjugating enzyme E2C
mm9_v1_chr12_+_78576551_78576710	0.0794085	NANOG.p2	AK188352|Fut8|53618|fucosyltransferase 8	AK210295|Fut8|53618|fucosyltransferase 8	AK216622|Fut8|53618|fucosyltransferase 8
mm9_v1_chr12_+_101444303_101444345	0.0787145	NANOG.p2	AK180928|Calm1|12313|calmodulin 1
mm9_v1_chrX_+_148237785_148237953	0.0786627	NANOG.p2	AK163416|Huwe1|59026|HECT, UBA and WWE domain containing 1	NM_021523|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK049460|Huwe1|59026|HECT, UBA and WWE domain containing 1	DQ097265|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK045183|Huwe1|59026|HECT, UBA and WWE domain containing 1	AY772010|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165140|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK165648|Huwe1|59026|HECT, UBA and WWE domain containing 1	AK031374|Huwe1|59026|HECT, UBA and WWE domain containing 1
mm9_v1_chr11_+_21472279_21472320	0.0781054	NANOG.p2	AK083042|Wdpcp|216560|WD repeat containing planar cell polarity effector	NM_145425|Wdpcp|216560|WD repeat containing planar cell polarity effector	AK082370|Wdpcp|216560|WD repeat containing planar cell polarity effector	AK043672|Wdpcp|216560|WD repeat containing planar cell polarity effector	BC141166|Wdpcp|216560|WD repeat containing planar cell polarity effector	AF424701|Wdpcp|216560|WD repeat containing planar cell polarity effector
mm9_v1_chr14_+_124059330_124059403	0.0777415	NANOG.p2	AK051773|Itgbl1|223272|integrin, beta-like 1	NM_145467|Itgbl1|223272|integrin, beta-like 1	BC020152|Itgbl1|223272|integrin, beta-like 1	AK029068|Itgbl1|223272|integrin, beta-like 1
mm9_v1_chr15_+_3220766_3220979	0.0771316	NANOG.p2	NM_001042613|Sepp1|20363|selenoprotein P, plasma, 1	NM_001042614|Sepp1|20363|selenoprotein P, plasma, 1	AK188386|Sepp1|20363|selenoprotein P, plasma, 1	NM_009155|Sepp1|20363|selenoprotein P, plasma, 1
mm9_v1_chr12_-_74147698_74147707	0.0740139	NANOG.p2	AK131925|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	NM_009189|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)	AK144753|Six1|20471|sine oculis-related homeobox 1 homolog (Drosophila)
mm9_v1_chr1_+_134195202_134195202	0.0738464	NANOG.p2	AK080356|Klhdc8a|213417|kelch domain containing 8A	NM_144810|Klhdc8a|213417|kelch domain containing 8A
mm9_v1_chr2_+_31951149_31951239	0.0738277	NANOG.p2	AK052883|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	NM_145521|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	BC016136|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3
mm9_v1_chr17_+_48485725_48485880	0.0737103	NANOG.p2	BC052784|Trem2|83433|triggering receptor expressed on myeloid cells 2	NM_031254|Trem2|83433|triggering receptor expressed on myeloid cells 2	AK171358|Trem2|83433|triggering receptor expressed on myeloid cells 2	AK155163|Trem2|83433|triggering receptor expressed on myeloid cells 2	AY024348|Trem2|83433|triggering receptor expressed on myeloid cells 2	AF213458|Trem2|83433|triggering receptor expressed on myeloid cells 2	AK039477|Trem2|83433|triggering receptor expressed on myeloid cells 2	BC033485|Trem2|83433|triggering receptor expressed on myeloid cells 2	BC032959|Trem2|83433|triggering receptor expressed on myeloid cells 2	AY187009|Trem2|83433|triggering receptor expressed on myeloid cells 2	AY024349|Trem2|83433|triggering receptor expressed on myeloid cells 2
mm9_v1_chr8_+_59799779_59799785	0.0731531	NANOG.p2	AK035160|Hand2|15111|heart and neural crest derivatives expressed transcript 2	NM_010402|Hand2|15111|heart and neural crest derivatives expressed transcript 2
mm9_v1_chr9_-_40153864_40153891	0.0717614	NANOG.p2	BC070451|Gramd1b|235283|GRAM domain containing 1B
mm9_v1_chr8_-_42127124_42127219	0.0708444	NANOG.p2	AF173380|Mtus1|102103|mitochondrial tumor suppressor 1	AF493235|Mtus1|102103|mitochondrial tumor suppressor 1	AK031693|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr2_-_77541328_77541435	0.0708177	NANOG.p2	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr2_+_4480799_4480871	0.0702989	NANOG.p2	AK077327|Frmd4a|209630|FERM domain containing 4A	NM_001177844|Frmd4a|209630|FERM domain containing 4A	AK148414|Frmd4a|209630|FERM domain containing 4A	AK029073|Frmd4a|209630|FERM domain containing 4A	AK171532|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr18_+_37915375_37915594	0.0689585	NANOG.p2	BC064675|Pcdhga11|93723|protocadherin gamma subfamily A, 11	NM_033594|Pcdhga11|93723|protocadherin gamma subfamily A, 11	BC059837|Pcdhga11|93723|protocadherin gamma subfamily A, 11	AY013794|Pcdhga11|93723|protocadherin gamma subfamily A, 11
mm9_v1_chr18_+_37925619_37925770	0.0671296	NANOG.p2	BC054528|Pcdhga12|93724|protocadherin gamma subfamily A, 12	U88550|Pcdhga12|93724|protocadherin gamma subfamily A, 12	AY013795|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr2_-_7317513_7317626	0.0670627	NANOG.p2	AF090696|Celf2|14007|CUGBP, Elav-like family member 2	NM_001110232|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr11_+_100442602_100442668	0.066839	NANOG.p2	AK190081|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK211066|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr1_+_12682572_12682637	0.0658894	NANOG.p2	AK028285|Sulf1|240725|sulfatase 1	AK045002|Sulf1|240725|sulfatase 1
mm9_v1_chr9_+_75623899_75624064	0.065529	NANOG.p2	L41145|Bmp5|12160|bone morphogenetic protein 5	BC100751|Bmp5|12160|bone morphogenetic protein 5	BC100752|Bmp5|12160|bone morphogenetic protein 5	BC100753|Bmp5|12160|bone morphogenetic protein 5	BC100754|Bmp5|12160|bone morphogenetic protein 5	AK160412|Bmp5|12160|bone morphogenetic protein 5
mm9_v1_chr8_+_72696276_72696336	0.0654103	NANOG.p2	AK032711|Tmem161a|234371|transmembrane protein 161A	AK082916|Tmem161a|234371|transmembrane protein 161A	AK049979|Tmem161a|234371|transmembrane protein 161A	NM_145597|Tmem161a|234371|transmembrane protein 161A	AK082758|Tmem161a|234371|transmembrane protein 161A	AK147962|Tmem161a|234371|transmembrane protein 161A	AK088569|Tmem161a|234371|transmembrane protein 161A	AK167517|Tmem161a|234371|transmembrane protein 161A	BC021367|Tmem161a|234371|transmembrane protein 161A
mm9_v1_chr5_-_28564412_28564412	0.0642568	NANOG.p2	AK035828|Cnpy1|269637|canopy 1 homolog (zebrafish)	NM_175651|Cnpy1|269637|canopy 1 homolog (zebrafish)
mm9_v1_chr1_-_164790079_164790095	0.0638033	NANOG.p2	AK042457|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr2_+_152987036_152987075	0.0636158	NANOG.p2	NM_133847|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK083541|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC116320|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK035622|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chr5_+_137463234_137463356	0.0634892	NANOG.p2	AK053320|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK013195|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK033360|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	AK157741|Plod3|26433|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm9_v1_chr6_-_30254273_30254567	0.0627248	NANOG.p2	U19854|Ube2h|22214|ubiquitin-conjugating enzyme E2H	BC008517|Ube2h|22214|ubiquitin-conjugating enzyme E2H	AK131688|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001170345|Gm2058|100039133|predicted gene 2058	AK161414|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_001169576|Ube2h|22214|ubiquitin-conjugating enzyme E2H	NM_009459|Ube2h|22214|ubiquitin-conjugating enzyme E2H
mm9_v1_chr1_+_59543450_59543567	0.0619526	NANOG.p2	
mm9_v1_chr13_+_119503505_119503505	0.0616496	NANOG.p2	AK045267|Fgf10|14165|fibroblast growth factor 10	NM_008002|Fgf10|14165|fibroblast growth factor 10
mm9_v1_chr17_+_12312128_12312218	0.0615705	NANOG.p2	AK005139|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	NM_026644|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	AK166917|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	BC047281|Agpat4|68262|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm9_v1_chr5_-_101001209_101001243	0.0611173	NANOG.p2	AF263458|Plac8|231507|placenta-specific 8	AK007369|Plac8|231507|placenta-specific 8	NM_139198|Plac8|231507|placenta-specific 8	AJ422151|Plac8|231507|placenta-specific 8
mm9_v1_chr4_-_58219478_58219506	0.0596749	NANOG.p2	AK035333|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	AK087058|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr11_-_116713532_116713613	0.0588464	NANOG.p2	AF250135|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr18_+_74442753_74442835	0.058253	NANOG.p2	NM_028948|Ccdc11|74453|coiled-coil domain containing 11	AK016821|Ccdc11|74453|coiled-coil domain containing 11	AK162352|Ccdc11|74453|coiled-coil domain containing 11	BC099500|Ccdc11|74453|coiled-coil domain containing 11
mm9_v1_chr5_+_150076605_150076688	0.0574826	NANOG.p2	AK004002|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	BC026209|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	NM_009663|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	AK075967|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein	M96554|Alox5ap|11690|arachidonate 5-lipoxygenase activating protein
mm9_v1_chr2_+_152987262_152987297	0.0573783	NANOG.p2	AK162435|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK048158|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK171487|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	BC110309|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK088012|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK047497|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AK087048|Tm9sf4|99237|transmembrane 9 superfamily protein member 4	AB093220|Tm9sf4|99237|transmembrane 9 superfamily protein member 4
mm9_v1_chrX_-_47150892_47150921	0.0562689	NANOG.p2	AK030452|Igsf1|209268|immunoglobulin superfamily, member 1	BC089474|Igsf1|209268|immunoglobulin superfamily, member 1	AY227771|Igsf1|209268|immunoglobulin superfamily, member 1	AY227772|Igsf1|209268|immunoglobulin superfamily, member 1	BC100420|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177591|Igsf1|209268|immunoglobulin superfamily, member 1	NM_177915|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chr10_+_3366075_3366075	0.0559404	NANOG.p2	AK157384|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170800|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170801|Ipcef1|320495|interaction protein for cytohesin exchange factors 1	NM_001170802|Ipcef1|320495|interaction protein for cytohesin exchange factors 1
mm9_v1_chr2_+_51893618_51893676	0.0546946	NANOG.p2	AK139985|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	NM_009398|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	U83903|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6	BC021155|Tnfaip6|21930|tumor necrosis factor alpha induced protein 6
mm9_v1_chr18_+_66618186_66618270	0.0534271	NANOG.p2	AK143990|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK169914|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK043856|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AK088556|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	AB041230|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	NM_021451|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1	BC050821|Pmaip1|58801|phorbol-12-myristate-13-acetate-induced protein 1
mm9_v1_chr3_+_60432922_60432975	0.0530247	NANOG.p2	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr6_-_124761078_124761358	0.0524827	NANOG.p2	AK216486|Tpi1|21991|triosephosphate isomerase 1	AK201708|Tpi1|21991|triosephosphate isomerase 1	AK191907|Tpi1|21991|triosephosphate isomerase 1	AK191323|Tpi1|21991|triosephosphate isomerase 1	AK190112|Tpi1|21991|triosephosphate isomerase 1	AK204501|Tpi1|21991|triosephosphate isomerase 1
mm9_v1_chr7_-_106289651_106289675	0.0520114	NANOG.p2	NM_178635|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr6_-_54543121_54543160	0.051786	NANOG.p2	BC029109|Fkbp14|231997|FK506 binding protein 14	NM_153573|Fkbp14|231997|FK506 binding protein 14	BC034313|Fkbp14|231997|FK506 binding protein 14	AK081692|Fkbp14|231997|FK506 binding protein 14	AK044876|Fkbp14|231997|FK506 binding protein 14
mm9_v1_chr9_+_48863746_48863781	0.0517675	NANOG.p2	AK167937|Zw10|26951|ZW10 homolog (Drosophila), centromere/kinetochore protein
mm9_v1_chr11_-_21471829_21471936	0.0511116	NANOG.p2	AK005237|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	NM_008618|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)
mm9_v1_chr1_+_129702056_129702170	0.0500349	NANOG.p2	AK033697|Ccnt2|72949|cyclin T2
mm9_v1_chr11_+_117623703_117623821	0.049339	NANOG.p2	AK137381|Tnrc6c|217351|trinucleotide repeat containing 6C
mm9_v1_chr12_+_53800302_53800317	0.048238	NANOG.p2	DQ233645|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr2_-_77357674_77357722	0.0466964	NANOG.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr2_-_60589059_60589160	0.0466239	NANOG.p2	AK011205|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr11_-_116711485_116711487	0.0465366	NANOG.p2	
mm9_v1_chr19_-_32177613_32177629	0.0460114	NANOG.p2	BC137898|Asah2|54447|N-acylsphingosine amidohydrolase 2	BC145016|Asah2|54447|N-acylsphingosine amidohydrolase 2	AB037181|Asah2|54447|N-acylsphingosine amidohydrolase 2	NM_018830|Asah2|54447|N-acylsphingosine amidohydrolase 2
mm9_v1_chr19_+_9026569_9026592	0.0450677	NANOG.p2	
mm9_v1_chr4_-_58219559_58219619	0.044443	NANOG.p2	AK045217|Svep1|64817|sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
mm9_v1_chr15_-_13103346_13103429	0.0440853	NANOG.p2	NM_007666|Cdh6|12563|cadherin 6	AK134611|Cdh6|12563|cadherin 6
mm9_v1_chr19_-_41289262_41289457	0.0439337	NANOG.p2	AK008994|Tm9sf3|107358|transmembrane 9 superfamily member 3	AK159802|Tm9sf3|107358|transmembrane 9 superfamily member 3
mm9_v1_chr6_-_13821449_13821517	0.043365	NANOG.p2	BC070405|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK002763|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK011259|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK035027|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK136158|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK028169|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene	AK152937|2610001J05Rik|66520|RIKEN cDNA 2610001J05 gene
mm9_v1_chrX_-_73119876_73119897	0.0424904	NANOG.p2	BC005459|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr19_+_9023469_9023512	0.0421755	NANOG.p2	AK180875|Mta2|23942|metastasis-associated gene family, member 2	AK185607|Mta2|23942|metastasis-associated gene family, member 2	AK210254|Mta2|23942|metastasis-associated gene family, member 2	AK211099|Mta2|23942|metastasis-associated gene family, member 2	AK218258|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr17_-_49703586_49703636	0.0418044	NANOG.p2	AK162940|Daam2|76441|dishevelled associated activator of morphogenesis 2
mm9_v1_chr3_-_116671720_116671775	0.0416002	NANOG.p2	AK136939|Palmd|114301|palmdelphin
mm9_v1_chr10_+_79451369_79451426	0.0415351	NANOG.p2	BC018482|Cnn2|12798|calponin 2	BC009144|Cnn2|12798|calponin 2	AK189304|Cnn2|12798|calponin 2	BC008181|Cnn2|12798|calponin 2
mm9_v1_chr8_+_4238718_4238771	0.0413387	NANOG.p2	NM_001042557|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_001164172|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_011944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022112|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022113|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr6_+_143156520_143156614	0.0410722	NANOG.p2	AK004338|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr16_+_44394895_44394931	0.0407568	NANOG.p2	BC100518|Wdr52|212517|WD repeat domain 52	NM_001033247|Wdr52|212517|WD repeat domain 52	BC050980|Wdr52|212517|WD repeat domain 52
mm9_v1_chr14_+_79915429_79915530	0.0401977	NANOG.p2	AK132456|Elf1|13709|E74-like factor 1	U19617|Elf1|13709|E74-like factor 1	AK156098|Elf1|13709|E74-like factor 1	BC037743|Elf1|13709|E74-like factor 1	BC027532|Elf1|13709|E74-like factor 1	BC053914|Elf1|13709|E74-like factor 1
mm9_v1_chr2_+_121134843_121134847	0.04005	NANOG.p2	AK018185|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr13_+_16106279_16106315	0.0394862	NANOG.p2	NM_008380|Inhba|16323|inhibin beta-A	X69619|Inhba|16323|inhibin beta-A	BC053527|Inhba|16323|inhibin beta-A
mm9_v1_chr19_+_42007957_42008102	0.0394249	NANOG.p2	NM_023740|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK151505|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK168042|Zdhhc16|74168|zinc finger, DHHC domain containing 16	BC010835|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AF176814|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK183781|Zdhhc16|74168|zinc finger, DHHC domain containing 16
mm9_v1_chr11_-_120092784_120092898	0.0391237	NANOG.p2	AK034741|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene	AK162948|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene	AK013668|2900052L18Rik|76835|RIKEN cDNA 2900052L18 gene
mm9_v1_chr10_+_126921038_126921212	0.038366	NANOG.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr11_-_21471767_21471820	0.0365247	NANOG.p2	AK168545|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK002404|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	BC050940|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK008270|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK002395|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	M29462|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK164785|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK077724|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK046369|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)
mm9_v1_chr17_+_70871393_70871416	0.036201	NANOG.p2	AK036307|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr4_+_119487105_119487332	0.0360539	NANOG.p2	AY454348|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC058336|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	NM_010657|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454345|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr3_-_88229007_88229060	0.0358454	NANOG.p2	BC052771|Slc25a44|229517|solute carrier family 25, member 44	AK166331|Slc25a44|229517|solute carrier family 25, member 44	AK169886|Slc25a44|229517|solute carrier family 25, member 44	AK044648|Slc25a44|229517|solute carrier family 25, member 44	AK046586|Slc25a44|229517|solute carrier family 25, member 44	AK079532|Slc25a44|229517|solute carrier family 25, member 44	AK165159|Slc25a44|229517|solute carrier family 25, member 44	AK083470|Slc25a44|229517|solute carrier family 25, member 44	AK083273|Slc25a44|229517|solute carrier family 25, member 44	AK144731|Slc25a44|229517|solute carrier family 25, member 44	AK166011|Slc25a44|229517|solute carrier family 25, member 44	AK168955|Slc25a44|229517|solute carrier family 25, member 44	AK032960|Slc25a44|229517|solute carrier family 25, member 44	AK134914|Slc25a44|229517|solute carrier family 25, member 44	NM_001145876|Slc25a44|229517|solute carrier family 25, member 44	NM_001145877|Slc25a44|229517|solute carrier family 25, member 44	NM_178696|Slc25a44|229517|solute carrier family 25, member 44
mm9_v1_chr18_-_14002490_14002628	0.0350871	NANOG.p2	BC023458|Zfp521|225207|zinc finger protein 521
mm9_v1_chr2_-_155979971_155980032	0.0347484	NANOG.p2	AK046526|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr10_+_74636715_74636718	0.0345628	NANOG.p2	AK017213|Bcr|110279|breakpoint cluster region
mm9_v1_chr10_+_98478207_98478246	0.034167	NANOG.p2	BC025199|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr10_+_127927057_127927088	0.03412	NANOG.p2	
mm9_v1_chr18_+_63112372_63112770	0.0336154	NANOG.p2	AK190259|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191643|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191811|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK191857|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK192996|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK198042|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AK214514|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	AB023957|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1	BC065780|Apcdd1|494504|adenomatosis polyposis coli down-regulated 1
mm9_v1_chr12_+_101202708_101202902	0.0333971	NANOG.p2	NM_001164426|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_001164427|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_146037|Kcnk13|217826|potassium channel, subfamily K, member 13	AK158645|Kcnk13|217826|potassium channel, subfamily K, member 13	AK155396|Kcnk13|217826|potassium channel, subfamily K, member 13	AK089394|Kcnk13|217826|potassium channel, subfamily K, member 13	AK134730|Kcnk13|217826|potassium channel, subfamily K, member 13	AK170504|Kcnk13|217826|potassium channel, subfamily K, member 13
mm9_v1_chr13_-_104623606_104623708	0.0329469	NANOG.p2	BC005691|Erbb2ip|59079|Erbb2 interacting protein
mm9_v1_chrX_-_47141382_47141419	0.0324524	NANOG.p2	BC119264|Igsf1|209268|immunoglobulin superfamily, member 1	BC119266|Igsf1|209268|immunoglobulin superfamily, member 1	BC144762|Igsf1|209268|immunoglobulin superfamily, member 1	AK076427|Igsf1|209268|immunoglobulin superfamily, member 1	AY227774|Igsf1|209268|immunoglobulin superfamily, member 1	AK030701|Igsf1|209268|immunoglobulin superfamily, member 1	NM_183336|Igsf1|209268|immunoglobulin superfamily, member 1
mm9_v1_chr9_+_69855789_69855998	0.0323621	NANOG.p2	AF071429|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2	AK161900|Bnip2|12175|BCL2/adenovirus E1B interacting protein 2
mm9_v1_chr2_+_109120894_109121025	0.0321744	NANOG.p2	BC016095|Kif18a|228421|kinesin family member 18A	NM_139303|Kif18a|228421|kinesin family member 18A	AK049197|Kif18a|228421|kinesin family member 18A	AK135735|Kif18a|228421|kinesin family member 18A	AK082913|Kif18a|228421|kinesin family member 18A	AK041469|Kif18a|228421|kinesin family member 18A	AK044795|Kif18a|228421|kinesin family member 18A	AK164649|Kif18a|228421|kinesin family member 18A	AK036722|Kif18a|228421|kinesin family member 18A	AK164114|Kif18a|228421|kinesin family member 18A
mm9_v1_chr7_-_91838299_91838364	0.031987	NANOG.p2	BC010683|Zfand6|65098|zinc finger, AN1-type domain 6
mm9_v1_chr15_+_78860043_78860112	0.0316668	NANOG.p2	AK195119|H1f0|14958|H1 histone family, member 0
mm9_v1_chr18_-_12978106_12978267	0.0312458	NANOG.p2	BC057194|Osbpl1a|64291|oxysterol binding protein-like 1A	AF394063|Osbpl1a|64291|oxysterol binding protein-like 1A	AK133806|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr13_+_49639847_49640001	0.0310082	NANOG.p2	AK014504|Aspn|66695|asporin	AK021386|Aspn|66695|asporin	AK085920|Aspn|66695|asporin	BC034888|Aspn|66695|asporin	BC145904|Aspn|66695|asporin	BC145930|Aspn|66695|asporin
mm9_v1_chr3_+_144260300_144260351	0.0308775	NANOG.p2	AK205282|Sep15|93684|selenoprotein	AK213933|Sep15|93684|selenoprotein	AK218207|Sep15|93684|selenoprotein
mm9_v1_chr5_+_31216131_31216188	0.0305941	NANOG.p2	AK138020|Emilin1|100952|elastin microfibril interfacer 1	BC005481|Emilin1|100952|elastin microfibril interfacer 1	NM_133918|Emilin1|100952|elastin microfibril interfacer 1	AK029337|Emilin1|100952|elastin microfibril interfacer 1
mm9_v1_chr1_+_173085648_173085681	0.0298942	NANOG.p2	AK157960|Mpz|17528|myelin protein zero	BC139139|Mpz|17528|myelin protein zero	BC141226|Mpz|17528|myelin protein zero
mm9_v1_chr17_+_13208071_13208135	0.0281396	NANOG.p2	AK206580|Sod2|20656|superoxide dismutase 2, mitochondrial
mm9_v1_chr5_-_77543903_77543908	0.0280028	NANOG.p2	AK004798|Hopx|74318|HOP homeobox	AK009007|Hopx|74318|HOP homeobox
mm9_v1_chr17_+_34400152_34400289	0.0278772	NANOG.p2	NM_207105|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK077436|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC008168|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK170370|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171211|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK155573|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171281|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK172409|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK156899|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171005|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171290|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AK171298|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC010322|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	BC057998|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M15848|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF065913|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF119251|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF119252|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AY452202|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13537|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13538|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13539|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13540|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M66213|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	AF065912|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1	M13541|H2-Ab1|14961|histocompatibility 2, class II antigen A, beta 1
mm9_v1_chr7_+_130267398_130267398	0.0278589	NANOG.p2	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr12_+_91570569_91570694	0.0269402	NANOG.p2	AJ006804|Nrxn3|18191|neurexin III
mm9_v1_chr11_-_101755622_101755677	0.0257578	NANOG.p2	Z15103|Meox1|17285|mesenchyme homeobox 1	BC011082|Meox1|17285|mesenchyme homeobox 1	NM_010791|Meox1|17285|mesenchyme homeobox 1	AK052370|Meox1|17285|mesenchyme homeobox 1
mm9_v1_chrX_+_156146532_156146595	0.0247472	NANOG.p2	AK030839|Sh3kbp1|58194|SH3-domain kinase binding protein 1	NM_021389|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK004636|Sh3kbp1|58194|SH3-domain kinase binding protein 1	AK020782|Sh3kbp1|58194|SH3-domain kinase binding protein 1	BC052863|Sh3kbp1|58194|SH3-domain kinase binding protein 1
mm9_v1_chr4_-_41586992_41587010	0.0237018	NANOG.p2	BC021944|Enho|69638|energy homeostasis associated
mm9_v1_chr17_-_56144975_56145021	0.0232239	NANOG.p2	BC026642|Stap2|106766|signal transducing adaptor family member 2	NM_145934|Stap2|106766|signal transducing adaptor family member 2	AK050172|Stap2|106766|signal transducing adaptor family member 2	AK050131|Stap2|106766|signal transducing adaptor family member 2
mm9_v1_chr18_-_81183260_81183316	0.0231648	NANOG.p2	BC072631|Sall3|20689|sal-like 3 (Drosophila)	NM_178280|Sall3|20689|sal-like 3 (Drosophila)
mm9_v1_chr14_-_21299037_21299092	0.0230778	NANOG.p2	L13129|Anxa7|11750|annexin A7
mm9_v1_chr14_-_73762324_73762328	0.0224825	NANOG.p2	AK010248|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr18_+_37514924_37514931	0.0222422	NANOG.p2	AY013790|Pcdhb8|93879|protocadherin beta 8	BC116268|Pcdhb8|93879|protocadherin beta 8	BC127160|Pcdhb8|93879|protocadherin beta 8	NM_053133|Pcdhb8|93879|protocadherin beta 8	BC116269|Pcdhb8|93879|protocadherin beta 8
mm9_v1_chr8_-_87542451_87542752	0.021875	NANOG.p2	AK212827|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK183718|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK193379|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK180403|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK205686|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	AK216431|Asna1|56495|arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
mm9_v1_chr1_+_51345952_51345993	0.0216451	NANOG.p2	AK035324|Sdpr|20324|serum deprivation response	BC027005|Sdpr|20324|serum deprivation response	NM_138741|Sdpr|20324|serum deprivation response	AK132324|Sdpr|20324|serum deprivation response
mm9_v1_chr16_-_11220854_11220973	0.0215261	NANOG.p2	AK218484|Gspt1|14852|G1 to S phase transition 1
mm9_v1_chr15_-_44259348_44259361	0.0206254	NANOG.p2	
mm9_v1_chr19_-_37250472_37250552	0.0205951	NANOG.p2	AK147243|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr5_-_122907002_122907003	0.0203895	NANOG.p2	AK134659|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr15_-_103278889_103278900	0.019614	NANOG.p2	BC048502|BC048502|223927|cDNA sequence BC048502	NM_177631|BC048502|223927|cDNA sequence BC048502	AK131692|BC048502|223927|cDNA sequence BC048502
mm9_v1_chr14_+_117324651_117324783	0.0191078	NANOG.p2	AF105268|Gpc6|23888|glypican 6	AK149312|Gpc6|23888|glypican 6	AK132531|Gpc6|23888|glypican 6
mm9_v1_chr5_-_100391613_100391631	0.0190952	NANOG.p2	AK012230|Hnrnpd|11991|heterogeneous nuclear ribonucleoprotein D
mm9_v1_chr17_+_17539635_17539669	0.0188674	NANOG.p2	BC049574|Lix1|66643|limb expression 1 homolog (chicken)	NM_025681|Lix1|66643|limb expression 1 homolog (chicken)
mm9_v1_chr6_+_128995918_128995965	0.0183863	NANOG.p2	AK041601|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	NM_153094|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK154278|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107177|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC107178|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127141|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	BC127142|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AK170023|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	AY029597|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F	DQ237931|Klrb1f|232408|killer cell lectin-like receptor subfamily B member 1F
mm9_v1_chr8_-_87956665_87956752	0.0173967	NANOG.p2	BC050139|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK169408|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	BC027027|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK017512|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	AK014959|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene	NM_025722|4921524J17Rik|66714|RIKEN cDNA 4921524J17 gene
mm9_v1_chr18_+_61747381_61747495	0.0172282	NANOG.p2	AK217508|Csnk1a1|93687|casein kinase 1, alpha 1	AK218260|Csnk1a1|93687|casein kinase 1, alpha 1	AK211333|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr1_+_174051459_174051484	0.0170056	NANOG.p2	AK189379|Copa|12847|coatomer protein complex subunit alpha	AK191029|Copa|12847|coatomer protein complex subunit alpha	AK193412|Copa|12847|coatomer protein complex subunit alpha	AK199738|Copa|12847|coatomer protein complex subunit alpha	AK194620|Copa|12847|coatomer protein complex subunit alpha
mm9_v1_chr14_+_99498642_99498692	0.0167184	NANOG.p2	AK017107|Pibf1|52023|progesterone immunomodulatory binding factor 1	NM_029320|Pibf1|52023|progesterone immunomodulatory binding factor 1	NM_029454|Pibf1|52023|progesterone immunomodulatory binding factor 1
mm9_v1_chr2_+_32143769_32143812	0.0166825	NANOG.p2	AK077516|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_001080968|Golga2|99412|golgi autoantigen, golgin subfamily a, 2	NM_133852|Golga2|99412|golgi autoantigen, golgin subfamily a, 2
mm9_v1_chr3_+_105261699_105261733	0.0163751	NANOG.p2	BC141097|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	BC141098|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107781|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	AF107782|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3	NM_019931|Kcnd3|56543|potassium voltage-gated channel, Shal-related family, member 3
mm9_v1_chr2_-_73323746_73323842	0.0163218	NANOG.p2	AK031046|Wipf1|215280|WAS/WASL interacting protein family, member 1
mm9_v1_chrX_-_7182450_7182545	0.0151146	NANOG.p2	BC011195|Ccdc22|54638|coiled-coil domain containing 22	AK010536|Ccdc22|54638|coiled-coil domain containing 22	AF229637|Ccdc22|54638|coiled-coil domain containing 22	AK039573|Ccdc22|54638|coiled-coil domain containing 22	NM_138603|Ccdc22|54638|coiled-coil domain containing 22
mm9_v1_chr9_+_111277323_111277357	0.0149621	NANOG.p2	BC086653|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr12_+_82046496_82046547	0.0144262	NANOG.p2	AK002267|Srsf5|20384|serine/arginine-rich splicing factor 5	AK005552|Srsf5|20384|serine/arginine-rich splicing factor 5	AK007729|Srsf5|20384|serine/arginine-rich splicing factor 5	AK142009|Srsf5|20384|serine/arginine-rich splicing factor 5	AK146624|Srsf5|20384|serine/arginine-rich splicing factor 5	AK078065|Srsf5|20384|serine/arginine-rich splicing factor 5	BC082593|Srsf5|20384|serine/arginine-rich splicing factor 5	BC085267|Srsf5|20384|serine/arginine-rich splicing factor 5	BC038624|Srsf5|20384|serine/arginine-rich splicing factor 5
mm9_v1_chr5_-_17341534_17341556	0.0140713	NANOG.p2	L23108|Cd36|12491|CD36 antigen	AK151355|Cd36|12491|CD36 antigen
mm9_v1_chr14_-_32594734_32594785	0.0140689	NANOG.p2	AK158845|3110068a07rik|73207|RIKEN cDNA 3110068A07 gene
mm9_v1_chr9_+_103966032_103966080	0.0135868	NANOG.p2	AK077531|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	NM_175324|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	AK145561|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	AK128998|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	AK145834|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11	BC045199|Acad11|102632|acyl-Coenzyme A dehydrogenase family, member 11
mm9_v1_chrX_-_73119905_73119926	0.0128928	NANOG.p2	NM_145629|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr19_+_56623108_56623165	0.0127325	NANOG.p2	AK004564|Nhlrc2|66866|NHL repeat containing 2	AK002650|Nhlrc2|66866|NHL repeat containing 2
mm9_v1_chr15_-_5058532_5058532	0.0117776	NANOG.p2	NM_001163138|Card6|239319|caspase recruitment domain family, member 6
mm9_v1_chr2_+_34631124_34631274	0.0117256	NANOG.p2	M30779|Hspa5|14828|heat shock protein 5	M19351|Hspa5|14828|heat shock protein 5	AK198632|Hspa5|14828|heat shock protein 5	AK215158|Hspa5|14828|heat shock protein 5
mm9_v1_chr14_-_66696533_66696571	0.0113463	NANOG.p2	AK161261|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK161266|Adam2|11495|a disintegrin and metallopeptidase domain 2	U16242|Adam2|11495|a disintegrin and metallopeptidase domain 2	AK016550|Adam2|11495|a disintegrin and metallopeptidase domain 2	NM_009618|Adam2|11495|a disintegrin and metallopeptidase domain 2	U38806|Adam2|11495|a disintegrin and metallopeptidase domain 2
mm9_v1_chr11_+_61818881_61818910	0.0111848	NANOG.p2	
mm9_v1_chr6_-_119913623_119913750	0.0103923	NANOG.p2	BC146009|Wnk1|232341|WNK lysine deficient protein kinase 1	BC146011|Wnk1|232341|WNK lysine deficient protein kinase 1
mm9_v1_chr17_+_3482314_3482460	0.00973717	NANOG.p2	AK158489|Tiam2|24001|T-cell lymphoma invasion and metastasis 2
mm9_v1_chr2_-_84490666_84490763	0.00967345	NANOG.p2	NM_001085453|Ctnnd1|12388|catenin (cadherin associated protein), delta 1	BC046589|Ctnnd1|12388|catenin (cadherin associated protein), delta 1
mm9_v1_chr13_-_38694739_38694840	0.00923633	NANOG.p2	
mm9_v1_chr6_-_55631039_55631067	0.00876123	NANOG.p2	AK144303|Neurod6|11922|neurogenic differentiation 6	BC087831|Neurod6|11922|neurogenic differentiation 6	U29086|Neurod6|11922|neurogenic differentiation 6
mm9_v1_chr12_+_75028976_75029036	0.00777657	NANOG.p2	AK076395|Hif1a|15251|hypoxia inducible factor 1, alpha subunit
mm9_v1_chr10_+_127521417_127521506	0.0066764	NANOG.p2	AK179339|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK205339|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	AK203332|Atp5b|11947|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm9_v1_chr11_-_116712559_116712636	0.00618711	NANOG.p2	AF250133|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr2_-_62411970_62412077	0.00589832	NANOG.p2	BC019190|Fap|14089|fibroblast activation protein	AK051959|Fap|14089|fibroblast activation protein	NM_007986|Fap|14089|fibroblast activation protein	Y10007|Fap|14089|fibroblast activation protein
mm9_v1_chr18_+_78012506_78012506	0.00588986	NANOG.p2	NM_007505|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr5_+_58109278_58109341	0.00586344	NANOG.p2	AK140356|Pcdh7|54216|protocadherin 7	AB006758|Pcdh7|54216|protocadherin 7
mm9_v1_chr6_+_60894310_60894310	0.00542909	NANOG.p2	NM_001163507|Mmrn1|70945|multimerin 1	NM_027613|Mmrn1|70945|multimerin 1
mm9_v1_chr1_+_189821727_189821874	0.00501642	NANOG.p2	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr18_-_84255781_84255953	0.00420187	NANOG.p2	BC040215|Tshz1|110796|teashirt zinc finger family member 1	AK220545|Tshz1|110796|teashirt zinc finger family member 1	AK152140|Tshz1|110796|teashirt zinc finger family member 1	NM_001081300|Tshz1|110796|teashirt zinc finger family member 1
mm9_v1_chr5_-_117565990_117566025	0.00414945	NANOG.p2	NM_001122666|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	NM_178622|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)
mm9_v1_chrX_+_104344953_104344955	0.003821	NANOG.p2	NM_175442|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene	AK041740|A630033H20Rik|213438|RIKEN cDNA A630033H20 gene
mm9_v1_chr11_-_102080155_102080242	0.00360093	NANOG.p2	AK156008|Hdac5|15184|histone deacetylase 5	AK157159|Hdac5|15184|histone deacetylase 5
mm9_v1_chr7_+_108812146_108812327	0.00351031	NANOG.p2	AK006072|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK138593|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK159314|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK154577|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK049768|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK028101|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK141383|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	U09874|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	BC048175|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	NM_009191|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK032421|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)	AK145641|Clpb|20480|ClpB caseinolytic peptidase B homolog (E. coli)
mm9_v1_chr15_-_94408654_94408675	0.00311325	NANOG.p2	
mm9_v1_chr4_+_109650629_109650657	0.00193231	NANOG.p2	NM_172296|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2	AK080774|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2	AY145837|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2
mm9_v1_chr14_-_103482076_103482219	0.00116732	NANOG.p2	AK083561|Fbxl3|50789|F-box and leucine-rich repeat protein 3
mm9_v1_chr11_-_116711807_116712035	0.00115906	NANOG.p2	AK211203|Srsf2|20382|serine/arginine-rich splicing factor 2	AK207032|Srsf2|20382|serine/arginine-rich splicing factor 2	AK212169|Srsf2|20382|serine/arginine-rich splicing factor 2	AK220014|Srsf2|20382|serine/arginine-rich splicing factor 2	AF250134|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr19_-_14671832_14671910	0.000846262	NANOG.p2	AF229633|Tle4|21888|transducin-like enhancer of split 4, homolog of Drosophila E(spl)
mm9_v1_chr6_-_51413182_51413233	0.000239394	NANOG.p2	AK049735|Hnrnpa2b1|53379|heterogeneous nuclear ribonucleoprotein A2/B1
mm9_v1_chr11_+_95343299_95343327	8.92545e-06	NANOG.p2	
