mm9_v1_chr1_+_154802144_154802177	8.69342	NFIX.p2	AK129155|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr11_-_33743416_33743626	8.03087	NFIX.p2	AY647242|Kcnip1|70357|Kv channel-interacting protein 1	AY171234|Kcnip1|70357|Kv channel-interacting protein 1	BC034241|Kcnip1|70357|Kv channel-interacting protein 1	DQ148493|Kcnip1|70357|Kv channel-interacting protein 1	AK013657|Kcnip1|70357|Kv channel-interacting protein 1	AK014313|Kcnip1|70357|Kv channel-interacting protein 1	AK046398|Kcnip1|70357|Kv channel-interacting protein 1	AK045948|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190885|Kcnip1|70357|Kv channel-interacting protein 1	NM_027398|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr10_-_79602040_79602141	7.89747	NFIX.p2	AK137009|Dos|100503659|downstream of Stk11
mm9_v1_chr2_+_106533281_106533425	6.81381	NFIX.p2	AK165186|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr6_+_105627738_105627848	6.80348	NFIX.p2	NM_001109749|Cntn4|269784|contactin 4	NM_173004|Cntn4|269784|contactin 4	AK036262|Cntn4|269784|contactin 4	BC115766|Cntn4|269784|contactin 4
mm9_v1_chr18_+_38115192_38115292	6.69691	NFIX.p2	NM_153793|Rell2|225392|RELT-like 2	AK044097|Rell2|225392|RELT-like 2	BC038500|Rell2|225392|RELT-like 2
mm9_v1_chr13_-_34222209_34222227	6.12797	NFIX.p2	BC138935|Tubb2b|73710|tubulin, beta 2B	BC138936|Tubb2b|73710|tubulin, beta 2B	AK168908|Tubb2b|73710|tubulin, beta 2B	AK010786|Tubb2b|73710|tubulin, beta 2B	NM_023716|Tubb2b|73710|tubulin, beta 2B
mm9_v1_chr17_-_25974021_25974145	5.91551	NFIX.p2	BC021549|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	NM_144816|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	AK140428|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)
mm9_v1_chr1_+_154802091_154802137	5.51784	NFIX.p2	AK084041|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	AK083532|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr7_-_135561641_135561759	5.46429	NFIX.p2	BC109178|Rgs10|67865|regulator of G-protein signalling 10	AK152143|Rgs10|67865|regulator of G-protein signalling 10	BC109179|Rgs10|67865|regulator of G-protein signalling 10	AK088009|Rgs10|67865|regulator of G-protein signalling 10	AK009283|Rgs10|67865|regulator of G-protein signalling 10	AK017314|Rgs10|67865|regulator of G-protein signalling 10	AK021202|Rgs10|67865|regulator of G-protein signalling 10	NM_026418|Rgs10|67865|regulator of G-protein signalling 10	AK009686|Rgs10|67865|regulator of G-protein signalling 10
mm9_v1_chr7_-_31836457_31836500	5.30077	NFIX.p2	NM_022007|Fxyd7|57780|FXYD domain-containing ion transport regulator 7	AK004113|Fxyd7|57780|FXYD domain-containing ion transport regulator 7	BC048737|Fxyd7|57780|FXYD domain-containing ion transport regulator 7	BC061101|Fxyd7|57780|FXYD domain-containing ion transport regulator 7
mm9_v1_chrX_+_20425667_20425723	5.14075	NFIX.p2	NM_001159645|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	NM_009703|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK169757|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK133797|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK163567|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK039044|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK085823|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK135358|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	BC004757|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog
mm9_v1_chr4_-_45543623_45543714	4.84943	NFIX.p2	NM_001033306|Shb|230126|src homology 2 domain-containing transforming protein B
mm9_v1_chr16_-_30550622_30550663	4.51668	NFIX.p2	AK031524|Tmem44|224090|transmembrane protein 44	AK045675|Tmem44|224090|transmembrane protein 44	AK048655|Tmem44|224090|transmembrane protein 44	NM_172614|Tmem44|224090|transmembrane protein 44
mm9_v1_chr10_-_80945445_80945464	4.19054	NFIX.p2	NM_176954|Celf5|319586|CUGBP, Elav-like family member 5
mm9_v1_chr6_+_54631644_54631765	4.15544	NFIX.p2	BC042507|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	BC052467|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019120|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK019128|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	AK043452|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene	NM_026629|2410066E13Rik|68235|RIKEN cDNA 2410066E13 gene
mm9_v1_chr5_+_117807290_117807469	3.9726	NFIX.p2	AK080976|Wsb2|59043|WD repeat and SOCS box-containing 2	BC055100|Wsb2|59043|WD repeat and SOCS box-containing 2	NM_021539|Wsb2|59043|WD repeat and SOCS box-containing 2	AK157999|Wsb2|59043|WD repeat and SOCS box-containing 2	AF072881|Wsb2|59043|WD repeat and SOCS box-containing 2	AF033188|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr10_+_105011586_105011626	3.94808	NFIX.p2	AK034146|9330159K06|327812|hypothetical protein 9330159K06
mm9_v1_chr18_-_33623287_33623340	3.81129	NFIX.p2	NM_053078|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr1_-_175297778_175297829	3.79516	NFIX.p2	AK036352|Cadm3|94332|cell adhesion molecule 3	AK053077|Cadm3|94332|cell adhesion molecule 3	AK038917|Cadm3|94332|cell adhesion molecule 3	NM_053199|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr18_-_33623273_33623276	3.76702	NFIX.p2	AK051015|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr16_-_22439642_22439745	3.74055	NFIX.p2	BC034680|Etv5|104156|ets variant gene 5	NM_023794|Etv5|104156|ets variant gene 5	AK031452|Etv5|104156|ets variant gene 5	AK168881|Etv5|104156|ets variant gene 5	AK049234|Etv5|104156|ets variant gene 5	AK164091|Etv5|104156|ets variant gene 5	AK018368|Etv5|104156|ets variant gene 5
mm9_v1_chr11_+_104092809_104092902	3.51692	NFIX.p2	BC014748|Mapt|17762|microtubule-associated protein tau	U12914|Mapt|17762|microtubule-associated protein tau	U12915|Mapt|17762|microtubule-associated protein tau	U12916|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr9_-_53418394_53418489	3.4913	NFIX.p2	AK146241|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK032097|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK075593|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024763|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	BC024429|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AJ510150|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK169771|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK081715|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	NM_144784|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1	AK163402|Acat1|110446|acetyl-Coenzyme A acetyltransferase 1
mm9_v1_chr19_-_17912073_17912162	3.30211	NFIX.p2	AK086210|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	AK087337|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	AK143998|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	NM_001163144|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5	NM_001190483|Pcsk5|18552|proprotein convertase subtilisin/kexin type 5
mm9_v1_chr11_+_104092793_104092806	3.27022	NFIX.p2	AK147636|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr10_+_80639388_80639392	3.11517	NFIX.p2	AK032997|Eef2|13629|eukaryotic translation elongation factor 2	AK040474|Eef2|13629|eukaryotic translation elongation factor 2	AK077866|Eef2|13629|eukaryotic translation elongation factor 2	AK087985|Eef2|13629|eukaryotic translation elongation factor 2	AK128976|Eef2|13629|eukaryotic translation elongation factor 2	AK134195|Eef2|13629|eukaryotic translation elongation factor 2	AK144874|Eef2|13629|eukaryotic translation elongation factor 2	AK145509|Eef2|13629|eukaryotic translation elongation factor 2	AK145545|Eef2|13629|eukaryotic translation elongation factor 2	AK146508|Eef2|13629|eukaryotic translation elongation factor 2	AK149659|Eef2|13629|eukaryotic translation elongation factor 2	AK150136|Eef2|13629|eukaryotic translation elongation factor 2	AK150902|Eef2|13629|eukaryotic translation elongation factor 2	AK151487|Eef2|13629|eukaryotic translation elongation factor 2	AK151945|Eef2|13629|eukaryotic translation elongation factor 2	AK152146|Eef2|13629|eukaryotic translation elongation factor 2	AK152447|Eef2|13629|eukaryotic translation elongation factor 2	AK152587|Eef2|13629|eukaryotic translation elongation factor 2	AK152826|Eef2|13629|eukaryotic translation elongation factor 2	AK153275|Eef2|13629|eukaryotic translation elongation factor 2	AK153936|Eef2|13629|eukaryotic translation elongation factor 2	AK155325|Eef2|13629|eukaryotic translation elongation factor 2	AK159155|Eef2|13629|eukaryotic translation elongation factor 2	AK159421|Eef2|13629|eukaryotic translation elongation factor 2	AK159514|Eef2|13629|eukaryotic translation elongation factor 2	AK159806|Eef2|13629|eukaryotic translation elongation factor 2	AK159829|Eef2|13629|eukaryotic translation elongation factor 2	AK163063|Eef2|13629|eukaryotic translation elongation factor 2	AK166212|Eef2|13629|eukaryotic translation elongation factor 2	AK166595|Eef2|13629|eukaryotic translation elongation factor 2	AK166596|Eef2|13629|eukaryotic translation elongation factor 2	AK166719|Eef2|13629|eukaryotic translation elongation factor 2	AK166747|Eef2|13629|eukaryotic translation elongation factor 2	AK166758|Eef2|13629|eukaryotic translation elongation factor 2	AK166788|Eef2|13629|eukaryotic translation elongation factor 2	AK166815|Eef2|13629|eukaryotic translation elongation factor 2	AK166829|Eef2|13629|eukaryotic translation elongation factor 2	AK166968|Eef2|13629|eukaryotic translation elongation factor 2	AK167081|Eef2|13629|eukaryotic translation elongation factor 2	AK167093|Eef2|13629|eukaryotic translation elongation factor 2	AK167109|Eef2|13629|eukaryotic translation elongation factor 2	AK167115|Eef2|13629|eukaryotic translation elongation factor 2	AK167199|Eef2|13629|eukaryotic translation elongation factor 2	AK167221|Eef2|13629|eukaryotic translation elongation factor 2	AK167230|Eef2|13629|eukaryotic translation elongation factor 2	AK168527|Eef2|13629|eukaryotic translation elongation factor 2	AK168615|Eef2|13629|eukaryotic translation elongation factor 2	AK168638|Eef2|13629|eukaryotic translation elongation factor 2	AK168659|Eef2|13629|eukaryotic translation elongation factor 2	AK168794|Eef2|13629|eukaryotic translation elongation factor 2	AK168827|Eef2|13629|eukaryotic translation elongation factor 2	AK166851|Eef2|13629|eukaryotic translation elongation factor 2	AK167208|Eef2|13629|eukaryotic translation elongation factor 2	AK167281|Eef2|13629|eukaryotic translation elongation factor 2	AK166751|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr19_+_10057131_10057449	3.10799	NFIX.p2	AK147082|Fth1|14319|ferritin heavy chain 1	AK150679|Fth1|14319|ferritin heavy chain 1	AK153195|Fth1|14319|ferritin heavy chain 1	AK153199|Fth1|14319|ferritin heavy chain 1	AK151241|Fth1|14319|ferritin heavy chain 1	AK152542|Fth1|14319|ferritin heavy chain 1	NM_010239|Fth1|14319|ferritin heavy chain 1	AK027998|Fth1|14319|ferritin heavy chain 1	AK088935|Fth1|14319|ferritin heavy chain 1	AK139622|Fth1|14319|ferritin heavy chain 1	AK150262|Fth1|14319|ferritin heavy chain 1	AK150508|Fth1|14319|ferritin heavy chain 1	AK150628|Fth1|14319|ferritin heavy chain 1	AK150693|Fth1|14319|ferritin heavy chain 1	AK151192|Fth1|14319|ferritin heavy chain 1	AK151609|Fth1|14319|ferritin heavy chain 1	AK151675|Fth1|14319|ferritin heavy chain 1	AK152071|Fth1|14319|ferritin heavy chain 1	AK153017|Fth1|14319|ferritin heavy chain 1	AK168601|Fth1|14319|ferritin heavy chain 1	AK169004|Fth1|14319|ferritin heavy chain 1	AK159243|Fth1|14319|ferritin heavy chain 1	AK151399|Fth1|14319|ferritin heavy chain 1	BC011096|Fth1|14319|ferritin heavy chain 1	BC012314|Fth1|14319|ferritin heavy chain 1	J03941|Fth1|14319|ferritin heavy chain 1	M24509|Fth1|14319|ferritin heavy chain 1	X12812|Fth1|14319|ferritin heavy chain 1
mm9_v1_chr6_-_59376283_59376287	2.93762	NFIX.p2	AK050148|Gprin3|243385|GPRIN family member 3	NM_183183|Gprin3|243385|GPRIN family member 3	AK173336|Gprin3|243385|GPRIN family member 3
mm9_v1_chr7_+_139158135_139158148	2.75367	NFIX.p2	AK036100|Gpr26|233919|G protein-coupled receptor 26	NM_173410|Gpr26|233919|G protein-coupled receptor 26
mm9_v1_chr11_+_104092789_104092792	2.71935	NFIX.p2	AK038797|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr11_+_31770872_31770914	2.59235	NFIX.p2	AK154289|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4	AK089951|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4	AK162101|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4
mm9_v1_chr3_+_36762025_36762077	2.51306	NFIX.p2	AK172264|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	NM_172679|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK030086|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK041411|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK220265|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene
mm9_v1_chr6_-_56312170_56312512	2.49514	NFIX.p2	AK082497|Pde1c|18575|phosphodiesterase 1C	BC032277|Pde1c|18575|phosphodiesterase 1C	AK139923|Pde1c|18575|phosphodiesterase 1C	AK017183|Pde1c|18575|phosphodiesterase 1C	AK082180|Pde1c|18575|phosphodiesterase 1C	AK030423|Pde1c|18575|phosphodiesterase 1C	NM_001025568|Pde1c|18575|phosphodiesterase 1C	NM_001159952|Pde1c|18575|phosphodiesterase 1C	NM_001159953|Pde1c|18575|phosphodiesterase 1C	L76946|Pde1c|18575|phosphodiesterase 1C	NM_011054|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr16_-_85173978_85173998	2.42158	NFIX.p2	AK147543|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr12_+_110783593_110783620	2.41555	NFIX.p2	AK018105|Meg3|17263|maternally expressed 3	AK140201|Meg3|17263|maternally expressed 3
mm9_v1_chr10_-_80945379_80945426	2.40031	NFIX.p2	AK132321|Celf5|319586|CUGBP, Elav-like family member 5
mm9_v1_chr16_+_49855691_49855777	2.33074	NFIX.p2	NM_010581|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	Z25524|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr10_-_105011265_105011266	2.32169	NFIX.p2	BC138362|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	BC138363|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr19_-_4283047_4283120	2.30356	NFIX.p2	BC058982|Ankrd13d|68423|ankyrin repeat domain 13 family, member D
mm9_v1_chrX_+_117403867_117404011	2.27501	NFIX.p2	AJ564976|Pcdh11x|245578|protocadherin 11 X-linked	AK031276|Pcdh11x|245578|protocadherin 11 X-linked	AK032315|Pcdh11x|245578|protocadherin 11 X-linked	AK039071|Pcdh11x|245578|protocadherin 11 X-linked	NM_001081385|Pcdh11x|245578|protocadherin 11 X-linked	BC126930|Pcdh11x|245578|protocadherin 11 X-linked
mm9_v1_chr7_-_148008029_148008088	2.26671	NFIX.p2	BC068250|Zfp941|407812|zinc finger protein 941	BC066028|Zfp941|407812|zinc finger protein 941	AK045889|Zfp941|407812|zinc finger protein 941	AK141045|Zfp941|407812|zinc finger protein 941	NM_001001180|Zfp941|407812|zinc finger protein 941
mm9_v1_chr7_-_147340532_147340650	2.23828	NFIX.p2	BC056484|Sprn|212518|shadow of prion protein	NM_183147|Sprn|212518|shadow of prion protein	AK049995|Sprn|212518|shadow of prion protein
mm9_v1_chr1_+_94728419_94728433	2.16661	NFIX.p2	BC062902|Gpc1|14733|glypican 1
mm9_v1_chr9_-_99336923_99337150	2.15489	NFIX.p2	AK050469|Mras|17532|muscle and microspikes RAS	AB004879|Mras|17532|muscle and microspikes RAS	NM_008624|Mras|17532|muscle and microspikes RAS
mm9_v1_chr5_-_92471603_92471743	2.15031	NFIX.p2	AK145688|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK139820|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK030598|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029067|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm9_v1_chr10_-_80945428_80945439	2.02776	NFIX.p2	BC079845|Celf5|319586|CUGBP, Elav-like family member 5
mm9_v1_chr18_+_38578583_38578694	2.01724	NFIX.p2	AF220209|Ndfip1|65113|Nedd4 family interacting protein 1	AK050560|Ndfip1|65113|Nedd4 family interacting protein 1	BC026372|Ndfip1|65113|Nedd4 family interacting protein 1	NM_022996|Ndfip1|65113|Nedd4 family interacting protein 1	BC020359|Ndfip1|65113|Nedd4 family interacting protein 1
mm9_v1_chr11_+_104092749_104092776	1.98445	NFIX.p2	M18775|Mapt|17762|microtubule-associated protein tau	M18776|Mapt|17762|microtubule-associated protein tau	NM_001038609|Mapt|17762|microtubule-associated protein tau	NM_010838|Mapt|17762|microtubule-associated protein tau	AK078167|Mapt|17762|microtubule-associated protein tau
mm9_v1_chr5_-_123582394_123582469	1.92072	NFIX.p2	AK038837|Rhof|23912|ras homolog gene family, member f	AK172212|Rhof|23912|ras homolog gene family, member f	BC096597|Rhof|23912|ras homolog gene family, member f	BC132355|Rhof|23912|ras homolog gene family, member f	BC132357|Rhof|23912|ras homolog gene family, member f
mm9_v1_chr10_+_80639393_80639464	1.91804	NFIX.p2	AK146947|Eef2|13629|eukaryotic translation elongation factor 2	AK169013|Eef2|13629|eukaryotic translation elongation factor 2	AK028938|Eef2|13629|eukaryotic translation elongation factor 2	AK168874|Eef2|13629|eukaryotic translation elongation factor 2	BC007152|Eef2|13629|eukaryotic translation elongation factor 2	BC013263|Eef2|13629|eukaryotic translation elongation factor 2	AK200555|Eef2|13629|eukaryotic translation elongation factor 2	AK151812|Eef2|13629|eukaryotic translation elongation factor 2	AK185912|Eef2|13629|eukaryotic translation elongation factor 2	AK214133|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr5_+_139230946_139231095	1.90463	NFIX.p2	NM_030565|Fam20c|80752|family with sequence similarity 20, member C	AK149780|Fam20c|80752|family with sequence similarity 20, member C	AK154810|Fam20c|80752|family with sequence similarity 20, member C	AY778962|Fam20c|80752|family with sequence similarity 20, member C	BC025826|Fam20c|80752|family with sequence similarity 20, member C	BC025814|Fam20c|80752|family with sequence similarity 20, member C
mm9_v1_chr2_-_151458281_151458296	1.89796	NFIX.p2	BC072567|Snph|241727|syntaphilin
mm9_v1_chr12_+_110783786_110783839	1.86664	NFIX.p2	BC048191|Meg3|17263|maternally expressed 3
mm9_v1_chr12_-_80273320_80273473	1.82986	NFIX.p2	AF035821|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AF035208|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC009810|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC080204|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	BC002290|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK160624|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	AK002289|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog	NM_016800|Vti1b|53612|vesicle transport through interaction with t-SNAREs 1B homolog
mm9_v1_chr13_-_59658585_59658681	1.80522	NFIX.p2	BC060633|Agtpbp1|67269|ATP/GTP binding protein 1	AK133215|Agtpbp1|67269|ATP/GTP binding protein 1	AF219141|Agtpbp1|67269|ATP/GTP binding protein 1	AK132695|Agtpbp1|67269|ATP/GTP binding protein 1	AK170046|Agtpbp1|67269|ATP/GTP binding protein 1	AK051467|Agtpbp1|67269|ATP/GTP binding protein 1	BC048468|Agtpbp1|67269|ATP/GTP binding protein 1	AK015394|Agtpbp1|67269|ATP/GTP binding protein 1	NM_001048008|Agtpbp1|67269|ATP/GTP binding protein 1	NM_023328|Agtpbp1|67269|ATP/GTP binding protein 1
mm9_v1_chrX_-_70905062_70905211	1.78072	NFIX.p2	AK134665|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AF181984|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	NM_012040|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr2_+_4322447_4322516	1.72138	NFIX.p2	AK082365|Frmd4a|209630|FERM domain containing 4A	AK043369|Frmd4a|209630|FERM domain containing 4A
mm9_v1_chr17_-_24607134_24607257	1.70617	NFIX.p2	AK014798|4833447I15Rik|74844|RIKEN cDNA 4833447I15 gene	AK077014|E4f1|13560|E4F transcription factor 1
mm9_v1_chr19_+_47253626_47253646	1.66783	NFIX.p2	AK010787|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr5_-_123582637_123582709	1.66658	NFIX.p2	NM_175092|Rhof|23912|ras homolog gene family, member f
mm9_v1_chr3_+_88425352_88425437	1.65463	NFIX.p2	AK167628|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK171223|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr6_-_115201866_115201882	1.65211	NFIX.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr4_-_115690263_115690388	1.64251	NFIX.p2	U82536|Faah|14073|fatty acid amide hydrolase	AK032079|Faah|14073|fatty acid amide hydrolase	BC006863|Faah|14073|fatty acid amide hydrolase	AK004985|Faah|14073|fatty acid amide hydrolase	AK080603|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr16_+_11066390_11066492	1.64209	NFIX.p2	NM_009223|Snn|20621|stannin	BC006961|Snn|20621|stannin	AK149685|Snn|20621|stannin	BC063027|Snn|20621|stannin	BC017685|Snn|20621|stannin
mm9_v1_chr4_-_136512727_136512761	1.5608	NFIX.p2	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr8_-_126039287_126039398	1.55902	NFIX.p2	BC046622|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK028187|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	AK163434|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170975|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_001170976|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1	NM_028146|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm9_v1_chr6_-_124807733_124807764	1.53772	NFIX.p2	AK140962|Leprel2|14789|leprecan-like 2
mm9_v1_chr16_-_85173944_85173969	1.52373	NFIX.p2	AK159245|App|11820|amyloid beta (A4) precursor protein	BC070409|App|11820|amyloid beta (A4) precursor protein	AK133639|App|11820|amyloid beta (A4) precursor protein	AK159352|App|11820|amyloid beta (A4) precursor protein	AK030583|App|11820|amyloid beta (A4) precursor protein	AK128971|App|11820|amyloid beta (A4) precursor protein	NM_001198823|App|11820|amyloid beta (A4) precursor protein	NM_001198824|App|11820|amyloid beta (A4) precursor protein	NM_001198825|App|11820|amyloid beta (A4) precursor protein	NM_001198826|App|11820|amyloid beta (A4) precursor protein	NM_007471|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr17_-_56279684_56279770	1.50886	NFIX.p2	AK139358|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	AK143229|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	NM_001130456|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm9_v1_chr2_-_26244834_26244836	1.47849	NFIX.p2	NM_001085407|Sdccag3|68112|serologically defined colon cancer antigen 3	NM_001085408|Sdccag3|68112|serologically defined colon cancer antigen 3	NM_026563|Sdccag3|68112|serologically defined colon cancer antigen 3
mm9_v1_chr9_+_56266415_56266485	1.44227	NFIX.p2	AK017716|Hmg20a|66867|high mobility group 20A	AK129010|Hmg20a|66867|high mobility group 20A	AK134213|Hmg20a|66867|high mobility group 20A
mm9_v1_chr10_+_75398588_75398659	1.42815	NFIX.p2	BC061190|Chchd10|103172|coiled-coil-helix-coiled-coil-helix domain containing 10	AK131581|Chchd10|103172|coiled-coil-helix-coiled-coil-helix domain containing 10	AK075746|Chchd10|103172|coiled-coil-helix-coiled-coil-helix domain containing 10
mm9_v1_chr9_-_40965718_40965879	1.41103	NFIX.p2	AK034450|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK151895|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK152013|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B	AK154576|Ubash3b|72828|ubiquitin associated and SH3 domain containing, B
mm9_v1_chr2_+_158492854_158492905	1.39439	NFIX.p2	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr6_+_126889979_126890004	1.38974	NFIX.p2	AK037095|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK045541|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	NM_138594|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK043521|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK137201|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK042976|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed	AK046707|D6Wsu163e|28040|DNA segment, Chr 6, Wayne State University 163, expressed
mm9_v1_chr7_-_134027930_134028177	1.38377	NFIX.p2	BC077714|Taok2|381921|TAO kinase 2	BC075676|Taok2|381921|TAO kinase 2
mm9_v1_chr10_-_105011439_105011534	1.37507	NFIX.p2	BC092226|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK052344|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK135552|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	NM_177368|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr17_+_24607576_24607746	1.36758	NFIX.p2	AK005906|Pgp|67078|phosphoglycolate phosphatase	AK013578|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr2_+_106533615_106533705	1.36542	NFIX.p2	AK161666|Mpped2|77015|metallophosphoesterase domain containing 2	NM_001143683|Mpped2|77015|metallophosphoesterase domain containing 2	BC020182|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr13_+_55565627_55565671	1.36425	NFIX.p2	NM_001030296|Prr7|432763|proline rich 7 (synaptic)	AK133129|Prr7|432763|proline rich 7 (synaptic)
mm9_v1_chr5_-_114541313_114541402	1.35946	NFIX.p2	BC059878|Svop|68666|SV2 related protein	AK047655|Svop|68666|SV2 related protein	AK053833|Svop|68666|SV2 related protein	AK160770|Svop|68666|SV2 related protein	AK047764|Svop|68666|SV2 related protein	AK082744|Svop|68666|SV2 related protein	NM_026805|Svop|68666|SV2 related protein
mm9_v1_chr5_-_143026961_143027030	1.32786	NFIX.p2	AK052964|Radil|231858|Ras association and DIL domains	AK038570|Radil|231858|Ras association and DIL domains	AK163852|Radil|231858|Ras association and DIL domains	AK154169|Radil|231858|Ras association and DIL domains	BC056483|Radil|231858|Ras association and DIL domains	AK173277|Radil|231858|Ras association and DIL domains	AK162917|Radil|231858|Ras association and DIL domains	NM_178702|Radil|231858|Ras association and DIL domains
mm9_v1_chr2_-_103637795_103637829	1.32269	NFIX.p2	NM_001111291|Caprin1|53872|cell cycle associated protein 1	NM_016739|Caprin1|53872|cell cycle associated protein 1
mm9_v1_chr13_-_93300744_93300828	1.3135	NFIX.p2	AK122241|Zfyve16|218441|zinc finger, FYVE domain containing 16	BC042669|Zfyve16|218441|zinc finger, FYVE domain containing 16	NM_173392|Zfyve16|218441|zinc finger, FYVE domain containing 16	AK170435|Zfyve16|218441|zinc finger, FYVE domain containing 16	AK045090|Zfyve16|218441|zinc finger, FYVE domain containing 16
mm9_v1_chr6_-_115201846_115201865	1.28634	NFIX.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr2_+_70400179_70400352	1.28317	NFIX.p2	AK054554|Gad1|14415|glutamic acid decarboxylase 1	NM_008077|Gad1|14415|glutamic acid decarboxylase 1	AK148497|Gad1|14415|glutamic acid decarboxylase 1	AK160868|Gad1|14415|glutamic acid decarboxylase 1	AK136801|Gad1|14415|glutamic acid decarboxylase 1	BC027059|Gad1|14415|glutamic acid decarboxylase 1	AF326547|Gad1|14415|glutamic acid decarboxylase 1	AF326548|Gad1|14415|glutamic acid decarboxylase 1	Z49976|Gad1|14415|glutamic acid decarboxylase 1
mm9_v1_chr1_-_63223287_63223307	1.27426	NFIX.p2	AK034597|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1
mm9_v1_chr10_-_109892899_109893037	1.27362	NFIX.p2	AK080592|Gm3877|100042510|predicted gene 3877	AK035945|Nav3|260315|neuron navigator 3
mm9_v1_chr13_-_69878721_69878801	1.2629	NFIX.p2	NM_001145162|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr11_+_31770920_31770944	1.25615	NFIX.p2	AK173229|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4
mm9_v1_chr1_-_175297624_175297771	1.24936	NFIX.p2	AY059393|Cadm3|94332|cell adhesion molecule 3	BC115417|Cadm3|94332|cell adhesion molecule 3	BC115418|Cadm3|94332|cell adhesion molecule 3	BC079837|Cadm3|94332|cell adhesion molecule 3	AF195662|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr19_-_24936327_24936331	1.23846	NFIX.p2	AK035507|Pgm5|226041|phosphoglucomutase 5	NM_175013|Pgm5|226041|phosphoglucomutase 5
mm9_v1_chr7_+_136400544_136400607	1.23603	NFIX.p2	AK081292|Ppapdc1a|381925|phosphatidic acid phosphatase type 2 domain containing 1A	BC120497|Ppapdc1a|381925|phosphatidic acid phosphatase type 2 domain containing 1A	BC144735|Ppapdc1a|381925|phosphatidic acid phosphatase type 2 domain containing 1A	NM_001080963|Ppapdc1a|381925|phosphatidic acid phosphatase type 2 domain containing 1A
mm9_v1_chr16_+_49855786_49855899	1.22797	NFIX.p2	AK151922|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	AB012693|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	BC012667|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr13_-_69138418_69138432	1.22045	NFIX.p2	AK132312|Adcy2|210044|adenylate cyclase 2	NM_153534|Adcy2|210044|adenylate cyclase 2
mm9_v1_chr1_+_66221851_66221903	1.19915	NFIX.p2	AK166380|Mtap2|17756|microtubule-associated protein 2	BC052446|Mtap2|17756|microtubule-associated protein 2	NM_001039934|Mtap2|17756|microtubule-associated protein 2	NM_008632|Mtap2|17756|microtubule-associated protein 2	BC150945|Mtap2|17756|microtubule-associated protein 2
mm9_v1_chr11_-_75268137_75268225	1.18222	NFIX.p2	NM_138950|Wdr81|192652|WD repeat domain 81
mm9_v1_chr12_-_4776037_4776072	1.17975	NFIX.p2	AK050447|A830093I24Rik|207921|RIKEN cDNA A830093I24 gene	AK044133|A830093I24Rik|207921|RIKEN cDNA A830093I24 gene	NM_175431|A830093I24Rik|207921|RIKEN cDNA A830093I24 gene
mm9_v1_chr4_+_57447340_57447346	1.15924	NFIX.p2	AK133666|Palm2|242481|paralemmin 2
mm9_v1_chr12_+_75065510_75065528	1.14908	NFIX.p2	AK152833|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1	AK138261|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1	NM_178392|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1
mm9_v1_chr9_-_121404750_121404785	1.14582	NFIX.p2	BC028487|Cck|12424|cholecystokinin	AK002677|Cck|12424|cholecystokinin
mm9_v1_chr1_+_94728217_94728298	1.1448	NFIX.p2	AK154899|Gpc1|14733|glypican 1	AF185613|Gpc1|14733|glypican 1	NM_016696|Gpc1|14733|glypican 1
mm9_v1_chr1_+_154802198_154802230	1.14392	NFIX.p2	BC089007|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2	NM_175460|Nmnat2|226518|nicotinamide nucleotide adenylyltransferase 2
mm9_v1_chr11_-_96805092_96805165	1.1427	NFIX.p2	AK154443|Pnpo|103711|pyridoxine 5'-phosphate oxidase
mm9_v1_chr3_-_107320881_107320937	1.11498	NFIX.p2	AK163113|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	AY155578|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17	NM_172271|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr8_-_41596638_41596711	1.10593	NFIX.p2	AK044535|Cnot7|18983|CCR4-NOT transcription complex, subunit 7	NM_011135|Cnot7|18983|CCR4-NOT transcription complex, subunit 7
mm9_v1_chr3_+_53959956_53960294	1.10291	NFIX.p2	AK084109|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK080670|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK084139|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	NM_016984|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	U50921|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	U50922|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	BC120729|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	BC131915|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK044265|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AF190646|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AF011543|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AF019663|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK049788|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4
mm9_v1_chr1_-_79855209_79855213	1.09715	NFIX.p2	AK045954|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK047856|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK051332|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK159687|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK160700|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK164270|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	X70296|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr2_+_163245523_163245600	1.09269	NFIX.p2	AK013849|2900093K20Rik|68037|RIKEN cDNA 2900093K20 gene	AK020931|2900093K20Rik|68037|RIKEN cDNA 2900093K20 gene
mm9_v1_chr7_-_139767997_139768034	1.09088	NFIX.p2	BC008119|Oat|18242|ornithine aminotransferase	AK146413|Oat|18242|ornithine aminotransferase	AK168851|Oat|18242|ornithine aminotransferase
mm9_v1_chr15_-_57723866_57723934	1.08737	NFIX.p2	AK075631|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr10_-_76880955_76880972	1.07748	NFIX.p2	BC051107|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403106|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403107|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403108|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403109|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF525421|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AY162454|Adarb1|110532|adenosine deaminase, RNA-specific, B1	BC062806|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr15_-_57723937_57723989	1.06581	NFIX.p2	AK152901|Derl1|67819|Der1-like domain family, member 1	AK148018|Derl1|67819|Der1-like domain family, member 1	AK152197|Derl1|67819|Der1-like domain family, member 1	AK043420|Derl1|67819|Der1-like domain family, member 1	NM_024207|Derl1|67819|Der1-like domain family, member 1	AK007435|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr1_-_160286359_160286472	1.06468	NFIX.p2	BC067038|Fam5b|240843|family with sequence similarity 5, member B	BC076572|Fam5b|240843|family with sequence similarity 5, member B	NM_207583|Fam5b|240843|family with sequence similarity 5, member B	AK032297|Fam5b|240843|family with sequence similarity 5, member B	AK047824|Fam5b|240843|family with sequence similarity 5, member B	AK122549|Fam5b|240843|family with sequence similarity 5, member B
mm9_v1_chr12_-_56593566_56593633	1.05636	NFIX.p2	BC046754|Nfkbia|18035|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	U36277|Nfkbia|18035|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	AK089215|Nfkbia|18035|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	AK151115|Nfkbia|18035|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	AK151608|Nfkbia|18035|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha	NM_010907|Nfkbia|18035|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
mm9_v1_chr5_-_123271207_123271281	1.05231	NFIX.p2	AK152528|Anapc5|59008|anaphase-promoting complex subunit 5	BC010339|Anapc5|59008|anaphase-promoting complex subunit 5	AK013978|Anapc5|59008|anaphase-promoting complex subunit 5	AK031432|Anapc5|59008|anaphase-promoting complex subunit 5	AK168135|Anapc5|59008|anaphase-promoting complex subunit 5
mm9_v1_chr11_+_98698077_98698100	1.05084	NFIX.p2	NM_001080925|Rapgefl1|268480|Rap guanine nucleotide exchange factor (GEF)-like 1
mm9_v1_chr10_-_76880977_76881002	1.04897	NFIX.p2	AK164931|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AK141777|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr2_-_5635517_5635531	1.03661	NFIX.p2	AK147657|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK162754|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr7_+_53039094_53039107	1.03495	NFIX.p2	BC059845|Lmtk3|381983|lemur tyrosine kinase 3
mm9_v1_chr9_+_107838164_107838328	1.0214	NFIX.p2	AK085143|Camkv|235604|CaM kinase-like vesicle-associated	NM_145621|Camkv|235604|CaM kinase-like vesicle-associated	BC017634|Camkv|235604|CaM kinase-like vesicle-associated	BC111033|Camkv|235604|CaM kinase-like vesicle-associated	AK147323|Camkv|235604|CaM kinase-like vesicle-associated	BC022169|Camkv|235604|CaM kinase-like vesicle-associated	BC086762|Camkv|235604|CaM kinase-like vesicle-associated
mm9_v1_chrX_-_101396356_101396482	1.01162	NFIX.p2	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr14_+_67853597_67853948	0.985166	NFIX.p2	U92703|Ebf2|13592|early B-cell factor 2	BC049188|Ebf2|13592|early B-cell factor 2	U71189|Ebf2|13592|early B-cell factor 2	U82441|Ebf2|13592|early B-cell factor 2
mm9_v1_chr2_+_106535757_106535757	0.981856	NFIX.p2	AK012553|Mpped2|77015|metallophosphoesterase domain containing 2	NM_029837|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr11_+_72028639_72028830	0.981787	NFIX.p2	AK044443|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	NM_001163728|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	AK043242|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	AK132388|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene	AK016202|4930563E22Rik|75304|RIKEN cDNA 4930563E22 gene
mm9_v1_chr4_+_41702080_41702128	0.979532	NFIX.p2	NM_016658|Galt|14430|galactose-1-phosphate uridyl transferase
mm9_v1_chr6_-_7643156_7643286	0.970698	NFIX.p2	AK167933|Asns|27053|asparagine synthetase	AK167524|Asns|27053|asparagine synthetase	BC005552|Asns|27053|asparagine synthetase	NM_012055|Asns|27053|asparagine synthetase	U38940|Asns|27053|asparagine synthetase	AK160459|Asns|27053|asparagine synthetase	AK076207|Asns|27053|asparagine synthetase
mm9_v1_chr9_+_107904919_107905018	0.970104	NFIX.p2	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr4_+_101180580_101180604	0.963863	NFIX.p2	NM_001164584|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	NM_001164585|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK030374|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK122293|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr13_-_67162084_67162105	0.958531	NFIX.p2	AK019536|Zfp712|78251|zinc finger protein 712	NM_001166218|Zfp712|78251|zinc finger protein 712
mm9_v1_chr9_+_117949578_117949817	0.957236	NFIX.p2	NM_001048146|Azi2|27215|5-azacytidine induced gene 2	NM_013727|Azi2|27215|5-azacytidine induced gene 2	AK004992|Azi2|27215|5-azacytidine induced gene 2	AK165549|Azi2|27215|5-azacytidine induced gene 2	AK153477|Azi2|27215|5-azacytidine induced gene 2	AK167783|Azi2|27215|5-azacytidine induced gene 2	AK036102|Azi2|27215|5-azacytidine induced gene 2	AK134714|Azi2|27215|5-azacytidine induced gene 2	BC006851|Azi2|27215|5-azacytidine induced gene 2	AB007141|Azi2|27215|5-azacytidine induced gene 2	AK030076|Azi2|27215|5-azacytidine induced gene 2	AK015942|Azi2|27215|5-azacytidine induced gene 2
mm9_v1_chr11_-_4060222_4060295	0.955477	NFIX.p2	AK076934|Ccdc157|216516|coiled-coil domain containing 157	AK143216|Ccdc157|216516|coiled-coil domain containing 157	AK220409|Ccdc157|216516|coiled-coil domain containing 157	AK133165|Ccdc157|216516|coiled-coil domain containing 157	NM_001164620|Ccdc157|216516|coiled-coil domain containing 157	NM_177616|Ccdc157|216516|coiled-coil domain containing 157
mm9_v1_chr19_-_24936141_24936299	0.949673	NFIX.p2	BC115937|Pgm5|226041|phosphoglucomutase 5	AK076484|Pgm5|226041|phosphoglucomutase 5
mm9_v1_chr2_+_90725895_90726123	0.949173	NFIX.p2	NM_026161|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	BC087832|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	AK002948|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	BC027315|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr6_-_82602836_82602872	0.947571	NFIX.p2	BC023189|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK167631|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK010135|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK010300|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	NM_025882|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK145365|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK011595|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)	AK160582|Pole4|66979|polymerase (DNA-directed), epsilon 4 (p12 subunit)
mm9_v1_chr2_-_151458299_151458319	0.945843	NFIX.p2	AK047595|Snph|241727|syntaphilin	AK138230|Snph|241727|syntaphilin	AK047568|Snph|241727|syntaphilin
mm9_v1_chr11_+_83777922_83777974	0.94135	NFIX.p2	NM_001115009|Synrg|217030|synergin, gamma	BC056370|Synrg|217030|synergin, gamma	NM_194341|Synrg|217030|synergin, gamma
mm9_v1_chr15_-_94234549_94234733	0.931301	NFIX.p2	AJ512753|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	BC121792|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	AY189815|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	AY189816|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm9_v1_chr7_-_139508762_139508845	0.925976	NFIX.p2	AK019474|Chst15|77590|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	BC031443|Chst15|77590|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	AK083614|Chst15|77590|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	NM_029935|Chst15|77590|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
mm9_v1_chr8_-_97666364_97666472	0.907746	NFIX.p2	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr1_+_148344816_148344867	0.901013	NFIX.p2	NM_001145807|Fam5c|215378|family with sequence similarity 5, member C	AK083233|Fam5c|215378|family with sequence similarity 5, member C	BC030498|Fam5c|215378|family with sequence similarity 5, member C	AK140520|Fam5c|215378|family with sequence similarity 5, member C
mm9_v1_chr16_+_21423263_21423279	0.898921	NFIX.p2	AK141678|Vps8|209018|vacuolar protein sorting 8 homolog (S. cerevisiae)	AK149336|Vps8|209018|vacuolar protein sorting 8 homolog (S. cerevisiae)	BC055323|Vps8|209018|vacuolar protein sorting 8 homolog (S. cerevisiae)
mm9_v1_chr12_+_4776100_4776256	0.898343	NFIX.p2	AK013595|Pfn4|382562|profilin family, member 4	NM_028376|Pfn4|382562|profilin family, member 4	AY495949|Pfn4|382562|profilin family, member 4	BC116888|Pfn4|382562|profilin family, member 4	BC116890|Pfn4|382562|profilin family, member 4
mm9_v1_chr1_+_55188086_55188145	0.892449	NFIX.p2	NM_025283|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK162327|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK147857|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	AK020446|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC028500|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC037499|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC058168|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	BC052475|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)	U01138|Mobkl3|19070|MOB1, Mps One Binder kinase activator-like 3 (yeast)
mm9_v1_chr11_+_53380870_53380943	0.887743	NFIX.p2	AK161223|Kif3a|16568|kinesin family member 3A	NM_008443|Kif3a|16568|kinesin family member 3A	D12645|Kif3a|16568|kinesin family member 3A	AK161920|Kif3a|16568|kinesin family member 3A	AK169425|Kif3a|16568|kinesin family member 3A	BC052707|Kif3a|16568|kinesin family member 3A	BC044720|Kif3a|16568|kinesin family member 3A	AK147078|Kif3a|16568|kinesin family member 3A	BC023936|Kif3a|16568|kinesin family member 3A
mm9_v1_chr15_-_58913543_58913652	0.877935	NFIX.p2	BC024131|Mtss1|211401|metastasis suppressor 1	AK083756|Mtss1|211401|metastasis suppressor 1	AK046628|Mtss1|211401|metastasis suppressor 1	AK129139|Mtss1|211401|metastasis suppressor 1	NM_001146180|Mtss1|211401|metastasis suppressor 1	NM_144800|Mtss1|211401|metastasis suppressor 1
mm9_v1_chr9_-_121404799_121404856	0.870019	NFIX.p2	NM_031161|Cck|12424|cholecystokinin
mm9_v1_chr19_+_47253484_47253552	0.866428	NFIX.p2	BC058386|Neurl1a|18011|neuralized homolog 1A (Drosophila)	AK046382|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr16_+_13986691_13986753	0.86039	NFIX.p2	AK049997|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK076136|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK139470|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK136859|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	NM_144518|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK019307|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	BC022741|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene	AK035868|2900011O08Rik|67254|RIKEN cDNA 2900011O08 gene
mm9_v1_chr11_+_45869473_45869501	0.859001	NFIX.p2	NM_009616|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)	BC093480|Adam19|11492|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm9_v1_chr10_+_77441365_77441428	0.835504	NFIX.p2	AK003097|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK004032|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	NM_026431|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC016605|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK075794|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC029982|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK165293|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK153233|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	BC010330|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene	AK147511|1810043G02Rik|67884|RIKEN cDNA 1810043G02 gene
mm9_v1_chr2_+_179777418_179777493	0.833623	NFIX.p2	AK173004|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK054560|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK038669|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr1_+_63223396_63223420	0.821833	NFIX.p2	NM_018796|Eef1b2|55949|eukaryotic translation elongation factor 1 beta 2
mm9_v1_chr7_+_72789752_72789811	0.821652	NFIX.p2	AK044290|Tarsl2|272396|threonyl-tRNA synthetase-like 2	NM_172310|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK041280|Tarsl2|272396|threonyl-tRNA synthetase-like 2	BC039225|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK079416|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK040927|Tarsl2|272396|threonyl-tRNA synthetase-like 2
mm9_v1_chr11_+_5688463_5688609	0.821541	NFIX.p2	NM_001146308|Dbnl|13169|drebrin-like	NM_001146309|Dbnl|13169|drebrin-like	NM_013810|Dbnl|13169|drebrin-like	AK053796|Dbnl|13169|drebrin-like	AK046073|Dbnl|13169|drebrin-like	AK151096|Dbnl|13169|drebrin-like	AK152204|Dbnl|13169|drebrin-like	AK153072|Dbnl|13169|drebrin-like	AK161973|Dbnl|13169|drebrin-like	AK159984|Dbnl|13169|drebrin-like	AK168898|Dbnl|13169|drebrin-like	AK134136|Dbnl|13169|drebrin-like	AK134487|Dbnl|13169|drebrin-like	AK140752|Dbnl|13169|drebrin-like	AK146920|Dbnl|13169|drebrin-like	AK152110|Dbnl|13169|drebrin-like	BC046430|Dbnl|13169|drebrin-like	AK078082|Dbnl|13169|drebrin-like	AK172471|Dbnl|13169|drebrin-like	U58884|Dbnl|13169|drebrin-like	AK153389|Dbnl|13169|drebrin-like	AK142818|Dbnl|13169|drebrin-like	AK167956|Dbnl|13169|drebrin-like	AY098595|Dbnl|13169|drebrin-like	AK199448|Dbnl|13169|drebrin-like	AK203166|Dbnl|13169|drebrin-like
mm9_v1_chr8_-_34752419_34752455	0.814762	NFIX.p2	D88447|Ubxn8|108159|UBX domain protein 8	AK011496|Ubxn8|108159|UBX domain protein 8	AK132565|Ubxn8|108159|UBX domain protein 8	NM_178648|Ubxn8|108159|UBX domain protein 8
mm9_v1_chr1_-_78485413_78485452	0.813889	NFIX.p2	AK168923|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK045432|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	NM_011811|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	BC002313|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK076607|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK134799|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK010271|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK012154|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK165645|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK167945|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	AK169621|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit	BC016428|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit
mm9_v1_chr8_-_55809700_55809720	0.806661	NFIX.p2	AK013889|Wdr17|244484|WD repeat domain 17	AK020995|Wdr17|244484|WD repeat domain 17	AK044241|Wdr17|244484|WD repeat domain 17	NM_001172152|Wdr17|244484|WD repeat domain 17
mm9_v1_chr2_+_21289168_21289199	0.805843	NFIX.p2	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr4_-_141155782_141155838	0.795674	NFIX.p2	X66903|Fblim1|74202|filamin binding LIM protein 1	NM_001163256|Fblim1|74202|filamin binding LIM protein 1
mm9_v1_chr4_+_49534088_49534181	0.795222	NFIX.p2	AK051265|Zfp189|230162|zinc finger protein 189	NM_145547|Zfp189|230162|zinc finger protein 189	BC021326|Zfp189|230162|zinc finger protein 189	AK049475|Zfp189|230162|zinc finger protein 189	BC087833|Zfp189|230162|zinc finger protein 189
mm9_v1_chr7_+_29052821_29052973	0.792577	NFIX.p2	BC094513|Eid2|386655|EP300 interacting inhibitor of differentiation 2	NM_198425|Eid2|386655|EP300 interacting inhibitor of differentiation 2	AY251273|Eid2|386655|EP300 interacting inhibitor of differentiation 2
mm9_v1_chr14_+_76245136_76245138	0.791064	NFIX.p2	AK149695|Tpt1|22070|tumor protein, translationally-controlled 1	AK150500|Tpt1|22070|tumor protein, translationally-controlled 1	AK151266|Tpt1|22070|tumor protein, translationally-controlled 1	AK151375|Tpt1|22070|tumor protein, translationally-controlled 1	AK151894|Tpt1|22070|tumor protein, translationally-controlled 1	AK152690|Tpt1|22070|tumor protein, translationally-controlled 1	AK159516|Tpt1|22070|tumor protein, translationally-controlled 1	AK165736|Tpt1|22070|tumor protein, translationally-controlled 1	AK167413|Tpt1|22070|tumor protein, translationally-controlled 1	AK167936|Tpt1|22070|tumor protein, translationally-controlled 1	AK168151|Tpt1|22070|tumor protein, translationally-controlled 1	AK150300|Tpt1|22070|tumor protein, translationally-controlled 1	AK150858|Tpt1|22070|tumor protein, translationally-controlled 1	AK151059|Tpt1|22070|tumor protein, translationally-controlled 1	AK152808|Tpt1|22070|tumor protein, translationally-controlled 1	AK159565|Tpt1|22070|tumor protein, translationally-controlled 1	X06407|Tpt1|22070|tumor protein, translationally-controlled 1
mm9_v1_chr17_-_25570721_25570730	0.780906	NFIX.p2	AB041801|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	AK147242|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	NM_001163691|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	NM_021415|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit	AK043501|Cacna1h|58226|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm9_v1_chr7_-_117009158_117009192	0.780128	NFIX.p2	AK142950|Scube2|56788|signal peptide, CUB domain, EGF-like 2	NM_020052|Scube2|56788|signal peptide, CUB domain, EGF-like 2
mm9_v1_chr7_-_120512849_120512864	0.777971	NFIX.p2	BC050781|Btbd10|68815|BTB (POZ) domain containing 10	NM_133700|Btbd10|68815|BTB (POZ) domain containing 10
mm9_v1_chr10_+_81022229_81022246	0.769861	NFIX.p2	AK131845|Aes|14797|amino-terminal enhancer of split	AK131994|Aes|14797|amino-terminal enhancer of split
mm9_v1_chr17_-_25707599_25707638	0.763988	NFIX.p2	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr3_+_51219971_51220063	0.760604	NFIX.p2	AF510858|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit	BC050017|Naa15|74838|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm9_v1_chr16_+_31428887_31428913	0.756416	NFIX.p2	AK137955|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	BC096457|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr8_-_124431581_124431590	0.74672	NFIX.p2	AK142288|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	NM_011404|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr7_+_27620354_27620362	0.745649	NFIX.p2	AK149439|Cyp2a5|13087|cytochrome P450, family 2, subfamily a, polypeptide 5	NM_007812|Cyp2a5|13087|cytochrome P450, family 2, subfamily a, polypeptide 5	AK132617|Cyp2a5|13087|cytochrome P450, family 2, subfamily a, polypeptide 5	BC138796|Cyp2a5|13087|cytochrome P450, family 2, subfamily a, polypeptide 5	BC138798|Cyp2a5|13087|cytochrome P450, family 2, subfamily a, polypeptide 5
mm9_v1_chr2_-_92886300_92886323	0.740385	NFIX.p2	NM_001177536|Prdm11|100042784|PR domain containing 11
mm9_v1_chr6_-_125444722_125444810	0.726843	NFIX.p2	AK151619|Cd9|12527|CD9 antigen	AK170310|Cd9|12527|CD9 antigen	AK151443|Cd9|12527|CD9 antigen	BC070474|Cd9|12527|CD9 antigen	NM_007657|Cd9|12527|CD9 antigen	AK002251|Cd9|12527|CD9 antigen	AK012793|Cd9|12527|CD9 antigen
mm9_v1_chr11_+_94871181_94871224	0.709331	NFIX.p2	AK049753|Samd14|217125|sterile alpha motif domain containing 14	NM_146025|Samd14|217125|sterile alpha motif domain containing 14	AK047184|Samd14|217125|sterile alpha motif domain containing 14
mm9_v1_chr1_+_91476810_91476856	0.708493	NFIX.p2	AK147521|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr12_-_56922146_56922187	0.708226	NFIX.p2	AK046680|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596972|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596973|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	AY596974|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_001003719|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_001112714|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1	NM_019994|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1
mm9_v1_chr14_-_64162744_64162804	0.706236	NFIX.p2	BC046275|Mtmr9|210376|myotubularin related protein 9	NM_177594|Mtmr9|210376|myotubularin related protein 9	AK035026|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr5_+_139899132_139899277	0.703745	NFIX.p2	AK030375|Gpr30|76854|G protein-coupled receptor 30	NM_029771|Gpr30|76854|G protein-coupled receptor 30	AK018203|Gpr30|76854|G protein-coupled receptor 30	BC138598|Gpr30|76854|G protein-coupled receptor 30	BC138616|Gpr30|76854|G protein-coupled receptor 30
mm9_v1_chr2_-_37286367_37286438	0.702119	NFIX.p2	BC032933|Zbtb6|241322|zinc finger and BTB domain containing 6	AK044125|Zbtb6|241322|zinc finger and BTB domain containing 6	AK050827|Zbtb6|241322|zinc finger and BTB domain containing 6	NM_146253|Zbtb6|241322|zinc finger and BTB domain containing 6
mm9_v1_chr6_+_113232319_113232420	0.701068	NFIX.p2	AK047431|Cpne9|211232|copine family member IX	BC115728|Cpne9|211232|copine family member IX	AK047571|Cpne9|211232|copine family member IX	AK044080|Cpne9|211232|copine family member IX
mm9_v1_chr2_+_126378563_126378890	0.69929	NFIX.p2	AK165446|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	NM_011978|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144069|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC013442|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC024735|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	BC022170|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AJ223958|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AK144070|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF033031|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2	AF072757|Slc27a2|26458|solute carrier family 27 (fatty acid transporter), member 2
mm9_v1_chr17_-_56214328_56214451	0.699147	NFIX.p2	BC016412|Ubxn6|66530|UBX domain protein 6	AK148170|Ubxn6|66530|UBX domain protein 6	BC049963|Ubxn6|66530|UBX domain protein 6	NM_024432|Ubxn6|66530|UBX domain protein 6	AK008942|Ubxn6|66530|UBX domain protein 6	AF272895|Ubxn6|66530|UBX domain protein 6	AK161273|Ubxn6|66530|UBX domain protein 6	AK075705|Ubxn6|66530|UBX domain protein 6	AK082510|Ubxn6|66530|UBX domain protein 6
mm9_v1_chr8_-_30330079_30330107	0.68763	NFIX.p2	AJ487854|Unc5d|210801|unc-5 homolog D (C. elegans)	NM_153135|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr11_+_4537719_4537795	0.685662	NFIX.p2	AK051387|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK048876|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	AK148105|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	BC013537|Ascc2|75452|activating signal cointegrator 1 complex subunit 2	NM_029291|Ascc2|75452|activating signal cointegrator 1 complex subunit 2
mm9_v1_chr5_-_123271283_123271353	0.682276	NFIX.p2	AK147951|Anapc5|59008|anaphase-promoting complex subunit 5	BC046804|Anapc5|59008|anaphase-promoting complex subunit 5	AK075969|Anapc5|59008|anaphase-promoting complex subunit 5	AK159713|Anapc5|59008|anaphase-promoting complex subunit 5	AK159916|Anapc5|59008|anaphase-promoting complex subunit 5	AK167561|Anapc5|59008|anaphase-promoting complex subunit 5	AK168737|Anapc5|59008|anaphase-promoting complex subunit 5	AK168814|Anapc5|59008|anaphase-promoting complex subunit 5	AB041593|Anapc5|59008|anaphase-promoting complex subunit 5	AK151314|Anapc5|59008|anaphase-promoting complex subunit 5	AK151905|Anapc5|59008|anaphase-promoting complex subunit 5	AK152981|Anapc5|59008|anaphase-promoting complex subunit 5	AK153373|Anapc5|59008|anaphase-promoting complex subunit 5	AK153422|Anapc5|59008|anaphase-promoting complex subunit 5	AK159204|Anapc5|59008|anaphase-promoting complex subunit 5	AK148679|Anapc5|59008|anaphase-promoting complex subunit 5	AK049719|Anapc5|59008|anaphase-promoting complex subunit 5	AK169196|Anapc5|59008|anaphase-promoting complex subunit 5	AK088327|Anapc5|59008|anaphase-promoting complex subunit 5	NM_001042491|Anapc5|59008|anaphase-promoting complex subunit 5	NM_021505|Anapc5|59008|anaphase-promoting complex subunit 5
mm9_v1_chr12_-_66066481_66066522	0.67926	NFIX.p2	BC018469|Klhl28|66689|kelch-like 28 (Drosophila)	BC037017|Klhl28|66689|kelch-like 28 (Drosophila)	AK002637|Klhl28|66689|kelch-like 28 (Drosophila)	AK013278|Klhl28|66689|kelch-like 28 (Drosophila)	AK012778|Klhl28|66689|kelch-like 28 (Drosophila)	AK014466|Klhl28|66689|kelch-like 28 (Drosophila)	NM_025707|Klhl28|66689|kelch-like 28 (Drosophila)
mm9_v1_chr7_+_108599819_108599861	0.675162	NFIX.p2	AK158354|Pde2a|207728|phosphodiesterase 2A, cGMP-stimulated	AK172397|Pde2a|207728|phosphodiesterase 2A, cGMP-stimulated	AK170573|Pde2a|207728|phosphodiesterase 2A, cGMP-stimulated	AK170395|Pde2a|207728|phosphodiesterase 2A, cGMP-stimulated
mm9_v1_chr9_+_59387443_59387536	0.672175	NFIX.p2	AK075911|Hexa|15211|hexosaminidase A	NM_010421|Hexa|15211|hexosaminidase A	AK168186|Hexa|15211|hexosaminidase A	AK159091|Hexa|15211|hexosaminidase A	U07631|Hexa|15211|hexosaminidase A	AK159814|Hexa|15211|hexosaminidase A	AK167013|Hexa|15211|hexosaminidase A	AK170903|Hexa|15211|hexosaminidase A	AK075895|Hexa|15211|hexosaminidase A	AK151960|Hexa|15211|hexosaminidase A	AK080777|Hexa|15211|hexosaminidase A	AK159890|Hexa|15211|hexosaminidase A	AK150444|Hexa|15211|hexosaminidase A	BC010755|Hexa|15211|hexosaminidase A	AK160112|Hexa|15211|hexosaminidase A	X64331|Hexa|15211|hexosaminidase A
mm9_v1_chr1_-_156946739_156946767	0.668742	NFIX.p2	BC051986|Ier5|15939|immediate early response 5	BC021013|Ier5|15939|immediate early response 5	BC037147|Ier5|15939|immediate early response 5	AK146609|Ier5|15939|immediate early response 5	AK150461|Ier5|15939|immediate early response 5	AF079527|Ier5|15939|immediate early response 5	NM_010500|Ier5|15939|immediate early response 5
mm9_v1_chr4_-_134989653_134989790	0.665341	NFIX.p2	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr3_+_108394195_108394337	0.658244	NFIX.p2	NM_181400|Wdr47|99512|WD repeat domain 47	AK047357|Wdr47|99512|WD repeat domain 47	AK163422|Wdr47|99512|WD repeat domain 47	BC040337|Wdr47|99512|WD repeat domain 47
mm9_v1_chr7_+_106529978_106530041	0.656111	NFIX.p2	AK141189|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr3_-_37623250_37623411	0.655569	NFIX.p2	AK039231|Gm5148|381438|predicted gene 5148	AK039519|Gm5148|381438|predicted gene 5148	AK039710|Gm5148|381438|predicted gene 5148	NM_198657|Gm5148|381438|predicted gene 5148	AK045832|Gm5148|381438|predicted gene 5148
mm9_v1_chr12_+_117724182_117724212	0.653905	NFIX.p2	NM_011215|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK081267|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK138655|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	BC048570|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2
mm9_v1_chr13_-_25361773_25361915	0.65211	NFIX.p2	AK138191|Nrsn1|22360|neurensin 1	D83206|Nrsn1|22360|neurensin 1	AK160941|Nrsn1|22360|neurensin 1	NM_009513|Nrsn1|22360|neurensin 1
mm9_v1_chr7_+_108599740_108599766	0.648674	NFIX.p2	NM_001143849|Pde2a|207728|phosphodiesterase 2A, cGMP-stimulated
mm9_v1_chr6_-_83522410_83522497	0.643989	NFIX.p2	AK136961|Stambp|70527|STAM binding protein	AK220541|Stambp|70527|STAM binding protein	BC006939|Stambp|70527|STAM binding protein	BC003497|Stambp|70527|STAM binding protein	BC025111|Stambp|70527|STAM binding protein	AB010123|Stambp|70527|STAM binding protein	AK019907|Stambp|70527|STAM binding protein	AK046995|Stambp|70527|STAM binding protein	AK017600|Stambp|70527|STAM binding protein	AK168810|Stambp|70527|STAM binding protein	AK139391|Stambp|70527|STAM binding protein	NM_024239|Stambp|70527|STAM binding protein
mm9_v1_chr6_+_48791616_48791654	0.643882	NFIX.p2	NM_001098271|Tmem176a|66058|transmembrane protein 176A
mm9_v1_chr9_-_99776467_99776588	0.642498	NFIX.p2	BC069948|Sox14|20669|SRY-box containing gene 14	AK138208|Sox14|20669|SRY-box containing gene 14	BC055767|Sox14|20669|SRY-box containing gene 14	BC083360|Sox14|20669|SRY-box containing gene 14	BC100555|Sox14|20669|SRY-box containing gene 14	NM_011440|Sox14|20669|SRY-box containing gene 14
mm9_v1_chr11_+_72503487_72503520	0.642415	NFIX.p2	BC139231|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	BC145583|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	NM_009671|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB011370|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AB098329|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1	AK134008|Ankfy1|11736|ankyrin repeat and FYVE domain containing 1
mm9_v1_chr7_-_118923483_118923501	0.640069	NFIX.p2	BC024988|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	NM_173739|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4	AK084671|Galntl4|233733|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4
mm9_v1_chr12_+_17697623_17697667	0.639236	NFIX.p2	AF085192|Hpcal1|53602|hippocalcin-like 1	AK002849|Hpcal1|53602|hippocalcin-like 1	BC001997|Hpcal1|53602|hippocalcin-like 1
mm9_v1_chrX_+_8469507_8469585	0.638917	NFIX.p2	AK046767|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene	BC055780|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr17_+_46390828_46391138	0.638053	NFIX.p2	AK134769|Gm88|224813|predicted gene 88	NM_001111142|Gm88|224813|predicted gene 88	BC147714|Gm88|224813|predicted gene 88	BC172136|Gm88|224813|predicted gene 88
mm9_v1_chr7_-_52384104_52384149	0.637457	NFIX.p2	AK007609|Rpl13a|22121|ribosomal protein L13A	AK170030|Rpl13a|22121|ribosomal protein L13A	NM_009438|Rpl13a|22121|ribosomal protein L13A	AK077512|Rpl13a|22121|ribosomal protein L13A	AK146318|Rpl13a|22121|ribosomal protein L13A	AK156035|Rpl13a|22121|ribosomal protein L13A	AK159882|Rpl13a|22121|ribosomal protein L13A	AK168784|Rpl13a|22121|ribosomal protein L13A	AK168903|Rpl13a|22121|ribosomal protein L13A	BC086896|Rpl13a|22121|ribosomal protein L13A
mm9_v1_chr11_-_20731016_20731238	0.635805	NFIX.p2	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr9_-_75458954_75458978	0.631193	NFIX.p2	AK079077|Tmod2|50876|tropomodulin 2	AK164178|Tmod2|50876|tropomodulin 2
mm9_v1_chr7_-_137663020_137663074	0.621143	NFIX.p2	BC050948|Ate1|11907|arginyltransferase 1	NM_001136054|Ate1|11907|arginyltransferase 1	AK167591|Ate1|11907|arginyltransferase 1	BC042601|Ate1|11907|arginyltransferase 1	NM_013799|Ate1|11907|arginyltransferase 1	AK148442|Ate1|11907|arginyltransferase 1
mm9_v1_chr15_+_44027680_44027795	0.619644	NFIX.p2	AK134591|Trhr|22045|thyrotropin releasing hormone receptor	NM_013696|Trhr|22045|thyrotropin releasing hormone receptor	M59811|Trhr|22045|thyrotropin releasing hormone receptor	M94384|Trhr|22045|thyrotropin releasing hormone receptor	BC109005|Trhr|22045|thyrotropin releasing hormone receptor	BC109006|Trhr|22045|thyrotropin releasing hormone receptor	BC128269|Trhr|22045|thyrotropin releasing hormone receptor
mm9_v1_chr2_+_24909898_24909973	0.612403	NFIX.p2	NM_001039386|Nelf|56876|nasal embryonic LHRH factor	NM_001039387|Nelf|56876|nasal embryonic LHRH factor	NM_001177654|Nelf|56876|nasal embryonic LHRH factor	NM_001177655|Nelf|56876|nasal embryonic LHRH factor	NM_020276|Nelf|56876|nasal embryonic LHRH factor	AK004986|Nelf|56876|nasal embryonic LHRH factor	AK041478|Nelf|56876|nasal embryonic LHRH factor	AK158803|Nelf|56876|nasal embryonic LHRH factor	AF266508|Nelf|56876|nasal embryonic LHRH factor	AK019560|Nelf|56876|nasal embryonic LHRH factor	BC006642|Nelf|56876|nasal embryonic LHRH factor	AK053402|Nelf|56876|nasal embryonic LHRH factor	AK165300|Nelf|56876|nasal embryonic LHRH factor
mm9_v1_chr14_+_8835385_8835479	0.611301	NFIX.p2	NM_025341|Abhd6|66082|abhydrolase domain containing 6	AK090076|Abhd6|66082|abhydrolase domain containing 6	BC027011|Abhd6|66082|abhydrolase domain containing 6	AK168782|Abhd6|66082|abhydrolase domain containing 6	AK002883|Abhd6|66082|abhydrolase domain containing 6	AK011887|Abhd6|66082|abhydrolase domain containing 6	AK076105|Abhd6|66082|abhydrolase domain containing 6
mm9_v1_chr6_-_142519807_142519890	0.608834	NFIX.p2	D88159|Kcnj8|16523|potassium inwardly-rectifying channel, subfamily J, member 8	AK156346|Kcnj8|16523|potassium inwardly-rectifying channel, subfamily J, member 8	NM_008428|Kcnj8|16523|potassium inwardly-rectifying channel, subfamily J, member 8	AK031777|Kcnj8|16523|potassium inwardly-rectifying channel, subfamily J, member 8
mm9_v1_chr5_-_92471976_92472071	0.606386	NFIX.p2	BC117894|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	BC117895|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029066|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	NM_177270|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AB029065|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	NM_016912|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)	AK144574|Cdkl2|53886|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm9_v1_chr1_-_132359292_132359319	0.606264	NFIX.p2	AK160994|Cd55|13136|CD55 antigen	AK030285|Cd55|13136|CD55 antigen	NM_010016|Cd55|13136|CD55 antigen
mm9_v1_chr5_-_139960370_139960390	0.60199	NFIX.p2	BC058780|Zfand2a|100494|zinc finger, AN1-type domain 2A	AK146082|Zfand2a|100494|zinc finger, AN1-type domain 2A	AK171245|Zfand2a|100494|zinc finger, AN1-type domain 2A
mm9_v1_chr7_-_7251473_7251490	0.592463	NFIX.p2	AK133759|Clcn4-2|12727|chloride channel 4-2	AK160325|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr11_+_30785357_30785392	0.588178	NFIX.p2	AK141614|Gpr75|237716|G protein-coupled receptor 75
mm9_v1_chr13_+_55794441_55794492	0.587784	NFIX.p2	AK088693|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	BC051430|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene	NM_181278|B230219D22Rik|78521|RIKEN cDNA B230219D22 gene
mm9_v1_chr18_-_36838969_36839019	0.585492	NFIX.p2	AK171634|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3	BC024809|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3	NM_146085|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr2_+_109731003_109731053	0.584803	NFIX.p2	AK135810|Lin7c|22343|lin-7 homolog C (C. elegans)	AK083299|Lin7c|22343|lin-7 homolog C (C. elegans)	AK015399|Lin7c|22343|lin-7 homolog C (C. elegans)	AK078923|Lin7c|22343|lin-7 homolog C (C. elegans)	AK128989|Lin7c|22343|lin-7 homolog C (C. elegans)	BC052471|Lin7c|22343|lin-7 homolog C (C. elegans)	AK133531|Lin7c|22343|lin-7 homolog C (C. elegans)	AF173083|Lin7c|22343|lin-7 homolog C (C. elegans)	AF087695|Lin7c|22343|lin-7 homolog C (C. elegans)	BC046966|Lin7c|22343|lin-7 homolog C (C. elegans)	NM_011699|Lin7c|22343|lin-7 homolog C (C. elegans)	AK161076|Lin7c|22343|lin-7 homolog C (C. elegans)
mm9_v1_chr11_+_52578152_52578230	0.580608	NFIX.p2	AK046350|Fstl4|320027|follistatin-like 4	AK081114|Fstl4|320027|follistatin-like 4	AF374459|Fstl4|320027|follistatin-like 4	NM_177059|Fstl4|320027|follistatin-like 4	BC132353|Fstl4|320027|follistatin-like 4	BC144824|Fstl4|320027|follistatin-like 4
mm9_v1_chrX_-_101396512_101396524	0.579904	NFIX.p2	AK054513|C77370|245555|expressed sequence C77370
mm9_v1_chr18_-_33623668_33623692	0.578742	NFIX.p2	NM_001109988|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr10_-_61802889_61803289	0.57819	NFIX.p2	AK167468|Hk1|15275|hexokinase 1	AK143630|Hk1|15275|hexokinase 1	NM_001146100|Hk1|15275|hexokinase 1	BC072628|Hk1|15275|hexokinase 1
mm9_v1_chr12_+_17697604_17697620	0.575387	NFIX.p2	NM_016677|Hpcal1|53602|hippocalcin-like 1
mm9_v1_chr8_-_28239077_28239111	0.575248	NFIX.p2	BC098232|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	BC021918|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK151198|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK012459|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK012680|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK028228|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK083122|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	NM_025686|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like	AK017767|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
mm9_v1_chr9_+_59387632_59387710	0.574523	NFIX.p2	
mm9_v1_chr12_+_17697684_17697832	0.573005	NFIX.p2	
mm9_v1_chr16_+_31428833_31428879	0.572783	NFIX.p2	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chrX_+_12619133_12619176	0.572202	NFIX.p2	AK134096|5730405O15Rik|70489|RIKEN cDNA 5730405O15 gene	AK017500|5730405O15Rik|70489|RIKEN cDNA 5730405O15 gene
mm9_v1_chr7_-_31230577_31230646	0.570996	NFIX.p2	BC021877|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	NM_007467|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr1_-_174136874_174136913	0.570223	NFIX.p2	NM_011063|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr8_-_3624988_3625048	0.555718	NFIX.p2	AK003002|Pcp2|18545|Purkinje cell protein 2 (L7)	AK160398|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129804|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr5_+_141717487_141717516	0.552693	NFIX.p2	NM_177879|Sdk1|330222|sidekick homolog 1 (chicken)
mm9_v1_chr10_+_28863801_28863929	0.550172	NFIX.p2	NM_026138|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene	AK030682|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene
mm9_v1_chr7_-_134028480_134028480	0.548734	NFIX.p2	NM_001163774|Taok2|381921|TAO kinase 2	NM_001163775|Taok2|381921|TAO kinase 2
mm9_v1_chr5_-_31395853_31395951	0.54817	NFIX.p2	U76007|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	AK165796|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	BC066199|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	AK144568|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3	NM_011773|Slc30a3|22784|solute carrier family 30 (zinc transporter), member 3
mm9_v1_chr5_-_141178229_141178331	0.547617	NFIX.p2	AK029333|Iqce|74239|IQ motif containing E	BC059223|Iqce|74239|IQ motif containing E	NM_028833|Iqce|74239|IQ motif containing E
mm9_v1_chr17_-_66868909_66869045	0.546583	NFIX.p2	AB232607|Rab12|19328|RAB12, member RAS oncogene family	NM_024448|Rab12|19328|RAB12, member RAS oncogene family
mm9_v1_chr9_+_60560923_60560996	0.543013	NFIX.p2	AK017372|Larp6|67557|La ribonucleoprotein domain family, member 6	AK087521|Larp6|67557|La ribonucleoprotein domain family, member 6	NM_026235|Larp6|67557|La ribonucleoprotein domain family, member 6	AK039614|Larp6|67557|La ribonucleoprotein domain family, member 6	AK020966|Larp6|67557|La ribonucleoprotein domain family, member 6	AK042616|Larp6|67557|La ribonucleoprotein domain family, member 6
mm9_v1_chr8_+_72346327_72346515	0.534639	NFIX.p2	BC060131|Lpar2|53978|lysophosphatidic acid receptor 2	BC064676|Lpar2|53978|lysophosphatidic acid receptor 2	AK144861|Lpar2|53978|lysophosphatidic acid receptor 2	NM_020028|Lpar2|53978|lysophosphatidic acid receptor 2	AK143792|Lpar2|53978|lysophosphatidic acid receptor 2	AK051092|Lpar2|53978|lysophosphatidic acid receptor 2
mm9_v1_chr3_-_63733305_63733317	0.53405	NFIX.p2	AK087526|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene	NM_177856|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene
mm9_v1_chr8_+_18846262_18846328	0.532946	NFIX.p2	BC062903|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	NM_026792|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AK155378|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	AY161042|Agpat5|52123|1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
mm9_v1_chr1_-_94076857_94076917	0.53275	NFIX.p2	AK155250|Hdac4|208727|histone deacetylase 4
mm9_v1_chrX_+_12164878_12165013	0.530001	NFIX.p2	NM_027439|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK168139|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK076495|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK017482|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK151735|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AK029405|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	AB192471|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2	BC014706|Atp6ap2|70495|ATPase, H+ transporting, lysosomal accessory protein 2
mm9_v1_chr13_-_53024983_53025057	0.525609	NFIX.p2	BC026525|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK134886|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK019978|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003219|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK003929|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK169661|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	BC049597|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	NM_016709|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase	AK147855|Auh|11992|AU RNA binding protein/enoyl-coenzyme A hydratase
mm9_v1_chr16_+_14361637_14361715	0.524608	NFIX.p2	AK029876|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	NM_008576|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	AK150015|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	AK152781|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	BC090617|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	AF022908|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm9_v1_chr2_-_160698705_160698728	0.521882	NFIX.p2	AK143296|Zhx3|320799|zinc fingers and homeoboxes 3	BC058111|Zhx3|320799|zinc fingers and homeoboxes 3	NM_177263|Zhx3|320799|zinc fingers and homeoboxes 3
mm9_v1_chr2_+_179777187_179777250	0.52161	NFIX.p2	NM_178750|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	BC054730|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK133944|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr14_-_37781899_37781902	0.518724	NFIX.p2	AK013689|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr2_-_163744663_163744747	0.518457	NFIX.p2	AK134613|Rims4|241770|regulating synaptic membrane exocytosis 4
mm9_v1_chr1_-_63223190_63223282	0.516822	NFIX.p2	BC015300|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	AK166604|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	AK078590|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	AK167705|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	AK146814|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	AK036926|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	AK142711|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	BC006660|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1
mm9_v1_chr7_+_106774445_106774513	0.510115	NFIX.p2	AK141001|Gm10605|100038557|predicted gene 10605
mm9_v1_chr2_+_163820857_163820914	0.509961	NFIX.p2	AK144061|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK002632|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr11_+_17059297_17059300	0.50931	NFIX.p2	NM_024459|Ppp3r1|19058|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm9_v1_chr1_+_107886982_107886982	0.508308	NFIX.p2	AK046562|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122675|Zcchc2|227449|zinc finger, CCHC domain containing 2	NM_001122676|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr9_+_59387346_59387423	0.508261	NFIX.p2	AK144168|Hexa|15211|hexosaminidase A
mm9_v1_chr13_-_46060325_46060353	0.500524	NFIX.p2	BC058178|Atxn1|20238|ataxin 1	AK048268|Atxn1|20238|ataxin 1	NM_009124|Atxn1|20238|ataxin 1	AK169931|Atxn1|20238|ataxin 1
mm9_v1_chr5_+_130007103_130007146	0.497155	NFIX.p2	NM_172276|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK140369|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK031872|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK088182|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	AK170748|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC057314|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC034336|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC034665|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC013466|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)	BC036315|Sfswap|231769|splicing factor, suppressor of white-apricot homolog (Drosophila)
mm9_v1_chr7_-_149280946_149280995	0.494326	NFIX.p2	BC052705|Dusp8|18218|dual specificity phosphatase 8
mm9_v1_chr4_-_106136704_106136777	0.492354	NFIX.p2	AK149520|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9	AK043077|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9
mm9_v1_chrX_-_70905384_70905478	0.492295	NFIX.p2	BC055891|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	BC051996|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AK158755|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr2_+_181414995_181415018	0.489709	NFIX.p2	D86081|Tcea2|21400|transcription elongation factor A (SII), 2	NM_009326|Tcea2|21400|transcription elongation factor A (SII), 2	AK131650|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr5_+_143178045_143178121	0.489413	NFIX.p2	NM_146257|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4	BC025599|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4
mm9_v1_chr17_-_80689434_80689517	0.489343	NFIX.p2	BC079618|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC066091|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	BC065169|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	AK042947|Dhx57|106794|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm9_v1_chr7_-_134028184_134028216	0.488804	NFIX.p2	BC085152|Taok2|381921|TAO kinase 2	AK031190|Taok2|381921|TAO kinase 2
mm9_v1_chr17_+_24607348_24607427	0.484241	NFIX.p2	BC083113|Pgp|67078|phosphoglycolate phosphatase	BC040100|Pgp|67078|phosphoglycolate phosphatase	NM_025954|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr15_-_57723743_57723862	0.483984	NFIX.p2	AK203076|Derl1|67819|Der1-like domain family, member 1	AK207504|Derl1|67819|Der1-like domain family, member 1	AK218964|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr14_-_64162562_64162594	0.482924	NFIX.p2	AK152320|Mtmr9|210376|myotubularin related protein 9
mm9_v1_chr10_-_67011689_67011747	0.479827	NFIX.p2	BC057106|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	BC058407|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	AK155334|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	NM_001005419|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase
mm9_v1_chr17_-_35975148_35975258	0.478717	NFIX.p2	BC003825|Tubb5|22154|tubulin, beta 5	AK076196|Tubb5|22154|tubulin, beta 5	AK148978|Tubb5|22154|tubulin, beta 5	AK167808|Tubb5|22154|tubulin, beta 5	AK168271|Tubb5|22154|tubulin, beta 5	AK169123|Tubb5|22154|tubulin, beta 5	AK011263|Tubb5|22154|tubulin, beta 5	AK165249|Tubb5|22154|tubulin, beta 5	AK169210|Tubb5|22154|tubulin, beta 5	AK010960|Tubb5|22154|tubulin, beta 5	AK011765|Tubb5|22154|tubulin, beta 5	AK012350|Tubb5|22154|tubulin, beta 5	AK017806|Tubb5|22154|tubulin, beta 5	AK051164|Tubb5|22154|tubulin, beta 5	AK051393|Tubb5|22154|tubulin, beta 5	AK083327|Tubb5|22154|tubulin, beta 5	AK146567|Tubb5|22154|tubulin, beta 5	AK151215|Tubb5|22154|tubulin, beta 5	AK151670|Tubb5|22154|tubulin, beta 5	AK160225|Tubb5|22154|tubulin, beta 5	AK161575|Tubb5|22154|tubulin, beta 5	AK167691|Tubb5|22154|tubulin, beta 5	AK167779|Tubb5|22154|tubulin, beta 5	AK167926|Tubb5|22154|tubulin, beta 5	AK169295|Tubb5|22154|tubulin, beta 5	AK169606|Tubb5|22154|tubulin, beta 5	NM_011655|Tubb5|22154|tubulin, beta 5
mm9_v1_chr9_-_29219382_29219527	0.47647	NFIX.p2	AK158752|Ntm|235106|neurotrimin
mm9_v1_chr7_+_80885175_80885216	0.476164	NFIX.p2	NM_001162532|Fam174b|100038347|family with sequence similarity 174, member B
mm9_v1_chr8_+_114535301_114535369	0.475001	NFIX.p2	AK047222|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK087729|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK165074|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AB041559|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK053864|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK081557|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK163044|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AB041557|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK084563|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK041613|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK051818|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	BC012270|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein
mm9_v1_chr18_+_45428413_45428658	0.474625	NFIX.p2	AK076494|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK033158|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr1_-_157883515_157883643	0.47407	NFIX.p2	AK149727|Tor1aip1|208263|torsin A interacting protein 1	AB251963|Tor1aip1|208263|torsin A interacting protein 1	NM_001160018|Tor1aip1|208263|torsin A interacting protein 1	NM_144791|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr17_+_74888823_74888973	0.473827	NFIX.p2	AK166347|Yipf4|67864|Yip1 domain family, member 4	AK009618|Yipf4|67864|Yip1 domain family, member 4	AK083301|Yipf4|67864|Yip1 domain family, member 4	NM_026417|Yipf4|67864|Yip1 domain family, member 4	AK017721|Yipf4|67864|Yip1 domain family, member 4	AK017722|Yipf4|67864|Yip1 domain family, member 4	AK159227|Yipf4|67864|Yip1 domain family, member 4	BC003936|Yipf4|67864|Yip1 domain family, member 4
mm9_v1_chr6_+_90554873_90554957	0.470308	NFIX.p2	NM_027868|Slc41a3|71699|solute carrier family 41, member 3	BC011108|Slc41a3|71699|solute carrier family 41, member 3
mm9_v1_chr14_+_34736806_34736957	0.467126	NFIX.p2	L42114|Gdf10|14560|growth differentiation factor 10	S82648|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr13_-_41454358_41454379	0.466851	NFIX.p2	AK054179|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	AK033729|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9	NM_017464|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr9_+_88442857_88443020	0.466664	NFIX.p2	AK015179|Zfp949|71640|zinc finger protein 949	NM_001142943|Zfp949|71640|zinc finger protein 949	NM_001163061|Zfp949|71640|zinc finger protein 949	AK161903|Zfp949|71640|zinc finger protein 949	BC141009|Zfp949|71640|zinc finger protein 949	BC141010|Zfp949|71640|zinc finger protein 949
mm9_v1_chr18_-_36838916_36838928	0.459796	NFIX.p2	AK141878|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr11_+_4773977_4774007	0.459237	NFIX.p2	AK031804|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AK013140|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AK147786|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	AJ001260|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	NM_008698|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)	BC010837|Nipsnap1|18082|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm9_v1_chr4_-_116324064_116324305	0.458167	NFIX.p2	AF225564|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	BC046762|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011321|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011794|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK160185|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011906|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK005376|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK152086|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	BC039926|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011908|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK144198|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK168950|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011388|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011918|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK146081|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK159573|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK164461|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011667|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK011856|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK146278|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AY207463|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	NM_021473|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr16_+_91225794_91225820	0.457982	NFIX.p2	BC051967|Olig2|50913|oligodendrocyte transcription factor 2	NM_016967|Olig2|50913|oligodendrocyte transcription factor 2	AB038697|Olig2|50913|oligodendrocyte transcription factor 2	AK080615|Olig2|50913|oligodendrocyte transcription factor 2
mm9_v1_chr8_-_28239121_28239185	0.451244	NFIX.p2	AK152842|Brf2|66653|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
mm9_v1_chr8_-_47085062_47085225	0.450899	NFIX.p2	AK075868|Ankrd37|654824|ankyrin repeat domain 37	BC039642|Ankrd37|654824|ankyrin repeat domain 37	BC092377|Ankrd37|654824|ankyrin repeat domain 37	NM_001039562|Ankrd37|654824|ankyrin repeat domain 37	AK020869|Ankrd37|654824|ankyrin repeat domain 37
mm9_v1_chr14_-_21871345_21871395	0.449189	NFIX.p2	BC024595|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr10_+_20672352_20672469	0.446565	NFIX.p2	AK080373|Ahi1|52906|Abelson helper integration site 1	NM_026203|Ahi1|52906|Abelson helper integration site 1	AK005991|Ahi1|52906|Abelson helper integration site 1	AK013997|Ahi1|52906|Abelson helper integration site 1	AK019416|Ahi1|52906|Abelson helper integration site 1	BC106130|Ahi1|52906|Abelson helper integration site 1	BC065146|Ahi1|52906|Abelson helper integration site 1	AK036336|Ahi1|52906|Abelson helper integration site 1	AY133241|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr7_-_7251434_7251459	0.446194	NFIX.p2	AK035804|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr11_-_118216625_118216642	0.438424	NFIX.p2	AK032818|Timp2|21858|tissue inhibitor of metalloproteinase 2	AK144236|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr10_+_87922331_87922408	0.438326	NFIX.p2	BC132079|Sycp3|20962|synaptonemal complex protein 3	BC138509|Sycp3|20962|synaptonemal complex protein 3	NM_011517|Sycp3|20962|synaptonemal complex protein 3	Y08485|Sycp3|20962|synaptonemal complex protein 3	AK131949|Sycp3|20962|synaptonemal complex protein 3	BC048483|Sycp3|20962|synaptonemal complex protein 3	BC089540|Sycp3|20962|synaptonemal complex protein 3	BC099552|Sycp3|20962|synaptonemal complex protein 3
mm9_v1_chr10_-_75226917_75226983	0.436178	NFIX.p2	BC039933|Cabin1|104248|calcineurin binding protein 1
mm9_v1_chr7_-_53069599_53069692	0.434819	NFIX.p2	BC004662|Cyth2|19158|cytohesin 2	AB013466|Cyth2|19158|cytohesin 2	AK168979|Cyth2|19158|cytohesin 2	AK143829|Cyth2|19158|cytohesin 2	AK172050|Cyth2|19158|cytohesin 2	AF079971|Cyth2|19158|cytohesin 2	AK045451|Cyth2|19158|cytohesin 2	BC088833|Cyth2|19158|cytohesin 2	AK078067|Cyth2|19158|cytohesin 2	NM_001112701|Cyth2|19158|cytohesin 2	NM_011181|Cyth2|19158|cytohesin 2
mm9_v1_chr10_-_13588578_13588812	0.42995	NFIX.p2	AK008210|Aig1|66253|androgen-induced 1	NM_025446|Aig1|66253|androgen-induced 1	AK162306|Aig1|66253|androgen-induced 1	AK005332|Aig1|66253|androgen-induced 1	AK084050|Aig1|66253|androgen-induced 1	BC035305|Aig1|66253|androgen-induced 1
mm9_v1_chr15_+_98885599_98885611	0.426758	NFIX.p2	AK149021|Prph|19132|peripherin	NM_001163588|Prph|19132|peripherin	NM_001163589|Prph|19132|peripherin	NM_013639|Prph|19132|peripherin	BC046291|Prph|19132|peripherin
mm9_v1_chr12_+_88488104_88488148	0.426539	NFIX.p2	AB041613|Gstz1|14874|glutathione transferase zeta 1 (maleylacetoacetate isomerase)
mm9_v1_chr16_-_20621287_20621552	0.423947	NFIX.p2	AK013788|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147550|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147736|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147745|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC157896|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	NM_028420|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2
mm9_v1_chr8_+_109555200_109555247	0.423056	NFIX.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr16_+_21423190_21423247	0.420189	NFIX.p2	NM_001081366|Vps8|209018|vacuolar protein sorting 8 homolog (S. cerevisiae)	AK122375|Vps8|209018|vacuolar protein sorting 8 homolog (S. cerevisiae)
mm9_v1_chr12_+_114214654_114214807	0.419082	NFIX.p2	NM_001145900|Btbd6|399566|BTB (POZ) domain containing 6	BC031195|Btbd6|399566|BTB (POZ) domain containing 6	NM_201646|Btbd6|399566|BTB (POZ) domain containing 6
mm9_v1_chrX_+_8469478_8469488	0.417997	NFIX.p2	NM_175327|B630019K06Rik|102941|RIKEN cDNA B630019K06 gene
mm9_v1_chr2_-_151458256_151458277	0.417595	NFIX.p2	AK032279|Snph|241727|syntaphilin	AK122262|Snph|241727|syntaphilin	NM_198214|Snph|241727|syntaphilin
mm9_v1_chr9_-_44773594_44773682	0.413622	NFIX.p2	BC025043|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028721|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC006649|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	BC021406|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK028850|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	AK172893|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)	NM_145400|Ube4a|140630|ubiquitination factor E4A, UFD2 homolog (S. cerevisiae)
mm9_v1_chr12_-_85958287_85958415	0.408864	NFIX.p2	AJ001166|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	AK028420|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	BC050102|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4	NM_008992|Abcd4|19300|ATP-binding cassette, sub-family D (ALD), member 4
mm9_v1_chr11_-_115128540_115128560	0.407082	NFIX.p2	NM_010350|Grin2c|14813|glutamate receptor, ionotropic, NMDA2C (epsilon 3)
mm9_v1_chr2_-_5635547_5635807	0.403709	NFIX.p2	AK053173|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170123|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK170777|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	NM_177343|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK147616|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr14_+_62218348_62218392	0.400821	NFIX.p2	NM_023233|Trim13|66597|tripartite motif-containing 13	AK013959|Trim13|66597|tripartite motif-containing 13	AK017850|Trim13|66597|tripartite motif-containing 13
mm9_v1_chr1_+_129101570_129101606	0.400444	NFIX.p2	AK049587|Mgat5|107895|mannoside acetylglucosaminyltransferase 5	AK030402|Mgat5|107895|mannoside acetylglucosaminyltransferase 5	AK036567|Mgat5|107895|mannoside acetylglucosaminyltransferase 5
mm9_v1_chr8_+_125897631_125897921	0.400055	NFIX.p2	BC046768|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_025804|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK045397|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK050274|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK148082|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK003180|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK088360|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_001037878|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK089964|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150232|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150918|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK151558|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK161627|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_001037877|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150942|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK151143|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK152178|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK152494|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK167837|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK168167|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	BC016130|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	BC025071|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	U94988|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK122430|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK075728|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	EU624323|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK013754|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr8_-_107871763_107871818	0.397834	NFIX.p2	AB041045|Fhod1|234686|formin homology 2 domain containing 1	BC017144|Fhod1|234686|formin homology 2 domain containing 1
mm9_v1_chr4_+_154975994_154976052	0.397404	NFIX.p2	AK145065|Slc35e2|320541|solute carrier family 35, member E2	AK157354|Slc35e2|320541|solute carrier family 35, member E2
mm9_v1_chr10_-_75807976_75808035	0.397191	NFIX.p2	AK052899|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	NM_001081419|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	AK050040|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm9_v1_chr14_+_76245144_76245241	0.393623	NFIX.p2	BC092381|Tpt1|22070|tumor protein, translationally-controlled 1
mm9_v1_chr15_+_73342989_73343101	0.393013	NFIX.p2	NM_001081066|Dennd3|105841|DENN/MADD domain containing 3	AK173046|Dennd3|105841|DENN/MADD domain containing 3	BC132389|Dennd3|105841|DENN/MADD domain containing 3	BC137791|Dennd3|105841|DENN/MADD domain containing 3	BC144912|Dennd3|105841|DENN/MADD domain containing 3
mm9_v1_chr8_-_30329898_30330071	0.389799	NFIX.p2	BC137615|Unc5d|210801|unc-5 homolog D (C. elegans)	BC144783|Unc5d|210801|unc-5 homolog D (C. elegans)	BC144784|Unc5d|210801|unc-5 homolog D (C. elegans)	BC145695|Unc5d|210801|unc-5 homolog D (C. elegans)	FJ824810|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr2_+_32462471_32462603	0.387152	NFIX.p2	NM_001025310|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	NM_016973|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK157562|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AK159158|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC036985|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	AB035123|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	BC022924|St6galnac6|50935|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm9_v1_chr16_-_44746467_44746477	0.386867	NFIX.p2	AK010979|Gtpbp8|66067|GTP-binding protein 8 (putative)	BC107216|Gtpbp8|66067|GTP-binding protein 8 (putative)	BC107217|Gtpbp8|66067|GTP-binding protein 8 (putative)	AK078242|Gtpbp8|66067|GTP-binding protein 8 (putative)	NM_001159329|Gtpbp8|66067|GTP-binding protein 8 (putative)	NM_025332|Gtpbp8|66067|GTP-binding protein 8 (putative)
mm9_v1_chr13_-_95128851_95128889	0.385339	NFIX.p2	AK041197|Gm9776|328309|predicted gene 9776	AK162882|Gm9776|328309|predicted gene 9776
mm9_v1_chr17_+_37182986_37183080	0.38453	NFIX.p2	AF114168|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1	AF008649|Gabbr1|54393|gamma-aminobutyric acid (GABA) B receptor, 1
mm9_v1_chr9_-_96789818_96789892	0.383165	NFIX.p2	AK164254|Acpl2|235534|acid phosphatase-like 2	AK083712|Acpl2|235534|acid phosphatase-like 2	BC023960|Acpl2|235534|acid phosphatase-like 2	BC036342|Acpl2|235534|acid phosphatase-like 2	NM_153420|Acpl2|235534|acid phosphatase-like 2	AK043758|Acpl2|235534|acid phosphatase-like 2	AK082059|Acpl2|235534|acid phosphatase-like 2	AK084605|Acpl2|235534|acid phosphatase-like 2	AK144699|Acpl2|235534|acid phosphatase-like 2	AK036973|Acpl2|235534|acid phosphatase-like 2
mm9_v1_chr9_-_95650735_95650795	0.379771	NFIX.p2	BC137581|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	BC144726|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	NM_011643|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U73625|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95167|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95168|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95169|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	AK038676|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1
mm9_v1_chr14_+_63741286_63741338	0.378712	NFIX.p2	AK083393|Ctsb|13030|cathepsin B	NM_007798|Ctsb|13030|cathepsin B	S69034|Ctsb|13030|cathepsin B	BC006656|Ctsb|13030|cathepsin B	AK159992|Ctsb|13030|cathepsin B	AK167361|Ctsb|13030|cathepsin B	AK170959|Ctsb|13030|cathepsin B
mm9_v1_chr16_-_4679664_4679776	0.376111	NFIX.p2	AK143624|Coro7|78885|coronin 7	AK018739|Coro7|78885|coronin 7	AK088155|Coro7|78885|coronin 7	AK041000|Coro7|78885|coronin 7	AK037894|Coro7|78885|coronin 7	BC061006|Coro7|78885|coronin 7	NM_030205|Coro7|78885|coronin 7	AK040408|Coro7|78885|coronin 7	AK150051|Coro7|78885|coronin 7	AK039585|Coro7|78885|coronin 7
mm9_v1_chr1_-_37597847_37597897	0.374792	NFIX.p2	AK155724|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr1_+_164500694_164500958	0.37424	NFIX.p2	AK018344|Vamp4|53330|vesicle-associated membrane protein 4	AK002977|Vamp4|53330|vesicle-associated membrane protein 4	AK011678|Vamp4|53330|vesicle-associated membrane protein 4	AK031151|Vamp4|53330|vesicle-associated membrane protein 4	NM_016796|Vamp4|53330|vesicle-associated membrane protein 4
mm9_v1_chr9_-_14304843_14304925	0.371053	NFIX.p2	AK155227|Kdm4d|244694|lysine (K)-specific demethylase 4D	AK030020|Kdm4d|244694|lysine (K)-specific demethylase 4D	NM_173433|Kdm4d|244694|lysine (K)-specific demethylase 4D
mm9_v1_chr8_+_112302749_112302805	0.367915	NFIX.p2	BC006691|Ap1g1|11765|adaptor protein complex AP-1, gamma 1 subunit
mm9_v1_chr7_+_139158204_139158284	0.366805	NFIX.p2	BC119380|Gpr26|233919|G protein-coupled receptor 26	BC120647|Gpr26|233919|G protein-coupled receptor 26
mm9_v1_chr8_-_97400173_97400261	0.363267	NFIX.p2	BC004705|Dok4|114255|docking protein 4	AK032352|Dok4|114255|docking protein 4	AK077612|Dok4|114255|docking protein 4	AK156485|Dok4|114255|docking protein 4	NM_053246|Dok4|114255|docking protein 4
mm9_v1_chr13_+_43880475_43880582	0.362175	NFIX.p2	NM_009856|Cd83|12522|CD83 antigen	AK075888|Cd83|12522|CD83 antigen	AK139410|Cd83|12522|CD83 antigen	AK154862|Cd83|12522|CD83 antigen	AK156386|Cd83|12522|CD83 antigen	AK171716|Cd83|12522|CD83 antigen	AK172122|Cd83|12522|CD83 antigen	AK172449|Cd83|12522|CD83 antigen	AK172515|Cd83|12522|CD83 antigen	AK172466|Cd83|12522|CD83 antigen	BC072615|Cd83|12522|CD83 antigen	AK172396|Cd83|12522|CD83 antigen	AJ245551|Cd83|12522|CD83 antigen	BC107344|Cd83|12522|CD83 antigen	BC107345|Cd83|12522|CD83 antigen	AF001036|Cd83|12522|CD83 antigen
mm9_v1_chr6_+_53989925_53989975	0.357786	NFIX.p2	AK030336|Chn2|69993|chimerin (chimaerin) 2	NM_001163640|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr17_+_34973963_34973993	0.355667	NFIX.p2	NM_001163770|Dom3z|112403|DOM-3 homolog Z (C. elegans)	NM_033613|Dom3z|112403|DOM-3 homolog Z (C. elegans)
mm9_v1_chr19_-_6128133_6128278	0.353545	NFIX.p2	BC016091|Snx15|69024|sorting nexin 15	NM_026912|Snx15|69024|sorting nexin 15
mm9_v1_chr8_-_125565896_125565896	0.352848	NFIX.p2	NM_001081379|Ankrd11|77087|ankyrin repeat domain 11
mm9_v1_chr11_-_116515361_116515394	0.351601	NFIX.p2	AK172475|Cygb|114886|cytoglobin	AK163073|Cygb|114886|cytoglobin
mm9_v1_chr13_-_48720941_48721032	0.351578	NFIX.p2	BC066081|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	NM_207232|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK132781|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK038922|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1	AK030415|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1
mm9_v1_chr11_-_119089774_119089812	0.350021	NFIX.p2	BC057634|Tbc1d16|207592|TBC1 domain family, member 16	AK047555|Tbc1d16|207592|TBC1 domain family, member 16	NM_172443|Tbc1d16|207592|TBC1 domain family, member 16
mm9_v1_chr10_+_36694535_36694557	0.347307	NFIX.p2	AB221663|Hdac2|15182|histone deacetylase 2
mm9_v1_chr8_-_124431245_124431547	0.34494	NFIX.p2	AK148134|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB023409|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB017189|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr3_+_40549475_40549540	0.33846	NFIX.p2	BC012712|Hspa4l|18415|heat shock protein 4 like	AK144225|Hspa4l|18415|heat shock protein 4 like	AK032066|Hspa4l|18415|heat shock protein 4 like	BC110662|Hspa4l|18415|heat shock protein 4 like	BC057002|Hspa4l|18415|heat shock protein 4 like	NM_011020|Hspa4l|18415|heat shock protein 4 like	D49482|Hspa4l|18415|heat shock protein 4 like
mm9_v1_chr10_+_79132113_79132186	0.337077	NFIX.p2	BC138515|Gm16517|110012|predicted gene, Gm16517	BC138516|Gm16517|110012|predicted gene, Gm16517	AF303106|Gm16517|110012|predicted gene, Gm16517	NM_148934|Gm16517|110012|predicted gene, Gm16517
mm9_v1_chr3_+_96404978_96405056	0.336648	NFIX.p2	AK143438|Lix1l|280411|Lix1-like	NM_001163170|Lix1l|280411|Lix1-like
mm9_v1_chr5_+_115392192_115392243	0.334449	NFIX.p2	AK135000|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	BC031162|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	NM_028211|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK008740|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK159360|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene
mm9_v1_chr14_-_78936606_78936676	0.333304	NFIX.p2	NM_001164503|Akap11|219181|A kinase (PRKA) anchor protein 11
mm9_v1_chr8_-_126039251_126039279	0.325753	NFIX.p2	AK013173|Dbndd1|72185|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm9_v1_chr11_+_3414792_3414875	0.323983	NFIX.p2	BC147333|Selm|114679|selenoprotein M	BC147332|Selm|114679|selenoprotein M	AK018791|Selm|114679|selenoprotein M
mm9_v1_chr11_-_90548862_90548939	0.320995	NFIX.p2	AK181527|Tom1l1|71943|target of myb1-like 1 (chicken)	AJ505007|Tom1l1|71943|target of myb1-like 1 (chicken)	AK009826|Tom1l1|71943|target of myb1-like 1 (chicken)	AK083630|Tom1l1|71943|target of myb1-like 1 (chicken)	AF395837|Tom1l1|71943|target of myb1-like 1 (chicken)	AK033712|Tom1l1|71943|target of myb1-like 1 (chicken)	NM_028011|Tom1l1|71943|target of myb1-like 1 (chicken)
mm9_v1_chr2_-_180008165_180008177	0.32093	NFIX.p2	AK050121|Cables2|252966|CDK5 and Abl enzyme substrate 2	NM_145851|Cables2|252966|CDK5 and Abl enzyme substrate 2
mm9_v1_chr14_+_33015323_33015405	0.320123	NFIX.p2	AF079557|Parg|26430|poly (ADP-ribose) glycohydrolase
mm9_v1_chr18_+_36838868_36838897	0.316896	NFIX.p2	NM_001083317|Slc35a4|67843|solute carrier family 35, member A4	NM_026404|Slc35a4|67843|solute carrier family 35, member A4
mm9_v1_chr5_-_74038829_74039027	0.315708	NFIX.p2	BC052349|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK017781|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK169403|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	NM_011890|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AB024921|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK014381|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)	AK132306|Sgcb|24051|sarcoglycan, beta (dystrophin-associated glycoprotein)
mm9_v1_chr15_-_94234743_94234766	0.314868	NFIX.p2	AK090358|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm9_v1_chr12_+_86451782_86451862	0.314742	NFIX.p2	AK158877|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	NM_030225|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK019713|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK149664|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK168570|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK171100|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK028513|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK047270|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK054053|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK169943|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	BC006702|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	CT010197|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr5_+_118426792_118426794	0.314235	NFIX.p2	AB093270|Fbxo21|231670|F-box protein 21
mm9_v1_chr9_+_56798705_56798743	0.313788	NFIX.p2	AK002717|Snupn|66069|snurportin 1	AK155315|Snupn|66069|snurportin 1	AK013151|Snupn|66069|snurportin 1	BC061258|Snupn|66069|snurportin 1	BC049638|Snupn|66069|snurportin 1	NM_178374|Snupn|66069|snurportin 1
mm9_v1_chr13_+_46764816_46764948	0.31273	NFIX.p2	AK171039|C78339|97863|expressed sequence C78339	AK141282|C78339|97863|expressed sequence C78339	NM_001033192|C78339|97863|expressed sequence C78339
mm9_v1_chr6_-_149050201_149050210	0.312594	NFIX.p2	NM_177192|Dennd5b|320560|DENN/MADD domain containing 5B
mm9_v1_chr5_-_74464390_74464465	0.312278	NFIX.p2	BC039916|Usp46|69727|ubiquitin specific peptidase 46	NM_177561|Usp46|69727|ubiquitin specific peptidase 46	AK145298|Usp46|69727|ubiquitin specific peptidase 46
mm9_v1_chr13_+_32893953_32893987	0.312084	NFIX.p2	AK082078|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr2_+_120834141_120834181	0.309894	NFIX.p2	NM_010761|Ccndbp1|17151|cyclin D-type binding-protein 1	AK144883|Ccndbp1|17151|cyclin D-type binding-protein 1	AK160205|Ccndbp1|17151|cyclin D-type binding-protein 1	AK167345|Ccndbp1|17151|cyclin D-type binding-protein 1
mm9_v1_chr13_+_67034284_67034383	0.309552	NFIX.p2	AK088048|Ptdss1|19210|phosphatidylserine synthase 1	AK036990|Ptdss1|19210|phosphatidylserine synthase 1	AK054101|Ptdss1|19210|phosphatidylserine synthase 1	AF042731|Ptdss1|19210|phosphatidylserine synthase 1
mm9_v1_chr15_-_98398066_98398161	0.309034	NFIX.p2	AF087662|Ccnt1|12455|cyclin T1	AF095640|Ccnt1|12455|cyclin T1	AF109179|Ccnt1|12455|cyclin T1	AF113951|Ccnt1|12455|cyclin T1	BC131685|Ccnt1|12455|cyclin T1	BC131686|Ccnt1|12455|cyclin T1	NM_009833|Ccnt1|12455|cyclin T1	AK083037|Ccnt1|12455|cyclin T1
mm9_v1_chr15_+_85166884_85166922	0.308932	NFIX.p2	AK003530|Atxn10|54138|ataxin 10	AK013742|Atxn10|54138|ataxin 10
mm9_v1_chr6_-_24465033_24465068	0.307191	NFIX.p2	BC137937|Iqub|214704|IQ motif and ubiquitin domain containing	BC137957|Iqub|214704|IQ motif and ubiquitin domain containing	AK133019|Iqub|214704|IQ motif and ubiquitin domain containing	AK029931|Iqub|214704|IQ motif and ubiquitin domain containing	NM_172535|Iqub|214704|IQ motif and ubiquitin domain containing
mm9_v1_chr3_-_107320831_107320842	0.305244	NFIX.p2	AK083807|Slc6a17|229706|solute carrier family 6 (neurotransmitter transporter), member 17
mm9_v1_chr2_+_120834184_120834246	0.303215	NFIX.p2	AK154285|Ccndbp1|17151|cyclin D-type binding-protein 1	BC001984|Ccndbp1|17151|cyclin D-type binding-protein 1	AK163150|Ccndbp1|17151|cyclin D-type binding-protein 1	BC005802|Ccndbp1|17151|cyclin D-type binding-protein 1	U50734|Ccndbp1|17151|cyclin D-type binding-protein 1
mm9_v1_chr14_-_37781912_37781927	0.302633	NFIX.p2	AK172153|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr5_-_113444509_113444571	0.302605	NFIX.p2	AK172513|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK048763|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK134672|Adrbk2|320129|adrenergic receptor kinase, beta 2	AK141186|Adrbk2|320129|adrenergic receptor kinase, beta 2	NM_001035531|Adrbk2|320129|adrenergic receptor kinase, beta 2	NM_177078|Adrbk2|320129|adrenergic receptor kinase, beta 2
mm9_v1_chr5_-_8622882_8622951	0.300465	NFIX.p2	BC058808|Rundc3b|242819|RUN domain containing 3B	NM_198620|Rundc3b|242819|RUN domain containing 3B
mm9_v1_chr2_+_181415021_181415025	0.299448	NFIX.p2	BC049617|Tcea2|21400|transcription elongation factor A (SII), 2	BC065786|Tcea2|21400|transcription elongation factor A (SII), 2	BC138504|Tcea2|21400|transcription elongation factor A (SII), 2	BC138505|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr5_-_139960341_139960349	0.299283	NFIX.p2	AF224494|Zfand2a|100494|zinc finger, AN1-type domain 2A
mm9_v1_chr1_+_24685377_24685468	0.299209	NFIX.p2	NM_026719|Lmbrd1|68421|LMBR1 domain containing 1	BC039053|Lmbrd1|68421|LMBR1 domain containing 1
mm9_v1_chr9_-_77956353_77956477	0.294975	NFIX.p2	AK018482|Fbxo9|71538|f-box protein 9	AB041585|Fbxo9|71538|f-box protein 9	BC020074|Fbxo9|71538|f-box protein 9	NM_023605|Fbxo9|71538|f-box protein 9
mm9_v1_chr1_+_173319048_173319419	0.293084	NFIX.p2	AK147757|Arhgap30|226652|Rho GTPase activating protein 30	NM_001005508|Arhgap30|226652|Rho GTPase activating protein 30	AK156351|Arhgap30|226652|Rho GTPase activating protein 30	AK030911|Arhgap30|226652|Rho GTPase activating protein 30	BC082573|Arhgap30|226652|Rho GTPase activating protein 30	AK031319|Arhgap30|226652|Rho GTPase activating protein 30
mm9_v1_chr18_-_40379000_40379023	0.28922	NFIX.p2	AK160270|Yipf5|67180|Yip1 domain family, member 5	AK153123|Yipf5|67180|Yip1 domain family, member 5	AK007671|Yipf5|67180|Yip1 domain family, member 5	AK010089|Yipf5|67180|Yip1 domain family, member 5	AK152440|Yipf5|67180|Yip1 domain family, member 5	AK167526|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr5_-_110715166_110715186	0.28907	NFIX.p2	NM_008993|Pxmp2|19301|peroxisomal membrane protein 2
mm9_v1_chr8_-_81923268_81923340	0.28715	NFIX.p2	AK017583|Smad1|17125|MAD homolog 1 (Drosophila)	AK034045|Smad1|17125|MAD homolog 1 (Drosophila)	AK054104|Smad1|17125|MAD homolog 1 (Drosophila)
mm9_v1_chr8_+_114535258_114535298	0.285819	NFIX.p2	NM_020584|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK161452|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	BC017641|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK148537|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein	AK148508|Terf2ip|57321|telomeric repeat binding factor 2, interacting protein
mm9_v1_chr9_+_20447739_20447785	0.282702	NFIX.p2	AK051149|Ubl5|66177|ubiquitin-like 5	NM_025401|Ubl5|66177|ubiquitin-like 5	AK040449|Ubl5|66177|ubiquitin-like 5
mm9_v1_chr4_-_147662005_147662073	0.280425	NFIX.p2	BC070441|Ptchd2|242748|patched domain containing 2	BC072569|Ptchd2|242748|patched domain containing 2	AK090326|Ptchd2|242748|patched domain containing 2	NM_001083342|Ptchd2|242748|patched domain containing 2
mm9_v1_chr2_-_160698733_160698735	0.278024	NFIX.p2	
mm9_v1_chr5_-_137774755_137774840	0.27755	NFIX.p2	AK154118|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9	NM_031406|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9	AK050658|Slc12a9|83704|solute carrier family 12 (potassium/chloride transporters), member 9
mm9_v1_chr9_+_122714664_122714720	0.276253	NFIX.p2	NM_001013405|D9Ertd402e|382117|DNA segment, Chr 9, ERATO Doi 402, expressed	BC080690|D9Ertd402e|382117|DNA segment, Chr 9, ERATO Doi 402, expressed
mm9_v1_chr7_+_64845887_64845914	0.274596	NFIX.p2	AK083107|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_001038701|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr4_+_101180625_101180708	0.274344	NFIX.p2	AK147570|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK147637|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr9_+_107465568_107465700	0.273572	NFIX.p2	AK082684|Tusc2|80385|tumor suppressor candidate 2	BC048477|Tusc2|80385|tumor suppressor candidate 2	NM_019742|Tusc2|80385|tumor suppressor candidate 2	AK004430|Tusc2|80385|tumor suppressor candidate 2	AF123387|Tusc2|80385|tumor suppressor candidate 2
mm9_v1_chr14_-_32019850_32019896	0.272975	NFIX.p2	AK004628|Nisch|64652|nischarin	AK014314|Nisch|64652|nischarin	AK036043|Nisch|64652|nischarin	AK049791|Nisch|64652|nischarin	AK086880|Nisch|64652|nischarin	AK088377|Nisch|64652|nischarin	BC066838|Nisch|64652|nischarin	BC003270|Nisch|64652|nischarin	AK054022|Nisch|64652|nischarin	AK160990|Nisch|64652|nischarin	AK080441|Nisch|64652|nischarin
mm9_v1_chr17_-_23814399_23814413	0.271099	NFIX.p2	BC025860|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AF156164|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AK005382|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a	AK005530|Tnfrsf12a|27279|tumor necrosis factor receptor superfamily, member 12a
mm9_v1_chr7_-_97605681_97605720	0.270323	NFIX.p2	BC023171|Tmem126a|66271|transmembrane protein 126A	AK005343|Tmem126a|66271|transmembrane protein 126A	AK050267|Tmem126a|66271|transmembrane protein 126A	AK007559|Tmem126a|66271|transmembrane protein 126A	NM_025460|Tmem126a|66271|transmembrane protein 126A
mm9_v1_chr5_+_134575561_134575653	0.269245	NFIX.p2	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr17_-_45686604_45686625	0.267656	NFIX.p2	BC079879|Tmem151b|210573|transmembrane protein 151B	NM_001013749|Tmem151b|210573|transmembrane protein 151B
mm9_v1_chr7_+_123647881_123647969	0.266817	NFIX.p2	AJ222586|Nucb2|53322|nucleobindin 2	NM_001130479|Nucb2|53322|nucleobindin 2	NM_016773|Nucb2|53322|nucleobindin 2	AK145934|Nucb2|53322|nucleobindin 2	BC010459|Nucb2|53322|nucleobindin 2
mm9_v1_chr5_-_141178143_141178224	0.264472	NFIX.p2	AK006472|Iqce|74239|IQ motif containing E	BC065128|Iqce|74239|IQ motif containing E
mm9_v1_chr12_-_85749901_85749994	0.262824	NFIX.p2	AK085871|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK088455|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK081435|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK037736|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK163688|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK031581|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK036641|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK045828|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	AK080265|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	NM_001026214|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5	NM_007647|Entpd5|12499|ectonucleoside triphosphate diphosphohydrolase 5
mm9_v1_chr5_-_31456576_31456630	0.262548	NFIX.p2	BC013452|Mpv17|17527|MpV17 mitochondrial inner membrane protein	AK040477|Mpv17|17527|MpV17 mitochondrial inner membrane protein	M36411|Mpv17|17527|MpV17 mitochondrial inner membrane protein	NM_008622|Mpv17|17527|MpV17 mitochondrial inner membrane protein
mm9_v1_chr19_+_22213516_22213606	0.261776	NFIX.p2	AK173218|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544532|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544533|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544534|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544535|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	AJ544536|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035239|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035240|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035241|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035242|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3	NM_001035243|Trpm3|226025|transient receptor potential cation channel, subfamily M, member 3
mm9_v1_chr16_+_32099870_32099906	0.261062	NFIX.p2	AK005324|1500031L02Rik|66994|RIKEN cDNA 1500031L02 gene	NM_025892|1500031L02Rik|66994|RIKEN cDNA 1500031L02 gene	AK007713|1500031L02Rik|66994|RIKEN cDNA 1500031L02 gene
mm9_v1_chr15_+_10107168_10107535	0.260028	NFIX.p2	AK054381|Prlr|19116|prolactin receptor	AK143335|Prlr|19116|prolactin receptor	AK050317|Prlr|19116|prolactin receptor	BC005555|Prlr|19116|prolactin receptor	BC006652|Prlr|19116|prolactin receptor	AK081676|Prlr|19116|prolactin receptor
mm9_v1_chr10_-_81063566_81063644	0.258936	NFIX.p2	BC023315|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)	AK135768|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)	AF145957|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)	NM_053254|Tle6|114606|transducin-like enhancer of split 6, homolog of Drosophila E(spl)
mm9_v1_chr1_-_52784161_52784228	0.258877	NFIX.p2	AK035995|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_133829|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_178081|Mfsd6|98682|major facilitator superfamily domain containing 6	AK171946|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr6_-_124807704_124807729	0.258258	NFIX.p2	AJ441086|Leprel2|14789|leprecan-like 2	AY463530|Leprel2|14789|leprecan-like 2	NM_013534|Leprel2|14789|leprecan-like 2
mm9_v1_chr18_+_21160434_21160595	0.256952	NFIX.p2	AK136138|Rnf138|56515|ring finger protein 138	AK004238|Rnf138|56515|ring finger protein 138	AK010486|Rnf138|56515|ring finger protein 138	BC003712|Rnf138|56515|ring finger protein 138	AK013419|Rnf138|56515|ring finger protein 138
mm9_v1_chr17_+_22099525_22099724	0.250586	NFIX.p2	AK036434|Zfp943|74670|zinc finger prtoein 943	NM_001025373|Zfp943|74670|zinc finger prtoein 943	AK015297|Zfp943|74670|zinc finger prtoein 943	BC038865|Zfp943|74670|zinc finger prtoein 943	BC066031|Zfp943|74670|zinc finger prtoein 943
mm9_v1_chr9_-_8042801_8042822	0.249875	NFIX.p2	BC115525|9230110C19Rik|234912|RIKEN cDNA 9230110C19 gene	BC127165|9230110C19Rik|234912|RIKEN cDNA 9230110C19 gene	BC133669|9230110C19Rik|234912|RIKEN cDNA 9230110C19 gene	AK033793|9230110C19Rik|234912|RIKEN cDNA 9230110C19 gene	NM_199017|9230110C19Rik|234912|RIKEN cDNA 9230110C19 gene
mm9_v1_chr3_+_88425011_88425071	0.249544	NFIX.p2	NM_008487|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK156379|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AF177032|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	U28495|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr2_-_29979973_29980080	0.249478	NFIX.p2	BC048924|Zer1|227693|zer-1 homolog (C. elegans)	NM_178694|Zer1|227693|zer-1 homolog (C. elegans)	AK087046|Zer1|227693|zer-1 homolog (C. elegans)	AK081355|Zer1|227693|zer-1 homolog (C. elegans)	AK048853|Zer1|227693|zer-1 homolog (C. elegans)	BC057021|Zer1|227693|zer-1 homolog (C. elegans)	AK155401|Zer1|227693|zer-1 homolog (C. elegans)
mm9_v1_chr1_-_192886758_192886821	0.249179	NFIX.p2	AK156071|Tatdn3|68972|TatD DNase domain containing 3	AK005193|Tatdn3|68972|TatD DNase domain containing 3	BC061248|Tatdn3|68972|TatD DNase domain containing 3	NM_001163421|Tatdn3|68972|TatD DNase domain containing 3	NM_001163422|Tatdn3|68972|TatD DNase domain containing 3	NM_026895|Tatdn3|68972|TatD DNase domain containing 3
mm9_v1_chr14_+_67487686_67487690	0.249082	NFIX.p2	AK135012|Gm5464|432870|predicted gene 5464	NM_001034881|Gm5464|432870|predicted gene 5464	BC147346|Gm5464|432870|predicted gene 5464	BC147347|Gm5464|432870|predicted gene 5464
mm9_v1_chr18_-_33623527_33623549	0.247277	NFIX.p2	AK020629|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr19_-_10630727_10630727	0.247133	NFIX.p2	AK003740|Tmem216|68642|transmembrane protein 216	NM_026798|Tmem216|68642|transmembrane protein 216
mm9_v1_chr14_-_33015012_33015098	0.247084	NFIX.p2	BC062963|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AK013976|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC132019|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC132319|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC096669|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AK146516|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC037022|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC069903|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AB021122|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	NM_016897|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)
mm9_v1_chr10_+_79422870_79422988	0.243352	NFIX.p2	AK087505|Wdr18|216156|WD repeat domain 18	AK133716|Wdr18|216156|WD repeat domain 18	BC095984|Wdr18|216156|WD repeat domain 18	NM_175450|Wdr18|216156|WD repeat domain 18	AK032251|Wdr18|216156|WD repeat domain 18	AK050106|Wdr18|216156|WD repeat domain 18	AK160713|Wdr18|216156|WD repeat domain 18	AK163465|Wdr18|216156|WD repeat domain 18	AK166113|Wdr18|216156|WD repeat domain 18	AK168691|Wdr18|216156|WD repeat domain 18	AK082695|Wdr18|216156|WD repeat domain 18
mm9_v1_chr19_-_6915038_6915131	0.242603	NFIX.p2	AK195314|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AF074714|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	NM_019924|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK089467|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	AK154674|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4	BC012964|Rps6ka4|56613|ribosomal protein S6 kinase, polypeptide 4
mm9_v1_chr7_+_106529922_106529967	0.239998	NFIX.p2	AK154771|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr11_-_60166405_60166439	0.239545	NFIX.p2	AK166040|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039092|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_001039093|Tom1l2|216810|target of myb1-like 2 (chicken)	NM_153080|Tom1l2|216810|target of myb1-like 2 (chicken)
mm9_v1_chr3_-_80717517_80717574	0.238986	NFIX.p2	BC027094|Glrb|14658|glycine receptor, beta subunit	BC037605|Glrb|14658|glycine receptor, beta subunit	NM_010298|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr14_-_98568962_98569016	0.237389	NFIX.p2	AK139060|Dach1|13134|dachshund 1 (Drosophila)
mm9_v1_chr2_-_38860622_38860699	0.237382	NFIX.p2	BC094634|Rpl35|66489|ribosomal protein L35	BC025884|Rpl35|66489|ribosomal protein L35	BC125652|Rpl35|66489|ribosomal protein L35	BC125656|Rpl35|66489|ribosomal protein L35	AK151707|Rpl35|66489|ribosomal protein L35	AK012335|Rpl35|66489|ribosomal protein L35	AK169650|Rpl35|66489|ribosomal protein L35	AK010639|Rpl35|66489|ribosomal protein L35	NM_025592|Rpl35|66489|ribosomal protein L35
mm9_v1_chr17_+_34974118_34974132	0.234129	NFIX.p2	
mm9_v1_chr14_+_22569752_22569797	0.234081	NFIX.p2	AK006211|Samd8|67630|sterile alpha motif domain containing 8	NM_026283|Samd8|67630|sterile alpha motif domain containing 8	BC116745|Samd8|67630|sterile alpha motif domain containing 8	BC116747|Samd8|67630|sterile alpha motif domain containing 8	AK015593|Samd8|67630|sterile alpha motif domain containing 8	BC100476|Samd8|67630|sterile alpha motif domain containing 8
mm9_v1_chr7_-_31514527_31514579	0.233191	NFIX.p2	AK010168|Tmem147|69804|transmembrane protein 147	AK160267|Tmem147|69804|transmembrane protein 147	NM_027215|Tmem147|69804|transmembrane protein 147
mm9_v1_chr4_+_73897782_73897907	0.233166	NFIX.p2	AK173023|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_144787|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144890|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144103|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK081769|Kdm4c|76804|lysine (K)-specific demethylase 4C	BC020180|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK048092|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK042792|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK053104|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr8_+_74135114_74135308	0.232997	NFIX.p2	BC018287|Glt25d1|234407|glycosyltransferase 25 domain containing 1
mm9_v1_chr9_-_75458918_75458929	0.231406	NFIX.p2	AK018223|Tmod2|50876|tropomodulin 2
mm9_v1_chr12_-_113205172_113205207	0.231065	NFIX.p2	BC059719|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	AK008333|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	NM_027360|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr12_+_35731888_35731920	0.230762	NFIX.p2	AK148157|Snx13|217463|sorting nexin 13	AK170737|Snx13|217463|sorting nexin 13	BC056394|Snx13|217463|sorting nexin 13
mm9_v1_chr6_+_4551065_4551157	0.22869	NFIX.p2	AB091829|Casd1|213819|CAS1 domain containing 1	NM_145398|Casd1|213819|CAS1 domain containing 1	BC125377|Casd1|213819|CAS1 domain containing 1	BC125379|Casd1|213819|CAS1 domain containing 1
mm9_v1_chr6_-_91066773_91066797	0.228321	NFIX.p2	AK173056|Nup210|54563|nucleoporin 210	AF113751|Nup210|54563|nucleoporin 210	AK077812|Nup210|54563|nucleoporin 210
mm9_v1_chr11_+_116976475_116976498	0.226786	NFIX.p2	AK047396|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166506|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_001166507|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)	NM_028777|Sec14l1|74136|SEC14-like 1 (S. cerevisiae)
mm9_v1_chr8_+_112302811_112302862	0.226082	NFIX.p2	
mm9_v1_chr6_-_39327637_39327722	0.225019	NFIX.p2	BC099673|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK076213|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK077836|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK167716|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	BC005744|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	AK145242|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	NM_028123|Slc37a3|72144|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm9_v1_chrX_+_130593711_130593811	0.224217	NFIX.p2	AK049971|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	AK032817|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	AF317552|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	EU616680|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	EU616681|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	EU616682|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2	BC036719|Cstf2|108062|cleavage stimulation factor, 3' pre-RNA subunit 2
mm9_v1_chr11_+_3414884_3414917	0.22337	NFIX.p2	AK079358|Selm|114679|selenoprotein M	AY043488|Selm|114679|selenoprotein M	AK046034|Selm|114679|selenoprotein M	AK035312|Selm|114679|selenoprotein M	AK086243|Selm|114679|selenoprotein M
mm9_v1_chr18_+_37911236_37911432	0.222259	NFIX.p2	BC066823|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	AY013809|Pcdhgb7|93704|protocadherin gamma subfamily B, 7	NM_033579|Pcdhgb7|93704|protocadherin gamma subfamily B, 7
mm9_v1_chr19_+_46782153_46782204	0.218624	NFIX.p2	AK009814|As3mt|57344|arsenic (+3 oxidation state) methyltransferase
mm9_v1_chr3_-_63733328_63733393	0.218101	NFIX.p2	BC125500|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene	BC132160|E130311K13Rik|329659|RIKEN cDNA E130311K13 gene
mm9_v1_chr8_+_73430048_73430142	0.21805	NFIX.p2	
mm9_v1_chr12_+_66018897_66018897	0.216986	NFIX.p2	BC099503|Gm527|217648|predicted gene 527	NM_001025605|Gm527|217648|predicted gene 527
mm9_v1_chr2_-_181022670_181022690	0.214935	NFIX.p2	BC059066|Gmeb2|229004|glucocorticoid modulatory element binding protein 2	NM_198169|Gmeb2|229004|glucocorticoid modulatory element binding protein 2
mm9_v1_chr6_+_34426288_34426319	0.211052	NFIX.p2	AK006315|Bpgm|12183|2,3-bisphosphoglycerate mutase	AK043412|Bpgm|12183|2,3-bisphosphoglycerate mutase
mm9_v1_chr11_-_70034477_70034547	0.210112	NFIX.p2	AK028143|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	AK028759|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	NM_172371|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm9_v1_chr6_-_113451811_113451890	0.207866	NFIX.p2	BC058349|Prrt3|210673|proline-rich transmembrane protein 3	NM_172487|Prrt3|210673|proline-rich transmembrane protein 3	AK136854|Prrt3|210673|proline-rich transmembrane protein 3	AK045491|Prrt3|210673|proline-rich transmembrane protein 3	AK045678|Prrt3|210673|proline-rich transmembrane protein 3
mm9_v1_chr11_-_70501430_70501474	0.207757	NFIX.p2	AK039670|Camta2|216874|calmodulin binding transcription activator 2	BC049133|Camta2|216874|calmodulin binding transcription activator 2	BC056395|Camta2|216874|calmodulin binding transcription activator 2	AK169118|Camta2|216874|calmodulin binding transcription activator 2	AK150186|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr17_+_34766489_34766633	0.207543	NFIX.p2	BC128489|Prrt1|260297|proline-rich transmembrane protein 1	NM_030890|Prrt1|260297|proline-rich transmembrane protein 1	BC115512|Prrt1|260297|proline-rich transmembrane protein 1	BC115513|Prrt1|260297|proline-rich transmembrane protein 1
mm9_v1_chr17_+_31523178_31523231	0.207214	NFIX.p2	NM_001163748|Pde9a|18585|phosphodiesterase 9A	NM_008804|Pde9a|18585|phosphodiesterase 9A	AK030509|Pde9a|18585|phosphodiesterase 9A	BC061163|Pde9a|18585|phosphodiesterase 9A	AK168143|Pde9a|18585|phosphodiesterase 9A	BC025882|Pde9a|18585|phosphodiesterase 9A	AF031147|Pde9a|18585|phosphodiesterase 9A	AF068247|Pde9a|18585|phosphodiesterase 9A	BC038675|Pde9a|18585|phosphodiesterase 9A	BC046915|Pde9a|18585|phosphodiesterase 9A
mm9_v1_chr1_-_30930538_30930588	0.20695	NFIX.p2	AK045780|Phf3|213109|PHD finger protein 3
mm9_v1_chr12_-_71212591_71212711	0.205404	NFIX.p2	AK141891|Nin|18080|ninein	AK134860|Nin|18080|ninein
mm9_v1_chr6_-_88577424_88577443	0.20221	NFIX.p2	AK014702|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_001142724|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	NM_029013|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12	AK016973|Kbtbd12|74589|kelch repeat and BTB (POZ) domain containing 12
mm9_v1_chr8_-_81923366_81923445	0.200601	NFIX.p2	BC058693|Smad1|17125|MAD homolog 1 (Drosophila)	NM_008539|Smad1|17125|MAD homolog 1 (Drosophila)	AK084505|Smad1|17125|MAD homolog 1 (Drosophila)	AK158509|Smad1|17125|MAD homolog 1 (Drosophila)
mm9_v1_chr17_-_25252813_25252921	0.20018	NFIX.p2	NM_027880|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	BC080713|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	AK141388|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	BC013127|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	AK143827|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)	NM_001163661|Telo2|71718|TEL2, telomere maintenance 2, homolog (S. cerevisiae)
mm9_v1_chr8_+_73429830_73429980	0.198635	NFIX.p2	BC150729|Mtap1s|270058|microtubule-associated protein 1S	NM_173013|Mtap1s|270058|microtubule-associated protein 1S	AK082854|Mtap1s|270058|microtubule-associated protein 1S	AK042159|Mtap1s|270058|microtubule-associated protein 1S	AK032300|Mtap1s|270058|microtubule-associated protein 1S	DQ387862|Mtap1s|270058|microtubule-associated protein 1S	BC058166|Mtap1s|270058|microtubule-associated protein 1S	BC079598|Mtap1s|270058|microtubule-associated protein 1S
mm9_v1_chr8_+_3515373_3515441	0.198021	NFIX.p2	AF173829|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_001122818|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_015801|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK040720|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC054789|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC056999|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr10_+_76978643_76978683	0.197777	NFIX.p2	AK013159|2810425M01Rik|69972|RIKEN cDNA 2810425M01 gene
mm9_v1_chr18_+_66033139_66033147	0.196988	NFIX.p2	AK139345|Grp|225642|gastrin releasing peptide	AK133508|Grp|225642|gastrin releasing peptide	BC024515|Grp|225642|gastrin releasing peptide	NM_175012|Grp|225642|gastrin releasing peptide
mm9_v1_chr9_+_120213011_120213097	0.195156	NFIX.p2	AK148358|Myrip|245049|myosin VIIA and Rab interacting protein
mm9_v1_chr5_-_124777828_124777881	0.194415	NFIX.p2	AK081178|Mphosph9|269702|M-phase phosphoprotein 9	AK132598|Mphosph9|269702|M-phase phosphoprotein 9	AK084586|Mphosph9|269702|M-phase phosphoprotein 9
mm9_v1_chr12_-_35591643_35591657	0.194137	NFIX.p2	AK087563|Hdac9|79221|histone deacetylase 9
mm9_v1_chr17_-_15963372_15963555	0.193422	NFIX.p2	BC138890|Rgmb|68799|RGM domain family, member B	AK035713|Rgmb|68799|RGM domain family, member B	AK046637|Rgmb|68799|RGM domain family, member B	AK080819|Rgmb|68799|RGM domain family, member B	BC096024|Rgmb|68799|RGM domain family, member B	AK030386|Rgmb|68799|RGM domain family, member B	AK047390|Rgmb|68799|RGM domain family, member B	BC030405|Rgmb|68799|RGM domain family, member B	AJ557514|Rgmb|68799|RGM domain family, member B	NM_178615|Rgmb|68799|RGM domain family, member B
mm9_v1_chr4_+_124559028_124559098	0.190967	NFIX.p2	NM_177671|Epha10|230735|Eph receptor A10	AK039700|Epha10|230735|Eph receptor A10	BC116991|Epha10|230735|Eph receptor A10	BC119084|Epha10|230735|Eph receptor A10
mm9_v1_chr13_-_100785524_100785589	0.190748	NFIX.p2	BC027640|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146865|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK145564|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146844|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141193|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141194|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK132265|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr16_-_44746455_44746462	0.190658	NFIX.p2	AK147840|Gtpbp8|66067|GTP-binding protein 8 (putative)	AK002771|Gtpbp8|66067|GTP-binding protein 8 (putative)
mm9_v1_chr14_-_56209895_56209937	0.189011	NFIX.p2	NM_001029855|Psme2|19188|proteasome (prosome, macropain) 28 subunit, beta
mm9_v1_chr11_+_105829364_105829480	0.188412	NFIX.p2	BC083109|Ace|11421|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm9_v1_chr5_+_136165013_136165105	0.187296	NFIX.p2	BC003240|Por|18984|P450 (cytochrome) oxidoreductase	AK131867|Por|18984|P450 (cytochrome) oxidoreductase	BC031463|Por|18984|P450 (cytochrome) oxidoreductase	D17571|Por|18984|P450 (cytochrome) oxidoreductase	NM_008898|Por|18984|P450 (cytochrome) oxidoreductase	AK192112|Por|18984|P450 (cytochrome) oxidoreductase
mm9_v1_chr14_+_35124004_35124021	0.184381	NFIX.p2	AK075971|Glud1|14661|glutamate dehydrogenase 1	X57024|Glud1|14661|glutamate dehydrogenase 1	AK089152|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr1_-_25886551_25886551	0.184154	NFIX.p2	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr7_+_148748102_148748107	0.182758	NFIX.p2	X14972|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr15_+_81066029_81066052	0.182611	NFIX.p2	AK134867|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr17_-_26206459_26206461	0.182273	NFIX.p2	AK080103|Rab11fip3|215445|RAB11 family interacting protein 3 (class II)
mm9_v1_chr4_+_119212261_119212343	0.181695	NFIX.p2	AK082840|Foxj3|230700|forkhead box J3	AK171564|Foxj3|230700|forkhead box J3	AK129271|Foxj3|230700|forkhead box J3	BC058231|Foxj3|230700|forkhead box J3	NM_172699|Foxj3|230700|forkhead box J3	AK133640|Foxj3|230700|forkhead box J3	AK163298|Foxj3|230700|forkhead box J3	AK086875|Foxj3|230700|forkhead box J3	AK139508|Foxj3|230700|forkhead box J3
mm9_v1_chr13_+_13529868_13529883	0.180199	NFIX.p2	NM_010917|Nid1|18073|nidogen 1	BC052939|Nid1|18073|nidogen 1
mm9_v1_chr1_+_168309448_168309516	0.179241	NFIX.p2	AK050649|Tada1|27878|transcriptional adaptor 1	BC002307|Tada1|27878|transcriptional adaptor 1
mm9_v1_chr14_-_70689083_70689258	0.178889	NFIX.p2	BC046617|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	BC141079|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	BC145347|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	M81475|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	NM_008915|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	AK015002|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform
mm9_v1_chr18_-_40378992_40378996	0.17764	NFIX.p2	BC055301|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr8_-_73000776_73000872	0.176936	NFIX.p2	AK189302|Klhl26|234378|kelch-like 26 (Drosophila)	AK182438|Klhl26|234378|kelch-like 26 (Drosophila)	AK048601|Klhl26|234378|kelch-like 26 (Drosophila)	BC098185|Klhl26|234378|kelch-like 26 (Drosophila)	AK163170|Klhl26|234378|kelch-like 26 (Drosophila)	AK049946|Klhl26|234378|kelch-like 26 (Drosophila)	NM_001122830|Klhl26|234378|kelch-like 26 (Drosophila)	NM_178771|Klhl26|234378|kelch-like 26 (Drosophila)	AK041089|Klhl26|234378|kelch-like 26 (Drosophila)	BC025484|Klhl26|234378|kelch-like 26 (Drosophila)	AK036321|Klhl26|234378|kelch-like 26 (Drosophila)
mm9_v1_chr6_-_38825815_38825951	0.17638	NFIX.p2	AF333791|Hipk2|15258|homeodomain interacting protein kinase 2	AF333792|Hipk2|15258|homeodomain interacting protein kinase 2	AF273680|Hipk2|15258|homeodomain interacting protein kinase 2	BC031904|Hipk2|15258|homeodomain interacting protein kinase 2	AF170301|Hipk2|15258|homeodomain interacting protein kinase 2	AF170302|Hipk2|15258|homeodomain interacting protein kinase 2	AF077659|Hipk2|15258|homeodomain interacting protein kinase 2
mm9_v1_chr7_+_71646515_71646591	0.175727	NFIX.p2	BC057620|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2	NM_007461|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2
mm9_v1_chr4_-_117354829_117354891	0.175111	NFIX.p2	AF438610|Dmap1|66233|DNA methyltransferase 1-associated protein 1	NM_023178|Dmap1|66233|DNA methyltransferase 1-associated protein 1	AK012055|Dmap1|66233|DNA methyltransferase 1-associated protein 1	AK005270|Dmap1|66233|DNA methyltransferase 1-associated protein 1
mm9_v1_chr2_+_25356320_25356408	0.174985	NFIX.p2	AF176520|Fbxw5|30839|F-box and WD-40 domain protein 5	BC010776|Fbxw5|30839|F-box and WD-40 domain protein 5	AK154911|Fbxw5|30839|F-box and WD-40 domain protein 5
mm9_v1_chr7_+_129276547_129276617	0.173892	NFIX.p2	AK076738|Dctn5|59288|dynactin 5	NM_021608|Dctn5|59288|dynactin 5	BC005671|Dctn5|59288|dynactin 5	AK010238|Dctn5|59288|dynactin 5	AK168983|Dctn5|59288|dynactin 5	AK076100|Dctn5|59288|dynactin 5	AK151193|Dctn5|59288|dynactin 5	AK151876|Dctn5|59288|dynactin 5	BC010834|Dctn5|59288|dynactin 5	BC092273|Dctn5|59288|dynactin 5	AK146123|Dctn5|59288|dynactin 5	AK145958|Dctn5|59288|dynactin 5	AF190795|Dctn5|59288|dynactin 5	AK051957|Dctn5|59288|dynactin 5
mm9_v1_chr5_+_93696645_93696792	0.173483	NFIX.p2	BC060180|Ccng2|12452|cyclin G2	BC088980|Ccng2|12452|cyclin G2
mm9_v1_chr15_-_32174187_32174189	0.173427	NFIX.p2	AK007719|Snord123|66835|small nucleolar RNA, C/D box 123
mm9_v1_chr16_+_31428882_31428885	0.169219	NFIX.p2	AK009575|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr6_-_85911593_85911675	0.169033	NFIX.p2	BC067028|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK040232|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK079991|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK081629|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	AK088941|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	NM_028099|Dusp11|72102|dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
mm9_v1_chr17_+_33226311_33226311	0.168865	NFIX.p2	NM_001024950|Zfp563|240068|zinc finger protein 563
mm9_v1_chr8_+_107115349_107115367	0.165779	NFIX.p2	NM_001024606|Pdp2|382051|pyruvate dehyrogenase phosphatase catalytic subunit 2
mm9_v1_chr11_+_100181296_100181331	0.164999	NFIX.p2	AK150813|Eif1|20918|eukaryotic translation initiation factor 1	AK151575|Eif1|20918|eukaryotic translation initiation factor 1	AK152194|Eif1|20918|eukaryotic translation initiation factor 1	AK169763|Eif1|20918|eukaryotic translation initiation factor 1	AK148032|Eif1|20918|eukaryotic translation initiation factor 1	AK151070|Eif1|20918|eukaryotic translation initiation factor 1	BC003463|Eif1|20918|eukaryotic translation initiation factor 1	NM_011508|Eif1|20918|eukaryotic translation initiation factor 1	BC081429|Eif1|20918|eukaryotic translation initiation factor 1	AF129888|Eif1|20918|eukaryotic translation initiation factor 1	BC010791|Eif1|20918|eukaryotic translation initiation factor 1	BC096691|Eif1|20918|eukaryotic translation initiation factor 1	BC096656|Eif1|20918|eukaryotic translation initiation factor 1
mm9_v1_chr3_+_32635972_32635987	0.164869	NFIX.p2	AK088061|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	AK018562|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	AK002279|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	AK005521|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	AK013223|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	AK004372|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	NM_025316|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5
mm9_v1_chr2_+_80155622_80155622	0.164333	NFIX.p2	AK016269|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10	NM_024181|Dnajc10|66861|DnaJ (Hsp40) homolog, subfamily C, member 10
mm9_v1_chr8_-_124431559_124431577	0.16388	NFIX.p2	BC026131|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr13_+_55254169_55254235	0.162793	NFIX.p2	AK084850|Fgfr4|14186|fibroblast growth factor receptor 4	NM_008011|Fgfr4|14186|fibroblast growth factor receptor 4	AK085723|Fgfr4|14186|fibroblast growth factor receptor 4	X59927|Fgfr4|14186|fibroblast growth factor receptor 4
mm9_v1_chr15_-_43701569_43701581	0.162453	NFIX.p2	BC076589|Tmem74|239408|transmembrane protein 74	AK046420|Tmem74|239408|transmembrane protein 74	NM_175502|Tmem74|239408|transmembrane protein 74	AK045145|Tmem74|239408|transmembrane protein 74
mm9_v1_chr19_+_17030600_17030608	0.161867	NFIX.p2	AK165582|Prune2|353211|prune homolog 2 (Drosophila)	AK020727|Prune2|353211|prune homolog 2 (Drosophila)	AK039241|Prune2|353211|prune homolog 2 (Drosophila)	AK165913|Prune2|353211|prune homolog 2 (Drosophila)	NM_181348|Prune2|353211|prune homolog 2 (Drosophila)
mm9_v1_chr19_-_46423443_46423480	0.161855	NFIX.p2	AK009611|2310034G01Rik|75579|RIKEN cDNA 2310034G01 gene	AK051784|2310034G01Rik|75579|RIKEN cDNA 2310034G01 gene
mm9_v1_chr13_-_48720824_48720904	0.159705	NFIX.p2	AK053480|Ptpdc1|218232|protein tyrosine phosphatase domain containing 1
mm9_v1_chr11_-_66866062_66866095	0.159529	NFIX.p2	AK145941|2310004I24Rik|66358|RIKEN cDNA 2310004I24 gene	BC004029|2310004I24Rik|66358|RIKEN cDNA 2310004I24 gene	AK010520|2310004I24Rik|66358|RIKEN cDNA 2310004I24 gene	AK009142|2310004I24Rik|66358|RIKEN cDNA 2310004I24 gene
mm9_v1_chr14_+_34736772_34736788	0.15884	NFIX.p2	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr7_+_134985435_134985552	0.157096	NFIX.p2	BC005791|Stx4a|20909|syntaxin 4A (placental)	U76832|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr7_+_117266253_117266328	0.157067	NFIX.p2	AK039572|Wee1|22390|WEE 1 homolog 1 (S. pombe)
mm9_v1_chr7_-_31514445_31514522	0.156384	NFIX.p2	AK008089|Tmem147|69804|transmembrane protein 147	AK007753|Tmem147|69804|transmembrane protein 147	BC147300|Tmem147|69804|transmembrane protein 147	BC147301|Tmem147|69804|transmembrane protein 147
mm9_v1_chr7_+_88005861_88005865	0.155846	NFIX.p2	AK147779|Zscan2|22691|zinc finger and SCAN domain containing 2
mm9_v1_chr1_-_108610861_108610866	0.154693	NFIX.p2	AK049473|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_009741|Bcl2|12043|B-cell leukemia/lymphoma 2	NM_177410|Bcl2|12043|B-cell leukemia/lymphoma 2
mm9_v1_chr18_+_37901716_37901894	0.154233	NFIX.p2	BC054556|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	NM_033578|Pcdhgb6|93703|protocadherin gamma subfamily B, 6	AY013808|Pcdhgb6|93703|protocadherin gamma subfamily B, 6
mm9_v1_chr12_+_110806715_110806837	0.154167	NFIX.p2	AK148955|Meg3|17263|maternally expressed 3
mm9_v1_chr2_+_181415029_181415076	0.154095	NFIX.p2	AB010271|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr10_-_76881008_76881043	0.153204	NFIX.p2	AK138318|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AK147298|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_001024837|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_130895|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr19_-_7015923_7016010	0.152748	NFIX.p2	BC048078|Gpr137|107173|G protein-coupled receptor 137	AK170308|Gpr137|107173|G protein-coupled receptor 137	NM_001177362|Gpr137|107173|G protein-coupled receptor 137
mm9_v1_chr7_-_106289651_106289675	0.152154	NFIX.p2	NM_178635|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr11_+_98308333_98308404	0.150852	NFIX.p2	AK145996|Grb7|14786|growth factor receptor bound protein 7	BC081547|Grb7|14786|growth factor receptor bound protein 7	AK168438|Grb7|14786|growth factor receptor bound protein 7	AK220277|Grb7|14786|growth factor receptor bound protein 7	BC003295|Grb7|14786|growth factor receptor bound protein 7
mm9_v1_chr1_+_168309297_168309436	0.150635	NFIX.p2	NM_030245|Tada1|27878|transcriptional adaptor 1	BC027337|Tada1|27878|transcriptional adaptor 1	AK151132|Tada1|27878|transcriptional adaptor 1
mm9_v1_chr19_-_4698231_4698314	0.150393	NFIX.p2	AK134945|Gm960|381196|predicted gene 960
mm9_v1_chr7_-_20093663_20093722	0.15007	NFIX.p2	BC043666|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	NM_177692|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK054006|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3	AK153811|Bloc1s3|232946|biogenesis of lysosome-related organelles complex-1, subunit 3
mm9_v1_chrX_+_34414293_34414386	0.150018	NFIX.p2	AK163966|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AF089812|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AF383148|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK133723|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK160538|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK164074|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK160545|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	NM_019668|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK160527|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	BC026053|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK150417|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)	AK153327|Ube2a|22209|ubiquitin-conjugating enzyme E2A, RAD6 homolog (S. cerevisiae)
mm9_v1_chr13_-_12432984_12433003	0.148416	NFIX.p2	AY036877|Actn2|11472|actinin alpha 2	AK047768|Actn2|11472|actinin alpha 2	BC089579|Actn2|11472|actinin alpha 2	NM_033268|Actn2|11472|actinin alpha 2
mm9_v1_chr12_+_62624153_62624158	0.14769	NFIX.p2	AK162923|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr12_-_81233799_81233831	0.147507	NFIX.p2	AK053779|2310015A10Rik|69548|RIKEN cDNA 2310015A10 gene	AK160272|2310015A10Rik|69548|RIKEN cDNA 2310015A10 gene
mm9_v1_chr2_+_172825609_172825642	0.145993	NFIX.p2	BC060072|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	AK079383|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)	NM_175112|Rae1|66679|RAE1 RNA export 1 homolog (S. pombe)
mm9_v1_chr15_+_38591604_38591751	0.145026	NFIX.p2	NM_025494|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK075779|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK129007|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK151237|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK006323|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK168914|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	BC010217|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AB088407|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	U13839|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1
mm9_v1_chr17_+_73186929_73186985	0.144971	NFIX.p2	BC085109|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr15_+_80086643_80086644	0.142819	NFIX.p2	L13791|Atf4|11911|activating transcription factor 4
mm9_v1_chr11_+_77303247_77303355	0.142478	NFIX.p2	AK008669|2210008F06Rik|70057|RIKEN cDNA 2210008F06 gene
mm9_v1_chr15_-_94234778_94234782	0.142301	NFIX.p2	AK145288|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_001164785|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_001164786|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	NM_177431|Adamts20|223838|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20
mm9_v1_chr5_-_34856561_34856665	0.140818	NFIX.p2	AK160165|Tnip2|231130|TNFAIP3 interacting protein 2	BC052083|Tnip2|231130|TNFAIP3 interacting protein 2	AJ304865|Tnip2|231130|TNFAIP3 interacting protein 2	NM_139064|Tnip2|231130|TNFAIP3 interacting protein 2
mm9_v1_chr5_-_42235518_42235530	0.139657	NFIX.p2	AK046296|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK053690|Bod1l|665775|biorientation of chromosomes in cell division 1-like	AK134590|Bod1l|665775|biorientation of chromosomes in cell division 1-like
mm9_v1_chr7_-_7251462_7251471	0.139063	NFIX.p2	DQ186662|Clcn4-2|12727|chloride channel 4-2	AK088317|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr19_+_16207728_16207780	0.138613	NFIX.p2	M55412|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr10_-_92773778_92773948	0.137063	NFIX.p2	Z32815|Elk3|13713|ELK3, member of ETS oncogene family	L19953|Elk3|13713|ELK3, member of ETS oncogene family	BC005686|Elk3|13713|ELK3, member of ETS oncogene family	NM_013508|Elk3|13713|ELK3, member of ETS oncogene family
mm9_v1_chr8_-_125566133_125566242	0.136476	NFIX.p2	AK138711|Ankrd11|77087|ankyrin repeat domain 11
mm9_v1_chr15_-_94373918_94373937	0.136371	NFIX.p2	AK029027|Pus7l|78895|pseudouridylate synthase 7 homolog (S. cerevisiae)-like	AK040257|Pus7l|78895|pseudouridylate synthase 7 homolog (S. cerevisiae)-like	AK019372|Pus7l|78895|pseudouridylate synthase 7 homolog (S. cerevisiae)-like	NM_172437|Pus7l|78895|pseudouridylate synthase 7 homolog (S. cerevisiae)-like
mm9_v1_chr6_+_90319485_90319663	0.136195	NFIX.p2	AK081005|Zxdc|80292|ZXD family zinc finger C	NM_030260|Zxdc|80292|ZXD family zinc finger C	NM_173002|Zxdc|80292|ZXD family zinc finger C	BC003332|Zxdc|80292|ZXD family zinc finger C	AK042190|Zxdc|80292|ZXD family zinc finger C	AK044529|Zxdc|80292|ZXD family zinc finger C	AK030287|Zxdc|80292|ZXD family zinc finger C	AK047538|Zxdc|80292|ZXD family zinc finger C	AK042392|Zxdc|80292|ZXD family zinc finger C	AK080307|Zxdc|80292|ZXD family zinc finger C	AK044429|Zxdc|80292|ZXD family zinc finger C	AK044948|Zxdc|80292|ZXD family zinc finger C	AK169517|Zxdc|80292|ZXD family zinc finger C	AK047079|Zxdc|80292|ZXD family zinc finger C	AK137347|Zxdc|80292|ZXD family zinc finger C	AK141613|Zxdc|80292|ZXD family zinc finger C
mm9_v1_chr7_-_7074155_7074186	0.135365	NFIX.p2	BC055688|Zfp954|232853|zinc finger protein 954	AK033116|Zfp954|232853|zinc finger protein 954	NM_172738|Zfp954|232853|zinc finger protein 954
mm9_v1_chr9_-_78290953_78291043	0.135012	NFIX.p2	BC052196|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	NM_173386|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK078662|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK054330|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK145268|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK154165|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145651|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	BC145653|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene	AK030292|E330016A19Rik|214763|RIKEN cDNA E330016A19 gene
mm9_v1_chr10_+_42550365_42550378	0.13465	NFIX.p2	AK017703|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr18_-_61825143_61825192	0.133898	NFIX.p2	AK087736|E330013P06|328968|hypothetical protein E330013P06
mm9_v1_chr12_+_10397567_10397637	0.132984	NFIX.p2	NM_023697|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	AF303831|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	BC092299|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	BC020094|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	AK014097|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)
mm9_v1_chr2_-_89892475_89892478	0.132849	NFIX.p2	BC111111|Olfr140|57272|olfactory receptor 140	BC141888|Olfr140|57272|olfactory receptor 140	NM_020515|Olfr140|57272|olfactory receptor 140
mm9_v1_chr17_+_74154214_74154436	0.132623	NFIX.p2	AK051717|Ehd3|57440|EH-domain containing 3	AF506002|Ehd3|57440|EH-domain containing 3	BC046596|Ehd3|57440|EH-domain containing 3
mm9_v1_chr1_+_168309525_168309532	0.132166	NFIX.p2	AK013599|Tada1|27878|transcriptional adaptor 1
mm9_v1_chr1_+_40323430_40323476	0.131716	NFIX.p2	AK054137|Il1r1|16177|interleukin 1 receptor, type I	NM_001123382|Il1r1|16177|interleukin 1 receptor, type I
mm9_v1_chr3_+_88425294_88425344	0.131345	NFIX.p2	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr9_+_111341608_111341622	0.130507	NFIX.p2	AK050312|Dclk3|245038|doublecortin-like kinase 3	DQ286388|Dclk3|245038|doublecortin-like kinase 3
mm9_v1_chr2_-_152158370_152158374	0.129963	NFIX.p2	BC034555|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1	NM_019705|Rbck1|24105|RanBP-type and C3HC4-type zinc finger containing 1
mm9_v1_chr10_+_62383370_62383381	0.129243	NFIX.p2	AK030865|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	NM_175194|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm9_v1_chr11_-_66866101_66866132	0.129089	NFIX.p2	NM_025510|2310004I24Rik|66358|RIKEN cDNA 2310004I24 gene
mm9_v1_chr4_-_137881771_137881842	0.128801	NFIX.p2	AK215426|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr18_-_80348125_80348161	0.128057	NFIX.p2	BC044898|Adnp2|240442|ADNP homeobox 2	BC047352|Adnp2|240442|ADNP homeobox 2
mm9_v1_chr6_+_113232300_113232305	0.126718	NFIX.p2	AK042692|Cpne9|211232|copine family member IX	AK137422|Cpne9|211232|copine family member IX	NM_170673|Cpne9|211232|copine family member IX
mm9_v1_chr8_-_11550714_11550782	0.1263	NFIX.p2	AK009937|Cars2|71941|cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	AK010665|Cars2|71941|cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	AK041962|Cars2|71941|cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	AK054486|Cars2|71941|cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	NM_024248|Cars2|71941|cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	AK038968|Cars2|71941|cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
mm9_v1_chr17_-_34161584_34161626	0.124536	NFIX.p2	AK154962|Ring1|19763|ring finger protein 1	BC009070|Ring1|19763|ring finger protein 1	AK155509|Ring1|19763|ring finger protein 1	NM_009066|Ring1|19763|ring finger protein 1
mm9_v1_chr18_+_37890662_37890807	0.124031	NFIX.p2	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr18_+_75178416_75178439	0.123045	NFIX.p2	NM_027727|Dym|69190|dymeclin	AK081242|Dym|69190|dymeclin	BC038276|Dym|69190|dymeclin	AK154794|Dym|69190|dymeclin	BC092283|Dym|69190|dymeclin
mm9_v1_chr4_-_43038575_43038674	0.122214	NFIX.p2	AK220315|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC141058|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	AB038560|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	NM_020035|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC092394|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	BC036977|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O	AK050819|Pigo|56703|phosphatidylinositol glycan anchor biosynthesis, class O
mm9_v1_chr18_+_75160121_75160211	0.121661	NFIX.p2	NM_001002239|Rpl17|319195|ribosomal protein L17	BC091759|Rpl17|319195|ribosomal protein L17	AK088443|Rpl17|319195|ribosomal protein L17	AK002770|Rpl17|319195|ribosomal protein L17	AK011132|Rpl17|319195|ribosomal protein L17	AK011133|Rpl17|319195|ribosomal protein L17	AK137077|Rpl17|319195|ribosomal protein L17	BC090990|Rpl17|319195|ribosomal protein L17
mm9_v1_chr2_+_25356281_25356297	0.119559	NFIX.p2	AK019715|Fbxw5|30839|F-box and WD-40 domain protein 5	NM_013908|Fbxw5|30839|F-box and WD-40 domain protein 5
mm9_v1_chrX_-_147531030_147531085	0.119549	NFIX.p2	BC037444|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC025008|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	AK044504|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	BC049668|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_001164578|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	NM_175146|Tsr2|69499|TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
mm9_v1_chr1_-_63223345_63223399	0.118948	NFIX.p2	NM_001160038|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	NM_001160039|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	NM_001160040|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1	NM_145518|Ndufs1|227197|NADH dehydrogenase (ubiquinone) Fe-S protein 1
mm9_v1_chr14_-_57397125_57397185	0.118614	NFIX.p2	BC026772|Pspc1|66645|paraspeckle protein 1	AK011272|Pspc1|66645|paraspeckle protein 1	AK017689|Pspc1|66645|paraspeckle protein 1	AK150823|Pspc1|66645|paraspeckle protein 1	AK160722|Pspc1|66645|paraspeckle protein 1	NM_025682|Pspc1|66645|paraspeckle protein 1
mm9_v1_chr16_+_95923988_95924060	0.116934	NFIX.p2	NM_011809|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK038348|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr11_-_106474237_106474312	0.116825	NFIX.p2	AK129434|Tex2|21763|testis expressed gene 2	NM_198292|Tex2|21763|testis expressed gene 2	AK168397|Tex2|21763|testis expressed gene 2
mm9_v1_chr2_-_164682380_164682513	0.116452	NFIX.p2	CT010317|Pltp|18830|phospholipid transfer protein	U28960|Pltp|18830|phospholipid transfer protein
mm9_v1_chr2_-_171868868_171868965	0.116274	NFIX.p2	BC094540|Cbln4|228942|cerebellin 4 precursor protein	AK032621|Cbln4|228942|cerebellin 4 precursor protein	NM_175631|Cbln4|228942|cerebellin 4 precursor protein
mm9_v1_chr7_-_106289635_106289638	0.114266	NFIX.p2	AK044129|Uvrag|78610|UV radiation resistance associated gene	AK089900|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr10_-_126778941_126778990	0.114057	NFIX.p2	AK157048|Gli1|14632|GLI-Kruppel family member GLI1
mm9_v1_chr13_-_69138164_69138176	0.114034	NFIX.p2	BC037107|Adcy2|210044|adenylate cyclase 2
mm9_v1_chr13_+_81022644_81022695	0.1134	NFIX.p2	AK088288|Arrdc3|105171|arrestin domain containing 3	AK084951|Arrdc3|105171|arrestin domain containing 3	BC054844|Arrdc3|105171|arrestin domain containing 3	NM_001042591|Arrdc3|105171|arrestin domain containing 3	BC044762|Arrdc3|105171|arrestin domain containing 3	BC098474|Arrdc3|105171|arrestin domain containing 3	AK122499|Arrdc3|105171|arrestin domain containing 3
mm9_v1_chr12_-_88488851_88488917	0.112841	NFIX.p2	AK076813|Pomt2|217734|protein-O-mannosyltransferase 2	AY090481|Pomt2|217734|protein-O-mannosyltransferase 2	NM_153415|Pomt2|217734|protein-O-mannosyltransferase 2	AK085703|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr17_+_73186891_73186925	0.11251	NFIX.p2	AK154461|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr13_+_32893989_32894122	0.112151	NFIX.p2	AB056151|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr3_+_106839079_106839092	0.110409	NFIX.p2	NM_008418|Kcna3|16491|potassium voltage-gated channel, shaker-related subfamily, member 3
mm9_v1_chr11_-_115281230_115281278	0.110045	NFIX.p2	BC016547|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	BC081431|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	AK002376|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d	NM_027862|Atp5h|71679|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm9_v1_chr2_+_181415111_181415136	0.109856	NFIX.p2	AB221557|Tcea2|21400|transcription elongation factor A (SII), 2
mm9_v1_chr10_+_80720191_80720236	0.109742	NFIX.p2	AK018182|Matk|17179|megakaryocyte-associated tyrosine kinase	AK013606|Matk|17179|megakaryocyte-associated tyrosine kinase	S77473|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr9_+_65524331_65524426	0.108963	NFIX.p2	AK169243|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	NM_010952|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK143231|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK146074|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK160444|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168853|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168662|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC055442|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC083114|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AF057298|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC005477|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC110690|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene
mm9_v1_chrX_-_148776674_148776969	0.108735	NFIX.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr12_+_21117704_21117848	0.108146	NFIX.p2	AK172944|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC096022|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr4_+_101169252_101169283	0.10779	NFIX.p2	NM_198412|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	BC064460|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr11_-_118216689_118216724	0.106898	NFIX.p2	NM_011594|Timp2|21858|tissue inhibitor of metalloproteinase 2
mm9_v1_chr5_+_77086705_77086758	0.104818	NFIX.p2	AK143708|Gm10430|100379292|predicted gene 10430
mm9_v1_chr1_-_78485459_78485471	0.104783	NFIX.p2	AF123263|Farsb|23874|phenylalanyl-tRNA synthetase, beta subunit
mm9_v1_chrX_+_132673583_132673679	0.102823	NFIX.p2	AK010400|Bex4|406217|brain expressed gene 4	AY833558|Bex4|406217|brain expressed gene 4	NM_212457|Bex4|406217|brain expressed gene 4	BC090663|Bex4|406217|brain expressed gene 4	BC116226|Bex4|406217|brain expressed gene 4
mm9_v1_chr8_+_11758322_11758364	0.102807	NFIX.p2	NM_001113518|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	NM_017402|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	BC044838|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK052545|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AY220301|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr11_-_95926384_95926408	0.101932	NFIX.p2	AK152529|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)	AK153328|Ube2z|268470|ubiquitin-conjugating enzyme E2Z (putative)
mm9_v1_chr1_-_74552346_74552441	0.0993282	NFIX.p2	BC114208|Usp37|319651|ubiquitin specific peptidase 37	AK035640|Usp37|319651|ubiquitin specific peptidase 37
mm9_v1_chr12_-_29435326_29435339	0.0993014	NFIX.p2	AK084171|Ttc15|217449|tetratricopeptide repeat domain 15
mm9_v1_chr3_-_142058569_142058593	0.0987598	NFIX.p2	AK009464|Pdlim5|56376|PDZ and LIM domain 5	AB016586|Pdlim5|56376|PDZ and LIM domain 5	AB016588|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr2_-_155555105_155555210	0.0982886	NFIX.p2	AK075650|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	BC008268|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK149892|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK040560|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK079296|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK166998|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK080636|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK029164|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	AK155024|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2	NM_145537|Edem2|108687|ER degradation enhancer, mannosidase alpha-like 2
mm9_v1_chr7_-_106289639_106289648	0.0981784	NFIX.p2	AK165015|Uvrag|78610|UV radiation resistance associated gene	AK078085|Uvrag|78610|UV radiation resistance associated gene
mm9_v1_chr17_+_64213326_64213348	0.0978364	NFIX.p2	AK165973|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr7_-_31912022_31912061	0.097747	NFIX.p2	BC039140|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr9_+_111341538_111341596	0.0976515	NFIX.p2	NM_172928|Dclk3|245038|doublecortin-like kinase 3	AK135010|Dclk3|245038|doublecortin-like kinase 3
mm9_v1_chr3_+_36962577_36962599	0.0972217	NFIX.p2	NM_009350|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	X84693|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	BC107346|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)
mm9_v1_chr17_-_32171436_32171452	0.0967767	NFIX.p2	AK016553|Hsf2bp|74377|heat shock transcription factor 2 binding protein	NM_028902|Hsf2bp|74377|heat shock transcription factor 2 binding protein
mm9_v1_chr5_-_24781987_24782111	0.0964602	NFIX.p2	AK077567|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr16_+_45159173_45159221	0.0957437	NFIX.p2	AB079386|Atg3|67841|autophagy-related 3 (yeast)
mm9_v1_chr2_-_151799566_151799709	0.0945278	NFIX.p2	AJ277454|Fam110a|73847|family with sequence similarity 110, member A	BC018162|Fam110a|73847|family with sequence similarity 110, member A	NM_028666|Fam110a|73847|family with sequence similarity 110, member A
mm9_v1_chr2_+_78709195_78709267	0.0943289	NFIX.p2	BC011477|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)	NM_009454|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr11_+_54911540_54911679	0.0937297	NFIX.p2	AK149642|Gm2a|14667|GM2 ganglioside activator protein	AK152256|Gm2a|14667|GM2 ganglioside activator protein	U09816|Gm2a|14667|GM2 ganglioside activator protein	BC004651|Gm2a|14667|GM2 ganglioside activator protein	NM_010299|Gm2a|14667|GM2 ganglioside activator protein	L19526|Gm2a|14667|GM2 ganglioside activator protein	CT010289|Gm2a|14667|GM2 ganglioside activator protein	AK179394|Gm2a|14667|GM2 ganglioside activator protein	AK181597|Gm2a|14667|GM2 ganglioside activator protein
mm9_v1_chr7_+_29478162_29478199	0.0932483	NFIX.p2	AK158463|Fbxo27|233040|F-box protein 27	NM_001163702|Fbxo27|233040|F-box protein 27	AK140275|Fbxo27|233040|F-box protein 27	BC075656|Fbxo27|233040|F-box protein 27
mm9_v1_chr11_-_43496158_43496178	0.0930808	NFIX.p2	
mm9_v1_chr9_-_106789330_106789418	0.0923126	NFIX.p2	BC078452|Rbm15b|109095|RNA binding motif protein 15B	NM_175402|Rbm15b|109095|RNA binding motif protein 15B	BC052180|Rbm15b|109095|RNA binding motif protein 15B
mm9_v1_chr18_-_39649499_39649545	0.0913899	NFIX.p2	AK156323|Nr3c1|14815|nuclear receptor subfamily 3, group C, member 1
mm9_v1_chr16_+_29209780_29209780	0.0909888	NFIX.p2	AK039471|Hrasls|27281|HRAS-like suppressor	NM_013751|Hrasls|27281|HRAS-like suppressor
mm9_v1_chr16_-_30550494_30550593	0.0900202	NFIX.p2	BC080307|Tmem44|224090|transmembrane protein 44
mm9_v1_chr15_+_81846798_81846883	0.0896059	NFIX.p2	NM_010247|Xrcc6|14375|X-ray repair complementing defective repair in Chinese hamster cells 6	AK143570|Xrcc6|14375|X-ray repair complementing defective repair in Chinese hamster cells 6	AK146396|Xrcc6|14375|X-ray repair complementing defective repair in Chinese hamster cells 6	BC031422|Xrcc6|14375|X-ray repair complementing defective repair in Chinese hamster cells 6	AB010282|Xrcc6|14375|X-ray repair complementing defective repair in Chinese hamster cells 6	AK146392|Xrcc6|14375|X-ray repair complementing defective repair in Chinese hamster cells 6	AK146394|Xrcc6|14375|X-ray repair complementing defective repair in Chinese hamster cells 6
mm9_v1_chr15_-_75920355_75920542	0.088689	NFIX.p2	BC011468|Nrbp2|223649|nuclear receptor binding protein 2	BC012437|Nrbp2|223649|nuclear receptor binding protein 2	NM_144847|Nrbp2|223649|nuclear receptor binding protein 2
mm9_v1_chr14_+_31815002_31815071	0.0886271	NFIX.p2	AK160461|Glt8d1|76485|glycosyltransferase 8 domain containing 1	BC069873|Glt8d1|76485|glycosyltransferase 8 domain containing 1
mm9_v1_chr5_+_114185982_114186036	0.0883373	NFIX.p2	AK044446|Ficd|231630|FIC domain containing	AK054325|Ficd|231630|FIC domain containing
mm9_v1_chr11_-_58615400_58615517	0.0867873	NFIX.p2	FJ468008|Fam183b|75429|family with sequence similarity 183, member B	BC094630|Fam183b|75429|family with sequence similarity 183, member B	BC061254|Fam183b|75429|family with sequence similarity 183, member B	BC048748|Fam183b|75429|family with sequence similarity 183, member B	AK157972|Fam183b|75429|family with sequence similarity 183, member B	AK013920|Fam183b|75429|family with sequence similarity 183, member B	NM_001162878|Fam183b|75429|family with sequence similarity 183, member B	NM_029283|Fam183b|75429|family with sequence similarity 183, member B	BC126964|Fam183b|75429|family with sequence similarity 183, member B	BC117741|Fam183b|75429|family with sequence similarity 183, member B
mm9_v1_chr12_+_56921498_56921597	0.0864687	NFIX.p2	AK015025|Ralgapa1|56784|Ral GTPase activating protein, alpha subunit 1
mm9_v1_chr2_+_37307751_37307773	0.0863997	NFIX.p2	AK044346|Rabgap1|227800|RAB GTPase activating protein 1	NM_001033960|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr1_+_155756310_155756313	0.085663	NFIX.p2	AK146463|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK158643|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159888|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK152497|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr7_+_16633755_16633793	0.0836369	NFIX.p2	AK008102|2010004M13Rik|76511|RIKEN cDNA 2010004M13 gene
mm9_v1_chr17_-_57150708_57150759	0.0834302	NFIX.p2	BC003336|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	BC023081|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	NM_133801|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK168236|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK168243|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK013002|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK078048|Gtf2f1|98053|general transcription factor IIF, polypeptide 1
mm9_v1_chr12_+_21117670_21117690	0.0831996	NFIX.p2	AK147656|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr19_+_5366979_5367035	0.0823056	NFIX.p2	AK031807|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	AK083659|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	AK153194|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	AK168598|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	AK158977|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	AK008070|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	AK168102|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing	AK168253|Eif1ad|69860|eukaryotic translation initiation factor 1A domain containing
mm9_v1_chr3_-_104621424_104621520	0.0820067	NFIX.p2	AK159295|Mov10|17454|Moloney leukemia virus 10	NM_001163440|Mov10|17454|Moloney leukemia virus 10
mm9_v1_chr1_-_184447549_184447745	0.081848	NFIX.p2	AF015038|Capn2|12334|calpain 2	AK150695|Capn2|12334|calpain 2	AK152094|Capn2|12334|calpain 2	AK152790|Capn2|12334|calpain 2	AK152994|Capn2|12334|calpain 2	AK052141|Capn2|12334|calpain 2	BC054726|Capn2|12334|calpain 2	NM_009794|Capn2|12334|calpain 2	AK154855|Capn2|12334|calpain 2	D38117|Capn2|12334|calpain 2	AK053832|Capn2|12334|calpain 2
mm9_v1_chr15_-_36723335_36723370	0.0809893	NFIX.p2	AK146800|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	AK150381|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	D87660|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr9_-_20297116_20297218	0.0808326	NFIX.p2	AK036912|Zfp426|235028|zinc finger protein 426	AK048284|Zfp426|235028|zinc finger protein 426	BC023931|Zfp426|235028|zinc finger protein 426	BC024805|Zfp426|235028|zinc finger protein 426	AK220563|Zfp426|235028|zinc finger protein 426	AK085144|Zfp426|235028|zinc finger protein 426	NM_001110309|Zfp426|235028|zinc finger protein 426	NM_146221|Zfp426|235028|zinc finger protein 426
mm9_v1_chr7_+_31514580_31514656	0.0796027	NFIX.p2	AK049951|C630016N16Rik|791088|RIKEN cDNA C630016N16 gene
mm9_v1_chr10_+_126602394_126602451	0.0794242	NFIX.p2	BC022180|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr7_-_112959591_112959616	0.0791885	NFIX.p2	NM_025301|Mrpl17|27397|mitochondrial ribosomal protein L17
mm9_v1_chr11_+_62633937_62634006	0.079139	NFIX.p2	AK053139|Trim16|94092|tripartite motif-containing 16	BC052821|Trim16|94092|tripartite motif-containing 16	AF449496|Trim16|94092|tripartite motif-containing 16
mm9_v1_chr12_+_96933566_96933571	0.0791258	NFIX.p2	AK140831|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr11_-_98261715_98261736	0.0790427	NFIX.p2	AK170817|Pgap3|320655|post-GPI attachment to proteins 3	AK052486|Pgap3|320655|post-GPI attachment to proteins 3	AK078974|Pgap3|320655|post-GPI attachment to proteins 3	BC035945|Pgap3|320655|post-GPI attachment to proteins 3
mm9_v1_chr13_-_67433435_67433495	0.0778404	NFIX.p2	BC141018|Zfp595|218314|zinc finger protein 595	AK134150|Zfp595|218314|zinc finger protein 595	AK154058|Zfp595|218314|zinc finger protein 595	AK136304|Zfp595|218314|zinc finger protein 595	AK038563|Zfp595|218314|zinc finger protein 595	NM_177622|Zfp595|218314|zinc finger protein 595
mm9_v1_chr19_+_16207300_16207320	0.0770048	NFIX.p2	AK147393|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide	NM_008139|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chr2_+_127161893_127161939	0.0762098	NFIX.p2	AK088059|Dusp2|13537|dual specificity phosphatase 2	AK134067|Dusp2|13537|dual specificity phosphatase 2	NM_010090|Dusp2|13537|dual specificity phosphatase 2	BC048696|Dusp2|13537|dual specificity phosphatase 2	L11330|Dusp2|13537|dual specificity phosphatase 2
mm9_v1_chr3_+_96405063_96405082	0.0761262	NFIX.p2	AK051276|Lix1l|280411|Lix1-like
mm9_v1_chr8_+_119467267_119467410	0.0750439	NFIX.p2	AX775769|Atmin|234776|ATM interactor	NM_177700|Atmin|234776|ATM interactor	BC060631|Atmin|234776|ATM interactor	BC027752|Atmin|234776|ATM interactor	AK122281|Atmin|234776|ATM interactor
mm9_v1_chr3_+_32635988_32636035	0.0750209	NFIX.p2	BC025155|Ndufb5|66046|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5
mm9_v1_chr4_+_154230308_154230456	0.0747783	NFIX.p2	NM_172878|Ttc34|242800|tetratricopeptide repeat domain 34	AK030055|Ttc34|242800|tetratricopeptide repeat domain 34	BC068299|Ttc34|242800|tetratricopeptide repeat domain 34
mm9_v1_chr4_-_106136929_106136933	0.0747458	NFIX.p2	NM_153565|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9	BC038085|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9
mm9_v1_chr14_-_21365595_21365800	0.0744592	NFIX.p2	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr6_-_115201790_115201797	0.0736751	NFIX.p2	AF282730|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr2_+_75670242_75670248	0.0734393	NFIX.p2	AK053686|Agps|228061|alkylglycerone phosphate synthase	BC063086|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr8_+_107872157_107872157	0.0722438	NFIX.p2	NM_001081332|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr5_+_92984113_92984113	0.0721045	NFIX.p2	NM_001170572|Fam47e|384198|family with sequence similarity 47, member E
mm9_v1_chr2_-_180436533_180436806	0.0720266	NFIX.p2	BC029110|Dido1|23856|death inducer-obliterator 1	AJ238332|Dido1|23856|death inducer-obliterator 1	AY425951|Dido1|23856|death inducer-obliterator 1	AY425952|Dido1|23856|death inducer-obliterator 1	AK044919|Dido1|23856|death inducer-obliterator 1	AK083334|Dido1|23856|death inducer-obliterator 1	AK042474|Dido1|23856|death inducer-obliterator 1	NM_011805|Dido1|23856|death inducer-obliterator 1	NM_175551|Dido1|23856|death inducer-obliterator 1	AK014422|Dido1|23856|death inducer-obliterator 1
mm9_v1_chr10_-_6606128_6606213	0.0708338	NFIX.p2	AK033676|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	AK034403|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	NM_001159942|Plekhg1|213783|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm9_v1_chr12_+_117724251_117724308	0.0704819	NFIX.p2	AK220255|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	U57345|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	BC133678|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2
mm9_v1_chr4_-_106136553_106136700	0.0700992	NFIX.p2	AY273821|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9
mm9_v1_chr9_-_122930668_122930689	0.0697516	NFIX.p2	AK016980|Gm9856|100126228|predicted gene 9856
mm9_v1_chr17_-_50329593_50329893	0.0697487	NFIX.p2	AK087803|Rftn1|76438|raftlin lipid raft linker 1	AK152130|Rftn1|76438|raftlin lipid raft linker 1	AK153288|Rftn1|76438|raftlin lipid raft linker 1	AK172884|Rftn1|76438|raftlin lipid raft linker 1	AK155870|Rftn1|76438|raftlin lipid raft linker 1	AK170913|Rftn1|76438|raftlin lipid raft linker 1	BC052074|Rftn1|76438|raftlin lipid raft linker 1	NM_181397|Rftn1|76438|raftlin lipid raft linker 1
mm9_v1_chr19_+_32694494_32694583	0.0691087	NFIX.p2	AK128962|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	BC090997|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	NM_011864|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF052453|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2	AF085144|Papss2|23972|3'-phosphoadenosine 5'-phosphosulfate synthase 2
mm9_v1_chr10_-_42941186_42941189	0.0681721	NFIX.p2	AK017348|5430427G11Rik|71414|RIKEN cDNA 5430427G11 gene
mm9_v1_chr8_+_96910392_96910428	0.0680596	NFIX.p2	AK081688|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AK159500|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AK165832|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AB034991|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	NM_022331|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	AK172874|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	BC013523|Herpud1|64209|homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
mm9_v1_chr10_-_80204784_80204803	0.0679332	NFIX.p2	AK141789|Ap3d1|11776|adaptor-related protein complex 3, delta 1 subunit
mm9_v1_chrX_-_148777014_148777028	0.0676631	NFIX.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr12_+_112812710_112812750	0.0675502	NFIX.p2	AK083683|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	NM_021516|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	NM_022801|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	AK166157|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	AK132247|Mark3|17169|MAP/microtubule affinity-regulating kinase 3	BC066071|Mark3|17169|MAP/microtubule affinity-regulating kinase 3
mm9_v1_chr16_+_20621467_20621606	0.0675045	NFIX.p2	
mm9_v1_chr14_+_121434765_121434823	0.0660751	NFIX.p2	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr13_-_115178227_115178301	0.0652054	NFIX.p2	AF124785|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020552|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	BC004618|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK011124|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	AK020108|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4	NM_010887|Ndufs4|17993|NADH dehydrogenase (ubiquinone) Fe-S protein 4
mm9_v1_chr17_-_7152972_7153124	0.0651252	NFIX.p2	BC110284|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chr7_+_144629356_144629410	0.0642932	NFIX.p2	
mm9_v1_chr9_-_123626642_123626742	0.0642145	NFIX.p2	AK046515|Lztfl1|93730|leucine zipper transcription factor-like 1	BC037045|Lztfl1|93730|leucine zipper transcription factor-like 1	AJ297352|Lztfl1|93730|leucine zipper transcription factor-like 1	BC098224|Lztfl1|93730|leucine zipper transcription factor-like 1	BC026840|Lztfl1|93730|leucine zipper transcription factor-like 1	NM_033322|Lztfl1|93730|leucine zipper transcription factor-like 1	AK054003|Lztfl1|93730|leucine zipper transcription factor-like 1	AK157770|Lztfl1|93730|leucine zipper transcription factor-like 1	AK145263|Lztfl1|93730|leucine zipper transcription factor-like 1	AK030068|Lztfl1|93730|leucine zipper transcription factor-like 1	AK029671|Lztfl1|93730|leucine zipper transcription factor-like 1	AK041091|Lztfl1|93730|leucine zipper transcription factor-like 1	AK147312|Lztfl1|93730|leucine zipper transcription factor-like 1
mm9_v1_chr3_-_88306724_88306855	0.064174	NFIX.p2	AK180919|Lmna|16905|lamin A
mm9_v1_chr9_-_15162109_15162147	0.0631396	NFIX.p2	AK051561|5830418K08Rik|319675|RIKEN cDNA 5830418K08 gene
mm9_v1_chr17_+_35479186_35479277	0.0626198	NFIX.p2	BC138688|H2-Q2|15013|histocompatibility 2, Q region locus 2	BC138689|H2-Q2|15013|histocompatibility 2, Q region locus 2	AY989880|H2-Q2|15013|histocompatibility 2, Q region locus 2	NM_010392|H2-Q2|15013|histocompatibility 2, Q region locus 2
mm9_v1_chr13_+_38436987_38437005	0.062414	NFIX.p2	AK041210|Bmp6|12161|bone morphogenetic protein 6
mm9_v1_chr8_-_113862056_113862142	0.0623192	NFIX.p2	AK018636|Mlkl|74568|mixed lineage kinase domain-like	BC023755|Mlkl|74568|mixed lineage kinase domain-like
mm9_v1_chr19_+_45122065_45122176	0.0619708	NFIX.p2	NM_001178012|Sfxn3|94280|sideroflexin 3	NM_001178013|Sfxn3|94280|sideroflexin 3	NM_053197|Sfxn3|94280|sideroflexin 3	BC012208|Sfxn3|94280|sideroflexin 3
mm9_v1_chr4_+_135866879_135866952	0.0613303	NFIX.p2	AK152039|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK147043|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	BC038051|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	NM_028871|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK144682|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK141145|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK145849|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK133840|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK011307|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	AK144992|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R	BC004679|Hnrnpr|74326|heterogeneous nuclear ribonucleoprotein R
mm9_v1_chr9_+_123276047_123276053	0.0613244	NFIX.p2	AK032695|Lars2|102436|leucyl-tRNA synthetase, mitochondrial
mm9_v1_chr16_-_31948214_31948358	0.0613167	NFIX.p2	
mm9_v1_chr10_+_61178010_61178080	0.0608761	NFIX.p2	NM_001039194|Aifm2|71361|apoptosis-inducing factor, mitochondrion-associated 2	NM_178058|Aifm2|71361|apoptosis-inducing factor, mitochondrion-associated 2	AK017403|Aifm2|71361|apoptosis-inducing factor, mitochondrion-associated 2	AK147741|Aifm2|71361|apoptosis-inducing factor, mitochondrion-associated 2	AK085656|Aifm2|71361|apoptosis-inducing factor, mitochondrion-associated 2	AK155240|Aifm2|71361|apoptosis-inducing factor, mitochondrion-associated 2
mm9_v1_chr11_+_72774670_72774671	0.0604809	NFIX.p2	AK155904|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_001163336|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_001163337|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	NM_016745|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	AK089487|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous
mm9_v1_chr5_-_31999977_32000001	0.0593547	NFIX.p2	BC023339|Rbks|71336|ribokinase	NM_153196|Rbks|71336|ribokinase	AK017229|Rbks|71336|ribokinase	AK138939|Rbks|71336|ribokinase
mm9_v1_chr3_-_105762117_105762217	0.0578914	NFIX.p2	AK169634|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	BC089574|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK162311|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK149176|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK167626|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK168590|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK151574|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK081249|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK002960|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	BC049640|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK011312|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK168028|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK168041|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK019459|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK037892|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK152253|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK152829|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK167480|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK169137|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK150730|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK151250|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK158569|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	AK157544|Atp5f1|11950|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm9_v1_chr1_-_79855229_79855247	0.0575284	NFIX.p2	NM_009255|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr4_+_87740516_87740554	0.0571556	NFIX.p2	NM_001081184|BC057079|230393|cDNA sequence BC057079	AK164030|BC057079|230393|cDNA sequence BC057079
mm9_v1_chr13_-_95128772_95128784	0.0563856	NFIX.p2	AK141947|Gm9776|328309|predicted gene 9776
mm9_v1_chr1_+_74283113_74283139	0.0562774	NFIX.p2	AK170061|Arpc2|76709|actin related protein 2/3 complex, subunit 2	NM_029711|Arpc2|76709|actin related protein 2/3 complex, subunit 2
mm9_v1_chr12_-_106103171_106103182	0.0561651	NFIX.p2	BC096470|Clmn|94040|calmin
mm9_v1_chr7_+_133572567_133572631	0.0560282	NFIX.p2	AK089938|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK144836|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK157832|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2
mm9_v1_chr14_-_25065141_25065143	0.0559992	NFIX.p2	AK147699|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_001163513|Dlg5|71228|discs, large homolog 5 (Drosophila)	NM_027726|Dlg5|71228|discs, large homolog 5 (Drosophila)
mm9_v1_chr4_-_49533914_49533978	0.0555194	NFIX.p2	AK075787|Mrpl50|28028|mitochondrial ribosomal protein L50	AK002646|Mrpl50|28028|mitochondrial ribosomal protein L50	AK049421|Mrpl50|28028|mitochondrial ribosomal protein L50	AK007405|Mrpl50|28028|mitochondrial ribosomal protein L50	AK031229|Mrpl50|28028|mitochondrial ribosomal protein L50	NM_178603|Mrpl50|28028|mitochondrial ribosomal protein L50	AK002686|Mrpl50|28028|mitochondrial ribosomal protein L50
mm9_v1_chr18_-_67608747_67608862	0.0550601	NFIX.p2	AK009650|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK149970|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK155403|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	BC021380|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	BC043056|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	NM_027130|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK151207|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK152115|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK152727|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	BC036999|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK164537|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)	AK168668|Afg3l2|69597|AFG3(ATPase family gene 3)-like 2 (yeast)
mm9_v1_chr8_-_36889525_36889612	0.0549621	NFIX.p2	AK009330|Cldn23|71908|claudin 23	AK037108|Cldn23|71908|claudin 23	BC019534|Cldn23|71908|claudin 23	BC085262|Cldn23|71908|claudin 23	AK145246|Cldn23|71908|claudin 23	NM_027998|Cldn23|71908|claudin 23
mm9_v1_chr2_-_35835071_35835146	0.0549275	NFIX.p2	AM690755|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_028921|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	NM_029774|Ttll11|74410|tubulin tyrosine ligase-like family, member 11	AK037481|Ttll11|74410|tubulin tyrosine ligase-like family, member 11
mm9_v1_chr2_+_163820920_163821078	0.0547953	NFIX.p2	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr3_-_144382959_144383365	0.0534237	NFIX.p2	AK029647|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK158415|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK011371|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK004590|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	BC024362|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK172959|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK146246|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF263364|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF272946|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	DQ205686|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	NM_019464|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr11_+_57917712_57917754	0.0531859	NFIX.p2	AK007581|Cnot8|69125|CCR4-NOT transcription complex, subunit 8
mm9_v1_chr19_+_56948738_56948999	0.0531735	NFIX.p2	AK145058|Vwa2|240675|von Willebrand factor A domain containing 2	AK166339|Vwa2|240675|von Willebrand factor A domain containing 2	AK160971|Vwa2|240675|von Willebrand factor A domain containing 2	AJ536329|Vwa2|240675|von Willebrand factor A domain containing 2	NM_172840|Vwa2|240675|von Willebrand factor A domain containing 2	BC116636|Vwa2|240675|von Willebrand factor A domain containing 2	BC115868|Vwa2|240675|von Willebrand factor A domain containing 2	AK029297|Vwa2|240675|von Willebrand factor A domain containing 2	AK133486|Vwa2|240675|von Willebrand factor A domain containing 2
mm9_v1_chr19_-_45857542_45857780	0.0530026	NFIX.p2	AF132214|Mgea5|76055|meningioma expressed antigen 5 (hyaluronidase)	BC020093|Mgea5|76055|meningioma expressed antigen 5 (hyaluronidase)	BC054821|Mgea5|76055|meningioma expressed antigen 5 (hyaluronidase)	NM_023799|Mgea5|76055|meningioma expressed antigen 5 (hyaluronidase)
mm9_v1_chrX_+_39502588_39502859	0.0523024	NFIX.p2	NM_001077712|Stag2|20843|stromal antigen 2	AK050415|Stag2|20843|stromal antigen 2	AK077318|Stag2|20843|stromal antigen 2	AK020968|Stag2|20843|stromal antigen 2	AK020316|Stag2|20843|stromal antigen 2
mm9_v1_chr6_-_120481314_120481342	0.0511722	NFIX.p2	BC014705|Cecr5|214932|cat eye syndrome chromosome region, candidate 5 homolog (human)	NM_144815|Cecr5|214932|cat eye syndrome chromosome region, candidate 5 homolog (human)	AK040291|Cecr5|214932|cat eye syndrome chromosome region, candidate 5 homolog (human)	AK044228|Cecr5|214932|cat eye syndrome chromosome region, candidate 5 homolog (human)	AK140387|Cecr5|214932|cat eye syndrome chromosome region, candidate 5 homolog (human)
mm9_v1_chr17_+_24551840_24552094	0.0510687	NFIX.p2	X70067|Rnps1|19826|ribonucleic acid binding protein S1	AK206201|Rnps1|19826|ribonucleic acid binding protein S1
mm9_v1_chr3_-_27609279_27609407	0.0509818	NFIX.p2	AB098596|Fndc3b|72007|fibronectin type III domain containing 3B	AK147346|Fndc3b|72007|fibronectin type III domain containing 3B	AK220297|Fndc3b|72007|fibronectin type III domain containing 3B	NM_173182|Fndc3b|72007|fibronectin type III domain containing 3B	BC067389|Fndc3b|72007|fibronectin type III domain containing 3B
mm9_v1_chr13_+_3537514_3537611	0.0507143	NFIX.p2	L36314|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr15_+_91503654_91503682	0.0498897	NFIX.p2	AK052591|Lrrk2|66725|leucine-rich repeat kinase 2	NM_025730|Lrrk2|66725|leucine-rich repeat kinase 2
mm9_v1_chr2_+_37307786_37307807	0.049309	NFIX.p2	AK029667|Rabgap1|227800|RAB GTPase activating protein 1
mm9_v1_chr18_-_25327116_25327212	0.0489311	NFIX.p2	BC080777|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene	AK017728|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene	AK160220|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene	AK141632|5730494M16Rik|66648|RIKEN cDNA 5730494M16 gene
mm9_v1_chr12_-_70993825_70993856	0.0483188	NFIX.p2	AK084891|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5
mm9_v1_chr11_+_17059301_17059317	0.0480601	NFIX.p2	AK160938|Ppp3r1|19058|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm9_v1_chr10_+_31033188_31033271	0.0480496	NFIX.p2	BC104360|Hddc2|69692|HD domain containing 2	BC104361|Hddc2|69692|HD domain containing 2	NM_027168|Hddc2|69692|HD domain containing 2	AK009957|Hddc2|69692|HD domain containing 2
mm9_v1_chr16_+_91373153_91373272	0.0479089	NFIX.p2	AF013486|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09813|Ifnar2|15976|interferon (alpha and beta) receptor 2	AF013274|Ifnar2|15976|interferon (alpha and beta) receptor 2
mm9_v1_chr1_+_129101551_129101562	0.0476884	NFIX.p2	NM_145128|Mgat5|107895|mannoside acetylglucosaminyltransferase 5
mm9_v1_chr5_+_141717417_141717443	0.0473392	NFIX.p2	AK147578|Sdk1|330222|sidekick homolog 1 (chicken)
mm9_v1_chr15_-_99602509_99602655	0.0473063	NFIX.p2	AK219835|Lass5|71949|LAG1 homolog, ceramide synthase 5
mm9_v1_chr13_+_47201647_47201786	0.04727	NFIX.p2	AK006396|1700026N04Rik|72271|RIKEN cDNA 1700026N04 gene
mm9_v1_chr7_+_106530044_106530083	0.04713	NFIX.p2	BC082585|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5	NM_201352|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr5_-_110715027_110715078	0.0468195	NFIX.p2	BC057975|Pxmp2|19301|peroxisomal membrane protein 2	AF309644|Pxmp2|19301|peroxisomal membrane protein 2	AK003118|Pxmp2|19301|peroxisomal membrane protein 2
mm9_v1_chr12_-_29435271_29435318	0.0463358	NFIX.p2	AK079067|Ttc15|217449|tetratricopeptide repeat domain 15	AK171540|Ttc15|217449|tetratricopeptide repeat domain 15	AK052245|Ttc15|217449|tetratricopeptide repeat domain 15	NM_001161411|Ttc15|217449|tetratricopeptide repeat domain 15	NM_178811|Ttc15|217449|tetratricopeptide repeat domain 15
mm9_v1_chr1_+_133424461_133424479	0.0459989	NFIX.p2	BC090647|Fam72a|108900|family with sequence similarity 72, member A
mm9_v1_chr2_-_5635228_5635384	0.0459866	NFIX.p2	AK052401|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	BC141413|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	BC141414|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr11_+_62462155_62462185	0.0455556	NFIX.p2	NM_175002|Mmgt2|216829|membrane magnesium transporter 2	BC096583|Mmgt2|216829|membrane magnesium transporter 2
mm9_v1_chr7_+_91300837_91300867	0.0451953	NFIX.p2	
mm9_v1_chr4_+_126846429_126846514	0.0449568	NFIX.p2	BC057615|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3	NM_198618|Dlgap3|242667|discs, large (Drosophila) homolog-associated protein 3
mm9_v1_chr11_+_17059319_17059327	0.0446463	NFIX.p2	AK145541|Ppp3r1|19058|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	AK163241|Ppp3r1|19058|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm9_v1_chr1_-_137482259_137482285	0.0445088	NFIX.p2	AF307453|Nav1|215690|neuron navigator 1
mm9_v1_chr10_+_70810540_70810588	0.0442197	NFIX.p2	BC052463|Ipmk|69718|inositol polyphosphate multikinase	NM_027184|Ipmk|69718|inositol polyphosphate multikinase	AK036978|Ipmk|69718|inositol polyphosphate multikinase	AK010523|Ipmk|69718|inositol polyphosphate multikinase	AK172246|Ipmk|69718|inositol polyphosphate multikinase	AK171355|Ipmk|69718|inositol polyphosphate multikinase
mm9_v1_chr13_-_43295201_43295224	0.0441193	NFIX.p2	AK036079|Gfod1|328232|glucose-fructose oxidoreductase domain containing 1
mm9_v1_chr18_-_36838775_36838784	0.0425859	NFIX.p2	BC024136|Apbb3|225372|amyloid beta (A4) precursor protein-binding, family B, member 3
mm9_v1_chr11_+_59320146_59320183	0.0420995	NFIX.p2	AK051100|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene
mm9_v1_chr18_+_44988318_44988415	0.0418104	NFIX.p2	BC138263|Ythdc2|240255|YTH domain containing 2	BC171951|Ythdc2|240255|YTH domain containing 2	NM_001163013|Ythdc2|240255|YTH domain containing 2
mm9_v1_chr13_-_41454331_41454333	0.0417353	NFIX.p2	AK046357|Nedd9|18003|neural precursor cell expressed, developmentally down-regulated gene 9
mm9_v1_chr8_+_74134884_74135109	0.0417295	NFIX.p2	BC032165|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK036165|Glt25d1|234407|glycosyltransferase 25 domain containing 1	NM_146211|Glt25d1|234407|glycosyltransferase 25 domain containing 1	BC056951|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK035788|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK076103|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK029433|Glt25d1|234407|glycosyltransferase 25 domain containing 1	AK154775|Glt25d1|234407|glycosyltransferase 25 domain containing 1
mm9_v1_chr7_+_25669603_25669732	0.0410004	NFIX.p2	AK013524|Rps19|20085|ribosomal protein S19	AK031403|Rps19|20085|ribosomal protein S19	BC086938|Rps19|20085|ribosomal protein S19	AK012052|Rps19|20085|ribosomal protein S19	AK028244|Rps19|20085|ribosomal protein S19	BC034506|Rps19|20085|ribosomal protein S19	AK018725|Rps19|20085|ribosomal protein S19	NM_023133|Rps19|20085|ribosomal protein S19
mm9_v1_chr3_-_5576206_5576238	0.0409477	NFIX.p2	AF031128|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163302|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163303|Pxmp3|19302|peroxisomal membrane protein 3
mm9_v1_chr3_-_97692613_97692634	0.0404142	NFIX.p2	BC028274|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC141185|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC145504|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001039376|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr19_-_28754566_28754608	0.039868	NFIX.p2	AK054020|Glis3|226075|GLIS family zinc finger 3	DQ871027|Glis3|226075|GLIS family zinc finger 3	NM_175459|Glis3|226075|GLIS family zinc finger 3
mm9_v1_chr18_-_77952721_77952748	0.039826	NFIX.p2	AK046785|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK033209|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	AK163840|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene	NM_178670|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr2_-_163245205_163245247	0.0398258	NFIX.p2	BC005579|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	NM_025699|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK009708|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK014323|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK088622|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK153499|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene	AK006969|3230401D17Rik|66680|RIKEN cDNA 3230401D17 gene
mm9_v1_chr8_+_97296093_97296104	0.0390943	NFIX.p2	AB030188|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	AK078285|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	AK138214|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	AK138472|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	AK138574|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	AK154646|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr7_+_91677480_91677490	0.0387694	NFIX.p2	AK137174|Gm2115|100039239|predicted gene 2115
mm9_v1_chr14_+_35633312_35633351	0.0384782	NFIX.p2	NM_008166|Grid1|14803|glutamate receptor, ionotropic, delta 1	AK138279|Grid1|14803|glutamate receptor, ionotropic, delta 1	D10171|Grid1|14803|glutamate receptor, ionotropic, delta 1
mm9_v1_chr2_-_155517936_155518062	0.038441	NFIX.p2	AK216771|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AF509881|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	BC033274|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK170085|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr13_-_30637108_30637234	0.0378795	NFIX.p2	AK012180|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK003966|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK153139|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	NM_025710|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK014470|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	BC019934|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	BC047125|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	AK152391|Uqcrfs1|66694|ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1
mm9_v1_chr12_+_114214947_114214965	0.0374628	NFIX.p2	AK146991|Btbd6|399566|BTB (POZ) domain containing 6
mm9_v1_chr11_-_97011324_97011437	0.0374419	NFIX.p2	AK014173|Tbkbp1|73174|TBK1 binding protein 1
mm9_v1_chrX_-_147779368_147779423	0.0371401	NFIX.p2	AK038885|A230072E10Rik|331547|RIKEN cDNA A230072E10 gene	BC025887|A230072E10Rik|331547|RIKEN cDNA A230072E10 gene
mm9_v1_chr5_-_139821054_139821222	0.0371385	NFIX.p2	AK148526|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK007984|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC031792|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_197980|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK002486|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK013260|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK003697|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)	AK013289|Cox19|68033|COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr5_+_118426802_118426818	0.0369602	NFIX.p2	AK048131|Fbxo21|231670|F-box protein 21	AK048542|Fbxo21|231670|F-box protein 21
mm9_v1_chr4_-_116323979_116324063	0.0368713	NFIX.p2	AK128906|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK186333|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK192030|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK210646|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK219186|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	AK009462|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)	BC003850|Akr1a4|58810|aldo-keto reductase family 1, member A4 (aldehyde reductase)
mm9_v1_chr10_+_42398721_42398783	0.0360601	NFIX.p2	AK044897|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AF533890|Ostm1|14628|osteopetrosis associated transmembrane protein 1	NM_172416|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK004546|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK050513|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK053664|Ostm1|14628|osteopetrosis associated transmembrane protein 1	BC057635|Ostm1|14628|osteopetrosis associated transmembrane protein 1
mm9_v1_chr7_+_120909509_120909519	0.03552	NFIX.p2	NM_145584|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr15_-_74502981_74503002	0.0345703	NFIX.p2	AF162777|Arc|11838|activity regulated cytoskeletal-associated protein	BC023127|Arc|11838|activity regulated cytoskeletal-associated protein	AK170446|Arc|11838|activity regulated cytoskeletal-associated protein	AK157822|Arc|11838|activity regulated cytoskeletal-associated protein	NM_018790|Arc|11838|activity regulated cytoskeletal-associated protein
mm9_v1_chr2_-_120229789_120229851	0.0342127	NFIX.p2	AK086738|Tmem87a|211499|transmembrane protein 87A	BC004047|Tmem87a|211499|transmembrane protein 87A	AK044591|Tmem87a|211499|transmembrane protein 87A	AK134268|Tmem87a|211499|transmembrane protein 87A	AK137137|Tmem87a|211499|transmembrane protein 87A	BC027354|Tmem87a|211499|transmembrane protein 87A	AK088559|Tmem87a|211499|transmembrane protein 87A	NM_001110496|Tmem87a|211499|transmembrane protein 87A	NM_001110497|Tmem87a|211499|transmembrane protein 87A	NM_173734|Tmem87a|211499|transmembrane protein 87A
mm9_v1_chr2_+_120229566_120229631	0.0339918	NFIX.p2	AK036238|Ganc|76051|glucosidase, alpha; neutral C	NM_172672|Ganc|76051|glucosidase, alpha; neutral C
mm9_v1_chr5_-_21371421_21371421	0.0337823	NFIX.p2	AF529192|Slc26a5|80979|solute carrier family 26, member 5	NM_030727|Slc26a5|80979|solute carrier family 26, member 5
mm9_v1_chr5_+_138229004_138229102	0.0335753	NFIX.p2	AK080079|Zcwpw1|381678|zinc finger, CW type with PWWP domain 1	NM_001005426|Zcwpw1|381678|zinc finger, CW type with PWWP domain 1	BC071186|Zcwpw1|381678|zinc finger, CW type with PWWP domain 1
mm9_v1_chr2_+_170557306_170557456	0.0335068	NFIX.p2	BC066822|Dok5|76829|docking protein 5	NM_001163686|Dok5|76829|docking protein 5	NM_029761|Dok5|76829|docking protein 5	AK044148|Dok5|76829|docking protein 5	AF418208|Dok5|76829|docking protein 5
mm9_v1_chr1_+_165859920_165859946	0.0334066	NFIX.p2	AK030824|Scyl3|240880|SCY1-like 3 (S. cerevisiae)	AK044100|Scyl3|240880|SCY1-like 3 (S. cerevisiae)
mm9_v1_chr17_-_7152648_7152744	0.0327672	NFIX.p2	AK005904|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	AK016473|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK161285|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK006083|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	NM_001083945|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)	AK076872|Rsph3b|100037282|radial spoke 3B homolog (Chlamydomonas)
mm9_v1_chr16_-_85173764_85173823	0.0326799	NFIX.p2	AK218334|App|11820|amyloid beta (A4) precursor protein	AY267348|App|11820|amyloid beta (A4) precursor protein	AK148439|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr12_+_50483869_50483993	0.0326759	NFIX.p2	AK132305|Foxg1|15228|forkhead box G1	NM_001160112|Foxg1|15228|forkhead box G1	NM_008241|Foxg1|15228|forkhead box G1	U36760|Foxg1|15228|forkhead box G1
mm9_v1_chr19_-_3907038_3907115	0.0325275	NFIX.p2	AB022322|Tcirg1|27060|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	AF218253|Tcirg1|27060|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
mm9_v1_chr2_+_105744791_105744850	0.0321499	NFIX.p2	AK005356|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011278|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	NM_028260|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011382|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK078300|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011466|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK015978|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011618|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011872|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011420|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK135670|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK009570|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK010075|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK012181|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK168202|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	BC008259|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
mm9_v1_chr9_+_107885355_107885423	0.0316537	NFIX.p2	BC094906|Uba7|74153|ubiquitin-like modifier activating enzyme 7	AK043882|Cdh29|320169|cadherin-like 29	AK084619|Cdh29|320169|cadherin-like 29	NM_177090|Cdh29|320169|cadherin-like 29
mm9_v1_chr2_+_34262372_34262384	0.0311817	NFIX.p2	AK042154|Mapkap1|227743|mitogen-activated protein kinase associated protein 1	AK148428|Mapkap1|227743|mitogen-activated protein kinase associated protein 1
mm9_v1_chr17_+_24869629_24869803	0.0310226	NFIX.p2	AK004280|Rpl3l|66211|ribosomal protein L3-like	NM_025425|Rpl3l|66211|ribosomal protein L3-like	AK002393|Rpl3l|66211|ribosomal protein L3-like	BC145876|Rpl3l|66211|ribosomal protein L3-like	BC145878|Rpl3l|66211|ribosomal protein L3-like
mm9_v1_chr15_+_40486577_40486623	0.0308832	NFIX.p2	AK046521|Zfpm2|22762|zinc finger protein, multitype 2	NM_011766|Zfpm2|22762|zinc finger protein, multitype 2	AF125166|Zfpm2|22762|zinc finger protein, multitype 2
mm9_v1_chr18_-_40379041_40379060	0.0308716	NFIX.p2	NM_023311|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr2_+_75670230_75670233	0.030537	NFIX.p2	AK031049|Agps|228061|alkylglycerone phosphate synthase	NM_172666|Agps|228061|alkylglycerone phosphate synthase
mm9_v1_chr11_-_5815126_5815140	0.0300711	NFIX.p2	BC011139|Gck|103988|glucokinase	AK142698|Gck|103988|glucokinase
mm9_v1_chr11_-_60717472_60717561	0.0298541	NFIX.p2	
mm9_v1_chr12_+_112404645_112404765	0.0295408	NFIX.p2	AK147304|Traf3|22031|TNF receptor-associated factor 3	NM_001048206|Traf3|22031|TNF receptor-associated factor 3	NM_011632|Traf3|22031|TNF receptor-associated factor 3	U21050|Traf3|22031|TNF receptor-associated factor 3
mm9_v1_chr5_+_114185777_114185845	0.0293273	NFIX.p2	NM_001010825|Ficd|231630|FIC domain containing	AK087477|Ficd|231630|FIC domain containing	BC106090|Ficd|231630|FIC domain containing
mm9_v1_chr13_+_32893929_32893948	0.0288246	NFIX.p2	AK041886|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr2_-_151458220_151458249	0.0286139	NFIX.p2	BC096541|Snph|241727|syntaphilin
mm9_v1_chr19_+_54019308_54019391	0.0275655	NFIX.p2	NM_019658|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)	AK146447|Shoc2|56392|soc-2 (suppressor of clear) homolog (C. elegans)
mm9_v1_chr7_-_88934302_88934363	0.0275495	NFIX.p2	AK014163|3110040N11Rik|67290|RIKEN cDNA 3110040N11 gene	BC027500|3110040N11Rik|67290|RIKEN cDNA 3110040N11 gene	AK019261|3110040N11Rik|67290|RIKEN cDNA 3110040N11 gene	NM_026077|3110040N11Rik|67290|RIKEN cDNA 3110040N11 gene	AK170168|3110040N11Rik|67290|RIKEN cDNA 3110040N11 gene	AK018003|3110040N11Rik|67290|RIKEN cDNA 3110040N11 gene
mm9_v1_chr7_-_52713370_52713456	0.0274279	NFIX.p2	
mm9_v1_chr3_+_101890431_101890567	0.0272842	NFIX.p2	AF068244|Casq2|12373|calsequestrin 2	NM_009814|Casq2|12373|calsequestrin 2	BC092229|Casq2|12373|calsequestrin 2	BC137668|Casq2|12373|calsequestrin 2	BC140959|Casq2|12373|calsequestrin 2	U91483|Casq2|12373|calsequestrin 2
mm9_v1_chr6_+_113554785_113554826	0.0268626	NFIX.p2	AK190298|6720456B07Rik|101314|RIKEN cDNA 6720456B07 gene	AK193342|6720456B07Rik|101314|RIKEN cDNA 6720456B07 gene
mm9_v1_chr5_+_118426721_118426771	0.0268074	NFIX.p2	BC021871|Fbxo21|231670|F-box protein 21
mm9_v1_chr6_-_113451922_113451926	0.0256835	NFIX.p2	AK031947|Prrt3|210673|proline-rich transmembrane protein 3
mm9_v1_chr14_-_52640348_52640407	0.0255662	NFIX.p2	BC096486|Zfp219|69890|zinc finger protein 219	AB063578|Zfp219|69890|zinc finger protein 219	NM_027248|Zfp219|69890|zinc finger protein 219
mm9_v1_chr2_+_30271577_30271577	0.0253264	NFIX.p2	AK150029|Ppp2r4|110854|protein phosphatase 2A, regulatory subunit B (PR 53)
mm9_v1_chr2_+_24910023_24910120	0.0251535	NFIX.p2	AJ278902|Nelf|56876|nasal embryonic LHRH factor
mm9_v1_chr12_-_113912266_113912513	0.0250966	NFIX.p2	AK154936|Akt1|11651|thymoma viral proto-oncogene 1	AK040758|Akt1|11651|thymoma viral proto-oncogene 1	X65687|Akt1|11651|thymoma viral proto-oncogene 1	BC066018|Akt1|11651|thymoma viral proto-oncogene 1	NM_001165894|Akt1|11651|thymoma viral proto-oncogene 1	NM_009652|Akt1|11651|thymoma viral proto-oncogene 1
mm9_v1_chr7_+_134985164_134985421	0.0248498	NFIX.p2	AK145909|Stx4a|20909|syntaxin 4A (placental)	BC011491|Stx4a|20909|syntaxin 4A (placental)	NM_009294|Stx4a|20909|syntaxin 4A (placental)	AK161971|Stx4a|20909|syntaxin 4A (placental)	BC052023|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr7_+_133903118_133903185	0.0246166	NFIX.p2	NM_011952|Mapk3|26417|mitogen-activated protein kinase 3	BC029712|Mapk3|26417|mitogen-activated protein kinase 3	Z14249|Mapk3|26417|mitogen-activated protein kinase 3
mm9_v1_chr19_+_45438212_45438344	0.0246144	NFIX.p2	NM_001037758|Btrc|12234|beta-transducin repeat containing protein	NM_009771|Btrc|12234|beta-transducin repeat containing protein	AK220183|Btrc|12234|beta-transducin repeat containing protein	AK145624|Btrc|12234|beta-transducin repeat containing protein	AK052317|Btrc|12234|beta-transducin repeat containing protein	AK083257|Btrc|12234|beta-transducin repeat containing protein	AF081887|Btrc|12234|beta-transducin repeat containing protein	AK032221|Btrc|12234|beta-transducin repeat containing protein	AK145091|Btrc|12234|beta-transducin repeat containing protein	BC052879|Btrc|12234|beta-transducin repeat containing protein	BC003989|Btrc|12234|beta-transducin repeat containing protein	AF099932|Btrc|12234|beta-transducin repeat containing protein	AF110396|Btrc|12234|beta-transducin repeat containing protein	AF112979|Btrc|12234|beta-transducin repeat containing protein	AK180045|Btrc|12234|beta-transducin repeat containing protein	AK188552|Btrc|12234|beta-transducin repeat containing protein	AK189588|Btrc|12234|beta-transducin repeat containing protein
mm9_v1_chr16_+_91373008_91373145	0.0238714	NFIX.p2	NM_001110498|Ifnar2|15976|interferon (alpha and beta) receptor 2	NM_010509|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK139169|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK010952|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK003185|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150386|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK152878|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK153317|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151474|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151777|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151493|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150597|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09864|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09865|Ifnar2|15976|interferon (alpha and beta) receptor 2
mm9_v1_chr10_+_80720251_80720289	0.0227652	NFIX.p2	AK079816|Matk|17179|megakaryocyte-associated tyrosine kinase	U05210|Matk|17179|megakaryocyte-associated tyrosine kinase	L27738|Matk|17179|megakaryocyte-associated tyrosine kinase	NM_010768|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr5_+_105948370_105948518	0.022392	NFIX.p2	AK171313|Lrrc8c|100604|leucine rich repeat containing 8 family, member C	AK089024|Lrrc8c|100604|leucine rich repeat containing 8 family, member C	AK169492|Lrrc8c|100604|leucine rich repeat containing 8 family, member C	AK142337|Lrrc8c|100604|leucine rich repeat containing 8 family, member C	BC026572|Lrrc8c|100604|leucine rich repeat containing 8 family, member C	AB081508|Lrrc8c|100604|leucine rich repeat containing 8 family, member C	NM_133897|Lrrc8c|100604|leucine rich repeat containing 8 family, member C
mm9_v1_chr2_+_155207542_155207579	0.0218457	NFIX.p2	AK170132|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr12_-_70994089_70994191	0.0217967	NFIX.p2	BC048173|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	AK045031|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	AK053775|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	NM_201519|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5
mm9_v1_chr15_-_97597988_97598129	0.0215766	NFIX.p2	AK142594|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK044566|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK169430|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK162003|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	BC020532|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177810|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177811|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_144850|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr14_+_31814578_31814618	0.0211189	NFIX.p2	NM_001165930|Glt8d1|76485|glycosyltransferase 8 domain containing 1	AK077388|Glt8d1|76485|glycosyltransferase 8 domain containing 1	NM_029626|Glt8d1|76485|glycosyltransferase 8 domain containing 1
mm9_v1_chr4_-_107704544_107704694	0.0210904	NFIX.p2	BC052487|Podn|242608|podocan	AK034987|Podn|242608|podocan	AK161018|Podn|242608|podocan	AY313606|Podn|242608|podocan	NM_172874|Podn|242608|podocan
mm9_v1_chr15_-_98661877_98661941	0.0210479	NFIX.p2	AK159583|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	BC086660|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	AK138324|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	AF036535|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit	NM_016781|Prkag1|19082|protein kinase, AMP-activated, gamma 1 non-catalytic subunit
mm9_v1_chr11_-_4646742_4646780	0.0209118	NFIX.p2	BC104356|Cabp7|192650|calcium binding protein 7	BC104357|Cabp7|192650|calcium binding protein 7	AF419324|Cabp7|192650|calcium binding protein 7	NM_138948|Cabp7|192650|calcium binding protein 7
mm9_v1_chr9_-_89517823_89517962	0.0203457	NFIX.p2	AF529169|AF529169|209743|cDNA sequence AF529169	NM_153509|AF529169|209743|cDNA sequence AF529169	AK035830|AF529169|209743|cDNA sequence AF529169
mm9_v1_chr8_-_26212242_26212282	0.0198813	NFIX.p2	AK042324|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	AK078212|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	NM_031257|Plekha2|83436|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
mm9_v1_chr11_+_3414686_3414704	0.0198162	NFIX.p2	AK079576|Selm|114679|selenoprotein M	NM_053267|Selm|114679|selenoprotein M
mm9_v1_chr11_+_3414983_3415036	0.0191487	NFIX.p2	BC019742|Selm|114679|selenoprotein M
mm9_v1_chr7_-_116226796_116226848	0.0191432	NFIX.p2	AK053760|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK082275|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK134663|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK149334|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK038724|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	AK138641|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	NM_001038624|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)	NM_178780|Ric3|320360|resistance to inhibitors of cholinesterase 3 homolog (C. elegans)
mm9_v1_chr2_-_27330682_27330707	0.0190204	NFIX.p2	BC031536|Brd3|67382|bromodomain containing 3
mm9_v1_chr7_+_138704223_138704357	0.0187686	NFIX.p2	AF149822|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK190470|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr15_+_58247107_58247243	0.0181716	NFIX.p2	AK122297|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed	DQ228142|D15Ertd621e|210998|DNA segment, Chr 15, ERATO Doi 621, expressed
mm9_v1_chr1_-_184447489_184447526	0.0177687	NFIX.p2	Y10139|Capn2|12334|calpain 2
mm9_v1_chr10_+_62383400_62383491	0.0174551	NFIX.p2	BC062168|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	BC138983|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	BC138984|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	BC025015|Slc25a16|73132|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm9_v1_chrX_-_96086314_96086363	0.0171637	NFIX.p2	AK031419|Ophn1|94190|oligophrenin 1	AK036038|Ophn1|94190|oligophrenin 1	AK043239|Ophn1|94190|oligophrenin 1	AK048153|Ophn1|94190|oligophrenin 1	AK166392|Ophn1|94190|oligophrenin 1	NM_052976|Ophn1|94190|oligophrenin 1	AK039304|Ophn1|94190|oligophrenin 1
mm9_v1_chr3_+_138190223_138190257	0.0165628	NFIX.p2	AK167097|Eif4e|13684|eukaryotic translation initiation factor 4E	M61731|Eif4e|13684|eukaryotic translation initiation factor 4E	AK082867|Eif4e|13684|eukaryotic translation initiation factor 4E	AK146757|Eif4e|13684|eukaryotic translation initiation factor 4E	BC010759|Eif4e|13684|eukaryotic translation initiation factor 4E	BC085087|Eif4e|13684|eukaryotic translation initiation factor 4E
mm9_v1_chr17_+_32643402_32643407	0.0165265	NFIX.p2	NM_001101445|Cyp4f17|208285|cytochrome P450, family 4, subfamily f, polypeptide 17
mm9_v1_chr7_+_25862223_25862340	0.0164866	NFIX.p2	AK143997|Zfp574|232976|zinc finger protein 574	NM_001168506|Zfp574|232976|zinc finger protein 574	NM_175477|Zfp574|232976|zinc finger protein 574	AK053744|Zfp574|232976|zinc finger protein 574	BC059044|Zfp574|232976|zinc finger protein 574	AK042074|Zfp574|232976|zinc finger protein 574	AK170243|Zfp574|232976|zinc finger protein 574	BC021833|Zfp574|232976|zinc finger protein 574	BC094354|Zfp574|232976|zinc finger protein 574
mm9_v1_chr7_+_148043261_148043383	0.0158073	NFIX.p2	AK167746|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	NM_053194|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	AF288813|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	BC022917|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	AK155282|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	AK165536|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	AK169367|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	AK031466|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	AK080192|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)	AK171093|Ric8|101489|resistance to inhibitors of cholinesterase 8 homolog (C. elegans)
mm9_v1_chr4_+_109650629_109650657	0.0156388	NFIX.p2	NM_172296|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2	AK080774|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2	AY145837|Dmrta2|242620|doublesex and mab-3 related transcription factor like family A2
mm9_v1_chr5_+_123465011_123465126	0.0152323	NFIX.p2	AK052573|Orai1|109305|ORAI calcium release-activated calcium modulator 1	NM_175423|Orai1|109305|ORAI calcium release-activated calcium modulator 1
mm9_v1_chr9_-_64101429_64101455	0.0151326	NFIX.p2	AK154793|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr3_-_40650624_40650795	0.0148817	NFIX.p2	BC010483|Mfsd8|72175|major facilitator superfamily domain containing 8	AK013144|Mfsd8|72175|major facilitator superfamily domain containing 8	BC113183|Mfsd8|72175|major facilitator superfamily domain containing 8	BC113790|Mfsd8|72175|major facilitator superfamily domain containing 8	AK035291|Mfsd8|72175|major facilitator superfamily domain containing 8	AK077957|Mfsd8|72175|major facilitator superfamily domain containing 8	NM_028140|Mfsd8|72175|major facilitator superfamily domain containing 8	AK032080|Mfsd8|72175|major facilitator superfamily domain containing 8
mm9_v1_chr12_-_113205152_113205166	0.0144513	NFIX.p2	BC055712|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr14_+_27457610_27457865	0.0141263	NFIX.p2	AK013892|Arf4|11843|ADP-ribosylation factor 4	AK002302|Arf4|11843|ADP-ribosylation factor 4	AK168793|Arf4|11843|ADP-ribosylation factor 4	NM_007479|Arf4|11843|ADP-ribosylation factor 4	AK081686|Arf4|11843|ADP-ribosylation factor 4	AK153011|Arf4|11843|ADP-ribosylation factor 4	BC115650|Arf4|11843|ADP-ribosylation factor 4	BC115651|Arf4|11843|ADP-ribosylation factor 4	D87901|Arf4|11843|ADP-ribosylation factor 4
mm9_v1_chr1_+_132613903_132614127	0.0140051	NFIX.p2	AK036938|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK036991|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	NM_178691|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC139034|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK044678|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	BC099948|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)	AK053730|Yod1|226418|YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)
mm9_v1_chr11_+_6191599_6191621	0.0138979	NFIX.p2	AK147289|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	NM_010956|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)	AK169286|Ogdh|18293|oxoglutarate dehydrogenase (lipoamide)
mm9_v1_chr13_-_115722244_115722337	0.012138	NFIX.p2	Z29987|Itga2|16398|integrin alpha 2	BC065139|Itga2|16398|integrin alpha 2	NM_008396|Itga2|16398|integrin alpha 2	AK051050|Itga2|16398|integrin alpha 2	AK156604|Itga2|16398|integrin alpha 2	AK036572|Itga2|16398|integrin alpha 2
mm9_v1_chr11_+_20443315_20443422	0.0120987	NFIX.p2	AB041541|Sertad2|58172|SERTA domain containing 2	BC014726|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr12_+_75065534_75065545	0.0120263	NFIX.p2	BC030456|Snapc1|75627|small nuclear RNA activating complex, polypeptide 1
mm9_v1_chr12_-_102956711_102956734	0.0118096	NFIX.p2	NM_001082976|Tc2n|74413|tandem C2 domains, nuclear	AK136558|Tc2n|74413|tandem C2 domains, nuclear
mm9_v1_chr12_+_35731853_35731876	0.011735	NFIX.p2	AK154425|Snx13|217463|sorting nexin 13	NM_001014973|Snx13|217463|sorting nexin 13	AK166180|Snx13|217463|sorting nexin 13	BC067201|Snx13|217463|sorting nexin 13
mm9_v1_chr7_-_150970404_150970404	0.0114149	NFIX.p2	AK133657|Mrgpre|244238|MAS-related GPR, member E	NM_175534|Mrgpre|244238|MAS-related GPR, member E
mm9_v1_chr13_-_99086890_99086960	0.0111396	NFIX.p2	BC080837|Btf3|218490|basic transcription factor 3	BC008233|Btf3|218490|basic transcription factor 3	BC064010|Btf3|218490|basic transcription factor 3	NM_145455|Btf3|218490|basic transcription factor 3	AK160227|Btf3|218490|basic transcription factor 3	AK139664|Btf3|218490|basic transcription factor 3	AK147171|Btf3|218490|basic transcription factor 3	AK146332|Btf3|218490|basic transcription factor 3	NM_001170540|Btf3|218490|basic transcription factor 3
mm9_v1_chr3_-_117063317_117063389	0.0107524	NFIX.p2	BC082323|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137701|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137702|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK129149|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chrX_+_132528317_132528387	0.010479	NFIX.p2	AK018307|6530401D17Rik|76219|RIKEN cDNA 6530401D17 gene	NM_029823|2900062L11Rik|76976|RIKEN cDNA 2900062L11 gene	AK013740|2900062L11Rik|76976|RIKEN cDNA 2900062L11 gene	BC030351|2900062L11Rik|76976|RIKEN cDNA 2900062L11 gene	AK077432|2900062L11Rik|76976|RIKEN cDNA 2900062L11 gene
mm9_v1_chr16_-_96303958_96304070	0.0104391	NFIX.p2	BC095940|Brwd1|93871|bromodomain and WD repeat domain containing 1	BC145265|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292467|Brwd1|93871|bromodomain and WD repeat domain containing 1	AJ292468|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK030493|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_001103179|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_145125|Brwd1|93871|bromodomain and WD repeat domain containing 1	NM_176928|Brwd1|93871|bromodomain and WD repeat domain containing 1	AK051870|Brwd1|93871|bromodomain and WD repeat domain containing 1
mm9_v1_chr12_+_35731926_35731945	0.0100972	NFIX.p2	AK164161|Snx13|217463|sorting nexin 13
mm9_v1_chr8_+_107115389_107115400	0.0100679	NFIX.p2	BC094946|Pdp2|382051|pyruvate dehyrogenase phosphatase catalytic subunit 2
mm9_v1_chr8_+_97296110_97296164	0.00989791	NFIX.p2	BC054838|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	BC057891|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	BC006650|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	AK040220|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	AF010586|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1	U92565|Cx3cl1|20312|chemokine (C-X3-C motif) ligand 1
mm9_v1_chr19_-_3904607_3904685	0.00985593	NFIX.p2	AK189246|Tcirg1|27060|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	AK201621|Tcirg1|27060|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
mm9_v1_chr4_+_137772474_137772594	0.00963643	NFIX.p2	AK150784|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK166161|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_001122896|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	NM_010470|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK004938|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK028181|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK050234|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK075725|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK043260|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK161041|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC020024|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	BC107687|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr10_-_80131318_80131466	0.00899741	NFIX.p2	AK164278|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK207448|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK008277|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr12_-_29435113_29435270	0.00885117	NFIX.p2	AK178189|Ttc15|217449|tetratricopeptide repeat domain 15	AK031763|Ttc15|217449|tetratricopeptide repeat domain 15	AK086217|Ttc15|217449|tetratricopeptide repeat domain 15	BC024077|Ttc15|217449|tetratricopeptide repeat domain 15	BC030887|Ttc15|217449|tetratricopeptide repeat domain 15	AK147985|Ttc15|217449|tetratricopeptide repeat domain 15	NM_001161410|Ttc15|217449|tetratricopeptide repeat domain 15	AK132166|Ttc15|217449|tetratricopeptide repeat domain 15
mm9_v1_chr8_-_109417431_109417531	0.00870615	NFIX.p2	AK030924|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK165993|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	NM_145412|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK087721|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)	AK088257|Chtf8|214987|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)
mm9_v1_chr3_-_142058595_142058659	0.00863415	NFIX.p2	AK147999|Pdlim5|56376|PDZ and LIM domain 5	AK003194|Pdlim5|56376|PDZ and LIM domain 5	AK089779|Pdlim5|56376|PDZ and LIM domain 5	NM_001190852|Pdlim5|56376|PDZ and LIM domain 5	NM_001190853|Pdlim5|56376|PDZ and LIM domain 5	NM_001190854|Pdlim5|56376|PDZ and LIM domain 5	NM_001190855|Pdlim5|56376|PDZ and LIM domain 5	NM_001190856|Pdlim5|56376|PDZ and LIM domain 5	NM_019808|Pdlim5|56376|PDZ and LIM domain 5	NM_019809|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr4_+_124743933_124743973	0.00791456	NFIX.p2	AK010794|Snip1|76793|Smad nuclear interacting protein 1	AK040571|Snip1|76793|Smad nuclear interacting protein 1	AK049254|Snip1|76793|Smad nuclear interacting protein 1	AK049318|Snip1|76793|Smad nuclear interacting protein 1	AK143801|Snip1|76793|Smad nuclear interacting protein 1	NM_175246|Snip1|76793|Smad nuclear interacting protein 1	AK078163|Snip1|76793|Smad nuclear interacting protein 1	AK132768|Snip1|76793|Smad nuclear interacting protein 1	BC064067|Snip1|76793|Smad nuclear interacting protein 1
mm9_v1_chr17_-_26227104_26227112	0.00744363	NFIX.p2	AF155575|Decr2|26378|2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	NM_011933|Decr2|26378|2-4-dienoyl-Coenzyme A reductase 2, peroxisomal
mm9_v1_chr5_-_5694033_5694105	0.00710019	NFIX.p2	AK145468|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK166607|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK162343|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK165644|Steap2|74051|six transmembrane epithelial antigen of prostate 2	AK089927|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103156|Steap2|74051|six transmembrane epithelial antigen of prostate 2	NM_001103157|Steap2|74051|six transmembrane epithelial antigen of prostate 2
mm9_v1_chr2_+_103867951_103868054	0.00670133	NFIX.p2	NM_020593|Fbxo3|57443|F-box protein 3	NM_212433|Fbxo3|57443|F-box protein 3	AK028048|Fbxo3|57443|F-box protein 3	AK031428|Fbxo3|57443|F-box protein 3	AK049870|Fbxo3|57443|F-box protein 3	BC058253|Fbxo3|57443|F-box protein 3	AK085686|Fbxo3|57443|F-box protein 3	BC050758|Fbxo3|57443|F-box protein 3	AK004544|Fbxo3|57443|F-box protein 3	AK050195|Fbxo3|57443|F-box protein 3	AK150097|Fbxo3|57443|F-box protein 3	AK151130|Fbxo3|57443|F-box protein 3	AK151857|Fbxo3|57443|F-box protein 3	AK152780|Fbxo3|57443|F-box protein 3	AK207976|Fbxo3|57443|F-box protein 3	AK215292|Fbxo3|57443|F-box protein 3	AK215501|Fbxo3|57443|F-box protein 3	AF233226|Fbxo3|57443|F-box protein 3	AK019550|Fbxo3|57443|F-box protein 3	AK031185|Fbxo3|57443|F-box protein 3	AK009024|Fbxo3|57443|F-box protein 3	AK167075|Fbxo3|57443|F-box protein 3	BC010212|Fbxo3|57443|F-box protein 3
mm9_v1_chr11_-_93746982_93747028	0.00649153	NFIX.p2	AK154637|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)	AK032265|Utp18|217109|UTP18, small subunit (SSU) processome component, homolog (yeast)
mm9_v1_chr13_-_69750195_69750231	0.00644326	NFIX.p2	BC115468|Srd5a1|78925|steroid 5 alpha-reductase 1	BC115469|Srd5a1|78925|steroid 5 alpha-reductase 1	AK082819|Srd5a1|78925|steroid 5 alpha-reductase 1
mm9_v1_chr17_+_31433159_31433202	0.00621448	NFIX.p2	AK143636|Slc37a1|224674|solute carrier family 37 (glycerol-3-phosphate transporter), member 1	AK153706|Slc37a1|224674|solute carrier family 37 (glycerol-3-phosphate transporter), member 1
mm9_v1_chr14_-_52935887_52935914	0.00596446	NFIX.p2	AK077601|Sall2|50524|sal-like 2 (Drosophila)
mm9_v1_chr9_-_45762994_45763069	0.00589426	NFIX.p2	BC051101|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr7_+_130267398_130267398	0.00569197	NFIX.p2	NM_144925|Tnrc6a|233833|trinucleotide repeat containing 6a
mm9_v1_chr17_-_14831058_14831092	0.00487283	NFIX.p2	BC053702|Thbs2|21826|thrombospondin 2
mm9_v1_chr3_+_79395280_79395367	0.00479208	NFIX.p2	AK150520|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK151091|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	BC019778|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	NM_026352|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	BC011499|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK016221|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK013919|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK051597|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)	AK003402|Ppid|67738|peptidylprolyl isomerase D (cyclophilin D)
mm9_v1_chr1_-_173290841_173290950	0.00473659	NFIX.p2	BC141196|Klhdc9|68874|kelch domain containing 9	AK140290|Klhdc9|68874|kelch domain containing 9	NM_001033039|Klhdc9|68874|kelch domain containing 9
mm9_v1_chr1_+_145586478_145586478	0.004593	NFIX.p2	AK005853|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038593|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr16_+_90220986_90221006	0.00443825	NFIX.p2	BC048874|Sod1|20655|superoxide dismutase 1, soluble	NM_011434|Sod1|20655|superoxide dismutase 1, soluble	AK080908|Sod1|20655|superoxide dismutase 1, soluble	AK080929|Sod1|20655|superoxide dismutase 1, soluble	AK086878|Sod1|20655|superoxide dismutase 1, soluble	BC086886|Sod1|20655|superoxide dismutase 1, soluble
mm9_v1_chr10_-_122513438_122513438	0.00355069	NFIX.p2	AK161217|Mon2|67074|MON2 homolog (yeast)
mm9_v1_chr19_-_7093919_7093958	0.00353322	NFIX.p2	BC066803|Fermt3|108101|fermitin family homolog 3 (Drosophila)	BC032204|Fermt3|108101|fermitin family homolog 3 (Drosophila)	AK142912|Fermt3|108101|fermitin family homolog 3 (Drosophila)	NM_153795|Fermt3|108101|fermitin family homolog 3 (Drosophila)
mm9_v1_chr11_-_51420336_51420404	0.00303063	NFIX.p2	BC043069|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	D90151|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	L36663|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK076132|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK013384|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK013709|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	AK165609|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	NM_001048061|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	NM_010448|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr8_+_126473315_126473334	0.00294887	NFIX.p2	
mm9_v1_chr5_+_118426774_118426787	0.00243317	NFIX.p2	AK049723|Fbxo21|231670|F-box protein 21	NM_145564|Fbxo21|231670|F-box protein 21	AK076521|Fbxo21|231670|F-box protein 21
mm9_v1_chr8_-_25785199_25785226	0.00162022	NFIX.p2	BC144841|Adam18|13524|a disintegrin and metallopeptidase domain 18	BC145751|Adam18|13524|a disintegrin and metallopeptidase domain 18	BC051136|Adam18|13524|a disintegrin and metallopeptidase domain 18	AF167405|Adam18|13524|a disintegrin and metallopeptidase domain 18	AK076633|Adam18|13524|a disintegrin and metallopeptidase domain 18	NM_010084|Adam18|13524|a disintegrin and metallopeptidase domain 18
mm9_v1_chr12_+_56499761_56499884	0.00122621	NFIX.p2	NM_011968|Psma6|26443|proteasome (prosome, macropain) subunit, alpha type 6	AK152915|Psma6|26443|proteasome (prosome, macropain) subunit, alpha type 6	AK088143|Psma6|26443|proteasome (prosome, macropain) subunit, alpha type 6	AK161662|Psma6|26443|proteasome (prosome, macropain) subunit, alpha type 6	U60288|Psma6|26443|proteasome (prosome, macropain) subunit, alpha type 6	BC086685|Psma6|26443|proteasome (prosome, macropain) subunit, alpha type 6
mm9_v1_chr18_+_14941735_14941757	0.00103305	NFIX.p2	AK012135|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor	NM_001100449|Taf4b|72504|TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr4_+_49644923_49645030	0.000950198	NFIX.p2	NM_001163263|Rnf20|109331|ring finger protein 20	NM_182999|Rnf20|109331|ring finger protein 20	AK053783|Rnf20|109331|ring finger protein 20	AK085436|Rnf20|109331|ring finger protein 20	AK139883|Rnf20|109331|ring finger protein 20	AK048862|Rnf20|109331|ring finger protein 20	AK051278|Rnf20|109331|ring finger protein 20	BC052482|Rnf20|109331|ring finger protein 20	AK087860|Rnf20|109331|ring finger protein 20	AK220492|Rnf20|109331|ring finger protein 20	AK082529|Rnf20|109331|ring finger protein 20
mm9_v1_chr12_-_70993995_70994059	0.000558249	NFIX.p2	AK019468|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	BC040381|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	AK032123|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5
mm9_v1_chr5_+_35621214_35621214	0.000468854	NFIX.p2	NM_007418|Adra2c|11553|adrenergic receptor, alpha 2c
mm9_v1_chr3_+_58380651_58380703	0.000448306	NFIX.p2	BC038867|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene
mm9_v1_chr2_+_4322020_4322021	0.000353537	NFIX.p2	BC082808|Frmd4a|209630|FERM domain containing 4A	NM_001177843|Frmd4a|209630|FERM domain containing 4A
