mm9_v1_chr8_+_128519295_128519355	16.8819	NHLH1,2.p2	BC003729|Kcnk1|16525|potassium channel, subfamily K, member 1
mm9_v1_chr7_+_53651811_53651938	16.6511	NHLH1,2.p2	NM_008421|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1	AK147476|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1	AK147682|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1	NM_001112739|Kcnc1|16502|potassium voltage gated channel, Shaw-related subfamily, member 1
mm9_v1_chr7_+_129432585_129432762	15.3092	NHLH1,2.p2	NM_008855|Prkcb|18751|protein kinase C, beta	AK051862|Prkcb|18751|protein kinase C, beta
mm9_v1_chr8_+_128519001_128519113	14.9282	NHLH1,2.p2	NM_008430|Kcnk1|16525|potassium channel, subfamily K, member 1	AF033017|Kcnk1|16525|potassium channel, subfamily K, member 1	AK137224|Kcnk1|16525|potassium channel, subfamily K, member 1
mm9_v1_chr10_+_122115755_122115904	14.366	NHLH1,2.p2	AK043121|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_001110218|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	NM_176919|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK040207|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK077422|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK134804|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK051434|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK220260|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr8_-_89996474_89996540	14.1383	NHLH1,2.p2	AK158818|Cbln1|12404|cerebellin 1 precursor protein	NM_019626|Cbln1|12404|cerebellin 1 precursor protein	AK158885|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr9_+_69137694_69137758	13.4434	NHLH1,2.p2	AK155827|Rora|19883|RAR-related orphan receptor alpha	BC003757|Rora|19883|RAR-related orphan receptor alpha	S82720|Rora|19883|RAR-related orphan receptor alpha	AK149294|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr2_-_162486792_162486829	13.4346	NHLH1,2.p2	AF162856|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	AF162857|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	AF152556|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr2_+_180332926_180333016	12.8207	NHLH1,2.p2	NM_009936|Col9a3|12841|collagen, type IX, alpha 3	AK030350|Col9a3|12841|collagen, type IX, alpha 3	AF349718|Col9a3|12841|collagen, type IX, alpha 3
mm9_v1_chr5_-_108978950_108979047	12.8086	NHLH1,2.p2	BC014803|Cplx1|12889|complexin 1	D38614|Cplx1|12889|complexin 1	AK158166|Cplx1|12889|complexin 1	AK134820|Cplx1|12889|complexin 1	AK159026|Cplx1|12889|complexin 1	NM_007756|Cplx1|12889|complexin 1
mm9_v1_chr18_+_82723920_82724127	11.7778	NHLH1,2.p2	AK005129|Mbp|17196|myelin basic protein	M15060|Mbp|17196|myelin basic protein	BC004704|Mbp|17196|myelin basic protein	DQ887821|Mbp|17196|myelin basic protein	M15062|Mbp|17196|myelin basic protein	AK189263|Mbp|17196|myelin basic protein	AK190490|Mbp|17196|myelin basic protein	AK191010|Mbp|17196|myelin basic protein	AK195158|Mbp|17196|myelin basic protein	AK197274|Mbp|17196|myelin basic protein	AK199946|Mbp|17196|myelin basic protein
mm9_v1_chr2_+_156439426_156439464	11.5662	NHLH1,2.p2	NM_146128|Dlgap4|228836|discs, large homolog-associated protein 4 (Drosophila)
mm9_v1_chr7_+_129432810_129432849	11.2462	NHLH1,2.p2	X53532|Prkcb|18751|protein kinase C, beta	BC127083|Prkcb|18751|protein kinase C, beta	X59274|Prkcb|18751|protein kinase C, beta
mm9_v1_chr4_-_133054355_133054483	10.8828	NHLH1,2.p2	BC049168|Trnp1|69539|TMF1-regulated nuclear protein 1	NM_001081156|Trnp1|69539|TMF1-regulated nuclear protein 1
mm9_v1_chr10_-_6980199_6980474	10.8261	NHLH1,2.p2	AK042973|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	NM_133485|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK047607|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AK085997|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c	AF407167|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr2_-_25174498_25174656	10.8016	NHLH1,2.p2	D10028|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	BC039157|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK158175|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK036204|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	AK158140|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr1_-_166387998_166388161	10.7518	NHLH1,2.p2	X16646|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC094070|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	BC027319|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK005071|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK140862|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK160405|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	AK161891|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr8_-_113917651_113917728	10.4508	NHLH1,2.p2	AY660882|Fa2h|338521|fatty acid 2-hydroxylase	BC046985|Fa2h|338521|fatty acid 2-hydroxylase	BC111912|Fa2h|338521|fatty acid 2-hydroxylase	BC128080|Fa2h|338521|fatty acid 2-hydroxylase	BC128081|Fa2h|338521|fatty acid 2-hydroxylase	AK090338|Fa2h|338521|fatty acid 2-hydroxylase	AK033736|Fa2h|338521|fatty acid 2-hydroxylase	AK161502|Fa2h|338521|fatty acid 2-hydroxylase	NM_178086|Fa2h|338521|fatty acid 2-hydroxylase
mm9_v1_chr2_-_25174662_25174740	10.0634	NHLH1,2.p2	AK090286|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177656|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_001177657|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)	NM_008169|Grin1|14810|glutamate receptor, ionotropic, NMDA1 (zeta 1)
mm9_v1_chr5_+_137506122_137506164	9.83226	NHLH1,2.p2	NM_001039385|Vgf|381677|VGF nerve growth factor inducible
mm9_v1_chr10_-_6979959_6980009	9.77441	NHLH1,2.p2	BC055717|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr2_+_25118144_25118184	9.13927	NHLH1,2.p2	AK165772|Tprn|97031|taperin
mm9_v1_chr4_-_63707964_63707973	8.80257	NHLH1,2.p2	AK085667|Tnc|21923|tenascin C
mm9_v1_chr10_+_122116066_122116255	8.53276	NHLH1,2.p2	AK040194|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK029461|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)	AK150309|Ppm1h|319468|protein phosphatase 1H (PP2C domain containing)
mm9_v1_chr2_+_146047656_146047846	8.50121	NHLH1,2.p2	BC051240|Insm1|53626|insulinoma-associated 1	NM_016889|Insm1|53626|insulinoma-associated 1	AF044669|Insm1|53626|insulinoma-associated 1	BC082809|Insm1|53626|insulinoma-associated 1
mm9_v1_chr19_+_23833310_23833547	8.46936	NHLH1,2.p2	NM_177034|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147583|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	AK147623|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1	BC141181|Apba1|319924|amyloid beta (A4) precursor protein binding, family A, member 1
mm9_v1_chr13_-_112599181_112599204	8.39053	NHLH1,2.p2	AB014614|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	AF117340|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1	NM_011945|Map3k1|26401|mitogen-activated protein kinase kinase kinase 1
mm9_v1_chr10_+_98377759_98377828	8.29916	NHLH1,2.p2	AK133920|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	NM_026482|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170163|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	BC024831|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK170926|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr10_+_78243239_78243246	8.19614	NHLH1,2.p2	AK159197|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	NM_009200|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	D83262|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
mm9_v1_chr5_-_34630913_34631012	7.8682	NHLH1,2.p2	BC139050|Zfyve28|231125|zinc finger, FYVE domain containing 28	BC139051|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK129414|Zfyve28|231125|zinc finger, FYVE domain containing 28	NM_001015039|Zfyve28|231125|zinc finger, FYVE domain containing 28	AK036334|Zfyve28|231125|zinc finger, FYVE domain containing 28
mm9_v1_chr9_-_53823107_53823121	7.64386	NHLH1,2.p2	AK132239|Elmod1|270162|ELMO domain containing 1	NM_177769|Elmod1|270162|ELMO domain containing 1
mm9_v1_chr1_-_84692750_84692795	7.36799	NHLH1,2.p2	BC034634|Dner|227325|delta/notch-like EGF-related receptor	NM_152915|Dner|227325|delta/notch-like EGF-related receptor
mm9_v1_chr14_-_103381744_103381856	7.30359	NHLH1,2.p2	BC116647|Kctd12|239217|potassium channel tetramerisation domain containing 12	BC116648|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK035535|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK172581|Kctd12|239217|potassium channel tetramerisation domain containing 12	NM_177715|Kctd12|239217|potassium channel tetramerisation domain containing 12	AK087895|Kctd12|239217|potassium channel tetramerisation domain containing 12
mm9_v1_chr19_-_59150001_59150173	7.22969	NHLH1,2.p2	EF055486|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene
mm9_v1_chr4_-_139802683_139802745	7.19349	NHLH1,2.p2	BC055811|Igsf21|230868|immunoglobin superfamily, member 21	AK137439|Igsf21|230868|immunoglobin superfamily, member 21	NM_198610|Igsf21|230868|immunoglobin superfamily, member 21
mm9_v1_chr3_+_31048841_31049071	7.04751	NHLH1,2.p2	NM_008770|Cldn11|18417|claudin 11	AK005088|Cldn11|18417|claudin 11	AK005171|Cldn11|18417|claudin 11	AK161698|Cldn11|18417|claudin 11	BC021659|Cldn11|18417|claudin 11	U19582|Cldn11|18417|claudin 11	AF124426|Cldn11|18417|claudin 11
mm9_v1_chrX_+_162676910_162677002	6.94455	NHLH1,2.p2	BC025165|Gpm6b|14758|glycoprotein m6b	AK016567|Gpm6b|14758|glycoprotein m6b	AK020224|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr4_+_129985957_129986021	6.90486	NHLH1,2.p2	AK142156|Fabp3|14077|fatty acid binding protein 3, muscle and heart	BC089542|Fabp3|14077|fatty acid binding protein 3, muscle and heart	BC002082|Fabp3|14077|fatty acid binding protein 3, muscle and heart	X14961|Fabp3|14077|fatty acid binding protein 3, muscle and heart	NM_010174|Fabp3|14077|fatty acid binding protein 3, muscle and heart	U02883|Fabp3|14077|fatty acid binding protein 3, muscle and heart
mm9_v1_chrX_+_7496899_7497045	6.6073	NHLH1,2.p2	AF181560|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	NM_013892|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AF293356|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AK076137|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	AK002969|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor	BC012263|Pcsk1n|30052|proprotein convertase subtilisin/kexin type 1 inhibitor
mm9_v1_chr2_+_158201373_158201515	6.58798	NHLH1,2.p2	NM_175692|Snhg11|319317|small nucleolar RNA host gene 11	AK157790|Snhg11|319317|small nucleolar RNA host gene 11	AK080745|Snhg11|319317|small nucleolar RNA host gene 11	AK133939|Snhg11|319317|small nucleolar RNA host gene 11	AK138473|Snhg11|319317|small nucleolar RNA host gene 11	BC049241|Snhg11|319317|small nucleolar RNA host gene 11	BC030414|Snhg11|319317|small nucleolar RNA host gene 11
mm9_v1_chr8_-_112692071_112692144	6.58355	NHLH1,2.p2	BC017646|Calb2|12308|calbindin 2	NM_007586|Calb2|12308|calbindin 2	AK032171|Calb2|12308|calbindin 2
mm9_v1_chr12_+_101437735_101437896	6.48724	NHLH1,2.p2	AK150978|Calm1|12313|calmodulin 1	AK151784|Calm1|12313|calmodulin 1	AK151992|Calm1|12313|calmodulin 1	AK159762|Calm1|12313|calmodulin 1	AK160057|Calm1|12313|calmodulin 1	AK160508|Calm1|12313|calmodulin 1	AK162314|Calm1|12313|calmodulin 1	AK169027|Calm1|12313|calmodulin 1	AK167353|Calm1|12313|calmodulin 1	M19381|Calm1|12313|calmodulin 1	AK004673|Calm1|12313|calmodulin 1	AK151923|Calm1|12313|calmodulin 1	AK152148|Calm1|12313|calmodulin 1	AK152850|Calm1|12313|calmodulin 1	AK153348|Calm1|12313|calmodulin 1	AK153546|Calm1|12313|calmodulin 1	AK168002|Calm1|12313|calmodulin 1	AK168803|Calm1|12313|calmodulin 1	AK169055|Calm1|12313|calmodulin 1	AK169640|Calm1|12313|calmodulin 1	AK153426|Calm1|12313|calmodulin 1	AK013695|Calm1|12313|calmodulin 1	AK088141|Calm1|12313|calmodulin 1	AK150288|Calm1|12313|calmodulin 1	AK151001|Calm1|12313|calmodulin 1	AK151552|Calm1|12313|calmodulin 1	AK152897|Calm1|12313|calmodulin 1	AK152719|Calm1|12313|calmodulin 1	AK166308|Calm1|12313|calmodulin 1	AK168663|Calm1|12313|calmodulin 1	AK152715|Calm1|12313|calmodulin 1	AK153004|Calm1|12313|calmodulin 1	BC054805|Calm1|12313|calmodulin 1	NM_009790|Calm1|12313|calmodulin 1	AK161302|Calm1|12313|calmodulin 1	AK168241|Calm1|12313|calmodulin 1	X61432|Calm1|12313|calmodulin 1
mm9_v1_chr10_+_57351786_57351901	6.46403	NHLH1,2.p2	L02241|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039051|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_008863|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK005281|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK089677|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK083875|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156851|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK157521|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK171359|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	AK156950|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr13_-_12199109_12199211	6.32898	NHLH1,2.p2	BC043140|Ryr2|20191|ryanodine receptor 2, cardiac	BC059061|Ryr2|20191|ryanodine receptor 2, cardiac	NM_023868|Ryr2|20191|ryanodine receptor 2, cardiac
mm9_v1_chrX_-_119510890_119511030	6.29696	NHLH1,2.p2	BC027045|Nap1l3|54561|nucleosome assembly protein 1-like 3	AK078521|Nap1l3|54561|nucleosome assembly protein 1-like 3	BC020176|Nap1l3|54561|nucleosome assembly protein 1-like 3	NM_138742|Nap1l3|54561|nucleosome assembly protein 1-like 3	AB010711|Nap1l3|54561|nucleosome assembly protein 1-like 3
mm9_v1_chr1_+_75502181_75502246	6.2696	NHLH1,2.p2	AK080818|Obsl1|98733|obscurin-like 1
mm9_v1_chr10_+_99478457_99478639	6.1528	NHLH1,2.p2	AK018777|Kitl|17311|kit ligand	NM_013598|Kitl|17311|kit ligand	U44725|Kitl|17311|kit ligand	AK134301|Kitl|17311|kit ligand	AK041961|Kitl|17311|kit ligand	AK165233|Kitl|17311|kit ligand	BC011322|Kitl|17311|kit ligand	M57647|Kitl|17311|kit ligand	S40364|Kitl|17311|kit ligand	S40534|Kitl|17311|kit ligand	S40536|Kitl|17311|kit ligand	M64262|Kitl|17311|kit ligand	X95379|Kitl|17311|kit ligand	X95380|Kitl|17311|kit ligand	X95381|Kitl|17311|kit ligand	X99322|Kitl|17311|kit ligand	Y10287|Kitl|17311|kit ligand	M59915|Kitl|17311|kit ligand
mm9_v1_chr2_+_158492854_158492905	6.00557	NHLH1,2.p2	AK044453|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	NM_001159662|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC054764|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	BC057542|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AF423761|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B	AK042123|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr4_+_97444494_97444517	5.97458	NHLH1,2.p2	AK052204|Nfia|18027|nuclear factor I/A
mm9_v1_chr17_+_44215761_44215847	5.96857	NHLH1,2.p2	NM_032003|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	NM_001168620|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AK032341|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	AF233377|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC089320|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm9_v1_chr10_-_30522912_30522956	5.8949	NHLH1,2.p2	NM_172495|Ncoa7|211329|nuclear receptor coactivator 7
mm9_v1_chr2_-_170232008_170232013	5.84993	NHLH1,2.p2	AK008957|Bcas1|76960|breast carcinoma amplified sequence 1	AK031825|Bcas1|76960|breast carcinoma amplified sequence 1
mm9_v1_chr14_+_122874598_122874609	5.79672	NHLH1,2.p2	AK051032|Zic2|22772|zinc finger protein of the cerebellum 2	NM_009574|Zic2|22772|zinc finger protein of the cerebellum 2
mm9_v1_chr7_-_134968017_134968064	5.75376	NHLH1,2.p2	NM_024414|Stx1b|56216|syntaxin 1B
mm9_v1_chr1_+_179372452_179372537	5.72018	NHLH1,2.p2	BC050909|Zfp238|30928|zinc finger protein 238
mm9_v1_chr17_+_25854116_25854176	5.6123	NHLH1,2.p2	NM_022422|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	AK018778|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	AY029485|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13
mm9_v1_chr14_+_34736806_34736957	5.59774	NHLH1,2.p2	L42114|Gdf10|14560|growth differentiation factor 10	S82648|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr14_+_35124004_35124021	5.58882	NHLH1,2.p2	AK075971|Glud1|14661|glutamate dehydrogenase 1	X57024|Glud1|14661|glutamate dehydrogenase 1	AK089152|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr12_+_17697623_17697667	5.52907	NHLH1,2.p2	AF085192|Hpcal1|53602|hippocalcin-like 1	AK002849|Hpcal1|53602|hippocalcin-like 1	BC001997|Hpcal1|53602|hippocalcin-like 1
mm9_v1_chr4_+_128560786_128560863	5.44192	NHLH1,2.p2	AK137930|Trim62|67525|tripartite motif-containing 62	AK048725|Trim62|67525|tripartite motif-containing 62
mm9_v1_chr8_-_89996089_89996284	5.4319	NHLH1,2.p2	AK161846|Cbln1|12404|cerebellin 1 precursor protein	BC051956|Cbln1|12404|cerebellin 1 precursor protein	BC055730|Cbln1|12404|cerebellin 1 precursor protein	BC132120|Cbln1|12404|cerebellin 1 precursor protein	BC132122|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr4_+_53453302_53453555	5.35076	NHLH1,2.p2	AY249865|Slc44a1|100434|solute carrier family 44, member 1	BC113167|Slc44a1|100434|solute carrier family 44, member 1	BC113169|Slc44a1|100434|solute carrier family 44, member 1	AY249866|Slc44a1|100434|solute carrier family 44, member 1
mm9_v1_chr17_-_26338106_26338229	5.30261	NHLH1,2.p2	L42463|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	U73198|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	AK144321|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	BC158003|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr6_-_115201866_115201882	5.27845	NHLH1,2.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr7_-_31911884_31911980	5.24736	NHLH1,2.p2	BC009652|Scn1b|20266|sodium channel, voltage-gated, type I, beta	NM_011322|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr2_-_156817751_156817861	5.24143	NHLH1,2.p2	AK002272|Ndrg3|29812|N-myc downstream regulated gene 3	AB033922|Ndrg3|29812|N-myc downstream regulated gene 3	BC018504|Ndrg3|29812|N-myc downstream regulated gene 3	AK036277|Ndrg3|29812|N-myc downstream regulated gene 3	AK037487|Ndrg3|29812|N-myc downstream regulated gene 3	AK029378|Ndrg3|29812|N-myc downstream regulated gene 3	AK004689|Ndrg3|29812|N-myc downstream regulated gene 3	AK154927|Ndrg3|29812|N-myc downstream regulated gene 3	NM_013865|Ndrg3|29812|N-myc downstream regulated gene 3	NM_180956|Ndrg3|29812|N-myc downstream regulated gene 3
mm9_v1_chr14_-_55531726_55531986	5.23297	NHLH1,2.p2	BC062878|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AB012808|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK007059|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	BC005727|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	AK163116|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17	NM_021551|Slc22a17|59049|solute carrier family 22 (organic cation transporter), member 17
mm9_v1_chr2_+_118605431_118605659	5.23107	NHLH1,2.p2	AK045560|Disp2|214240|dispatched homolog 2 (Drosophila)	NM_170593|Disp2|214240|dispatched homolog 2 (Drosophila)	AK036480|Disp2|214240|dispatched homolog 2 (Drosophila)	AK038938|Disp2|214240|dispatched homolog 2 (Drosophila)	AK035975|Disp2|214240|dispatched homolog 2 (Drosophila)	AY150699|Disp2|214240|dispatched homolog 2 (Drosophila)	BC118526|Disp2|214240|dispatched homolog 2 (Drosophila)
mm9_v1_chr16_+_91270009_91270054	5.21194	NHLH1,2.p2	NM_016968|Olig1|50914|oligodendrocyte transcription factor 1	AK144435|Olig1|50914|oligodendrocyte transcription factor 1	AB038696|Olig1|50914|oligodendrocyte transcription factor 1	BC046316|Olig1|50914|oligodendrocyte transcription factor 1
mm9_v1_chr4_+_130348406_130348575	5.16245	NHLH1,2.p2	AK129153|Sdc3|20970|syndecan 3	NM_011520|Sdc3|20970|syndecan 3	AK155127|Sdc3|20970|syndecan 3	BC054795|Sdc3|20970|syndecan 3	BC062093|Sdc3|20970|syndecan 3	U52826|Sdc3|20970|syndecan 3
mm9_v1_chr10_+_78243274_78243338	5.14864	NHLH1,2.p2	BC138120|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	BC138140|Slc1a6|20513|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
mm9_v1_chr3_-_125641429_125641514	5.13172	NHLH1,2.p2	AK163650|Ugt8a|22239|UDP galactosyltransferase 8A	AK128994|Ugt8a|22239|UDP galactosyltransferase 8A	AK137364|Ugt8a|22239|UDP galactosyltransferase 8A	AK144005|Ugt8a|22239|UDP galactosyltransferase 8A	NM_011674|Ugt8a|22239|UDP galactosyltransferase 8A	AK078371|Ugt8a|22239|UDP galactosyltransferase 8A
mm9_v1_chr1_-_137584672_137584743	5.10383	NHLH1,2.p2	AK158038|Nav1|215690|neuron navigator 1
mm9_v1_chr7_+_52419317_52419319	5.03297	NHLH1,2.p2	AK159064|Slc17a7|72961|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm9_v1_chr10_-_80488111_80488155	5.01884	NHLH1,2.p2	AK081336|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	BC057556|Diras1|208666|DIRAS family, GTP-binding RAS-like 1	NM_145217|Diras1|208666|DIRAS family, GTP-binding RAS-like 1
mm9_v1_chr7_+_134094045_134094242	5.01168	NHLH1,2.p2	AK034088|Sez6l2|233878|seizure related 6 homolog like 2	AK165738|Sez6l2|233878|seizure related 6 homolog like 2	BC096615|Sez6l2|233878|seizure related 6 homolog like 2	BC011475|Sez6l2|233878|seizure related 6 homolog like 2	NM_144926|Sez6l2|233878|seizure related 6 homolog like 2
mm9_v1_chr7_-_13623543_13623681	5.0113	NHLH1,2.p2	NM_001168469|Ube2m|22192|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)
mm9_v1_chr11_+_16652205_16652516	4.98314	NHLH1,2.p2	AK004883|Egfr|13649|epidermal growth factor receptor	NM_007912|Egfr|13649|epidermal growth factor receptor	NM_207655|Egfr|13649|epidermal growth factor receptor	AK004944|Egfr|13649|epidermal growth factor receptor	AK004911|Egfr|13649|epidermal growth factor receptor	AK134262|Egfr|13649|epidermal growth factor receptor	AK014017|Egfr|13649|epidermal growth factor receptor	BC023729|Egfr|13649|epidermal growth factor receptor	AF124513|Egfr|13649|epidermal growth factor receptor	AF275367|Egfr|13649|epidermal growth factor receptor	X59698|Egfr|13649|epidermal growth factor receptor	AK049452|Egfr|13649|epidermal growth factor receptor	X78987|Egfr|13649|epidermal growth factor receptor	U03425|Egfr|13649|epidermal growth factor receptor	L06864|Egfr|13649|epidermal growth factor receptor
mm9_v1_chr4_+_155068450_155068511	4.94529	NHLH1,2.p2	AK046537|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr19_+_46836085_46836138	4.85436	NHLH1,2.p2	AK053711|Cnnm2|94219|cyclin M2	AK159616|Cnnm2|94219|cyclin M2	AK044400|Cnnm2|94219|cyclin M2	NM_001102471|Cnnm2|94219|cyclin M2	NM_033569|Cnnm2|94219|cyclin M2	BC012956|Cnnm2|94219|cyclin M2	AK032006|Cnnm2|94219|cyclin M2
mm9_v1_chr19_+_47253484_47253552	4.853	NHLH1,2.p2	BC058386|Neurl1a|18011|neuralized homolog 1A (Drosophila)	AK046382|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr8_-_73011217_73011286	4.80152	NHLH1,2.p2	AK005155|Tmem59l|67937|transmembrane protein 59-like	BC056172|Tmem59l|67937|transmembrane protein 59-like	NM_182991|Tmem59l|67937|transmembrane protein 59-like
mm9_v1_chrX_-_20498021_20498157	4.74385	NHLH1,2.p2	BC022954|Syn1|20964|synapsin I	NM_001110780|Syn1|20964|synapsin I	NM_013680|Syn1|20964|synapsin I
mm9_v1_chr10_-_108447894_108447956	4.72167	NHLH1,2.p2	D37792|Syt1|20979|synaptotagmin I	AK164153|Syt1|20979|synaptotagmin I	AK018163|Syt1|20979|synaptotagmin I
mm9_v1_chr15_+_81641869_81641976	4.69925	NHLH1,2.p2	AK145125|Tef|21685|thyrotroph embryonic factor	AK154472|Tef|21685|thyrotroph embryonic factor	BC036982|Tef|21685|thyrotroph embryonic factor	AF194420|Tef|21685|thyrotroph embryonic factor	AK147965|Tef|21685|thyrotroph embryonic factor
mm9_v1_chr9_-_53822931_53822996	4.68576	NHLH1,2.p2	BC049160|Elmod1|270162|ELMO domain containing 1	AK029207|Elmod1|270162|ELMO domain containing 1
mm9_v1_chr10_-_108447996_108448001	4.68532	NHLH1,2.p2	AK013798|Syt1|20979|synaptotagmin I	AK078790|Syt1|20979|synaptotagmin I
mm9_v1_chr17_+_55585011_55585017	4.63583	NHLH1,2.p2	AK082566|St6gal2|240119|beta galactoside alpha 2,6 sialyltransferase 2	NM_172829|St6gal2|240119|beta galactoside alpha 2,6 sialyltransferase 2
mm9_v1_chr5_-_46030523_46030852	4.62532	NHLH1,2.p2	AK081567|Fam184b|58227|family with sequence similarity 184, member B	BC056379|Fam184b|58227|family with sequence similarity 184, member B	NM_021416|Fam184b|58227|family with sequence similarity 184, member B	AB257856|Fam184b|58227|family with sequence similarity 184, member B
mm9_v1_chr9_-_75459125_75459169	4.60057	NHLH1,2.p2	AK147581|Tmod2|50876|tropomodulin 2	NM_016711|Tmod2|50876|tropomodulin 2
mm9_v1_chr9_-_54349409_54349432	4.60004	NHLH1,2.p2	AK170274|Dmxl2|235380|Dmx-like 2	AK048831|Dmxl2|235380|Dmx-like 2	AK053672|Dmxl2|235380|Dmx-like 2	NM_172771|Dmxl2|235380|Dmx-like 2
mm9_v1_chr14_-_70689267_70689330	4.57726	NHLH1,2.p2	AK133393|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform
mm9_v1_chr14_-_26588341_26588548	4.5221	NHLH1,2.p2	NM_001101433|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147263|Zcchc24|71918|zinc finger, CCHC domain containing 24	BC147264|Zcchc24|71918|zinc finger, CCHC domain containing 24
mm9_v1_chr15_+_78744328_78744471	4.35344	NHLH1,2.p2	BC049107|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	NM_020271|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AY366300|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AK043228|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	BC046955|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase	AB041662|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr10_+_128346900_128347000	4.33061	NHLH1,2.p2	NM_007653|Cd63|12512|CD63 antigen	AK150647|Cd63|12512|CD63 antigen	AK170344|Cd63|12512|CD63 antigen	AK146618|Cd63|12512|CD63 antigen	AK151702|Cd63|12512|CD63 antigen	AK152372|Cd63|12512|CD63 antigen	AK159875|Cd63|12512|CD63 antigen	AK163785|Cd63|12512|CD63 antigen	AK166543|Cd63|12512|CD63 antigen	AK152072|Cd63|12512|CD63 antigen	AK166766|Cd63|12512|CD63 antigen	BC008108|Cd63|12512|CD63 antigen	BC012212|Cd63|12512|CD63 antigen	D16432|Cd63|12512|CD63 antigen	AK028220|Cd63|12512|CD63 antigen	AK151963|Cd63|12512|CD63 antigen	AF159427|Cd63|12512|CD63 antigen
mm9_v1_chr4_-_57003214_57003289	4.29039	NHLH1,2.p2	NM_001142965|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene	BC132345|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene
mm9_v1_chr3_+_145421621_145421769	4.23426	NHLH1,2.p2	AK143507|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK148907|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	NM_026993|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	AK010430|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1	BC034505|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr8_+_10153910_10154187	4.22289	NHLH1,2.p2	BC072580|Myo16|244281|myosin XVI	NM_001081397|Myo16|244281|myosin XVI	BC151049|Myo16|244281|myosin XVI	BC151051|Myo16|244281|myosin XVI	BC157966|Myo16|244281|myosin XVI	BC172122|Myo16|244281|myosin XVI	BC082311|Myo16|244281|myosin XVI	AK082350|Myo16|244281|myosin XVI
mm9_v1_chr10_-_79076744_79076769	4.21737	NHLH1,2.p2	BC089008|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_198614|C2cd4c|237397|C2 calcium-dependent domain containing 4C	AK029946|C2cd4c|237397|C2 calcium-dependent domain containing 4C	NM_001168624|C2cd4c|237397|C2 calcium-dependent domain containing 4C
mm9_v1_chr6_-_115201846_115201865	4.19671	NHLH1,2.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr14_+_34736772_34736788	4.17173	NHLH1,2.p2	BC058358|Gdf10|14560|growth differentiation factor 10	NM_145741|Gdf10|14560|growth differentiation factor 10	AK042684|Gdf10|14560|growth differentiation factor 10
mm9_v1_chr14_+_77556569_77556616	4.1631	NHLH1,2.p2	AK082388|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	AK078337|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1	AK162001|Enox1|239188|ecto-NOX disulfide-thiol exchanger 1
mm9_v1_chr11_-_4847968_4848115	4.12913	NHLH1,2.p2	AK122388|Nefh|380684|neurofilament, heavy polypeptide	NM_010904|Nefh|380684|neurofilament, heavy polypeptide	M35131|Nefh|380684|neurofilament, heavy polypeptide
mm9_v1_chr5_+_118292144_118292194	4.11171	NHLH1,2.p2	BC066101|Nos1|18125|nitric oxide synthase 1, neuronal	BC083183|Nos1|18125|nitric oxide synthase 1, neuronal
mm9_v1_chr11_-_6375845_6375919	4.1024	NHLH1,2.p2	AF017630|Purb|19291|purine rich element binding protein B	NM_011221|Purb|19291|purine rich element binding protein B
mm9_v1_chr10_-_60294129_60294365	4.10228	NHLH1,2.p2	BC048162|Unc5b|107449|unc-5 homolog B (C. elegans)	BC057560|Unc5b|107449|unc-5 homolog B (C. elegans)	AJ487853|Unc5b|107449|unc-5 homolog B (C. elegans)	AK170513|Unc5b|107449|unc-5 homolog B (C. elegans)	AK154287|Unc5b|107449|unc-5 homolog B (C. elegans)	AK158284|Unc5b|107449|unc-5 homolog B (C. elegans)	AK018177|Unc5b|107449|unc-5 homolog B (C. elegans)	AK154271|Unc5b|107449|unc-5 homolog B (C. elegans)	NM_029770|Unc5b|107449|unc-5 homolog B (C. elegans)
mm9_v1_chr4_-_128798481_128798555	4.05063	NHLH1,2.p2	BC049607|Hpca|15444|hippocalcin	NM_010471|Hpca|15444|hippocalcin	AK002992|Hpca|15444|hippocalcin
mm9_v1_chr11_+_50038815_50038936	4.04729	NHLH1,2.p2	AK155336|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B	NM_145926|Mgat4b|103534|mannoside acetylglucosaminyltransferase 4, isoenzyme B
mm9_v1_chr17_+_46390828_46391138	4.02909	NHLH1,2.p2	AK134769|Gm88|224813|predicted gene 88	NM_001111142|Gm88|224813|predicted gene 88	BC147714|Gm88|224813|predicted gene 88	BC172136|Gm88|224813|predicted gene 88
mm9_v1_chr11_+_53333270_53333474	3.97256	NHLH1,2.p2	BC059248|Sept8|20362|septin 8	NM_033144|Sept8|20362|septin 8	AB093215|Sept8|20362|septin 8	AK144178|Sept8|20362|septin 8	BC049819|Sept8|20362|septin 8	BC037707|Sept8|20362|septin 8
mm9_v1_chr2_+_55289530_55289587	3.97047	NHLH1,2.p2	AK046778|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	D45022|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	NM_008426|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103671|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103673|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103674|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3	BC103672|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3
mm9_v1_chr10_+_93977597_93977699	3.96143	NHLH1,2.p2	NM_172051|Tmcc3|319880|transmembrane and coiled coil domains 3	AK132545|Tmcc3|319880|transmembrane and coiled coil domains 3	BC095951|Tmcc3|319880|transmembrane and coiled coil domains 3	AK083129|Tmcc3|319880|transmembrane and coiled coil domains 3
mm9_v1_chr13_+_55050729_55050861	3.94505	NHLH1,2.p2	BC058084|Unc5a|107448|unc-5 homolog A (C. elegans)	AJ487852|Unc5a|107448|unc-5 homolog A (C. elegans)	NM_153131|Unc5a|107448|unc-5 homolog A (C. elegans)
mm9_v1_chr3_+_136333083_136333098	3.92183	NHLH1,2.p2	AK146387|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr2_-_148701164_148701201	3.92048	NHLH1,2.p2	AK161856|Cst3|13010|cystatin C	AK151160|Cst3|13010|cystatin C	AK013676|Cst3|13010|cystatin C	AK153533|Cst3|13010|cystatin C	AK166430|Cst3|13010|cystatin C
mm9_v1_chr3_+_14886253_14886451	3.90625	NHLH1,2.p2	NM_009801|Car2|12349|carbonic anhydrase 2	U37705|Car2|12349|carbonic anhydrase 2
mm9_v1_chr1_-_84692352_84692593	3.89298	NHLH1,2.p2	AB067650|Dner|227325|delta/notch-like EGF-related receptor	AF370126|Dner|227325|delta/notch-like EGF-related receptor	AY032924|Dner|227325|delta/notch-like EGF-related receptor	AK044597|Dner|227325|delta/notch-like EGF-related receptor	AK030642|Dner|227325|delta/notch-like EGF-related receptor
mm9_v1_chr7_+_138079669_138079779	3.88692	NHLH1,2.p2	NM_019564|Htra1|56213|HtrA serine peptidase 1	AK128916|Htra1|56213|HtrA serine peptidase 1	AK132270|Htra1|56213|HtrA serine peptidase 1	AF179369|Htra1|56213|HtrA serine peptidase 1	AF172994|Htra1|56213|HtrA serine peptidase 1	BC013516|Htra1|56213|HtrA serine peptidase 1
mm9_v1_chr4_+_155068604_155068624	3.84714	NHLH1,2.p2	AK048841|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene	BC147231|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene	BC147232|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr7_+_17529961_17530046	3.8253	NHLH1,2.p2	AK140282|Pnmal2|434128|PNMA-like 2	NM_001099636|Pnmal2|434128|PNMA-like 2
mm9_v1_chr8_-_125201971_125202083	3.79518	NHLH1,2.p2	AK033680|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	AK041887|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_001109873|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	NM_177289|Cbfa2t3|12398|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm9_v1_chr12_-_73171976_73172111	3.79364	NHLH1,2.p2	BC114990|Gpr135|238252|G protein-coupled receptor 135	BC115824|Gpr135|238252|G protein-coupled receptor 135	AY288425|Gpr135|238252|G protein-coupled receptor 135	BC148305|Gpr135|238252|G protein-coupled receptor 135	NM_181752|Gpr135|238252|G protein-coupled receptor 135	BC062104|Gpr135|238252|G protein-coupled receptor 135	BC139332|Gpr135|238252|G protein-coupled receptor 135	BC139335|Gpr135|238252|G protein-coupled receptor 135	AK141053|Gpr135|238252|G protein-coupled receptor 135	AK132237|Gpr135|238252|G protein-coupled receptor 135
mm9_v1_chr8_-_87461251_87461273	3.78104	NHLH1,2.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr4_+_129662110_129662138	3.77684	NHLH1,2.p2	AK147485|Bai2|230775|brain-specific angiogenesis inhibitor 2
mm9_v1_chr17_+_88840048_88840164	3.77585	NHLH1,2.p2	NM_180974|Foxn2|14236|forkhead box N2	AK154401|Foxn2|14236|forkhead box N2	AK030735|Foxn2|14236|forkhead box N2	AK031639|Foxn2|14236|forkhead box N2	BC138824|Foxn2|14236|forkhead box N2	BC138825|Foxn2|14236|forkhead box N2
mm9_v1_chr11_-_30168153_30168187	3.75964	NHLH1,2.p2	AK137356|Spnb2|20742|spectrin beta 2
mm9_v1_chr2_+_25284190_25284289	3.75566	NHLH1,2.p2	AK169438|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	NM_007379|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2	X75927|Abca2|11305|ATP-binding cassette, sub-family A (ABC1), member 2
mm9_v1_chr8_+_121918768_121918845	3.74463	NHLH1,2.p2	BC004764|Mlycd|56690|malonyl-CoA decarboxylase	NM_019966|Mlycd|56690|malonyl-CoA decarboxylase	AK171095|Mlycd|56690|malonyl-CoA decarboxylase	AK082479|Mlycd|56690|malonyl-CoA decarboxylase	AK051564|Mlycd|56690|malonyl-CoA decarboxylase
mm9_v1_chr11_-_120645428_120645541	3.74405	NHLH1,2.p2	AF015770|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	AK004573|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	U94350|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	BC066023|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	NM_009053|Rfng|19719|RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm9_v1_chr18_+_82723907_82723917	3.73813	NHLH1,2.p2	AK147966|Mbp|17196|myelin basic protein
mm9_v1_chr3_+_101180976_101181070	3.67907	NHLH1,2.p2	AK083000|Igsf3|78908|immunoglobulin superfamily, member 3	AK084011|Igsf3|78908|immunoglobulin superfamily, member 3	AK129151|Igsf3|78908|immunoglobulin superfamily, member 3	NM_207205|Igsf3|78908|immunoglobulin superfamily, member 3
mm9_v1_chr10_-_108448003_108448027	3.66301	NHLH1,2.p2	BC048187|Syt1|20979|synaptotagmin I	AK019304|Syt1|20979|synaptotagmin I	AK048973|Syt1|20979|synaptotagmin I	AK133578|Syt1|20979|synaptotagmin I
mm9_v1_chr8_+_24521967_24522003	3.65572	NHLH1,2.p2	AK088868|Sfrp1|20377|secreted frizzled-related protein 1	NM_013834|Sfrp1|20377|secreted frizzled-related protein 1	BC094662|Sfrp1|20377|secreted frizzled-related protein 1	U88566|Sfrp1|20377|secreted frizzled-related protein 1	BC024495|Sfrp1|20377|secreted frizzled-related protein 1
mm9_v1_chr6_-_37249957_37249977	3.61234	NHLH1,2.p2	AK081360|Dgki|320127|diacylglycerol kinase, iota	NM_001081206|Dgki|320127|diacylglycerol kinase, iota
mm9_v1_chr18_+_33098914_33099011	3.5999	NHLH1,2.p2	AK043114|Camk4|12326|calcium/calmodulin-dependent protein kinase IV	X58995|Camk4|12326|calcium/calmodulin-dependent protein kinase IV
mm9_v1_chr11_+_101017197_101017233	3.58219	NHLH1,2.p2	NM_134028|Tubg2|103768|tubulin, gamma 2	BC019652|Tubg2|103768|tubulin, gamma 2	BC078446|Tubg2|103768|tubulin, gamma 2
mm9_v1_chr14_-_56519012_56519108	3.56822	NHLH1,2.p2	AK009339|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	BC087941|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	AK049709|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1	NM_001082975|Sdr39u1|654795|short chain dehydrogenase/reductase family 39U, member 1
mm9_v1_chr4_+_57447340_57447346	3.56715	NHLH1,2.p2	AK133666|Palm2|242481|paralemmin 2
mm9_v1_chr11_+_6963421_6963491	3.49842	NHLH1,2.p2	NM_009622|Adcy1|432530|adenylate cyclase 1
mm9_v1_chr10_+_42221973_42222268	3.48772	NHLH1,2.p2	BC116885|Snx3|54198|sorting nexin 3	BC116889|Snx3|54198|sorting nexin 3	AK145350|Snx3|54198|sorting nexin 3	AK154728|Snx3|54198|sorting nexin 3	AF062482|Snx3|54198|sorting nexin 3	AK007798|Snx3|54198|sorting nexin 3	AK013261|Snx3|54198|sorting nexin 3	AK018790|Snx3|54198|sorting nexin 3	AK189751|Snx3|54198|sorting nexin 3
mm9_v1_chr7_+_64845887_64845914	3.46518	NHLH1,2.p2	AK083107|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_001038701|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr16_-_85173978_85173998	3.45931	NHLH1,2.p2	AK147543|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr14_-_70689083_70689258	3.44754	NHLH1,2.p2	BC046617|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	BC141079|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	BC145347|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	M81475|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	NM_008915|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform	AK015002|Ppp3cc|19057|protein phosphatase 3, catalytic subunit, gamma isoform
mm9_v1_chr18_+_45719464_45719553	3.44515	NHLH1,2.p2	AK087908|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK050390|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr17_-_27650285_27650347	3.44367	NHLH1,2.p2	BC072635|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr6_+_114081227_114081234	3.41045	NHLH1,2.p2	AK140423|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK053078|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	NM_172890|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr19_-_47089605_47089678	3.4072	NHLH1,2.p2	AK162385|Nt5c2|76952|5'-nucleotidase, cytosolic II	NM_001164363|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr16_-_20621287_20621552	3.40631	NHLH1,2.p2	AK013788|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147550|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147736|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC147745|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	BC157896|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2	NM_028420|Camk2n2|73047|calcium/calmodulin-dependent protein kinase II inhibitor 2
mm9_v1_chrX_+_20425667_20425723	3.3684	NHLH1,2.p2	NM_001159645|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	NM_009703|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK169757|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK133797|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK163567|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK039044|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK085823|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	AK135358|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog	BC004757|Araf|11836|v-raf murine sarcoma 3611 viral oncogene homolog
mm9_v1_chr17_+_43153516_43153557	3.36607	NHLH1,2.p2	AK143175|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK033529|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	AK134704|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	BC016420|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr11_+_103994160_103994195	3.35793	NHLH1,2.p2	AK158806|Crhr1|12921|corticotropin releasing hormone receptor 1	NM_007762|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr17_-_45823145_45823192	3.32262	NHLH1,2.p2	NM_198167|Tmem63b|224807|transmembrane protein 63b	AK159673|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr3_-_107698658_107698731	3.31625	NHLH1,2.p2	AK147824|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene	AK030251|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene	AK043835|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene	AK036227|4933431E20Rik|329735|RIKEN cDNA 4933431E20 gene
mm9_v1_chr7_+_52419289_52419313	3.31296	NHLH1,2.p2	NM_182993|Slc17a7|72961|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm9_v1_chr9_-_70504934_70505009	3.29722	NHLH1,2.p2	BC058683|Fam63b|235461|family with sequence similarity 63, member B	AK046623|Fam63b|235461|family with sequence similarity 63, member B	BC049357|Fam63b|235461|family with sequence similarity 63, member B	AK046403|Fam63b|235461|family with sequence similarity 63, member B	AK035930|Fam63b|235461|family with sequence similarity 63, member B	NM_172772|Fam63b|235461|family with sequence similarity 63, member B	AK220158|Fam63b|235461|family with sequence similarity 63, member B
mm9_v1_chr17_+_44215851_44215893	3.27043	NHLH1,2.p2	AK220510|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC138977|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC138978|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5	BC145484|Enpp5|83965|ectonucleotide pyrophosphatase/phosphodiesterase 5
mm9_v1_chr12_+_17697684_17697832	3.26481	NHLH1,2.p2	
mm9_v1_chr1_-_166388431_166388540	3.25499	NHLH1,2.p2	AK010677|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide	NM_009721|Atp1b1|11931|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm9_v1_chr3_-_36589048_36589088	3.2522	NHLH1,2.p2	AK082063|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK080619|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	AK032317|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3	NM_019510|Trpc3|22065|transient receptor potential cation channel, subfamily C, member 3
mm9_v1_chr4_+_155068566_155068580	3.2515	NHLH1,2.p2	AK047240|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene	NM_178699|B930041F14Rik|230991|RIKEN cDNA B930041F14 gene
mm9_v1_chr11_-_3813644_3813898	3.25034	NHLH1,2.p2	BC020181|Slc35e4|103710|solute carrier family 35, member E4	BC095957|Slc35e4|103710|solute carrier family 35, member E4
mm9_v1_chr10_-_120913138_120913382	3.23653	NHLH1,2.p2	AK167627|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AF332864|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC011511|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	NM_138956|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC071204|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	AK155495|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3	BC055023|Rassf3|192678|Ras association (RalGDS/AF-6) domain family member 3
mm9_v1_chr2_+_144993587_144993848	3.21957	NHLH1,2.p2	AF314821|Slc24a3|94249|solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
mm9_v1_chr5_+_36100547_36100586	3.21119	NHLH1,2.p2	AJ748602|Ablim2|231148|actin-binding LIM protein 2	AJ748603|Ablim2|231148|actin-binding LIM protein 2	AK046243|Ablim2|231148|actin-binding LIM protein 2	AK046879|Ablim2|231148|actin-binding LIM protein 2	AK082707|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr9_-_75459046_75459076	3.19671	NHLH1,2.p2	AF177170|Tmod2|50876|tropomodulin 2
mm9_v1_chr2_+_164311755_164311970	3.19102	NHLH1,2.p2	BC030298|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_026797|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr15_+_78744862_78744934	3.18559	NHLH1,2.p2	BC037010|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr8_+_89996675_89996716	3.1747	NHLH1,2.p2	AK135135|Gm2694|100040294|predicted gene 2694	AK137304|Gm2694|100040294|predicted gene 2694
mm9_v1_chr18_+_35000283_35000409	3.16041	NHLH1,2.p2	BC020184|Reep2|225362|receptor accessory protein 2	NM_144865|Reep2|225362|receptor accessory protein 2	AK147333|Reep2|225362|receptor accessory protein 2	AY562230|Reep2|225362|receptor accessory protein 2	EU555417|Reep2|225362|receptor accessory protein 2
mm9_v1_chr19_+_5637459_5637550	3.13505	NHLH1,2.p2	AK155321|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK158072|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	BC094053|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	NM_009045|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr11_-_79317471_79317554	3.13375	NHLH1,2.p2	BC024757|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr10_+_11063201_11063297	3.12913	NHLH1,2.p2	AF124044|Epm2a|13853|epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	AK155519|Epm2a|13853|epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	NM_010146|Epm2a|13853|epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	AK041609|Epm2a|13853|epilepsy, progressive myoclonic epilepsy, type 2 gene alpha
mm9_v1_chr10_-_108447674_108447736	3.1165	NHLH1,2.p2	BC042519|Syt1|20979|synaptotagmin I	NM_009306|Syt1|20979|synaptotagmin I
mm9_v1_chr5_-_125342745_125342763	3.07175	NHLH1,2.p2	AK136203|Ccdc92|215707|coiled-coil domain containing 92
mm9_v1_chr14_-_13655592_13655605	3.01165	NHLH1,2.p2	AK122453|Cadps|27062|Ca2+-dependent secretion activator	NM_001042617|Cadps|27062|Ca2+-dependent secretion activator	NM_012061|Cadps|27062|Ca2+-dependent secretion activator
mm9_v1_chr10_+_3134318_3134341	3.00855	NHLH1,2.p2	AY151137|Cnksr3|215748|Cnksr family member 3
mm9_v1_chr9_+_118387306_118387461	2.98836	NHLH1,2.p2	NM_001164789|Eomes|13813|eomesodermin homolog (Xenopus laevis)	NM_010136|Eomes|13813|eomesodermin homolog (Xenopus laevis)	AB031037|Eomes|13813|eomesodermin homolog (Xenopus laevis)	BC094319|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr13_+_109906361_109906552	2.93813	NHLH1,2.p2	AK035860|Pde4d|238871|phosphodiesterase 4D, cAMP specific	AK081013|Pde4d|238871|phosphodiesterase 4D, cAMP specific
mm9_v1_chr11_+_77744280_77744540	2.93162	NHLH1,2.p2	AK165757|Sez6|20370|seizure related gene 6	BC055345|Sez6|20370|seizure related gene 6	AK220513|Sez6|20370|seizure related gene 6	AB206791|Sez6|20370|seizure related gene 6	AK032277|Sez6|20370|seizure related gene 6	AK147705|Sez6|20370|seizure related gene 6	BC053011|Sez6|20370|seizure related gene 6	NM_021286|Sez6|20370|seizure related gene 6	D29763|Sez6|20370|seizure related gene 6	D64009|Sez6|20370|seizure related gene 6	D64010|Sez6|20370|seizure related gene 6
mm9_v1_chr15_+_79921725_79921855	2.92154	NHLH1,2.p2	BC138728|Syngr1|20972|synaptogyrin 1	BC138729|Syngr1|20972|synaptogyrin 1	NM_009303|Syngr1|20972|synaptogyrin 1	NM_207708|Syngr1|20972|synaptogyrin 1	AK044007|Syngr1|20972|synaptogyrin 1	AJ002306|Syngr1|20972|synaptogyrin 1	AK156134|Syngr1|20972|synaptogyrin 1	AK002972|Syngr1|20972|synaptogyrin 1	AK010442|Syngr1|20972|synaptogyrin 1	AK153096|Syngr1|20972|synaptogyrin 1	AK153187|Syngr1|20972|synaptogyrin 1	BC048172|Syngr1|20972|synaptogyrin 1	AK194549|Syngr1|20972|synaptogyrin 1
mm9_v1_chr8_+_47556353_47556483	2.84952	NHLH1,2.p2	NM_007981|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK153050|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK145900|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK158388|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr3_+_138405156_138405310	2.84738	NHLH1,2.p2	NM_019571|Tspan5|56224|tetraspanin 5	AF121344|Tspan5|56224|tetraspanin 5	AK013350|Tspan5|56224|tetraspanin 5	BC058695|Tspan5|56224|tetraspanin 5	BC046784|Tspan5|56224|tetraspanin 5
mm9_v1_chr6_-_136824323_136824329	2.84363	NHLH1,2.p2	AK018719|Mgp|17313|matrix Gla protein	AK159591|Mgp|17313|matrix Gla protein	AK159931|Mgp|17313|matrix Gla protein	NM_008597|Mgp|17313|matrix Gla protein
mm9_v1_chr4_-_109149274_109149287	2.84016	NHLH1,2.p2	BC028255|Rnf11|29864|ring finger protein 11
mm9_v1_chr11_-_119908236_119908480	2.83946	NHLH1,2.p2	AY236858|Aatk|11302|apoptosis-associated tyrosine kinase	AY236859|Aatk|11302|apoptosis-associated tyrosine kinase	AB288871|Aatk|11302|apoptosis-associated tyrosine kinase	AB093253|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198785|Aatk|11302|apoptosis-associated tyrosine kinase	NM_007377|Aatk|11302|apoptosis-associated tyrosine kinase	BC042837|Aatk|11302|apoptosis-associated tyrosine kinase	BC052323|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chrX_+_7215705_7215836	2.82862	NHLH1,2.p2	NM_009305|Syp|20977|synaptophysin	AK034291|Syp|20977|synaptophysin	AK043756|Syp|20977|synaptophysin	AK090259|Syp|20977|synaptophysin	BC052354|Syp|20977|synaptophysin	BC014823|Syp|20977|synaptophysin	X95818|Syp|20977|synaptophysin
mm9_v1_chr9_-_75458954_75458978	2.8225	NHLH1,2.p2	AK079077|Tmod2|50876|tropomodulin 2	AK164178|Tmod2|50876|tropomodulin 2
mm9_v1_chr11_-_75609557_75609567	2.80628	NHLH1,2.p2	BC067030|Doc2b|13447|double C2, beta	NM_007873|Doc2b|13447|double C2, beta
mm9_v1_chr8_-_87461220_87461246	2.80599	NHLH1,2.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr13_-_6647924_6648034	2.80069	NHLH1,2.p2	CT010268|Pfkp|56421|phosphofructokinase, platelet	AY779275|Pfkp|56421|phosphofructokinase, platelet	AY779276|Pfkp|56421|phosphofructokinase, platelet	BC006926|Pfkp|56421|phosphofructokinase, platelet	AK165422|Pfkp|56421|phosphofructokinase, platelet	AK165425|Pfkp|56421|phosphofructokinase, platelet	Y19008|Pfkp|56421|phosphofructokinase, platelet	AK049841|Pfkp|56421|phosphofructokinase, platelet	AK170624|Pfkp|56421|phosphofructokinase, platelet	NM_019703|Pfkp|56421|phosphofructokinase, platelet	AK004790|Pfkp|56421|phosphofructokinase, platelet	AK020367|Pfkp|56421|phosphofructokinase, platelet	AK054193|Pfkp|56421|phosphofructokinase, platelet	AK076803|Pfkp|56421|phosphofructokinase, platelet	AK078254|Pfkp|56421|phosphofructokinase, platelet	AK098162|Pfkp|56421|phosphofructokinase, platelet	AK152670|Pfkp|56421|phosphofructokinase, platelet	AK154125|Pfkp|56421|phosphofructokinase, platelet	AK171062|Pfkp|56421|phosphofructokinase, platelet	AF123533|Pfkp|56421|phosphofructokinase, platelet
mm9_v1_chr17_-_25707599_25707638	2.79847	NHLH1,2.p2	BC043704|Sox8|20681|SRY-box containing gene 8	BC085619|Sox8|20681|SRY-box containing gene 8	AK032459|Sox8|20681|SRY-box containing gene 8	AK033460|Sox8|20681|SRY-box containing gene 8	AK034231|Sox8|20681|SRY-box containing gene 8	AK046473|Sox8|20681|SRY-box containing gene 8	AK053716|Sox8|20681|SRY-box containing gene 8	AK145294|Sox8|20681|SRY-box containing gene 8	NM_011447|Sox8|20681|SRY-box containing gene 8
mm9_v1_chr16_-_85173944_85173969	2.79637	NHLH1,2.p2	AK159245|App|11820|amyloid beta (A4) precursor protein	BC070409|App|11820|amyloid beta (A4) precursor protein	AK133639|App|11820|amyloid beta (A4) precursor protein	AK159352|App|11820|amyloid beta (A4) precursor protein	AK030583|App|11820|amyloid beta (A4) precursor protein	AK128971|App|11820|amyloid beta (A4) precursor protein	NM_001198823|App|11820|amyloid beta (A4) precursor protein	NM_001198824|App|11820|amyloid beta (A4) precursor protein	NM_001198825|App|11820|amyloid beta (A4) precursor protein	NM_001198826|App|11820|amyloid beta (A4) precursor protein	NM_007471|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr5_+_150214363_150214682	2.79578	NHLH1,2.p2	AK086092|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK160904|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK161526|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK036605|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK162725|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	NM_027519|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	BC116246|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	BC116247|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK018128|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	BC026658|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK042557|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK138268|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene	AK163617|6330406I15Rik|70717|RIKEN cDNA 6330406I15 gene
mm9_v1_chr12_-_11443284_11443537	2.79357	NHLH1,2.p2	BC046226|Vsnl1|26950|visinin-like 1	AK144454|Vsnl1|26950|visinin-like 1	AK160224|Vsnl1|26950|visinin-like 1	AJ489331|Vsnl1|26950|visinin-like 1	NM_012038|Vsnl1|26950|visinin-like 1
mm9_v1_chr12_-_87165448_87165516	2.7925	NHLH1,2.p2	AK152230|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	BC004591|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AF270646|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	NM_021446|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene	AK004480|0610007P14Rik|58520|RIKEN cDNA 0610007P14 gene
mm9_v1_chr2_-_130468507_130468540	2.78037	NHLH1,2.p2	AK161711|Prosapip1|241638|ProSAPiP1 protein	AK148251|Prosapip1|241638|ProSAPiP1 protein	NM_197945|Prosapip1|241638|ProSAPiP1 protein
mm9_v1_chr7_+_35971403_35971489	2.77471	NHLH1,2.p2	BC027516|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	NM_017394|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AK031867|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	BC054765|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	AB026688|Slc7a10|53896|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm9_v1_chr1_-_169323901_169323998	2.74754	NHLH1,2.p2	AK135742|Mgst3|66447|microsomal glutathione S-transferase 3	AK003309|Mgst3|66447|microsomal glutathione S-transferase 3	AK008533|Mgst3|66447|microsomal glutathione S-transferase 3	AK003476|Mgst3|66447|microsomal glutathione S-transferase 3	AK003492|Mgst3|66447|microsomal glutathione S-transferase 3	AK003246|Mgst3|66447|microsomal glutathione S-transferase 3	NM_025569|Mgst3|66447|microsomal glutathione S-transferase 3
mm9_v1_chr6_+_115084919_115085009	2.74608	NHLH1,2.p2	AF096867|Syn2|20965|synapsin II	NM_001111015|Syn2|20965|synapsin II	NM_013681|Syn2|20965|synapsin II	BC053427|Syn2|20965|synapsin II
mm9_v1_chr17_-_90855291_90855342	2.73919	NHLH1,2.p2	
mm9_v1_chr16_-_67621054_67621188	2.73119	NHLH1,2.p2	AK046800|Cadm2|239857|cell adhesion molecule 2	AK163636|Cadm2|239857|cell adhesion molecule 2	AK038842|Cadm2|239857|cell adhesion molecule 2	AK043760|Cadm2|239857|cell adhesion molecule 2	AK165030|Cadm2|239857|cell adhesion molecule 2	NM_001145977|Cadm2|239857|cell adhesion molecule 2	NM_178721|Cadm2|239857|cell adhesion molecule 2
mm9_v1_chr3_-_143865162_143865359	2.7214	NHLH1,2.p2	BC003488|Lmo4|16911|LIM domain only 4	BC100382|Lmo4|16911|LIM domain only 4	AF102817|Lmo4|16911|LIM domain only 4	AK138278|Lmo4|16911|LIM domain only 4	NM_001161770|Lmo4|16911|LIM domain only 4	NM_001161769|Lmo4|16911|LIM domain only 4
mm9_v1_chr2_+_132607013_132607168	2.71814	NHLH1,2.p2	AK158857|Chgb|12653|chromogranin B	NM_007694|Chgb|12653|chromogranin B
mm9_v1_chr16_+_17646562_17646710	2.71333	NHLH1,2.p2	NM_001166164|Ccdc74a|72315|coiled-coil domain containing 74A	AK009347|Ccdc74a|72315|coiled-coil domain containing 74A
mm9_v1_chr10_+_85484631_85484753	2.691	NHLH1,2.p2	AK165455|Fbxo7|69754|F-box protein 7	NM_153195|Fbxo7|69754|F-box protein 7	AK150626|Fbxo7|69754|F-box protein 7	AK151025|Fbxo7|69754|F-box protein 7	AK152513|Fbxo7|69754|F-box protein 7	AK147797|Fbxo7|69754|F-box protein 7	BC032153|Fbxo7|69754|F-box protein 7
mm9_v1_chr16_+_17276434_17276446	2.69	NHLH1,2.p2	AB041601|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr7_-_125849230_125849252	2.6897	NHLH1,2.p2	AF212860|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK005361|Gde1|56209|glycerophosphodiester phosphodiesterase 1	NM_019580|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr10_-_120748007_120748075	2.68708	NHLH1,2.p2	AK173079|Tbc1d30|74694|TBC1 domain family, member 30	AK044521|Tbc1d30|74694|TBC1 domain family, member 30	BC072607|Tbc1d30|74694|TBC1 domain family, member 30	AK049989|Tbc1d30|74694|TBC1 domain family, member 30
mm9_v1_chr8_-_87296172_87296219	2.68642	NHLH1,2.p2	S81451|Nfix|18032|nuclear factor I/X
mm9_v1_chr12_-_80108263_80108327	2.6835	NHLH1,2.p2	BC066067|Tmem229b|268567|transmembrane protein 229B	NM_178745|Tmem229b|268567|transmembrane protein 229B	AK033403|Tmem229b|268567|transmembrane protein 229B	AK053623|Tmem229b|268567|transmembrane protein 229B
mm9_v1_chr14_-_13655558_13655588	2.67001	NHLH1,2.p2	D86214|Cadps|27062|Ca2+-dependent secretion activator	BC079679|Cadps|27062|Ca2+-dependent secretion activator
mm9_v1_chr16_-_17576750_17576790	2.66503	NHLH1,2.p2	AK030586|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	AK043772|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	NM_144852|Slc7a4|224022|solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
mm9_v1_chr7_+_127986324_127986492	2.65827	NHLH1,2.p2	AK028524|Eef2k|13631|eukaryotic elongation factor-2 kinase	BC003433|Eef2k|13631|eukaryotic elongation factor-2 kinase	NM_007908|Eef2k|13631|eukaryotic elongation factor-2 kinase
mm9_v1_chr8_+_119780918_119781056	2.64173	NHLH1,2.p2	NM_001163262|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	AK085367|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene	BC158118|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chr18_+_32536898_32536994	2.64125	NHLH1,2.p2	BC065160|Bin1|30948|bridging integrator 1
mm9_v1_chr2_-_25221101_25221190	2.63763	NHLH1,2.p2	BC043307|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077912|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK151942|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	NM_001033293|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK149178|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK168977|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK159787|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	AK077550|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	BC130030|Uap1l1|227620|UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
mm9_v1_chr7_-_112630662_112630781	2.63629	NHLH1,2.p2	BC009660|Prkcdbp|109042|protein kinase C, delta binding protein	NM_028444|Prkcdbp|109042|protein kinase C, delta binding protein
mm9_v1_chr17_-_36034316_36034327	2.63112	NHLH1,2.p2	NM_001033630|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr15_+_99869071_99869185	2.62008	NHLH1,2.p2	NM_001159361|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)	AK147562|Dip2b|239667|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm9_v1_chr3_+_145421870_145422044	2.61982	NHLH1,2.p2	AK149185|Ddah1|69219|dimethylarginine dimethylaminohydrolase 1
mm9_v1_chr9_-_56483379_56483515	2.61759	NHLH1,2.p2	AK034084|Lingo1|235402|leucine rich repeat and Ig domain containing 1
mm9_v1_chr7_+_73984620_73984668	2.61722	NHLH1,2.p2	AK045148|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	AK053131|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	NM_001033877|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	BC141170|Adamts17|233332|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm9_v1_chr18_+_45719101_45719122	2.61465	NHLH1,2.p2	AK149082|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK039033|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr19_+_4510471_4510550	2.60811	NHLH1,2.p2	NM_001162946|Pcx|18563|pyruvate carboxylase	AK170596|Pcx|18563|pyruvate carboxylase	AK170871|Pcx|18563|pyruvate carboxylase	AK148328|Pcx|18563|pyruvate carboxylase	BC055030|Pcx|18563|pyruvate carboxylase	AK128927|Pcx|18563|pyruvate carboxylase	AK172320|Pcx|18563|pyruvate carboxylase
mm9_v1_chrX_+_133200982_133201022	2.60777	NHLH1,2.p2	AK003156|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK017585|Tceal3|594844|transcription elongation factor A (SII)-like 3	BC027131|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr4_+_97444563_97444661	2.5986	NHLH1,2.p2	D90176|Nfia|18027|nuclear factor I/A	Y07690|Nfia|18027|nuclear factor I/A	Y07691|Nfia|18027|nuclear factor I/A	BC122878|Nfia|18027|nuclear factor I/A	BC122880|Nfia|18027|nuclear factor I/A	AF326553|Nfia|18027|nuclear factor I/A	AF326554|Nfia|18027|nuclear factor I/A	U57633|Nfia|18027|nuclear factor I/A
mm9_v1_chr6_-_126114938_126114977	2.58962	NHLH1,2.p2	BC065785|Ntf3|18205|neurotrophin 3	AK132586|Ntf3|18205|neurotrophin 3	NM_001164035|Ntf3|18205|neurotrophin 3
mm9_v1_chr12_+_79327737_79327754	2.57544	NHLH1,2.p2	AK183551|Gphn|268566|gephyrin
mm9_v1_chr11_+_31770872_31770914	2.5593	NHLH1,2.p2	AK154289|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4	AK089951|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4	AK162101|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4
mm9_v1_chr7_+_64846528_64846556	2.55924	NHLH1,2.p2	AK083051|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	NM_008071|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr9_+_69137659_69137691	2.55615	NHLH1,2.p2	Z82994|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr5_-_17866110_17866320	2.54604	NHLH1,2.p2	BC138862|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	BC138865|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	BC032995|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1	NM_010305|Gnai1|14677|guanine nucleotide binding protein (G protein), alpha inhibiting 1
mm9_v1_chr18_+_32536846_32536879	2.53149	NHLH1,2.p2	NM_001083334|Bin1|30948|bridging integrator 1	NM_009668|Bin1|30948|bridging integrator 1
mm9_v1_chr7_+_133920438_133920526	2.5307	NHLH1,2.p2	AK003371|Ypel3|66090|yippee-like 3 (Drosophila)	NM_025347|Ypel3|66090|yippee-like 3 (Drosophila)	NM_026875|Ypel3|66090|yippee-like 3 (Drosophila)	AF523353|Ypel3|66090|yippee-like 3 (Drosophila)	AK002925|Ypel3|66090|yippee-like 3 (Drosophila)	BC009171|Ypel3|66090|yippee-like 3 (Drosophila)
mm9_v1_chr15_-_76181083_76181141	2.52173	NHLH1,2.p2	AK002878|Sharpin|106025|SHANK-associated RH domain interacting protein	AK003578|Sharpin|106025|SHANK-associated RH domain interacting protein	AK053893|Sharpin|106025|SHANK-associated RH domain interacting protein
mm9_v1_chr11_+_103994128_103994138	2.5185	NHLH1,2.p2	AK144430|Crhr1|12921|corticotropin releasing hormone receptor 1
mm9_v1_chr12_+_79327673_79327723	2.50373	NHLH1,2.p2	AK082353|Gphn|268566|gephyrin	BC127058|Gphn|268566|gephyrin
mm9_v1_chr15_-_58654964_58655084	2.49606	NHLH1,2.p2	BC096426|Tmem65|74868|transmembrane protein 65	NM_175212|Tmem65|74868|transmembrane protein 65	AK031886|Tmem65|74868|transmembrane protein 65	AK015335|Tmem65|74868|transmembrane protein 65
mm9_v1_chr13_-_54712629_54712744	2.48476	NHLH1,2.p2	AK029382|Cltb|74325|clathrin, light polypeptide (Lcb)	NM_028870|Cltb|74325|clathrin, light polypeptide (Lcb)	BC070404|Cltb|74325|clathrin, light polypeptide (Lcb)	AK045989|Cltb|74325|clathrin, light polypeptide (Lcb)	AK159480|Cltb|74325|clathrin, light polypeptide (Lcb)	AK167531|Cltb|74325|clathrin, light polypeptide (Lcb)	AK146816|Cltb|74325|clathrin, light polypeptide (Lcb)
mm9_v1_chr18_-_43059156_43059171	2.48143	NHLH1,2.p2	AK079059|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr17_-_66868909_66869045	2.48141	NHLH1,2.p2	AB232607|Rab12|19328|RAB12, member RAS oncogene family	NM_024448|Rab12|19328|RAB12, member RAS oncogene family
mm9_v1_chr11_+_121296252_121296285	2.47193	NHLH1,2.p2	NM_001038699|Fn3k|63828|fructosamine 3 kinase	NM_022014|Fn3k|63828|fructosamine 3 kinase	AK010151|Fn3k|63828|fructosamine 3 kinase	BC064710|Fn3k|63828|fructosamine 3 kinase	AJ404616|Fn3k|63828|fructosamine 3 kinase	AK030362|Fn3k|63828|fructosamine 3 kinase	AK172235|Fn3k|63828|fructosamine 3 kinase	BC054374|Fn3k|63828|fructosamine 3 kinase
mm9_v1_chr2_-_90420626_90420803	2.4644	NHLH1,2.p2	AY038891|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AY039232|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147318|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	AK147556|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	D45212|Ptprj|19271|protein tyrosine phosphatase, receptor type, J	NM_008982|Ptprj|19271|protein tyrosine phosphatase, receptor type, J
mm9_v1_chr7_+_72789752_72789811	2.45754	NHLH1,2.p2	AK044290|Tarsl2|272396|threonyl-tRNA synthetase-like 2	NM_172310|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK041280|Tarsl2|272396|threonyl-tRNA synthetase-like 2	BC039225|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK079416|Tarsl2|272396|threonyl-tRNA synthetase-like 2	AK040927|Tarsl2|272396|threonyl-tRNA synthetase-like 2
mm9_v1_chr19_-_7292009_7292055	2.43932	NHLH1,2.p2	BC120708|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	BC120710|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	U37721|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	AK002524|Cox8a|12868|cytochrome c oxidase, subunit VIIIa	AK008594|Cox8a|12868|cytochrome c oxidase, subunit VIIIa
mm9_v1_chr7_-_86293852_86293959	2.43396	NHLH1,2.p2	AB021130|Mfge8|17304|milk fat globule-EGF factor 8 protein	AB025280|Mfge8|17304|milk fat globule-EGF factor 8 protein	Y11684|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK209209|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC018577|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003904|Mfge8|17304|milk fat globule-EGF factor 8 protein	BC003892|Mfge8|17304|milk fat globule-EGF factor 8 protein	M38337|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK089211|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK145183|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK169997|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK170935|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK171143|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK148371|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK087555|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK152088|Mfge8|17304|milk fat globule-EGF factor 8 protein	AK155047|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_001045489|Mfge8|17304|milk fat globule-EGF factor 8 protein	NM_008594|Mfge8|17304|milk fat globule-EGF factor 8 protein
mm9_v1_chr3_+_7366586_7366727	2.42902	NHLH1,2.p2	NM_008862|Pkia|18767|protein kinase inhibitor, alpha	BC048244|Pkia|18767|protein kinase inhibitor, alpha	AK139347|Pkia|18767|protein kinase inhibitor, alpha
mm9_v1_chr15_-_58913543_58913652	2.42766	NHLH1,2.p2	BC024131|Mtss1|211401|metastasis suppressor 1	AK083756|Mtss1|211401|metastasis suppressor 1	AK046628|Mtss1|211401|metastasis suppressor 1	AK129139|Mtss1|211401|metastasis suppressor 1	NM_001146180|Mtss1|211401|metastasis suppressor 1	NM_144800|Mtss1|211401|metastasis suppressor 1
mm9_v1_chr5_-_143084677_143084746	2.42522	NHLH1,2.p2	AY424299|Mmd2|75104|monocyte to macrophage differentiation-associated 2	BC025064|Mmd2|75104|monocyte to macrophage differentiation-associated 2	NM_175217|Mmd2|75104|monocyte to macrophage differentiation-associated 2
mm9_v1_chr16_+_93712194_93712253	2.42395	NHLH1,2.p2	AK002808|Dopey2|70028|dopey family member 2
mm9_v1_chr10_+_77044467_77044539	2.42289	NHLH1,2.p2	BC023961|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK088813|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK035696|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK098093|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK170971|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK167972|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK168164|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	BC032184|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	BC025533|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	NM_145925|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	BC029144|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK151639|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK152366|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK159987|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK170802|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK089887|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK170972|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK171140|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein	AK075773|Pttg1ip|108705|pituitary tumor-transforming 1 interacting protein
mm9_v1_chr16_+_38089536_38089600	2.42286	NHLH1,2.p2	AK171482|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr2_+_76244603_76244617	2.40829	NHLH1,2.p2	AK037703|Osbpl6|99031|oxysterol binding protein-like 6	AK157944|Osbpl6|99031|oxysterol binding protein-like 6	AK220498|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr14_-_46277772_46277802	2.39725	NHLH1,2.p2	AK155294|Ddhd1|114874|DDHD domain containing 1	AK170271|Ddhd1|114874|DDHD domain containing 1
mm9_v1_chr19_+_4855128_4855169	2.39512	NHLH1,2.p2	NM_019861|Ctsf|56464|cathepsin F	AK165416|Ctsf|56464|cathepsin F
mm9_v1_chr18_+_82723854_82723899	2.39084	NHLH1,2.p2	NM_001025251|Mbp|17196|myelin basic protein	NM_001025255|Mbp|17196|myelin basic protein	NM_001025256|Mbp|17196|myelin basic protein	NM_001025258|Mbp|17196|myelin basic protein	NM_001025259|Mbp|17196|myelin basic protein	AK079621|Mbp|17196|myelin basic protein	NM_001025254|Mbp|17196|myelin basic protein
mm9_v1_chr9_+_103014279_103014299	2.37055	NHLH1,2.p2	AK082732|Rab6b|270192|RAB6B, member RAS oncogene family
mm9_v1_chr6_+_125165597_125165677	2.36094	NHLH1,2.p2	AK018783|Vamp1|22317|vesicle-associated membrane protein 1	AK037711|Vamp1|22317|vesicle-associated membrane protein 1	AK078156|Vamp1|22317|vesicle-associated membrane protein 1	NM_001080557|Vamp1|22317|vesicle-associated membrane protein 1	NM_009496|Vamp1|22317|vesicle-associated membrane protein 1	BC057587|Vamp1|22317|vesicle-associated membrane protein 1	BC049902|Vamp1|22317|vesicle-associated membrane protein 1	U61751|Vamp1|22317|vesicle-associated membrane protein 1
mm9_v1_chr19_+_27291507_27291624	2.36061	NHLH1,2.p2	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr16_+_17276384_17276419	2.33757	NHLH1,2.p2	NM_177473|Tmem191c|224019|transmembrane protein 191C	AK016675|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chrX_-_154481213_154481299	2.33652	NHLH1,2.p2	
mm9_v1_chr5_-_124637176_124637203	2.33558	NHLH1,2.p2	AK129364|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	BC070452|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr3_+_137530830_137530868	2.33555	NHLH1,2.p2	BC117717|Dnajb14|70604|DnaJ (Hsp40) homolog, subfamily B, member 14	BC117718|Dnajb14|70604|DnaJ (Hsp40) homolog, subfamily B, member 14	AK160961|Dnajb14|70604|DnaJ (Hsp40) homolog, subfamily B, member 14
mm9_v1_chr18_+_38578583_38578694	2.33107	NHLH1,2.p2	AF220209|Ndfip1|65113|Nedd4 family interacting protein 1	AK050560|Ndfip1|65113|Nedd4 family interacting protein 1	BC026372|Ndfip1|65113|Nedd4 family interacting protein 1	NM_022996|Ndfip1|65113|Nedd4 family interacting protein 1	BC020359|Ndfip1|65113|Nedd4 family interacting protein 1
mm9_v1_chr14_+_63741339_63741389	2.32447	NHLH1,2.p2	AK002456|Ctsb|13030|cathepsin B	AK170968|Ctsb|13030|cathepsin B	AK147192|Ctsb|13030|cathepsin B	AK149884|Ctsb|13030|cathepsin B	AK153047|Ctsb|13030|cathepsin B	AK151790|Ctsb|13030|cathepsin B
mm9_v1_chr8_-_124102548_124102765	2.3176	NHLH1,2.p2	AB041586|Fbxo31|76454|F-box protein 31	AK163641|Fbxo31|76454|F-box protein 31	BC026929|Fbxo31|76454|F-box protein 31	AK140412|Fbxo31|76454|F-box protein 31	NM_133765|Fbxo31|76454|F-box protein 31
mm9_v1_chr18_+_32536882_32536891	2.30977	NHLH1,2.p2	U60884|Bin1|30948|bridging integrator 1
mm9_v1_chr1_-_133421746_133421916	2.30434	NHLH1,2.p2	BC158055|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	BC151081|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	BC151082|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2	BC172152|Srgap2|14270|SLIT-ROBO Rho GTPase activating protein 2
mm9_v1_chr7_-_36340918_36340946	2.29037	NHLH1,2.p2	BC051553|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	NM_033080|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr19_-_5085487_5085548	2.2891	NHLH1,2.p2	AK144531|Tmem151a|381199|transmembrane protein 151A	AK155690|Tmem151a|381199|transmembrane protein 151A	AK163651|Tmem151a|381199|transmembrane protein 151A	AK139456|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr9_+_45714587_45714651	2.27908	NHLH1,2.p2	AK050638|Rnf214|235315|ring finger protein 214	BC056456|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7	NM_008794|Pcsk7|18554|proprotein convertase subtilisin/kexin type 7
mm9_v1_chr2_+_70400179_70400352	2.2656	NHLH1,2.p2	AK054554|Gad1|14415|glutamic acid decarboxylase 1	NM_008077|Gad1|14415|glutamic acid decarboxylase 1	AK148497|Gad1|14415|glutamic acid decarboxylase 1	AK160868|Gad1|14415|glutamic acid decarboxylase 1	AK136801|Gad1|14415|glutamic acid decarboxylase 1	BC027059|Gad1|14415|glutamic acid decarboxylase 1	AF326547|Gad1|14415|glutamic acid decarboxylase 1	AF326548|Gad1|14415|glutamic acid decarboxylase 1	Z49976|Gad1|14415|glutamic acid decarboxylase 1
mm9_v1_chr1_-_80755061_80755129	2.26177	NHLH1,2.p2	AK172588|Dock10|210293|dedicator of cytokinesis 10	AK171746|Dock10|210293|dedicator of cytokinesis 10	AK042052|Dock10|210293|dedicator of cytokinesis 10	AK138722|Dock10|210293|dedicator of cytokinesis 10	NM_175291|Dock10|210293|dedicator of cytokinesis 10
mm9_v1_chr17_+_74154214_74154436	2.25946	NHLH1,2.p2	AK051717|Ehd3|57440|EH-domain containing 3	AF506002|Ehd3|57440|EH-domain containing 3	BC046596|Ehd3|57440|EH-domain containing 3
mm9_v1_chr2_-_148558110_148558202	2.25517	NHLH1,2.p2	AK078224|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC038362|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	AK083184|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	NM_019632|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC049874|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm9_v1_chr5_-_8367951_8368174	2.25302	NHLH1,2.p2	BC117707|Adam22|11496|a disintegrin and metallopeptidase domain 22	BC117708|Adam22|11496|a disintegrin and metallopeptidase domain 22	HM004095|Adam22|11496|a disintegrin and metallopeptidase domain 22	AB009674|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK082335|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007220|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001007221|Adam22|11496|a disintegrin and metallopeptidase domain 22	NM_001098225|Adam22|11496|a disintegrin and metallopeptidase domain 22	AK042962|Adam22|11496|a disintegrin and metallopeptidase domain 22
mm9_v1_chr8_-_97220127_97220176	2.24574	NHLH1,2.p2	AK018198|Pllp|67801|plasma membrane proteolipid	AK032540|Pllp|67801|plasma membrane proteolipid	BC024534|Pllp|67801|plasma membrane proteolipid	AK002477|Pllp|67801|plasma membrane proteolipid	NM_026385|Pllp|67801|plasma membrane proteolipid
mm9_v1_chr13_+_64263131_64263227	2.2429	NHLH1,2.p2	AK016800|Habp4|56541|hyaluronic acid binding protein 4	BC082806|Habp4|56541|hyaluronic acid binding protein 4	NM_019986|Habp4|56541|hyaluronic acid binding protein 4	AK144206|Habp4|56541|hyaluronic acid binding protein 4	AK146525|Habp4|56541|hyaluronic acid binding protein 4	AF227684|Habp4|56541|hyaluronic acid binding protein 4
mm9_v1_chr12_+_16660521_16660569	2.23235	NHLH1,2.p2	AK081073|Ntsr2|18217|neurotensin receptor 2	AK005368|Ntsr2|18217|neurotensin receptor 2
mm9_v1_chr9_+_51573434_51573478	2.22982	NHLH1,2.p2	AK082060|Arhgap20|244867|Rho GTPase activating protein 20	AK046916|Arhgap20|244867|Rho GTPase activating protein 20	AK040756|Arhgap20|244867|Rho GTPase activating protein 20	NM_175535|Arhgap20|244867|Rho GTPase activating protein 20	AK035563|Arhgap20|244867|Rho GTPase activating protein 20
mm9_v1_chrX_-_70905062_70905211	2.22831	NHLH1,2.p2	AK134665|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AF181984|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	NM_012040|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chr3_-_158224306_158224367	2.22436	NHLH1,2.p2	AK052066|Lrrc7|242274|leucine rich repeat containing 7	AK122498|Lrrc7|242274|leucine rich repeat containing 7
mm9_v1_chr14_-_124026357_124026365	2.22359	NHLH1,2.p2	AK040761|Nalcn|338370|sodium leak channel, non-selective	AK143219|Nalcn|338370|sodium leak channel, non-selective	NM_177393|Nalcn|338370|sodium leak channel, non-selective
mm9_v1_chr19_-_7292086_7292113	2.21931	NHLH1,2.p2	NM_007750|Cox8a|12868|cytochrome c oxidase, subunit VIIIa
mm9_v1_chr5_+_138721736_138721806	2.21882	NHLH1,2.p2	BC060184|Stag3|50878|stromal antigen 3	NM_016964|Stag3|50878|stromal antigen 3	AK145898|Stag3|50878|stromal antigen 3	AK158240|Stag3|50878|stromal antigen 3	AJ005678|Stag3|50878|stromal antigen 3	BC139010|Stag3|50878|stromal antigen 3	BC139011|Stag3|50878|stromal antigen 3
mm9_v1_chr10_-_105011265_105011266	2.19571	NHLH1,2.p2	BC138362|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	BC138363|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr6_-_23789259_23789331	2.19005	NHLH1,2.p2	AK046596|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK042634|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291949|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK163203|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	NM_153163|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291948|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291950|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr8_-_30330079_30330107	2.1893	NHLH1,2.p2	AJ487854|Unc5d|210801|unc-5 homolog D (C. elegans)	NM_153135|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr1_-_88567078_88567149	2.18063	NHLH1,2.p2	BC111834|Nppc|18159|natriuretic peptide type C	AK036176|Nppc|18159|natriuretic peptide type C	NM_010933|Nppc|18159|natriuretic peptide type C	AK020093|Nppc|18159|natriuretic peptide type C
mm9_v1_chr9_-_86775282_86775289	2.17984	NHLH1,2.p2	BC052454|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr14_+_63741286_63741338	2.17697	NHLH1,2.p2	AK083393|Ctsb|13030|cathepsin B	NM_007798|Ctsb|13030|cathepsin B	S69034|Ctsb|13030|cathepsin B	BC006656|Ctsb|13030|cathepsin B	AK159992|Ctsb|13030|cathepsin B	AK167361|Ctsb|13030|cathepsin B	AK170959|Ctsb|13030|cathepsin B
mm9_v1_chr8_+_107064705_107064811	2.17589	NHLH1,2.p2	AK090390|Car7|12354|carbonic anhydrase 7	AY075021|Car7|12354|carbonic anhydrase 7	NM_053070|Car7|12354|carbonic anhydrase 7	BC094913|Car7|12354|carbonic anhydrase 7	AF291660|Car7|12354|carbonic anhydrase 7
mm9_v1_chr12_+_83717883_83718024	2.17499	NHLH1,2.p2	AK139323|Rgs6|50779|regulator of G-protein signaling 6	AK052527|Rgs6|50779|regulator of G-protein signaling 6	NM_015812|Rgs6|50779|regulator of G-protein signaling 6
mm9_v1_chr2_+_164312087_164312169	2.17426	NHLH1,2.p2	AK013571|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr8_+_124114323_124114400	2.17162	NHLH1,2.p2	AF255953|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK132329|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC068180|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK002795|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003558|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK012604|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003106|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK003205|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	NM_026160|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	AK151614|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC028812|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC110308|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta	BC086774|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta
mm9_v1_chr16_+_93712151_93712182	2.15631	NHLH1,2.p2	NM_026700|Dopey2|70028|dopey family member 2	NM_027293|Dopey2|70028|dopey family member 2	AK147255|Dopey2|70028|dopey family member 2	AK164839|Dopey2|70028|dopey family member 2	AK156170|Dopey2|70028|dopey family member 2
mm9_v1_chr17_-_25073897_25073943	2.15608	NHLH1,2.p2	BC068312|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB005662|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF262046|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178637|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC065105|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163447|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163448|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163449|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163450|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163451|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_001163453|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	NM_013931|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr18_-_10610261_10610307	2.1529	NHLH1,2.p2	BC151069|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC151077|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)	BC172153|Esco1|77805|establishment of cohesion 1 homolog 1 (S. cerevisiae)
mm9_v1_chr8_+_35217674_35217675	2.15195	NHLH1,2.p2	BC013497|Tmem66|67887|transmembrane protein 66
mm9_v1_chr7_-_148513391_148513554	2.14298	NHLH1,2.p2	AK144333|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AK158586|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	FJ377319|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AF102818|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AK082115|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	FJ377318|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	AK146546|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)
mm9_v1_chr17_-_24826812_24826871	2.14087	NHLH1,2.p2	AK048753|Syngr3|20974|synaptogyrin 3	AK082167|Syngr3|20974|synaptogyrin 3	BC025022|Syngr3|20974|synaptogyrin 3	AK080129|Syngr3|20974|synaptogyrin 3	AK087538|Syngr3|20974|synaptogyrin 3
mm9_v1_chr3_-_143868114_143868170	2.14043	NHLH1,2.p2	AK033097|Lmo4|16911|LIM domain only 4	AK159590|Lmo4|16911|LIM domain only 4
mm9_v1_chr4_-_124527811_124527973	2.13379	NHLH1,2.p2	NM_001142727|1110065P20Rik|68920|RIKEN cDNA 1110065P20 gene
mm9_v1_chr8_+_86423968_86424035	2.13347	NHLH1,2.p2	NM_181039|Lphn1|330814|latrophilin 1	AK147455|Lphn1|330814|latrophilin 1
mm9_v1_chr2_+_164313584_164313634	2.1259	NHLH1,2.p2	NM_001048229|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr18_+_67247984_67247998	2.12472	NHLH1,2.p2	AK045484|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	BC078439|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	NM_177137|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type
mm9_v1_chr6_+_29867012_29867023	2.12432	NHLH1,2.p2	AK041004|Fam40b|320609|family with sequence similarity 40, member B	AK042073|Fam40b|320609|family with sequence similarity 40, member B	AK052271|Fam40b|320609|family with sequence similarity 40, member B	AK163706|Fam40b|320609|family with sequence similarity 40, member B	NM_001037740|Fam40b|320609|family with sequence similarity 40, member B	NM_177204|Fam40b|320609|family with sequence similarity 40, member B	BC147502|Fam40b|320609|family with sequence similarity 40, member B	BC172034|Fam40b|320609|family with sequence similarity 40, member B
mm9_v1_chr7_+_146574969_146575035	2.11354	NHLH1,2.p2	BC056341|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_001127363|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	NM_183144|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK083449|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171360|Inpp5a|212111|inositol polyphosphate-5-phosphatase A	AK171880|Inpp5a|212111|inositol polyphosphate-5-phosphatase A
mm9_v1_chr14_+_55555300_55555355	2.11164	NHLH1,2.p2	AK005168|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	AK013666|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	NM_026066|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	AY241867|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	BC049665|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	DQ115983|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5	AK005375|Cmtm5|67272|CKLF-like MARVEL transmembrane domain containing 5
mm9_v1_chr15_-_33617572_33617639	2.10506	NHLH1,2.p2	AK087510|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	AK173253|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	BC079547|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	NM_001085421|Tspyl5|239364|testis-specific protein, Y-encoded-like 5
mm9_v1_chr11_-_59263437_59263506	2.09769	NHLH1,2.p2	BC023182|Snap47|67826|synaptosomal-associated protein, 47	NM_144521|Snap47|67826|synaptosomal-associated protein, 47	BC029025|Snap47|67826|synaptosomal-associated protein, 47	AK028053|Snap47|67826|synaptosomal-associated protein, 47	AK081883|Snap47|67826|synaptosomal-associated protein, 47	AK075640|Snap47|67826|synaptosomal-associated protein, 47	AK049330|Snap47|67826|synaptosomal-associated protein, 47
mm9_v1_chr9_-_44607274_44607334	2.0902	NHLH1,2.p2	AK090375|Tmem25|71687|transmembrane protein 25	AK165827|Tmem25|71687|transmembrane protein 25	AK002841|Tmem25|71687|transmembrane protein 25	NM_027865|Tmem25|71687|transmembrane protein 25	BC060057|Tmem25|71687|transmembrane protein 25	BC060243|Tmem25|71687|transmembrane protein 25	AK154206|Tmem25|71687|transmembrane protein 25	AK165199|Tmem25|71687|transmembrane protein 25
mm9_v1_chr13_+_43493989_43494007	2.08963	NHLH1,2.p2	
mm9_v1_chr7_-_67149962_67150045	2.0886	NHLH1,2.p2	BC069894|Snrpn|20646|small nuclear ribonucleoprotein N	BC024880|Snrpn|20646|small nuclear ribonucleoprotein N	BC019589|Snrpn|20646|small nuclear ribonucleoprotein N	BC132082|Snurf|84704|SNRPN upstream reading frame	BC132084|Snurf|84704|SNRPN upstream reading frame	AK013607|Snrpn|20646|small nuclear ribonucleoprotein N	AK144386|Snrpn|20646|small nuclear ribonucleoprotein N	AF101042|Snurf|84704|SNRPN upstream reading frame	NM_013670|Snrpn|20646|small nuclear ribonucleoprotein N	NM_033174|Snurf|84704|SNRPN upstream reading frame
mm9_v1_chr19_-_7292057_7292085	2.08533	NHLH1,2.p2	AK002218|Cox8a|12868|cytochrome c oxidase, subunit VIIIa
mm9_v1_chr12_+_17697604_17697620	2.07877	NHLH1,2.p2	NM_016677|Hpcal1|53602|hippocalcin-like 1
mm9_v1_chr11_-_33893151_33893192	2.06255	NHLH1,2.p2	AK048178|Kcnip1|70357|Kv channel-interacting protein 1	AK081845|Kcnip1|70357|Kv channel-interacting protein 1	DQ148494|Kcnip1|70357|Kv channel-interacting protein 1	NM_001190886|Kcnip1|70357|Kv channel-interacting protein 1
mm9_v1_chr11_-_110198921_110198958	2.05859	NHLH1,2.p2	AK046203|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK169879|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK138604|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK162579|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5
mm9_v1_chr5_-_136410488_136410547	2.0577	NHLH1,2.p2	NM_018871|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr1_-_160286359_160286472	2.05455	NHLH1,2.p2	BC067038|Fam5b|240843|family with sequence similarity 5, member B	BC076572|Fam5b|240843|family with sequence similarity 5, member B	NM_207583|Fam5b|240843|family with sequence similarity 5, member B	AK032297|Fam5b|240843|family with sequence similarity 5, member B	AK047824|Fam5b|240843|family with sequence similarity 5, member B	AK122549|Fam5b|240843|family with sequence similarity 5, member B
mm9_v1_chr17_-_24826873_24826911	2.04718	NHLH1,2.p2	AF117207|Syngr3|20974|synaptogyrin 3	AK081164|Syngr3|20974|synaptogyrin 3	NM_011522|Syngr3|20974|synaptogyrin 3
mm9_v1_chr7_-_117009158_117009192	2.04019	NHLH1,2.p2	AK142950|Scube2|56788|signal peptide, CUB domain, EGF-like 2	NM_020052|Scube2|56788|signal peptide, CUB domain, EGF-like 2
mm9_v1_chr5_+_33361386_33361464	2.03462	NHLH1,2.p2	NM_011738|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr2_+_25118098_25118140	2.02827	NHLH1,2.p2	AK171799|Tprn|97031|taperin	NM_175286|Tprn|97031|taperin	AK082888|Tprn|97031|taperin
mm9_v1_chr10_+_79167255_79167267	2.02816	NHLH1,2.p2	BC010270|Bsg|12215|basigin
mm9_v1_chr4_+_97444312_97444317	2.022	NHLH1,2.p2	NM_001122953|Nfia|18027|nuclear factor I/A	NM_010905|Nfia|18027|nuclear factor I/A
mm9_v1_chr8_+_113245378_113245384	2.02093	NHLH1,2.p2	BC060632|Mtss1l|244654|metastasis suppressor 1-like	NM_198625|Mtss1l|244654|metastasis suppressor 1-like
mm9_v1_chr6_+_114232767_114232820	2.01836	NHLH1,2.p2	AK042956|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	BC059080|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK047663|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK053831|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK053798|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK052971|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1	AK053883|Slc6a1|232333|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm9_v1_chr14_-_73785035_73785066	2.0129	NHLH1,2.p2	AK002599|Itm2b|16432|integral membrane protein 2B	AK153103|Itm2b|16432|integral membrane protein 2B	AK159307|Itm2b|16432|integral membrane protein 2B	AK003224|Itm2b|16432|integral membrane protein 2B	BC004731|Itm2b|16432|integral membrane protein 2B	AK003587|Itm2b|16432|integral membrane protein 2B	AK003928|Itm2b|16432|integral membrane protein 2B	AK088270|Itm2b|16432|integral membrane protein 2B	AK159340|Itm2b|16432|integral membrane protein 2B	AK159426|Itm2b|16432|integral membrane protein 2B	AK159628|Itm2b|16432|integral membrane protein 2B	AK159792|Itm2b|16432|integral membrane protein 2B	AK160101|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr10_-_109892899_109893037	2.00849	NHLH1,2.p2	AK080592|Gm3877|100042510|predicted gene 3877	AK035945|Nav3|260315|neuron navigator 3
mm9_v1_chr18_+_38115192_38115292	2.00681	NHLH1,2.p2	NM_153793|Rell2|225392|RELT-like 2	AK044097|Rell2|225392|RELT-like 2	BC038500|Rell2|225392|RELT-like 2
mm9_v1_chr14_-_124026097_124026182	2.00596	NHLH1,2.p2	AK043071|Nalcn|338370|sodium leak channel, non-selective	AK036122|Nalcn|338370|sodium leak channel, non-selective	AK039034|Nalcn|338370|sodium leak channel, non-selective
mm9_v1_chr12_-_5382487_5382487	2.005	NHLH1,2.p2	BC065168|Klhl29|208439|kelch-like 29 (Drosophila)	NM_001164493|Klhl29|208439|kelch-like 29 (Drosophila)
mm9_v1_chr7_+_17530050_17530063	1.99444	NHLH1,2.p2	AK143183|Pnmal2|434128|PNMA-like 2
mm9_v1_chr11_+_109301411_109301484	1.9906	NHLH1,2.p2	AK085963|Amz2|13929|archaelysin family metallopeptidase 2
mm9_v1_chr5_+_107926763_107926815	1.98845	NHLH1,2.p2	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr7_+_51846254_51846289	1.98447	NHLH1,2.p2	NM_008422|Kcnc3|16504|potassium voltage gated channel, Shaw-related subfamily, member 3
mm9_v1_chr8_+_35217633_35217673	1.98238	NHLH1,2.p2	BC022616|Tmem66|67887|transmembrane protein 66	AK093942|Tmem66|67887|transmembrane protein 66
mm9_v1_chr7_-_125849255_125849313	1.98047	NHLH1,2.p2	AK004583|Gde1|56209|glycerophosphodiester phosphodiesterase 1	AK150807|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr13_-_10360048_10360092	1.94327	NHLH1,2.p2	AK080950|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac	NM_033269|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac	AK051841|Chrm3|12671|cholinergic receptor, muscarinic 3, cardiac
mm9_v1_chr2_-_163744663_163744747	1.93946	NHLH1,2.p2	AK134613|Rims4|241770|regulating synaptic membrane exocytosis 4
mm9_v1_chr4_-_154719834_154719909	1.93663	NHLH1,2.p2	AB110830|Prkcz|18762|protein kinase C, zeta	AK042562|Prkcz|18762|protein kinase C, zeta	AK049959|Prkcz|18762|protein kinase C, zeta	NM_001039079|Prkcz|18762|protein kinase C, zeta	BC072590|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr11_+_3414884_3414917	1.93503	NHLH1,2.p2	AK079358|Selm|114679|selenoprotein M	AY043488|Selm|114679|selenoprotein M	AK046034|Selm|114679|selenoprotein M	AK035312|Selm|114679|selenoprotein M	AK086243|Selm|114679|selenoprotein M
mm9_v1_chr7_-_118226462_118226512	1.93335	NHLH1,2.p2	U63323|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC092521|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC056387|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr15_-_83936038_83936094	1.93286	NHLH1,2.p2	AK010293|Sult4a1|29859|sulfotransferase family 4A, member 1	AK003034|Sult4a1|29859|sulfotransferase family 4A, member 1	AF059257|Sult4a1|29859|sulfotransferase family 4A, member 1	BC051132|Sult4a1|29859|sulfotransferase family 4A, member 1	AK046368|Sult4a1|29859|sulfotransferase family 4A, member 1	AK032195|Sult4a1|29859|sulfotransferase family 4A, member 1	AK159034|Sult4a1|29859|sulfotransferase family 4A, member 1
mm9_v1_chr11_+_54911540_54911679	1.92463	NHLH1,2.p2	AK149642|Gm2a|14667|GM2 ganglioside activator protein	AK152256|Gm2a|14667|GM2 ganglioside activator protein	U09816|Gm2a|14667|GM2 ganglioside activator protein	BC004651|Gm2a|14667|GM2 ganglioside activator protein	NM_010299|Gm2a|14667|GM2 ganglioside activator protein	L19526|Gm2a|14667|GM2 ganglioside activator protein	CT010289|Gm2a|14667|GM2 ganglioside activator protein	AK179394|Gm2a|14667|GM2 ganglioside activator protein	AK181597|Gm2a|14667|GM2 ganglioside activator protein
mm9_v1_chr12_+_112512884_112512979	1.9179	NHLH1,2.p2	AK088429|Amn|93835|amnionless
mm9_v1_chrX_-_159081510_159081550	1.9177	NHLH1,2.p2	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr17_-_46624611_46624627	1.91611	NHLH1,2.p2	NM_001162864|Ttbk1|106763|tau tubulin kinase 1
mm9_v1_chr5_+_33361479_33361562	1.91338	NHLH1,2.p2	AK149224|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK083936|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	D87661|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	BC061497|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AF077002|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr17_-_27341189_27341265	1.91136	NHLH1,2.p2	AK082131|Lemd2|224640|LEM domain containing 2
mm9_v1_chr15_+_99125666_99125690	1.89864	NHLH1,2.p2	BC058389|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	BC082994|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK140075|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	AK164947|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr10_-_76880977_76881002	1.89522	NHLH1,2.p2	AK164931|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AK141777|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr19_+_5741862_5742203	1.87763	NHLH1,2.p2	L40459|Ltbp3|16998|latent transforming growth factor beta binding protein 3	BC127051|Ltbp3|16998|latent transforming growth factor beta binding protein 3
mm9_v1_chr17_+_74154180_74154211	1.87666	NHLH1,2.p2	AK141265|Ehd3|57440|EH-domain containing 3	NM_020578|Ehd3|57440|EH-domain containing 3	AK128964|Ehd3|57440|EH-domain containing 3	AF155883|Ehd3|57440|EH-domain containing 3
mm9_v1_chr7_+_120909680_120909687	1.87625	NHLH1,2.p2	AK134774|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein	AK146506|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chr1_-_79855209_79855213	1.87396	NHLH1,2.p2	AK045954|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK047856|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK051332|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK159687|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK160700|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	AK164270|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2	X70296|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr10_-_75022948_75023074	1.8726	NHLH1,2.p2	BC055322|AI646023|192734|expressed sequence AI646023	BC056492|AI646023|192734|expressed sequence AI646023	NM_198860|AI646023|192734|expressed sequence AI646023
mm9_v1_chrX_+_148578716_148578819	1.87193	NHLH1,2.p2	AB275281|Iqsec2|245666|IQ motif and Sec7 domain 2	NM_001114664|Iqsec2|245666|IQ motif and Sec7 domain 2	AY451401|Iqsec2|245666|IQ motif and Sec7 domain 2
mm9_v1_chr2_-_33226946_33226968	1.8694	NHLH1,2.p2	BC072656|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK170248|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1
mm9_v1_chr6_-_120866775_120866878	1.85479	NHLH1,2.p2	AK077657|Bid|12122|BH3 interacting domain death agonist	BC002031|Bid|12122|BH3 interacting domain death agonist	NM_007544|Bid|12122|BH3 interacting domain death agonist	AK052356|Bid|12122|BH3 interacting domain death agonist	AK045731|Bid|12122|BH3 interacting domain death agonist	AK051076|Bid|12122|BH3 interacting domain death agonist	AK161235|Bid|12122|BH3 interacting domain death agonist
mm9_v1_chr15_-_81524457_81524636	1.85008	NHLH1,2.p2	AK086273|Chadl|214685|chondroadherin-like	AK139481|Chadl|214685|chondroadherin-like
mm9_v1_chr11_-_102180374_102180491	1.84985	NHLH1,2.p2	BC004676|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_011551|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr2_-_122436933_122437055	1.83969	NHLH1,2.p2	BC003879|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK153450|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145862|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146052|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK151313|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK007325|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK145914|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK146111|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	AK152069|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)	NM_025961|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm9_v1_chr19_+_32832002_32832163	1.83838	NHLH1,2.p2	NM_008960|Pten|19211|phosphatase and tensin homolog	AK164302|Pten|19211|phosphatase and tensin homolog	AK088717|Pten|19211|phosphatase and tensin homolog	AK076980|Pten|19211|phosphatase and tensin homolog
mm9_v1_chr9_-_58050091_58050164	1.83134	NHLH1,2.p2	NM_001161536|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_177193|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161539|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr8_-_48374755_48374779	1.82928	NHLH1,2.p2	AK053894|Stox2|71069|storkhead box 2	NM_001114311|Stox2|71069|storkhead box 2
mm9_v1_chr11_+_84771242_84771341	1.82006	NHLH1,2.p2	NM_007607|Car4|12351|carbonic anhydrase 4	AK154754|Car4|12351|carbonic anhydrase 4	AK165399|Car4|12351|carbonic anhydrase 4	BC012704|Car4|12351|carbonic anhydrase 4
mm9_v1_chr15_-_72640341_72640463	1.8184	NHLH1,2.p2	AK158316|Peg13|353342|paternally expressed 13	AK154204|Peg13|353342|paternally expressed 13	AY151253|Peg13|353342|paternally expressed 13
mm9_v1_chr7_+_53039273_53039322	1.81495	NHLH1,2.p2	BC094377|Lmtk3|381983|lemur tyrosine kinase 3	NM_001005511|Lmtk3|381983|lemur tyrosine kinase 3	AB288873|Lmtk3|381983|lemur tyrosine kinase 3
mm9_v1_chr9_-_65427840_65427883	1.81244	NHLH1,2.p2	BC028908|Plekho2|102595|pleckstrin homology domain containing, family O member 2	NM_153119|Plekho2|102595|pleckstrin homology domain containing, family O member 2	AK170479|Plekho2|102595|pleckstrin homology domain containing, family O member 2	AK028069|Plekho2|102595|pleckstrin homology domain containing, family O member 2
mm9_v1_chr2_-_152777135_152777317	1.80886	NHLH1,2.p2	BC116841|Dusp15|252864|dual specificity phosphatase-like 15	BC116843|Dusp15|252864|dual specificity phosphatase-like 15	BC144711|Dusp15|252864|dual specificity phosphatase-like 15	AF357887|Dusp15|252864|dual specificity phosphatase-like 15	NM_145744|Dusp15|252864|dual specificity phosphatase-like 15	NM_001159376|Dusp15|252864|dual specificity phosphatase-like 15
mm9_v1_chr2_-_165298664_165298723	1.80723	NHLH1,2.p2	AK157881|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	BC028882|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	BC026803|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AF306491|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK165355|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK085326|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK087518|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK128982|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK138344|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	NM_054055|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	AK086775|Slc13a3|114644|solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
mm9_v1_chr8_+_65430028_65430291	1.79414	NHLH1,2.p2	AJ278998|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK049843|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK220280|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK013644|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC017601|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	NM_023689|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	AK164338|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	BC053334|Spock3|72902|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm9_v1_chr6_+_13019758_13019870	1.79095	NHLH1,2.p2	NM_027992|Tmem106b|71900|transmembrane protein 106B	AK148477|Tmem106b|71900|transmembrane protein 106B	BC050246|Tmem106b|71900|transmembrane protein 106B	AK018015|Tmem106b|71900|transmembrane protein 106B	AK009646|Tmem106b|71900|transmembrane protein 106B
mm9_v1_chr2_+_90730089_90730144	1.78465	NHLH1,2.p2	AK029777|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr10_-_80039973_80040065	1.78385	NHLH1,2.p2	BC137607|Klf16|118445|Kruppel-like factor 16	BC137609|Klf16|118445|Kruppel-like factor 16	AF283891|Klf16|118445|Kruppel-like factor 16	AK044577|Klf16|118445|Kruppel-like factor 16	NM_078477|Klf16|118445|Kruppel-like factor 16	AK154524|Klf16|118445|Kruppel-like factor 16
mm9_v1_chr8_-_124431581_124431590	1.78366	NHLH1,2.p2	AK142288|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	NM_011404|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr10_-_61573705_61573762	1.78282	NHLH1,2.p2	BC024943|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK008338|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	AK035688|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene	NM_027251|2010107G23Rik|69894|RIKEN cDNA 2010107G23 gene
mm9_v1_chr7_-_30066910_30067008	1.77872	NHLH1,2.p2	AF099016|Spint2|20733|serine protease inhibitor, Kunitz type 2	AF099019|Spint2|20733|serine protease inhibitor, Kunitz type 2	AF099020|Spint2|20733|serine protease inhibitor, Kunitz type 2	BC003431|Spint2|20733|serine protease inhibitor, Kunitz type 2	NM_001082548|Spint2|20733|serine protease inhibitor, Kunitz type 2	NM_011464|Spint2|20733|serine protease inhibitor, Kunitz type 2
mm9_v1_chr17_+_34093007_34093064	1.77765	NHLH1,2.p2	AX775735|Vps52|224705|vacuolar protein sorting 52 (yeast)
mm9_v1_chr9_-_121905086_121905164	1.77149	NHLH1,2.p2	BC025056|C85492|215494|expressed sequence C85492	BC030931|C85492|215494|expressed sequence C85492	AK042747|C85492|215494|expressed sequence C85492	AK133802|C85492|215494|expressed sequence C85492	AK034473|C85492|215494|expressed sequence C85492	AK054403|C85492|215494|expressed sequence C85492	NM_153540|C85492|215494|expressed sequence C85492
mm9_v1_chr10_+_3134299_3134312	1.7627	NHLH1,2.p2	AK033015|Cnksr3|215748|Cnksr family member 3	NM_172546|Cnksr3|215748|Cnksr family member 3
mm9_v1_chr12_-_25780932_25780960	1.75771	NHLH1,2.p2	BC006921|Id2|15902|inhibitor of DNA binding 2	BC053699|Id2|15902|inhibitor of DNA binding 2	M69293|Id2|15902|inhibitor of DNA binding 2	AK013239|Id2|15902|inhibitor of DNA binding 2	AK013378|Id2|15902|inhibitor of DNA binding 2	AK003222|Id2|15902|inhibitor of DNA binding 2	AK146346|Id2|15902|inhibitor of DNA binding 2	AK135547|Id2|15902|inhibitor of DNA binding 2	NM_010496|Id2|15902|inhibitor of DNA binding 2	AK146606|Id2|15902|inhibitor of DNA binding 2
mm9_v1_chr15_-_57723866_57723934	1.75609	NHLH1,2.p2	AK075631|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chrX_+_162676870_162676901	1.75483	NHLH1,2.p2	NM_001177961|Gpm6b|14758|glycoprotein m6b	NM_001177962|Gpm6b|14758|glycoprotein m6b	NM_023122|Gpm6b|14758|glycoprotein m6b	AK132778|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr9_-_54349377_54349403	1.75414	NHLH1,2.p2	AK032099|Dmxl2|235380|Dmx-like 2
mm9_v1_chr9_-_58049842_58049944	1.74986	NHLH1,2.p2	EU497918|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	BC059068|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr2_-_30997447_30997496	1.74635	NHLH1,2.p2	BC003867|Fnbp1|14269|formin binding protein 1	AK172100|Fnbp1|14269|formin binding protein 1	AK170497|Fnbp1|14269|formin binding protein 1
mm9_v1_chr3_-_80717517_80717574	1.74314	NHLH1,2.p2	BC027094|Glrb|14658|glycine receptor, beta subunit	BC037605|Glrb|14658|glycine receptor, beta subunit	NM_010298|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr4_-_137882142_137882214	1.74117	NHLH1,2.p2	AB053476|Pink1|68943|PTEN induced putative kinase 1	BC069968|Pink1|68943|PTEN induced putative kinase 1	AK220318|Pink1|68943|PTEN induced putative kinase 1	BC018594|Pink1|68943|PTEN induced putative kinase 1	BC067066|Pink1|68943|PTEN induced putative kinase 1	AF316872|Pink1|68943|PTEN induced putative kinase 1	AK050322|Pink1|68943|PTEN induced putative kinase 1	AK165480|Pink1|68943|PTEN induced putative kinase 1	AK155474|Pink1|68943|PTEN induced putative kinase 1	NM_026880|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr7_-_80703275_80703327	1.73971	NHLH1,2.p2	AK140938|1810026B05Rik|69170|RIKEN cDNA 1810026B05 gene
mm9_v1_chr8_+_46744023_46744252	1.73969	NHLH1,2.p2	AK079130|Sorbs2|234214|sorbin and SH3 domain containing 2	AK140498|Sorbs2|234214|sorbin and SH3 domain containing 2	AK050951|Sorbs2|234214|sorbin and SH3 domain containing 2	BC039163|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr19_-_6235784_6235886	1.73299	NHLH1,2.p2	AK171041|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK155872|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK171178|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	NM_198168|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK034167|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform	AK171430|Ppp2r5b|225849|protein phosphatase 2, regulatory subunit B (B56), beta isoform
mm9_v1_chr5_+_114185777_114185845	1.72858	NHLH1,2.p2	NM_001010825|Ficd|231630|FIC domain containing	AK087477|Ficd|231630|FIC domain containing	BC106090|Ficd|231630|FIC domain containing
mm9_v1_chr5_+_43625165_43625181	1.72551	NHLH1,2.p2	AK164866|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2
mm9_v1_chr15_+_30102306_30102347	1.72111	NHLH1,2.p2	NM_008729|Ctnnd2|18163|catenin (cadherin associated protein), delta 2	U90331|Ctnnd2|18163|catenin (cadherin associated protein), delta 2
mm9_v1_chr2_-_75776467_75776587	1.71814	NHLH1,2.p2	AK147134|Ttc30b|72421|tetratricopeptide repeat domain 30B	AK011097|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151060|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151184|Ttc30b|72421|tetratricopeptide repeat domain 30B	NM_028235|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC157929|Ttc30b|72421|tetratricopeptide repeat domain 30B
mm9_v1_chr13_+_118391270_118391304	1.71558	NHLH1,2.p2	AJ225123|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr3_+_13471643_13471656	1.70389	NHLH1,2.p2	NM_001163328|Ralyl|76897|RALY RNA binding protein-like	NM_178631|Ralyl|76897|RALY RNA binding protein-like
mm9_v1_chr15_-_90509751_90509818	1.70144	NHLH1,2.p2	AK005311|Cpne8|66871|copine VIII	BC076564|Cpne8|66871|copine VIII	BC017626|Cpne8|66871|copine VIII	AK013407|Cpne8|66871|copine VIII	AK004559|Cpne8|66871|copine VIII	BC138745|Cpne8|66871|copine VIII	BC138746|Cpne8|66871|copine VIII	AK010227|Cpne8|66871|copine VIII	BC048551|Cpne8|66871|copine VIII	NM_001033851|Cpne8|66871|copine VIII	NM_025815|Cpne8|66871|copine VIII
mm9_v1_chr17_-_25974021_25974145	1.69649	NHLH1,2.p2	BC021549|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	NM_144816|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)	AK140428|Rhbdl1|214951|rhomboid, veinlet-like 1 (Drosophila)
mm9_v1_chr1_+_87942437_87942543	1.68835	NHLH1,2.p2	BC137675|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	BC144821|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	NM_001144992|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene	NM_001144993|2810459M11Rik|72792|RIKEN cDNA 2810459M11 gene
mm9_v1_chr17_-_65962616_65962686	1.67394	NHLH1,2.p2	AF115503|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK012357|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr19_+_47089736_47089849	1.66737	NHLH1,2.p2	AK144917|Ina|226180|internexin neuronal intermediate filament protein, alpha
mm9_v1_chr11_-_30168142_30168145	1.66678	NHLH1,2.p2	BC092544|Spnb2|20742|spectrin beta 2
mm9_v1_chr15_+_74394184_74394274	1.66389	NHLH1,2.p2	AK046831|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr9_+_122026378_122026421	1.65797	NHLH1,2.p2	NM_001164572|Snrk|20623|SNF related kinase	NM_133741|Snrk|20623|SNF related kinase
mm9_v1_chr11_-_5052224_5052235	1.65755	NHLH1,2.p2	AJ416093|Emid1|140703|EMI domain containing 1	BC130023|Emid1|140703|EMI domain containing 1	NM_080595|Emid1|140703|EMI domain containing 1
mm9_v1_chr17_-_45732442_45732540	1.65247	NHLH1,2.p2	AK218485|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK180131|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK180168|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK183203|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK191284|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK197634|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK200370|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK205425|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK205461|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK206588|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK149483|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK170463|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1	AK004756|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr2_-_30214724_30214844	1.64667	NHLH1,2.p2	AF426314|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC024477|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	NM_139302|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK155248|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152409|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK152502|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	EF676083|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	AK167762|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2	BC028859|Sh3glb2|227700|SH3-domain GRB2-like endophilin B2
mm9_v1_chr17_+_81343933_81344010	1.64478	NHLH1,2.p2	AK013110|Tmem178|68027|transmembrane protein 178	AK014196|Tmem178|68027|transmembrane protein 178	NM_026516|Tmem178|68027|transmembrane protein 178
mm9_v1_chr8_-_86781160_86781224	1.6403	NHLH1,2.p2	AK144807|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	AK007709|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	BC025049|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	AK010538|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	AK013882|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	AK164894|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	AK164635|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	NM_026423|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)	AK047287|Mri1|67873|methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)
mm9_v1_chr8_+_122638031_122638087	1.6394	NHLH1,2.p2	AK032447|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK046401|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK051096|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_001163761|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_001163762|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	NM_172286|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK133157|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK172108|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene	AK122299|6430548M08Rik|234797|RIKEN cDNA 6430548M08 gene
mm9_v1_chr12_+_87165987_87166024	1.63367	NHLH1,2.p2	BC035276|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr19_+_47253626_47253646	1.62227	NHLH1,2.p2	AK010787|Neurl1a|18011|neuralized homolog 1A (Drosophila)
mm9_v1_chr8_+_72839642_72839751	1.62038	NHLH1,2.p2	AK053885|Lass1|93898|LAG1 homolog, ceramide synthase 1	NM_001163282|Gdf1|14559|growth differentiation factor 1	NM_138647|Lass1|93898|LAG1 homolog, ceramide synthase 1	M62301|Gdf1|14559|growth differentiation factor 1	AK162823|Gdf1|14559|growth differentiation factor 1	BC056973|Gdf1|14559|growth differentiation factor 1	BC094351|Gdf1|14559|growth differentiation factor 1	BC132318|Lass1|93898|LAG1 homolog, ceramide synthase 1
mm9_v1_chr16_-_44139087_44139164	1.61937	NHLH1,2.p2	AK140873|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	BC038392|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK150742|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK166857|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK149833|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK153403|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK154869|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK160792|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	AK170721|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A	NM_007508|Atp6v1a|11964|ATPase, H+ transporting, lysosomal V1 subunit A
mm9_v1_chr18_+_43367236_43367350	1.61916	NHLH1,2.p2	AK042599|Stk32a|269019|serine/threonine kinase 32A	BC055002|Stk32a|269019|serine/threonine kinase 32A	AK044474|Stk32a|269019|serine/threonine kinase 32A	AK036266|Stk32a|269019|serine/threonine kinase 32A	NM_178749|Stk32a|269019|serine/threonine kinase 32A
mm9_v1_chr1_+_185858324_185858355	1.61859	NHLH1,2.p2	BC025066|Dusp10|63953|dual specificity phosphatase 10	AB037908|Dusp10|63953|dual specificity phosphatase 10	AK142568|Dusp10|63953|dual specificity phosphatase 10	AK088186|Dusp10|63953|dual specificity phosphatase 10	NM_022019|Dusp10|63953|dual specificity phosphatase 10	AK035293|Dusp10|63953|dual specificity phosphatase 10	AK050528|Dusp10|63953|dual specificity phosphatase 10	AK088357|Dusp10|63953|dual specificity phosphatase 10	AK088024|Dusp10|63953|dual specificity phosphatase 10	AK011995|Dusp10|63953|dual specificity phosphatase 10
mm9_v1_chr6_-_8728094_8728149	1.61769	NHLH1,2.p2	BC002030|Ica1|15893|islet cell autoantigen 1	AK192988|Ica1|15893|islet cell autoantigen 1	U26459|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr2_-_113057218_113057234	1.61597	NHLH1,2.p2	AK082701|Ryr3|20192|ryanodine receptor 3	D84237|Ryr3|20192|ryanodine receptor 3
mm9_v1_chr6_+_113232319_113232420	1.61557	NHLH1,2.p2	AK047431|Cpne9|211232|copine family member IX	BC115728|Cpne9|211232|copine family member IX	AK047571|Cpne9|211232|copine family member IX	AK044080|Cpne9|211232|copine family member IX
mm9_v1_chr3_+_137530638_137530776	1.61457	NHLH1,2.p2	NM_001033155|Dnajb14|70604|DnaJ (Hsp40) homolog, subfamily B, member 14	AK017735|Dnajb14|70604|DnaJ (Hsp40) homolog, subfamily B, member 14
mm9_v1_chr10_-_67011689_67011747	1.60641	NHLH1,2.p2	BC057106|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	BC058407|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	AK155334|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase	NM_001005419|Ado|211488|2-aminoethanethiol (cysteamine) dioxygenase
mm9_v1_chr10_-_30522716_30522747	1.59732	NHLH1,2.p2	AK144324|Ncoa7|211329|nuclear receptor coactivator 7
mm9_v1_chr10_-_77432541_77432616	1.59271	NHLH1,2.p2	AK039405|Trpm2|28240|transient receptor potential cation channel, subfamily M, member 2	AB166747|Trpm2|28240|transient receptor potential cation channel, subfamily M, member 2	NM_138301|Trpm2|28240|transient receptor potential cation channel, subfamily M, member 2
mm9_v1_chr1_-_157883515_157883643	1.59257	NHLH1,2.p2	AK149727|Tor1aip1|208263|torsin A interacting protein 1	AB251963|Tor1aip1|208263|torsin A interacting protein 1	NM_001160018|Tor1aip1|208263|torsin A interacting protein 1	NM_144791|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr7_+_86418127_86418181	1.58852	NHLH1,2.p2	AK008690|Abhd2|54608|abhydrolase domain containing 2	AK053460|Abhd2|54608|abhydrolase domain containing 2	AK139526|Abhd2|54608|abhydrolase domain containing 2	NM_018811|Abhd2|54608|abhydrolase domain containing 2	AF546701|Abhd2|54608|abhydrolase domain containing 2	BC089477|Abhd2|54608|abhydrolase domain containing 2	AF201730|Abhd2|54608|abhydrolase domain containing 2	BC027098|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr1_-_94998418_94998474	1.58544	NHLH1,2.p2	BC045161|Kif1a|16560|kinesin family member 1A	BC054538|Kif1a|16560|kinesin family member 1A	BC062891|Kif1a|16560|kinesin family member 1A	NM_001110315|Kif1a|16560|kinesin family member 1A	NM_008440|Kif1a|16560|kinesin family member 1A
mm9_v1_chr11_+_31770920_31770944	1.57559	NHLH1,2.p2	AK173229|Cpeb4|67579|cytoplasmic polyadenylation element binding protein 4
mm9_v1_chr4_-_49858561_49858640	1.57206	NHLH1,2.p2	AK162603|Grin3a|242443|glutamate receptor ionotropic, NMDA3A	AK044171|Grin3a|242443|glutamate receptor ionotropic, NMDA3A	AK138366|Grin3a|242443|glutamate receptor ionotropic, NMDA3A
mm9_v1_chr12_-_113146259_113146309	1.5686	NHLH1,2.p2	BC054788|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B	NM_011625|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B	BC053092|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B	AK148849|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B
mm9_v1_chr7_-_20281956_20282388	1.56096	NHLH1,2.p2	
mm9_v1_chr18_+_36508277_36508452	1.54535	NHLH1,2.p2	NM_001081365|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	BC028765|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK167679|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK002512|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK028217|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene	AK089711|0610010O12Rik|66060|RIKEN cDNA 0610010O12 gene
mm9_v1_chr4_+_97444450_97444485	1.54509	NHLH1,2.p2	AK054310|Nfia|18027|nuclear factor I/A	AK137731|Nfia|18027|nuclear factor I/A
mm9_v1_chr3_-_89153857_89153933	1.53962	NHLH1,2.p2	AK151804|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK152725|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK152954|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK152973|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	BC009132|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK020649|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AF006196|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	BC057909|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK170101|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK149796|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK039384|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK142520|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK170365|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK149684|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	AK048901|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	NM_001037722|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)	NM_009614|Adam15|11490|a disintegrin and metallopeptidase domain 15 (metargidin)
mm9_v1_chr1_+_138027943_138028013	1.53801	NHLH1,2.p2	NM_001039472|Kif21b|16565|kinesin family member 21B
mm9_v1_chr3_+_125106995_125107008	1.53011	NHLH1,2.p2	AF520870|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	AK140992|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	NM_022565|Ndst4|64580|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm9_v1_chr15_+_74551611_74551685	1.52289	NHLH1,2.p2	BC047266|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene	NM_198607|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene
mm9_v1_chr3_+_27081918_27081998	1.51982	NHLH1,2.p2	AK128968|Nceh1|320024|arylacetamide deacetylase-like 1	AK038691|Nceh1|320024|arylacetamide deacetylase-like 1	AK045363|Nceh1|320024|arylacetamide deacetylase-like 1	AK085767|Nceh1|320024|arylacetamide deacetylase-like 1	NM_178772|Nceh1|320024|arylacetamide deacetylase-like 1	AK135837|Nceh1|320024|arylacetamide deacetylase-like 1	BC082569|Nceh1|320024|arylacetamide deacetylase-like 1	AK173158|Nceh1|320024|arylacetamide deacetylase-like 1	AK034339|Nceh1|320024|arylacetamide deacetylase-like 1
mm9_v1_chr7_+_53152425_53152567	1.51876	NHLH1,2.p2	NM_144801|Tmem143|70209|transmembrane protein 143	BC017618|Tmem143|70209|transmembrane protein 143	AK035836|Tmem143|70209|transmembrane protein 143	AK010209|Tmem143|70209|transmembrane protein 143	AK171908|Tmem143|70209|transmembrane protein 143	AK087636|Tmem143|70209|transmembrane protein 143
mm9_v1_chr9_-_35365985_35366129	1.51659	NHLH1,2.p2	AF142630|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC024852|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	BC061130|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK078340|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	AK050693|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	NM_013932|Ddx25|30959|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm9_v1_chr4_-_134260127_134260247	1.5162	NHLH1,2.p2	AK144486|Man1c1|230815|mannosidase, alpha, class 1C, member 1	BC067023|Man1c1|230815|mannosidase, alpha, class 1C, member 1	NM_207237|Man1c1|230815|mannosidase, alpha, class 1C, member 1
mm9_v1_chr4_-_25726753_25727001	1.51495	NHLH1,2.p2	AB015426|Fut9|14348|fucosyltransferase 9	BC116874|Fut9|14348|fucosyltransferase 9	BC116876|Fut9|14348|fucosyltransferase 9	AK047650|Fut9|14348|fucosyltransferase 9	AK163871|Fut9|14348|fucosyltransferase 9	AK036183|Fut9|14348|fucosyltransferase 9	AK043410|Fut9|14348|fucosyltransferase 9	AK049167|Fut9|14348|fucosyltransferase 9
mm9_v1_chr15_+_22966203_22966220	1.51221	NHLH1,2.p2	AK082311|Cdh18|320865|cadherin 18	AK137430|Cdh18|320865|cadherin 18	NM_001081299|Cdh18|320865|cadherin 18
mm9_v1_chr1_+_7079000_7079035	1.5091	NHLH1,2.p2	NM_183028|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr5_+_134575561_134575653	1.50772	NHLH1,2.p2	AJ296173|Gatsl2|80909|GATS protein-like 2	AK039122|Gatsl2|80909|GATS protein-like 2	BC094613|Gatsl2|80909|GATS protein-like 2	NM_030719|Gatsl2|80909|GATS protein-like 2	AK052217|Gatsl2|80909|GATS protein-like 2
mm9_v1_chr12_+_117519658_117519785	1.50688	NHLH1,2.p2	AK044360|Esyt2|52635|extended synaptotagmin-like protein 2	NM_028731|Esyt2|52635|extended synaptotagmin-like protein 2	AK014813|Esyt2|52635|extended synaptotagmin-like protein 2	AK157352|Esyt2|52635|extended synaptotagmin-like protein 2	BC138937|Esyt2|52635|extended synaptotagmin-like protein 2
mm9_v1_chr2_-_38142866_38142913	1.50533	NHLH1,2.p2	BC027786|Dennd1a|227801|DENN/MADD domain containing 1A	AK137530|Dennd1a|227801|DENN/MADD domain containing 1A	BC023016|Dennd1a|227801|DENN/MADD domain containing 1A	NM_146122|Dennd1a|227801|DENN/MADD domain containing 1A
mm9_v1_chr11_+_97223739_97223783	1.49749	NHLH1,2.p2	AK147580|Socs7|192157|suppressor of cytokine signaling 7	AK147650|Socs7|192157|suppressor of cytokine signaling 7
mm9_v1_chr10_-_61693963_61693977	1.49299	NHLH1,2.p2	AK012471|Tspan15|70423|tetraspanin 15	NM_197996|Tspan15|70423|tetraspanin 15	AK172169|Tspan15|70423|tetraspanin 15
mm9_v1_chr12_-_73509925_73510040	1.48938	NHLH1,2.p2	NM_153457|Rtn1|104001|reticulon 1	AK132364|Rtn1|104001|reticulon 1
mm9_v1_chr15_-_101966611_101966682	1.48853	NHLH1,2.p2	BC048820|Spryd3|223918|SPRY domain containing 3	NM_001033277|Spryd3|223918|SPRY domain containing 3	AK146689|Spryd3|223918|SPRY domain containing 3
mm9_v1_chr2_+_124436031_124436031	1.4767	NHLH1,2.p2	AB091532|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_172537|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199238|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199239|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199240|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	NM_199241|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr10_-_105011439_105011534	1.47498	NHLH1,2.p2	BC092226|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK052344|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	AK135552|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2	NM_177368|Tmtc2|278279|transmembrane and tetratricopeptide repeat containing 2
mm9_v1_chr12_+_79327630_79327650	1.4734	NHLH1,2.p2	AK144569|Gphn|268566|gephyrin	NM_145965|Gphn|268566|gephyrin	NM_172952|Gphn|268566|gephyrin
mm9_v1_chr2_+_21289168_21289199	1.47202	NHLH1,2.p2	AK083234|Gpr158|241263|G protein-coupled receptor 158	AK086256|Gpr158|241263|G protein-coupled receptor 158	NM_001004761|Gpr158|241263|G protein-coupled receptor 158	AK030530|Gpr158|241263|G protein-coupled receptor 158
mm9_v1_chr7_-_31912022_31912061	1.47186	NHLH1,2.p2	BC039140|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr7_+_99890204_99890223	1.46383	NHLH1,2.p2	AK142206|Rab30|75985|RAB30, member RAS oncogene family	BC017550|Rab30|75985|RAB30, member RAS oncogene family	NM_029494|Rab30|75985|RAB30, member RAS oncogene family
mm9_v1_chr10_-_59414516_59414582	1.4615	NHLH1,2.p2	BC131992|Ddit4|74747|DNA-damage-inducible transcript 4	BC132645|Ddit4|74747|DNA-damage-inducible transcript 4	BC145370|Ddit4|74747|DNA-damage-inducible transcript 4	AK017926|Ddit4|74747|DNA-damage-inducible transcript 4	NM_029083|Ddit4|74747|DNA-damage-inducible transcript 4	AK081046|Ddit4|74747|DNA-damage-inducible transcript 4
mm9_v1_chr15_-_38944199_38944296	1.46063	NHLH1,2.p2	AK172597|Slc25a32|69906|solute carrier family 25, member 32	AK145178|Slc25a32|69906|solute carrier family 25, member 32	AK172029|Slc25a32|69906|solute carrier family 25, member 32	AK170643|Slc25a32|69906|solute carrier family 25, member 32	NM_172402|Slc25a32|69906|solute carrier family 25, member 32
mm9_v1_chr11_-_95375878_95375924	1.45876	NHLH1,2.p2	AK158760|Nxph3|104079|neurexophilin 3	NM_130858|Nxph3|104079|neurexophilin 3
mm9_v1_chr10_-_18463500_18463563	1.45376	NHLH1,2.p2	AK165602|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK148343|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147963|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147679|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	NM_001033258|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed
mm9_v1_chr16_-_31948214_31948358	1.45344	NHLH1,2.p2	
mm9_v1_chr6_-_5248235_5248333	1.45265	NHLH1,2.p2	BC037140|Pon2|330260|paraoxonase 2	L48514|Pon2|330260|paraoxonase 2	AK152351|Pon2|330260|paraoxonase 2	AK171926|Pon2|330260|paraoxonase 2	BC021887|Pon2|330260|paraoxonase 2
mm9_v1_chr2_-_26244834_26244836	1.45017	NHLH1,2.p2	NM_001085407|Sdccag3|68112|serologically defined colon cancer antigen 3	NM_001085408|Sdccag3|68112|serologically defined colon cancer antigen 3	NM_026563|Sdccag3|68112|serologically defined colon cancer antigen 3
mm9_v1_chr1_+_171585621_171585677	1.44913	NHLH1,2.p2	AK004165|Rgs5|19737|regulator of G-protein signaling 5	AK028765|Rgs5|19737|regulator of G-protein signaling 5	AK030300|Rgs5|19737|regulator of G-protein signaling 5	AK044096|Rgs5|19737|regulator of G-protein signaling 5	AK054098|Rgs5|19737|regulator of G-protein signaling 5	NM_009063|Rgs5|19737|regulator of G-protein signaling 5	BC037683|Rgs5|19737|regulator of G-protein signaling 5	U67188|Rgs5|19737|regulator of G-protein signaling 5
mm9_v1_chr2_+_25258568_25258631	1.44859	NHLH1,2.p2	BC003320|Npdc1|18146|neural proliferation, differentiation and control gene 1	NM_008721|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr19_+_6497834_6497837	1.44759	NHLH1,2.p2	
mm9_v1_chr18_-_43058544_43058664	1.44422	NHLH1,2.p2	AK039592|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	BC088979|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	NM_027531|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK018119|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr17_+_5492538_5492652	1.44418	NHLH1,2.p2	BC059814|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK080845|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK036699|Zdhhc14|224454|zinc finger, DHHC domain containing 14	NM_146073|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK041648|Zdhhc14|224454|zinc finger, DHHC domain containing 14	AK046719|Zdhhc14|224454|zinc finger, DHHC domain containing 14
mm9_v1_chr11_-_118770859_118770872	1.4355	NHLH1,2.p2	AK049926|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK160816|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	AK086669|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr10_+_28867072_28867100	1.43315	NHLH1,2.p2	AK044134|6330407J23Rik|67412|RIKEN cDNA 6330407J23 gene
mm9_v1_chr4_+_139179011_139179044	1.43044	NHLH1,2.p2	AK044712|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1	BC039281|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chrX_-_154481041_154481154	1.42849	NHLH1,2.p2	BC043093|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	BC060716|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	NM_177751|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK122399|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2	AK141544|Cnksr2|245684|connector enhancer of kinase suppressor of Ras 2
mm9_v1_chr3_+_117278144_117278545	1.42812	NHLH1,2.p2	AK032034|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK082692|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	BC031879|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK076176|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	NM_029425|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK014763|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene	AK043629|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene
mm9_v1_chr6_-_53770406_53770488	1.42436	NHLH1,2.p2	AK122338|Tril|66873|TLR4 interactor with leucine-rich repeats	AK033401|Tril|66873|TLR4 interactor with leucine-rich repeats	AK004681|Tril|66873|TLR4 interactor with leucine-rich repeats
mm9_v1_chr5_-_77837037_77837125	1.42412	NHLH1,2.p2	L75822|Igfbp7|29817|insulin-like growth factor binding protein 7	AK002277|Igfbp7|29817|insulin-like growth factor binding protein 7	AK148749|Igfbp7|29817|insulin-like growth factor binding protein 7	BC092538|Igfbp7|29817|insulin-like growth factor binding protein 7	AK156315|Igfbp7|29817|insulin-like growth factor binding protein 7	AB012886|Igfbp7|29817|insulin-like growth factor binding protein 7	NM_001159518|Igfbp7|29817|insulin-like growth factor binding protein 7	NM_008048|Igfbp7|29817|insulin-like growth factor binding protein 7
mm9_v1_chr19_+_23215704_23215723	1.42254	NHLH1,2.p2	AK028544|Klf9|16601|Kruppel-like factor 9	NM_010638|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr2_-_32702610_32702727	1.42173	NHLH1,2.p2	AF326545|Stxbp1|20910|syntaxin binding protein 1	AF326563|Stxbp1|20910|syntaxin binding protein 1	D45903|Stxbp1|20910|syntaxin binding protein 1	BC031728|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr7_-_117987922_117987942	1.42069	NHLH1,2.p2	AK006791|Rnf141|67150|ring finger protein 141
mm9_v1_chr12_-_101963226_101963268	1.41968	NHLH1,2.p2	AY341873|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	AY341881|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	BC035298|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5	NM_153587|Rps6ka5|73086|ribosomal protein S6 kinase, polypeptide 5
mm9_v1_chr12_+_8928820_8928943	1.41856	NHLH1,2.p2	AK165638|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	AK088958|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	AK075699|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	BC089021|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	EF437361|Laptm4a|17775|lysosomal-associated protein transmembrane 4A	BC086667|Laptm4a|17775|lysosomal-associated protein transmembrane 4A
mm9_v1_chr2_+_25258653_25258768	1.41758	NHLH1,2.p2	AK146466|Npdc1|18146|neural proliferation, differentiation and control gene 1	L03814|Npdc1|18146|neural proliferation, differentiation and control gene 1	X67209|Npdc1|18146|neural proliferation, differentiation and control gene 1
mm9_v1_chr4_-_128798939_128798983	1.41567	NHLH1,2.p2	NM_001130419|Hpca|15444|hippocalcin
mm9_v1_chr1_+_134776927_134777014	1.41241	NHLH1,2.p2	AK036271|Lrrn2|16980|leucine rich repeat protein 2, neuronal	AK039216|Lrrn2|16980|leucine rich repeat protein 2, neuronal	NM_010732|Lrrn2|16980|leucine rich repeat protein 2, neuronal
mm9_v1_chr9_-_95650735_95650795	1.41226	NHLH1,2.p2	BC137581|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	BC144726|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	NM_011643|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U73625|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95167|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95168|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	U95169|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1	AK038676|Trpc1|22063|transient receptor potential cation channel, subfamily C, member 1
mm9_v1_chr5_+_109058788_109058836	1.4044	NHLH1,2.p2	AK049952|Tmem175|72392|transmembrane protein 175	NM_001163531|Tmem175|72392|transmembrane protein 175	NM_001163532|Tmem175|72392|transmembrane protein 175	NM_028223|Tmem175|72392|transmembrane protein 175
mm9_v1_chr7_-_52230117_52230178	1.40058	NHLH1,2.p2	AF320000|Cpt1c|78070|carnitine palmitoyltransferase 1c	NM_153679|Cpt1c|78070|carnitine palmitoyltransferase 1c	BC066155|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr6_+_77192615_77192722	1.39947	NHLH1,2.p2	AK080836|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	NM_028880|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK014545|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK053345|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr1_-_94998392_94998412	1.39938	NHLH1,2.p2	AK138237|Kif1a|16560|kinesin family member 1A	BC034863|Kif1a|16560|kinesin family member 1A	D29951|Kif1a|16560|kinesin family member 1A	AK147640|Kif1a|16560|kinesin family member 1A
mm9_v1_chr13_+_93195850_93196061	1.39454	NHLH1,2.p2	AK078203|Ankrd34b|218440|ankyrin repeat domain 34B	AK090387|Ankrd34b|218440|ankyrin repeat domain 34B	NM_175455|Ankrd34b|218440|ankyrin repeat domain 34B	BC096609|Ankrd34b|218440|ankyrin repeat domain 34B	BC119312|Ankrd34b|218440|ankyrin repeat domain 34B	BC119314|Ankrd34b|218440|ankyrin repeat domain 34B
mm9_v1_chr3_-_97692613_97692634	1.39433	NHLH1,2.p2	BC028274|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC141185|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	BC145504|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001039376|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr19_+_3323339_3323356	1.39108	NHLH1,2.p2	AK133472|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	AK147770|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	AK077454|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	AK136487|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	AK128925|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	AK149688|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver
mm9_v1_chr12_+_81744869_81744959	1.39098	NHLH1,2.p2	BC058649|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr4_-_86876311_86876327	1.38624	NHLH1,2.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr8_+_3587675_3587681	1.38556	NHLH1,2.p2	AK081728|2310057J16Rik|69697|RIKEN cDNA 2310057J16 gene
mm9_v1_chr4_+_104829963_104829965	1.38518	NHLH1,2.p2	BC005558|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr4_+_53453277_53453295	1.38397	NHLH1,2.p2	AK077951|Slc44a1|100434|solute carrier family 44, member 1	NM_001159633|Slc44a1|100434|solute carrier family 44, member 1	NM_133891|Slc44a1|100434|solute carrier family 44, member 1
mm9_v1_chr4_+_97444326_97444386	1.38262	NHLH1,2.p2	BC075702|Nfia|18027|nuclear factor I/A	D90172|Nfia|18027|nuclear factor I/A
mm9_v1_chrX_-_101396356_101396482	1.38262	NHLH1,2.p2	AK220439|C77370|245555|expressed sequence C77370	DQ975302|C77370|245555|expressed sequence C77370	DQ975303|C77370|245555|expressed sequence C77370	NM_001077354|C77370|245555|expressed sequence C77370	AK038635|C77370|245555|expressed sequence C77370
mm9_v1_chr1_-_132612309_132612397	1.38247	NHLH1,2.p2	X98847|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC051014|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	BC018418|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	AK146744|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	NM_008825|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm9_v1_chr11_-_103815317_103815332	1.38182	NHLH1,2.p2	AK085086|Nsf|18195|N-ethylmaleimide sensitive fusion protein	U10120|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr18_-_61560053_61560099	1.37579	NHLH1,2.p2	AK028464|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	BC150699|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AK086111|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	AF453324|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	NM_133249|Ppargc1b|170826|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm9_v1_chr15_-_57723937_57723989	1.3733	NHLH1,2.p2	AK152901|Derl1|67819|Der1-like domain family, member 1	AK148018|Derl1|67819|Der1-like domain family, member 1	AK152197|Derl1|67819|Der1-like domain family, member 1	AK043420|Derl1|67819|Der1-like domain family, member 1	NM_024207|Derl1|67819|Der1-like domain family, member 1	AK007435|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr17_-_25073888_25073894	1.37178	NHLH1,2.p2	AK163208|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr9_-_21722533_21722626	1.37135	NHLH1,2.p2	BC010779|Rab3d|19340|RAB3D, member RAS oncogene family	AF263365|Rab3d|19340|RAB3D, member RAS oncogene family	AK078462|Rab3d|19340|RAB3D, member RAS oncogene family	AK169369|Rab3d|19340|RAB3D, member RAS oncogene family	NM_031874|Rab3d|19340|RAB3D, member RAS oncogene family	BC020010|Rab3d|19340|RAB3D, member RAS oncogene family	AK048395|Rab3d|19340|RAB3D, member RAS oncogene family
mm9_v1_chr9_-_83699706_83699913	1.36751	NHLH1,2.p2	AF277093|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK029065|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	BC037030|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_001145974|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	AK030666|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	NM_148941|Elovl4|83603|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4
mm9_v1_chr16_-_35769389_35769480	1.364	NHLH1,2.p2	BC037460|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK034214|Dirc2|224132|disrupted in renal carcinoma 2 (human)	NM_153550|Dirc2|224132|disrupted in renal carcinoma 2 (human)	AK172331|Dirc2|224132|disrupted in renal carcinoma 2 (human)
mm9_v1_chr17_-_45730551_45730602	1.36059	NHLH1,2.p2	BC004828|Slc29a1|63959|solute carrier family 29 (nucleoside transporters), member 1
mm9_v1_chr2_+_32442585_32442614	1.35961	NHLH1,2.p2	AJ007310|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK085730|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK144884|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK155956|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK159712|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK161559|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK007601|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm9_v1_chr17_-_25073798_25073887	1.35835	NHLH1,2.p2	AB043123|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB043124|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB043125|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AF178636|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	BC060603|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3	AB093282|Mapk8ip3|30957|mitogen-activated protein kinase 8 interacting protein 3
mm9_v1_chr18_+_82753560_82753917	1.35319	NHLH1,2.p2	AK205832|Mbp|17196|myelin basic protein	AK195683|Mbp|17196|myelin basic protein	AK198099|Mbp|17196|myelin basic protein
mm9_v1_chr13_-_91881231_91881476	1.35208	NHLH1,2.p2	AK135005|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK162854|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK161222|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK162063|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene	AK048302|4833422C13Rik|373852|RIKEN cDNA 4833422C13 gene
mm9_v1_chr14_+_45839391_45839393	1.35147	NHLH1,2.p2	AK082691|Gpr137c|70713|G protein-coupled receptor 137C	NM_027518|Gpr137c|70713|G protein-coupled receptor 137C	AK018183|Gpr137c|70713|G protein-coupled receptor 137C
mm9_v1_chr6_-_56312170_56312512	1.34889	NHLH1,2.p2	AK082497|Pde1c|18575|phosphodiesterase 1C	BC032277|Pde1c|18575|phosphodiesterase 1C	AK139923|Pde1c|18575|phosphodiesterase 1C	AK017183|Pde1c|18575|phosphodiesterase 1C	AK082180|Pde1c|18575|phosphodiesterase 1C	AK030423|Pde1c|18575|phosphodiesterase 1C	NM_001025568|Pde1c|18575|phosphodiesterase 1C	NM_001159952|Pde1c|18575|phosphodiesterase 1C	NM_001159953|Pde1c|18575|phosphodiesterase 1C	L76946|Pde1c|18575|phosphodiesterase 1C	NM_011054|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr10_+_79167197_79167254	1.34785	NHLH1,2.p2	AY089967|Bsg|12215|basigin	AK002332|Bsg|12215|basigin	AK011364|Bsg|12215|basigin	AK147225|Bsg|12215|basigin	D00611|Bsg|12215|basigin	S63813|Bsg|12215|basigin	Y16256|Bsg|12215|basigin
mm9_v1_chr12_+_78339999_78340029	1.33821	NHLH1,2.p2	AK048520|Fut8|53618|fucosyltransferase 8	NM_016893|Fut8|53618|fucosyltransferase 8	AK163494|Fut8|53618|fucosyltransferase 8
mm9_v1_chr5_-_121038602_121038704	1.33793	NHLH1,2.p2	AK037856|Tpcn1|252972|two pore channel 1	AK077411|Tpcn1|252972|two pore channel 1	BC058951|Tpcn1|252972|two pore channel 1	NM_145853|Tpcn1|252972|two pore channel 1	AF217002|Tpcn1|252972|two pore channel 1	AK148129|Tpcn1|252972|two pore channel 1
mm9_v1_chr1_+_59820243_59820338	1.33556	NHLH1,2.p2	AK149385|Bmpr2|12168|bone morphogenic protein receptor, type II (serine/threonine kinase)
mm9_v1_chr16_-_22439642_22439745	1.32853	NHLH1,2.p2	BC034680|Etv5|104156|ets variant gene 5	NM_023794|Etv5|104156|ets variant gene 5	AK031452|Etv5|104156|ets variant gene 5	AK168881|Etv5|104156|ets variant gene 5	AK049234|Etv5|104156|ets variant gene 5	AK164091|Etv5|104156|ets variant gene 5	AK018368|Etv5|104156|ets variant gene 5
mm9_v1_chr10_-_76880955_76880972	1.32623	NHLH1,2.p2	BC051107|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403106|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403107|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403108|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF403109|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AF525421|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AY162454|Adarb1|110532|adenosine deaminase, RNA-specific, B1	BC062806|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr18_-_9449954_9450034	1.3218	NHLH1,2.p2	BC035524|Ccny|67974|cyclin Y	AK017493|Ccny|67974|cyclin Y	AK006341|Ccny|67974|cyclin Y
mm9_v1_chr9_-_106588220_106588290	1.31916	NHLH1,2.p2	BC006608|Tex264|21767|testis expressed gene 264	AK003113|Tex264|21767|testis expressed gene 264	AK159046|Tex264|21767|testis expressed gene 264	NM_001081654|Tex264|21767|testis expressed gene 264
mm9_v1_chr4_+_107838038_107838132	1.31882	NHLH1,2.p2	AK153878|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK166388|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	NM_026728|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK011365|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	BC025104|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK005030|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2	AK166965|Echdc2|52430|enoyl Coenzyme A hydratase domain containing 2
mm9_v1_chr16_+_6349108_6349144	1.31627	NHLH1,2.p2	AK134833|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr7_-_134164627_134164726	1.31536	NHLH1,2.p2	NM_001102563|Prrt2|69017|proline-rich transmembrane protein 2
mm9_v1_chr7_+_86418082_86418112	1.31516	NHLH1,2.p2	AK153642|Abhd2|54608|abhydrolase domain containing 2
mm9_v1_chr18_-_36675458_36675463	1.31337	NHLH1,2.p2	AK164309|Hbegf|15200|heparin-binding EGF-like growth factor	NM_010415|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr6_+_121160693_121160835	1.31273	NHLH1,2.p2	AJ245923|Tuba8|53857|tubulin, alpha 8	NM_017379|Tuba8|53857|tubulin, alpha 8	BC017631|Tuba8|53857|tubulin, alpha 8	AK032157|Tuba8|53857|tubulin, alpha 8	GU591980|Tuba8|53857|tubulin, alpha 8
mm9_v1_chr9_+_45820886_45820906	1.30944	NHLH1,2.p2	NM_027498|Sik3|70661|SIK family kinase 3
mm9_v1_chr11_+_30785357_30785392	1.305	NHLH1,2.p2	AK141614|Gpr75|237716|G protein-coupled receptor 75
mm9_v1_chr1_+_138028025_138028071	1.305	NHLH1,2.p2	AK089400|Kif21b|16565|kinesin family member 21B
mm9_v1_chr3_-_127540408_127540409	1.3009	NHLH1,2.p2	NM_145964|Ap1ar|211556|adaptor-related protein complex 1 associated regulatory protein
mm9_v1_chr5_+_145306751_145306864	1.30071	NHLH1,2.p2	AK134806|Nptx2|53324|neuronal pentraxin 2	NM_016789|Nptx2|53324|neuronal pentraxin 2	BC026054|Nptx2|53324|neuronal pentraxin 2	AF049124|Nptx2|53324|neuronal pentraxin 2
mm9_v1_chr17_+_35068258_35068328	1.3002	NHLH1,2.p2	AK077444|Neu1|18010|neuraminidase 1	AK145680|Neu1|18010|neuraminidase 1	Y11412|Neu1|18010|neuraminidase 1	U93702|Neu1|18010|neuraminidase 1	BC004666|Neu1|18010|neuraminidase 1
mm9_v1_chr5_+_98683202_98683430	1.29871	NHLH1,2.p2	AK028894|Fgf5|14176|fibroblast growth factor 5	NM_010203|Fgf5|14176|fibroblast growth factor 5	BC071227|Fgf5|14176|fibroblast growth factor 5	AK028694|Fgf5|14176|fibroblast growth factor 5	AB016516|Fgf5|14176|fibroblast growth factor 5	M30643|Fgf5|14176|fibroblast growth factor 5
mm9_v1_chr3_-_58495986_58496041	1.29677	NHLH1,2.p2	Z19581|Siah2|20439|seven in absentia 2
mm9_v1_chr14_-_65716932_65716942	1.2966	NHLH1,2.p2	NM_018788|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr1_+_95582188_95582371	1.29469	NHLH1,2.p2	AK156243|Bok|51800|BCL2-related ovarian killer protein	NM_016778|Bok|51800|BCL2-related ovarian killer protein	AF027707|Bok|51800|BCL2-related ovarian killer protein	AK171258|Bok|51800|BCL2-related ovarian killer protein	BC030069|Bok|51800|BCL2-related ovarian killer protein	AK168373|Bok|51800|BCL2-related ovarian killer protein
mm9_v1_chr18_-_13020914_13021067	1.29321	NHLH1,2.p2	BC015075|Osbpl1a|64291|oxysterol binding protein-like 1A	BC046466|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr17_+_35958628_35958663	1.29267	NHLH1,2.p2	AK051003|Ier3|15937|immediate early response 3	AK170477|Ier3|15937|immediate early response 3	AK003466|Ier3|15937|immediate early response 3	BC006950|Ier3|15937|immediate early response 3	NM_133662|Ier3|15937|immediate early response 3	CT010247|Ier3|15937|immediate early response 3	CT010271|Ier3|15937|immediate early response 3
mm9_v1_chr7_+_107756292_107756368	1.2922	NHLH1,2.p2	AK084131|Rab6|19346|RAB6, member RAS oncogene family	AK160866|Rab6|19346|RAB6, member RAS oncogene family	AB041575|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr10_-_70807521_70807640	1.29153	NHLH1,2.p2	AK131605|Cisd1|52637|CDGSH iron sulfur domain 1	AK167898|Cisd1|52637|CDGSH iron sulfur domain 1	BC013522|Cisd1|52637|CDGSH iron sulfur domain 1	AK131595|Cisd1|52637|CDGSH iron sulfur domain 1	AK075907|Cisd1|52637|CDGSH iron sulfur domain 1	NM_134007|Cisd1|52637|CDGSH iron sulfur domain 1	AK131812|Cisd1|52637|CDGSH iron sulfur domain 1	AK131995|Cisd1|52637|CDGSH iron sulfur domain 1	BC019860|Cisd1|52637|CDGSH iron sulfur domain 1	BC021952|Cisd1|52637|CDGSH iron sulfur domain 1
mm9_v1_chr14_-_102007883_102008061	1.29003	NHLH1,2.p2	BC117869|Tbc1d4|210789|TBC1 domain family, member 4	BC117870|Tbc1d4|210789|TBC1 domain family, member 4	BC080762|Tbc1d4|210789|TBC1 domain family, member 4	BC064433|Tbc1d4|210789|TBC1 domain family, member 4	AK044719|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr7_-_135561641_135561759	1.28988	NHLH1,2.p2	BC109178|Rgs10|67865|regulator of G-protein signalling 10	AK152143|Rgs10|67865|regulator of G-protein signalling 10	BC109179|Rgs10|67865|regulator of G-protein signalling 10	AK088009|Rgs10|67865|regulator of G-protein signalling 10	AK009283|Rgs10|67865|regulator of G-protein signalling 10	AK017314|Rgs10|67865|regulator of G-protein signalling 10	AK021202|Rgs10|67865|regulator of G-protein signalling 10	NM_026418|Rgs10|67865|regulator of G-protein signalling 10	AK009686|Rgs10|67865|regulator of G-protein signalling 10
mm9_v1_chr4_+_49072327_49072465	1.28562	NHLH1,2.p2	AK053451|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK087514|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AY345342|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	NM_178756|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	BC096762|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK047614|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK043762|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene
mm9_v1_chr15_+_20378816_20378944	1.2849	NHLH1,2.p2	
mm9_v1_chr2_-_148701203_148701269	1.28339	NHLH1,2.p2	AK002438|Cst3|13010|cystatin C	NM_009976|Cst3|13010|cystatin C	AK014368|Cst3|13010|cystatin C	AK131728|Cst3|13010|cystatin C	AK146333|Cst3|13010|cystatin C
mm9_v1_chr17_+_24987499_24987611	1.28212	NHLH1,2.p2	AK150557|Hagh|14651|hydroxyacyl glutathione hydrolase	AK151231|Hagh|14651|hydroxyacyl glutathione hydrolase	AK152742|Hagh|14651|hydroxyacyl glutathione hydrolase	AK165777|Hagh|14651|hydroxyacyl glutathione hydrolase	BC019817|Hagh|14651|hydroxyacyl glutathione hydrolase	NM_001159626|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr4_+_84851330_84851416	1.28057	NHLH1,2.p2	AK044370|Sh3gl2|20404|SH3-domain GRB2-like 2	BC018385|Sh3gl2|20404|SH3-domain GRB2-like 2	NM_019535|Sh3gl2|20404|SH3-domain GRB2-like 2	AK043424|Sh3gl2|20404|SH3-domain GRB2-like 2	AK139337|Sh3gl2|20404|SH3-domain GRB2-like 2	U58886|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr6_-_40386107_40386145	1.27723	NHLH1,2.p2	AK145280|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK147402|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	AK054277|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene	NM_175528|E330009J07Rik|243780|RIKEN cDNA E330009J07 gene
mm9_v1_chr9_+_121669121_121669172	1.27594	NHLH1,2.p2	NM_001166644|Zfp651|270210|zinc finger protein 651
mm9_v1_chr10_+_122116022_122116053	1.27201	NHLH1,2.p2	
mm9_v1_chr12_-_73509668_73509745	1.26567	NHLH1,2.p2	BC053926|Rtn1|104001|reticulon 1	BC058579|Rtn1|104001|reticulon 1
mm9_v1_chr13_-_105844882_105845009	1.2643	NHLH1,2.p2	AK137417|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK036240|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	AK032138|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein	NM_029879|Rgs7bp|52882|regulator of G-protein signalling 7 binding protein
mm9_v1_chr11_-_45758413_45758456	1.26118	NHLH1,2.p2	AF514309|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	BC094286|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK143661|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	AK082292|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11	NM_028185|Lsm11|72290|U7 snRNP-specific Sm-like protein LSM11
mm9_v1_chr2_+_31951149_31951239	1.2604	NHLH1,2.p2	AK052883|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	NM_145521|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3	BC016136|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3
mm9_v1_chr8_-_88224652_88224792	1.26009	NHLH1,2.p2	BC151050|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	BC157941|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	BC172104|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	BC172139|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	AK081462|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2	AK017458|Neto2|74513|neuropilin (NRP) and tolloid (TLL)-like 2
mm9_v1_chr17_+_79451501_79451601	1.25958	NHLH1,2.p2	BC151027|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	BC151029|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	BC020023|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK148394|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK017598|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	AK037197|Qpct|70536|glutaminyl-peptide cyclotransferase (glutaminyl cyclase)
mm9_v1_chr9_-_86775154_86775279	1.25717	NHLH1,2.p2	M83985|Snap91|20616|synaptosomal-associated protein 91	NM_013669|Snap91|20616|synaptosomal-associated protein 91	BC031773|Snap91|20616|synaptosomal-associated protein 91	AK159570|Snap91|20616|synaptosomal-associated protein 91	AK147087|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr17_+_34092753_34092872	1.25569	NHLH1,2.p2	AK051732|Vps52|224705|vacuolar protein sorting 52 (yeast)	AK052523|Vps52|224705|vacuolar protein sorting 52 (yeast)	NM_172620|Vps52|224705|vacuolar protein sorting 52 (yeast)	BC063329|Vps52|224705|vacuolar protein sorting 52 (yeast)	AK042520|Vps52|224705|vacuolar protein sorting 52 (yeast)
mm9_v1_chr11_-_110198978_110199029	1.25122	NHLH1,2.p2	AK047188|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AF491842|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	BC064823|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	AK035955|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5	NM_147219|Abca5|217265|ATP-binding cassette, sub-family A (ABC1), member 5
mm9_v1_chr2_-_164630371_164630416	1.24937	NHLH1,2.p2	AF441166|Acot8|170789|acyl-CoA thioesterase 8	NM_133240|Acot8|170789|acyl-CoA thioesterase 8
mm9_v1_chr4_+_151712739_151712761	1.24109	NHLH1,2.p2	NM_001081376|Chd5|269610|chromodomain helicase DNA binding protein 5	NM_029216|Chd5|269610|chromodomain helicase DNA binding protein 5	AK147563|Chd5|269610|chromodomain helicase DNA binding protein 5
mm9_v1_chr2_-_181406313_181406348	1.23948	NHLH1,2.p2	L35032|Sox18|20672|SRY-box containing gene 18	BC006612|Sox18|20672|SRY-box containing gene 18	AK144281|Sox18|20672|SRY-box containing gene 18	NM_009236|Sox18|20672|SRY-box containing gene 18
mm9_v1_chr11_+_62094922_62095025	1.23517	NHLH1,2.p2	AK008442|Ttc19|72795|tetratricopeptide repeat domain 19	NM_028360|Ttc19|72795|tetratricopeptide repeat domain 19	NM_029704|Ttc19|72795|tetratricopeptide repeat domain 19	AK034075|Ttc19|72795|tetratricopeptide repeat domain 19
mm9_v1_chr8_-_114267646_114267779	1.23485	NHLH1,2.p2	U48853|Bcar1|12927|breast cancer anti-estrogen resistance 1	BC057578|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167717|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK090315|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK145863|Bcar1|12927|breast cancer anti-estrogen resistance 1	AK167516|Bcar1|12927|breast cancer anti-estrogen resistance 1	NM_009954|Bcar1|12927|breast cancer anti-estrogen resistance 1
mm9_v1_chr16_-_85173851_85173917	1.23454	NHLH1,2.p2	X59379|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr4_-_147504787_147504806	1.23349	NHLH1,2.p2	BC060239|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene	AK086198|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene	NM_027426|2610109H07Rik|70433|RIKEN cDNA 2610109H07 gene
mm9_v1_chr13_-_52626065_52626204	1.22768	NHLH1,2.p2	AK136096|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	AK136101|Diras2|68203|DIRAS family, GTP-binding RAS-like 2	NM_001024474|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr2_+_4897167_4897179	1.2267	NHLH1,2.p2	EU368184|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001113558|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_001165932|Ucma|68527|upper zone of growth plate and cartilage matrix associated	NM_026754|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr5_+_130924661_130924722	1.22441	NHLH1,2.p2	NM_021371|Caln1|140904|calneuron 1	AB041539|Caln1|140904|calneuron 1	BC057129|Caln1|140904|calneuron 1	BC058963|Caln1|140904|calneuron 1	AK158892|Caln1|140904|calneuron 1
mm9_v1_chr15_+_12047769_12048008	1.22409	NHLH1,2.p2	BC094220|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr8_+_35217603_35217630	1.22229	NHLH1,2.p2	NM_026432|Tmem66|67887|transmembrane protein 66	AK077118|Tmem66|67887|transmembrane protein 66
mm9_v1_chr7_+_134072351_134072419	1.22227	NHLH1,2.p2	AK075722|Kctd13|233877|potassium channel tetramerisation domain containing 13	NM_172747|Kctd13|233877|potassium channel tetramerisation domain containing 13	BC079607|Kctd13|233877|potassium channel tetramerisation domain containing 13	AF534881|Kctd13|233877|potassium channel tetramerisation domain containing 13
mm9_v1_chr4_+_119486921_119486941	1.22125	NHLH1,2.p2	AK035881|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr5_-_139801315_139801476	1.21515	NHLH1,2.p2	NM_172723|Adap1|231821|ArfGAP with dual PH domains 1
mm9_v1_chr19_-_4283047_4283120	1.21044	NHLH1,2.p2	BC058982|Ankrd13d|68423|ankyrin repeat domain 13 family, member D
mm9_v1_chr11_+_83223154_83223242	1.2095	NHLH1,2.p2	AK045997|Rasl10b|276952|RAS-like, family 10, member B
mm9_v1_chr6_-_137597775_137597813	1.20796	NHLH1,2.p2	L21671|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr8_+_96334879_96334940	1.20096	NHLH1,2.p2	BC051989|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr17_+_31523178_31523231	1.19927	NHLH1,2.p2	NM_001163748|Pde9a|18585|phosphodiesterase 9A	NM_008804|Pde9a|18585|phosphodiesterase 9A	AK030509|Pde9a|18585|phosphodiesterase 9A	BC061163|Pde9a|18585|phosphodiesterase 9A	AK168143|Pde9a|18585|phosphodiesterase 9A	BC025882|Pde9a|18585|phosphodiesterase 9A	AF031147|Pde9a|18585|phosphodiesterase 9A	AF068247|Pde9a|18585|phosphodiesterase 9A	BC038675|Pde9a|18585|phosphodiesterase 9A	BC046915|Pde9a|18585|phosphodiesterase 9A
mm9_v1_chr1_-_136852427_136852528	1.19829	NHLH1,2.p2	BC145746|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK046012|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK046167|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK080855|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK141375|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK042847|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	NM_001081307|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B	AK007727|Ppp1r12b|329251|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm9_v1_chr2_+_121115337_121115465	1.19641	NHLH1,2.p2	AF182213|Mtap1a|17754|microtubule-associated protein 1 A	NM_032393|Mtap1a|17754|microtubule-associated protein 1 A	AK044057|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr5_-_143084748_143084767	1.19555	NHLH1,2.p2	AK132153|Mmd2|75104|monocyte to macrophage differentiation-associated 2
mm9_v1_chr8_-_13494457_13494536	1.19503	NHLH1,2.p2	BC005444|Gas6|14456|growth arrest specific 6	X59846|Gas6|14456|growth arrest specific 6	AK086187|Gas6|14456|growth arrest specific 6	NM_019521|Gas6|14456|growth arrest specific 6
mm9_v1_chr9_+_26541302_26541653	1.19447	NHLH1,2.p2	AK082739|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	AK220561|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	AK044599|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	AK041316|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	AB055781|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	AK003020|B3gat1|76898|beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
mm9_v1_chr5_-_68238444_68238587	1.1889	NHLH1,2.p2	BC129872|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	U75321|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	AK220560|Atp8a1|11980|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm9_v1_chr19_-_5510453_5510506	1.1884	NHLH1,2.p2	AK047234|Snx32|225861|sorting nexin 32	BC048922|Snx32|225861|sorting nexin 32	NM_001024560|Snx32|225861|sorting nexin 32	AK037118|Snx32|225861|sorting nexin 32	AK143441|Snx32|225861|sorting nexin 32
mm9_v1_chr11_-_5052242_5052243	1.18725	NHLH1,2.p2	AK153702|Emid1|140703|EMI domain containing 1
mm9_v1_chr4_+_119406384_119406407	1.18575	NHLH1,2.p2	AK087330|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454346|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454347|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AK013707|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AK029093|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr4_-_136512727_136512761	1.18069	NHLH1,2.p2	NM_007939|Epha8|13842|Eph receptor A8	U72207|Epha8|13842|Eph receptor A8
mm9_v1_chr11_-_116060026_116060114	1.17313	NHLH1,2.p2	BC054727|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK051539|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AB034914|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK040566|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AK128941|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	AF006688|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl
mm9_v1_chr2_-_5635517_5635531	1.16676	NHLH1,2.p2	AK147657|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	AK162754|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr11_-_115948258_115948310	1.1667	NHLH1,2.p2	AK079300|Wbp2|22378|WW domain binding protein 2	AK151368|Wbp2|22378|WW domain binding protein 2	AK170317|Wbp2|22378|WW domain binding protein 2	NM_016852|Wbp2|22378|WW domain binding protein 2	U40826|Wbp2|22378|WW domain binding protein 2	AK004824|Wbp2|22378|WW domain binding protein 2	AK146572|Wbp2|22378|WW domain binding protein 2	AK170474|Wbp2|22378|WW domain binding protein 2	BC055058|Wbp2|22378|WW domain binding protein 2
mm9_v1_chr19_+_56796545_56796688	1.16624	NHLH1,2.p2	BC140970|Adrb1|11554|adrenergic receptor, beta 1	BC147435|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr8_-_127187033_127187121	1.1652	NHLH1,2.p2	AK084773|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK009458|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK154813|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK170562|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	AK155222|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr8_-_75877365_75877401	1.16446	NHLH1,2.p2	AK053707|Large|16795|like-glycosyltransferase
mm9_v1_chr10_+_7309565_7309776	1.16299	NHLH1,2.p2	AK048919|Lrp11|237253|low density lipoprotein receptor-related protein 11	NM_172784|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK036676|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK050544|Lrp11|237253|low density lipoprotein receptor-related protein 11	AK031994|Lrp11|237253|low density lipoprotein receptor-related protein 11	BC059874|Lrp11|237253|low density lipoprotein receptor-related protein 11
mm9_v1_chr18_+_36446680_36446818	1.15949	NHLH1,2.p2	AF017631|Pura|19290|purine rich element binding protein A
mm9_v1_chr5_-_66155584_66155638	1.15881	NHLH1,2.p2	AK145287|Gm5296|384261|predicted gene 5296
mm9_v1_chr17_+_25854439_25854493	1.15714	NHLH1,2.p2	AB030194|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC048431|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13	BC059712|Gng13|64337|guanine nucleotide binding protein (G protein), gamma 13
mm9_v1_chr19_+_11986887_11986895	1.1566	NHLH1,2.p2	AK150301|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170918|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	NM_172635|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154102|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr12_-_102146390_102146407	1.15547	NHLH1,2.p2	AK087410|Gpr68|238377|G protein-coupled receptor 68	NM_001177673|Gpr68|238377|G protein-coupled receptor 68	NM_175493|Gpr68|238377|G protein-coupled receptor 68
mm9_v1_chr7_+_52955153_52955456	1.15313	NHLH1,2.p2	AK140073|Car11|12348|carbonic anhydrase 11	AK013465|Car11|12348|carbonic anhydrase 11	AY075026|Car11|12348|carbonic anhydrase 11	NM_009800|Car11|12348|carbonic anhydrase 11	BC019393|Car11|12348|carbonic anhydrase 11
mm9_v1_chr11_-_115228986_115229036	1.15019	NHLH1,2.p2	AK044395|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	AB087506|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	AK049861|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	BC024617|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene	NM_175454|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chr6_-_85324557_85324691	1.14702	NHLH1,2.p2	BC141380|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK154922|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	AK129230|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_001003955|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)	NM_177466|Rab11fip5|52055|RAB11 family interacting protein 5 (class I)
mm9_v1_chr2_+_132607432_132607478	1.14625	NHLH1,2.p2	AK077487|Chgb|12653|chromogranin B
mm9_v1_chr7_-_125848966_125849043	1.14564	NHLH1,2.p2	
mm9_v1_chr11_-_35612058_35612106	1.14402	NHLH1,2.p2	BC052068|Fbll1|237730|fibrillarin-like 1	AK140117|Fbll1|237730|fibrillarin-like 1
mm9_v1_chr14_-_32249250_32249295	1.14222	NHLH1,2.p2	AK165033|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	BC018237|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	AK043375|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)
mm9_v1_chr7_+_71646515_71646591	1.14019	NHLH1,2.p2	BC057620|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2	NM_007461|Apba2|11784|amyloid beta (A4) precursor protein-binding, family A, member 2
mm9_v1_chr16_+_94592307_94592357	1.13733	NHLH1,2.p2	AK088273|Ttc3|22129|tetratricopeptide repeat domain 3	NM_009441|Ttc3|22129|tetratricopeptide repeat domain 3	AK053765|Ttc3|22129|tetratricopeptide repeat domain 3	AK170087|Ttc3|22129|tetratricopeptide repeat domain 3
mm9_v1_chr18_+_67247937_67247965	1.13264	NHLH1,2.p2	AK043665|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type	AK035952|Gnal|14680|guanine nucleotide binding protein, alpha stimulating, olfactory type
mm9_v1_chr11_+_109224104_109224273	1.1322	NHLH1,2.p2	NM_010303|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK011851|Gna13|14674|guanine nucleotide binding protein, alpha 13	M63660|Gna13|14674|guanine nucleotide binding protein, alpha 13	AK149766|Gna13|14674|guanine nucleotide binding protein, alpha 13	BC057665|Gna13|14674|guanine nucleotide binding protein, alpha 13
mm9_v1_chr16_-_28753298_28753313	1.1294	NHLH1,2.p2	AK018774|Fgf12|14167|fibroblast growth factor 12
mm9_v1_chr8_-_109580588_109580636	1.12446	NHLH1,2.p2	AK145515|Cog8|97484|component of oligomeric golgi complex 8	NM_139229|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr17_-_36034018_36034097	1.12401	NHLH1,2.p2	AK172070|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK038622|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene	AK145087|2310061I04Rik|69662|RIKEN cDNA 2310061I04 gene
mm9_v1_chr7_-_125849167_125849210	1.12333	NHLH1,2.p2	AK186739|Gde1|56209|glycerophosphodiester phosphodiesterase 1	BC003902|Gde1|56209|glycerophosphodiester phosphodiesterase 1
mm9_v1_chr12_+_45370113_45370142	1.11782	NHLH1,2.p2	NM_026164|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr4_-_134090950_134091025	1.11686	NHLH1,2.p2	AK187934|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr2_-_30997508_30997548	1.11495	NHLH1,2.p2	AK157135|Fnbp1|14269|formin binding protein 1	AK122308|Fnbp1|14269|formin binding protein 1	NM_001038700|Fnbp1|14269|formin binding protein 1	NM_001177648|Fnbp1|14269|formin binding protein 1	NM_001177649|Fnbp1|14269|formin binding protein 1	NM_019406|Fnbp1|14269|formin binding protein 1
mm9_v1_chr14_-_76956445_76956583	1.11402	NHLH1,2.p2	AY425619|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	NM_001160326|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	AK012850|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr16_+_5233683_5233739	1.11342	NHLH1,2.p2	AK145871|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)	NM_145362|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)	BC011281|Alg1|208211|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)
mm9_v1_chr5_-_30890848_30890993	1.11334	NHLH1,2.p2	AK035982|LOC100502829|100502829|hypothetical LOC100502829	AK138331|LOC100502829|100502829|hypothetical LOC100502829
mm9_v1_chr9_+_15043488_15043639	1.11248	NHLH1,2.p2	AK008621|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	AK034938|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	NM_026955|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene	BC055786|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene
mm9_v1_chr6_-_58857000_58857134	1.11233	NHLH1,2.p2	AB041556|Nap1l5|58243|nucleosome assembly protein 1-like 5	BC046332|Nap1l5|58243|nucleosome assembly protein 1-like 5	NM_021432|Nap1l5|58243|nucleosome assembly protein 1-like 5
mm9_v1_chr7_-_20281824_20281947	1.11105	NHLH1,2.p2	
mm9_v1_chr2_+_91367120_91367143	1.11092	NHLH1,2.p2	AK165862|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chr1_-_79855177_79855208	1.11022	NHLH1,2.p2	BC010675|Serpine2|20720|serine (or cysteine) peptidase inhibitor, clade E, member 2
mm9_v1_chr3_+_96501053_96501091	1.10948	NHLH1,2.p2	BC051252|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr19_-_5457470_5457607	1.10891	NHLH1,2.p2	BC016659|Ccdc85b|240514|coiled-coil domain containing 85B	BC094592|Ccdc85b|240514|coiled-coil domain containing 85B	BC058411|Ccdc85b|240514|coiled-coil domain containing 85B	NM_198616|Ccdc85b|240514|coiled-coil domain containing 85B
mm9_v1_chr4_+_8617613_8617703	1.09976	NHLH1,2.p2	AK035953|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr12_+_75385267_75385319	1.09964	NHLH1,2.p2	AK007020|1700086L19Rik|74284|RIKEN cDNA 1700086L19 gene
mm9_v1_chr16_+_91270319_91270415	1.09885	NHLH1,2.p2	AK158791|Olig1|50914|oligodendrocyte transcription factor 1
mm9_v1_chr16_-_3884504_3884577	1.0963	NHLH1,2.p2	AK172006|Zfp597|71063|zinc finger protein 597
mm9_v1_chr9_-_58884114_58884258	1.09144	NHLH1,2.p2	Y09535|Neo1|18007|neogenin	BC054540|Neo1|18007|neogenin	AK084609|Neo1|18007|neogenin	NM_001042752|Neo1|18007|neogenin	NM_008684|Neo1|18007|neogenin
mm9_v1_chr2_-_32702729_32702816	1.08858	NHLH1,2.p2	NM_009295|Stxbp1|20910|syntaxin binding protein 1	NM_001113569|Stxbp1|20910|syntaxin binding protein 1
mm9_v1_chr2_-_25947466_25947505	1.08769	NHLH1,2.p2	AK147310|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	AK157946|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr4_-_106136704_106136777	1.08698	NHLH1,2.p2	AK149520|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9	AK043077|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9
mm9_v1_chr11_+_72832489_72832515	1.0829	NHLH1,2.p2	AK144483|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	NM_018883|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chr7_-_29123775_29123801	1.07792	NHLH1,2.p2	AK146650|Supt5h|20924|suppressor of Ty 5 homolog (S. cerevisiae)
mm9_v1_chr2_-_162486882_162486956	1.07463	NHLH1,2.p2	AF244125|Ptprt|19281|protein tyrosine phosphatase, receptor type, T	NM_021464|Ptprt|19281|protein tyrosine phosphatase, receptor type, T
mm9_v1_chr4_+_117507914_117507983	1.07427	NHLH1,2.p2	AK014572|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9	X67056|Slc6a9|14664|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm9_v1_chr16_+_13671936_13672057	1.07191	NHLH1,2.p2	NM_001177552|Bfar|67118|bifunctional apoptosis regulator	NM_025976|Bfar|67118|bifunctional apoptosis regulator	AK013950|3110001I22Rik|66598|RIKEN cDNA 3110001I22 gene	AK041839|Bfar|67118|bifunctional apoptosis regulator
mm9_v1_chr19_+_3323262_3323319	1.07168	NHLH1,2.p2	NM_013495|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver	BC054791|Cpt1a|12894|carnitine palmitoyltransferase 1a, liver
mm9_v1_chr15_-_36723995_36724005	1.064	NHLH1,2.p2	BC050891|Ywhaz|22631|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm9_v1_chr7_-_118226515_118226580	1.06373	NHLH1,2.p2	AK150745|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK151637|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	AK144309|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	U76112|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC057673|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	BC127064|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_001040131|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2	NM_013507|Eif4g2|13690|eukaryotic translation initiation factor 4, gamma 2
mm9_v1_chr11_-_7113899_7113931	1.06338	NHLH1,2.p2	BC031421|Igfbp3|16009|insulin-like growth factor binding protein 3	BC058261|Igfbp3|16009|insulin-like growth factor binding protein 3	NM_008343|Igfbp3|16009|insulin-like growth factor binding protein 3
mm9_v1_chr11_-_94335350_94335511	1.06337	NHLH1,2.p2	BC057399|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001112813|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177888|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_001177890|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit	NM_009783|Cacna1g|12291|calcium channel, voltage-dependent, T type, alpha 1G subunit
mm9_v1_chr17_-_37160143_37160232	1.05946	NHLH1,2.p2	AY566830|Mog|17441|myelin oligodendrocyte glycoprotein	BC080860|Mog|17441|myelin oligodendrocyte glycoprotein	U64572|Mog|17441|myelin oligodendrocyte glycoprotein	BC050763|Mog|17441|myelin oligodendrocyte glycoprotein	AK135036|Mog|17441|myelin oligodendrocyte glycoprotein
mm9_v1_chr3_+_53959956_53960294	1.05919	NHLH1,2.p2	AK084109|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK080670|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK084139|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	NM_016984|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	U50921|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	U50922|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	BC120729|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	BC131915|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK044265|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AF190646|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AF011543|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AF019663|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4	AK049788|Trpc4|22066|transient receptor potential cation channel, subfamily C, member 4
mm9_v1_chr8_+_121868362_121868462	1.05899	NHLH1,2.p2	AK050550|Hsbp1|68196|heat shock factor binding protein 1	AK018708|Hsbp1|68196|heat shock factor binding protein 1	AK078498|Hsbp1|68196|heat shock factor binding protein 1	AK145940|Hsbp1|68196|heat shock factor binding protein 1	BC002153|Hsbp1|68196|heat shock factor binding protein 1	NM_024219|Hsbp1|68196|heat shock factor binding protein 1
mm9_v1_chr5_+_139856534_139856673	1.05842	NHLH1,2.p2	AK155280|Gpr146|80290|G protein-coupled receptor 146	AK154478|Gpr146|80290|G protein-coupled receptor 146	AK046512|Gpr146|80290|G protein-coupled receptor 146	AK089232|Gpr146|80290|G protein-coupled receptor 146	AK154708|Gpr146|80290|G protein-coupled receptor 146	AK155876|Gpr146|80290|G protein-coupled receptor 146	NM_030258|Gpr146|80290|G protein-coupled receptor 146	BC003323|Gpr146|80290|G protein-coupled receptor 146	AK050034|Gpr146|80290|G protein-coupled receptor 146	AK087100|Gpr146|80290|G protein-coupled receptor 146	AK155212|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chrX_-_101017152_101017262	1.05732	NHLH1,2.p2	AB265788|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	BC080678|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	BC096587|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr10_-_76881008_76881043	1.05678	NHLH1,2.p2	AK138318|Adarb1|110532|adenosine deaminase, RNA-specific, B1	AK147298|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_001024837|Adarb1|110532|adenosine deaminase, RNA-specific, B1	NM_130895|Adarb1|110532|adenosine deaminase, RNA-specific, B1
mm9_v1_chr7_+_114514258_114514338	1.05594	NHLH1,2.p2	AK089115|Syt9|60510|synaptotagmin IX	NM_021889|Syt9|60510|synaptotagmin IX	AK156631|Syt9|60510|synaptotagmin IX	BC132495|Syt9|60510|synaptotagmin IX	BC137904|Syt9|60510|synaptotagmin IX	BC145024|Syt9|60510|synaptotagmin IX
mm9_v1_chr4_+_40669908_40669973	1.05587	NHLH1,2.p2	NM_001164671|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1	NM_001164672|Dnaja1|15502|DnaJ (Hsp40) homolog, subfamily A, member 1
mm9_v1_chr1_+_20880688_20880689	1.04935	NHLH1,2.p2	AK048045|Paqr8|74229|progestin and adipoQ receptor family member VIII	AY424297|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr9_-_114842996_114843065	1.04865	NHLH1,2.p2	AK050572|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK172886|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr2_-_164268672_164268690	1.0486	NHLH1,2.p2	BC005679|Sdc4|20971|syndecan 4	AK134326|Sdc4|20971|syndecan 4	AK153445|Sdc4|20971|syndecan 4	AK145805|Sdc4|20971|syndecan 4	AK159215|Sdc4|20971|syndecan 4	AK164952|Sdc4|20971|syndecan 4	D89571|Sdc4|20971|syndecan 4	NM_011521|Sdc4|20971|syndecan 4
mm9_v1_chr8_+_86939262_86939275	1.04756	NHLH1,2.p2	AK147288|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	NM_007578|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147277|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147498|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	AK147697|Cacna1a|12286|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm9_v1_chr12_-_4914313_4914463	1.04655	NHLH1,2.p2	AK031821|Ubxn2a|217379|UBX domain protein 2A	NM_145441|Ubxn2a|217379|UBX domain protein 2A	AK134666|Ubxn2a|217379|UBX domain protein 2A	AK041556|Ubxn2a|217379|UBX domain protein 2A	AK161940|Ubxn2a|217379|UBX domain protein 2A
mm9_v1_chr6_+_113232300_113232305	1.04583	NHLH1,2.p2	AK042692|Cpne9|211232|copine family member IX	AK137422|Cpne9|211232|copine family member IX	NM_170673|Cpne9|211232|copine family member IX
mm9_v1_chr3_-_94386590_94386623	1.04471	NHLH1,2.p2	AK147452|Snx27|76742|sorting nexin family member 27	NM_001082484|Snx27|76742|sorting nexin family member 27	NM_029721|Snx27|76742|sorting nexin family member 27
mm9_v1_chr2_+_25251393_25251477	1.04165	NHLH1,2.p2	NM_009849|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AK002553|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	U91511|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AK172281|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AY376711|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	BC011241|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2	AF042811|Entpd2|12496|ectonucleoside triphosphate diphosphohydrolase 2
mm9_v1_chr18_+_35989376_35989483	1.04066	NHLH1,2.p2	AK005364|Cxxc5|67393|CXXC finger 5	BC089314|Cxxc5|67393|CXXC finger 5	NM_133687|Cxxc5|67393|CXXC finger 5
mm9_v1_chr10_-_6979627_6979716	1.04043	NHLH1,2.p2	AK082372|Ppp1r14c|76142|protein phosphatase 1, regulatory (inhibitor) subunit 14c
mm9_v1_chr1_+_189821727_189821874	1.0395	NHLH1,2.p2	BC082324|Esrrg|26381|estrogen-related receptor gamma	NM_011935|Esrrg|26381|estrogen-related receptor gamma	AB093266|Esrrg|26381|estrogen-related receptor gamma	AF117254|Esrrg|26381|estrogen-related receptor gamma	AB221580|Esrrg|26381|estrogen-related receptor gamma
mm9_v1_chr13_+_49063548_49063655	1.03768	NHLH1,2.p2	BC045201|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene	BC024672|C030044B11Rik|68128|RIKEN cDNA C030044B11 gene
mm9_v1_chr10_+_13685882_13685927	1.03385	NHLH1,2.p2	AK147419|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr16_-_4789939_4789942	1.03265	NHLH1,2.p2	
mm9_v1_chr13_+_54472705_54472742	1.02899	NHLH1,2.p2	NM_009946|Cplx2|12890|complexin 2
mm9_v1_chr10_-_87966607_87966746	1.02835	NHLH1,2.p2	AK032497|Chpt1|212862|choline phosphotransferase 1	AY445814|Chpt1|212862|choline phosphotransferase 1	AK007964|Chpt1|212862|choline phosphotransferase 1	BC016251|Chpt1|212862|choline phosphotransferase 1	BC031435|Chpt1|212862|choline phosphotransferase 1	NM_001146690|Chpt1|212862|choline phosphotransferase 1	NM_144807|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr5_-_130478834_130478918	1.02796	NHLH1,2.p2	BC018202|Gusb|110006|glucuronidase, beta	AK146247|Gusb|110006|glucuronidase, beta
mm9_v1_chr3_-_108830522_108830608	1.0242	NHLH1,2.p2	NM_001163567|Fam102b|329739|family with sequence similarity 102, member B
mm9_v1_chr7_-_116895708_116895795	1.02364	NHLH1,2.p2	AK009147|Tmem9b|56786|TMEM9 domain family, member B	AK077253|Tmem9b|56786|TMEM9 domain family, member B	AK007430|Tmem9b|56786|TMEM9 domain family, member B	BC002208|Tmem9b|56786|TMEM9 domain family, member B	NM_020050|Tmem9b|56786|TMEM9 domain family, member B	AK147127|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chr2_-_134469754_134469776	1.02291	NHLH1,2.p2	BC050918|Tmx4|52837|thioredoxin-related transmembrane protein 4	AK033111|Tmx4|52837|thioredoxin-related transmembrane protein 4
mm9_v1_chr9_+_86465577_86465659	1.0207	NHLH1,2.p2	NM_001145969|Rwdd2a|69519|RWD domain containing 2A	AK006533|Rwdd2a|69519|RWD domain containing 2A	BC115691|Rwdd2a|69519|RWD domain containing 2A	BC115692|Rwdd2a|69519|RWD domain containing 2A	NM_001145968|Rwdd2a|69519|RWD domain containing 2A	NM_027100|Rwdd2a|69519|RWD domain containing 2A
mm9_v1_chr2_-_180869796_180869941	1.01905	NHLH1,2.p2	AF490773|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000494|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000495|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000496|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000497|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000498|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000499|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000500|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000501|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000502|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000503|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	AB000504|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	BC145453|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001003824|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001003825|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006668|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006669|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006674|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006675|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006676|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006677|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006678|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006679|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_001006680|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2	NM_010611|Kcnq2|16536|potassium voltage-gated channel, subfamily Q, member 2
mm9_v1_chr16_+_94791713_94791812	1.01859	NHLH1,2.p2	NM_007890|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr2_+_25733302_25733389	1.01768	NHLH1,2.p2	BC141190|Kcnt1|227632|potassium channel, subfamily T, member 1	BC171963|Kcnt1|227632|potassium channel, subfamily T, member 1	AK086119|Kcnt1|227632|potassium channel, subfamily T, member 1	NM_175462|Kcnt1|227632|potassium channel, subfamily T, member 1	AK147625|Kcnt1|227632|potassium channel, subfamily T, member 1
mm9_v1_chrX_-_9240025_9240132	1.01717	NHLH1,2.p2	BC030032|Dynlt3|67117|dynein light chain Tctex-type 3	AK010186|Dynlt3|67117|dynein light chain Tctex-type 3	AK018842|Dynlt3|67117|dynein light chain Tctex-type 3	AK088277|Dynlt3|67117|dynein light chain Tctex-type 3	NM_025975|Dynlt3|67117|dynein light chain Tctex-type 3
mm9_v1_chr19_-_18706239_18706339	1.0155	NHLH1,2.p2	AK008123|Ostf1|20409|osteoclast stimulating factor 1	AK008467|Ostf1|20409|osteoclast stimulating factor 1	U58888|Ostf1|20409|osteoclast stimulating factor 1	AK145949|Ostf1|20409|osteoclast stimulating factor 1	AK005525|Ostf1|20409|osteoclast stimulating factor 1	AK150145|Ostf1|20409|osteoclast stimulating factor 1	AK155028|Ostf1|20409|osteoclast stimulating factor 1	AK149175|Ostf1|20409|osteoclast stimulating factor 1	AK002899|Ostf1|20409|osteoclast stimulating factor 1	AK010074|Ostf1|20409|osteoclast stimulating factor 1	NM_017375|Ostf1|20409|osteoclast stimulating factor 1
mm9_v1_chr9_+_96096690_96096766	1.01354	NHLH1,2.p2	AK044784|Tfdp2|211586|transcription factor Dp 2	NM_001184706|Tfdp2|211586|transcription factor Dp 2	NM_001184708|Tfdp2|211586|transcription factor Dp 2	NM_178667|Tfdp2|211586|transcription factor Dp 2	AK029055|Tfdp2|211586|transcription factor Dp 2	AK053881|Tfdp2|211586|transcription factor Dp 2	AK162972|Tfdp2|211586|transcription factor Dp 2	AK079624|Tfdp2|211586|transcription factor Dp 2
mm9_v1_chr5_-_63157309_63157425	1.01315	NHLH1,2.p2	AK037027|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK039153|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	AK041540|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	NM_178407|Arap2|212285|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm9_v1_chr15_-_99358024_99358174	1.01145	NHLH1,2.p2	AF468028|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK013476|Faim2|72393|Fas apoptotic inhibitory molecule 2	BC032278|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK129246|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK081252|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK147343|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK136791|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK030513|Faim2|72393|Fas apoptotic inhibitory molecule 2	AK080839|Faim2|72393|Fas apoptotic inhibitory molecule 2
mm9_v1_chr7_+_134119949_134119977	1.01135	NHLH1,2.p2	BC032182|Cdipt|52858|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	AK079226|Cdipt|52858|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm9_v1_chr19_+_4855178_4855267	1.01091	NHLH1,2.p2	AF197480|Ctsf|56464|cathepsin F	BC051131|Ctsf|56464|cathepsin F	AF136280|Ctsf|56464|cathepsin F	BC058758|Ctsf|56464|cathepsin F	AK017474|Ctsf|56464|cathepsin F	AK075862|Ctsf|56464|cathepsin F	AJ131851|Ctsf|56464|cathepsin F
mm9_v1_chr4_+_84530259_84530307	1.01051	NHLH1,2.p2	AK052558|Cntln|338349|centlein, centrosomal protein	AK031604|Cntln|338349|centlein, centrosomal protein
mm9_v1_chr11_-_83276417_83276531	1.00725	NHLH1,2.p2	BC137921|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	BC145048|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	BC145049|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AY065653|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AY071828|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AY071829|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	NM_080453|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	NM_172797|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AK087705|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AK151100|Mmp28|118453|matrix metallopeptidase 28 (epilysin)	AK051258|Mmp28|118453|matrix metallopeptidase 28 (epilysin)
mm9_v1_chrX_+_66613505_66613505	1.00666	NHLH1,2.p2	AJ001549|Aff2|14266|AF4/FMR2 family, member 2	NM_008032|Aff2|14266|AF4/FMR2 family, member 2
mm9_v1_chr5_-_120953567_120953653	1.00387	NHLH1,2.p2	AK030234|Plbd2|71772|phospholipase B domain containing 2	BC026395|Plbd2|71772|phospholipase B domain containing 2	BC038605|Plbd2|71772|phospholipase B domain containing 2	AF217003|Plbd2|71772|phospholipase B domain containing 2	BC060095|Plbd2|71772|phospholipase B domain containing 2	AK164220|Plbd2|71772|phospholipase B domain containing 2	AK170631|Plbd2|71772|phospholipase B domain containing 2	BC048826|Plbd2|71772|phospholipase B domain containing 2	AK043608|Plbd2|71772|phospholipase B domain containing 2	AK046937|Plbd2|71772|phospholipase B domain containing 2	AK150201|Plbd2|71772|phospholipase B domain containing 2	AK170387|Plbd2|71772|phospholipase B domain containing 2	AK032930|Plbd2|71772|phospholipase B domain containing 2	AK042089|Plbd2|71772|phospholipase B domain containing 2	AK029813|Plbd2|71772|phospholipase B domain containing 2	NM_023625|Plbd2|71772|phospholipase B domain containing 2	AK004973|Plbd2|71772|phospholipase B domain containing 2
mm9_v1_chr9_+_54434140_54434327	1.00285	NHLH1,2.p2	AK158646|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159051|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK117103|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK152353|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK159666|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK160054|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK150618|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK164038|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168149|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK167822|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK151304|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK153459|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168049|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK010065|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK032787|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK047951|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK168034|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK084523|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC049956|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	NM_029573|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	AK169152|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha	BC034273|Idh3a|67834|isocitrate dehydrogenase 3 (NAD+) alpha
mm9_v1_chr17_+_23810844_23810967	1.00231	NHLH1,2.p2	AK003865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)	BC079865|Hcfc1r1|353502|host cell factor C1 regulator 1 (XPO1-dependent)
mm9_v1_chr17_+_34766489_34766633	1.00133	NHLH1,2.p2	BC128489|Prrt1|260297|proline-rich transmembrane protein 1	NM_030890|Prrt1|260297|proline-rich transmembrane protein 1	BC115512|Prrt1|260297|proline-rich transmembrane protein 1	BC115513|Prrt1|260297|proline-rich transmembrane protein 1
mm9_v1_chr4_+_151671335_151671430	0.999305	NHLH1,2.p2	BC110695|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AK154135|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AK154410|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	BC057132|Icmt|57295|isoprenylcysteine carboxyl methyltransferase
mm9_v1_chr4_-_86876328_86876443	0.998328	NHLH1,2.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr9_-_114843103_114843123	0.997781	NHLH1,2.p2	NM_175380|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr2_+_119176963_119176993	0.996516	NHLH1,2.p2	NM_026929|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	AK032218|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr5_+_65928651_65928694	0.996412	NHLH1,2.p2	BC002013|Ube2k|53323|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)
mm9_v1_chr1_+_23768764_23768872	0.995371	NHLH1,2.p2	AK052640|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	NM_172124|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AB055902|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK048146|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	AK220433|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC056368|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	BC058082|B3gat2|280645|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm9_v1_chr1_+_155747072_155747097	0.995138	NHLH1,2.p2	AK137969|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK159106|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK160670|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AY044241|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	NM_008131|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK162685|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	AK168493|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	BC015086|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)	X16314|Glul|14645|glutamate-ammonia ligase (glutamine synthetase)
mm9_v1_chr3_-_9610062_9610137	0.992323	NHLH1,2.p2	AF292939|Zfp704|170753|zinc finger protein 704	NM_133218|Zfp704|170753|zinc finger protein 704
mm9_v1_chr11_-_46125777_46125868	0.992165	NHLH1,2.p2	AK018280|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AF334144|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK030397|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147971|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	BC056974|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	AK147586|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2	NM_133769|Cyfip2|76884|cytoplasmic FMR1 interacting protein 2
mm9_v1_chr11_-_70501430_70501474	0.990505	NHLH1,2.p2	AK039670|Camta2|216874|calmodulin binding transcription activator 2	BC049133|Camta2|216874|calmodulin binding transcription activator 2	BC056395|Camta2|216874|calmodulin binding transcription activator 2	AK169118|Camta2|216874|calmodulin binding transcription activator 2	AK150186|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr12_-_59369884_59369920	0.987136	NHLH1,2.p2	AK004557|Clec14a|66864|C-type lectin domain family 14, member a	AK033733|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr5_-_124545776_124545806	0.986711	NHLH1,2.p2	AK044140|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AB093298|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	BC026455|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	AF216495|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9	NM_019875|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr11_-_59263508_59263510	0.986465	NHLH1,2.p2	AK144165|Snap47|67826|synaptosomal-associated protein, 47
mm9_v1_chr8_-_125777949_125778247	0.984487	NHLH1,2.p2	AK051715|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK154409|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK155433|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK010402|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK005046|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK028751|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK151498|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	NM_028200|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	BC057621|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AK032561|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene	AY751521|1300018I17Rik|72325|RIKEN cDNA 1300018I17 gene
mm9_v1_chr12_-_59369833_59369867	0.982774	NHLH1,2.p2	AK080201|Clec14a|66864|C-type lectin domain family 14, member a	AK018432|Clec14a|66864|C-type lectin domain family 14, member a	AK164665|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chrX_+_100551808_100551914	0.981547	NHLH1,2.p2	NM_009767|Chic1|12212|cysteine-rich hydrophobic domain 1	AK034427|Chic1|12212|cysteine-rich hydrophobic domain 1	AK135974|Chic1|12212|cysteine-rich hydrophobic domain 1	Y11896|Chic1|12212|cysteine-rich hydrophobic domain 1	BC132322|Chic1|12212|cysteine-rich hydrophobic domain 1	BC138730|Chic1|12212|cysteine-rich hydrophobic domain 1	AK013993|Chic1|12212|cysteine-rich hydrophobic domain 1
mm9_v1_chr13_+_49282844_49282955	0.978962	NHLH1,2.p2	AK159111|Ninj1|18081|ninjurin 1	AK077602|Ninj1|18081|ninjurin 1	AK171973|Ninj1|18081|ninjurin 1	AK160045|Ninj1|18081|ninjurin 1	AK155741|Ninj1|18081|ninjurin 1	BC118937|Ninj1|18081|ninjurin 1	NM_013610|Ninj1|18081|ninjurin 1	U91513|Ninj1|18081|ninjurin 1	BC049600|Ninj1|18081|ninjurin 1
mm9_v1_chr18_-_62071451_62071482	0.978665	NHLH1,2.p2	BC094229|Ablim3|319713|actin binding LIM protein family, member 3	AK082380|Ablim3|319713|actin binding LIM protein family, member 3	BC060275|Ablim3|319713|actin binding LIM protein family, member 3	NM_198649|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr13_-_25361773_25361915	0.976687	NHLH1,2.p2	AK138191|Nrsn1|22360|neurensin 1	D83206|Nrsn1|22360|neurensin 1	AK160941|Nrsn1|22360|neurensin 1	NM_009513|Nrsn1|22360|neurensin 1
mm9_v1_chr7_-_51926142_51926212	0.975948	NHLH1,2.p2	AY363100|Myh14|71960|myosin, heavy polypeptide 14
mm9_v1_chr13_-_102538106_102538184	0.974206	NHLH1,2.p2	M60651|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	U50413|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	BC026146|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK160493|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	AK171366|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	NM_001077495|Pik3r1|18708|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm9_v1_chrX_-_148776674_148776969	0.971866	NHLH1,2.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chr7_+_107756205_107756288	0.970709	NHLH1,2.p2	AK160134|Rab6|19346|RAB6, member RAS oncogene family	AK051246|Rab6|19346|RAB6, member RAS oncogene family	AK083262|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr10_+_13220833_13220918	0.968766	NHLH1,2.p2	AK030320|Fuca2|66848|fucosidase, alpha-L- 2, plasma	NM_025799|Fuca2|66848|fucosidase, alpha-L- 2, plasma	AK017443|Fuca2|66848|fucosidase, alpha-L- 2, plasma	BC018181|Fuca2|66848|fucosidase, alpha-L- 2, plasma	BC004039|Fuca2|66848|fucosidase, alpha-L- 2, plasma	AK159288|Fuca2|66848|fucosidase, alpha-L- 2, plasma	AK163042|Fuca2|66848|fucosidase, alpha-L- 2, plasma	AK008653|Fuca2|66848|fucosidase, alpha-L- 2, plasma	AK002675|Fuca2|66848|fucosidase, alpha-L- 2, plasma	AK146295|Fuca2|66848|fucosidase, alpha-L- 2, plasma	BC094449|Fuca2|66848|fucosidase, alpha-L- 2, plasma
mm9_v1_chr11_-_88725877_88725929	0.968093	NHLH1,2.p2	AK076216|Akap1|11640|A kinase (PRKA) anchor protein 1	NM_001042541|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr19_+_8894752_8894803	0.965915	NHLH1,2.p2	AK032708|Hnrnpul2|68693|heterogeneous nuclear ribonucleoprotein U-like 2	DQ000354|Hnrnpul2|68693|heterogeneous nuclear ribonucleoprotein U-like 2
mm9_v1_chr14_+_9046655_9046821	0.965806	NHLH1,2.p2	AK082924|Kctd6|71393|potassium channel tetramerisation domain containing 6	AK017384|Kctd6|71393|potassium channel tetramerisation domain containing 6	NM_027782|Kctd6|71393|potassium channel tetramerisation domain containing 6	BC096370|Kctd6|71393|potassium channel tetramerisation domain containing 6
mm9_v1_chr5_-_149363989_149364264	0.965631	NHLH1,2.p2	BC025595|Ubl3|24109|ubiquitin-like 3	AK145952|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr19_+_45063750_45063833	0.965441	NHLH1,2.p2	AK039355|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	BC054532|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AK173219|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	AF134918|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	NM_011976|Sema4g|26456|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm9_v1_chr8_+_109555200_109555247	0.963625	NHLH1,2.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr5_+_30062437_30062485	0.959361	NHLH1,2.p2	NM_001037940|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001037941|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_001127367|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	NM_011847|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK134387|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6
mm9_v1_chr10_-_90586663_90586709	0.959299	NHLH1,2.p2	BC004030|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK077274|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK152341|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	AK168580|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	NM_133668|Slc25a3|18674|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm9_v1_chr2_+_177876635_177876639	0.956266	NHLH1,2.p2	AK135144|Phactr3|74189|phosphatase and actin regulator 3	NM_028806|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr15_+_82105647_82105870	0.95555	NHLH1,2.p2	AK169916|Sept3|24050|septin 3	AK164861|Sept3|24050|septin 3	AK046722|Sept3|24050|septin 3	AK030668|Sept3|24050|septin 3	AK141915|Sept3|24050|septin 3
mm9_v1_chr11_+_80290509_80290569	0.955001	NHLH1,2.p2	AK142868|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK086621|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK141549|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK169667|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK079557|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC050768|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	NM_009871|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK039999|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC058697|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	BC046823|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK048617|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr8_+_13159112_13159277	0.954707	NHLH1,2.p2	NM_010684|Lamp1|16783|lysosomal-associated membrane protein 1	BC049097|Lamp1|16783|lysosomal-associated membrane protein 1	AY069968|Lamp1|16783|lysosomal-associated membrane protein 1	AK172007|Lamp1|16783|lysosomal-associated membrane protein 1	AK159096|Lamp1|16783|lysosomal-associated membrane protein 1	AK004637|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr14_+_64225366_64225366	0.948984	NHLH1,2.p2	NM_173393|Xkr6|219149|X Kell blood group precursor related family member 6 homolog
mm9_v1_chr1_+_50984361_50984403	0.94885	NHLH1,2.p2	AB041565|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK029307|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	NM_019790|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK076254|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AK135038|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	BC034850|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2	AB017270|Tmeff2|56363|transmembrane protein with EGF-like and two follistatin-like domains 2
mm9_v1_chr7_-_148196526_148196604	0.947351	NHLH1,2.p2	BC010291|Ifitm3|66141|interferon induced transmembrane protein 3
mm9_v1_chrX_+_33428784_33428826	0.946579	NHLH1,2.p2	AB116935|Dock11|75974|dedicator of cytokinesis 11	NM_001009947|Dock11|75974|dedicator of cytokinesis 11
mm9_v1_chr18_+_32322742_32322855	0.946377	NHLH1,2.p2	AK036364|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	NM_011946|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK143367|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	AK050667|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2	U43186|Map3k2|26405|mitogen-activated protein kinase kinase kinase 2
mm9_v1_chr1_+_60400134_60400231	0.945425	NHLH1,2.p2	AK020848|Cyp20a1|77951|cytochrome P450, family 20, subfamily A, polypeptide 1	AK053388|Cyp20a1|77951|cytochrome P450, family 20, subfamily A, polypeptide 1	NM_030013|Cyp20a1|77951|cytochrome P450, family 20, subfamily A, polypeptide 1	BC049147|Cyp20a1|77951|cytochrome P450, family 20, subfamily A, polypeptide 1
mm9_v1_chr2_-_130867226_130867250	0.943808	NHLH1,2.p2	AB041809|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4
mm9_v1_chr7_-_54387695_54387755	0.943735	NHLH1,2.p2	BC057339|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	BC051975|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5	AK038416|Ptpn5|19259|protein tyrosine phosphatase, non-receptor type 5
mm9_v1_chr11_-_58752374_58752457	0.943093	NHLH1,2.p2	AK076158|Rnf187|108660|ring finger protein 187	AB030190|Rnf187|108660|ring finger protein 187	BC072613|Rnf187|108660|ring finger protein 187	AK088973|Rnf187|108660|ring finger protein 187	NM_022423|Rnf187|108660|ring finger protein 187	AK075944|Rnf187|108660|ring finger protein 187
mm9_v1_chrX_+_160346948_160347157	0.939409	NHLH1,2.p2	AK045558|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK047724|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK167690|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK053941|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK005223|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	BC046964|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	NM_026887|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit	AK043776|Ap1s2|108012|adaptor-related protein complex 1, sigma 2 subunit
mm9_v1_chr2_-_32568570_32568641	0.938295	NHLH1,2.p2	AK155733|Cdk9|107951|cyclin-dependent kinase 9 (CDC2-related kinase)
mm9_v1_chr9_+_121206613_121206652	0.937824	NHLH1,2.p2	AK029123|Trak1|67095|trafficking protein, kinesin binding 1	AK052264|Trak1|67095|trafficking protein, kinesin binding 1	AK041436|Trak1|67095|trafficking protein, kinesin binding 1
mm9_v1_chr5_-_136410393_136410481	0.937019	NHLH1,2.p2	BC008129|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK088847|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AF058799|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AB073970|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK164356|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK076615|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK148618|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK153307|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr7_-_107756791_107756814	0.936609	NHLH1,2.p2	AK007653|Mrpl48|52443|mitochondrial ribosomal protein L48
mm9_v1_chr2_-_42508486_42508592	0.936478	NHLH1,2.p2	BC064765|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)	AK080989|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)	AK039425|Lrp1b|94217|low density lipoprotein-related protein 1B (deleted in tumors)
mm9_v1_chr15_+_26238802_26238874	0.935411	NHLH1,2.p2	AK035990|March11|211147|membrane-associated ring finger (C3HC4) 11	NM_177597|March11|211147|membrane-associated ring finger (C3HC4) 11	AK162044|March11|211147|membrane-associated ring finger (C3HC4) 11	BC139422|March11|211147|membrane-associated ring finger (C3HC4) 11	BC139423|March11|211147|membrane-associated ring finger (C3HC4) 11
mm9_v1_chr2_+_152857587_152857587	0.93484	NHLH1,2.p2	AY534253|Xkr7|228787|X Kell blood group precursor related family member 7 homolog	NM_001011732|Xkr7|228787|X Kell blood group precursor related family member 7 homolog
mm9_v1_chr1_+_37947371_37947412	0.934394	NHLH1,2.p2	AK009074|Mrpl30|107734|mitochondrial ribosomal protein L30	AK089015|Mrpl30|107734|mitochondrial ribosomal protein L30	NM_027098|Mrpl30|107734|mitochondrial ribosomal protein L30
mm9_v1_chr6_-_5248335_5248416	0.932922	NHLH1,2.p2	AK146311|Pon2|330260|paraoxonase 2	AK007350|Pon2|330260|paraoxonase 2	BC062200|Pon2|330260|paraoxonase 2	BC055896|Pon2|330260|paraoxonase 2	NM_183308|Pon2|330260|paraoxonase 2
mm9_v1_chr13_+_93381078_93381085	0.932657	NHLH1,2.p2	AK054475|Serinc5|218442|serine incorporator 5
mm9_v1_chr9_+_14305055_14305063	0.930705	NHLH1,2.p2	NM_023153|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr6_+_71657791_71657963	0.930129	NHLH1,2.p2	AK035238|Reep1|52250|receptor accessory protein 1	AK045056|Reep1|52250|receptor accessory protein 1	NM_178608|Reep1|52250|receptor accessory protein 1	AK053158|Reep1|52250|receptor accessory protein 1	AK136916|Reep1|52250|receptor accessory protein 1	BC046826|Reep1|52250|receptor accessory protein 1	AY562229|Reep1|52250|receptor accessory protein 1
mm9_v1_chr4_+_104829951_104829954	0.930049	NHLH1,2.p2	AK011276|Ppap2b|67916|phosphatidic acid phosphatase type 2B	NM_080555|Ppap2b|67916|phosphatidic acid phosphatase type 2B
mm9_v1_chr14_-_65716907_65716928	0.929572	NHLH1,2.p2	
mm9_v1_chr16_-_18348136_18348153	0.929026	NHLH1,2.p2	AK133778|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed
mm9_v1_chr11_-_95448869_95449017	0.928775	NHLH1,2.p2	AF105292|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	BC038365|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	AK037248|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)	NM_033217|Ngfr|18053|nerve growth factor receptor (TNFR superfamily, member 16)
mm9_v1_chr10_+_114822009_114822046	0.928141	NHLH1,2.p2	AK145652|Zfc3h1|216345|zinc finger, C3H1-type containing	NM_001033261|Zfc3h1|216345|zinc finger, C3H1-type containing
mm9_v1_chr8_+_108225509_108225588	0.926254	NHLH1,2.p2	BC061114|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK158848|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_001047435|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	NM_019695|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	BC049593|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)	AK003030|Pard6a|56513|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm9_v1_chr5_+_43625194_43625217	0.9259	NHLH1,2.p2	AK042065|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	AB100307|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	BC107349|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2	BC107350|Cpeb2|231207|cytoplasmic polyadenylation element binding protein 2
mm9_v1_chr4_-_66065499_66065516	0.925429	NHLH1,2.p2	AK041160|Astn2|56079|astrotactin 2	AK047058|Astn2|56079|astrotactin 2	AK051472|Astn2|56079|astrotactin 2	NM_019514|Astn2|56079|astrotactin 2	NM_207109|Astn2|56079|astrotactin 2
mm9_v1_chr14_+_35123922_35124003	0.925069	NHLH1,2.p2	BC052724|Glud1|14661|glutamate dehydrogenase 1	BC057347|Glud1|14661|glutamate dehydrogenase 1
mm9_v1_chr3_+_146515330_146515360	0.924881	NHLH1,2.p2	NM_027594|Ttll7|70892|tubulin tyrosine ligase-like family, member 7
mm9_v1_chr9_+_110379481_110379600	0.923449	NHLH1,2.p2	AK029776|Kif9|16578|kinesin family member 9	AK087008|Kif9|16578|kinesin family member 9	NM_001163569|Kif9|16578|kinesin family member 9	AJ132889|Kif9|16578|kinesin family member 9	BC115765|Kif9|16578|kinesin family member 9	AK029506|Kif9|16578|kinesin family member 9
mm9_v1_chr16_+_37868418_37868496	0.921599	NHLH1,2.p2	AK090204|Lrrc58|320184|leucine rich repeat containing 58	AK049274|Lrrc58|320184|leucine rich repeat containing 58	NM_177093|Lrrc58|320184|leucine rich repeat containing 58
mm9_v1_chr7_+_29478162_29478199	0.920929	NHLH1,2.p2	AK158463|Fbxo27|233040|F-box protein 27	NM_001163702|Fbxo27|233040|F-box protein 27	AK140275|Fbxo27|233040|F-box protein 27	BC075656|Fbxo27|233040|F-box protein 27
mm9_v1_chr1_+_193542261_193542399	0.919748	NHLH1,2.p2	NM_001134829|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	AK172914|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1	BC013667|Lpgat1|226856|lysophosphatidylglycerol acyltransferase 1
mm9_v1_chr19_+_5637712_5637737	0.919406	NHLH1,2.p2	BC003818|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr5_+_118426792_118426794	0.91904	NHLH1,2.p2	AB093270|Fbxo21|231670|F-box protein 21
mm9_v1_chr3_-_88897207_88897284	0.91766	NHLH1,2.p2	AK039664|Rusc1|72296|RUN and SH3 domain containing 1	BC056360|Rusc1|72296|RUN and SH3 domain containing 1	AK042689|Rusc1|72296|RUN and SH3 domain containing 1	NM_001083807|Rusc1|72296|RUN and SH3 domain containing 1	NM_028188|Rusc1|72296|RUN and SH3 domain containing 1
mm9_v1_chr5_-_24348240_24348246	0.916983	NHLH1,2.p2	AK158213|Rheb|19744|Ras homolog enriched in brain
mm9_v1_chr3_-_89049756_89049818	0.916233	NHLH1,2.p2	BC082299|Trim46|360213|tripartite motif-containing 46	NM_183037|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr7_-_7251473_7251490	0.915669	NHLH1,2.p2	AK133759|Clcn4-2|12727|chloride channel 4-2	AK160325|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr1_-_192803077_192803174	0.915553	NHLH1,2.p2	BC024141|Vash2|226841|vasohibin 2	AK163193|Vash2|226841|vasohibin 2	AK045261|Vash2|226841|vasohibin 2	AK078596|Vash2|226841|vasohibin 2
mm9_v1_chr2_+_156138184_156138368	0.914734	NHLH1,2.p2	AK014912|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	NM_027585|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	BC140978|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	AK162372|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	AK017330|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	AK158271|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene	BC027204|4921517L17Rik|70873|RIKEN cDNA 4921517L17 gene
mm9_v1_chr1_-_64167952_64168022	0.912419	NHLH1,2.p2	BC019604|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	NM_033563|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	BC004700|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	BC040794|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AF338369|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK149362|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr15_+_75692745_75692830	0.910579	NHLH1,2.p2	AK088747|Gsdmd|69146|gasdermin D	AK171294|Gsdmd|69146|gasdermin D	AK007710|Gsdmd|69146|gasdermin D	AK165858|Gsdmd|69146|gasdermin D	NM_026960|Gsdmd|69146|gasdermin D	BC029813|Gsdmd|69146|gasdermin D
mm9_v1_chr14_-_123312303_123312411	0.910332	NHLH1,2.p2	BC080839|A2ld1|223267|AIG2-like domain 1	BC006662|A2ld1|223267|AIG2-like domain 1	AK050251|A2ld1|223267|AIG2-like domain 1	NM_145466|A2ld1|223267|AIG2-like domain 1
mm9_v1_chr1_+_20880690_20880691	0.909442	NHLH1,2.p2	AK031969|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr17_-_17762007_17762019	0.909237	NHLH1,2.p2	AK162332|Lnpep|240028|leucyl/cystinyl aminopeptidase
mm9_v1_chr14_-_22668093_22668141	0.908684	NHLH1,2.p2	CT010388|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC019467|Comtd1|69156|catechol-O-methyltransferase domain containing 1	BC049670|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK007659|Comtd1|69156|catechol-O-methyltransferase domain containing 1	AK054334|Comtd1|69156|catechol-O-methyltransferase domain containing 1	NM_026965|Comtd1|69156|catechol-O-methyltransferase domain containing 1
mm9_v1_chr15_+_101974792_101974939	0.907662	NHLH1,2.p2	X81584|Igfbp6|16012|insulin-like growth factor binding protein 6	BC012723|Igfbp6|16012|insulin-like growth factor binding protein 6	AK157982|Igfbp6|16012|insulin-like growth factor binding protein 6
mm9_v1_chr11_-_76384852_76384920	0.905988	NHLH1,2.p2	AK142364|Abr|109934|active BCR-related gene	NM_198895|Abr|109934|active BCR-related gene
mm9_v1_chr11_+_100870759_100870810	0.905897	NHLH1,2.p2	NM_016920|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK029316|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AF218249|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK036530|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK158786|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC066839|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC071182|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	BC001995|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr10_+_115738429_115738633	0.905508	NHLH1,2.p2	AK147439|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AK147668|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	NM_029928|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	AY077755|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC141006|Ptprb|19263|protein tyrosine phosphatase, receptor type, B	BC145111|Ptprb|19263|protein tyrosine phosphatase, receptor type, B
mm9_v1_chr8_+_88016492_88016583	0.905504	NHLH1,2.p2	AK075894|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK076250|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK031958|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	AK033424|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2	NM_173866|Gpt2|108682|glutamic pyruvate transaminase (alanine aminotransferase) 2
mm9_v1_chr10_+_81038028_81038276	0.904519	NHLH1,2.p2	AK144581|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC071219|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC051955|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	BC062961|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	AF145958|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)	NM_019725|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm9_v1_chr11_-_20731016_20731238	0.903885	NHLH1,2.p2	AK041053|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK167557|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	BC019131|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	NM_173752|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene	AK156350|1110067D22Rik|216551|RIKEN cDNA 1110067D22 gene
mm9_v1_chr13_-_58009653_58009693	0.903689	NHLH1,2.p2	AK049019|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK039058|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	X92864|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	AK036189|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166463|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166464|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166465|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_001166466|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	NM_009262|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr9_-_75458865_75458907	0.901971	NHLH1,2.p2	AF237629|Tmod2|50876|tropomodulin 2
mm9_v1_chr3_-_131006068_131006148	0.901264	NHLH1,2.p2	AK142740|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK018458|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	AK041477|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1	NM_027816|Cyp2u1|71519|cytochrome P450, family 2, subfamily u, polypeptide 1
mm9_v1_chr8_+_89996742_89996746	0.900319	NHLH1,2.p2	AK144513|Gm2694|100040294|predicted gene 2694
mm9_v1_chr15_+_88890140_88890179	0.900178	NHLH1,2.p2	NM_001002005|Panx2|406218|pannexin 2	EU446266|Panx2|406218|pannexin 2
mm9_v1_chr5_+_20692068_20692169	0.894513	NHLH1,2.p2	AK137494|Pion|212167|pigeon homolog (Drosophila)	BC043137|Pion|212167|pigeon homolog (Drosophila)	BC059054|Pion|212167|pigeon homolog (Drosophila)	NM_175437|Pion|212167|pigeon homolog (Drosophila)	AK033694|Pion|212167|pigeon homolog (Drosophila)	AK039306|Pion|212167|pigeon homolog (Drosophila)	AK080244|Pion|212167|pigeon homolog (Drosophila)	AK170515|Pion|212167|pigeon homolog (Drosophila)	BC022737|Pion|212167|pigeon homolog (Drosophila)	BC144952|Pion|212167|pigeon homolog (Drosophila)	BC144953|Pion|212167|pigeon homolog (Drosophila)
mm9_v1_chr17_-_65962822_65962911	0.89341	NHLH1,2.p2	AF157497|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK003576|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK159582|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK168824|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK088132|Vapa|30960|vesicle-associated membrane protein, associated protein A	BC003866|Vapa|30960|vesicle-associated membrane protein, associated protein A	AK167381|Vapa|30960|vesicle-associated membrane protein, associated protein A	NM_013933|Vapa|30960|vesicle-associated membrane protein, associated protein A
mm9_v1_chr10_+_29032971_29033049	0.893098	NHLH1,2.p2	NM_001110195|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK150932|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK152285|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK153454|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1
mm9_v1_chrX_-_70905384_70905478	0.892154	NHLH1,2.p2	BC055891|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	BC051996|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase	AK158755|Pnck|93843|pregnancy upregulated non-ubiquitously expressed CaM kinase
mm9_v1_chrX_+_54306724_54306791	0.88942	NHLH1,2.p2	AK012522|Htatsf1|72459|HIV TAT specific factor 1	BC037711|Htatsf1|72459|HIV TAT specific factor 1	NM_028242|Htatsf1|72459|HIV TAT specific factor 1
mm9_v1_chr15_-_76059926_76059969	0.884501	NHLH1,2.p2	AF188019|Plec|18810|plectin	AY480034|Plec|18810|plectin	NM_201385|Plec|18810|plectin
mm9_v1_chr6_-_85452851_85452987	0.883658	NHLH1,2.p2	AK147681|Fbxo41|330369|F-box protein 41	AK147230|Fbxo41|330369|F-box protein 41	NM_001001160|Fbxo41|330369|F-box protein 41	BC070445|Fbxo41|330369|F-box protein 41
mm9_v1_chr14_+_54878898_54878980	0.883125	NHLH1,2.p2	AK152595|Abhd4|105501|abhydrolase domain containing 4	AK049366|Abhd4|105501|abhydrolase domain containing 4	AK164655|Abhd4|105501|abhydrolase domain containing 4	AK161853|Abhd4|105501|abhydrolase domain containing 4	BC017532|Abhd4|105501|abhydrolase domain containing 4	NM_134076|Abhd4|105501|abhydrolase domain containing 4
mm9_v1_chr4_-_115690263_115690388	0.881096	NHLH1,2.p2	U82536|Faah|14073|fatty acid amide hydrolase	AK032079|Faah|14073|fatty acid amide hydrolase	BC006863|Faah|14073|fatty acid amide hydrolase	AK004985|Faah|14073|fatty acid amide hydrolase	AK080603|Faah|14073|fatty acid amide hydrolase
mm9_v1_chr1_+_160292665_160292848	0.880237	NHLH1,2.p2	AK147450|Astn1|11899|astrotactin 1	AK138576|Astn1|11899|astrotactin 1	AK045561|Astn1|11899|astrotactin 1	AK165200|Astn1|11899|astrotactin 1	U48797|Astn1|11899|astrotactin 1	AB093222|Astn1|11899|astrotactin 1
mm9_v1_chr4_-_134989653_134989790	0.8801	NHLH1,2.p2	AK042201|Rcan3|53902|regulator of calcineurin 3	AK155270|Rcan3|53902|regulator of calcineurin 3	NM_022980|Rcan3|53902|regulator of calcineurin 3	AK043916|Rcan3|53902|regulator of calcineurin 3
mm9_v1_chr4_+_84530337_84530355	0.879706	NHLH1,2.p2	BC125622|Cntln|338349|centlein, centrosomal protein	BC125624|Cntln|338349|centlein, centrosomal protein
mm9_v1_chr12_-_70683972_70684096	0.875258	NHLH1,2.p2	AK144832|Gm71|207965|predicted gene 71	AK083148|Gm71|207965|predicted gene 71	NM_001033236|Gm71|207965|predicted gene 71	BC138942|Gm71|207965|predicted gene 71	BC138943|Gm71|207965|predicted gene 71	BC145471|Gm71|207965|predicted gene 71
mm9_v1_chr12_-_113146249_113146258	0.873761	NHLH1,2.p2	AK136603|Ppp1r13b|21981|protein phosphatase 1, regulatory (inhibitor) subunit 13B
mm9_v1_chr12_+_70342818_70342879	0.872466	NHLH1,2.p2	AY238938|Klhdc1|271005|kelch domain containing 1	NM_178253|Klhdc1|271005|kelch domain containing 1	BC119567|Klhdc1|271005|kelch domain containing 1	BC119568|Klhdc1|271005|kelch domain containing 1	AK144621|Klhdc1|271005|kelch domain containing 1
mm9_v1_chr3_+_97462134_97462247	0.8719	NHLH1,2.p2	BC060228|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit	NM_182997|Prkab2|108097|protein kinase, AMP-activated, beta 2 non-catalytic subunit
mm9_v1_chr2_+_124436328_124436346	0.869246	NHLH1,2.p2	AK084922|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	AK031307|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr18_-_13020671_13020801	0.868043	NHLH1,2.p2	AK185084|Osbpl1a|64291|oxysterol binding protein-like 1A	AK210503|Osbpl1a|64291|oxysterol binding protein-like 1A	AK214686|Osbpl1a|64291|oxysterol binding protein-like 1A	AK218836|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr3_-_120965803_120965917	0.865304	NHLH1,2.p2	AK147601|Tmem56|99887|transmembrane protein 56
mm9_v1_chr2_-_91550688_91550738	0.865092	NHLH1,2.p2	BC023673|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK163962|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC023712|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC033419|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK149672|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171440|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	BC016669|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	NM_145528|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK154470|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)	AK171206|Atg13|51897|ATG13 autophagy related 13 homolog (S. cerevisiae)
mm9_v1_chr6_+_55402231_55402288	0.864041	NHLH1,2.p2	AK147609|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1	D82935|Adcyap1r1|11517|adenylate cyclase activating polypeptide 1 receptor 1
mm9_v1_chr11_+_29593131_29593178	0.862584	NHLH1,2.p2	
mm9_v1_chr2_+_25356281_25356297	0.856272	NHLH1,2.p2	AK019715|Fbxw5|30839|F-box and WD-40 domain protein 5	NM_013908|Fbxw5|30839|F-box and WD-40 domain protein 5
mm9_v1_chr11_+_72832523_72832554	0.856151	NHLH1,2.p2	BC017529|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha	AF117384|Camkk1|55984|calcium/calmodulin-dependent protein kinase kinase 1, alpha
mm9_v1_chr13_+_38436987_38437005	0.855423	NHLH1,2.p2	AK041210|Bmp6|12161|bone morphogenetic protein 6
mm9_v1_chr11_+_87394609_87394632	0.854644	NHLH1,2.p2	NM_011129|Sept4|18952|septin 4	X61452|Sept4|18952|septin 4
mm9_v1_chr4_+_49072138_49072207	0.853938	NHLH1,2.p2	AK031416|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK034251|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK087439|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene	AK160897|E130309F12Rik|272031|RIKEN cDNA E130309F12 gene
mm9_v1_chr11_-_86887549_86887638	0.85224	NHLH1,2.p2	BC016541|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK011487|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK013864|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK016023|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	AK167812|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1	NM_025638|Gdpd1|66569|glycerophosphodiester phosphodiesterase domain containing 1
mm9_v1_chr7_+_3597085_3597155	0.852014	NHLH1,2.p2	BC060684|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	BC141041|Cnot3|232791|CCR4-NOT transcription complex, subunit 3	BC053437|Cnot3|232791|CCR4-NOT transcription complex, subunit 3
mm9_v1_chr15_+_39491073_39491119	0.850927	NHLH1,2.p2	AK054553|Rims2|116838|regulating synaptic membrane exocytosis 2	AK032619|Rims2|116838|regulating synaptic membrane exocytosis 2
mm9_v1_chr6_+_110595574_110595583	0.848654	NHLH1,2.p2	AK053447|Grm7|108073|glutamate receptor, metabotropic 7	AK047160|Grm7|108073|glutamate receptor, metabotropic 7	AK047733|Grm7|108073|glutamate receptor, metabotropic 7
mm9_v1_chr17_+_31194623_31194718	0.84654	NHLH1,2.p2	NM_009593|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AF323659|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	Z48745|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	U34920|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	BC119471|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1	AK037433|Abcg1|11307|ATP-binding cassette, sub-family G (WHITE), member 1
mm9_v1_chr7_-_96487247_96487305	0.846349	NHLH1,2.p2	AK013269|Tmem135|72759|transmembrane protein 135	AK028846|Tmem135|72759|transmembrane protein 135	AK047200|Tmem135|72759|transmembrane protein 135	BC033279|Tmem135|72759|transmembrane protein 135	NM_028343|Tmem135|72759|transmembrane protein 135
mm9_v1_chr14_-_73785067_73785067	0.845383	NHLH1,2.p2	AK005125|Itm2b|16432|integral membrane protein 2B	AK152731|Itm2b|16432|integral membrane protein 2B	AK159962|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr5_+_30890386_30890554	0.845104	NHLH1,2.p2	AF065162|Kcnk3|16527|potassium channel, subfamily K, member 3	BC032047|Kcnk3|16527|potassium channel, subfamily K, member 3	NM_010608|Kcnk3|16527|potassium channel, subfamily K, member 3	AB013345|Kcnk3|16527|potassium channel, subfamily K, member 3
mm9_v1_chr17_-_37160241_37160342	0.84253	NHLH1,2.p2	AK013504|Mog|17441|myelin oligodendrocyte glycoprotein	NM_010814|Mog|17441|myelin oligodendrocyte glycoprotein
mm9_v1_chr11_-_116515232_116515303	0.839975	NHLH1,2.p2	AJ315163|Cygb|114886|cytoglobin
mm9_v1_chr13_-_25029458_25029547	0.839429	NHLH1,2.p2	AK051603|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	BC138703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK159485|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK166313|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK144030|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	AK052703|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1	NM_172532|Aldh5a1|214579|aldhehyde dehydrogenase family 5, subfamily A1
mm9_v1_chr1_-_37597847_37597897	0.838762	NHLH1,2.p2	AK155724|Mgat4a|269181|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm9_v1_chr7_+_51502089_51502113	0.838666	NHLH1,2.p2	AK169789|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	NM_025880|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK036099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chr16_+_91373008_91373145	0.837699	NHLH1,2.p2	NM_001110498|Ifnar2|15976|interferon (alpha and beta) receptor 2	NM_010509|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK139169|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK010952|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK003185|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150386|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK152878|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK153317|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151474|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151777|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK151493|Ifnar2|15976|interferon (alpha and beta) receptor 2	AK150597|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09864|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09865|Ifnar2|15976|interferon (alpha and beta) receptor 2
mm9_v1_chr11_-_74403603_74403659	0.83652	NHLH1,2.p2	NM_001015046|Rap1gap2|380711|RAP1 GTPase activating protein 2
mm9_v1_chr1_-_72258684_72258880	0.836049	NHLH1,2.p2	AY628210|Mreg|381269|melanoregulin	BC068125|Mreg|381269|melanoregulin	NM_001005423|Mreg|381269|melanoregulin
mm9_v1_chr15_-_58655127_58655192	0.83521	NHLH1,2.p2	AK044939|Tmem65|74868|transmembrane protein 65
mm9_v1_chr14_+_112074336_112074336	0.834946	NHLH1,2.p2	NM_198865|Slitrk5|75409|SLIT and NTRK-like family, member 5
mm9_v1_chrX_-_159081452_159081495	0.834196	NHLH1,2.p2	BC139012|Reps2|194590|RALBP1 associated Eps domain containing protein 2	BC145500|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr14_-_65716859_65716886	0.833805	NHLH1,2.p2	
mm9_v1_chr1_-_72920776_72921027	0.833384	NHLH1,2.p2	X81583|Igfbp5|16011|insulin-like growth factor binding protein 5	BC054812|Igfbp5|16011|insulin-like growth factor binding protein 5	BC026805|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chrX_-_20194385_20194425	0.83271	NHLH1,2.p2	AK028121|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr4_+_128814102_128814307	0.831907	NHLH1,2.p2	AK005096|Fndc5|384061|fibronectin type III domain containing 5	AJ401376|Fndc5|384061|fibronectin type III domain containing 5	BC109184|Fndc5|384061|fibronectin type III domain containing 5	NM_027402|Fndc5|384061|fibronectin type III domain containing 5	BC109183|Fndc5|384061|fibronectin type III domain containing 5
mm9_v1_chr3_-_142058595_142058659	0.83118	NHLH1,2.p2	AK147999|Pdlim5|56376|PDZ and LIM domain 5	AK003194|Pdlim5|56376|PDZ and LIM domain 5	AK089779|Pdlim5|56376|PDZ and LIM domain 5	NM_001190852|Pdlim5|56376|PDZ and LIM domain 5	NM_001190853|Pdlim5|56376|PDZ and LIM domain 5	NM_001190854|Pdlim5|56376|PDZ and LIM domain 5	NM_001190855|Pdlim5|56376|PDZ and LIM domain 5	NM_001190856|Pdlim5|56376|PDZ and LIM domain 5	NM_019808|Pdlim5|56376|PDZ and LIM domain 5	NM_019809|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr5_-_145927929_145927972	0.830274	NHLH1,2.p2	AK151064|Ptcd1|71799|pentatricopeptide repeat domain 1	AK152077|Ptcd1|71799|pentatricopeptide repeat domain 1	AK153366|Ptcd1|71799|pentatricopeptide repeat domain 1	NM_133735|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr1_+_180117815_180117840	0.83008	NHLH1,2.p2	AK146492|Pppde1|78825|PPPDE peptidase domain containing 1	BC046816|Pppde1|78825|PPPDE peptidase domain containing 1
mm9_v1_chr7_-_146374392_146374419	0.826103	NHLH1,2.p2	NM_021302|Stk32c|57740|serine/threonine kinase 32C
mm9_v1_chr5_+_58110329_58110351	0.825461	NHLH1,2.p2	AK159991|Pcdh7|54216|protocadherin 7
mm9_v1_chr11_+_100870814_100870858	0.825133	NHLH1,2.p2	AK159114|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK172078|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1	AK040343|Atp6v0a1|11975|ATPase, H+ transporting, lysosomal V0 subunit A1
mm9_v1_chr5_-_76374399_76374520	0.824743	NHLH1,2.p2	X59397|Kdr|16542|kinase insert domain protein receptor	BC020530|Kdr|16542|kinase insert domain protein receptor	NM_010612|Kdr|16542|kinase insert domain protein receptor	S53103|Kdr|16542|kinase insert domain protein receptor	AK141938|Kdr|16542|kinase insert domain protein receptor	EU884114|Kdr|16542|kinase insert domain protein receptor	AK054510|Kdr|16542|kinase insert domain protein receptor
mm9_v1_chr9_+_110379461_110379473	0.824729	NHLH1,2.p2	NM_010628|Kif9|16578|kinesin family member 9
mm9_v1_chr5_-_100158034_100158083	0.823829	NHLH1,2.p2	AK048739|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK086859|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK044414|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene	AK050558|A930011G23Rik|319818|RIKEN cDNA A930011G23 gene
mm9_v1_chr11_+_70658261_70658270	0.823133	NHLH1,2.p2	AK134587|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1	NM_019400|Rabep1|54189|rabaptin, RAB GTPase binding effector protein 1
mm9_v1_chr12_-_77923303_77923517	0.823074	NHLH1,2.p2	AB232610|Rab15|104886|RAB15, member RAS oncogene family	AK158637|Rab15|104886|RAB15, member RAS oncogene family	BC013790|Rab15|104886|RAB15, member RAS oncogene family	AK158768|Rab15|104886|RAB15, member RAS oncogene family	BC027769|Rab15|104886|RAB15, member RAS oncogene family	NM_134050|Rab15|104886|RAB15, member RAS oncogene family
mm9_v1_chr15_-_38944066_38944183	0.822941	NHLH1,2.p2	AK031187|Slc25a32|69906|solute carrier family 25, member 32	AK167501|Slc25a32|69906|solute carrier family 25, member 32	BC031874|Slc25a32|69906|solute carrier family 25, member 32
mm9_v1_chr6_+_124946723_124946772	0.82184	NHLH1,2.p2	AK082984|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_175696|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr4_-_123395382_123395431	0.821453	NHLH1,2.p2	BC002163|BC002163|170658|NADH dehydrogenase Fe-S protein 5 pseudogene	AK152845|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	AK148505|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5	NM_001030274|Ndufs5|595136|NADH dehydrogenase (ubiquinone) Fe-S protein 5
mm9_v1_chr2_+_123915670_123915704	0.819287	NHLH1,2.p2	AK122515|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr1_-_133964485_133964532	0.819035	NHLH1,2.p2	AK079372|Mfsd4|213006|major facilitator superfamily domain containing 4	BC058790|Mfsd4|213006|major facilitator superfamily domain containing 4	AK044667|Mfsd4|213006|major facilitator superfamily domain containing 4	AK085484|Mfsd4|213006|major facilitator superfamily domain containing 4	BC080198|Mfsd4|213006|major facilitator superfamily domain containing 4	AK038882|Mfsd4|213006|major facilitator superfamily domain containing 4
mm9_v1_chr4_+_73659506_73659598	0.817595	NHLH1,2.p2	AK079349|Frmd3|242506|FERM domain containing 3	NM_001163732|Frmd3|242506|FERM domain containing 3	NM_172869|Frmd3|242506|FERM domain containing 3	AK034956|Frmd3|242506|FERM domain containing 3	AK048561|Frmd3|242506|FERM domain containing 3	BC118964|Frmd3|242506|FERM domain containing 3	BC112419|Frmd3|242506|FERM domain containing 3	BC113795|Frmd3|242506|FERM domain containing 3
mm9_v1_chrX_-_45388010_45388030	0.81602	NHLH1,2.p2	BC020015|Apln|30878|apelin	DQ832282|Apln|30878|apelin	NM_013912|Apln|30878|apelin	AK042076|Apln|30878|apelin
mm9_v1_chr5_-_138041861_138041972	0.815455	NHLH1,2.p2	AK019892|Mospd3|68929|motile sperm domain containing 3	AK088731|Mospd3|68929|motile sperm domain containing 3	BC003880|Mospd3|68929|motile sperm domain containing 3
mm9_v1_chr9_-_31019392_31019409	0.813862	NHLH1,2.p2	AK013376|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z27070|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK149977|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK150020|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK087459|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	AK160471|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102455|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_001102456|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	NM_009691|Aplp2|11804|amyloid beta (A4) precursor-like protein 2	Z22592|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr16_-_22657245_22657273	0.812196	NHLH1,2.p2	AK220294|Dgkg|110197|diacylglycerol kinase, gamma	AK087972|Dgkg|110197|diacylglycerol kinase, gamma	AK085470|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr1_+_187156018_187156095	0.811791	NHLH1,2.p2	AK151931|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	NM_011794|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK093938|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK008714|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK008091|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK150877|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK152009|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AK154435|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	AF125043|Bpnt1|23827|bisphosphate 3'-nucleotidase 1	BC011036|Bpnt1|23827|bisphosphate 3'-nucleotidase 1
mm9_v1_chr5_-_136646451_136646559	0.811349	NHLH1,2.p2	BC115648|Orai2|269717|ORAI calcium release-activated calcium modulator 2	BC115649|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK195764|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK215306|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK079619|Orai2|269717|ORAI calcium release-activated calcium modulator 2	BC066070|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK087038|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK036013|Orai2|269717|ORAI calcium release-activated calcium modulator 2	AK042940|Orai2|269717|ORAI calcium release-activated calcium modulator 2	NM_178751|Orai2|269717|ORAI calcium release-activated calcium modulator 2
mm9_v1_chr2_+_16277963_16277989	0.810658	NHLH1,2.p2	AK019482|Plxdc2|67448|plexin domain containing 2	AK154921|Plxdc2|67448|plexin domain containing 2
mm9_v1_chrX_+_133200913_133200976	0.810652	NHLH1,2.p2	NM_001029978|Tceal3|594844|transcription elongation factor A (SII)-like 3	AK158996|Tceal3|594844|transcription elongation factor A (SII)-like 3
mm9_v1_chr5_-_110877489_110877534	0.807603	NHLH1,2.p2	BC059932|Fbrsl1|381668|fibrosin-like 1	NM_001142642|Fbrsl1|381668|fibrosin-like 1
mm9_v1_chr10_+_116018336_116018351	0.806362	NHLH1,2.p2	AK077360|5330438D12Rik|327824|RIKEN cDNA 5330438D12 gene
mm9_v1_chr11_-_120852331_120852436	0.805896	NHLH1,2.p2	AK143534|Csnk1d|104318|casein kinase 1, delta	AK140317|Csnk1d|104318|casein kinase 1, delta	AK150387|Csnk1d|104318|casein kinase 1, delta	AK150815|Csnk1d|104318|casein kinase 1, delta	AK088642|Csnk1d|104318|casein kinase 1, delta	AK157812|Csnk1d|104318|casein kinase 1, delta	AK004606|Csnk1d|104318|casein kinase 1, delta
mm9_v1_chr7_-_51751770_51751882	0.805896	NHLH1,2.p2	AY761096|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AY761098|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	BC020179|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK150499|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK171657|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK009801|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK160274|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	AK169010|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene	NM_197991|2310044H10Rik|69683|RIKEN cDNA 2310044H10 gene
mm9_v1_chr2_-_156138199_156138439	0.805227	NHLH1,2.p2	AK220179|Scand1|19018|SCAN domain-containing 1	BC010724|Scand1|19018|SCAN domain-containing 1	AF220501|Scand1|19018|SCAN domain-containing 1	AF106473|Scand1|19018|SCAN domain-containing 1	AK088253|Scand1|19018|SCAN domain-containing 1	AK009115|Scand1|19018|SCAN domain-containing 1	NM_020255|Scand1|19018|SCAN domain-containing 1
mm9_v1_chr3_+_33699060_33699110	0.804477	NHLH1,2.p2	AK087051|Ttc14|67120|tetratricopeptide repeat domain 14	AK163444|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr18_-_6240993_6241298	0.803083	NHLH1,2.p2	AK185672|Kif5b|16573|kinesin family member 5B	AK177424|Kif5b|16573|kinesin family member 5B	L27153|Kif5b|16573|kinesin family member 5B
mm9_v1_chr7_-_17509228_17509415	0.802488	NHLH1,2.p2	AK169630|Calm3|12315|calmodulin 3	BC050926|Calm3|12315|calmodulin 3	M19380|Calm3|12315|calmodulin 3	AK165568|Calm3|12315|calmodulin 3	AK153179|Calm3|12315|calmodulin 3	AK152754|Calm3|12315|calmodulin 3	AK151610|Calm3|12315|calmodulin 3	NM_007590|Calm3|12315|calmodulin 3
mm9_v1_chr1_+_20880682_20880687	0.800682	NHLH1,2.p2	AK029772|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr1_-_133141708_133141776	0.800088	NHLH1,2.p2	AF053959|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK005059|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK155534|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	AK029321|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	BC089605|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5	NM_018750|Rassf5|54354|Ras association (RalGDS/AF-6) domain family member 5
mm9_v1_chr9_-_41932195_41932209	0.799937	NHLH1,2.p2	AB015790|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr3_-_32515388_32515511	0.799342	NHLH1,2.p2	AK098139|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK168302|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	BC028753|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK158965|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK172147|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK152227|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK165084|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK169752|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK044119|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK036816|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	NM_013531|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK167416|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4	AK155309|Gnb4|14696|guanine nucleotide binding protein (G protein), beta 4
mm9_v1_chr5_-_92707164_92707208	0.798895	NHLH1,2.p2	AB162194|Naaa|67111|N-acylethanolamine acid amidase	BC004572|Naaa|67111|N-acylethanolamine acid amidase	AK014438|Naaa|67111|N-acylethanolamine acid amidase	AK017141|Naaa|67111|N-acylethanolamine acid amidase	AK133485|Naaa|67111|N-acylethanolamine acid amidase	AK146191|Naaa|67111|N-acylethanolamine acid amidase	AK008776|Naaa|67111|N-acylethanolamine acid amidase	AK133658|Naaa|67111|N-acylethanolamine acid amidase	NM_001163687|Naaa|67111|N-acylethanolamine acid amidase	NM_025972|Naaa|67111|N-acylethanolamine acid amidase
mm9_v1_chr13_-_69878721_69878801	0.797146	NHLH1,2.p2	NM_001145162|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr11_-_79317583_79317590	0.796846	NHLH1,2.p2	NM_019409|Omg|18377|oligodendrocyte myelin glycoprotein	AK136910|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr16_-_31314534_31314685	0.796652	NHLH1,2.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chr2_+_154483045_154483087	0.79549	NHLH1,2.p2	BC006905|Chmp4b|75608|chromatin modifying protein 4B
mm9_v1_chr7_+_116094153_116094278	0.795287	NHLH1,2.p2	AK158865|BC049265|414075|cDNA sequence BC049265	BC030475|BC049265|414075|cDNA sequence BC049265	BC049265|BC049265|414075|cDNA sequence BC049265
mm9_v1_chr13_-_100286521_100286556	0.793532	NHLH1,2.p2	NM_008634|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr16_-_8425201_8425228	0.79312	NHLH1,2.p2	BC027071|Tmem114|74720|transmembrane protein 114	AK015757|Tmem114|74720|transmembrane protein 114	NM_029070|Tmem114|74720|transmembrane protein 114
mm9_v1_chr18_+_38456280_38456312	0.792168	NHLH1,2.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chr16_+_8470854_8470905	0.790911	NHLH1,2.p2	AK136614|BC024814|239706|cDNA sequence BC024814	AK089212|BC024814|239706|cDNA sequence BC024814	BC024814|BC024814|239706|cDNA sequence BC024814	NM_146247|BC024814|239706|cDNA sequence BC024814
mm9_v1_chr9_+_59598963_59599005	0.789846	NHLH1,2.p2	NM_173018|Myo9a|270163|myosin IXa	AK048681|Myo9a|270163|myosin IXa
mm9_v1_chr2_+_18594027_18594125	0.787705	NHLH1,2.p2	AK145999|Commd3|12238|COMM domain containing 3	AK145955|Commd3|12238|COMM domain containing 3	BC038077|Commd3|12238|COMM domain containing 3	BC048815|Commd3|12238|COMM domain containing 3	AK007318|Commd3|12238|COMM domain containing 3	AK041634|Commd3|12238|COMM domain containing 3	NM_147778|Commd3|12238|COMM domain containing 3
mm9_v1_chr2_+_155102040_155102281	0.784484	NHLH1,2.p2	AK015020|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	NM_025735|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003122|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	AK003716|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha	BC010596|Map1lc3a|66734|microtubule-associated protein 1 light chain 3 alpha
mm9_v1_chr12_-_86217386_86217481	0.784126	NHLH1,2.p2	BC119785|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AK052980|Ltbp2|16997|latent transforming growth factor beta binding protein 2	NM_013589|Ltbp2|16997|latent transforming growth factor beta binding protein 2	AF004874|Ltbp2|16997|latent transforming growth factor beta binding protein 2
mm9_v1_chr14_-_32249046_32249246	0.783673	NHLH1,2.p2	AB016835|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	BC053741|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)	NM_011894|Sh3bp5|24056|SH3-domain binding protein 5 (BTK-associated)
mm9_v1_chr11_+_94072732_94072796	0.780812	NHLH1,2.p2	AK142667|Tob1|22057|transducer of ErbB-2.1	BC082588|Tob1|22057|transducer of ErbB-2.1	NM_009427|Tob1|22057|transducer of ErbB-2.1
mm9_v1_chr7_-_52230091_52230104	0.780201	NHLH1,2.p2	AK087747|Cpt1c|78070|carnitine palmitoyltransferase 1c	BC083317|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr13_-_52626022_52626049	0.780118	NHLH1,2.p2	BC086799|Diras2|68203|DIRAS family, GTP-binding RAS-like 2
mm9_v1_chr13_-_104899571_104899748	0.778984	NHLH1,2.p2	AK146364|Nln|75805|neurolysin (metallopeptidase M3 family)	BC016224|Nln|75805|neurolysin (metallopeptidase M3 family)	AK138399|Nln|75805|neurolysin (metallopeptidase M3 family)	AK170508|Nln|75805|neurolysin (metallopeptidase M3 family)	AK171432|Nln|75805|neurolysin (metallopeptidase M3 family)	AK079090|Nln|75805|neurolysin (metallopeptidase M3 family)	NM_029447|Nln|75805|neurolysin (metallopeptidase M3 family)
mm9_v1_chr4_-_41261743_41261803	0.778866	NHLH1,2.p2	AK173289|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr1_-_173164404_173164481	0.778773	NHLH1,2.p2	J05020|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide	BC034163|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide	AK155600|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide	NM_010185|Fcer1g|14127|Fc receptor, IgE, high affinity I, gamma polypeptide
mm9_v1_chr4_+_135476603_135476713	0.777531	NHLH1,2.p2	NM_024243|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK150890|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151361|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151879|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK170503|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK020610|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK002230|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK089958|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151258|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK165604|Fuca1|71665|fucosidase, alpha-L- 1, tissue	BC003235|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK053323|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK151908|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK152070|Fuca1|71665|fucosidase, alpha-L- 1, tissue	AK150526|Fuca1|71665|fucosidase, alpha-L- 1, tissue
mm9_v1_chrX_-_91077290_91077385	0.77721	NHLH1,2.p2	CT010338|Pdk3|236900|pyruvate dehydrogenase kinase, isoenzyme 3
mm9_v1_chr4_-_119165183_119165252	0.777153	NHLH1,2.p2	BC057371|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK163360|Rimkla|194237|ribosomal modification protein rimK-like family member A	AK047164|Rimkla|194237|ribosomal modification protein rimK-like family member A	NM_177572|Rimkla|194237|ribosomal modification protein rimK-like family member A
mm9_v1_chr6_-_23789048_23789235	0.775108	NHLH1,2.p2	AF000969|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	BC047394|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AY072800|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AK038568|Cadps2|320405|Ca2+-dependent activator protein for secretion 2	AB291947|Cadps2|320405|Ca2+-dependent activator protein for secretion 2
mm9_v1_chr19_+_12040311_12040373	0.774972	NHLH1,2.p2	NM_001033174|Osbp|76303|oxysterol binding protein
mm9_v1_chr2_+_181255209_181255262	0.774611	NHLH1,2.p2	NM_016775|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK083584|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK007879|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK029006|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	AK032373|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5	BC018231|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr4_+_125939573_125939621	0.774024	NHLH1,2.p2	AK168518|Trappc3|27096|trafficking protein particle complex 3
mm9_v1_chr7_-_4741145_4741257	0.773681	NHLH1,2.p2	AK008900|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	NM_029384|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	BC132101|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene	BC144965|2210411K11Rik|664968|RIKEN cDNA 2210411K11 gene
mm9_v1_chr1_+_20880692_20880724	0.773613	NHLH1,2.p2	AK147376|Paqr8|74229|progestin and adipoQ receptor family member VIII	BC059813|Paqr8|74229|progestin and adipoQ receptor family member VIII	NM_028829|Paqr8|74229|progestin and adipoQ receptor family member VIII
mm9_v1_chr8_-_127187268_127187334	0.77273	NHLH1,2.p2	BC058626|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene	NM_175149|2310022B05Rik|69551|RIKEN cDNA 2310022B05 gene
mm9_v1_chr9_-_62384766_62384790	0.772122	NHLH1,2.p2	AK047330|Coro2b|235431|coronin, actin binding protein, 2B	AK047527|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr13_+_93381086_93381215	0.771953	NHLH1,2.p2	AK165334|Serinc5|218442|serine incorporator 5	BC049189|Serinc5|218442|serine incorporator 5	BC062131|Serinc5|218442|serine incorporator 5	NM_172588|Serinc5|218442|serine incorporator 5	AK037699|Serinc5|218442|serine incorporator 5	AK163675|Serinc5|218442|serine incorporator 5	AB029501|Serinc5|218442|serine incorporator 5
mm9_v1_chr14_+_22569752_22569797	0.769759	NHLH1,2.p2	AK006211|Samd8|67630|sterile alpha motif domain containing 8	NM_026283|Samd8|67630|sterile alpha motif domain containing 8	BC116745|Samd8|67630|sterile alpha motif domain containing 8	BC116747|Samd8|67630|sterile alpha motif domain containing 8	AK015593|Samd8|67630|sterile alpha motif domain containing 8	BC100476|Samd8|67630|sterile alpha motif domain containing 8
mm9_v1_chr9_+_68501551_68501608	0.76739	NHLH1,2.p2	AK086033|Rora|19883|RAR-related orphan receptor alpha	NM_013646|Rora|19883|RAR-related orphan receptor alpha	U53228|Rora|19883|RAR-related orphan receptor alpha
mm9_v1_chr2_+_163820857_163820914	0.767228	NHLH1,2.p2	AK144061|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK002632|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr19_-_7061958_7062092	0.767002	NHLH1,2.p2	U48800|Vegfb|22340|vascular endothelial growth factor B	U52820|Vegfb|22340|vascular endothelial growth factor B	U43836|Vegfb|22340|vascular endothelial growth factor B
mm9_v1_chr5_+_32761471_32761527	0.765854	NHLH1,2.p2	AK171283|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK089067|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr5_+_123157541_123157662	0.765044	NHLH1,2.p2	NM_011026|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK150351|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK041904|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK163104|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK162498|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	BC002099|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK162820|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	BC005597|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AK153427|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AF089751|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AF089752|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251459|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251460|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251461|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4	AJ251462|P2rx4|18438|purinergic receptor P2X, ligand-gated ion channel 4
mm9_v1_chr11_+_87394543_87394570	0.763411	NHLH1,2.p2	AK135143|Sept4|18952|septin 4	BC055101|Sept4|18952|septin 4	BC037673|Sept4|18952|septin 4
mm9_v1_chr8_-_127421561_127421610	0.763326	NHLH1,2.p2	BC057052|Exoc8|102058|exocyst complex component 8	NM_198103|Exoc8|102058|exocyst complex component 8
mm9_v1_chr10_+_57514349_57514589	0.763222	NHLH1,2.p2	NM_020561|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	Y08135|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK002455|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK152282|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139288|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	BC139289|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A	AK151683|Smpdl3a|57319|sphingomyelin phosphodiesterase, acid-like 3A
mm9_v1_chr15_+_98465328_98465599	0.761741	NHLH1,2.p2	U20372|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498245|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit	AF498246|Cacnb3|12297|calcium channel, voltage-dependent, beta 3 subunit
mm9_v1_chr14_+_21895346_21895378	0.760661	NHLH1,2.p2	AK151863|Adk|11534|adenosine kinase
mm9_v1_chr15_+_66409094_66409201	0.759673	NHLH1,2.p2	AK047044|Phf20l1|239510|PHD finger protein 20-like 1	AK032638|Phf20l1|239510|PHD finger protein 20-like 1	NM_001081409|Phf20l1|239510|PHD finger protein 20-like 1	BC082777|Phf20l1|239510|PHD finger protein 20-like 1	BC052212|Phf20l1|239510|PHD finger protein 20-like 1	BC061492|Phf20l1|239510|PHD finger protein 20-like 1
mm9_v1_chr17_-_63849928_63849928	0.759277	NHLH1,2.p2	NM_015794|Fbxl17|50758|F-box and leucine-rich repeat protein 17
mm9_v1_chr12_+_52694307_52694441	0.757221	NHLH1,2.p2	AK137336|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	NM_001198835|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	NM_007728|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AF006741|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AK171875|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AK156430|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	BC045137|Coch|12810|coagulation factor C homolog (Limulus polyphemus)	AK028690|Coch|12810|coagulation factor C homolog (Limulus polyphemus)
mm9_v1_chr2_+_32442620_32442737	0.755391	NHLH1,2.p2	AK153036|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC044734|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	AK179544|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm9_v1_chr9_-_45714959_45715007	0.753712	NHLH1,2.p2	AK051527|Rnf214|235315|ring finger protein 214	NM_178709|Rnf214|235315|ring finger protein 214	AK046997|Rnf214|235315|ring finger protein 214	AK030208|Rnf214|235315|ring finger protein 214
mm9_v1_chr10_+_79167102_79167137	0.753406	NHLH1,2.p2	NM_001077184|Bsg|12215|basigin	NM_009768|Bsg|12215|basigin
mm9_v1_chr19_+_23215725_23215754	0.752164	NHLH1,2.p2	BC106117|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr12_+_114214654_114214807	0.751982	NHLH1,2.p2	NM_001145900|Btbd6|399566|BTB (POZ) domain containing 6	BC031195|Btbd6|399566|BTB (POZ) domain containing 6	NM_201646|Btbd6|399566|BTB (POZ) domain containing 6
mm9_v1_chr18_-_80904852_80904931	0.75111	NHLH1,2.p2	EU887569|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	EU887571|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	EU887572|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AF049606|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	AK004810|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164111|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_001164112|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1	NM_016791|Nfatc1|18018|nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1
mm9_v1_chr3_+_141128527_141128634	0.751034	NHLH1,2.p2	NM_009472|Unc5c|22253|unc-5 homolog C (C. elegans)	U72634|Unc5c|22253|unc-5 homolog C (C. elegans)	BC115772|Unc5c|22253|unc-5 homolog C (C. elegans)	AK031655|Unc5c|22253|unc-5 homolog C (C. elegans)	AK034558|Unc5c|22253|unc-5 homolog C (C. elegans)	AK035038|Unc5c|22253|unc-5 homolog C (C. elegans)	AK045251|Unc5c|22253|unc-5 homolog C (C. elegans)	AK141181|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142411|Unc5c|22253|unc-5 homolog C (C. elegans)	AK164239|Unc5c|22253|unc-5 homolog C (C. elegans)	AK142974|Unc5c|22253|unc-5 homolog C (C. elegans)
mm9_v1_chr17_-_24342446_24342565	0.75053	NHLH1,2.p2	AK036088|Tbc1d24|224617|TBC1 domain family, member 24	AK129304|Tbc1d24|224617|TBC1 domain family, member 24	AK084693|Tbc1d24|224617|TBC1 domain family, member 24	AK086293|Tbc1d24|224617|TBC1 domain family, member 24	AK138431|Tbc1d24|224617|TBC1 domain family, member 24	AK045194|Tbc1d24|224617|TBC1 domain family, member 24	AK083833|Tbc1d24|224617|TBC1 domain family, member 24	AK049754|Tbc1d24|224617|TBC1 domain family, member 24	AK147647|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163847|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163848|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163849|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163850|Tbc1d24|224617|TBC1 domain family, member 24	NM_001163851|Tbc1d24|224617|TBC1 domain family, member 24	NM_173186|Tbc1d24|224617|TBC1 domain family, member 24	AK172594|Ntn3|18209|netrin 3
mm9_v1_chr11_+_101107726_101107744	0.749855	NHLH1,2.p2	AK003810|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AF146523|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC051201|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	BC069992|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AJ250490|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr17_+_68623136_68623166	0.749288	NHLH1,2.p2	AK053068|L3mbtl4|320858|l(3)mbt-like 4 (Drosophila)	NM_177278|L3mbtl4|320858|l(3)mbt-like 4 (Drosophila)	AK039470|L3mbtl4|320858|l(3)mbt-like 4 (Drosophila)
mm9_v1_chr9_-_58049521_58049605	0.74855	NHLH1,2.p2	BC096531|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161535|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161537|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2	NM_001161540|Islr2|320563|immunoglobulin superfamily containing leucine-rich repeat 2
mm9_v1_chr6_-_82889694_82889743	0.748201	NHLH1,2.p2	AB021291|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC057048|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC090625|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK047067|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC094567|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK035993|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	AK143196|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_001113481|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	NM_011350|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr9_-_86775488_86775559	0.746031	NHLH1,2.p2	AK051176|Snap91|20616|synaptosomal-associated protein 91
mm9_v1_chr10_+_81096440_81096463	0.745507	NHLH1,2.p2	AK043638|Ankrd24|70615|ankyrin repeat domain 24	AK173316|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr5_-_65884169_65884184	0.745017	NHLH1,2.p2	AK044669|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene
mm9_v1_chr1_-_99873641_99873694	0.744708	NHLH1,2.p2	AK049423|Pam|18484|peptidylglycine alpha-amidating monooxygenase
mm9_v1_chr7_-_148513566_148513623	0.742787	NHLH1,2.p2	AK155836|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)	NM_016874|Deaf1|54006|deformed epidermal autoregulatory factor 1 (Drosophila)
mm9_v1_chr12_-_42212538_42212554	0.741581	NHLH1,2.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr11_+_59476016_59476061	0.740336	NHLH1,2.p2	BC063067|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr7_-_140968355_140968494	0.738787	NHLH1,2.p2	AK079184|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32	AK167889|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32	AK172504|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32	AK169005|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32	AK033624|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32	AY065980|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32	NM_133941|Dhx32|101437|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm9_v1_chr2_+_157740281_157740500	0.73849	NHLH1,2.p2	NM_198627|Vstm2l|277432|V-set and transmembrane domain containing 2-like	BC058538|Vstm2l|277432|V-set and transmembrane domain containing 2-like
mm9_v1_chr18_-_13021181_13021221	0.736848	NHLH1,2.p2	AK168366|Osbpl1a|64291|oxysterol binding protein-like 1A	BC092247|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr2_-_167486889_167487105	0.735206	NHLH1,2.p2	AK151326|Tmem189|407243|transmembrane protein 189	BC002270|Tmem189|407243|transmembrane protein 189	NM_145538|Tmem189|407243|transmembrane protein 189	AK151705|Tmem189|407243|transmembrane protein 189	AK170042|Tmem189|407243|transmembrane protein 189	AK088196|Tmem189|407243|transmembrane protein 189
mm9_v1_chr17_-_33918382_33918492	0.734503	NHLH1,2.p2	AF169313|Angptl4|57875|angiopoietin-like 4	AB054540|Angptl4|57875|angiopoietin-like 4	AF123261|Angptl4|57875|angiopoietin-like 4	AF278699|Angptl4|57875|angiopoietin-like 4	BC025797|Angptl4|57875|angiopoietin-like 4	BC006611|Angptl4|57875|angiopoietin-like 4	BC021343|Angptl4|57875|angiopoietin-like 4	AK032491|Angptl4|57875|angiopoietin-like 4	AK132761|Angptl4|57875|angiopoietin-like 4	AK134419|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr16_+_94791596_94791654	0.734053	NHLH1,2.p2	AK140323|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr2_+_92439758_92439886	0.732997	NHLH1,2.p2	NM_023850|Chst1|76969|carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
mm9_v1_chr12_-_88541151_88541189	0.732777	NHLH1,2.p2	AK147378|Tmed8|382620|transmembrane emp24 domain containing 8	NM_001033475|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr7_-_26022753_26022882	0.732694	NHLH1,2.p2	NM_001031667|Gsk3a|606496|glycogen synthase kinase 3 alpha
mm9_v1_chr19_-_59018112_59018143	0.731916	NHLH1,2.p2	AK076683|Hspa12a|73442|heat shock protein 12A	AK076668|Hspa12a|73442|heat shock protein 12A	AK087732|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr11_+_105898183_105898284	0.731878	NHLH1,2.p2	AK047435|Dcaf7|71833|DDB1 and CUL4 associated factor 7	NM_027946|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK005902|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK154757|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK165674|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK080823|Dcaf7|71833|DDB1 and CUL4 associated factor 7	AK137813|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048722|Dcaf7|71833|DDB1 and CUL4 associated factor 7	BC048165|Dcaf7|71833|DDB1 and CUL4 associated factor 7
mm9_v1_chr11_+_22872062_22872100	0.73164	NHLH1,2.p2	AK165562|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
mm9_v1_chr1_+_7079042_7079277	0.731377	NHLH1,2.p2	AK079468|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166166|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168705|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC110360|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK134223|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK168606|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	BC019193|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK187882|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK040848|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK145008|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	AK166593|Pcmtd1|319263|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm9_v1_chr2_-_33226980_33226997	0.730457	NHLH1,2.p2	AK129123|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK017939|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	AK076767|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1	NM_175211|Ralgps1|241308|Ral GEF with PH domain and SH3 binding motif 1
mm9_v1_chr3_-_57651621_57651757	0.729922	NHLH1,2.p2	NM_019410|Pfn2|18645|profilin 2
mm9_v1_chr4_+_144482722_144482729	0.72909	NHLH1,2.p2	BC008980|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3	NM_001172424|Dhrs3|20148|dehydrogenase/reductase (SDR family) member 3
mm9_v1_chr9_-_75458918_75458929	0.728376	NHLH1,2.p2	AK018223|Tmod2|50876|tropomodulin 2
mm9_v1_chr12_+_75098739_75098790	0.72812	NHLH1,2.p2	AK137129|Syt16|238266|synaptotagmin XVI	AK032606|Syt16|238266|synaptotagmin XVI	NM_172804|Syt16|238266|synaptotagmin XVI
mm9_v1_chr2_+_164311639_164311740	0.727007	NHLH1,2.p2	NM_001048227|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr18_-_14131046_14131241	0.726283	NHLH1,2.p2	BC021376|Zfp521|225207|zinc finger protein 521	AK052655|Zfp521|225207|zinc finger protein 521	AY147406|Zfp521|225207|zinc finger protein 521	NM_145492|Zfp521|225207|zinc finger protein 521
mm9_v1_chr11_-_5641147_5641184	0.724737	NHLH1,2.p2	AK166495|Urgcp|72046|upregulator of cell proliferation	AK033577|Urgcp|72046|upregulator of cell proliferation	NM_178623|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr16_+_31428833_31428879	0.724423	NHLH1,2.p2	AK146321|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK145711|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	NM_001122683|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1	AK146962|Bdh1|71911|3-hydroxybutyrate dehydrogenase, type 1
mm9_v1_chr8_-_41720091_41720170	0.724371	NHLH1,2.p2	AK028160|Mtmr7|54384|myotubularin related protein 7	AK081973|Mtmr7|54384|myotubularin related protein 7	BC032254|Mtmr7|54384|myotubularin related protein 7	AK148768|Mtmr7|54384|myotubularin related protein 7	NM_001040699|Mtmr7|54384|myotubularin related protein 7
mm9_v1_chr19_+_53403902_53404133	0.724163	NHLH1,2.p2	NM_010847|Mxi1|17859|Max interacting protein 1	AK144219|Mxi1|17859|Max interacting protein 1	AK017637|Mxi1|17859|Max interacting protein 1	AK140465|Mxi1|17859|Max interacting protein 1	L38822|Mxi1|17859|Max interacting protein 1	U24674|Mxi1|17859|Max interacting protein 1
mm9_v1_chr11_-_116515361_116515394	0.723942	NHLH1,2.p2	AK172475|Cygb|114886|cytoglobin	AK163073|Cygb|114886|cytoglobin
mm9_v1_chr5_+_102194207_102194308	0.722383	NHLH1,2.p2	AF533367|Cds1|74596|CDP-diacylglycerol synthase 1
mm9_v1_chr9_+_64233432_64233531	0.721763	NHLH1,2.p2	NM_001134399|Megf11|214058|multiple EGF-like-domains 11	NM_172522|Megf11|214058|multiple EGF-like-domains 11	AK048840|Megf11|214058|multiple EGF-like-domains 11	AK122555|Megf11|214058|multiple EGF-like-domains 11	AK051642|Megf11|214058|multiple EGF-like-domains 11	BC151157|Megf11|214058|multiple EGF-like-domains 11	BC172024|Megf11|214058|multiple EGF-like-domains 11
mm9_v1_chr4_+_103292164_103292269	0.71991	NHLH1,2.p2	BC051993|Dab1|13131|disabled homolog 1 (Drosophila)
mm9_v1_chr11_-_115229039_115229044	0.719689	NHLH1,2.p2	AK138882|C630004H02Rik|217310|RIKEN cDNA C630004H02 gene
mm9_v1_chr1_-_121733923_121733951	0.718619	NHLH1,2.p2	AK046683|Ptpn4|19258|protein tyrosine phosphatase, non-receptor type 4
mm9_v1_chr9_-_58160966_58161035	0.716532	NHLH1,2.p2	BC098243|Loxl1|16949|lysyl oxidase-like 1	BC037999|Loxl1|16949|lysyl oxidase-like 1	AK078512|Loxl1|16949|lysyl oxidase-like 1	NM_010729|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr8_-_67171805_67171871	0.716507	NHLH1,2.p2	AK047891|Cpe|12876|carboxypeptidase E	BC010197|Cpe|12876|carboxypeptidase E	NM_013494|Cpe|12876|carboxypeptidase E	AK160097|Cpe|12876|carboxypeptidase E
mm9_v1_chr11_-_109583524_109583607	0.716186	NHLH1,2.p2	BC029169|Fam20a|208659|family with sequence similarity 20, member A	NM_153782|Fam20a|208659|family with sequence similarity 20, member A	AK142932|Fam20a|208659|family with sequence similarity 20, member A
mm9_v1_chr4_-_35792385_35792444	0.715871	NHLH1,2.p2	BC137866|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC144985|Lingo2|242384|leucine rich repeat and Ig domain containing 2	BC145692|Lingo2|242384|leucine rich repeat and Ig domain containing 2	AK045639|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_001166001|Lingo2|242384|leucine rich repeat and Ig domain containing 2	NM_175516|Lingo2|242384|leucine rich repeat and Ig domain containing 2
mm9_v1_chr8_-_128422192_128422192	0.715281	NHLH1,2.p2	BC068235|Pcnxl2|270109|pecanex-like 2 (Drosophila)	NM_175561|Pcnxl2|270109|pecanex-like 2 (Drosophila)
mm9_v1_chr15_-_98593505_98593647	0.714952	NHLH1,2.p2	D87900|Arf3|11842|ADP-ribosylation factor 3	BC014778|Arf3|11842|ADP-ribosylation factor 3	NM_007478|Arf3|11842|ADP-ribosylation factor 3	AK171354|Arf3|11842|ADP-ribosylation factor 3	BC024935|Arf3|11842|ADP-ribosylation factor 3	AK154948|Arf3|11842|ADP-ribosylation factor 3	AK165176|Arf3|11842|ADP-ribosylation factor 3	AK151296|Arf3|11842|ADP-ribosylation factor 3
mm9_v1_chr19_-_10379361_10379369	0.713163	NHLH1,2.p2	NM_198114|Dagla|269060|diacylglycerol lipase, alpha
mm9_v1_chr1_+_36569141_36569293	0.712958	NHLH1,2.p2	BC080275|Cnnm3|94218|cyclin M3
mm9_v1_chr9_-_41932371_41932387	0.71081	NHLH1,2.p2	AK147303|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing	NM_011436|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr18_+_36440748_36440822	0.71077	NHLH1,2.p2	NM_008989|Pura|19290|purine rich element binding protein A	U02098|Pura|19290|purine rich element binding protein A
mm9_v1_chr15_-_86016070_86016205	0.710473	NHLH1,2.p2	AB079067|Cerk|223753|ceramide kinase	AK169528|Cerk|223753|ceramide kinase	AK042077|Cerk|223753|ceramide kinase
mm9_v1_chr1_-_95532242_95532249	0.710278	NHLH1,2.p2	AK152917|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr4_-_154417257_154417310	0.708659	NHLH1,2.p2	AK049970|Plch2|269615|phospholipase C, eta 2
mm9_v1_chr17_-_79754427_79754441	0.708382	NHLH1,2.p2	AK014281|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	AK019447|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	NM_026514|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3
mm9_v1_chr19_+_60832080_60832311	0.708282	NHLH1,2.p2	AK139148|Nanos1|332397|nanos homolog 1 (Drosophila)	BC056473|Nanos1|332397|nanos homolog 1 (Drosophila)	AK046189|Nanos1|332397|nanos homolog 1 (Drosophila)	AB095029|Nanos1|332397|nanos homolog 1 (Drosophila)
mm9_v1_chr17_-_27341343_27341419	0.707902	NHLH1,2.p2	AY640307|Lemd2|224640|LEM domain containing 2	AK143224|Lemd2|224640|LEM domain containing 2	NM_146075|Lemd2|224640|LEM domain containing 2
mm9_v1_chr2_+_132607398_132607407	0.707168	NHLH1,2.p2	AK133786|Chgb|12653|chromogranin B	AK019893|Chgb|12653|chromogranin B	AK044172|Chgb|12653|chromogranin B	AK077489|Chgb|12653|chromogranin B	AK133629|Chgb|12653|chromogranin B	AK133739|Chgb|12653|chromogranin B	X53028|Chgb|12653|chromogranin B
mm9_v1_chr2_-_181194085_181194141	0.707141	NHLH1,2.p2	BC058179|Zbtb46|72147|zinc finger and BTB domain containing 46	AK155148|Zbtb46|72147|zinc finger and BTB domain containing 46	AK011461|Zbtb46|72147|zinc finger and BTB domain containing 46	AK085310|Zbtb46|72147|zinc finger and BTB domain containing 46	NM_028125|Zbtb46|72147|zinc finger and BTB domain containing 46
mm9_v1_chr2_-_148701126_148701154	0.706597	NHLH1,2.p2	M59470|Cst3|13010|cystatin C	BC002072|Cst3|13010|cystatin C
mm9_v1_chr2_+_35477498_35477550	0.706473	NHLH1,2.p2	AK147593|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	NM_001114124|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr5_-_115140869_115140951	0.70576	NHLH1,2.p2	AF209703|Gltp|56356|glycolipid transfer protein	BC053729|Gltp|56356|glycolipid transfer protein	AK157313|Gltp|56356|glycolipid transfer protein	BC016584|Gltp|56356|glycolipid transfer protein	NM_019821|Gltp|56356|glycolipid transfer protein
mm9_v1_chr6_+_72047563_72047686	0.705105	NHLH1,2.p2	AK165726|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_001035228|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	NM_011375|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AF119416|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK159000|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AK012961|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	AB018048|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138557|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5	BC138559|St3gal5|20454|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm9_v1_chr14_-_119498586_119498663	0.701968	NHLH1,2.p2	AK038817|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK052077|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	NM_001081252|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2	AK048685|Uggt2|66435|UDP-glucose glycoprotein glucosyltransferase 2
mm9_v1_chr9_+_103904873_103905103	0.701938	NHLH1,2.p2	AK133217|Nphp3|74025|nephronophthisis 3 (adolescent)	NM_028721|Nphp3|74025|nephronophthisis 3 (adolescent)	NM_172460|Nphp3|74025|nephronophthisis 3 (adolescent)	AY259499|Nphp3|74025|nephronophthisis 3 (adolescent)	BC115724|Nphp3|74025|nephronophthisis 3 (adolescent)	AK052281|Nphp3|74025|nephronophthisis 3 (adolescent)	AK048877|Nphp3|74025|nephronophthisis 3 (adolescent)
mm9_v1_chr7_-_148196606_148196633	0.701707	NHLH1,2.p2	AK151890|Ifitm3|66141|interferon induced transmembrane protein 3	AY082484|Ifitm3|66141|interferon induced transmembrane protein 3	AK007919|Ifitm3|66141|interferon induced transmembrane protein 3
mm9_v1_chr11_+_88860710_88860807	0.701043	NHLH1,2.p2	AK169562|Trim25|217069|tripartite motif-containing 25	NM_009546|Trim25|217069|tripartite motif-containing 25	AK154533|Trim25|217069|tripartite motif-containing 25	BC006908|Trim25|217069|tripartite motif-containing 25	BC034276|Trim25|217069|tripartite motif-containing 25	AK160898|Trim25|217069|tripartite motif-containing 25	AK172555|Trim25|217069|tripartite motif-containing 25	D63902|Trim25|217069|tripartite motif-containing 25
mm9_v1_chr11_-_88921858_88922026	0.700782	NHLH1,2.p2	AK049335|Dgke|56077|diacylglycerol kinase, epsilon	BC055867|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr1_+_163072784_163072870	0.700463	NHLH1,2.p2	AK016757|Ankrd45|73844|ankyrin repeat domain 45	NM_028664|Ankrd45|73844|ankyrin repeat domain 45	BC049713|Ankrd45|73844|ankyrin repeat domain 45
mm9_v1_chr4_-_138748586_138748605	0.700059	NHLH1,2.p2	AK020648|9530077C14Rik|78454|RIKEN cDNA 9530077C14 gene
mm9_v1_chr4_+_151712914_151712995	0.699982	NHLH1,2.p2	AK015949|Chd5|269610|chromodomain helicase DNA binding protein 5
mm9_v1_chr7_-_36340213_36340340	0.699113	NHLH1,2.p2	AK179860|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	AK183336|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr11_-_69651218_69651315	0.698786	NHLH1,2.p2	AK136883|Nlgn2|216856|neuroligin 2
mm9_v1_chr3_+_51287887_51287937	0.698145	NHLH1,2.p2	BC065076|Rab33b|19338|RAB33B, member of RAS oncogene family	NM_016858|Rab33b|19338|RAB33B, member of RAS oncogene family	AK163783|Rab33b|19338|RAB33B, member of RAS oncogene family	AK139821|Rab33b|19338|RAB33B, member of RAS oncogene family	AB004665|Rab33b|19338|RAB33B, member of RAS oncogene family
mm9_v1_chr1_+_36568707_36568722	0.696569	NHLH1,2.p2	NM_001039551|Cnnm3|94218|cyclin M3	NM_053186|Cnnm3|94218|cyclin M3
mm9_v1_chr7_-_30980042_30980100	0.69207	NHLH1,2.p2	AF058298|Capns1|12336|calpain, small subunit 1	BC018352|Capns1|12336|calpain, small subunit 1	BC090988|Capns1|12336|calpain, small subunit 1	NM_009795|Capns1|12336|calpain, small subunit 1
mm9_v1_chr3_-_107563049_107563194	0.692014	NHLH1,2.p2	M21149|Csf1|12977|colony stimulating factor 1 (macrophage)	M15692|Csf1|12977|colony stimulating factor 1 (macrophage)	AK170154|Csf1|12977|colony stimulating factor 1 (macrophage)	M21952|Csf1|12977|colony stimulating factor 1 (macrophage)	S78392|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066187|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066200|Csf1|12977|colony stimulating factor 1 (macrophage)	BC066205|Csf1|12977|colony stimulating factor 1 (macrophage)	X05010|Csf1|12977|colony stimulating factor 1 (macrophage)	AK136808|Csf1|12977|colony stimulating factor 1 (macrophage)	AK138489|Csf1|12977|colony stimulating factor 1 (macrophage)	AK154872|Csf1|12977|colony stimulating factor 1 (macrophage)	AK160995|Csf1|12977|colony stimulating factor 1 (macrophage)	AK166370|Csf1|12977|colony stimulating factor 1 (macrophage)
mm9_v1_chr14_-_24823370_24823426	0.691145	NHLH1,2.p2	AK142894|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	BC065068|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1	NM_010610|Kcnma1|16531|potassium large conductance calcium-activated channel, subfamily M, alpha member 1
mm9_v1_chr13_-_51889012_51889103	0.690794	NHLH1,2.p2	BC049780|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	NM_013660|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	AK132688|Sema4d|20354|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm9_v1_chr5_+_122841885_122841976	0.69043	NHLH1,2.p2	AK003485|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK005437|Arpc3|56378|actin related protein 2/3 complex, subunit 3	AK171651|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC013618|Arpc3|56378|actin related protein 2/3 complex, subunit 3	NM_019824|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC054440|Arpc3|56378|actin related protein 2/3 complex, subunit 3	BC055036|Arpc3|56378|actin related protein 2/3 complex, subunit 3
mm9_v1_chr19_+_3851772_3851838	0.689994	NHLH1,2.p2	AK005057|Chka|12660|choline kinase alpha	NM_001025566|Chka|12660|choline kinase alpha	NM_013490|Chka|12660|choline kinase alpha	AK014174|Chka|12660|choline kinase alpha	BC060218|Chka|12660|choline kinase alpha	AK052056|Chka|12660|choline kinase alpha	AK053818|Chka|12660|choline kinase alpha	AK166465|Chka|12660|choline kinase alpha	AK166641|Chka|12660|choline kinase alpha
mm9_v1_chr7_+_148748077_148748100	0.688681	NHLH1,2.p2	NM_007459|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr16_+_17146981_17147071	0.686898	NHLH1,2.p2	AK032396|Ydjc|69101|YdjC homolog (bacterial)	AK140044|Ydjc|69101|YdjC homolog (bacterial)	BC030425|Ydjc|69101|YdjC homolog (bacterial)	AK007503|Ydjc|69101|YdjC homolog (bacterial)	BC115584|Ydjc|69101|YdjC homolog (bacterial)	BC115585|Ydjc|69101|YdjC homolog (bacterial)	NM_026940|Ydjc|69101|YdjC homolog (bacterial)
mm9_v1_chr14_-_76956664_76956695	0.68656	NHLH1,2.p2	BC100483|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115492|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2	BC115493|Serp2|72661|stress-associated endoplasmic reticulum protein family member 2
mm9_v1_chr14_-_46277816_46277821	0.686299	NHLH1,2.p2	DQ272481|Ddhd1|114874|DDHD domain containing 1	DQ272482|Ddhd1|114874|DDHD domain containing 1	NM_001039106|Ddhd1|114874|DDHD domain containing 1	NM_001042719|Ddhd1|114874|DDHD domain containing 1	NM_176845|Ddhd1|114874|DDHD domain containing 1
mm9_v1_chr10_+_34017221_34017318	0.685993	NHLH1,2.p2	NM_030203|Tspyl4|72480|TSPY-like 4	AK034070|Tspyl4|72480|TSPY-like 4	AK158197|Tspyl4|72480|TSPY-like 4	BC017540|Tspyl4|72480|TSPY-like 4	BC034656|Tspyl4|72480|TSPY-like 4	AK030740|Tspyl4|72480|TSPY-like 4	AK034414|Tspyl4|72480|TSPY-like 4	AK020999|Tspyl4|72480|TSPY-like 4
mm9_v1_chr8_-_88364846_88364855	0.684829	NHLH1,2.p2	NM_028007|Itfg1|71927|integrin alpha FG-GAP repeat containing 1
mm9_v1_chr10_-_53099656_53099696	0.684713	NHLH1,2.p2	AK039734|Gm9766|100038725|predicted gene 9766
mm9_v1_chr3_+_36762025_36762077	0.684141	NHLH1,2.p2	AK172264|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	NM_172679|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK030086|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK041411|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene	AK220265|4932438A13Rik|229227|RIKEN cDNA 4932438A13 gene
mm9_v1_chr2_+_150612469_150612531	0.683893	NHLH1,2.p2	AK169052|Pygb|110078|brain glycogen phosphorylase	AK147763|Pygb|110078|brain glycogen phosphorylase	AK032769|Pygb|110078|brain glycogen phosphorylase	AK169631|Pygb|110078|brain glycogen phosphorylase	AK134667|Pygb|110078|brain glycogen phosphorylase	AK168381|Pygb|110078|brain glycogen phosphorylase	AK142716|Pygb|110078|brain glycogen phosphorylase	BC031457|Pygb|110078|brain glycogen phosphorylase	BC035283|Pygb|110078|brain glycogen phosphorylase	NM_153781|Pygb|110078|brain glycogen phosphorylase
mm9_v1_chr7_+_57230233_57230438	0.682576	NHLH1,2.p2	AK032845|Nell1|338352|NEL-like 1 (chicken)
mm9_v1_chr11_-_103815334_103815354	0.682454	NHLH1,2.p2	AK042341|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK049281|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK051430|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK141986|Nsf|18195|N-ethylmaleimide sensitive fusion protein	AK153905|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr10_-_27336648_27336835	0.68225	NHLH1,2.p2	U12147|Lama2|16773|laminin, alpha 2	AK046114|Lama2|16773|laminin, alpha 2	AK080131|Lama2|16773|laminin, alpha 2	AK030879|Lama2|16773|laminin, alpha 2	NM_008481|Lama2|16773|laminin, alpha 2	AK042011|Lama2|16773|laminin, alpha 2
mm9_v1_chr8_+_97056910_97056982	0.681739	NHLH1,2.p2	BC031801|Cpne2|234577|copine II	NM_153507|Cpne2|234577|copine II	AK160238|Cpne2|234577|copine II	AK086165|Cpne2|234577|copine II	BC022128|Cpne2|234577|copine II
mm9_v1_chr3_-_10440061_10440125	0.681716	NHLH1,2.p2	BC070431|Snx16|74718|sorting nexin 16	AK032055|Snx16|74718|sorting nexin 16	AK015872|Snx16|74718|sorting nexin 16	AK043975|Snx16|74718|sorting nexin 16	AK166422|Snx16|74718|sorting nexin 16	NM_001127191|Snx16|74718|sorting nexin 16	NM_029068|Snx16|74718|sorting nexin 16
mm9_v1_chr7_-_28327749_28327874	0.681298	NHLH1,2.p2	AK153508|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr5_-_31247757_31247970	0.681093	NHLH1,2.p2	AK003420|Cgref1|68567|cell growth regulator with EF hand domain 1	NM_001160149|Cgref1|68567|cell growth regulator with EF hand domain 1	BC023116|Cgref1|68567|cell growth regulator with EF hand domain 1	NM_026770|Cgref1|68567|cell growth regulator with EF hand domain 1
mm9_v1_chr10_+_40069255_40069363	0.680718	NHLH1,2.p2	AK052818|Cdk19|78334|cyclin-dependent kinase 19	AK147340|Cdk19|78334|cyclin-dependent kinase 19	BC062100|Cdk19|78334|cyclin-dependent kinase 19	BC048908|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr2_-_130867149_130867194	0.679863	NHLH1,2.p2	AK090192|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4
mm9_v1_chr9_-_22272576_22272657	0.6797	NHLH1,2.p2	BC048480|rp9|55934|retinitis pigmentosa 9 (human)
mm9_v1_chr19_+_44368557_44368575	0.677355	NHLH1,2.p2	AK083922|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr6_+_54222814_54222856	0.677059	NHLH1,2.p2	BC051139|Chn2|69993|chimerin (chimaerin) 2	NM_023543|Chn2|69993|chimerin (chimaerin) 2	BC141060|Chn2|69993|chimerin (chimaerin) 2
mm9_v1_chr12_-_88443285_88443488	0.676024	NHLH1,2.p2	AJ245945|Ngb|64242|neuroglobin	AK165775|Ngb|64242|neuroglobin	AK140173|Ngb|64242|neuroglobin	BC024263|Ngb|64242|neuroglobin	NM_022414|Ngb|64242|neuroglobin
mm9_v1_chr9_+_110147867_110148101	0.675524	NHLH1,2.p2	BC055736|Cspg5|29873|chondroitin sulfate proteoglycan 5	AK138233|Cspg5|29873|chondroitin sulfate proteoglycan 5	AF133700|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr9_-_83040061_83040223	0.673643	NHLH1,2.p2	AK002970|Hmgn3|94353|high mobility group nucleosomal binding domain 3	BC005693|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK003272|Hmgn3|94353|high mobility group nucleosomal binding domain 3	AK153223|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_026122|Hmgn3|94353|high mobility group nucleosomal binding domain 3	NM_175074|Hmgn3|94353|high mobility group nucleosomal binding domain 3
mm9_v1_chr6_-_72849701_72849794	0.673513	NHLH1,2.p2	AK142436|Kcmf1|74287|potassium channel modulatory factor 1	BC043330|Kcmf1|74287|potassium channel modulatory factor 1	BC029325|Kcmf1|74287|potassium channel modulatory factor 1
mm9_v1_chr3_-_108029499_108029565	0.67327	NHLH1,2.p2	BC030038|Sypl2|17306|synaptophysin-like 2	AB010140|Sypl2|17306|synaptophysin-like 2	NM_008596|Sypl2|17306|synaptophysin-like 2	AK082471|Sypl2|17306|synaptophysin-like 2	AK162663|Sypl2|17306|synaptophysin-like 2	AK052749|Sypl2|17306|synaptophysin-like 2	AK083422|Sypl2|17306|synaptophysin-like 2
mm9_v1_chr8_+_35217677_35217684	0.671985	NHLH1,2.p2	BC024888|Tmem66|67887|transmembrane protein 66	AK163218|Tmem66|67887|transmembrane protein 66
mm9_v1_chr13_+_32893989_32894122	0.669796	NHLH1,2.p2	AB056151|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr12_+_87165931_87165970	0.669762	NHLH1,2.p2	AB093278|Ttll5|320244|tubulin tyrosine ligase-like family, member 5	AK046017|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr5_+_148241736_148241750	0.668546	NHLH1,2.p2	AK153632|Pan3|72587|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr8_-_82581887_82581932	0.668411	NHLH1,2.p2	AF116865|Hhip|15245|Hedgehog-interacting protein	BC053012|Hhip|15245|Hedgehog-interacting protein	AK031539|Hhip|15245|Hedgehog-interacting protein	NM_020259|Hhip|15245|Hedgehog-interacting protein
mm9_v1_chr2_+_91490266_91490274	0.667002	NHLH1,2.p2	AK046291|Arhgap1|228359|Rho GTPase activating protein 1	NM_001145902|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr7_+_64846558_64846592	0.664983	NHLH1,2.p2	U14420|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK039070|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	AK147247|Gabrb3|14402|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm9_v1_chr14_-_45838944_45839057	0.663931	NHLH1,2.p2	BC052488|Txndc16|70561|thioredoxin domain containing 16	AK017582|Txndc16|70561|thioredoxin domain containing 16	AK034025|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chr5_+_109058850_109059020	0.662447	NHLH1,2.p2	AK034579|Tmem175|72392|transmembrane protein 175	AK038865|Tmem175|72392|transmembrane protein 175	AK076446|Tmem175|72392|transmembrane protein 175	AK082765|Tmem175|72392|transmembrane protein 175	AK170273|Tmem175|72392|transmembrane protein 175	AK013879|Tmem175|72392|transmembrane protein 175	BC005542|Tmem175|72392|transmembrane protein 175
mm9_v1_chr15_-_63891810_63892112	0.66216	NHLH1,2.p2	AK075613|Fam49b|223601|family with sequence similarity 49, member B	AK043641|Fam49b|223601|family with sequence similarity 49, member B	AK028062|Fam49b|223601|family with sequence similarity 49, member B	NM_144846|Fam49b|223601|family with sequence similarity 49, member B
mm9_v1_chr10_-_127057998_127058060	0.661804	NHLH1,2.p2	AK153375|Lrp1|16971|low density lipoprotein receptor-related protein 1	AK153549|Lrp1|16971|low density lipoprotein receptor-related protein 1	AK149974|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr3_+_51288108_51288406	0.66025	NHLH1,2.p2	AK087967|Rab33b|19338|RAB33B, member of RAS oncogene family	AK144706|Rab33b|19338|RAB33B, member of RAS oncogene family	AK004974|Rab33b|19338|RAB33B, member of RAS oncogene family	AK159674|Rab33b|19338|RAB33B, member of RAS oncogene family	AB232629|Rab33b|19338|RAB33B, member of RAS oncogene family	AK170483|Rab33b|19338|RAB33B, member of RAS oncogene family	AK203331|Rab33b|19338|RAB33B, member of RAS oncogene family
mm9_v1_chr17_-_57387033_57387124	0.659973	NHLH1,2.p2	AK047364|Gpr108|78308|G protein-coupled receptor 108	AF376726|Gpr108|78308|G protein-coupled receptor 108	AX775897|Gpr108|78308|G protein-coupled receptor 108	AK082797|Gpr108|78308|G protein-coupled receptor 108	BC016104|Gpr108|78308|G protein-coupled receptor 108	NM_030084|Gpr108|78308|G protein-coupled receptor 108	AK159313|Gpr108|78308|G protein-coupled receptor 108	AK170948|Gpr108|78308|G protein-coupled receptor 108	AK171030|Gpr108|78308|G protein-coupled receptor 108	AX775895|Gpr108|78308|G protein-coupled receptor 108
mm9_v1_chr8_+_15011221_15011301	0.659621	NHLH1,2.p2	AK019339|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr4_-_15076093_15076277	0.659284	NHLH1,2.p2	AK039240|Necab1|69352|N-terminal EF-hand calcium binding protein 1	AK081951|Necab1|69352|N-terminal EF-hand calcium binding protein 1	AY278200|Necab1|69352|N-terminal EF-hand calcium binding protein 1	BC067055|Necab1|69352|N-terminal EF-hand calcium binding protein 1	NM_178617|Necab1|69352|N-terminal EF-hand calcium binding protein 1
mm9_v1_chr17_+_45692647_45692701	0.658653	NHLH1,2.p2	AK008843|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151450|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK151692|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK011965|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	BC030923|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	NM_008690|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK153248|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon	AK088585|Nfkbie|18037|nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon
mm9_v1_chrX_-_45561726_45561881	0.65846	NHLH1,2.p2	BC042618|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK035745|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK079248|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032252|Zdhhc9|208884|zinc finger, DHHC domain containing 9	AK032233|Zdhhc9|208884|zinc finger, DHHC domain containing 9	NM_172465|Zdhhc9|208884|zinc finger, DHHC domain containing 9
mm9_v1_chr2_-_12933305_12933373	0.657414	NHLH1,2.p2	AB044560|C1ql3|227580|C1q-like 3
mm9_v1_chr11_+_22872016_22872058	0.656308	NHLH1,2.p2	NM_011663|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	D17407|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	S69507|Zrsr1|22183|zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
mm9_v1_chr11_+_98209978_98210141	0.655578	NHLH1,2.p2	BC026568|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	NM_144828|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B	BC011122|Ppp1r1b|19049|protein phosphatase 1, regulatory (inhibitor) subunit 1B
mm9_v1_chr5_+_117807290_117807469	0.653266	NHLH1,2.p2	AK080976|Wsb2|59043|WD repeat and SOCS box-containing 2	BC055100|Wsb2|59043|WD repeat and SOCS box-containing 2	NM_021539|Wsb2|59043|WD repeat and SOCS box-containing 2	AK157999|Wsb2|59043|WD repeat and SOCS box-containing 2	AF072881|Wsb2|59043|WD repeat and SOCS box-containing 2	AF033188|Wsb2|59043|WD repeat and SOCS box-containing 2
mm9_v1_chr15_-_71558142_71558267	0.653182	NHLH1,2.p2	BC125645|Fam135b|70363|family with sequence similarity 135, member B	BC125647|Fam135b|70363|family with sequence similarity 135, member B	AK043571|Fam135b|70363|family with sequence similarity 135, member B	NM_177819|Fam135b|70363|family with sequence similarity 135, member B
mm9_v1_chr7_+_3596827_3596852	0.653015	NHLH1,2.p2	AK046141|Cnot3|232791|CCR4-NOT transcription complex, subunit 3
mm9_v1_chr3_-_90269648_90269831	0.652369	NHLH1,2.p2	BC139767|Npr1|18160|natriuretic peptide receptor 1	BC110659|Npr1|18160|natriuretic peptide receptor 1	NM_008727|Npr1|18160|natriuretic peptide receptor 1
mm9_v1_chr12_-_8506790_8506819	0.651182	NHLH1,2.p2	BC018275|Rhob|11852|ras homolog gene family, member B	NM_007483|Rhob|11852|ras homolog gene family, member B	BC110992|Rhob|11852|ras homolog gene family, member B	AK167917|Rhob|11852|ras homolog gene family, member B	AK086873|Rhob|11852|ras homolog gene family, member B	AK164518|Rhob|11852|ras homolog gene family, member B
mm9_v1_chr7_-_117987867_117987920	0.649857	NHLH1,2.p2	BC096563|Rnf141|67150|ring finger protein 141	AK011839|Rnf141|67150|ring finger protein 141	BC018553|Rnf141|67150|ring finger protein 141	AK015505|Rnf141|67150|ring finger protein 141	NM_025999|Rnf141|67150|ring finger protein 141	AF353167|Rnf141|67150|ring finger protein 141	AK154417|Rnf141|67150|ring finger protein 141
mm9_v1_chr4_+_155266340_155266446	0.649708	NHLH1,2.p2	BC098196|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	BC025556|Acap3|140500|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm9_v1_chr8_+_35217685_35217743	0.648129	NHLH1,2.p2	AK007787|Tmem66|67887|transmembrane protein 66	AK075744|Tmem66|67887|transmembrane protein 66	AK088728|Tmem66|67887|transmembrane protein 66
mm9_v1_chr3_-_69402739_69402860	0.647079	NHLH1,2.p2	AK088407|B3galnt1|26879|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	NM_020026|B3galnt1|26879|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1
mm9_v1_chr10_-_126971614_126971641	0.646489	NHLH1,2.p2	AK004130|Nxph4|104080|neurexophilin 4	NM_183297|Nxph4|104080|neurexophilin 4
mm9_v1_chr5_-_147396407_147396450	0.646319	NHLH1,2.p2	D21061|Gpr12|14738|G-protein coupled receptor 12
mm9_v1_chrX_-_101396512_101396524	0.645861	NHLH1,2.p2	AK054513|C77370|245555|expressed sequence C77370
mm9_v1_chr15_-_75397601_75397641	0.642409	NHLH1,2.p2	NM_011837|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chrX_+_45872593_45872777	0.642115	NHLH1,2.p2	D83279|Rab33a|19337|RAB33A, member of RAS oncogene family	NM_011228|Rab33a|19337|RAB33A, member of RAS oncogene family	BC104390|Rab33a|19337|RAB33A, member of RAS oncogene family	BC104391|Rab33a|19337|RAB33A, member of RAS oncogene family	AB232628|Rab33a|19337|RAB33A, member of RAS oncogene family
mm9_v1_chr1_-_156946739_156946767	0.639989	NHLH1,2.p2	BC051986|Ier5|15939|immediate early response 5	BC021013|Ier5|15939|immediate early response 5	BC037147|Ier5|15939|immediate early response 5	AK146609|Ier5|15939|immediate early response 5	AK150461|Ier5|15939|immediate early response 5	AF079527|Ier5|15939|immediate early response 5	NM_010500|Ier5|15939|immediate early response 5
mm9_v1_chr2_+_22751003_22751041	0.639857	NHLH1,2.p2	NM_019501|Pdss1|56075|prenyl (solanesyl) diphosphate synthase, subunit 1
mm9_v1_chr8_-_26311823_26311983	0.638868	NHLH1,2.p2	BC125389|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	BC145709|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK037910|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK138513|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AK046384|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177412|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	AY177413|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_177089|Tacc1|320165|transforming, acidic coiled-coil containing protein 1	NM_199323|Tacc1|320165|transforming, acidic coiled-coil containing protein 1
mm9_v1_chr16_+_17759703_17759801	0.638642	NHLH1,2.p2	NM_145479|Klhl22|224023|kelch-like 22 (Drosophila)	AK086748|Klhl22|224023|kelch-like 22 (Drosophila)	AK012046|Klhl22|224023|kelch-like 22 (Drosophila)	AK028197|Klhl22|224023|kelch-like 22 (Drosophila)	AK030669|Klhl22|224023|kelch-like 22 (Drosophila)	AK143514|Klhl22|224023|kelch-like 22 (Drosophila)
mm9_v1_chr2_+_179992080_179992096	0.638572	NHLH1,2.p2	AK010610|Rps21|66481|ribosomal protein S21	NM_025587|Rps21|66481|ribosomal protein S21
mm9_v1_chr1_+_169528492_169528646	0.63844	NHLH1,2.p2	NM_009107|Rxrg|20183|retinoid X receptor gamma	BC058401|Rxrg|20183|retinoid X receptor gamma	S62948|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr2_+_69735301_69735369	0.638271	NHLH1,2.p2	DQ924536|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_001081548|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	NM_177783|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3	AK037622|Ubr3|68795|ubiquitin protein ligase E3 component n-recognin 3
mm9_v1_chr4_+_151671441_151671540	0.637011	NHLH1,2.p2	NM_133788|Icmt|57295|isoprenylcysteine carboxyl methyltransferase	AF209926|Icmt|57295|isoprenylcysteine carboxyl methyltransferase
mm9_v1_chr1_-_133964541_133964638	0.634335	NHLH1,2.p2	AK162495|Mfsd4|213006|major facilitator superfamily domain containing 4	AK048692|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_001114662|Mfsd4|213006|major facilitator superfamily domain containing 4	NM_172510|Mfsd4|213006|major facilitator superfamily domain containing 4
mm9_v1_chrX_+_53862956_53863040	0.632757	NHLH1,2.p2	NM_172780|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	AK032326|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	BC130221|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6	AK122232|Slc9a6|236794|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm9_v1_chr2_+_16277924_16277950	0.631796	NHLH1,2.p2	AK035165|Plxdc2|67448|plexin domain containing 2	AK004640|Plxdc2|67448|plexin domain containing 2	NM_026162|Plxdc2|67448|plexin domain containing 2
mm9_v1_chr5_-_131783942_131783957	0.631632	NHLH1,2.p2	AK087726|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)
mm9_v1_chr14_+_32842174_32842414	0.631367	NHLH1,2.p2	AK019470|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	BC133711|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	NM_030166|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2	AK163883|Galntl2|78754|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2
mm9_v1_chr6_-_115201790_115201797	0.631342	NHLH1,2.p2	AF282730|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr14_+_21895418_21895486	0.630692	NHLH1,2.p2	AK160264|Adk|11534|adenosine kinase
mm9_v1_chr9_-_31019412_31019424	0.629455	NHLH1,2.p2	AK164012|Aplp2|11804|amyloid beta (A4) precursor-like protein 2
mm9_v1_chr18_+_82754377_82754564	0.62807	NHLH1,2.p2	AK002947|Mbp|17196|myelin basic protein	AK203705|Mbp|17196|myelin basic protein	AK194025|Mbp|17196|myelin basic protein
mm9_v1_chr11_-_90548862_90548939	0.625221	NHLH1,2.p2	AK181527|Tom1l1|71943|target of myb1-like 1 (chicken)	AJ505007|Tom1l1|71943|target of myb1-like 1 (chicken)	AK009826|Tom1l1|71943|target of myb1-like 1 (chicken)	AK083630|Tom1l1|71943|target of myb1-like 1 (chicken)	AF395837|Tom1l1|71943|target of myb1-like 1 (chicken)	AK033712|Tom1l1|71943|target of myb1-like 1 (chicken)	NM_028011|Tom1l1|71943|target of myb1-like 1 (chicken)
mm9_v1_chr13_+_64533662_64533685	0.624594	NHLH1,2.p2	AK044470|Cdk20|105278|cyclin-dependent kinase 20
mm9_v1_chr5_-_149364353_149364422	0.624324	NHLH1,2.p2	NM_011908|Ubl3|24109|ubiquitin-like 3	BC024507|Ubl3|24109|ubiquitin-like 3	BC043729|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr2_-_148700920_148700989	0.623399	NHLH1,2.p2	AK212642|Cst3|13010|cystatin C
mm9_v1_chr18_-_62071494_62071513	0.623386	NHLH1,2.p2	NM_001164491|Ablim3|319713|actin binding LIM protein family, member 3
mm9_v1_chr7_+_4071087_4071169	0.622546	NHLH1,2.p2	AK043998|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001001454|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_001109765|Ttyh1|57776|tweety homolog 1 (Drosophila)	NM_021324|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK031550|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr11_+_53380870_53380943	0.622038	NHLH1,2.p2	AK161223|Kif3a|16568|kinesin family member 3A	NM_008443|Kif3a|16568|kinesin family member 3A	D12645|Kif3a|16568|kinesin family member 3A	AK161920|Kif3a|16568|kinesin family member 3A	AK169425|Kif3a|16568|kinesin family member 3A	BC052707|Kif3a|16568|kinesin family member 3A	BC044720|Kif3a|16568|kinesin family member 3A	AK147078|Kif3a|16568|kinesin family member 3A	BC023936|Kif3a|16568|kinesin family member 3A
mm9_v1_chr7_+_80885223_80885308	0.621772	NHLH1,2.p2	BC034069|Fam174b|100038347|family with sequence similarity 174, member B
mm9_v1_chr13_+_118391126_118391233	0.621604	NHLH1,2.p2	AK158322|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1	NM_010408|Hcn1|15165|hyperpolarization-activated, cyclic nucleotide-gated K+ 1
mm9_v1_chr2_-_31007794_31007831	0.621453	NHLH1,2.p2	AK043516|D330023K18Rik|320973|RIKEN cDNA D330023K18 gene
mm9_v1_chr1_+_89749844_89749886	0.621448	NHLH1,2.p2	NM_177646|Dgkd|227333|diacylglycerol kinase, delta
mm9_v1_chr17_-_79754365_79754410	0.620818	NHLH1,2.p2	BC092297|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	BC034714|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	AK012309|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3	AK150214|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3
mm9_v1_chr5_+_124562306_124562355	0.620753	NHLH1,2.p2	AK168946|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	BC069872|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004943|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK017497|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK018534|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	NM_025671|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2	AK004916|Ogfod2|66627|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm9_v1_chr9_+_72833379_72833456	0.620059	NHLH1,2.p2	AK076325|Ccpg1|72278|cell cycle progression 1	AK128894|Ccpg1|72278|cell cycle progression 1	AK148864|Ccpg1|72278|cell cycle progression 1	BC082602|Ccpg1|72278|cell cycle progression 1	BC043049|Ccpg1|72278|cell cycle progression 1	AK007973|Ccpg1|72278|cell cycle progression 1	AK134675|Ccpg1|72278|cell cycle progression 1	AK032645|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr13_-_47110187_47110218	0.619924	NHLH1,2.p2	BC062644|Nhlrc1|105193|NHL repeat containing 1	BC118952|Nhlrc1|105193|NHL repeat containing 1	AK045746|Nhlrc1|105193|NHL repeat containing 1	BC118951|Nhlrc1|105193|NHL repeat containing 1	NM_175340|Nhlrc1|105193|NHL repeat containing 1
mm9_v1_chr1_+_187278726_187278919	0.619468	NHLH1,2.p2	AK053537|Slc30a10|226781|solute carrier family 30, member 10	NM_001033286|Slc30a10|226781|solute carrier family 30, member 10	BC054548|Slc30a10|226781|solute carrier family 30, member 10	AK136932|Slc30a10|226781|solute carrier family 30, member 10
mm9_v1_chr5_-_122952228_122952237	0.619255	NHLH1,2.p2	NM_001110140|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	NM_009722|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr10_+_4424140_4424212	0.617704	NHLH1,2.p2	AK030492|Rgs17|56533|regulator of G-protein signaling 17	NM_001161822|Rgs17|56533|regulator of G-protein signaling 17	NM_019958|Rgs17|56533|regulator of G-protein signaling 17	AK018279|Rgs17|56533|regulator of G-protein signaling 17	AK045770|Rgs17|56533|regulator of G-protein signaling 17	AK046009|Rgs17|56533|regulator of G-protein signaling 17	AK078745|Rgs17|56533|regulator of G-protein signaling 17	AK163188|Rgs17|56533|regulator of G-protein signaling 17	AF191555|Rgs17|56533|regulator of G-protein signaling 17	BC064782|Rgs17|56533|regulator of G-protein signaling 17
mm9_v1_chr7_-_87948093_87948239	0.617148	NHLH1,2.p2	BC037685|Iqgap1|29875|IQ motif containing GTPase activating protein 1	BC046385|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK163056|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK029434|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK087141|Iqgap1|29875|IQ motif containing GTPase activating protein 1	BC022105|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK129044|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK016896|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AF240630|Iqgap1|29875|IQ motif containing GTPase activating protein 1	AK164482|Iqgap1|29875|IQ motif containing GTPase activating protein 1	NM_016721|Iqgap1|29875|IQ motif containing GTPase activating protein 1
mm9_v1_chr4_-_153534748_153534817	0.616887	NHLH1,2.p2	BC019544|Tprgl|67808|transformation related protein 63 regulated like	AK004777|Tprgl|67808|transformation related protein 63 regulated like	AK155413|Tprgl|67808|transformation related protein 63 regulated like	NM_026388|Tprgl|67808|transformation related protein 63 regulated like
mm9_v1_chr2_-_32837527_32837604	0.6163	NHLH1,2.p2	AF232061|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856043|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856044|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856045|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AY856046|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AJ245936|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	Y17802|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	BC090993|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	NM_019488|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK141193|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK170319|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK081806|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8	AK155792|Slc2a8|56017|solute carrier family 2, (facilitated glucose transporter), member 8
mm9_v1_chr1_+_107560433_107560513	0.615695	NHLH1,2.p2	AK035724|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_029349|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	NM_173187|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK148005|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC051567|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117950|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	BC117949|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene	AK009628|2310035C23Rik|227446|RIKEN cDNA 2310035C23 gene
mm9_v1_chr2_+_49474775_49474833	0.615661	NHLH1,2.p2	BC067051|Kif5c|16574|kinesin family member 5C	NM_008449|Kif5c|16574|kinesin family member 5C
mm9_v1_chr2_-_153355706_153355706	0.614446	NHLH1,2.p2	AK147524|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene	NM_001134300|8430427H17Rik|329540|RIKEN cDNA 8430427H17 gene
mm9_v1_chr4_-_63707849_63707898	0.613956	NHLH1,2.p2	D90343|Tnc|21923|tenascin C
mm9_v1_chr13_-_107812106_107812216	0.613332	NHLH1,2.p2	AK037037|Kif2a|16563|kinesin family member 2A	BC006803|Kif2a|16563|kinesin family member 2A	D12644|Kif2a|16563|kinesin family member 2A	NM_001145779|Kif2a|16563|kinesin family member 2A	NM_008442|Kif2a|16563|kinesin family member 2A
mm9_v1_chr2_-_181100108_181100116	0.612563	NHLH1,2.p2	NM_001165991|Arfrp1|76688|ADP-ribosylation factor related protein 1	NM_001165992|Arfrp1|76688|ADP-ribosylation factor related protein 1	NM_001165995|Arfrp1|76688|ADP-ribosylation factor related protein 1	NM_029702|Arfrp1|76688|ADP-ribosylation factor related protein 1
mm9_v1_chr17_-_46888942_46888996	0.611938	NHLH1,2.p2	AK220209|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK031742|Cnpy3|72029|canopy 3 homolog (zebrafish)
mm9_v1_chr7_+_25266986_25267120	0.611233	NHLH1,2.p2	AK143204|Cadm4|260299|cell adhesion molecule 4	NM_153112|Cadm4|260299|cell adhesion molecule 4	AY059394|Cadm4|260299|cell adhesion molecule 4
mm9_v1_chr17_-_25929201_25929366	0.610914	NHLH1,2.p2	AK132031|Fam173a|214917|family with sequence similarity 173, member A	BC096050|Fam173a|214917|family with sequence similarity 173, member A	NM_145410|Fam173a|214917|family with sequence similarity 173, member A	AK162337|Fam173a|214917|family with sequence similarity 173, member A	AK146214|Fam173a|214917|family with sequence similarity 173, member A	BC008155|Fam173a|214917|family with sequence similarity 173, member A
mm9_v1_chr1_-_127808723_127808763	0.610692	NHLH1,2.p2	BC058599|Lypd1|72585|Ly6/Plaur domain containing 1
mm9_v1_chr17_-_84587278_84587289	0.609814	NHLH1,2.p2	AK159513|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK160955|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	AK170763|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	NM_001001806|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr3_-_153575944_153576012	0.607397	NHLH1,2.p2	AK159902|Rabggtb|19352|RAB geranylgeranyl transferase, b subunit
mm9_v1_chr3_-_8666985_8667012	0.607281	NHLH1,2.p2	AF151521|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AJ243895|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AF176423|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1
mm9_v1_chr4_+_8462948_8462994	0.607165	NHLH1,2.p2	AK194278|Rab2a|59021|RAB2A, member RAS oncogene family
mm9_v1_chr8_+_74135114_74135308	0.605767	NHLH1,2.p2	BC018287|Glt25d1|234407|glycosyltransferase 25 domain containing 1
mm9_v1_chr8_+_11758322_11758364	0.60552	NHLH1,2.p2	NM_001113518|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	NM_017402|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	BC044838|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AK052545|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AY220301|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr16_+_13903253_13903280	0.605347	NHLH1,2.p2	AK136449|Mpv17l|93734|Mpv17 transgene, kidney disease mutant-like
mm9_v1_chrX_-_7151340_7151452	0.603935	NHLH1,2.p2	BC059275|Ppp1r3f|54646|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm9_v1_chr6_+_88674821_88674926	0.602296	NHLH1,2.p2	AJ316580|Mgll|23945|monoglyceride lipase
mm9_v1_chr5_+_150921233_150921280	0.602031	NHLH1,2.p2	AK157981|Fry|320365|furry homolog (Drosophila)
mm9_v1_chr5_-_113739711_113739807	0.600955	NHLH1,2.p2	BC138049|Sgsm1|52850|small G protein signaling modulator 1	BC138050|Sgsm1|52850|small G protein signaling modulator 1	AK053555|Sgsm1|52850|small G protein signaling modulator 1	AK044716|Sgsm1|52850|small G protein signaling modulator 1	AK170021|Sgsm1|52850|small G protein signaling modulator 1	NM_001162965|Sgsm1|52850|small G protein signaling modulator 1	NM_172718|Sgsm1|52850|small G protein signaling modulator 1
mm9_v1_chr7_+_28043864_28043895	0.600331	NHLH1,2.p2	U96441|Numbl|18223|numb-like
mm9_v1_chrX_+_10294707_10294726	0.599572	NHLH1,2.p2	AK131619|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	AK014143|Mid1ip1|68041|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm9_v1_chr17_+_8138441_8138546	0.598559	NHLH1,2.p2	NM_025789|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	AK148230|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC057649|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC022760|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)	BC110424|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chr10_+_81037993_81038004	0.59765	NHLH1,2.p2	AK160999|Tle2|21886|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm9_v1_chr11_+_102994627_102994711	0.596878	NHLH1,2.p2	AK016624|Hexim2|71059|hexamthylene bis-acetamide inducible 2	AK160110|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_001130516|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_001130515|Hexim2|71059|hexamthylene bis-acetamide inducible 2	NM_027658|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC026458|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC115597|Hexim2|71059|hexamthylene bis-acetamide inducible 2	BC115598|Hexim2|71059|hexamthylene bis-acetamide inducible 2
mm9_v1_chr7_+_16894925_16895103	0.596821	NHLH1,2.p2	NM_133234|Bbc3|170770|BCL2 binding component 3	BC044782|Bbc3|170770|BCL2 binding component 3	AF332560|Bbc3|170770|BCL2 binding component 3	BC060370|Bbc3|170770|BCL2 binding component 3	BC147261|Bbc3|170770|BCL2 binding component 3	BC147262|Bbc3|170770|BCL2 binding component 3
mm9_v1_chr17_-_46889082_46889212	0.596621	NHLH1,2.p2	AK086940|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK143428|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK010702|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK005532|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK049358|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK141306|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK082340|Cnpy3|72029|canopy 3 homolog (zebrafish)	AF361644|Cnpy3|72029|canopy 3 homolog (zebrafish)	BC013549|Cnpy3|72029|canopy 3 homolog (zebrafish)	AK085617|Cnpy3|72029|canopy 3 homolog (zebrafish)	NM_028065|Cnpy3|72029|canopy 3 homolog (zebrafish)
mm9_v1_chr3_-_94386449_94386477	0.595867	NHLH1,2.p2	AK122296|Snx27|76742|sorting nexin family member 27	BC053495|Snx27|76742|sorting nexin family member 27
mm9_v1_chr11_-_97847679_97847782	0.595801	NHLH1,2.p2	BC114352|Plxdc1|72324|plexin domain containing 1	AF378760|Plxdc1|72324|plexin domain containing 1	AK036144|Plxdc1|72324|plexin domain containing 1	AK153684|Plxdc1|72324|plexin domain containing 1	AK040620|Plxdc1|72324|plexin domain containing 1	AK010361|Plxdc1|72324|plexin domain containing 1	NM_001163608|Plxdc1|72324|plexin domain containing 1	NM_028199|Plxdc1|72324|plexin domain containing 1
mm9_v1_chr9_+_31193769_31193815	0.595013	NHLH1,2.p2	NM_172766|Nfrkb|235134|nuclear factor related to kappa B binding protein	AK041206|Nfrkb|235134|nuclear factor related to kappa B binding protein	AK043432|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC060076|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC033595|Nfrkb|235134|nuclear factor related to kappa B binding protein	BC059861|Nfrkb|235134|nuclear factor related to kappa B binding protein
mm9_v1_chr13_+_93381019_93381074	0.594389	NHLH1,2.p2	AK136799|Serinc5|218442|serine incorporator 5
mm9_v1_chr15_+_78744802_78744815	0.593839	NHLH1,2.p2	BC058388|Pdxp|57028|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm9_v1_chr14_+_118536326_118536519	0.59378	NHLH1,2.p2	NM_021434|Gpr180|58245|G protein-coupled receptor 180	AK169908|Gpr180|58245|G protein-coupled receptor 180	AB041545|Gpr180|58245|G protein-coupled receptor 180	AK170316|Gpr180|58245|G protein-coupled receptor 180	BC055726|Gpr180|58245|G protein-coupled receptor 180	AK053422|Gpr180|58245|G protein-coupled receptor 180	BC069981|Gpr180|58245|G protein-coupled receptor 180	AK212055|Gpr180|58245|G protein-coupled receptor 180
mm9_v1_chr17_+_45700882_45700945	0.592998	NHLH1,2.p2	AK155551|Slc35b2|73836|solute carrier family 35, member B2	AK144403|Slc35b2|73836|solute carrier family 35, member B2	AK003377|Slc35b2|73836|solute carrier family 35, member B2	AK090329|Slc35b2|73836|solute carrier family 35, member B2	AK152362|Slc35b2|73836|solute carrier family 35, member B2	BC025875|Slc35b2|73836|solute carrier family 35, member B2	BC036992|Slc35b2|73836|solute carrier family 35, member B2	AF414190|Slc35b2|73836|solute carrier family 35, member B2	AK154868|Slc35b2|73836|solute carrier family 35, member B2
mm9_v1_chr7_-_17613079_17613266	0.592364	NHLH1,2.p2	U12204|Ppp5c|19060|protein phosphatase 5, catalytic subunit	BC003744|Ppp5c|19060|protein phosphatase 5, catalytic subunit	AF018262|Ppp5c|19060|protein phosphatase 5, catalytic subunit	NM_011155|Ppp5c|19060|protein phosphatase 5, catalytic subunit
mm9_v1_chr16_+_18877129_18877328	0.591625	NHLH1,2.p2	BC052856|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	BC060181|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr6_+_61130318_61130318	0.59143	NHLH1,2.p2	NM_001164316|Fam190a|232035|family with sequence similarity 190, member A	NM_183310|Fam190a|232035|family with sequence similarity 190, member A
mm9_v1_chr16_-_21333381_21333436	0.591007	NHLH1,2.p2	AK018285|Magef1|76222|melanoma antigen family F, 1
mm9_v1_chr13_+_94541584_94541713	0.590882	NHLH1,2.p2	AK140163|Arsb|11881|arylsulfatase B	AK158312|Arsb|11881|arylsulfatase B	NM_009712|Arsb|11881|arylsulfatase B	AK083309|Arsb|11881|arylsulfatase B	BC150661|Arsb|11881|arylsulfatase B	AK154098|Arsb|11881|arylsulfatase B
mm9_v1_chr19_+_10463540_10463619	0.590773	NHLH1,2.p2	NM_018801|Syt7|54525|synaptotagmin VII	NM_173067|Syt7|54525|synaptotagmin VII	NM_173068|Syt7|54525|synaptotagmin VII	AK080850|Syt7|54525|synaptotagmin VII
mm9_v1_chr2_+_140221165_140221195	0.590158	NHLH1,2.p2	AK134694|Macrod2|72899|MACRO domain containing 2	NM_001013802|Macrod2|72899|MACRO domain containing 2	AK013491|Macrod2|72899|MACRO domain containing 2	NM_028387|Macrod2|72899|MACRO domain containing 2	AK011824|Macrod2|72899|MACRO domain containing 2	AK165589|Macrod2|72899|MACRO domain containing 2	AK029184|Macrod2|72899|MACRO domain containing 2	AK160433|Macrod2|72899|MACRO domain containing 2	AK004072|Macrod2|72899|MACRO domain containing 2
mm9_v1_chr7_+_129776837_129777102	0.589782	NHLH1,2.p2	BC038148|Prkcb|18751|protein kinase C, beta	BC048553|Prkcb|18751|protein kinase C, beta
mm9_v1_chr17_-_27702625_27702715	0.589065	NHLH1,2.p2	BC028464|AI413582|106672|expressed sequence AI413582	AK131681|AI413582|106672|expressed sequence AI413582	AK131593|AI413582|106672|expressed sequence AI413582	NM_001002895|AI413582|106672|expressed sequence AI413582
mm9_v1_chr14_-_46277274_46277306	0.587878	NHLH1,2.p2	AK048690|Ddhd1|114874|DDHD domain containing 1
mm9_v1_chr5_+_37633353_37633487	0.58743	NHLH1,2.p2	AK158793|Crmp1|12933|collapsin response mediator protein 1	AK159049|Crmp1|12933|collapsin response mediator protein 1
mm9_v1_chrX_-_61530035_61530158	0.587321	NHLH1,2.p2	BC117890|Slitrk4|245446|SLIT and NTRK-like family, member 4	BC117891|Slitrk4|245446|SLIT and NTRK-like family, member 4	AK046301|Slitrk4|245446|SLIT and NTRK-like family, member 4	AK039763|Slitrk4|245446|SLIT and NTRK-like family, member 4	AK032263|Slitrk4|245446|SLIT and NTRK-like family, member 4
mm9_v1_chr8_+_13159279_13159395	0.586456	NHLH1,2.p2	M25244|Lamp1|16783|lysosomal-associated membrane protein 1	AK159376|Lamp1|16783|lysosomal-associated membrane protein 1	M32015|Lamp1|16783|lysosomal-associated membrane protein 1
mm9_v1_chr7_-_31911754_31911789	0.585671	NHLH1,2.p2	U85786|Scn1b|20266|sodium channel, voltage-gated, type I, beta
mm9_v1_chr2_-_180008165_180008177	0.584247	NHLH1,2.p2	AK050121|Cables2|252966|CDK5 and Abl enzyme substrate 2	NM_145851|Cables2|252966|CDK5 and Abl enzyme substrate 2
mm9_v1_chr14_+_70977443_70977712	0.583552	NHLH1,2.p2	AK137014|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK089446|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	NM_153136|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK155086|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK157937|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18	AK145997|Nudt18|213484|nudix (nucleoside diphosphate linked moiety X)-type motif 18
mm9_v1_chr5_+_115392192_115392243	0.583247	NHLH1,2.p2	AK135000|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	BC031162|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	NM_028211|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK008740|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene	AK159360|2210016L21Rik|72357|RIKEN cDNA 2210016L21 gene
mm9_v1_chr12_+_72410755_72411027	0.581396	NHLH1,2.p2	NM_001190466|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	NM_021532|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	BC145833|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	AF488775|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)	AY208970|Dact1|59036|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm9_v1_chr7_+_148748102_148748107	0.580908	NHLH1,2.p2	X14972|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr13_-_49063376_49063462	0.580715	NHLH1,2.p2	AK172909|Fam120a|218236|family with sequence similarity 120, member A
mm9_v1_chr2_+_31951030_31951062	0.580552	NHLH1,2.p2	AK134638|Ppapdc3|227721|phosphatidic acid phosphatase type 2 domain containing 3
mm9_v1_chr12_+_117724239_117724242	0.578046	NHLH1,2.p2	AK083776|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2
mm9_v1_chr17_+_24987445_24987498	0.576897	NHLH1,2.p2	AK147022|Hagh|14651|hydroxyacyl glutathione hydrolase	BC004749|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr13_-_86186317_86186413	0.576373	NHLH1,2.p2	X52940|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK027989|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK002494|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK153444|Cox7c|12867|cytochrome c oxidase, subunit VIIc	BC086792|Cox7c|12867|cytochrome c oxidase, subunit VIIc	BC010772|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK168077|Cox7c|12867|cytochrome c oxidase, subunit VIIc	AK131871|Cox7c|12867|cytochrome c oxidase, subunit VIIc	NM_007749|Cox7c|12867|cytochrome c oxidase, subunit VIIc
mm9_v1_chr7_+_16705217_16705304	0.575304	NHLH1,2.p2	NM_133727|Kptn|70394|kaptin	AK081226|Kptn|70394|kaptin	AK009746|Kptn|70394|kaptin	BC018316|Kptn|70394|kaptin
mm9_v1_chr19_+_46471385_46471515	0.574385	NHLH1,2.p2	AJ131692|Sufu|24069|suppressor of fused homolog (Drosophila)	AK016976|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_001025391|Sufu|24069|suppressor of fused homolog (Drosophila)	NM_015752|Sufu|24069|suppressor of fused homolog (Drosophila)	BC048168|Sufu|24069|suppressor of fused homolog (Drosophila)	BC056997|Sufu|24069|suppressor of fused homolog (Drosophila)	AK156410|Sufu|24069|suppressor of fused homolog (Drosophila)	AF134893|Sufu|24069|suppressor of fused homolog (Drosophila)	AJ308626|Sufu|24069|suppressor of fused homolog (Drosophila)	AK015885|Sufu|24069|suppressor of fused homolog (Drosophila)	AK047603|Sufu|24069|suppressor of fused homolog (Drosophila)
mm9_v1_chr7_+_119369347_119369415	0.574231	NHLH1,2.p2	NM_001193305|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	NM_177282|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK030608|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK138935|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163078|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK143191|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK161075|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2	AK163231|Mical2|320878|microtubule associated monoxygenase, calponin and LIM domain containing 2
mm9_v1_chr3_-_68930786_68930811	0.57378	NHLH1,2.p2	BC026821|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr5_-_37139883_37139925	0.572798	NHLH1,2.p2	AK011795|Cno|117197|cappuccino	BC019169|Cno|117197|cappuccino	NM_133724|Cno|117197|cappuccino
mm9_v1_chr12_+_33505364_33505391	0.570813	NHLH1,2.p2	AY679720|Nampt|59027|nicotinamide phosphoribosyltransferase	AK086415|Nampt|59027|nicotinamide phosphoribosyltransferase	AK153926|Nampt|59027|nicotinamide phosphoribosyltransferase	BC004059|Nampt|59027|nicotinamide phosphoribosyltransferase
mm9_v1_chr14_-_41827037_41827078	0.56999	NHLH1,2.p2	BC056635|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	AK017688|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	NM_027464|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene	AK156326|5730469M10Rik|70564|RIKEN cDNA 5730469M10 gene
mm9_v1_chr7_+_151361424_151361430	0.56865	NHLH1,2.p2	AK139360|Shank2|210274|SH3/ankyrin domain gene 2	NM_001113373|Shank2|210274|SH3/ankyrin domain gene 2
mm9_v1_chr13_+_32893953_32893987	0.568612	NHLH1,2.p2	AK082078|Wrnip1|78903|Werner helicase interacting protein 1
mm9_v1_chr5_+_134659874_134659999	0.567811	NHLH1,2.p2	AK082488|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY116023|Gtf2ird2|114674|GTF2I repeat domain containing 2	AK081801|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC057179|Gtf2ird2|114674|GTF2I repeat domain containing 2	AY014963|Gtf2ird2|114674|GTF2I repeat domain containing 2	NM_053266|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132157|Gtf2ird2|114674|GTF2I repeat domain containing 2	BC132159|Gtf2ird2|114674|GTF2I repeat domain containing 2
mm9_v1_chr7_-_26004870_26004903	0.56713	NHLH1,2.p2	AK043908|Dedd2|67379|death effector domain-containing DNA binding protein 2	BC092250|Dedd2|67379|death effector domain-containing DNA binding protein 2	NM_207677|Dedd2|67379|death effector domain-containing DNA binding protein 2	AK135320|Dedd2|67379|death effector domain-containing DNA binding protein 2
mm9_v1_chr19_+_36629128_36629172	0.567011	NHLH1,2.p2	AK142777|Hectd2|226098|HECT domain containing 2	NM_001163471|Hectd2|226098|HECT domain containing 2	NM_172637|Hectd2|226098|HECT domain containing 2	BC137671|Hectd2|226098|HECT domain containing 2	BC144815|Hectd2|226098|HECT domain containing 2	AK041629|Hectd2|226098|HECT domain containing 2	AK043646|Hectd2|226098|HECT domain containing 2	AK079321|Hectd2|226098|HECT domain containing 2
mm9_v1_chr17_-_8020162_8020169	0.565364	NHLH1,2.p2	
mm9_v1_chr10_+_69707847_69707906	0.564445	NHLH1,2.p2	AK004599|Slc16a9|66859|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm9_v1_chr15_-_102552527_102552608	0.563649	NHLH1,2.p2	AK087513|Calcoco1|67488|calcium binding and coiled coil domain 1	NM_026192|Calcoco1|67488|calcium binding and coiled coil domain 1
mm9_v1_chr8_+_96334452_96334737	0.563646	NHLH1,2.p2	AK160434|Gnao1|14681|guanine nucleotide binding protein, alpha O	AK035907|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_001113384|Gnao1|14681|guanine nucleotide binding protein, alpha O	NM_010308|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr18_+_59334993_59335106	0.562727	NHLH1,2.p2	NM_001081328|Chsy3|78923|chondroitin sulfate synthase 3	AK043732|Chsy3|78923|chondroitin sulfate synthase 3	AK044099|Chsy3|78923|chondroitin sulfate synthase 3	AK038429|Chsy3|78923|chondroitin sulfate synthase 3	AK048196|Chsy3|78923|chondroitin sulfate synthase 3	AK220519|Chsy3|78923|chondroitin sulfate synthase 3
mm9_v1_chr4_+_106851234_106851330	0.562461	NHLH1,2.p2	NM_029565|Tmem59|56374|transmembrane protein 59	AF116911|Tmem59|56374|transmembrane protein 59	BC045145|Tmem59|56374|transmembrane protein 59	AX775905|Tmem59|56374|transmembrane protein 59	AK159761|Tmem59|56374|transmembrane protein 59	BC018379|Tmem59|56374|transmembrane protein 59	AK145644|Tmem59|56374|transmembrane protein 59	AK050162|Tmem59|56374|transmembrane protein 59	BC058273|Tmem59|56374|transmembrane protein 59	AK003252|Tmem59|56374|transmembrane protein 59	AK166772|Tmem59|56374|transmembrane protein 59	AK167058|Tmem59|56374|transmembrane protein 59	BC014732|Tmem59|56374|transmembrane protein 59
mm9_v1_chr3_-_68930721_68930780	0.562189	NHLH1,2.p2	AF020771|Kpna4|16649|karyopherin (importin) alpha 4	CT010281|Kpna4|16649|karyopherin (importin) alpha 4
mm9_v1_chr7_-_28338127_28338176	0.561876	NHLH1,2.p2	BC068170|Pld3|18807|phospholipase D family, member 3	AF026124|Pld3|18807|phospholipase D family, member 3	NM_011116|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr8_+_125135519_125135565	0.561297	NHLH1,2.p2	NM_021502|Trappc2l|59005|trafficking protein particle complex 2-like	AB030200|Trappc2l|59005|trafficking protein particle complex 2-like	BC028502|Trappc2l|59005|trafficking protein particle complex 2-like	AK007526|Trappc2l|59005|trafficking protein particle complex 2-like	BC114968|Trappc2l|59005|trafficking protein particle complex 2-like
mm9_v1_chr16_-_60605072_60605085	0.560887	NHLH1,2.p2	U58332|Epha6|13840|Eph receptor A6
mm9_v1_chr15_+_32174546_32174624	0.560655	NHLH1,2.p2	AK143026|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK045236|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	NM_009154|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK031231|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK054256|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK165206|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK039101|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK157706|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	AK141612|Sema5a|20356|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm9_v1_chr8_+_3516840_3516873	0.560257	NHLH1,2.p2	AK162641|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK089095|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr14_+_73952438_73952612	0.559828	NHLH1,2.p2	AK016060|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK081965|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK088801|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK150594|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK152783|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160130|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	NM_011506|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK153198|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC056353|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	BC057605|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK132762|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK160652|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit	AK005273|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr11_-_59601120_59601161	0.559773	NHLH1,2.p2	AK077214|Pld6|194908|phospholipase D family, member 6	AK139586|Pld6|194908|phospholipase D family, member 6	BC119245|Pld6|194908|phospholipase D family, member 6	BC145052|Pld6|194908|phospholipase D family, member 6	NM_183139|Pld6|194908|phospholipase D family, member 6
mm9_v1_chr11_-_51420064_51420093	0.559717	NHLH1,2.p2	DQ397821|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B	DQ397822|Hnrnpab|15384|heterogeneous nuclear ribonucleoprotein A/B
mm9_v1_chr1_-_95532278_95532320	0.558794	NHLH1,2.p2	BC071218|Stk25|59041|serine/threonine kinase 25 (yeast)	NM_021537|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr8_-_88364656_88364675	0.558476	NHLH1,2.p2	AK009867|Itfg1|71927|integrin alpha FG-GAP repeat containing 1
mm9_v1_chr5_+_3344201_3344322	0.558378	NHLH1,2.p2	AK078973|Cdk6|12571|cyclin-dependent kinase 6	AF132483|Cdk6|12571|cyclin-dependent kinase 6	NM_009873|Cdk6|12571|cyclin-dependent kinase 6	BC119360|Cdk6|12571|cyclin-dependent kinase 6	BC120595|Cdk6|12571|cyclin-dependent kinase 6
mm9_v1_chr17_-_91492065_91492142	0.557561	NHLH1,2.p2	BC079893|Nrxn1|18189|neurexin I	AK005349|Nrxn1|18189|neurexin I	AK139280|Nrxn1|18189|neurexin I	AK163484|Nrxn1|18189|neurexin I	AK037724|Nrxn1|18189|neurexin I	AB093249|Nrxn1|18189|neurexin I	NM_020252|Nrxn1|18189|neurexin I	NM_177284|Nrxn1|18189|neurexin I	AK137407|Nrxn1|18189|neurexin I
mm9_v1_chr4_+_59594569_59594621	0.556417	NHLH1,2.p2	AK145230|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	AY725196|Hsdl2|72479|hydroxysteroid dehydrogenase like 2
mm9_v1_chr17_+_43153490_43153503	0.556212	NHLH1,2.p2	AK043823|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21	NM_178589|Tnfrsf21|94185|tumor necrosis factor receptor superfamily, member 21
mm9_v1_chr12_+_117724182_117724212	0.555689	NHLH1,2.p2	NM_011215|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK081267|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	AK138655|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	BC048570|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2
mm9_v1_chr9_+_57369014_57369041	0.555628	NHLH1,2.p2	NM_007747|Cox5a|12858|cytochrome c oxidase, subunit Va
mm9_v1_chr3_-_126928844_126928867	0.554957	NHLH1,2.p2	AK044093|Ank2|109676|ankyrin 2, brain
mm9_v1_chr4_-_93002201_93002224	0.554794	NHLH1,2.p2	AY546089|Tusc1|69136|tumor suppressor candidate 1	NM_026954|Tusc1|69136|tumor suppressor candidate 1
mm9_v1_chr17_-_7152972_7153124	0.552501	NHLH1,2.p2	BC110284|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chr14_+_33670038_33670099	0.552072	NHLH1,2.p2	AK040699|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene
mm9_v1_chr10_-_76188683_76188791	0.551993	NHLH1,2.p2	AK052924|Col6a1|12833|collagen, type VI, alpha 1	NM_009933|Col6a1|12833|collagen, type VI, alpha 1	X66405|Col6a1|12833|collagen, type VI, alpha 1
mm9_v1_chr11_-_98636538_98636646	0.551402	NHLH1,2.p2	AK041047|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK135640|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	X86010|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137582|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	NM_145434|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK137398|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK146430|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr19_+_44368588_44368593	0.549593	NHLH1,2.p2	BC040384|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr15_-_72640728_72640753	0.549418	NHLH1,2.p2	AY151252|Peg13|353342|paternally expressed 13
mm9_v1_chr11_+_29592897_29592944	0.546968	NHLH1,2.p2	NM_194052|Rtn4|68585|reticulon 4	NM_194053|Rtn4|68585|reticulon 4	NM_194054|Rtn4|68585|reticulon 4
mm9_v1_chr9_-_100471461_100471511	0.546303	NHLH1,2.p2	NM_001101483|Tmem22|245020|transmembrane protein 22
mm9_v1_chr12_+_8928949_8929068	0.546195	NHLH1,2.p2	
mm9_v1_chr13_+_85329102_85329221	0.545256	NHLH1,2.p2	BC038861|Ccnh|66671|cyclin H	AK217691|Ccnh|66671|cyclin H
mm9_v1_chr2_-_154233754_154233847	0.544645	NHLH1,2.p2	BC018546|Snta1|20648|syntrophin, acidic 1	U00677|Snta1|20648|syntrophin, acidic 1	AK137379|Snta1|20648|syntrophin, acidic 1	NM_009228|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr5_-_147888037_147888155	0.54446	NHLH1,2.p2	AK140320|Lnx2|140887|ligand of numb-protein X 2	AK170146|Lnx2|140887|ligand of numb-protein X 2	BC117938|Lnx2|140887|ligand of numb-protein X 2	BC117937|Lnx2|140887|ligand of numb-protein X 2	AF401681|Lnx2|140887|ligand of numb-protein X 2	BC090665|Lnx2|140887|ligand of numb-protein X 2	AK047053|Lnx2|140887|ligand of numb-protein X 2	AK036218|Lnx2|140887|ligand of numb-protein X 2	NM_080795|Lnx2|140887|ligand of numb-protein X 2
mm9_v1_chr6_+_87837883_87838019	0.543771	NHLH1,2.p2	AK169256|Copg|54161|coatomer protein complex, subunit gamma	AK172519|Copg|54161|coatomer protein complex, subunit gamma	AK147895|Copg|54161|coatomer protein complex, subunit gamma	AK151284|Copg|54161|coatomer protein complex, subunit gamma	AK151816|Copg|54161|coatomer protein complex, subunit gamma	AK153142|Copg|54161|coatomer protein complex, subunit gamma	AF187079|Copg|54161|coatomer protein complex, subunit gamma	NM_017477|Copg|54161|coatomer protein complex, subunit gamma	AK171950|Copg|54161|coatomer protein complex, subunit gamma	AK080451|Copg|54161|coatomer protein complex, subunit gamma	BC024686|Copg|54161|coatomer protein complex, subunit gamma	AK164280|Copg|54161|coatomer protein complex, subunit gamma	BC024896|Copg|54161|coatomer protein complex, subunit gamma	BC056168|Copg|54161|coatomer protein complex, subunit gamma	NM_201244|Copg|54161|coatomer protein complex, subunit gamma	AK049417|Copg|54161|coatomer protein complex, subunit gamma	AK077461|Copg|54161|coatomer protein complex, subunit gamma	AK018151|Copg|54161|coatomer protein complex, subunit gamma	AK187461|Copg|54161|coatomer protein complex, subunit gamma	AK206833|Copg|54161|coatomer protein complex, subunit gamma
mm9_v1_chr18_+_38456315_38456361	0.541827	NHLH1,2.p2	AK009783|Rnf14|56736|ring finger protein 14	AK010162|Rnf14|56736|ring finger protein 14	BC094250|Rnf14|56736|ring finger protein 14	AF249667|Rnf14|56736|ring finger protein 14	AK038986|Rnf14|56736|ring finger protein 14	BC054841|Rnf14|56736|ring finger protein 14
mm9_v1_chr13_+_109004589_109004634	0.541671	NHLH1,2.p2	AK049118|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	BC005602|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	NM_029001|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK050441|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK137668|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK018616|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)	AK037162|Elovl7|74559|ELOVL family member 7, elongation of long chain fatty acids (yeast)
mm9_v1_chr4_+_122860705_122860828	0.541667	NHLH1,2.p2	AK032591|Hpcal4|170638|hippocalcin-like 4	NM_174998|Hpcal4|170638|hippocalcin-like 4
mm9_v1_chr15_-_27611236_27611348	0.541377	NHLH1,2.p2	AK160030|Fam105a|223433|family with sequence similarity 105, member A	AK172362|Fam105a|223433|family with sequence similarity 105, member A	BC052328|Fam105a|223433|family with sequence similarity 105, member A	NM_198301|Fam105a|223433|family with sequence similarity 105, member A	AK152590|Fam105a|223433|family with sequence similarity 105, member A	AK150760|Fam105a|223433|family with sequence similarity 105, member A	AK152120|Fam105a|223433|family with sequence similarity 105, member A	AK036522|Fam105a|223433|family with sequence similarity 105, member A
mm9_v1_chr4_-_151235758_151235857	0.540727	NHLH1,2.p2	AK076589|Camta1|100072|calmodulin binding transcription activator 1	BC150740|Camta1|100072|calmodulin binding transcription activator 1	AK034038|Camta1|100072|calmodulin binding transcription activator 1	AK144150|Camta1|100072|calmodulin binding transcription activator 1	AK009988|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr6_-_136824277_136824306	0.539555	NHLH1,2.p2	BC069922|Mgp|17313|matrix Gla protein	BC036991|Mgp|17313|matrix Gla protein	BC079478|Mgp|17313|matrix Gla protein
mm9_v1_chr15_-_89011113_89011248	0.53903	NHLH1,2.p2	BC031202|Plxnb2|140570|plexin B2	AK154627|Plxnb2|140570|plexin B2	BC157960|Plxnb2|140570|plexin B2	BC157961|Plxnb2|140570|plexin B2	AK147538|Plxnb2|140570|plexin B2	NM_138749|Plxnb2|140570|plexin B2
mm9_v1_chr6_-_142456402_142456478	0.538937	NHLH1,2.p2	X51905|Ldhb|16832|lactate dehydrogenase B	AK002257|Ldhb|16832|lactate dehydrogenase B	BC087888|Ldhb|16832|lactate dehydrogenase B	BC046755|Ldhb|16832|lactate dehydrogenase B	NM_008492|Ldhb|16832|lactate dehydrogenase B	AK131637|Ldhb|16832|lactate dehydrogenase B	AK019391|Ldhb|16832|lactate dehydrogenase B
mm9_v1_chr12_+_109572514_109572610	0.538493	NHLH1,2.p2	BC018307|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	AK140740|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	AF094479|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1	NM_010010|Cyp46a1|13116|cytochrome P450, family 46, subfamily a, polypeptide 1
mm9_v1_chr14_+_79826199_79826317	0.53845	NHLH1,2.p2	AK135854|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	BC096019|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	NM_001024135|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7
mm9_v1_chr15_+_78427476_78427603	0.537643	NHLH1,2.p2	NM_028195|Cyth4|72318|cytohesin 4	BC139054|Cyth4|72318|cytohesin 4	BC139056|Cyth4|72318|cytohesin 4	BC145528|Cyth4|72318|cytohesin 4	AK220198|Cyth4|72318|cytohesin 4	AF079972|Cyth4|72318|cytohesin 4	AK036679|Cyth4|72318|cytohesin 4	AK152306|Cyth4|72318|cytohesin 4	AK157026|Cyth4|72318|cytohesin 4	AK152909|Cyth4|72318|cytohesin 4	AK030956|Cyth4|72318|cytohesin 4	AK151402|Cyth4|72318|cytohesin 4	BC018505|Cyth4|72318|cytohesin 4
mm9_v1_chr11_-_115992196_115992441	0.537419	NHLH1,2.p2	BC118954|Trim65|338364|tripartite motif-containing 65	BC118955|Trim65|338364|tripartite motif-containing 65	AK028857|Trim65|338364|tripartite motif-containing 65	BC057094|Trim65|338364|tripartite motif-containing 65	AK050080|Trim65|338364|tripartite motif-containing 65	AK047439|Trim65|338364|tripartite motif-containing 65	AK079982|Trim65|338364|tripartite motif-containing 65	NM_178802|Trim65|338364|tripartite motif-containing 65
mm9_v1_chr5_+_32761533_32761558	0.536811	NHLH1,2.p2	AK147112|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK157914|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr7_+_80885175_80885216	0.536587	NHLH1,2.p2	NM_001162532|Fam174b|100038347|family with sequence similarity 174, member B
mm9_v1_chr2_-_125331264_125331360	0.534113	NHLH1,2.p2	U19972|Fbn1|14118|fibrillin 1	AF007248|Fbn1|14118|fibrillin 1
mm9_v1_chr2_+_91490332_91490401	0.534095	NHLH1,2.p2	AK079048|Arhgap1|228359|Rho GTPase activating protein 1	BC089306|Arhgap1|228359|Rho GTPase activating protein 1	BC006592|Arhgap1|228359|Rho GTPase activating protein 1	AK085554|Arhgap1|228359|Rho GTPase activating protein 1
mm9_v1_chr9_-_21397188_21397310	0.533785	NHLH1,2.p2	BC002282|Yipf2|74766|Yip1 domain family, member 2	NM_138303|Yipf2|74766|Yip1 domain family, member 2	BC003289|Yipf2|74766|Yip1 domain family, member 2	AK033705|Yipf2|74766|Yip1 domain family, member 2	AK133631|Yipf2|74766|Yip1 domain family, member 2	AK004959|Yipf2|74766|Yip1 domain family, member 2
mm9_v1_chr16_-_13903174_13903239	0.533471	NHLH1,2.p2	AK054329|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	AK170661|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	NM_001039533|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1	NM_053181|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1
mm9_v1_chr12_-_88541249_88541271	0.533255	NHLH1,2.p2	BC150860|Tmed8|382620|transmembrane emp24 domain containing 8
mm9_v1_chr11_-_109472638_109472693	0.532327	NHLH1,2.p2	BC024883|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	BC024811|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr16_-_76373275_76373344	0.532231	NHLH1,2.p2	AK030495|Nrip1|268903|nuclear receptor interacting protein 1	AK041348|Nrip1|268903|nuclear receptor interacting protein 1	AK020076|Nrip1|268903|nuclear receptor interacting protein 1	AK036273|Nrip1|268903|nuclear receptor interacting protein 1	NM_173440|Nrip1|268903|nuclear receptor interacting protein 1
mm9_v1_chr11_+_115048783_115048880	0.532186	NHLH1,2.p2	NM_001033393|Tmem104|320534|transmembrane protein 104	AK171314|Tmem104|320534|transmembrane protein 104	AK155041|Tmem104|320534|transmembrane protein 104	AK040894|Tmem104|320534|transmembrane protein 104	AK171457|Tmem104|320534|transmembrane protein 104	AK167098|Tmem104|320534|transmembrane protein 104	AK049868|Tmem104|320534|transmembrane protein 104	BC140976|Tmem104|320534|transmembrane protein 104
mm9_v1_chr7_-_27963760_27963951	0.531827	NHLH1,2.p2	AB232592|Rab4b|19342|RAB4B, member RAS oncogene family	AK140513|Rab4b|19342|RAB4B, member RAS oncogene family	BC007147|Rab4b|19342|RAB4B, member RAS oncogene family	AF408432|Rab4b|19342|RAB4B, member RAS oncogene family	BC096654|Rab4b|19342|RAB4B, member RAS oncogene family	AK005314|Rab4b|19342|RAB4B, member RAS oncogene family	NM_029391|Rab4b|19342|RAB4B, member RAS oncogene family	AK170552|Rab4b|19342|RAB4B, member RAS oncogene family
mm9_v1_chr1_+_59030365_59030647	0.53173	NHLH1,2.p2	AK140272|Stradb|227154|STE20-related kinase adaptor beta	NM_172656|Stradb|227154|STE20-related kinase adaptor beta	AK036678|Stradb|227154|STE20-related kinase adaptor beta	BC055814|Stradb|227154|STE20-related kinase adaptor beta	AK046790|Stradb|227154|STE20-related kinase adaptor beta	AK080096|Stradb|227154|STE20-related kinase adaptor beta	AK035207|Stradb|227154|STE20-related kinase adaptor beta	AK086974|Stradb|227154|STE20-related kinase adaptor beta	BC037003|Stradb|227154|STE20-related kinase adaptor beta	BC060956|Stradb|227154|STE20-related kinase adaptor beta	AK146079|Stradb|227154|STE20-related kinase adaptor beta	AB057666|Stradb|227154|STE20-related kinase adaptor beta	AB057667|Stradb|227154|STE20-related kinase adaptor beta
mm9_v1_chr6_-_116143380_116143517	0.531307	NHLH1,2.p2	AK173022|Tmcc1|330401|transmembrane and coiled coil domains 1	NM_177412|Tmcc1|330401|transmembrane and coiled coil domains 1
mm9_v1_chr14_-_32019974_32020020	0.529201	NHLH1,2.p2	AK122412|Nisch|64652|nischarin	NM_022656|Nisch|64652|nischarin
mm9_v1_chr2_-_155340538_155340581	0.528926	NHLH1,2.p2	BC005772|Ggt7|207182|gamma-glutamyltransferase 7	AK032051|Ggt7|207182|gamma-glutamyltransferase 7	NM_144786|Ggt7|207182|gamma-glutamyltransferase 7
mm9_v1_chr12_+_70397795_70397847	0.528777	NHLH1,2.p2	
mm9_v1_chr9_+_110148568_110148708	0.528759	NHLH1,2.p2	AF461091|Cspg5|29873|chondroitin sulfate proteoglycan 5
mm9_v1_chr16_-_85173930_85173941	0.52857	NHLH1,2.p2	AK159718|App|11820|amyloid beta (A4) precursor protein	M18373|App|11820|amyloid beta (A4) precursor protein	U84012|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr8_-_23704176_23704284	0.52809	NHLH1,2.p2	BC004743|Vdac3|22335|voltage-dependent anion channel 3	BC089336|Vdac3|22335|voltage-dependent anion channel 3	AK161283|Vdac3|22335|voltage-dependent anion channel 3	AK083785|Vdac3|22335|voltage-dependent anion channel 3	AK150828|Vdac3|22335|voltage-dependent anion channel 3	AK169228|Vdac3|22335|voltage-dependent anion channel 3	AK150741|Vdac3|22335|voltage-dependent anion channel 3	AK159431|Vdac3|22335|voltage-dependent anion channel 3	AK167781|Vdac3|22335|voltage-dependent anion channel 3	AK168815|Vdac3|22335|voltage-dependent anion channel 3	U30839|Vdac3|22335|voltage-dependent anion channel 3	AK002296|Vdac3|22335|voltage-dependent anion channel 3	AK146957|Vdac3|22335|voltage-dependent anion channel 3	AK169099|Vdac3|22335|voltage-dependent anion channel 3	NM_001198998|Vdac3|22335|voltage-dependent anion channel 3	NM_011696|Vdac3|22335|voltage-dependent anion channel 3
mm9_v1_chr11_+_105451296_105451348	0.526449	NHLH1,2.p2	AK019982|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	NM_181071|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	AK051973|Tanc2|77097|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm9_v1_chr5_+_27143896_27143973	0.526448	NHLH1,2.p2	AF092507|Dpp6|13483|dipeptidylpeptidase 6	NM_010075|Dpp6|13483|dipeptidylpeptidase 6	AK082186|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr15_-_75672300_75672387	0.525992	NHLH1,2.p2	BC060682|Zc3h3|223642|zinc finger CCCH type containing 3	AJ516034|Zc3h3|223642|zinc finger CCCH type containing 3	BC111448|Zc3h3|223642|zinc finger CCCH type containing 3	NM_172121|Zc3h3|223642|zinc finger CCCH type containing 3	AK138281|Zc3h3|223642|zinc finger CCCH type containing 3
mm9_v1_chr1_+_60155090_60155124	0.52591	NHLH1,2.p2	AK044738|Carf|241066|calcium response factor	AK045594|Carf|241066|calcium response factor	AF454947|Carf|241066|calcium response factor	NM_139150|Carf|241066|calcium response factor
mm9_v1_chr19_-_5802596_5802674	0.525842	NHLH1,2.p2	AK020134|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK019083|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK084336|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK088913|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	EF177380|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK009681|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK028133|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr5_-_90312358_90312358	0.525769	NHLH1,2.p2	AK031900|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_001081401|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	NM_177872|Adamts3|330119|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3
mm9_v1_chr13_+_24893310_24893891	0.524842	NHLH1,2.p2	AK035718|BC005537|79555|cDNA sequence BC005537	NM_024473|BC005537|79555|cDNA sequence BC005537	AK078765|BC005537|79555|cDNA sequence BC005537	BC005537|BC005537|79555|cDNA sequence BC005537
mm9_v1_chr11_-_69828831_69828933	0.524519	NHLH1,2.p2	Z71189|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	AK076037|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	BC026559|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain	NM_017366|Acadvl|11370|acyl-Coenzyme A dehydrogenase, very long chain
mm9_v1_chr17_-_56279684_56279770	0.522821	NHLH1,2.p2	AK139358|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	AK143229|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	NM_001130456|Sema6b|20359|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm9_v1_chr5_+_75971011_75971052	0.522146	NHLH1,2.p2	NM_001122733|Kit|16590|kit oncogene	NM_021099|Kit|16590|kit oncogene	AK046795|Kit|16590|kit oncogene	AK047010|Kit|16590|kit oncogene	BC026713|Kit|16590|kit oncogene	BC075716|Kit|16590|kit oncogene	BC052457|Kit|16590|kit oncogene	Y00864|Kit|16590|kit oncogene	AY536430|Kit|16590|kit oncogene	AY536431|Kit|16590|kit oncogene
mm9_v1_chr2_+_179992126_179992142	0.521133	NHLH1,2.p2	BC027563|Rps21|66481|ribosomal protein S21	AK007850|Rps21|66481|ribosomal protein S21
mm9_v1_chrX_-_19868889_19868932	0.521106	NHLH1,2.p2	AK041169|Slc9a7|236727|solute carrier family 9 (sodium/hydrogen exchanger), member 7	NM_177353|Slc9a7|236727|solute carrier family 9 (sodium/hydrogen exchanger), member 7	BC058750|Slc9a7|236727|solute carrier family 9 (sodium/hydrogen exchanger), member 7	AK043187|Slc9a7|236727|solute carrier family 9 (sodium/hydrogen exchanger), member 7	AK078577|Slc9a7|236727|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm9_v1_chr8_-_26127376_26127404	0.520751	NHLH1,2.p2	AK122188|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	NM_007404|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr19_-_4283126_4283138	0.520727	NHLH1,2.p2	AK089186|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	AK155698|Ankrd13d|68423|ankyrin repeat domain 13 family, member D	NM_026720|Ankrd13d|68423|ankyrin repeat domain 13 family, member D
mm9_v1_chr2_+_118489015_118489059	0.520201	NHLH1,2.p2	AK158913|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6	AK158944|Pak6|214230|p21 protein (Cdc42/Rac)-activated kinase 6
mm9_v1_chr5_+_67137106_67137134	0.518917	NHLH1,2.p2	
mm9_v1_chr1_-_95698465_95698512	0.515473	NHLH1,2.p2	AK088416|Dtymk|21915|deoxythymidylate kinase	AK019445|Dtymk|21915|deoxythymidylate kinase	AK160747|Dtymk|21915|deoxythymidylate kinase	BC069902|Dtymk|21915|deoxythymidylate kinase	AK009220|Dtymk|21915|deoxythymidylate kinase	AK019288|Dtymk|21915|deoxythymidylate kinase	NM_001105667|Dtymk|21915|deoxythymidylate kinase	NM_023136|Dtymk|21915|deoxythymidylate kinase
mm9_v1_chr7_-_17200285_17200343	0.515027	NHLH1,2.p2	BC139459|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	BC139461|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147326|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	AK147688|Grlf1|232906|glucocorticoid receptor DNA binding factor 1	NM_172739|Grlf1|232906|glucocorticoid receptor DNA binding factor 1
mm9_v1_chr12_+_111685371_111685434	0.514105	NHLH1,2.p2	NM_001135001|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr9_-_56995928_56996111	0.513081	NHLH1,2.p2	AK155405|Neil1|72774|nei endonuclease VIII-like 1 (E. coli)	AK013322|Neil1|72774|nei endonuclease VIII-like 1 (E. coli)	BC043297|Neil1|72774|nei endonuclease VIII-like 1 (E. coli)	BC034873|Neil1|72774|nei endonuclease VIII-like 1 (E. coli)
mm9_v1_chr16_-_85120798_85120921	0.512529	NHLH1,2.p2	AK194233|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr2_-_154233715_154233739	0.512101	NHLH1,2.p2	AK037183|Snta1|20648|syntrophin, acidic 1
mm9_v1_chr8_+_11758376_11758449	0.511344	NHLH1,2.p2	AF247654|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)	AF343877|Arhgef7|54126|Rho guanine nucleotide exchange factor (GEF7)
mm9_v1_chr16_+_14361637_14361715	0.510386	NHLH1,2.p2	AK029876|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	NM_008576|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	AK150015|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	AK152781|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	BC090617|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1	AF022908|Abcc1|17250|ATP-binding cassette, sub-family C (CFTR/MRP), member 1
mm9_v1_chr15_-_97597988_97598129	0.510079	NHLH1,2.p2	AK142594|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK044566|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK169430|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	AK162003|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	BC020532|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177810|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_001177811|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3	NM_144850|Rapgef3|223864|Rap guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr3_-_101408495_101408631	0.509465	NHLH1,2.p2	BC033435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC033471|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025811|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC021496|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025627|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC042435|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC025618|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	NM_144900|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK088000|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK137001|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159279|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	AK159306|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC023794|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide	BC032187|Atp1a1|11928|ATPase, Na+/K+ transporting, alpha 1 polypeptide
mm9_v1_chr2_-_168055851_168055889	0.508687	NHLH1,2.p2	AB004789|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	BC061151|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	AK005268|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	AK008548|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	AK004834|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1	NM_010072|Dpm1|13480|dolichol-phosphate (beta-D) mannosyltransferase 1
mm9_v1_chr14_-_56503058_56503074	0.508673	NHLH1,2.p2	AK081085|Cbln3|56410|cerebellin 3 precursor protein	AF218379|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chr5_+_65498838_65498890	0.508532	NHLH1,2.p2	
mm9_v1_chr12_+_81745188_81745226	0.506889	NHLH1,2.p2	NM_026244|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK090062|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK080462|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	BC072655|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9	AK008025|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr1_+_123327625_123327651	0.505375	NHLH1,2.p2	AK142302|Ccdc93|70829|coiled-coil domain containing 93	NM_001025156|Ccdc93|70829|coiled-coil domain containing 93	NM_029955|Ccdc93|70829|coiled-coil domain containing 93	AK082581|Ccdc93|70829|coiled-coil domain containing 93
mm9_v1_chr10_+_120802099_120802365	0.505192	NHLH1,2.p2	AK040524|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK049162|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK054046|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	NM_029364|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK030773|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK135016|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK170791|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	BC055328|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK087265|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK149863|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165917|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK169485|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK165180|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK164907|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK083597|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK159562|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK197322|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK200155|Gns|75612|glucosamine (N-acetyl)-6-sulfatase	AK205939|Gns|75612|glucosamine (N-acetyl)-6-sulfatase
mm9_v1_chr10_+_96079634_96079769	0.504894	NHLH1,2.p2	NM_007569|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK162764|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK149547|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC018309|Btg1|12226|B-cell translocation gene 1, anti-proliferative	L16846|Btg1|12226|B-cell translocation gene 1, anti-proliferative	BC006834|Btg1|12226|B-cell translocation gene 1, anti-proliferative	AK181728|Btg1|12226|B-cell translocation gene 1, anti-proliferative
mm9_v1_chr17_-_57150708_57150759	0.504576	NHLH1,2.p2	BC003336|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	BC023081|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	NM_133801|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK168236|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK168243|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK013002|Gtf2f1|98053|general transcription factor IIF, polypeptide 1	AK078048|Gtf2f1|98053|general transcription factor IIF, polypeptide 1
mm9_v1_chr2_+_145686377_145686454	0.504025	NHLH1,2.p2	AK014548|Rin2|74030|Ras and Rab interactor 2	AK040763|Rin2|74030|Ras and Rab interactor 2	AK152025|Rin2|74030|Ras and Rab interactor 2	BC005529|Rin2|74030|Ras and Rab interactor 2	AK154421|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr17_-_32487506_32487542	0.50329	NHLH1,2.p2	BC046801|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	AB028921|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	BC062877|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	BC051015|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	NM_017476|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	AK011325|Akap8l|54194|A kinase (PRKA) anchor protein 8-like	AK166526|Akap8l|54194|A kinase (PRKA) anchor protein 8-like
mm9_v1_chr12_-_3309887_3309978	0.502857	NHLH1,2.p2	AK134988|Rab10|19325|RAB10, member RAS oncogene family	AK150791|Rab10|19325|RAB10, member RAS oncogene family	AK153325|Rab10|19325|RAB10, member RAS oncogene family	BC052735|Rab10|19325|RAB10, member RAS oncogene family	BC056374|Rab10|19325|RAB10, member RAS oncogene family	AK160960|Rab10|19325|RAB10, member RAS oncogene family	AK150319|Rab10|19325|RAB10, member RAS oncogene family	AK153315|Rab10|19325|RAB10, member RAS oncogene family	AK159988|Rab10|19325|RAB10, member RAS oncogene family	AK168320|Rab10|19325|RAB10, member RAS oncogene family	AK087964|Rab10|19325|RAB10, member RAS oncogene family	AK159383|Rab10|19325|RAB10, member RAS oncogene family	AK159845|Rab10|19325|RAB10, member RAS oncogene family	AK028320|Rab10|19325|RAB10, member RAS oncogene family	AK166010|Rab10|19325|RAB10, member RAS oncogene family	AK045299|Rab10|19325|RAB10, member RAS oncogene family	AK008725|Rab10|19325|RAB10, member RAS oncogene family	AK146357|Rab10|19325|RAB10, member RAS oncogene family	NM_016676|Rab10|19325|RAB10, member RAS oncogene family
mm9_v1_chr16_+_5885447_5885760	0.501933	NHLH1,2.p2	AB041596|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AK158194|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr11_-_116274264_116274379	0.5019	NHLH1,2.p2	AK011693|Rnf157|217340|ring finger protein 157	NM_027258|Rnf157|217340|ring finger protein 157
mm9_v1_chr8_+_63111621_63111675	0.500736	NHLH1,2.p2	AK089654|Mfap3l|71306|microfibrillar-associated protein 3-like	NM_027756|Mfap3l|71306|microfibrillar-associated protein 3-like	BC095950|Mfap3l|71306|microfibrillar-associated protein 3-like
mm9_v1_chr4_+_84851440_84851480	0.499384	NHLH1,2.p2	AF326561|Sh3gl2|20404|SH3-domain GRB2-like 2	AF326562|Sh3gl2|20404|SH3-domain GRB2-like 2
mm9_v1_chr10_+_57206509_57206656	0.499014	NHLH1,2.p2	
mm9_v1_chr7_-_112729716_112729793	0.497186	NHLH1,2.p2	AF206720|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK164140|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK083830|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr11_+_61770311_61770311	0.497175	NHLH1,2.p2	AK032662|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chr7_-_105457979_105458055	0.496822	NHLH1,2.p2	AK150629|Acer3|66190|alkaline ceramidase 3	AK080977|Acer3|66190|alkaline ceramidase 3	AK011668|Acer3|66190|alkaline ceramidase 3	NM_025408|Acer3|66190|alkaline ceramidase 3	AK004287|Acer3|66190|alkaline ceramidase 3	AK162403|Acer3|66190|alkaline ceramidase 3
mm9_v1_chr10_-_127806232_127806252	0.496752	NHLH1,2.p2	AK080862|Coq10a|210582|coenzyme Q10 homolog A (yeast)	BC147716|Coq10a|210582|coenzyme Q10 homolog A (yeast)	BC147722|Coq10a|210582|coenzyme Q10 homolog A (yeast)
mm9_v1_chrX_+_133527693_133527841	0.496363	NHLH1,2.p2	NM_001035509|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_001035510|Zcchc18|66995|zinc finger, CCHC domain containing 18	NM_025893|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK005317|Zcchc18|66995|zinc finger, CCHC domain containing 18	BC017627|Zcchc18|66995|zinc finger, CCHC domain containing 18	AK134856|Zcchc18|66995|zinc finger, CCHC domain containing 18
mm9_v1_chr13_-_67006250_67006288	0.496176	NHLH1,2.p2	AK008455|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK018769|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK168361|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	BC086921|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	BC100601|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK168855|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	BC031607|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	AK008945|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein	NM_026219|Uqcrb|67530|ubiquinol-cytochrome c reductase binding protein
mm9_v1_chr9_+_96619800_96619904	0.494473	NHLH1,2.p2	AK081067|Gm6328|622512|predicted gene 6328
mm9_v1_chr9_+_121619562_121619584	0.493643	NHLH1,2.p2	AK078209|Deb1|26901|differentially expressed in B16F10 1	AK085962|Deb1|26901|differentially expressed in B16F10 1
mm9_v1_chr15_-_39775498_39775574	0.491504	NHLH1,2.p2	BC058345|Lrp12|239393|low density lipoprotein-related protein 12
mm9_v1_chr1_+_179913535_179913568	0.490947	NHLH1,2.p2	AK139440|Gm16432|545391|predicted gene 16432
mm9_v1_chr9_-_102256962_102257026	0.490494	NHLH1,2.p2	BC057301|Ephb1|270190|Eph receptor B1	AK135018|Ephb1|270190|Eph receptor B1	AK033966|Ephb1|270190|Eph receptor B1	AK036211|Ephb1|270190|Eph receptor B1	AK082061|Ephb1|270190|Eph receptor B1	AK039530|Ephb1|270190|Eph receptor B1	NM_001168296|Ephb1|270190|Eph receptor B1	NM_173447|Ephb1|270190|Eph receptor B1
mm9_v1_chr1_+_36748379_36748424	0.488441	NHLH1,2.p2	BC005564|Cox5b|12859|cytochrome c oxidase, subunit Vb	BC099474|Cox5b|12859|cytochrome c oxidase, subunit Vb	AK135174|Cox5b|12859|cytochrome c oxidase, subunit Vb	AK008339|Cox5b|12859|cytochrome c oxidase, subunit Vb	AK131673|Cox5b|12859|cytochrome c oxidase, subunit Vb	X53157|Cox5b|12859|cytochrome c oxidase, subunit Vb	BC096048|Cox5b|12859|cytochrome c oxidase, subunit Vb
mm9_v1_chr5_-_104340164_104340287	0.488199	NHLH1,2.p2	AK034618|Klhl8|246293|kelch-like 8 (Drosophila)	AK031028|Klhl8|246293|kelch-like 8 (Drosophila)	NM_178741|Klhl8|246293|kelch-like 8 (Drosophila)
mm9_v1_chr15_+_99223377_99223451	0.486704	NHLH1,2.p2	NM_001171034|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_001171036|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	NM_026669|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK019865|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050299|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088030|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK088683|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK139901|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK159380|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK166935|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036782|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK036994|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK049604|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	AK050323|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6	BC005588|Tmbim6|110213|transmembrane BAX inhibitor motif containing 6
mm9_v1_chr6_+_83004642_83004658	0.486378	NHLH1,2.p2	AK154707|Aup1|11993|ancient ubiquitous protein 1	NM_007517|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr10_-_126648509_126648683	0.485894	NHLH1,2.p2	BC021383|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AB054591|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK148299|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	AK140079|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	NM_054097|Pip4k2c|117150|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma
mm9_v1_chr11_-_54769601_54769632	0.485445	NHLH1,2.p2	AK135338|Tnip1|57783|TNFAIP3 interacting protein 1
mm9_v1_chrX_-_34650263_34650340	0.484808	NHLH1,2.p2	AK019989|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC058761|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK162222|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK011606|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	AK145431|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	NM_026573|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117769|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)	BC117770|Upf3b|68134|UPF3 regulator of nonsense transcripts homolog B (yeast)
mm9_v1_chr14_+_69955194_69955282	0.483534	NHLH1,2.p2	NM_026174|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK045342|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK004761|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	AK042053|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC052090|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4	BC043134|Entpd4|67464|ectonucleoside triphosphate diphosphohydrolase 4
mm9_v1_chr7_-_134852110_134852201	0.483395	NHLH1,2.p2	Y11905|Bcl7c|12055|B-cell CLL/lymphoma 7C	BC058530|Bcl7c|12055|B-cell CLL/lymphoma 7C	AK131935|Bcl7c|12055|B-cell CLL/lymphoma 7C
mm9_v1_chrX_+_70728939_70728991	0.483348	NHLH1,2.p2	BC057185|Bgn|12111|biglycan	AK135496|Bgn|12111|biglycan	AK155973|Bgn|12111|biglycan	AK164867|Bgn|12111|biglycan	L20276|Bgn|12111|biglycan	NM_007542|Bgn|12111|biglycan	AK171870|Bgn|12111|biglycan	AK086920|Bgn|12111|biglycan	BC019502|Bgn|12111|biglycan	BC005452|Bgn|12111|biglycan
mm9_v1_chr13_+_43493729_43493803	0.482595	NHLH1,2.p2	NM_023554|Nol7|70078|nucleolar protein 7	AK008670|Nol7|70078|nucleolar protein 7	AK019972|Nol7|70078|nucleolar protein 7	AB041566|Nol7|70078|nucleolar protein 7	AK032963|Nol7|70078|nucleolar protein 7	BC130012|Nol7|70078|nucleolar protein 7	BC090637|Nol7|70078|nucleolar protein 7
mm9_v1_chr5_+_33721199_33721420	0.482534	NHLH1,2.p2	AK028507|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK040506|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	NM_001081101|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	AK156117|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	BC137803|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene	BC144920|4933407H18Rik|71101|RIKEN cDNA 4933407H18 gene
mm9_v1_chr4_-_57002965_57003009	0.482396	NHLH1,2.p2	AK038461|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene	AK078331|6430704M03Rik|230235|RIKEN cDNA 6430704M03 gene
mm9_v1_chr11_-_118770873_118770885	0.480944	NHLH1,2.p2	AK079086|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001024931|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039167|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3	NM_001039168|Rbfox3|52897|RNA binding protein, fox-1 homolog (C. elegans) 3
mm9_v1_chr8_-_108224992_108225001	0.480807	NHLH1,2.p2	NM_001012638|Acd|497652|adrenocortical dysplasia	AK170606|Acd|497652|adrenocortical dysplasia
mm9_v1_chr3_-_89049088_89049120	0.478797	NHLH1,2.p2	AK132368|Trim46|360213|tripartite motif-containing 46	AK170904|Trim46|360213|tripartite motif-containing 46	NM_001039466|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr15_-_89209682_89209731	0.478251	NHLH1,2.p2	BC087962|Odf3b|70113|outer dense fiber of sperm tails 3B	NM_001013022|Odf3b|70113|outer dense fiber of sperm tails 3B
mm9_v1_chr11_-_5641118_5641138	0.477382	NHLH1,2.p2	
mm9_v1_chr11_-_50745128_50745136	0.476704	NHLH1,2.p2	AK148756|Zfp354b|27274|zinc finger protein 354B	NM_013744|Zfp354b|27274|zinc finger protein 354B
mm9_v1_chr1_+_173341811_173341858	0.476237	NHLH1,2.p2	NM_009480|Usf1|22278|upstream transcription factor 1
mm9_v1_chr5_-_125342474_125342590	0.475805	NHLH1,2.p2	BC021492|Ccdc92|215707|coiled-coil domain containing 92	AK028192|Ccdc92|215707|coiled-coil domain containing 92	AK165371|Ccdc92|215707|coiled-coil domain containing 92	NM_144819|Ccdc92|215707|coiled-coil domain containing 92
mm9_v1_chr4_+_107474842_107475017	0.475628	NHLH1,2.p2	NM_001080926|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	D85463|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	BC127061|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	AJ312058|Lrp8|16975|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm9_v1_chr10_+_74675134_74675134	0.47523	NHLH1,2.p2	AB093236|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like	NM_001145826|Specc1l|74392|sperm antigen with calponin homology and coiled-coil domains 1-like
mm9_v1_chr4_-_133189327_133189466	0.47391	NHLH1,2.p2	NM_001017968|Zdhhc18|503610|zinc finger, DHHC domain containing 18
mm9_v1_chr6_+_49269294_49269328	0.473631	NHLH1,2.p2	AK159264|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr7_+_106774445_106774513	0.473538	NHLH1,2.p2	AK141001|Gm10605|100038557|predicted gene 10605
mm9_v1_chr11_+_58120557_58120580	0.472489	NHLH1,2.p2	AK170229|Zfp692|103836|zinc finger protein 692	AK080545|Zfp692|103836|zinc finger protein 692	NM_001040686|Zfp692|103836|zinc finger protein 692	NM_182996|Zfp692|103836|zinc finger protein 692
mm9_v1_chr9_+_20692618_20692740	0.472451	NHLH1,2.p2	NM_145610|Ppan|235036|peter pan homolog (Drosophila)	BC014688|Ppan|235036|peter pan homolog (Drosophila)	AK085695|Ppan|235036|peter pan homolog (Drosophila)	AK039027|Ppan|235036|peter pan homolog (Drosophila)	AK172615|Ppan|235036|peter pan homolog (Drosophila)	AK171672|Ppan|235036|peter pan homolog (Drosophila)	BC059277|Ppan|235036|peter pan homolog (Drosophila)
mm9_v1_chr5_-_149363603_149363821	0.47223	NHLH1,2.p2	AF044223|Ubl3|24109|ubiquitin-like 3	AK134598|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr11_-_119960005_119960044	0.472158	NHLH1,2.p2	AK154660|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	AK019105|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC137580|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC144724|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	NM_183137|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene
mm9_v1_chr7_-_142907978_142908008	0.471906	NHLH1,2.p2	AK082099|Mki67|17345|antigen identified by monoclonal antibody Ki 67	AK052772|Mki67|17345|antigen identified by monoclonal antibody Ki 67
mm9_v1_chr10_-_8238194_8238362	0.471828	NHLH1,2.p2	AK162950|Ust|338362|uronyl-2-sulfotransferase	BC138155|Ust|338362|uronyl-2-sulfotransferase
mm9_v1_chr15_-_77137301_77137357	0.471795	NHLH1,2.p2	AK077594|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr7_+_51502120_51502163	0.47178	NHLH1,2.p2	AK165177|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK010334|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK049154|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK169796|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK169836|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK172418|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	AK162303|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene	BC016099|2410002F23Rik|668661|RIKEN cDNA 2410002F23 gene
mm9_v1_chr8_-_107033781_107033809	0.471698	NHLH1,2.p2	BC113771|Ccdc79|320022|coiled-coil domain containing 79	BC129814|Ccdc79|320022|coiled-coil domain containing 79	AK029754|Ccdc79|320022|coiled-coil domain containing 79	NM_180958|Ccdc79|320022|coiled-coil domain containing 79	AK030157|Ccdc79|320022|coiled-coil domain containing 79
mm9_v1_chr16_-_85901306_85901312	0.470584	NHLH1,2.p2	AK020662|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr7_-_72515798_72515900	0.469727	NHLH1,2.p2	BC138028|Tjp1|21872|tight junction protein 1	BC145100|Tjp1|21872|tight junction protein 1
mm9_v1_chr8_-_124431245_124431547	0.469679	NHLH1,2.p2	AK148134|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB023409|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	AB017189|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr8_-_30329898_30330071	0.468763	NHLH1,2.p2	BC137615|Unc5d|210801|unc-5 homolog D (C. elegans)	BC144783|Unc5d|210801|unc-5 homolog D (C. elegans)	BC144784|Unc5d|210801|unc-5 homolog D (C. elegans)	BC145695|Unc5d|210801|unc-5 homolog D (C. elegans)	FJ824810|Unc5d|210801|unc-5 homolog D (C. elegans)
mm9_v1_chr3_-_30868320_30868353	0.468728	NHLH1,2.p2	BC132533|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145123|Phc3|241915|polyhomeotic-like 3 (Drosophila)	BC145124|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AJ414610|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK037348|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK087339|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166208|Phc3|241915|polyhomeotic-like 3 (Drosophila)	AK166296|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165954|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165955|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_001165956|Phc3|241915|polyhomeotic-like 3 (Drosophila)	NM_153421|Phc3|241915|polyhomeotic-like 3 (Drosophila)
mm9_v1_chr12_+_35731888_35731920	0.468596	NHLH1,2.p2	AK148157|Snx13|217463|sorting nexin 13	AK170737|Snx13|217463|sorting nexin 13	BC056394|Snx13|217463|sorting nexin 13
mm9_v1_chr16_-_22657283_22657317	0.467676	NHLH1,2.p2	AK083258|Dgkg|110197|diacylglycerol kinase, gamma	NM_138650|Dgkg|110197|diacylglycerol kinase, gamma
mm9_v1_chr15_-_58046380_58046399	0.466754	NHLH1,2.p2	BC027211|Fbxo32|67731|F-box protein 32	AK014612|Fbxo32|67731|F-box protein 32
mm9_v1_chr18_-_36675393_36675437	0.46619	NHLH1,2.p2	L07264|Hbegf|15200|heparin-binding EGF-like growth factor	AK145548|Hbegf|15200|heparin-binding EGF-like growth factor	AK160575|Hbegf|15200|heparin-binding EGF-like growth factor	BC089607|Hbegf|15200|heparin-binding EGF-like growth factor	AK052084|Hbegf|15200|heparin-binding EGF-like growth factor
mm9_v1_chr16_+_17276720_17276769	0.465885	NHLH1,2.p2	BC058760|Tmem191c|224019|transmembrane protein 191C
mm9_v1_chr5_+_135499346_135499452	0.465794	NHLH1,2.p2	BC100446|Stx1a|20907|syntaxin 1A (brain)	BC057892|Stx1a|20907|syntaxin 1A (brain)	D45208|Stx1a|20907|syntaxin 1A (brain)	NM_016801|Stx1a|20907|syntaxin 1A (brain)	BC047133|Stx1a|20907|syntaxin 1A (brain)
mm9_v1_chr16_+_11984205_11984205	0.465196	NHLH1,2.p2	AK012380|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_001174086|Shisa9|72555|shisa homolog 9 (Xenopus laevis)	NM_028277|Shisa9|72555|shisa homolog 9 (Xenopus laevis)
mm9_v1_chr7_-_59117613_59117656	0.463773	NHLH1,2.p2	NM_001115087|Fancf|100040608|Fanconi anemia, complementation group F
mm9_v1_chr1_-_79758277_79758343	0.463763	NHLH1,2.p2	AK220391|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK157204|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK005937|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK159710|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK165554|Wdfy1|69368|WD repeat and FYVE domain containing 1	AK007215|Wdfy1|69368|WD repeat and FYVE domain containing 1	NM_001111279|Wdfy1|69368|WD repeat and FYVE domain containing 1	NM_027057|Wdfy1|69368|WD repeat and FYVE domain containing 1
mm9_v1_chr5_+_93696645_93696792	0.463663	NHLH1,2.p2	BC060180|Ccng2|12452|cyclin G2	BC088980|Ccng2|12452|cyclin G2
mm9_v1_chr6_-_148392841_148392873	0.463491	NHLH1,2.p2	AK137545|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	AK046396|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1	NM_198967|Tmtc1|387314|transmembrane and tetratricopeptide repeat containing 1
mm9_v1_chr12_-_88225200_88225353	0.463254	NHLH1,2.p2	BC057128|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	BC063253|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene
mm9_v1_chr14_+_56109905_56110009	0.462825	NHLH1,2.p2	AK148355|Lrrc16b|268747|leucine rich repeat containing 16B	NM_001024645|Lrrc16b|268747|leucine rich repeat containing 16B	BC092223|Lrrc16b|268747|leucine rich repeat containing 16B	BC082805|Lrrc16b|268747|leucine rich repeat containing 16B
mm9_v1_chr11_+_16157685_16157805	0.461555	NHLH1,2.p2	AK033048|Vstm2a|211739|V-set and transmembrane domain containing 2A	NM_145967|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK032473|Vstm2a|211739|V-set and transmembrane domain containing 2A	BC027127|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK079096|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK137363|Vstm2a|211739|V-set and transmembrane domain containing 2A
mm9_v1_chr17_-_25969869_25969905	0.460401	NHLH1,2.p2	AK166630|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK158595|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr9_-_14185399_14185474	0.459817	NHLH1,2.p2	BC096490|Endod1|71946|endonuclease domain containing 1	AK079741|Endod1|71946|endonuclease domain containing 1	AK078056|Endod1|71946|endonuclease domain containing 1	BC019813|Endod1|71946|endonuclease domain containing 1	AK086102|Endod1|71946|endonuclease domain containing 1
mm9_v1_chr1_-_72921438_72921462	0.459545	NHLH1,2.p2	BC057447|Igfbp5|16011|insulin-like growth factor binding protein 5	NM_010518|Igfbp5|16011|insulin-like growth factor binding protein 5	AK142108|Igfbp5|16011|insulin-like growth factor binding protein 5
mm9_v1_chr12_+_78339802_78339856	0.459285	NHLH1,2.p2	AK157989|Fut8|53618|fucosyltransferase 8	AK133547|Fut8|53618|fucosyltransferase 8
mm9_v1_chr9_+_107904919_107905018	0.45846	NHLH1,2.p2	AK172921|Ip6k1|27399|inositol hexaphosphate kinase 1	AK037925|Ip6k1|27399|inositol hexaphosphate kinase 1	AK088872|Ip6k1|27399|inositol hexaphosphate kinase 1	BC053030|Ip6k1|27399|inositol hexaphosphate kinase 1	AK171310|Ip6k1|27399|inositol hexaphosphate kinase 1	AK166143|Ip6k1|27399|inositol hexaphosphate kinase 1	BC059006|Ip6k1|27399|inositol hexaphosphate kinase 1	NM_013785|Ip6k1|27399|inositol hexaphosphate kinase 1
mm9_v1_chr16_+_20733199_20733225	0.457538	NHLH1,2.p2	AF069501|Chrd|12667|chordin	NM_009893|Chrd|12667|chordin	BC145017|Chrd|12667|chordin	BC145018|Chrd|12667|chordin	BC145019|Chrd|12667|chordin	BC145696|Chrd|12667|chordin	AK077460|Chrd|12667|chordin	AK165339|Chrd|12667|chordin	AF096276|Chrd|12667|chordin	AK149445|Chrd|12667|chordin
mm9_v1_chr8_+_75247184_75247186	0.457344	NHLH1,2.p2	AK146847|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK159076|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AK169433|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_001113248|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	NM_009188|Sin3b|20467|transcriptional regulator, SIN3B (yeast)
mm9_v1_chr17_-_34161584_34161626	0.457064	NHLH1,2.p2	AK154962|Ring1|19763|ring finger protein 1	BC009070|Ring1|19763|ring finger protein 1	AK155509|Ring1|19763|ring finger protein 1	NM_009066|Ring1|19763|ring finger protein 1
mm9_v1_chr9_+_118387748_118387788	0.456863	NHLH1,2.p2	AK089817|Eomes|13813|eomesodermin homolog (Xenopus laevis)
mm9_v1_chr19_-_23522811_23522929	0.456353	NHLH1,2.p2	AK035566|Mamdc2|71738|MAM domain containing 2	NM_174857|Mamdc2|71738|MAM domain containing 2	BC042773|Mamdc2|71738|MAM domain containing 2	AK154219|Mamdc2|71738|MAM domain containing 2	AK004794|Mamdc2|71738|MAM domain containing 2
mm9_v1_chr13_+_55565627_55565671	0.456253	NHLH1,2.p2	NM_001030296|Prr7|432763|proline rich 7 (synaptic)	AK133129|Prr7|432763|proline rich 7 (synaptic)
mm9_v1_chr5_-_139626637_139626669	0.456154	NHLH1,2.p2	
mm9_v1_chr5_-_98459488_98459751	0.455586	NHLH1,2.p2	AK190386|Antxr2|71914|anthrax toxin receptor 2	AK207219|Antxr2|71914|anthrax toxin receptor 2	AK170655|Antxr2|71914|anthrax toxin receptor 2	AK171292|Antxr2|71914|anthrax toxin receptor 2	AK166124|Antxr2|71914|anthrax toxin receptor 2
mm9_v1_chr10_+_119645800_119645892	0.455337	NHLH1,2.p2	BC027637|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK039270|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK153442|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK162942|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	AK006207|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4	NM_026617|Tmbim4|68212|transmembrane BAX inhibitor motif containing 4
mm9_v1_chr10_-_17954752_17954810	0.454604	NHLH1,2.p2	AK028075|Ccdc28a|215814|coiled-coil domain containing 28A	BC013553|Ccdc28a|215814|coiled-coil domain containing 28A	BC027759|Ccdc28a|215814|coiled-coil domain containing 28A	AK148447|Ccdc28a|215814|coiled-coil domain containing 28A	NM_144820|Ccdc28a|215814|coiled-coil domain containing 28A
mm9_v1_chr5_-_149363829_149363890	0.453629	NHLH1,2.p2	AK198634|Ubl3|24109|ubiquitin-like 3
mm9_v1_chr11_-_106640755_106640876	0.451743	NHLH1,2.p2	AF177202|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	BC119131|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	BC144810|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK042777|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK041591|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK164730|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	AK169977|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit	NM_015810|Polg2|50776|polymerase (DNA directed), gamma 2, accessory subunit
mm9_v1_chr5_+_144670857_144670916	0.451332	NHLH1,2.p2	AK146365|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC139774|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC066110|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	NM_008886|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC058189|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK014190|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK017847|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK034866|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC086637|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC141287|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC022179|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	AK083049|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC083502|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)	BC110684|Pms2|18861|postmeiotic segregation increased 2 (S. cerevisiae)
mm9_v1_chr4_+_119487105_119487332	0.4513	NHLH1,2.p2	AY454348|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC058336|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	NM_010657|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	AY454345|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr12_+_81745254_81745279	0.450565	NHLH1,2.p2	BC043112|Slc39a9|328133|solute carrier family 39 (zinc transporter), member 9
mm9_v1_chr4_-_149148173_149148404	0.450119	NHLH1,2.p2	AK017628|Slc25a33|70556|solute carrier family 25, member 33	BC011293|Slc25a33|70556|solute carrier family 25, member 33	AK157423|Slc25a33|70556|solute carrier family 25, member 33	NM_027460|Slc25a33|70556|solute carrier family 25, member 33
mm9_v1_chr6_+_104443037_104443047	0.44987	NHLH1,2.p2	BC076594|Cntn6|53870|contactin 6	NM_017383|Cntn6|53870|contactin 6
mm9_v1_chr11_+_109224275_109224393	0.449672	NHLH1,2.p2	
mm9_v1_chr4_-_135429750_135429766	0.449294	NHLH1,2.p2	NM_026383|Pnrc2|52830|proline-rich nuclear receptor coactivator 2
mm9_v1_chr2_-_60801248_60801283	0.449229	NHLH1,2.p2	BC016501|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	AK147109|Rbms1|56878|RNA binding motif, single stranded interacting protein 1	NM_020296|Rbms1|56878|RNA binding motif, single stranded interacting protein 1
mm9_v1_chr12_-_110306368_110306444	0.448952	NHLH1,2.p2	AK158915|Begain|380785|brain-enriched guanylate kinase-associated	NM_001163175|Begain|380785|brain-enriched guanylate kinase-associated
mm9_v1_chr3_+_107989221_107989318	0.448932	NHLH1,2.p2	AK173118|Amigo1|229715|adhesion molecule with Ig like domain 1	NM_001004293|Amigo1|229715|adhesion molecule with Ig like domain 1	NM_146137|Amigo1|229715|adhesion molecule with Ig like domain 1	BC022907|Amigo1|229715|adhesion molecule with Ig like domain 1	AK035960|Amigo1|229715|adhesion molecule with Ig like domain 1	BC010598|Amigo1|229715|adhesion molecule with Ig like domain 1
mm9_v1_chr1_+_55293967_55294068	0.448931	NHLH1,2.p2	BC132343|Mars2|212679|methionine-tRNA synthetase 2 (mitochondrial)	BC137739|Mars2|212679|methionine-tRNA synthetase 2 (mitochondrial)	NM_175439|Mars2|212679|methionine-tRNA synthetase 2 (mitochondrial)	BC099669|Mars2|212679|methionine-tRNA synthetase 2 (mitochondrial)	AK050196|Mars2|212679|methionine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr2_-_102241053_102241195	0.448705	NHLH1,2.p2	AJ278191|Trim44|80985|tripartite motif-containing 44	NM_020267|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr4_-_102887744_102887832	0.448684	NHLH1,2.p2	AK140305|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm9_v1_chr3_-_80717578_80717587	0.448521	NHLH1,2.p2	AK082578|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr4_-_151235861_151235879	0.448454	NHLH1,2.p2	AK158710|Camta1|100072|calmodulin binding transcription activator 1	NM_001081557|Camta1|100072|calmodulin binding transcription activator 1	NM_001195565|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr1_-_21951497_21951661	0.447743	NHLH1,2.p2	AF263836|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5	AY679158|Kcnq5|226922|potassium voltage-gated channel, subfamily Q, member 5
mm9_v1_chr5_+_8798145_8798190	0.447686	NHLH1,2.p2	AK030328|Abcb1b|18669|ATP-binding cassette, sub-family B (MDR/TAP), member 1B	NM_011075|Abcb1b|18669|ATP-binding cassette, sub-family B (MDR/TAP), member 1B	M14757|Abcb1b|18669|ATP-binding cassette, sub-family B (MDR/TAP), member 1B	BC141363|Abcb1b|18669|ATP-binding cassette, sub-family B (MDR/TAP), member 1B	BC150811|Abcb1b|18669|ATP-binding cassette, sub-family B (MDR/TAP), member 1B
mm9_v1_chr2_-_127346987_127347085	0.44708	NHLH1,2.p2	AF274050|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	DQ148499|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF300870|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC057329|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC026980|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	BC047139|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AK165711|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF184624|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr8_+_14888903_14889091	0.44667	NHLH1,2.p2	AK080049|Cln8|26889|ceroid-lipofuscinosis, neuronal 8	AF125307|Cln8|26889|ceroid-lipofuscinosis, neuronal 8	AF125308|Cln8|26889|ceroid-lipofuscinosis, neuronal 8	AK207099|Cln8|26889|ceroid-lipofuscinosis, neuronal 8
mm9_v1_chr17_-_80295336_80295462	0.444861	NHLH1,2.p2	AK135988|Atl2|56298|atlastin GTPase 2	BC060501|Atl2|56298|atlastin GTPase 2	NM_019717|Atl2|56298|atlastin GTPase 2	AK038697|Atl2|56298|atlastin GTPase 2	AK043907|Atl2|56298|atlastin GTPase 2	AK008381|Atl2|56298|atlastin GTPase 2	NM_178050|Atl2|56298|atlastin GTPase 2
mm9_v1_chr4_-_106136553_106136700	0.444518	NHLH1,2.p2	AY273821|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9
mm9_v1_chr11_-_72303447_72303476	0.444492	NHLH1,2.p2	AK156007|Spns2|216892|spinster homolog 2 (Drosophila)
mm9_v1_chr2_-_26092876_26092939	0.443961	NHLH1,2.p2	AK157992|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK140324|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	AK165642|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	BC030934|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2	NM_153559|Qsox2|227638|quiescin Q6 sulfhydryl oxidase 2
mm9_v1_chr12_-_112910475_112910550	0.443729	NHLH1,2.p2	BC106109|Ckb|12709|creatine kinase, brain	BC015271|Ckb|12709|creatine kinase, brain	AK014299|Ckb|12709|creatine kinase, brain	BC058257|Ckb|12709|creatine kinase, brain	AK148885|Ckb|12709|creatine kinase, brain	AK152388|Ckb|12709|creatine kinase, brain	AK153484|Ckb|12709|creatine kinase, brain	AK161990|Ckb|12709|creatine kinase, brain	AK002467|Ckb|12709|creatine kinase, brain	AK165779|Ckb|12709|creatine kinase, brain	AK166980|Ckb|12709|creatine kinase, brain	AK167034|Ckb|12709|creatine kinase, brain	NM_021273|Ckb|12709|creatine kinase, brain
mm9_v1_chr14_+_56210544_56210720	0.443562	NHLH1,2.p2	AK156320|Rnf31|268749|ring finger protein 31	AK157962|Rnf31|268749|ring finger protein 31	BC057595|Rnf31|268749|ring finger protein 31	NM_194346|Rnf31|268749|ring finger protein 31	BC031509|Rnf31|268749|ring finger protein 31	AY283085|Rnf31|268749|ring finger protein 31
mm9_v1_chr7_-_4610179_4610267	0.441799	NHLH1,2.p2	BC141039|Ppp6r1|243819|protein phosphatase 6, regulatory subunit 1
mm9_v1_chr1_-_95532270_95532276	0.441736	NHLH1,2.p2	AK148041|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr2_+_181255274_181255384	0.440961	NHLH1,2.p2	BC012268|Dnajc5|13002|DnaJ (Hsp40) homolog, subfamily C, member 5
mm9_v1_chr7_+_26091105_26091184	0.440867	NHLH1,2.p2	AK081054|Tmem145|330485|transmembrane protein 145	NM_183311|Tmem145|330485|transmembrane protein 145
mm9_v1_chr11_+_115891591_115891668	0.439741	NHLH1,2.p2	AK077635|Unk|217331|unkempt homolog (Drosophila)	AK046395|Unk|217331|unkempt homolog (Drosophila)	NM_172569|Unk|217331|unkempt homolog (Drosophila)	AK078095|Unk|217331|unkempt homolog (Drosophila)	AK129438|Unk|217331|unkempt homolog (Drosophila)
mm9_v1_chr4_-_9596206_9596308	0.437542	NHLH1,2.p2	BC015281|Asph|65973|aspartate-beta-hydroxylase	AF289486|Asph|65973|aspartate-beta-hydroxylase	AF289487|Asph|65973|aspartate-beta-hydroxylase	AF289488|Asph|65973|aspartate-beta-hydroxylase	AK030293|Asph|65973|aspartate-beta-hydroxylase	AK032420|Asph|65973|aspartate-beta-hydroxylase	AK151787|Asph|65973|aspartate-beta-hydroxylase	AK049506|Asph|65973|aspartate-beta-hydroxylase	AK139566|Asph|65973|aspartate-beta-hydroxylase	AK160984|Asph|65973|aspartate-beta-hydroxylase	AK165260|Asph|65973|aspartate-beta-hydroxylase	BC061098|Asph|65973|aspartate-beta-hydroxylase	NM_001177849|Asph|65973|aspartate-beta-hydroxylase	NM_001177850|Asph|65973|aspartate-beta-hydroxylase	NM_001177851|Asph|65973|aspartate-beta-hydroxylase	NM_001177855|Asph|65973|aspartate-beta-hydroxylase	NM_001177856|Asph|65973|aspartate-beta-hydroxylase	NM_023066|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr15_-_66663390_66663390	0.436499	NHLH1,2.p2	AK036167|Sla|20491|src-like adaptor	NM_001029841|Sla|20491|src-like adaptor
mm9_v1_chr2_+_179777363_179777404	0.435244	NHLH1,2.p2	BC053087|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr10_+_13686829_13686966	0.433937	NHLH1,2.p2	AK040673|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK172056|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chr7_+_19576593_19576667	0.433916	NHLH1,2.p2	NM_145579|Mypop|232934|Myb-related transcription factor, partner of profilin	M82902|Mypop|232934|Myb-related transcription factor, partner of profilin	AF364868|Mypop|232934|Myb-related transcription factor, partner of profilin
mm9_v1_chr11_+_80290571_80290592	0.432357	NHLH1,2.p2	AK043203|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	AK084003|Cdk5r1|12569|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm9_v1_chr4_-_46416895_46416973	0.432203	NHLH1,2.p2	AK077692|Hemgn|93966|hemogen	AY699986|Hemgn|93966|hemogen	AK156536|Hemgn|93966|hemogen	AK171890|Hemgn|93966|hemogen	AK172421|Hemgn|93966|hemogen
mm9_v1_chr16_-_17405946_17405956	0.432054	NHLH1,2.p2	AK134904|Pi4ka|224020|phosphatidylinositol 4-kinase, catalytic, alpha polypeptide
mm9_v1_chr4_-_151851574_151851597	0.431818	NHLH1,2.p2	BC039178|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	NM_010598|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2	U31908|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr19_+_60831889_60831889	0.431749	NHLH1,2.p2	BC085512|Nanos1|332397|nanos homolog 1 (Drosophila)	NM_178421|Nanos1|332397|nanos homolog 1 (Drosophila)
mm9_v1_chr2_-_25463924_25464009	0.430685	NHLH1,2.p2	BC085507|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	NM_001024616|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC021476|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC020111|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081440|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK171643|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC058585|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC023692|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	BC051138|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK045520|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK081397|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK157020|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK077311|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene	AK143678|B230208H17Rik|227624|RIKEN cDNA B230208H17 gene
mm9_v1_chr5_-_131783731_131783795	0.429794	NHLH1,2.p2	AK051382|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)	AK051281|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)
mm9_v1_chr2_+_168056104_168056142	0.429057	NHLH1,2.p2	NM_001160330|Mocs3|69372|molybdenum cofactor synthesis 3
mm9_v1_chr17_+_22099525_22099724	0.428897	NHLH1,2.p2	AK036434|Zfp943|74670|zinc finger prtoein 943	NM_001025373|Zfp943|74670|zinc finger prtoein 943	AK015297|Zfp943|74670|zinc finger prtoein 943	BC038865|Zfp943|74670|zinc finger prtoein 943	BC066031|Zfp943|74670|zinc finger prtoein 943
mm9_v1_chr11_+_49944855_49944942	0.428775	NHLH1,2.p2	NM_029745|Tbc1d9b|76795|TBC1 domain family, member 9B	BC062928|Tbc1d9b|76795|TBC1 domain family, member 9B	AK166472|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065080|Tbc1d9b|76795|TBC1 domain family, member 9B	AK035457|Tbc1d9b|76795|TBC1 domain family, member 9B	AK147964|Tbc1d9b|76795|TBC1 domain family, member 9B	AK049999|Tbc1d9b|76795|TBC1 domain family, member 9B	BC065130|Tbc1d9b|76795|TBC1 domain family, member 9B	AK172999|Tbc1d9b|76795|TBC1 domain family, member 9B
mm9_v1_chr9_+_95459990_95460369	0.428672	NHLH1,2.p2	AY424298|Paqr9|75552|progestin and adipoQ receptor family member IX	NM_198414|Paqr9|75552|progestin and adipoQ receptor family member IX	AK133021|Paqr9|75552|progestin and adipoQ receptor family member IX
mm9_v1_chr19_+_10116001_10116070	0.428337	NHLH1,2.p2	NM_021890|Fads3|60527|fatty acid desaturase 3	AK090042|Fads3|60527|fatty acid desaturase 3	AK172509|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr16_-_32868355_32868453	0.428085	NHLH1,2.p2	BC057307|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK042428|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170223|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK122221|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK030368|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC060601|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	NM_172615|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK170002|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	AK171583|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene	BC067390|1700021K19Rik|100502698|RIKEN cDNA 1700021K19 gene
mm9_v1_chr1_-_54614455_54614507	0.427182	NHLH1,2.p2	AK138171|Pgap1|241062|post-GPI attachment to proteins 1	AK051360|Pgap1|241062|post-GPI attachment to proteins 1
mm9_v1_chr6_+_115085096_115085107	0.426674	NHLH1,2.p2	BC066004|Syn2|20965|synapsin II	BC085129|Syn2|20965|synapsin II
mm9_v1_chr15_-_36426543_36426556	0.426542	NHLH1,2.p2	BC035553|Ankrd46|68839|ankyrin repeat domain 46	NM_175134|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr8_+_72758454_72758471	0.424947	NHLH1,2.p2	BC057305|Sugp2|234373|SURP and G patch domain containing 2
mm9_v1_chr2_-_28910578_28910585	0.424864	NHLH1,2.p2	AK028093|1700101E01Rik|329375|RIKEN cDNA 1700101E01 gene	BC147760|1700101E01Rik|329375|RIKEN cDNA 1700101E01 gene	BC147761|1700101E01Rik|329375|RIKEN cDNA 1700101E01 gene	NM_001085514|1700101E01Rik|329375|RIKEN cDNA 1700101E01 gene	NM_001166705|1700101E01Rik|329375|RIKEN cDNA 1700101E01 gene
mm9_v1_chr12_-_68323528_68323535	0.42465	NHLH1,2.p2	AK034513|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	AK137667|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_001193266|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2	NM_207010|Mdga2|320772|MAM domain containing glycosylphosphatidylinositol anchor 2
mm9_v1_chr17_+_24806616_24806711	0.424135	NHLH1,2.p2	AK131127|Zfp598|213753|zinc finger protein 598	BC050859|Zfp598|213753|zinc finger protein 598	NM_183149|Zfp598|213753|zinc finger protein 598
mm9_v1_chr4_-_126002442_126002551	0.424121	NHLH1,2.p2	AB027138|Tekt2|24084|tektin 2	NM_011902|Tekt2|24084|tektin 2	BC008140|Tekt2|24084|tektin 2
mm9_v1_chr4_-_132440285_132440436	0.424054	NHLH1,2.p2	AK167087|Stx12|100226|syntaxin 12	AB019211|Stx12|100226|syntaxin 12	AK168753|Stx12|100226|syntaxin 12	AK078948|Stx12|100226|syntaxin 12	AK132618|Stx12|100226|syntaxin 12	AK167804|Stx12|100226|syntaxin 12	BC010669|Stx12|100226|syntaxin 12	AK076390|Stx12|100226|syntaxin 12	AK146735|Stx12|100226|syntaxin 12	AK077678|Stx12|100226|syntaxin 12	NM_133887|Stx12|100226|syntaxin 12	AK146544|Stx12|100226|syntaxin 12	AK170203|Stx12|100226|syntaxin 12
mm9_v1_chr7_-_87547589_87547748	0.423673	NHLH1,2.p2	L26489|Furin|18550|furin (paired basic amino acid cleaving enzyme)	NM_011046|Furin|18550|furin (paired basic amino acid cleaving enzyme)
mm9_v1_chr2_+_31543895_31544075	0.422719	NHLH1,2.p2	AK083248|Abl1|11350|c-abl oncogene 1, non-receptor tyrosine kinase	AK166210|Abl1|11350|c-abl oncogene 1, non-receptor tyrosine kinase	AK090247|Abl1|11350|c-abl oncogene 1, non-receptor tyrosine kinase	AK166028|Abl1|11350|c-abl oncogene 1, non-receptor tyrosine kinase	AK088252|Abl1|11350|c-abl oncogene 1, non-receptor tyrosine kinase	NM_001112703|Abl1|11350|c-abl oncogene 1, non-receptor tyrosine kinase
mm9_v1_chr4_-_149329097_149329154	0.42267	NHLH1,2.p2	AK089767|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK160081|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK172334|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	BC046787|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	BC057563|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	NM_029035|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK030417|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK047726|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK003707|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1	AK040909|Spsb1|74646|splA/ryanodine receptor domain and SOCS box containing 1
mm9_v1_chr2_-_104250490_104250490	0.422619	NHLH1,2.p2	NM_001033347|D430041D05Rik|241589|RIKEN cDNA D430041D05 gene
mm9_v1_chr11_+_100931369_100931476	0.421634	NHLH1,2.p2	AK143546|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	NM_013792|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK170758|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK158045|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	AK164125|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	BC055733|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	U85247|Naglu|27419|alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
mm9_v1_chr10_-_75807976_75808035	0.421594	NHLH1,2.p2	AK052899|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	NM_001081419|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)	AK050040|Dip2a|64451|DIP2 disco-interacting protein 2 homolog A (Drosophila)
mm9_v1_chr16_+_38089607_38089652	0.420979	NHLH1,2.p2	AK154293|Gsk3b|56637|glycogen synthase kinase 3 beta	AK170965|Gsk3b|56637|glycogen synthase kinase 3 beta
mm9_v1_chr9_-_53916173_53916217	0.420823	NHLH1,2.p2	AK036953|Tnfaip8l3|244882|tumor necrosis factor, alpha-induced protein 8-like 3	AK154109|Tnfaip8l3|244882|tumor necrosis factor, alpha-induced protein 8-like 3	AK170374|Tnfaip8l3|244882|tumor necrosis factor, alpha-induced protein 8-like 3	BC119769|Tnfaip8l3|244882|tumor necrosis factor, alpha-induced protein 8-like 3	BC118003|Tnfaip8l3|244882|tumor necrosis factor, alpha-induced protein 8-like 3	AK171174|Tnfaip8l3|244882|tumor necrosis factor, alpha-induced protein 8-like 3	NM_001033535|Tnfaip8l3|244882|tumor necrosis factor, alpha-induced protein 8-like 3
mm9_v1_chr2_+_113839219_113839495	0.42064	NHLH1,2.p2	AK082668|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK045761|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK043120|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK044743|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK046235|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene	AK045885|A530058N18Rik|320846|RIKEN cDNA A530058N18 gene
mm9_v1_chr5_-_123183537_123183571	0.420601	NHLH1,2.p2	AK213252|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr2_-_25978296_25978309	0.419874	NHLH1,2.p2	BC022103|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	AK002651|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr7_-_88851662_88851783	0.418945	NHLH1,2.p2	AJ012076|Homer2|26557|homer homolog 2 (Drosophila)
mm9_v1_chr4_-_140991985_140992019	0.418801	NHLH1,2.p2	BC147054|Gm694|277744|predicted gene 694	BC147055|Gm694|277744|predicted gene 694	AK145525|Gm694|277744|predicted gene 694	NM_001033374|Gm694|277744|predicted gene 694
mm9_v1_chr1_+_75139300_75139429	0.418283	NHLH1,2.p2	AK034667|Fam134a|227298|family with sequence similarity 134, member A	NM_170755|Fam134a|227298|family with sequence similarity 134, member A	AK172093|Fam134a|227298|family with sequence similarity 134, member A	BC070406|Fam134a|227298|family with sequence similarity 134, member A	AK165957|Fam134a|227298|family with sequence similarity 134, member A	AK160400|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr12_-_99497634_99497668	0.41828	NHLH1,2.p2	AK154760|Galc|14420|galactosylceramidase
mm9_v1_chr7_+_134388006_134388047	0.417938	NHLH1,2.p2	AK090240|Zfp771|244216|zinc finger protein 771	NM_177362|Zfp771|244216|zinc finger protein 771	AK159461|Zfp771|244216|zinc finger protein 771
mm9_v1_chr9_-_44128228_44128398	0.41724	NHLH1,2.p2	BC060156|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK039220|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK153804|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	NM_027909|C2cd2l|71764|C2 calcium-dependent domain containing 2-like	AK004920|C2cd2l|71764|C2 calcium-dependent domain containing 2-like
mm9_v1_chr11_+_60351159_60351225	0.415978	NHLH1,2.p2	NM_172943|Alkbh5|268420|alkB, alkylation repair homolog 5 (E. coli)
mm9_v1_chr16_-_31948480_31948624	0.415262	NHLH1,2.p2	AK002881|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	BC021536|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK011122|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK002600|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK009191|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene	AK146135|0610012G03Rik|106264|RIKEN cDNA 0610012G03 gene
mm9_v1_chr6_-_146583036_146583144	0.414691	NHLH1,2.p2	BC023389|Tm7sf3|67623|transmembrane 7 superfamily member 3	DQ104329|Tm7sf3|67623|transmembrane 7 superfamily member 3	AK171111|Tm7sf3|67623|transmembrane 7 superfamily member 3	AK154633|Tm7sf3|67623|transmembrane 7 superfamily member 3	NM_026281|Tm7sf3|67623|transmembrane 7 superfamily member 3
mm9_v1_chr1_+_135260143_135260212	0.414549	NHLH1,2.p2	NM_175443|Etnk2|214253|ethanolamine kinase 2	BC152310|Etnk2|214253|ethanolamine kinase 2
mm9_v1_chr16_+_15887375_15887382	0.413969	NHLH1,2.p2	AK053190|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	AK151958|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	AK156762|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	BC139293|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta	NM_007679|Cebpd|12609|CCAAT/enhancer binding protein (C/EBP), delta
mm9_v1_chr8_+_41509109_41509241	0.413703	NHLH1,2.p2	AK030662|Zdhhc2|70546|zinc finger, DHHC domain containing 2	NM_178395|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK136296|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK046533|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK044652|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC117761|Zdhhc2|70546|zinc finger, DHHC domain containing 2	BC127156|Zdhhc2|70546|zinc finger, DHHC domain containing 2	AK018284|Zdhhc2|70546|zinc finger, DHHC domain containing 2
mm9_v1_chr2_+_119177025_119177036	0.412583	NHLH1,2.p2	AK007378|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)	BC025169|Chac1|69065|ChaC, cation transport regulator-like 1 (E. coli)
mm9_v1_chr6_+_124758919_124758969	0.412055	NHLH1,2.p2	NM_013539|Spsb2|14794|splA/ryanodine receptor domain and SOCS box containing 2
mm9_v1_chr1_-_178744138_178744216	0.41149	NHLH1,2.p2	BC054781|Cep170|545389|centrosomal protein 170	BC057019|Cep170|545389|centrosomal protein 170
mm9_v1_chr4_-_141179720_141179764	0.410543	NHLH1,2.p2	BC089627|Slc25a34|384071|solute carrier family 25, member 34	AK085913|Slc25a34|384071|solute carrier family 25, member 34	AK142924|Slc25a34|384071|solute carrier family 25, member 34	NM_001013780|Slc25a34|384071|solute carrier family 25, member 34
mm9_v1_chr2_-_164630347_164630363	0.410382	NHLH1,2.p2	AK033724|Acot8|170789|acyl-CoA thioesterase 8	BC005792|Acot8|170789|acyl-CoA thioesterase 8	AK151924|Acot8|170789|acyl-CoA thioesterase 8
mm9_v1_chr8_-_27087111_27087235	0.410292	NHLH1,2.p2	BC024084|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK160068|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK159649|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK035264|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK152926|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	AK149883|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase	NM_029884|Hgsnat|52120|heparan-alpha-glucosaminide N-acetyltransferase
mm9_v1_chr6_+_114081375_114081412	0.41018	NHLH1,2.p2	AK053261|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11	AK021402|Slc6a11|243616|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm9_v1_chr4_-_70195870_70195917	0.409808	NHLH1,2.p2	BC088994|Megf9|230316|multiple EGF-like-domains 9	BC138128|Megf9|230316|multiple EGF-like-domains 9	BC138129|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr2_-_143836838_143837031	0.40968	NHLH1,2.p2	BC002105|Rrbp1|81910|ribosome binding protein 1	AF273683|Rrbp1|81910|ribosome binding protein 1	AF273684|Rrbp1|81910|ribosome binding protein 1	AF273685|Rrbp1|81910|ribosome binding protein 1	AF273686|Rrbp1|81910|ribosome binding protein 1	AF273687|Rrbp1|81910|ribosome binding protein 1	AF273688|Rrbp1|81910|ribosome binding protein 1	AF273689|Rrbp1|81910|ribosome binding protein 1	AF273690|Rrbp1|81910|ribosome binding protein 1	AF273691|Rrbp1|81910|ribosome binding protein 1	AF273692|Rrbp1|81910|ribosome binding protein 1	AF273693|Rrbp1|81910|ribosome binding protein 1	BC031452|Rrbp1|81910|ribosome binding protein 1	AK039114|Rrbp1|81910|ribosome binding protein 1	NM_024281|Rrbp1|81910|ribosome binding protein 1	NM_133626|Rrbp1|81910|ribosome binding protein 1
mm9_v1_chr13_-_100785524_100785589	0.409348	NHLH1,2.p2	BC027640|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146865|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK145564|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK146844|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141193|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	BC141194|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	AK132265|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chr7_-_31230577_31230646	0.409061	NHLH1,2.p2	BC021877|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	NM_007467|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr19_+_10116104_10116185	0.408779	NHLH1,2.p2	BC071266|Fads3|60527|fatty acid desaturase 3	AK154534|Fads3|60527|fatty acid desaturase 3	AK029318|Fads3|60527|fatty acid desaturase 3	AK080414|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr8_+_72826656_72826705	0.407997	NHLH1,2.p2	AK003458|Cope|59042|coatomer protein complex, subunit epsilon	AK140753|Cope|59042|coatomer protein complex, subunit epsilon	BC009170|Cope|59042|coatomer protein complex, subunit epsilon	AB039837|Cope|59042|coatomer protein complex, subunit epsilon	NM_021538|Cope|59042|coatomer protein complex, subunit epsilon	AK083279|Cope|59042|coatomer protein complex, subunit epsilon	BC057328|Cope|59042|coatomer protein complex, subunit epsilon	BC083336|Cope|59042|coatomer protein complex, subunit epsilon
mm9_v1_chr8_-_72963464_72963487	0.406352	NHLH1,2.p2	AK129173|Crtc1|382056|CREB regulated transcription coactivator 1	BC080308|Crtc1|382056|CREB regulated transcription coactivator 1	NM_001004062|Crtc1|382056|CREB regulated transcription coactivator 1	BC056137|Crtc1|382056|CREB regulated transcription coactivator 1	BC068139|Crtc1|382056|CREB regulated transcription coactivator 1
mm9_v1_chr2_+_83652779_83652844	0.406069	NHLH1,2.p2	AK038899|Fam171b|241520|family with sequence similarity 171, member B
mm9_v1_chr3_+_95697820_95698061	0.405621	NHLH1,2.p2	AK148400|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC057865|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	AK152334|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC012406|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	NM_146104|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	BC024111|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)	NM_146134|Aph1a|226548|anterior pharynx defective 1a homolog (C. elegans)
mm9_v1_chr17_+_24551840_24552094	0.405593	NHLH1,2.p2	X70067|Rnps1|19826|ribonucleic acid binding protein S1	AK206201|Rnps1|19826|ribonucleic acid binding protein S1
mm9_v1_chr11_+_75007300_75007314	0.404963	NHLH1,2.p2	BC030471|Rtn4rl1|237847|reticulon 4 receptor-like 1
mm9_v1_chr12_+_85328810_85328840	0.403135	NHLH1,2.p2	NM_134188|Acot2|171210|acyl-CoA thioesterase 2	AK172617|Acot2|171210|acyl-CoA thioesterase 2	AK141651|Acot2|171210|acyl-CoA thioesterase 2	BC064469|Acot2|171210|acyl-CoA thioesterase 2
mm9_v1_chr11_+_82202401_82202479	0.403004	NHLH1,2.p2	NM_023438|Tmem132e|270893|transmembrane protein 132E	BC137906|Tmem132e|270893|transmembrane protein 132E	BC145026|Tmem132e|270893|transmembrane protein 132E
mm9_v1_chr8_+_75095914_75096060	0.402659	NHLH1,2.p2	AK157969|Tmem38a|74166|transmembrane protein 38A	AK165818|Tmem38a|74166|transmembrane protein 38A	EF988666|Tmem38a|74166|transmembrane protein 38A	BC014728|Tmem38a|74166|transmembrane protein 38A	AK034868|Nwd1|319555|NACHT and WD repeat domain containing 1	BC024788|Tmem38a|74166|transmembrane protein 38A	NM_144534|Tmem38a|74166|transmembrane protein 38A	AB261158|Tmem38a|74166|transmembrane protein 38A
mm9_v1_chr14_+_119254123_119254192	0.402549	NHLH1,2.p2	NM_001160099|Cldn10|58187|claudin 10	NM_021386|Cldn10|58187|claudin 10	BC029019|Cldn10|58187|claudin 10
mm9_v1_chr7_+_28390872_28390878	0.401949	NHLH1,2.p2	BC026151|Akt2|11652|thymoma viral proto-oncogene 2	NM_007434|Akt2|11652|thymoma viral proto-oncogene 2
mm9_v1_chr2_+_19579607_19579745	0.40186	NHLH1,2.p2	NM_027715|Otud1|71198|OTU domain containing 1
mm9_v1_chr7_-_30066642_30066696	0.401671	NHLH1,2.p2	AK007792|Spint2|20733|serine protease inhibitor, Kunitz type 2
mm9_v1_chr17_-_26005680_26005704	0.401379	NHLH1,2.p2	AK020614|Fam195a|68241|family with sequence similarity 195, member A	AK003564|Fam195a|68241|family with sequence similarity 195, member A	NM_026633|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr12_-_77470450_77470546	0.401207	NHLH1,2.p2	NM_001172104|Zbtb25|109929|zinc finger and BTB domain containing 25	AK137486|Zbtb25|109929|zinc finger and BTB domain containing 25	NM_028356|Zbtb25|109929|zinc finger and BTB domain containing 25
mm9_v1_chr5_+_117570113_117570195	0.400542	NHLH1,2.p2	AK040531|Taok3|330177|TAO kinase 3	BC158072|Taok3|330177|TAO kinase 3
mm9_v1_chr2_+_127951773_127951787	0.400436	NHLH1,2.p2	AK031285|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK037885|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK150464|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK152472|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK153542|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK162975|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_009754|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_207680|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	NM_207681|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK082613|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	BC019556|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK011490|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)	AK050192|Bcl2l11|12125|BCL2-like 11 (apoptosis facilitator)
mm9_v1_chr15_-_75921924_75921982	0.399523	NHLH1,2.p2	BC068117|Nrbp2|223649|nuclear receptor binding protein 2
mm9_v1_chr10_+_13685579_13685611	0.398942	NHLH1,2.p2	AK013816|2900084C01Rik|73081|RIKEN cDNA 2900084C01 gene
mm9_v1_chr1_-_33871261_33871282	0.398199	NHLH1,2.p2	AK122541|Zfp451|98403|zinc finger protein 451	BC019546|Zfp451|98403|zinc finger protein 451	AK030088|Zfp451|98403|zinc finger protein 451	NM_133817|Zfp451|98403|zinc finger protein 451
mm9_v1_chr3_-_40886864_40886875	0.397655	NHLH1,2.p2	AK014543|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr17_+_46247928_46248012	0.396914	NHLH1,2.p2	AB049953|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK003444|Mrps18a|68565|mitochondrial ribosomal protein S18A	NM_026768|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK028226|Mrps18a|68565|mitochondrial ribosomal protein S18A	AK172171|Mrps18a|68565|mitochondrial ribosomal protein S18A	BC058959|Mrps18a|68565|mitochondrial ribosomal protein S18A
mm9_v1_chr5_-_109058762_109058763	0.395751	NHLH1,2.p2	BC065109|Gak|231580|cyclin G associated kinase
mm9_v1_chr5_-_104450785_104450834	0.395149	NHLH1,2.p2	AF304306|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	BC038340|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	NM_053262|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	AK154803|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	AK155174|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	AK158327|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	AK170939|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	AY053570|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	AK155202|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11	AK155327|Hsd17b11|114664|hydroxysteroid (17-beta) dehydrogenase 11
mm9_v1_chr1_-_52784161_52784228	0.395057	NHLH1,2.p2	AK035995|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_133829|Mfsd6|98682|major facilitator superfamily domain containing 6	NM_178081|Mfsd6|98682|major facilitator superfamily domain containing 6	AK171946|Mfsd6|98682|major facilitator superfamily domain containing 6
mm9_v1_chr5_-_137043082_137043316	0.393968	NHLH1,2.p2	BC054370|Cux1|13047|cut-like homeobox 1	AK220173|Cux1|13047|cut-like homeobox 1	BC014289|Cux1|13047|cut-like homeobox 1	AK133543|Cux1|13047|cut-like homeobox 1	AK098096|Cux1|13047|cut-like homeobox 1	BC090847|Cux1|13047|cut-like homeobox 1	U68542|Cux1|13047|cut-like homeobox 1	NM_198602|Cux1|13047|cut-like homeobox 1	NM_009986|Cux1|13047|cut-like homeobox 1
mm9_v1_chr9_-_103664100_103664222	0.392847	NHLH1,2.p2	BC052085|Tmem108|81907|transmembrane protein 108	AK077586|Tmem108|81907|transmembrane protein 108	AK044989|Tmem108|81907|transmembrane protein 108	AK047474|Tmem108|81907|transmembrane protein 108	AK086266|Tmem108|81907|transmembrane protein 108	AK141589|Tmem108|81907|transmembrane protein 108	AK052330|Tmem108|81907|transmembrane protein 108	NM_178638|Tmem108|81907|transmembrane protein 108
mm9_v1_chr10_-_83996516_83996534	0.392428	NHLH1,2.p2	AK030708|Ckap4|216197|cytoskeleton-associated protein 4
mm9_v1_chr11_-_29147217_29147312	0.392126	NHLH1,2.p2	BC005731|Ccdc104|216618|coiled-coil domain containing 104	AK075858|Ccdc104|216618|coiled-coil domain containing 104	NM_025740|Ccdc104|216618|coiled-coil domain containing 104	AK010468|Ccdc104|216618|coiled-coil domain containing 104	AK016479|Ccdc104|216618|coiled-coil domain containing 104
mm9_v1_chr15_+_54943978_54944054	0.391669	NHLH1,2.p2	AK145208|Deptor|97998|DEP domain containing MTOR-interacting protein	AK220300|Deptor|97998|DEP domain containing MTOR-interacting protein	NM_145470|Deptor|97998|DEP domain containing MTOR-interacting protein
mm9_v1_chr2_-_155644921_155645017	0.391347	NHLH1,2.p2	AK157030|BC029722|613262|cDNA sequence BC029722	AK158030|BC029722|613262|cDNA sequence BC029722	BC029722|BC029722|613262|cDNA sequence BC029722	AK159419|BC029722|613262|cDNA sequence BC029722
mm9_v1_chr14_-_70842971_70843070	0.39087	NHLH1,2.p2	NM_001164082|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr3_-_53461276_53461276	0.390223	NHLH1,2.p2	AB236662|Frem2|242022|Fras1 related extracellular matrix protein 2	NM_172862|Frem2|242022|Fras1 related extracellular matrix protein 2
mm9_v1_chr19_-_7062118_7062180	0.390091	NHLH1,2.p2	BC046303|Vegfb|22340|vascular endothelial growth factor B	AK148188|Vegfb|22340|vascular endothelial growth factor B	NM_001185164|Vegfb|22340|vascular endothelial growth factor B	NM_011697|Vegfb|22340|vascular endothelial growth factor B
mm9_v1_chr8_+_13287887_13288012	0.389397	NHLH1,2.p2	NM_172282|Tmco3|234076|transmembrane and coiled-coil domains 3
mm9_v1_chr16_-_90934985_90935126	0.389252	NHLH1,2.p2	AK003413|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	BC019533|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK018510|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	AK045905|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene	NM_026502|1110004E09Rik|68001|RIKEN cDNA 1110004E09 gene
mm9_v1_chr6_+_108610606_108610702	0.389248	NHLH1,2.p2	AK048242|Bhlhe40|20893|basic helix-loop-helix family, member e40	NM_011498|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK154935|Bhlhe40|20893|basic helix-loop-helix family, member e40	AK090032|Bhlhe40|20893|basic helix-loop-helix family, member e40	BC010720|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF010305|Bhlhe40|20893|basic helix-loop-helix family, member e40	AF364051|Bhlhe40|20893|basic helix-loop-helix family, member e40
mm9_v1_chr12_+_45370145_45370261	0.388716	NHLH1,2.p2	AK004621|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK163211|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK029616|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK168475|Pnpla8|67452|patatin-like phospholipase domain containing 8	AK145776|Pnpla8|67452|patatin-like phospholipase domain containing 8	AB044139|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr17_-_71339826_71339901	0.388511	NHLH1,2.p2	BC099425|Myl12b|67938|myosin, light chain 12B, regulatory	BC131925|Myl12b|67938|myosin, light chain 12B, regulatory	BC131927|Myl12b|67938|myosin, light chain 12B, regulatory	BC028878|Myl12b|67938|myosin, light chain 12B, regulatory	AK002885|Myl12b|67938|myosin, light chain 12B, regulatory	AK168316|Myl12b|67938|myosin, light chain 12B, regulatory	NM_023402|Myl12b|67938|myosin, light chain 12B, regulatory	AK146115|Myl12b|67938|myosin, light chain 12B, regulatory	AK005133|Myl12b|67938|myosin, light chain 12B, regulatory	AK160123|Myl12b|67938|myosin, light chain 12B, regulatory
mm9_v1_chr15_+_78707972_78708024	0.388401	NHLH1,2.p2	BC054422|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK170437|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK155195|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK080881|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1	AK159771|Gga1|106039|golgi associated, gamma adaptin ear containing, ARF binding protein 1
mm9_v1_chr3_-_142058569_142058593	0.388373	NHLH1,2.p2	AK009464|Pdlim5|56376|PDZ and LIM domain 5	AB016586|Pdlim5|56376|PDZ and LIM domain 5	AB016588|Pdlim5|56376|PDZ and LIM domain 5
mm9_v1_chr5_+_29895965_29896034	0.388001	NHLH1,2.p2	BC059245|Ube3c|100763|ubiquitin protein ligase E3C	AK029973|Ube3c|100763|ubiquitin protein ligase E3C	AK045211|Ube3c|100763|ubiquitin protein ligase E3C	AK140491|Ube3c|100763|ubiquitin protein ligase E3C	BC120731|Ube3c|100763|ubiquitin protein ligase E3C	BC137626|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr13_+_81850415_81850532	0.387832	NHLH1,2.p2	AK046032|Mblac2|72852|metallo-beta-lactamase domain containing 2	NM_028372|Mblac2|72852|metallo-beta-lactamase domain containing 2	AK013594|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107207|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC114401|Mblac2|72852|metallo-beta-lactamase domain containing 2	BC107206|Mblac2|72852|metallo-beta-lactamase domain containing 2
mm9_v1_chrX_+_91881407_91881417	0.387043	NHLH1,2.p2	NM_008179|Gspt2|14853|G1 to S phase transition 2	AK050859|Gspt2|14853|G1 to S phase transition 2	AK019241|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr5_-_111239115_111239150	0.386819	NHLH1,2.p2	AK154939|Ulk1|22241|Unc-51 like kinase 1 (C. elegans)
mm9_v1_chr11_+_55283145_55283199	0.38681	NHLH1,2.p2	AK141689|G3bp1|27041|Ras-GTPase-activating protein SH3-domain binding protein 1	AK220230|G3bp1|27041|Ras-GTPase-activating protein SH3-domain binding protein 1
mm9_v1_chr6_-_82889660_82889681	0.38647	NHLH1,2.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr7_+_53040723_53040749	0.386279	NHLH1,2.p2	BC083185|Lmtk3|381983|lemur tyrosine kinase 3
mm9_v1_chrX_-_99839480_99839617	0.386242	NHLH1,2.p2	X74616|Phka1|18679|phosphorylase kinase alpha 1	AK137497|Phka1|18679|phosphorylase kinase alpha 1	AK036440|Phka1|18679|phosphorylase kinase alpha 1	AK030426|Phka1|18679|phosphorylase kinase alpha 1	NM_008832|Phka1|18679|phosphorylase kinase alpha 1	NM_173021|Phka1|18679|phosphorylase kinase alpha 1
mm9_v1_chr6_+_91162792_91162863	0.386162	NHLH1,2.p2	AK161522|Fbln2|14115|fibulin 2	AK017870|Fbln2|14115|fibulin 2	AK168688|Fbln2|14115|fibulin 2	X75285|Fbln2|14115|fibulin 2
mm9_v1_chr8_+_86496844_86496952	0.384602	NHLH1,2.p2	NM_008854|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	BC003238|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	BC054834|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha	M12303|Prkaca|18747|protein kinase, cAMP dependent, catalytic, alpha
mm9_v1_chr19_-_45734544_45734682	0.384454	NHLH1,2.p2	BC027031|Fbxw4|30838|F-box and WD-40 domain protein 4	AF176519|Fbxw4|30838|F-box and WD-40 domain protein 4	AB022163|Fbxw4|30838|F-box and WD-40 domain protein 4	NM_013907|Fbxw4|30838|F-box and WD-40 domain protein 4
mm9_v1_chr5_+_65498773_65498819	0.384233	NHLH1,2.p2	AK220195|Klhl5|71778|kelch-like 5 (Drosophila)	AK004982|Klhl5|71778|kelch-like 5 (Drosophila)
mm9_v1_chr3_+_62142923_62142923	0.384194	NHLH1,2.p2	AK087060|Arhgef26|622434|Rho guanine nucleotide exchange factor (GEF) 26
mm9_v1_chr11_+_29592946_29593072	0.383278	NHLH1,2.p2	AK220511|Rtn4|68585|reticulon 4	AY102281|Rtn4|68585|reticulon 4	AY102282|Rtn4|68585|reticulon 4	AY102284|Rtn4|68585|reticulon 4	AY114152|Rtn4|68585|reticulon 4	AY114153|Rtn4|68585|reticulon 4	AK034902|Rtn4|68585|reticulon 4	BC056373|Rtn4|68585|reticulon 4
mm9_v1_chr2_+_79475581_79475821	0.382908	NHLH1,2.p2	AK169543|Ssfa2|70599|sperm specific antigen 2	NM_080558|Ssfa2|70599|sperm specific antigen 2	AB120565|Ssfa2|70599|sperm specific antigen 2	BC141883|Ssfa2|70599|sperm specific antigen 2	BC115799|Ssfa2|70599|sperm specific antigen 2	BC122519|Ssfa2|70599|sperm specific antigen 2	AB093303|Ssfa2|70599|sperm specific antigen 2
mm9_v1_chr19_-_57389371_57389408	0.382621	NHLH1,2.p2	AK171860|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr4_+_3605207_3605435	0.381852	NHLH1,2.p2	AK172492|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	NM_001111096|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	NM_010747|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	AK151914|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	AK152199|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	AK170561|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	AK153038|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	AK028112|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	M64608|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	BC031547|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	BC003253|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	M57696|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	M57697|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog	BC157998|Lyn|17096|Yamaguchi sarcoma viral (v-yes-1) oncogene homolog
mm9_v1_chr2_+_118727248_118727453	0.381467	NHLH1,2.p2	NM_001045523|Bahd1|228536|bromo adjacent homology domain containing 1	AK152597|Bahd1|228536|bromo adjacent homology domain containing 1
mm9_v1_chr3_-_37623250_37623411	0.381381	NHLH1,2.p2	AK039231|Gm5148|381438|predicted gene 5148	AK039519|Gm5148|381438|predicted gene 5148	AK039710|Gm5148|381438|predicted gene 5148	NM_198657|Gm5148|381438|predicted gene 5148	AK045832|Gm5148|381438|predicted gene 5148
mm9_v1_chr2_-_180377395_180377395	0.38138	NHLH1,2.p2	BC108399|Tcfl5|277353|transcription factor-like 5 (basic helix-loop-helix)	NM_178254|Tcfl5|277353|transcription factor-like 5 (basic helix-loop-helix)
mm9_v1_chr11_-_116714173_116714405	0.381033	NHLH1,2.p2	AK204489|Srsf2|20382|serine/arginine-rich splicing factor 2	L13610|Srsf2|20382|serine/arginine-rich splicing factor 2	BC005493|Srsf2|20382|serine/arginine-rich splicing factor 2	AF077858|Srsf2|20382|serine/arginine-rich splicing factor 2	U14648|Srsf2|20382|serine/arginine-rich splicing factor 2	AK161873|Srsf2|20382|serine/arginine-rich splicing factor 2	AK011528|Srsf2|20382|serine/arginine-rich splicing factor 2	AK076448|Srsf2|20382|serine/arginine-rich splicing factor 2	AK086103|Srsf2|20382|serine/arginine-rich splicing factor 2	AK088042|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr7_-_52071930_52072029	0.380682	NHLH1,2.p2	AF312938|Atf5|107503|activating transcription factor 5	AF375475|Atf5|107503|activating transcription factor 5	BC092068|Atf5|107503|activating transcription factor 5	AF310624|Atf5|107503|activating transcription factor 5	AK131939|Atf5|107503|activating transcription factor 5	AK146479|Atf5|107503|activating transcription factor 5	AK159624|Atf5|107503|activating transcription factor 5
mm9_v1_chr10_+_80720191_80720236	0.378964	NHLH1,2.p2	AK018182|Matk|17179|megakaryocyte-associated tyrosine kinase	AK013606|Matk|17179|megakaryocyte-associated tyrosine kinase	S77473|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr8_+_3515373_3515441	0.378937	NHLH1,2.p2	AF173829|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_001122818|Pnpla6|50767|patatin-like phospholipase domain containing 6	NM_015801|Pnpla6|50767|patatin-like phospholipase domain containing 6	AK040720|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC054789|Pnpla6|50767|patatin-like phospholipase domain containing 6	BC056999|Pnpla6|50767|patatin-like phospholipase domain containing 6
mm9_v1_chr4_+_139178802_139178820	0.378199	NHLH1,2.p2	BC060650|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1	NM_175438|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr5_+_123465011_123465126	0.377846	NHLH1,2.p2	AK052573|Orai1|109305|ORAI calcium release-activated calcium modulator 1	NM_175423|Orai1|109305|ORAI calcium release-activated calcium modulator 1
mm9_v1_chr3_+_33699111_33699116	0.377778	NHLH1,2.p2	AK031605|Ttc14|67120|tetratricopeptide repeat domain 14	AK134539|Ttc14|67120|tetratricopeptide repeat domain 14	NM_025978|Ttc14|67120|tetratricopeptide repeat domain 14	NM_027619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr19_-_24936141_24936299	0.377685	NHLH1,2.p2	BC115937|Pgm5|226041|phosphoglucomutase 5	AK076484|Pgm5|226041|phosphoglucomutase 5
mm9_v1_chr4_+_119406425_119406450	0.376577	NHLH1,2.p2	BC024097|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3	BC049859|Hivep3|16656|human immunodeficiency virus type I enhancer binding protein 3
mm9_v1_chr11_+_77276081_77276139	0.376193	NHLH1,2.p2	AK158179|Coro6|216961|coronin 6
mm9_v1_chr5_+_54389740_54389855	0.375711	NHLH1,2.p2	AK173183|Stim2|116873|stromal interaction molecule 2	NM_001081103|Stim2|116873|stromal interaction molecule 2	AK080310|Stim2|116873|stromal interaction molecule 2	BC137881|Stim2|116873|stromal interaction molecule 2	BC145001|Stim2|116873|stromal interaction molecule 2
mm9_v1_chr1_-_64167818_64167853	0.375666	NHLH1,2.p2	AF327568|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr17_+_8503966_8504073	0.37556	NHLH1,2.p2	BC091770|Sft2d1|106489|SFT2 domain containing 1	NM_134114|Sft2d1|106489|SFT2 domain containing 1	BC006777|Sft2d1|106489|SFT2 domain containing 1	AK171776|Sft2d1|106489|SFT2 domain containing 1	AK151338|Sft2d1|106489|SFT2 domain containing 1	BC130232|Sft2d1|106489|SFT2 domain containing 1	AK017471|Sft2d1|106489|SFT2 domain containing 1
mm9_v1_chr8_-_125135240_125135386	0.375062	NHLH1,2.p2	BC004002|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK220245|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK033946|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AF111346|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	AK159592|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	NM_001193645|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase	NM_016722|Galns|50917|galactosamine (N-acetyl)-6-sulfate sulfatase
mm9_v1_chr19_+_5912952_5912986	0.374363	NHLH1,2.p2	
mm9_v1_chr4_+_138936531_138936597	0.373995	NHLH1,2.p2	NM_001160319|Ubr4|69116|ubiquitin protein ligase E3 component n-recognin 4	AK086097|Ubr4|69116|ubiquitin protein ligase E3 component n-recognin 4
mm9_v1_chr12_+_35731853_35731876	0.373411	NHLH1,2.p2	AK154425|Snx13|217463|sorting nexin 13	NM_001014973|Snx13|217463|sorting nexin 13	AK166180|Snx13|217463|sorting nexin 13	BC067201|Snx13|217463|sorting nexin 13
mm9_v1_chr2_-_79269110_79269144	0.373114	NHLH1,2.p2	BC046474|Cerkl|228094|ceramide kinase-like	NM_001048176|Cerkl|228094|ceramide kinase-like
mm9_v1_chr5_-_122951791_122951906	0.373016	NHLH1,2.p2	BC054531|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	BC054748|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AJ131821|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	AJ223584|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr2_-_5635394_5635451	0.372998	NHLH1,2.p2	AK154434|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr15_+_74346853_74346867	0.372759	NHLH1,2.p2	AK147600|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr1_+_94807324_94807438	0.372543	NHLH1,2.p2	AK154881|Rnpepl1|108657|arginyl aminopeptidase (aminopeptidase B)-like 1	AK133751|Rnpepl1|108657|arginyl aminopeptidase (aminopeptidase B)-like 1
mm9_v1_chr7_-_28231535_28231646	0.372066	NHLH1,2.p2	AK006254|Spnb4|80297|spectrin beta 4	AB055618|Spnb4|80297|spectrin beta 4	NM_032610|Spnb4|80297|spectrin beta 4	AK147558|Spnb4|80297|spectrin beta 4
mm9_v1_chr8_+_108129115_108129214	0.371959	NHLH1,2.p2	NM_001081241|Fam65a|75687|family with sequence similarity 65, member A	AK122573|Fam65a|75687|family with sequence similarity 65, member A	AK052316|Fam65a|75687|family with sequence similarity 65, member A	BC079880|Fam65a|75687|family with sequence similarity 65, member A
mm9_v1_chr14_-_21365595_21365800	0.371791	NHLH1,2.p2	BC037668|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AK135203|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	M81483|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	AB221678|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	BC066000|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform	NM_008914|Ppp3cb|19056|protein phosphatase 3, catalytic subunit, beta isoform
mm9_v1_chr8_+_125589411_125589473	0.37068	NHLH1,2.p2	BC051051|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr5_-_124171015_124171067	0.370558	NHLH1,2.p2	AK156770|Zcchc8|70650|zinc finger, CCHC domain containing 8	AK032349|Zcchc8|70650|zinc finger, CCHC domain containing 8	NM_027494|Zcchc8|70650|zinc finger, CCHC domain containing 8
mm9_v1_chr15_+_78258993_78259251	0.369881	NHLH1,2.p2	BC144818|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC144820|Kctd17|72844|potassium channel tetramerisation domain containing 17	BC145799|Kctd17|72844|potassium channel tetramerisation domain containing 17	NM_001081367|Kctd17|72844|potassium channel tetramerisation domain containing 17
mm9_v1_chr18_+_58038278_58038331	0.369837	NHLH1,2.p2	NM_009194|Slc12a2|20496|solute carrier family 12, member 2	U13174|Slc12a2|20496|solute carrier family 12, member 2
mm9_v1_chr11_-_116060118_116060156	0.369422	NHLH1,2.p2	AK054446|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl
mm9_v1_chr5_-_108298126_108298186	0.368653	NHLH1,2.p2	AK134294|Evi5|14020|ecotropic viral integration site 5	AK162905|Evi5|14020|ecotropic viral integration site 5
mm9_v1_chr3_-_51364525_51364799	0.368599	NHLH1,2.p2	AF448509|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK129428|Setd7|73251|SET domain containing (lysine methyltransferase) 7	BC050190|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147413|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK048924|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK170161|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147422|Setd7|73251|SET domain containing (lysine methyltransferase) 7	NM_080793|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147667|Setd7|73251|SET domain containing (lysine methyltransferase) 7	AK147316|Setd7|73251|SET domain containing (lysine methyltransferase) 7
mm9_v1_chr12_+_81891479_81891592	0.368553	NHLH1,2.p2	AK030233|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK161132|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK143867|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	BC040401|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	NM_178682|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK151939|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK152820|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene	AK164823|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr11_-_61668486_61668601	0.367978	NHLH1,2.p2	AF145922|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC046778|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	BC053029|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146620|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK122331|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK146893|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	AK148142|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)	NM_013881|Ulk2|29869|Unc-51 like kinase 2 (C. elegans)
mm9_v1_chr1_-_59293936_59294089	0.367873	NHLH1,2.p2	AK029858|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_001159948|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC046828|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	BC031479|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	AB053307|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_028717|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)	NM_146109|Als2|74018|amyotrophic lateral sclerosis 2 (juvenile) homolog (human)
mm9_v1_chr5_+_105844787_105844867	0.367634	NHLH1,2.p2	AK083378|Lrrc8b|433926|leucine rich repeat containing 8 family, member B	NM_001033550|Lrrc8b|433926|leucine rich repeat containing 8 family, member B
mm9_v1_chr11_-_45979836_45979862	0.3672	NHLH1,2.p2	AK035736|Nipal4|214112|NIPA-like domain containing 4	BC139819|Nipal4|214112|NIPA-like domain containing 4	AK035561|Nipal4|214112|NIPA-like domain containing 4	NM_172524|Nipal4|214112|NIPA-like domain containing 4
mm9_v1_chr15_-_91403581_91403640	0.366574	NHLH1,2.p2	BC119586|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	BC119587|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	AK041673|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13
mm9_v1_chr4_-_33335457_33335484	0.365581	NHLH1,2.p2	AK159693|Pnrc1|108767|proline-rich nuclear receptor coactivator 1	AK087995|Pnrc1|108767|proline-rich nuclear receptor coactivator 1	AK160284|Pnrc1|108767|proline-rich nuclear receptor coactivator 1
mm9_v1_chr17_+_24686778_24686992	0.365305	NHLH1,2.p2	BC099589|Pkd1|18763|polycystic kidney disease 1 homolog	NM_013630|Pkd1|18763|polycystic kidney disease 1 homolog	U70209|Pkd1|18763|polycystic kidney disease 1 homolog
mm9_v1_chr3_+_89195758_89195785	0.365265	NHLH1,2.p2	
mm9_v1_chr15_-_75397243_75397344	0.36524	NHLH1,2.p2	AF127091|Ly6h|23934|lymphocyte antigen 6 complex, locus H	BC028758|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135688|Ly6h|23934|lymphocyte antigen 6 complex, locus H	AK021002|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr5_-_123183255_123183351	0.3648	NHLH1,2.p2	AK050846|Camkk2|207565|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm9_v1_chr5_+_30062502_30062604	0.364733	NHLH1,2.p2	AK144182|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK133805|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK152626|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK032039|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK151219|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK169332|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK005680|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AB028854|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AF035962|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	BC083349|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	BC003702|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK153091|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK151752|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK152632|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK169767|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6	AK208008|Dnajb6|23950|DnaJ (Hsp40) homolog, subfamily B, member 6
mm9_v1_chr15_+_33012972_33013051	0.364682	NHLH1,2.p2	AF009513|Pgcp|54381|plasma glutamate carboxypeptidase	AK152145|Pgcp|54381|plasma glutamate carboxypeptidase	AK152139|Pgcp|54381|plasma glutamate carboxypeptidase	AK054422|Pgcp|54381|plasma glutamate carboxypeptidase	AK137164|Pgcp|54381|plasma glutamate carboxypeptidase	AK154361|Pgcp|54381|plasma glutamate carboxypeptidase	AK032972|Pgcp|54381|plasma glutamate carboxypeptidase	BC037067|Pgcp|54381|plasma glutamate carboxypeptidase
mm9_v1_chr4_-_134323845_134323948	0.364428	NHLH1,2.p2	BC021467|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK159800|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC066808|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	BC067411|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK167290|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK029008|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	AK148340|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1	NM_145554|Ldlrap1|100017|low density lipoprotein receptor adaptor protein 1
mm9_v1_chr17_+_27693821_27693843	0.363493	NHLH1,2.p2	J04179|Hmga1|15361|high mobility group AT-hook 1
mm9_v1_chr6_-_97437749_97437990	0.363459	NHLH1,2.p2	AK143978|Frmd4b|232288|FERM domain containing 4B	AF327856|Frmd4b|232288|FERM domain containing 4B
mm9_v1_chr1_+_91351435_91351522	0.363398	NHLH1,2.p2	BC096588|Agap1|347722|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm9_v1_chr9_+_111214242_111214242	0.363311	NHLH1,2.p2	AK079552|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1	NM_001164659|Trank1|320429|tetratricopeptide repeat and ankyrin repeat containing 1
mm9_v1_chr6_-_39369941_39369948	0.363209	NHLH1,2.p2	AK005137|Mkrn1|54484|makorin, ring finger protein, 1
mm9_v1_chr10_-_101953046_101953066	0.362963	NHLH1,2.p2	AF304160|Nts|67405|neurotensin	BC043024|Nts|67405|neurotensin	NM_024435|Nts|67405|neurotensin	AK017202|Nts|67405|neurotensin	AK017212|Nts|67405|neurotensin
mm9_v1_chr17_-_26078825_26078928	0.362813	NHLH1,2.p2	AK155173|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK016852|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK137390|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK033349|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK170431|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AB008895|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	BC014287|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	NM_011822|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK163680|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q	AK169284|Pigq|14755|phosphatidylinositol glycan anchor biosynthesis, class Q
mm9_v1_chr7_-_30836383_30836414	0.362651	NHLH1,2.p2	AK030632|Zfp14|243906|zinc finger protein 14	AK045631|Zfp14|243906|zinc finger protein 14	AK028663|Zfp14|243906|zinc finger protein 14	BC066057|Zfp14|243906|zinc finger protein 14	AK032214|Zfp14|243906|zinc finger protein 14	NM_011748|Zfp14|243906|zinc finger protein 14	NM_178733|Zfp14|243906|zinc finger protein 14
mm9_v1_chr2_+_35477568_35477592	0.362553	NHLH1,2.p2	AK147464|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein	AK164475|Dab2ip|69601|disabled homolog 2 (Drosophila) interacting protein
mm9_v1_chr16_-_85901362_85901374	0.361648	NHLH1,2.p2	NM_011782|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr5_-_23181737_23181807	0.361184	NHLH1,2.p2	AK014004|Srpk2|20817|serine/arginine-rich protein specific kinase 2	U92456|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr15_-_37721754_37721786	0.359426	NHLH1,2.p2	NM_001170866|Ncald|52589|neurocalcin delta
mm9_v1_chr1_+_55294077_55294090	0.359369	NHLH1,2.p2	AK042888|Mars2|212679|methionine-tRNA synthetase 2 (mitochondrial)	AK144628|Mars2|212679|methionine-tRNA synthetase 2 (mitochondrial)
mm9_v1_chr13_-_49063188_49063196	0.358557	NHLH1,2.p2	BC158134|Fam120a|218236|family with sequence similarity 120, member A	NM_001033268|Fam120a|218236|family with sequence similarity 120, member A
mm9_v1_chr12_+_81891598_81891755	0.358497	NHLH1,2.p2	AK129100|4933426M11Rik|217684|RIKEN cDNA 4933426M11 gene
mm9_v1_chr8_-_87323958_87324038	0.357954	NHLH1,2.p2	BC003766|Nfix|18032|nuclear factor I/X	Y07689|Nfix|18032|nuclear factor I/X
mm9_v1_chr8_-_67171692_67171792	0.357742	NHLH1,2.p2	U23184|Cpe|12876|carboxypeptidase E	X61232|Cpe|12876|carboxypeptidase E
mm9_v1_chr3_-_122687238_122687429	0.35745	NHLH1,2.p2	AK040332|Usp53|99526|ubiquitin specific peptidase 53	AK140453|Usp53|99526|ubiquitin specific peptidase 53	BC096383|Usp53|99526|ubiquitin specific peptidase 53	AK036876|Usp53|99526|ubiquitin specific peptidase 53	NM_133857|Usp53|99526|ubiquitin specific peptidase 53	AK030317|Usp53|99526|ubiquitin specific peptidase 53	AK045953|Usp53|99526|ubiquitin specific peptidase 53
mm9_v1_chr6_-_119798116_119798193	0.357194	NHLH1,2.p2	AK053824|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK035989|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AK048990|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340028|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	AF340029|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_053204|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1	NM_178085|Erc1|111173|ELKS/RAB6-interacting/CAST family member 1
mm9_v1_chr19_-_7054901_7054955	0.35717	NHLH1,2.p2	BC031824|Fkbp2|14227|FK506 binding protein 2	BC053692|Fkbp2|14227|FK506 binding protein 2	AK144284|Fkbp2|14227|FK506 binding protein 2	AK165394|Fkbp2|14227|FK506 binding protein 2	NM_008020|Fkbp2|14227|FK506 binding protein 2	NM_001166368|Fkbp2|14227|FK506 binding protein 2
mm9_v1_chr4_+_134024234_134024333	0.356633	NHLH1,2.p2	NM_019641|Stmn1|16765|stathmin 1	AB064953|Stmn1|16765|stathmin 1	AK002606|Stmn1|16765|stathmin 1	AK012231|Stmn1|16765|stathmin 1	AK012347|Stmn1|16765|stathmin 1	AK014108|Stmn1|16765|stathmin 1	AK088628|Stmn1|16765|stathmin 1	AK013302|Stmn1|16765|stathmin 1	BC010581|Stmn1|16765|stathmin 1	BC031831|Stmn1|16765|stathmin 1	BC054396|Stmn1|16765|stathmin 1
mm9_v1_chr7_-_134027930_134028177	0.356582	NHLH1,2.p2	BC077714|Taok2|381921|TAO kinase 2	BC075676|Taok2|381921|TAO kinase 2
mm9_v1_chr4_-_109337891_109337976	0.356501	NHLH1,2.p2	AK003933|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	BC027026|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	NM_007671|Cdkn2c|12580|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
mm9_v1_chr15_-_36426471_36426537	0.356188	NHLH1,2.p2	AK088304|Ankrd46|68839|ankyrin repeat domain 46	AK148049|Ankrd46|68839|ankyrin repeat domain 46	BC094595|Ankrd46|68839|ankyrin repeat domain 46	BC086659|Ankrd46|68839|ankyrin repeat domain 46
mm9_v1_chr15_-_89004279_89004426	0.355985	NHLH1,2.p2	BC158086|Plxnb2|140570|plexin B2	BC172162|Plxnb2|140570|plexin B2	NM_001159521|Plxnb2|140570|plexin B2
mm9_v1_chr17_+_24607348_24607427	0.355831	NHLH1,2.p2	BC083113|Pgp|67078|phosphoglycolate phosphatase	BC040100|Pgp|67078|phosphoglycolate phosphatase	NM_025954|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr9_+_21397379_21397470	0.355765	NHLH1,2.p2	AK088045|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK089121|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	BC025883|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene	AK034762|1810026J23Rik|69773|RIKEN cDNA 1810026J23 gene
mm9_v1_chr13_-_100785593_100785609	0.355181	NHLH1,2.p2	AK143233|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	NM_030026|Mccc2|78038|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm9_v1_chrX_+_93908779_93908943	0.354532	NHLH1,2.p2	AK018327|Gpr165|76206|G protein-coupled receptor 165	NM_029536|Gpr165|76206|G protein-coupled receptor 165	AK042723|Gpr165|76206|G protein-coupled receptor 165	AK045935|Gpr165|76206|G protein-coupled receptor 165	AK034479|Gpr165|76206|G protein-coupled receptor 165	BC113184|Gpr165|76206|G protein-coupled receptor 165	BC113791|Gpr165|76206|G protein-coupled receptor 165
mm9_v1_chr1_+_107887234_107887342	0.354412	NHLH1,2.p2	AK173248|Zcchc2|227449|zinc finger, CCHC domain containing 2
mm9_v1_chr2_-_91864276_91864398	0.353587	NHLH1,2.p2	AB017614|Creb3l1|26427|cAMP responsive element binding protein 3-like 1	BC016447|Creb3l1|26427|cAMP responsive element binding protein 3-like 1	AK142368|Creb3l1|26427|cAMP responsive element binding protein 3-like 1	NM_011957|Creb3l1|26427|cAMP responsive element binding protein 3-like 1
mm9_v1_chr1_-_66864031_66864049	0.353583	NHLH1,2.p2	BC141036|1110028C15Rik|68691|RIKEN cDNA 1110028C15 gene
mm9_v1_chr10_-_75261240_75261328	0.353519	NHLH1,2.p2	X98055|Gstt1|14871|glutathione S-transferase, theta 1	BC012254|Gstt1|14871|glutathione S-transferase, theta 1	BC055020|Gstt1|14871|glutathione S-transferase, theta 1	AK002338|Gstt1|14871|glutathione S-transferase, theta 1	NM_008185|Gstt1|14871|glutathione S-transferase, theta 1
mm9_v1_chr6_+_42300005_42300085	0.352213	NHLH1,2.p2	AK161709|Zyx|22793|zyxin	AK165290|Zyx|22793|zyxin	AK031415|Zyx|22793|zyxin	AK170571|Zyx|22793|zyxin	AK076491|Zyx|22793|zyxin	AK035743|Zyx|22793|zyxin	AK090110|Zyx|22793|zyxin	AK183092|Zyx|22793|zyxin
mm9_v1_chr7_-_147288290_147288306	0.352121	NHLH1,2.p2	BC028662|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK007494|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK042452|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK044731|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	AK079410|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene	NM_026928|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene
mm9_v1_chr19_-_18706181_18706214	0.351995	NHLH1,2.p2	BC060986|Ostf1|20409|osteoclast stimulating factor 1
mm9_v1_chr5_-_122952179_122952182	0.351505	NHLH1,2.p2	AK220538|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr5_+_125921888_125921947	0.350303	NHLH1,2.p2	NM_029752|Bri3bp|76809|Bri3 binding protein
mm9_v1_chr6_-_8728481_8728486	0.349638	NHLH1,2.p2	AK005965|Ica1|15893|islet cell autoantigen 1	NM_010492|Ica1|15893|islet cell autoantigen 1	AK016989|Ica1|15893|islet cell autoantigen 1
mm9_v1_chr1_-_175297624_175297771	0.349088	NHLH1,2.p2	AY059393|Cadm3|94332|cell adhesion molecule 3	BC115417|Cadm3|94332|cell adhesion molecule 3	BC115418|Cadm3|94332|cell adhesion molecule 3	BC079837|Cadm3|94332|cell adhesion molecule 3	AF195662|Cadm3|94332|cell adhesion molecule 3
mm9_v1_chr4_+_59818711_59818767	0.349071	NHLH1,2.p2	AK165619|Snx30|209131|sorting nexin family member 30	AK029012|Snx30|209131|sorting nexin family member 30	AK170999|Snx30|209131|sorting nexin family member 30	BC099674|Snx30|209131|sorting nexin family member 30	AK170774|Snx30|209131|sorting nexin family member 30
mm9_v1_chr16_+_38742365_38742408	0.347279	NHLH1,2.p2	AK050005|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	NM_019804|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK052013|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK053603|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK085368|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	BC031115|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AF142672|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AF158746|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK045602|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	AK018658|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	BC013492|B4galt4|56375|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4
mm9_v1_chr8_+_47556503_47556548	0.347102	NHLH1,2.p2	AK149406|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK152772|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK168078|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	AK004897|Acsl1|14081|acyl-CoA synthetase long-chain family member 1	BC056644|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr16_+_93683426_93683502	0.346126	NHLH1,2.p2	AK003232|Cbr3|109857|carbonyl reductase 3	BC028763|Cbr3|109857|carbonyl reductase 3	NM_173047|Cbr3|109857|carbonyl reductase 3	AK028150|Cbr3|109857|carbonyl reductase 3	BC096658|Cbr3|109857|carbonyl reductase 3	BC087735|Cbr3|109857|carbonyl reductase 3
mm9_v1_chr2_+_76244559_76244570	0.344523	NHLH1,2.p2	AK004353|Osbpl6|99031|oxysterol binding protein-like 6
mm9_v1_chr2_-_113839354_113839354	0.344233	NHLH1,2.p2	BC058595|Gjd2|14617|gap junction protein, delta 2	NM_010290|Gjd2|14617|gap junction protein, delta 2
mm9_v1_chr2_+_31325763_31325817	0.3437	NHLH1,2.p2	BC002074|Ass1|11898|argininosuccinate synthetase 1	NM_007494|Ass1|11898|argininosuccinate synthetase 1
mm9_v1_chr11_+_69652013_69652075	0.343563	NHLH1,2.p2	BC048542|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	BC117077|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	BC117079|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	NM_026982|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	AK007623|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene	AK014035|1810027O10Rik|69186|RIKEN cDNA 1810027O10 gene
mm9_v1_chr12_-_59369874_59369876	0.343316	NHLH1,2.p2	AK045596|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr18_-_61696105_61696313	0.341039	NHLH1,2.p2	AK017546|5730411F24Rik|70507|RIKEN cDNA 5730411F24 gene	NM_177828|Arhgef37|328967|Rho guanine nucleotide exchange factor (GEF) 37
mm9_v1_chr5_+_127722177_127722219	0.340834	NHLH1,2.p2	AK028289|Tmem132c|208213|transmembrane protein 132C	AK013435|Tmem132c|208213|transmembrane protein 132C	NM_175432|Tmem132c|208213|transmembrane protein 132C	AK028541|Tmem132c|208213|transmembrane protein 132C	AK157823|Tmem132c|208213|transmembrane protein 132C
mm9_v1_chrX_-_140367467_140367853	0.340176	NHLH1,2.p2	AY560329|Dcx|13193|doublecortin	AK048410|Dcx|13193|doublecortin	AF045547|Dcx|13193|doublecortin	AK164119|Dcx|13193|doublecortin	BC056391|Dcx|13193|doublecortin	AK049050|Dcx|13193|doublecortin	NM_001110222|Dcx|13193|doublecortin	BC057010|Dcx|13193|doublecortin	BC062974|Dcx|13193|doublecortin	AK014264|Dcx|13193|doublecortin	NM_001110223|Dcx|13193|doublecortin	NM_001110224|Dcx|13193|doublecortin	NM_010025|Dcx|13193|doublecortin	AB011678|Dcx|13193|doublecortin
mm9_v1_chr17_+_56301980_56301995	0.340107	NHLH1,2.p2	AK004949|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1	BC032199|Tnfaip8l1|66443|tumor necrosis factor, alpha-induced protein 8-like 1
mm9_v1_chr2_+_102390226_102390305	0.340095	NHLH1,2.p2	AK035434|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1	AK088017|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1	AK031254|Pamr1|210622|peptidase domain containing associated with muscle regeneration 1
mm9_v1_chr10_+_114822056_114822157	0.339416	NHLH1,2.p2	BC139124|Zfc3h1|216345|zinc finger, C3H1-type containing
mm9_v1_chr11_-_119959959_119959998	0.339187	NHLH1,2.p2	BC094318|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC049110|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene	BC064313|2410002I01Rik|78777|RIKEN cDNA 2410002I01 gene
mm9_v1_chr5_+_130555291_130555503	0.338424	NHLH1,2.p2	AK150753|Tpst1|22021|protein-tyrosine sulfotransferase 1	NM_001130476|Tpst1|22021|protein-tyrosine sulfotransferase 1	BC012666|Tpst1|22021|protein-tyrosine sulfotransferase 1
mm9_v1_chr5_-_90652986_90653036	0.338281	NHLH1,2.p2	AK156053|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC138972|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC145479|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC145486|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	BC145728|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_001033310|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)	NM_001163456|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr8_-_109580565_109580585	0.337927	NHLH1,2.p2	BC094654|Cog8|97484|component of oligomeric golgi complex 8	AK156186|Cog8|97484|component of oligomeric golgi complex 8	AK159569|Cog8|97484|component of oligomeric golgi complex 8	AK083734|Cog8|97484|component of oligomeric golgi complex 8	AK145727|Cog8|97484|component of oligomeric golgi complex 8	AK153617|Cog8|97484|component of oligomeric golgi complex 8	AK049957|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr4_+_59594516_59594564	0.337921	NHLH1,2.p2	AJ293845|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	AK144948|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	BC002211|Hsdl2|72479|hydroxysteroid dehydrogenase like 2
mm9_v1_chr11_+_59475986_59476013	0.3378	NHLH1,2.p2	AK154807|Mprip|26936|myosin phosphatase Rho interacting protein	NM_012027|Mprip|26936|myosin phosphatase Rho interacting protein	NM_201245|Mprip|26936|myosin phosphatase Rho interacting protein	AK158296|Mprip|26936|myosin phosphatase Rho interacting protein	AK171089|Mprip|26936|myosin phosphatase Rho interacting protein	AK170849|Mprip|26936|myosin phosphatase Rho interacting protein
mm9_v1_chr4_+_128331945_128331981	0.337409	NHLH1,2.p2	NM_001195130|Phc2|54383|polyhomeotic-like 2 (Drosophila)
mm9_v1_chr6_-_50211753_50211973	0.337306	NHLH1,2.p2	AK089459|Dfna5|54722|deafness, autosomal dominant 5 (human)	AK171278|Dfna5|54722|deafness, autosomal dominant 5 (human)	AF073309|Dfna5|54722|deafness, autosomal dominant 5 (human)	NM_018769|Dfna5|54722|deafness, autosomal dominant 5 (human)	BC051962|Dfna5|54722|deafness, autosomal dominant 5 (human)	BC086618|Dfna5|54722|deafness, autosomal dominant 5 (human)	AK041358|Dfna5|54722|deafness, autosomal dominant 5 (human)
mm9_v1_chr12_-_88225714_88225776	0.336714	NHLH1,2.p2	AK155373|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK171043|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK160059|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK140441|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK082791|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AF525300|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK084782|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK173282|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	NM_145836|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK032622|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene	AK032366|6430527G18Rik|238330|RIKEN cDNA 6430527G18 gene
mm9_v1_chr15_-_75397030_75397077	0.335085	NHLH1,2.p2	AK034884|Ly6h|23934|lymphocyte antigen 6 complex, locus H	NM_001135689|Ly6h|23934|lymphocyte antigen 6 complex, locus H
mm9_v1_chr1_-_39707702_39707818	0.334805	NHLH1,2.p2	BC034115|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK034501|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK043871|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK134713|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK046245|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK048589|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr15_+_74552040_74552053	0.334716	NHLH1,2.p2	AK019809|4930572J05Rik|223626|RIKEN cDNA 4930572J05 gene
mm9_v1_chr16_+_96502595_96502638	0.334128	NHLH1,2.p2	BC057887|B3galt5|93961|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	NM_033149|B3galt5|93961|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
mm9_v1_chr2_+_4897196_4897196	0.333859	NHLH1,2.p2	EF529510|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr17_-_47027336_47027357	0.333693	NHLH1,2.p2	AK039293|A330017A19Rik|442840|RIKEN cDNA A330017A19 gene
mm9_v1_chr2_-_80421054_80421454	0.332918	NHLH1,2.p2	AK195509|Nckap1|50884|NCK-associated protein 1	AK191629|Nckap1|50884|NCK-associated protein 1	AK194160|Nckap1|50884|NCK-associated protein 1	AK198467|Nckap1|50884|NCK-associated protein 1	AK204199|Nckap1|50884|NCK-associated protein 1	AK213144|Nckap1|50884|NCK-associated protein 1	BC127067|Nckap1|50884|NCK-associated protein 1	AJ534525|Nckap1|50884|NCK-associated protein 1	NM_016965|Nckap1|50884|NCK-associated protein 1	BC060197|Nckap1|50884|NCK-associated protein 1
mm9_v1_chr5_+_18732863_18732863	0.332359	NHLH1,2.p2	NM_001170746|Magi2|50791|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm9_v1_chrX_-_101017286_101017329	0.332265	NHLH1,2.p2	AF045692|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2	NM_009197|Slc16a2|20502|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm9_v1_chr12_-_93087514_93087619	0.33216	NHLH1,2.p2	AF063095|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160936|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	BC026816|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005023|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK146022|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK161546|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK160420|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK005544|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	AK220502|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_001039089|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)	NM_011344|Sel1l|20338|sel-1 suppressor of lin-12-like (C. elegans)
mm9_v1_chr1_-_33871218_33871259	0.331774	NHLH1,2.p2	BC062154|Zfp451|98403|zinc finger protein 451
mm9_v1_chr3_-_144382959_144383365	0.331697	NHLH1,2.p2	AK029647|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK158415|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK011371|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK004590|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	BC024362|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK172959|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AK146246|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF263364|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	AF272946|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	DQ205686|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)	NM_019464|Sh3glb1|54673|SH3-domain GRB2-like B1 (endophilin)
mm9_v1_chr9_+_57437238_57437346	0.331558	NHLH1,2.p2	NM_027895|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	BC037093|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	AK004783|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	BC151153|Ulk3|71742|unc-51-like kinase 3 (C. elegans)	AK154642|Ulk3|71742|unc-51-like kinase 3 (C. elegans)
mm9_v1_chr19_+_6418737_6418752	0.331349	NHLH1,2.p2	AK162611|Nrxn2|18190|neurexin II
mm9_v1_chr15_+_74346835_74346839	0.330573	NHLH1,2.p2	AK147494|Bai1|107831|brain-specific angiogenesis inhibitor 1
mm9_v1_chr3_+_89049813_89049887	0.328732	NHLH1,2.p2	BC043030|Krtcap2|66059|keratinocyte associated protein 2
mm9_v1_chr7_+_13610047_13610075	0.328646	NHLH1,2.p2	BC058391|Trim28|21849|tripartite motif-containing 28	BC020452|Trim28|21849|tripartite motif-containing 28
mm9_v1_chr8_+_93837422_93837472	0.328455	NHLH1,2.p2	NM_011936|Fto|26383|fat mass and obesity associated	AK049502|Fto|26383|fat mass and obesity associated	AK036677|Fto|26383|fat mass and obesity associated	AJ237917|Fto|26383|fat mass and obesity associated	AK088881|Fto|26383|fat mass and obesity associated	AK040866|Fto|26383|fat mass and obesity associated	AK045465|Fto|26383|fat mass and obesity associated	AK129437|Fto|26383|fat mass and obesity associated	BC057008|Fto|26383|fat mass and obesity associated	AK161060|Fto|26383|fat mass and obesity associated	AK046935|Fto|26383|fat mass and obesity associated	BC022222|Fto|26383|fat mass and obesity associated
mm9_v1_chr12_-_81537261_81537482	0.32732	NHLH1,2.p2	BC042567|Dcaf5|320808|DDB1 and CUL4 associated factor 5	AK122561|Dcaf5|320808|DDB1 and CUL4 associated factor 5
mm9_v1_chr2_-_153458515_153458541	0.327142	NHLH1,2.p2	NM_001195390|Commd7|99311|COMM domain containing 7	NM_133850|Commd7|99311|COMM domain containing 7
mm9_v1_chr3_+_144233654_144233696	0.327034	NHLH1,2.p2	AK159085|Sep15|93684|selenoprotein	BC019792|Sep15|93684|selenoprotein	AK020419|Sep15|93684|selenoprotein	AK159353|Sep15|93684|selenoprotein
mm9_v1_chr11_-_71949222_71949327	0.326944	NHLH1,2.p2	AK147630|Pitpnm3|327958|PITPNM family member 3	AK039594|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr11_+_120575231_120575329	0.325899	NHLH1,2.p2	AK081566|Lrrc45|217366|leucine rich repeat containing 45	AK153361|Lrrc45|217366|leucine rich repeat containing 45	NM_153545|Lrrc45|217366|leucine rich repeat containing 45	BC023296|Lrrc45|217366|leucine rich repeat containing 45
mm9_v1_chr11_+_68781623_68781690	0.325723	NHLH1,2.p2	AK171131|Slc25a35|71998|solute carrier family 25, member 35	AK007453|Slc25a35|71998|solute carrier family 25, member 35	NM_028048|Slc25a35|71998|solute carrier family 25, member 35	AK157873|Slc25a35|71998|solute carrier family 25, member 35	AK035739|Slc25a35|71998|solute carrier family 25, member 35	BC019996|Slc25a35|71998|solute carrier family 25, member 35
mm9_v1_chr16_+_16983690_16983704	0.32365	NHLH1,2.p2	X58712|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr5_-_136386767_136386839	0.322237	NHLH1,2.p2	AK192492|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr11_-_116060358_116060358	0.32214	NHLH1,2.p2	BC056448|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl	NM_015729|Acox1|11430|acyl-Coenzyme A oxidase 1, palmitoyl
mm9_v1_chr5_-_144288672_144288705	0.321885	NHLH1,2.p2	AK199407|Rac1|19353|RAS-related C3 botulinum substrate 1
mm9_v1_chr2_+_38787499_38787571	0.321451	NHLH1,2.p2	AK035313|Olfml2a|241327|olfactomedin-like 2A	NM_172854|Olfml2a|241327|olfactomedin-like 2A	BC137871|Olfml2a|241327|olfactomedin-like 2A
mm9_v1_chr1_-_181448015_181448143	0.321339	NHLH1,2.p2	BC038482|Smyd3|69726|SET and MYND domain containing 3	BC061485|Smyd3|69726|SET and MYND domain containing 3	BC052431|Smyd3|69726|SET and MYND domain containing 3	NM_027188|Smyd3|69726|SET and MYND domain containing 3	BC019663|Smyd3|69726|SET and MYND domain containing 3	AK043988|Smyd3|69726|SET and MYND domain containing 3	AK087728|Smyd3|69726|SET and MYND domain containing 3
mm9_v1_chr2_+_181100083_181100251	0.321309	NHLH1,2.p2	AK159801|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_001048148|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK049764|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC021513|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC004646|Zgpat|229007|zinc finger, CCCH-type with G patch domain	BC027218|Zgpat|229007|zinc finger, CCCH-type with G patch domain	AK052236|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chrX_-_99447501_99447506	0.320799	NHLH1,2.p2	AK148042|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	U65091|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
mm9_v1_chr1_+_136312291_136312502	0.320184	NHLH1,2.p2	AK143680|Adipor1|72674|adiponectin receptor 1	AK181422|Adipor1|72674|adiponectin receptor 1
mm9_v1_chr7_+_116895582_116895839	0.319969	NHLH1,2.p2	AK015280|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene	AK031634|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene	AK050574|4930431P19Rik|73886|RIKEN cDNA 4930431P19 gene
mm9_v1_chr6_+_30351902_30351953	0.319777	NHLH1,2.p2	AK172923|Klhdc10|76788|kelch domain containing 10	BC060132|Klhdc10|76788|kelch domain containing 10	NM_029742|Klhdc10|76788|kelch domain containing 10	AK039732|Klhdc10|76788|kelch domain containing 10	AK053834|Klhdc10|76788|kelch domain containing 10	AK085130|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr11_+_101017307_101017403	0.319705	NHLH1,2.p2	BC051439|Tubg2|103768|tubulin, gamma 2	AB158481|Tubg2|103768|tubulin, gamma 2
mm9_v1_chr8_-_110112368_110112383	0.318429	NHLH1,2.p2	NM_010817|Psmd7|17463|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
mm9_v1_chr1_-_95531961_95532109	0.318349	NHLH1,2.p2	AF004934|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr11_+_67399999_67400271	0.318207	NHLH1,2.p2	AK031455|Gas7|14457|growth arrest specific 7	NM_001109657|Gas7|14457|growth arrest specific 7	AK154463|Gas7|14457|growth arrest specific 7	AK017394|Gas7|14457|growth arrest specific 7
mm9_v1_chr5_-_3802874_3803076	0.318114	NHLH1,2.p2	BC145510|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC145511|Ankib1|70797|ankyrin repeat and IBR domain containing 1	BC150792|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK129343|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr5_-_145927900_145927928	0.31807	NHLH1,2.p2	BC083097|Ptcd1|71799|pentatricopeptide repeat domain 1	AK171484|Ptcd1|71799|pentatricopeptide repeat domain 1	AK143877|Ptcd1|71799|pentatricopeptide repeat domain 1	AK150514|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr15_+_85709732_85709805	0.31801	NHLH1,2.p2	AK043532|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK044059|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AY349617|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK005541|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK041084|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	NM_028063|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	BC051548|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	BC061026|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	AK003480|Trmu|72026|tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
mm9_v1_chr6_-_22306070_22306242	0.317566	NHLH1,2.p2	AY424275|Fam3c|27999|family with sequence similarity 3, member C	BC009086|Fam3c|27999|family with sequence similarity 3, member C	NM_138587|Fam3c|27999|family with sequence similarity 3, member C	BC055853|Fam3c|27999|family with sequence similarity 3, member C	AK154498|Fam3c|27999|family with sequence similarity 3, member C	AK170887|Fam3c|27999|family with sequence similarity 3, member C	BC069880|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr2_+_25356320_25356408	0.317108	NHLH1,2.p2	AF176520|Fbxw5|30839|F-box and WD-40 domain protein 5	BC010776|Fbxw5|30839|F-box and WD-40 domain protein 5	AK154911|Fbxw5|30839|F-box and WD-40 domain protein 5
mm9_v1_chr5_-_136387191_136387399	0.316882	NHLH1,2.p2	AK186358|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr5_-_75440460_75440521	0.316245	NHLH1,2.p2	BC116971|Chic2|74277|cysteine-rich hydrophobic domain 2	BC116973|Chic2|74277|cysteine-rich hydrophobic domain 2
mm9_v1_chr5_+_36100605_36100668	0.315457	NHLH1,2.p2	AY274116|Ablim2|231148|actin-binding LIM protein 2	BC141125|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr5_+_114185982_114186036	0.315175	NHLH1,2.p2	AK044446|Ficd|231630|FIC domain containing	AK054325|Ficd|231630|FIC domain containing
mm9_v1_chr11_-_102758460_102758513	0.314722	NHLH1,2.p2	BC139357|Gfap|14580|glial fibrillary acidic protein	BC139358|Gfap|14580|glial fibrillary acidic protein	NM_001131020|Gfap|14580|glial fibrillary acidic protein	NM_010277|Gfap|14580|glial fibrillary acidic protein
mm9_v1_chr6_+_83004687_83004775	0.314457	NHLH1,2.p2	AK171202|Aup1|11993|ancient ubiquitous protein 1	AK171011|Aup1|11993|ancient ubiquitous protein 1	AK171184|Aup1|11993|ancient ubiquitous protein 1	BC016485|Aup1|11993|ancient ubiquitous protein 1	AK144497|Aup1|11993|ancient ubiquitous protein 1	AK158035|Aup1|11993|ancient ubiquitous protein 1	AK167335|Aup1|11993|ancient ubiquitous protein 1	AK171249|Aup1|11993|ancient ubiquitous protein 1	AK171541|Aup1|11993|ancient ubiquitous protein 1	U41736|Aup1|11993|ancient ubiquitous protein 1	AK171621|Aup1|11993|ancient ubiquitous protein 1	BC012699|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr7_+_133966816_133966816	0.314396	NHLH1,2.p2	AK131642|Fam57b|68952|family with sequence similarity 57, member B	NM_029978|Fam57b|68952|family with sequence similarity 57, member B
mm9_v1_chr8_+_12915892_12915957	0.314126	NHLH1,2.p2	NM_178076|Mcf2l|17207|mcf.2 transforming sequence-like	AK082849|Mcf2l|17207|mcf.2 transforming sequence-like	AK048898|Mcf2l|17207|mcf.2 transforming sequence-like	BC058622|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr16_-_18343944_18344024	0.314051	NHLH1,2.p2	BC005445|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	AK089239|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	AK047383|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	AK133588|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed	NM_138583|D16H22S680E|27883|DNA segment, Chr 16, human D22S680E, expressed
mm9_v1_chr11_-_109472695_109472714	0.314027	NHLH1,2.p2	NM_145940|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK031672|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK045131|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK050495|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chrX_-_102052460_102052605	0.313932	NHLH1,2.p2	BC132640|Magee2|272790|melanoma antigen, family E, 2	BC138210|Magee2|272790|melanoma antigen, family E, 2	BC094361|Magee2|272790|melanoma antigen, family E, 2	AK134670|Magee2|272790|melanoma antigen, family E, 2	AK036343|Magee2|272790|melanoma antigen, family E, 2	NM_053206|Magee2|272790|melanoma antigen, family E, 2
mm9_v1_chr12_+_77425836_77425924	0.313868	NHLH1,2.p2	AK139319|Akap5|238276|A kinase (PRKA) anchor protein 5	NM_001101471|Akap5|238276|A kinase (PRKA) anchor protein 5
mm9_v1_chr15_-_76180500_76180651	0.313699	NHLH1,2.p2	AK178398|Sharpin|106025|SHANK-associated RH domain interacting protein
mm9_v1_chr2_+_29821079_29821243	0.313531	NHLH1,2.p2	NM_001076554|Spna2|20740|spectrin alpha 2	NM_001177667|Spna2|20740|spectrin alpha 2	NM_001177668|Spna2|20740|spectrin alpha 2	AK037683|Spna2|20740|spectrin alpha 2	AK132224|Spna2|20740|spectrin alpha 2	AK147317|Spna2|20740|spectrin alpha 2	AK085063|Spna2|20740|spectrin alpha 2	AK141149|Spna2|20740|spectrin alpha 2	BC049351|Spna2|20740|spectrin alpha 2	BC150941|Spna2|20740|spectrin alpha 2	BC158015|Spna2|20740|spectrin alpha 2	BC172095|Spna2|20740|spectrin alpha 2
mm9_v1_chr17_+_46297980_46297995	0.313112	NHLH1,2.p2	NM_001145979|Gtpbp2|56055|GTP binding protein 2	NM_019581|Gtpbp2|56055|GTP binding protein 2
mm9_v1_chr1_+_136352075_136352146	0.312836	NHLH1,2.p2	AK034170|Klhl12|240756|kelch-like 12 (Drosophila)	AK165280|Klhl12|240756|kelch-like 12 (Drosophila)	BC034514|Klhl12|240756|kelch-like 12 (Drosophila)	NM_153128|Klhl12|240756|kelch-like 12 (Drosophila)
mm9_v1_chr5_-_73729789_73729885	0.312187	NHLH1,2.p2	BC044883|Ociad2|433904|OCIA domain containing 2	AK007617|Ociad2|433904|OCIA domain containing 2	NM_026950|Ociad2|433904|OCIA domain containing 2
mm9_v1_chrX_+_132330678_132330726	0.312093	NHLH1,2.p2	AK050919|Gprasp1|67298|G protein-coupled receptor associated sorting protein 1
mm9_v1_chr11_+_116704983_116705004	0.31208	NHLH1,2.p2	AK003450|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene	AK160133|1110005A03Rik|74319|RIKEN cDNA 1110005A03 gene
mm9_v1_chr5_-_107125559_107125584	0.311954	NHLH1,2.p2	AK162026|Zfp644|52397|zinc finger protein 644
mm9_v1_chr10_-_77707385_77707420	0.311403	NHLH1,2.p2	AK166500|Trappc10|216131|trafficking protein particle complex 10	NM_001081055|Trappc10|216131|trafficking protein particle complex 10
mm9_v1_chr12_-_103943059_103943209	0.311308	NHLH1,2.p2	BC056464|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	AK038913|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase	NM_172584|Itpk1|217837|inositol 1,3,4-triphosphate 5/6 kinase
mm9_v1_chr9_-_20877907_20878057	0.31116	NHLH1,2.p2	AK010211|Fdx1l|68165|ferredoxin 1-like	AK008401|Fdx1l|68165|ferredoxin 1-like	AK020979|Fdx1l|68165|ferredoxin 1-like	NM_001039824|Fdx1l|68165|ferredoxin 1-like	BC061189|Fdx1l|68165|ferredoxin 1-like	BC172154|Fdx1l|68165|ferredoxin 1-like
mm9_v1_chr10_+_105011586_105011626	0.310981	NHLH1,2.p2	AK034146|9330159K06|327812|hypothetical protein 9330159K06
mm9_v1_chr10_-_17667872_17667872	0.310833	NHLH1,2.p2	AK132340|Heca|380629|headcase homolog (Drosophila)	NM_001033432|Heca|380629|headcase homolog (Drosophila)
mm9_v1_chr15_-_34608600_34608626	0.310799	NHLH1,2.p2	AK038556|Nipal2|223473|NIPA-like domain containing 2	BC058207|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr13_-_69672987_69673063	0.310755	NHLH1,2.p2	
mm9_v1_chr5_-_148211881_148212064	0.310255	NHLH1,2.p2	AK149292|Flt3|14255|FMS-like tyrosine kinase 3	AK045865|Flt3|14255|FMS-like tyrosine kinase 3	X59398|Flt3|14255|FMS-like tyrosine kinase 3	AK163640|Flt3|14255|FMS-like tyrosine kinase 3	NM_010229|Flt3|14255|FMS-like tyrosine kinase 3
mm9_v1_chrX_+_109714134_109714134	0.309914	NHLH1,2.p2	AK038956|Zfp711|245595|zinc finger protein 711	NM_177747|Zfp711|245595|zinc finger protein 711
mm9_v1_chr18_-_12394814_12394820	0.309761	NHLH1,2.p2	AK154282|Npc1|18145|Niemann Pick type C1	AK155379|Npc1|18145|Niemann Pick type C1
mm9_v1_chr6_+_114593104_114593174	0.309744	NHLH1,2.p2	AK007484|Atg7|74244|autophagy-related 7 (yeast)	NM_028835|Atg7|74244|autophagy-related 7 (yeast)	AK166023|Atg7|74244|autophagy-related 7 (yeast)	AK170769|Atg7|74244|autophagy-related 7 (yeast)	AK146992|Atg7|74244|autophagy-related 7 (yeast)	AK161133|Atg7|74244|autophagy-related 7 (yeast)	AK165653|Atg7|74244|autophagy-related 7 (yeast)	AK166074|Atg7|74244|autophagy-related 7 (yeast)	AK171968|Atg7|74244|autophagy-related 7 (yeast)	AK172272|Atg7|74244|autophagy-related 7 (yeast)	BC058597|Atg7|74244|autophagy-related 7 (yeast)
mm9_v1_chr2_-_166539223_166539286	0.309553	NHLH1,2.p2	BC151074|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	BC157940|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm9_v1_chr13_-_101322416_101322452	0.308959	NHLH1,2.p2	BC138679|Ocln|18260|occludin	BC138680|Ocln|18260|occludin	BC145371|Ocln|18260|occludin	AK042576|Ocln|18260|occludin	NM_008756|Ocln|18260|occludin
mm9_v1_chrX_+_19636666_19636695	0.308427	NHLH1,2.p2	AK011202|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	AB040710|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	AB046929|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7	NM_021715|Chst7|60322|carbohydrate (N-acetylglucosamino) sulfotransferase 7
mm9_v1_chr3_-_8667013_8667038	0.308281	NHLH1,2.p2	AF232241|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AF172286|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	BC086635|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AK140212|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	NM_010423|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1	AK011149|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1
mm9_v1_chr10_+_42398721_42398783	0.307457	NHLH1,2.p2	AK044897|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AF533890|Ostm1|14628|osteopetrosis associated transmembrane protein 1	NM_172416|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK004546|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK050513|Ostm1|14628|osteopetrosis associated transmembrane protein 1	AK053664|Ostm1|14628|osteopetrosis associated transmembrane protein 1	BC057635|Ostm1|14628|osteopetrosis associated transmembrane protein 1
mm9_v1_chr6_-_137597719_137597737	0.307263	NHLH1,2.p2	AK148424|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr1_-_23929098_23929255	0.307128	NHLH1,2.p2	BC006946|Smap1|98366|stromal membrane-associated protein 1	NM_028534|Smap1|98366|stromal membrane-associated protein 1	BC100537|Smap1|98366|stromal membrane-associated protein 1
mm9_v1_chr7_+_105805420_105805457	0.307101	NHLH1,2.p2	
mm9_v1_chr1_-_98768703_98768747	0.306451	NHLH1,2.p2	BC119022|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	AK049944|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	AK049253|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	AY654588|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1	NM_172658|Slco4c1|227394|solute carrier organic anion transporter family, member 4C1
mm9_v1_chr9_+_121619443_121619529	0.306411	NHLH1,2.p2	AK049702|Deb1|26901|differentially expressed in B16F10 1	AK003863|Deb1|26901|differentially expressed in B16F10 1	BC027548|Deb1|26901|differentially expressed in B16F10 1	NM_026794|Deb1|26901|differentially expressed in B16F10 1
mm9_v1_chr14_-_70842930_70842958	0.306342	NHLH1,2.p2	AK013165|Polr3d|67065|polymerase (RNA) III (DNA directed) polypeptide D
mm9_v1_chr11_-_114657186_114657223	0.306228	NHLH1,2.p2	BC060053|Btbd17|72014|BTB (POZ) domain containing 17	BC122876|Btbd17|72014|BTB (POZ) domain containing 17	AK032100|Btbd17|72014|BTB (POZ) domain containing 17	NM_028055|Btbd17|72014|BTB (POZ) domain containing 17	AK046050|Btbd17|72014|BTB (POZ) domain containing 17	AK005160|Btbd17|72014|BTB (POZ) domain containing 17	BC057599|Btbd17|72014|BTB (POZ) domain containing 17
mm9_v1_chr2_+_59450123_59450159	0.306084	NHLH1,2.p2	
mm9_v1_chr11_-_4018706_4018793	0.306046	NHLH1,2.p2	BC005759|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)	NM_144520|Sec14l2|67815|SEC14-like 2 (S. cerevisiae)
mm9_v1_chr9_-_21116749_21116776	0.305761	NHLH1,2.p2	AF067146|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK010478|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK082674|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	NM_001110300|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	NM_009678|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit
mm9_v1_chr4_-_41586992_41587010	0.305705	NHLH1,2.p2	BC021944|Enho|69638|energy homeostasis associated
mm9_v1_chr6_+_113342490_113342490	0.305167	NHLH1,2.p2	AM690746|Ttll3|101100|tubulin tyrosine ligase-like family, member 3	NM_133923|Ttll3|101100|tubulin tyrosine ligase-like family, member 3
mm9_v1_chr8_-_23916037_23916141	0.305086	NHLH1,2.p2	BC030484|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	BC027301|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK017991|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK134634|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK082988|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK080668|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK081220|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AY039763|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	AK077365|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_001122820|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit	NM_029505|Ap3m2|64933|adaptor-related protein complex 3, mu 2 subunit
mm9_v1_chr19_-_7557553_7557640	0.304991	NHLH1,2.p2	AY507126|Rtn3|20168|reticulon 3	AK146505|Rtn3|20168|reticulon 3
mm9_v1_chr10_+_126921038_126921212	0.304935	NHLH1,2.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr15_-_31460752_31460820	0.304516	NHLH1,2.p2	AK132461|March6|223455|membrane-associated ring finger (C3HC4) 6	AK089827|March6|223455|membrane-associated ring finger (C3HC4) 6	NM_172606|March6|223455|membrane-associated ring finger (C3HC4) 6
mm9_v1_chr4_+_139178924_139178962	0.30438	NHLH1,2.p2	BC056226|Aldh4a1|212647|aldehyde dehydrogenase 4 family, member A1
mm9_v1_chr12_-_82434150_82434166	0.304257	NHLH1,2.p2	AK139260|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	AF453257|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	AK044636|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	NM_001167920|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3	NM_080440|Slc8a3|110893|solute carrier family 8 (sodium/calcium exchanger), member 3
mm9_v1_chr11_-_59041767_59041787	0.303918	NHLH1,2.p2	NM_007476|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr11_+_77275811_77275917	0.303509	NHLH1,2.p2	
mm9_v1_chr19_+_6418755_6418803	0.302888	NHLH1,2.p2	AK147295|Nrxn2|18190|neurexin II	AK147665|Nrxn2|18190|neurexin II
mm9_v1_chr1_-_178143971_178144072	0.302752	NHLH1,2.p2	AK082725|Pld5|319455|phospholipase D family, member 5	NM_001195816|Pld5|319455|phospholipase D family, member 5
mm9_v1_chrX_+_8777098_8777242	0.302744	NHLH1,2.p2	AK031623|Lancl3|236285|LanC lantibiotic synthetase component C-like 3 (bacterial)	NM_173414|Lancl3|236285|LanC lantibiotic synthetase component C-like 3 (bacterial)	BC115944|Lancl3|236285|LanC lantibiotic synthetase component C-like 3 (bacterial)
mm9_v1_chr7_-_134028480_134028480	0.30248	NHLH1,2.p2	NM_001163774|Taok2|381921|TAO kinase 2	NM_001163775|Taok2|381921|TAO kinase 2
mm9_v1_chr10_-_128356215_128356352	0.30202	NHLH1,2.p2	AF013288|Rdh5|19682|retinol dehydrogenase 5	BC021372|Rdh5|19682|retinol dehydrogenase 5	AF033196|Rdh5|19682|retinol dehydrogenase 5	AK033063|Rdh5|19682|retinol dehydrogenase 5	AK135139|Rdh5|19682|retinol dehydrogenase 5	NM_134006|Rdh5|19682|retinol dehydrogenase 5
mm9_v1_chr10_-_62041134_62041209	0.301953	NHLH1,2.p2	AK149629|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK003009|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK158730|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC055307|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC090974|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	BC046485|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK161007|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK129320|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK035659|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	AK141324|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene	NM_028197|2510003E04Rik|72320|RIKEN cDNA 2510003E04 gene
mm9_v1_chrX_+_45976982_45977308	0.301908	NHLH1,2.p2	NM_001166450|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	BC048692|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155812|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155813|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr4_+_129277911_129277964	0.301715	NHLH1,2.p2	AK045767|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK016715|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK005111|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK171961|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	AK050648|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	BC024696|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	BC025081|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene	NM_029748|2510006D16Rik|76799|RIKEN cDNA 2510006D16 gene
mm9_v1_chr1_-_108656198_108656318	0.300618	NHLH1,2.p2	AK170064|Kdsr|70750|3-ketodihydrosphingosine reductase	AY634684|Kdsr|70750|3-ketodihydrosphingosine reductase	AK018155|Kdsr|70750|3-ketodihydrosphingosine reductase	BC023820|Kdsr|70750|3-ketodihydrosphingosine reductase	NM_027534|Kdsr|70750|3-ketodihydrosphingosine reductase
mm9_v1_chr9_-_103382586_103382657	0.300602	NHLH1,2.p2	AK134810|Bfsp2|107993|beaded filament structural protein 2, phakinin	BC068172|Bfsp2|107993|beaded filament structural protein 2, phakinin	NM_001002896|Bfsp2|107993|beaded filament structural protein 2, phakinin
mm9_v1_chr19_+_6276685_6276733	0.300116	NHLH1,2.p2	AK088980|Ehd1|13660|EH-domain containing 1	AK172669|Ehd1|13660|EH-domain containing 1
mm9_v1_chr16_-_85080242_85080258	0.298756	NHLH1,2.p2	BC005490|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr7_-_28118628_28118706	0.298671	NHLH1,2.p2	AK054297|Ltbp4|108075|latent transforming growth factor beta binding protein 4	BC059016|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AF410799|Ltbp4|108075|latent transforming growth factor beta binding protein 4	BC032073|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AK147753|Ltbp4|108075|latent transforming growth factor beta binding protein 4	NM_001113549|Ltbp4|108075|latent transforming growth factor beta binding protein 4	AK157031|Ltbp4|108075|latent transforming growth factor beta binding protein 4
mm9_v1_chr1_+_137662648_137662798	0.298666	NHLH1,2.p2	NM_013750|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	AK003767|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	BC023376|Phlda3|27280|pleckstrin homology-like domain, family A, member 3	BC023408|Phlda3|27280|pleckstrin homology-like domain, family A, member 3
mm9_v1_chr2_-_130490351_130490380	0.298192	NHLH1,2.p2	BC115616|Ddrgk1|77006|DDRGK domain containing 1	BC115617|Ddrgk1|77006|DDRGK domain containing 1	NM_029832|Ddrgk1|77006|DDRGK domain containing 1
mm9_v1_chr11_-_86570918_86571097	0.297942	NHLH1,2.p2	AK158438|Cltc|67300|clathrin, heavy polypeptide (Hc)	BC079897|Cltc|67300|clathrin, heavy polypeptide (Hc)	NM_001003908|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK171732|Cltc|67300|clathrin, heavy polypeptide (Hc)	AK156869|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr9_-_108363229_108363406	0.297791	NHLH1,2.p2	AK157991|Klhdc8b|78267|kelch domain containing 8B	AK087143|Klhdc8b|78267|kelch domain containing 8B	AK154428|Klhdc8b|78267|kelch domain containing 8B
mm9_v1_chr15_-_79762947_79763095	0.297258	NHLH1,2.p2	AB221539|Cbx7|52609|chromobox homolog 7	AK045714|Cbx7|52609|chromobox homolog 7	NM_144811|Cbx7|52609|chromobox homolog 7
mm9_v1_chr10_-_83111346_83111470	0.296672	NHLH1,2.p2	BC048906|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK171512|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK168748|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK168403|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK160105|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK160075|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AY113706|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	NM_145220|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK161003|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	AK154525|Appl2|216190|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2
mm9_v1_chr2_+_151931424_151931452	0.295379	NHLH1,2.p2	AK161066|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)	BC011325|Srxn1|76650|sulfiredoxin 1 homolog (S. cerevisiae)
mm9_v1_chr19_-_8788307_8788398	0.29514	NHLH1,2.p2	X14309|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AB023408|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	U25708|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	BC065173|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK090046|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK165550|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	AK165417|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	NM_008577|Slc3a2|17254|solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2
mm9_v1_chr2_-_25947338_25947397	0.295122	NHLH1,2.p2	AK043047|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr6_-_42274556_42274690	0.294991	NHLH1,2.p2	AK163654|Fam131b|76156|family with sequence similarity 131, member B	AK047763|Fam131b|76156|family with sequence similarity 131, member B	AK018206|Fam131b|76156|family with sequence similarity 131, member B	AK018325|Fam131b|76156|family with sequence similarity 131, member B	AK158869|Fam131b|76156|family with sequence similarity 131, member B	NM_001113327|Fam131b|76156|family with sequence similarity 131, member B	NM_029528|Fam131b|76156|family with sequence similarity 131, member B
mm9_v1_chr4_-_93001912_93002119	0.294028	NHLH1,2.p2	AK008612|Tusc1|69136|tumor suppressor candidate 1
mm9_v1_chr19_+_44368576_44368577	0.293966	NHLH1,2.p2	M26270|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr12_+_77182878_77182935	0.293893	NHLH1,2.p2	FJ848978|Syne2|319565|synaptic nuclear envelope 2
mm9_v1_chr9_-_77392505_77392711	0.293686	NHLH1,2.p2	BC087542|Lrrc1|214345|leucine rich repeat containing 1	AK079854|Lrrc1|214345|leucine rich repeat containing 1	BC046591|Lrrc1|214345|leucine rich repeat containing 1	AK051043|Lrrc1|214345|leucine rich repeat containing 1	AK147075|Lrrc1|214345|leucine rich repeat containing 1	NM_001146048|Lrrc1|214345|leucine rich repeat containing 1	AK220166|Lrrc1|214345|leucine rich repeat containing 1
mm9_v1_chr12_+_70298163_70298251	0.292342	NHLH1,2.p2	AK161156|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK154174|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene	AK034052|9330151L19Rik|414085|RIKEN cDNA 9330151L19 gene
mm9_v1_chr9_+_86910371_86910467	0.292304	NHLH1,2.p2	AB212223|Ripply2|382089|ripply2 homolog (zebrafish)	NM_001037907|Ripply2|382089|ripply2 homolog (zebrafish)	AK081203|Ripply2|382089|ripply2 homolog (zebrafish)
mm9_v1_chr9_-_62996767_62996767	0.292075	NHLH1,2.p2	AK029916|Skor1|207667|SKI family transcriptional corepressor 1	NM_001163758|Skor1|207667|SKI family transcriptional corepressor 1
mm9_v1_chr18_+_37581071_37581102	0.292048	NHLH1,2.p2	AK078189|Pcdhb11|93882|protocadherin beta 11	NM_053136|Pcdhb11|93882|protocadherin beta 11	AK160803|Pcdhb11|93882|protocadherin beta 11
mm9_v1_chr11_-_100573772_100573800	0.29127	NHLH1,2.p2	AK155791|Kat2a|14534|K(lysine) acetyltransferase 2A	AK155842|Kat2a|14534|K(lysine) acetyltransferase 2A	NM_001038010|Kat2a|14534|K(lysine) acetyltransferase 2A	NM_020004|Kat2a|14534|K(lysine) acetyltransferase 2A
mm9_v1_chr11_+_51419592_51419613	0.291018	NHLH1,2.p2	
mm9_v1_chr2_+_164312023_164312078	0.290467	NHLH1,2.p2	BC019947|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	AY187289|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr11_-_53380806_53380815	0.290444	NHLH1,2.p2	AK040599|A430108G06Rik|319650|RIKEN cDNA A430108G06 gene	AK038603|A430108G06Rik|319650|RIKEN cDNA A430108G06 gene
mm9_v1_chr9_-_59201234_59201314	0.290336	NHLH1,2.p2	BC055797|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC089507|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK141430|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC092531|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK039560|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK089970|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	AK134734|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC145771|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	BC145773|Bbs4|102774|Bardet-Biedl syndrome 4 (human)	NM_175325|Bbs4|102774|Bardet-Biedl syndrome 4 (human)
mm9_v1_chr11_+_20443315_20443422	0.290319	NHLH1,2.p2	AB041541|Sertad2|58172|SERTA domain containing 2	BC014726|Sertad2|58172|SERTA domain containing 2
mm9_v1_chr10_+_41210244_41210283	0.290211	NHLH1,2.p2	NM_028430|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6	BC147756|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6	BC147757|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6	AK013818|Ppil6|73075|peptidylprolyl isomerase (cyclophilin)-like 6
mm9_v1_chr14_+_22569802_22569824	0.28984	NHLH1,2.p2	AK075749|Samd8|67630|sterile alpha motif domain containing 8
mm9_v1_chr15_+_79346819_79346984	0.289773	NHLH1,2.p2	NM_134090|Kdelr3|105785|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	AK136991|Kdelr3|105785|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	BC011472|Kdelr3|105785|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	BC024420|Kdelr3|105785|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	AK208352|Kdelr3|105785|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3
mm9_v1_chr6_-_57775039_57775171	0.289464	NHLH1,2.p2	BC024884|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170152|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK170832|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK030975|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	BC024822|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	NM_146168|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK031812|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK158041|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1	AK165256|Vopp1|232023|vesicular, overexpressed in cancer, prosurvival protein 1
mm9_v1_chr4_-_117587421_117587631	0.289273	NHLH1,2.p2	AK149978|Ipo13|230673|importin 13	AK148263|Ipo13|230673|importin 13	AK052257|Ipo13|230673|importin 13	NM_146152|Ipo13|230673|importin 13
mm9_v1_chr3_-_95861752_95861793	0.28912	NHLH1,2.p2	AK083678|Vps45|22365|vacuolar protein sorting 45 (yeast)	BC058528|Vps45|22365|vacuolar protein sorting 45 (yeast)	AK146190|Vps45|22365|vacuolar protein sorting 45 (yeast)	AK168101|Vps45|22365|vacuolar protein sorting 45 (yeast)
mm9_v1_chr11_-_101032604_101032630	0.288669	NHLH1,2.p2	BC020025|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	NM_146030|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	AK154510|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	AK164128|Plekhh3|217198|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm9_v1_chr7_-_85722668_85722860	0.288662	NHLH1,2.p2	AY336094|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_008746|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	NM_182809|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	BC139764|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035399|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3	AF035400|Ntrk3|18213|neurotrophic tyrosine kinase, receptor, type 3
mm9_v1_chr4_-_137881771_137881842	0.288647	NHLH1,2.p2	AK215426|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr15_-_89204248_89204287	0.288543	NHLH1,2.p2	BC019554|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	NM_001111288|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)	AK013765|Sco2|100126824|SCO cytochrome oxidase deficient homolog 2 (yeast)
mm9_v1_chr10_-_115910578_115910595	0.2869	NHLH1,2.p2	AF215892|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC117779|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	NM_021452|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4	BC048471|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm9_v1_chr5_+_128112613_128112632	0.286457	NHLH1,2.p2	AK050379|Glt1d1|319804|glycosyltransferase 1 domain containing 1	AK077577|Glt1d1|319804|glycosyltransferase 1 domain containing 1	BC115464|Glt1d1|319804|glycosyltransferase 1 domain containing 1	NM_177005|Glt1d1|319804|glycosyltransferase 1 domain containing 1
mm9_v1_chr9_+_43875175_43875249	0.286161	NHLH1,2.p2	AY255638|Usp2|53376|ubiquitin specific peptidase 2	AY255639|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr10_-_75700507_75700611	0.286102	NHLH1,2.p2	BC122563|Prmt2|15468|protein arginine N-methyltransferase 2	BC125275|Prmt2|15468|protein arginine N-methyltransferase 2	AF169620|Prmt2|15468|protein arginine N-methyltransferase 2	BC088997|Prmt2|15468|protein arginine N-methyltransferase 2	AK144412|Prmt2|15468|protein arginine N-methyltransferase 2	AK146754|Prmt2|15468|protein arginine N-methyltransferase 2	AK077456|Prmt2|15468|protein arginine N-methyltransferase 2	AK145829|Prmt2|15468|protein arginine N-methyltransferase 2	AK146966|Prmt2|15468|protein arginine N-methyltransferase 2	AK159186|Prmt2|15468|protein arginine N-methyltransferase 2	AK140200|Prmt2|15468|protein arginine N-methyltransferase 2	NM_001077638|Prmt2|15468|protein arginine N-methyltransferase 2	NM_133182|Prmt2|15468|protein arginine N-methyltransferase 2
mm9_v1_chr19_-_5661634_5661648	0.285831	NHLH1,2.p2	D11374|Sipa1|20469|signal-induced proliferation associated gene 1
mm9_v1_chr18_-_33623069_33623089	0.285811	NHLH1,2.p2	BC054762|D0H4S114|27528|DNA segment, human D4S114	NM_001109990|D0H4S114|27528|DNA segment, human D4S114	X70398|D0H4S114|27528|DNA segment, human D4S114	AK048361|D0H4S114|27528|DNA segment, human D4S114	AK081502|D0H4S114|27528|DNA segment, human D4S114	AK133769|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr8_-_13974679_13974776	0.285533	NHLH1,2.p2	BC099613|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166972|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK166875|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK077810|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132465|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC132467|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	BC145286|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	AK163687|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene	NM_173744|2610019F03Rik|72148|RIKEN cDNA 2610019F03 gene
mm9_v1_chrX_-_152057864_152057869	0.284685	NHLH1,2.p2	BC116313|Ptchd1|211612|patched domain containing 1	BC116312|Ptchd1|211612|patched domain containing 1	NM_001093750|Ptchd1|211612|patched domain containing 1
mm9_v1_chr16_-_45158709_45158787	0.28438	NHLH1,2.p2	AK030566|Slc35a5|74102|solute carrier family 35, member A5	AK003124|Slc35a5|74102|solute carrier family 35, member A5	AK052833|Slc35a5|74102|solute carrier family 35, member A5	BC011115|Slc35a5|74102|solute carrier family 35, member A5	AK085567|Slc35a5|74102|solute carrier family 35, member A5	AK033921|Slc35a5|74102|solute carrier family 35, member A5	AK170026|Slc35a5|74102|solute carrier family 35, member A5	AK034527|Slc35a5|74102|solute carrier family 35, member A5	AK150825|Slc35a5|74102|solute carrier family 35, member A5	AK151484|Slc35a5|74102|solute carrier family 35, member A5	NM_028756|Slc35a5|74102|solute carrier family 35, member A5
mm9_v1_chr5_-_65884033_65884124	0.284229	NHLH1,2.p2	AK003345|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene	BC009097|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene	AK164394|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene	NM_133697|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene	AK018994|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene	AK088833|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene
mm9_v1_chr2_+_166631011_166631132	0.283541	NHLH1,2.p2	AK087574|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	NM_001085495|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK087920|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	BC158012|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	AK153722|Arfgef2|99371|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm9_v1_chr7_-_129125061_129125233	0.283166	NHLH1,2.p2	AK191299|Cog7|233824|component of oligomeric golgi complex 7	AK030709|Cog7|233824|component of oligomeric golgi complex 7	AK145163|Cog7|233824|component of oligomeric golgi complex 7	AK154693|Cog7|233824|component of oligomeric golgi complex 7	NM_001033318|Cog7|233824|component of oligomeric golgi complex 7	AK172200|Cog7|233824|component of oligomeric golgi complex 7	AK163143|Cog7|233824|component of oligomeric golgi complex 7
mm9_v1_chr2_+_153171730_153171874	0.283004	NHLH1,2.p2	AK122413|Asxl1|228790|additional sex combs like 1 (Drosophila)	NM_001039939|Asxl1|228790|additional sex combs like 1 (Drosophila)
mm9_v1_chr5_+_76613120_76613173	0.282793	NHLH1,2.p2	BC141081|Tmem165|21982|transmembrane protein 165
mm9_v1_chr11_+_60231046_60231167	0.282463	NHLH1,2.p2	AK077759|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene	AJ404329|4933439F18Rik|66771|RIKEN cDNA 4933439F18 gene
mm9_v1_chr3_+_157229838_157229863	0.282124	NHLH1,2.p2	BC058742|Ptger3|19218|prostaglandin E receptor 3 (subtype EP3)	NM_011196|Ptger3|19218|prostaglandin E receptor 3 (subtype EP3)	D10204|Ptger3|19218|prostaglandin E receptor 3 (subtype EP3)	D13321|Ptger3|19218|prostaglandin E receptor 3 (subtype EP3)	D17406|Ptger3|19218|prostaglandin E receptor 3 (subtype EP3)
mm9_v1_chr13_+_37437194_37437308	0.280874	NHLH1,2.p2	AB007599|Ly86|17084|lymphocyte antigen 86	NM_010745|Ly86|17084|lymphocyte antigen 86	AK027929|Ly86|17084|lymphocyte antigen 86	BC096414|Ly86|17084|lymphocyte antigen 86	BC065783|Ly86|17084|lymphocyte antigen 86
mm9_v1_chr12_-_73509537_73509656	0.280849	NHLH1,2.p2	AB074899|Rtn1|104001|reticulon 1	CT010392|Rtn1|104001|reticulon 1	BC030455|Rtn1|104001|reticulon 1
mm9_v1_chr18_-_73914084_73914137	0.280544	NHLH1,2.p2	BC019371|Elac1|114615|elaC homolog 1 (E. coli)	AF308697|Elac1|114615|elaC homolog 1 (E. coli)	NM_053255|Elac1|114615|elaC homolog 1 (E. coli)
mm9_v1_chr2_-_24790645_24790743	0.280265	NHLH1,2.p2	AK088008|Arrdc1|215705|arrestin domain containing 1	AK170018|Arrdc1|215705|arrestin domain containing 1	BC018501|Arrdc1|215705|arrestin domain containing 1	BC004091|Arrdc1|215705|arrestin domain containing 1
mm9_v1_chr14_+_119498754_119498761	0.278848	NHLH1,2.p2	
mm9_v1_chr7_+_134120041_134120186	0.278316	NHLH1,2.p2	BC024413|Cdipt|52858|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm9_v1_chr10_+_61245998_61246044	0.278019	NHLH1,2.p2	
mm9_v1_chr10_+_93103715_93103796	0.277728	NHLH1,2.p2	NM_021320|Ntn4|57764|netrin 4
mm9_v1_chr1_-_34496516_34496516	0.277162	NHLH1,2.p2	BC019430|Ccdc115|69668|coiled-coil domain containing 115	NM_027159|Ccdc115|69668|coiled-coil domain containing 115
mm9_v1_chr11_+_61770264_61770301	0.277003	NHLH1,2.p2	AK143663|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1	AK046469|Specc1|432572|sperm antigen with calponin homology and coiled-coil domains 1
mm9_v1_chr5_+_81449776_81449780	0.276862	NHLH1,2.p2	AK155931|Lphn3|319387|latrophilin 3
mm9_v1_chr4_-_57314708_57314708	0.276727	NHLH1,2.p2	AK052928|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3	NM_011207|Ptpn3|545622|protein tyrosine phosphatase, non-receptor type 3
mm9_v1_chr10_+_43988135_43988181	0.276716	NHLH1,2.p2	AK028315|Atg5|11793|autophagy-related 5 (yeast)	NM_053069|Atg5|11793|autophagy-related 5 (yeast)
mm9_v1_chr7_-_135020290_135020344	0.276713	NHLH1,2.p2	BC028251|Zfp668|244219|zinc finger protein 668	AK047593|Zfp668|244219|zinc finger protein 668	AK081436|Zfp668|244219|zinc finger protein 668	AK053438|Zfp668|244219|zinc finger protein 668	NM_146259|Zfp668|244219|zinc finger protein 668	AK169556|Zfp668|244219|zinc finger protein 668
mm9_v1_chr9_-_52487410_52487541	0.276478	NHLH1,2.p2	BC109328|AI593442|330941|expressed sequence AI593442	NM_178906|AI593442|330941|expressed sequence AI593442	AK033979|AI593442|330941|expressed sequence AI593442
mm9_v1_chr15_-_6824238_6824366	0.276145	NHLH1,2.p2	AK040020|Osmr|18414|oncostatin M receptor	AK087179|Osmr|18414|oncostatin M receptor	AF058805|Osmr|18414|oncostatin M receptor	NM_011019|Osmr|18414|oncostatin M receptor
mm9_v1_chr13_+_64533703_64533885	0.276085	NHLH1,2.p2	AY005133|Cdk20|105278|cyclin-dependent kinase 20	BC031907|Cdk20|105278|cyclin-dependent kinase 20	NM_053180|Cdk20|105278|cyclin-dependent kinase 20	BC058353|Cdk20|105278|cyclin-dependent kinase 20
mm9_v1_chr11_-_75993134_75993143	0.27606	NHLH1,2.p2	AK009586|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK009727|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK009818|Vps53|68299|vacuolar protein sorting 53 (yeast)
mm9_v1_chr12_+_118772389_118772432	0.275842	NHLH1,2.p2	AK162220|Rapgef5|217944|Rap guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr8_+_23587151_23587348	0.275754	NHLH1,2.p2	NM_011394|Slc20a2|20516|solute carrier family 20, member 2	AK170985|Slc20a2|20516|solute carrier family 20, member 2	BC046510|Slc20a2|20516|solute carrier family 20, member 2	AK157206|Slc20a2|20516|solute carrier family 20, member 2	AK087507|Slc20a2|20516|solute carrier family 20, member 2
mm9_v1_chr11_-_119409041_119409133	0.275367	NHLH1,2.p2	BC139018|Nptx1|18164|neuronal pentraxin 1	BC139020|Nptx1|18164|neuronal pentraxin 1	BC093479|Nptx1|18164|neuronal pentraxin 1	NM_008730|Nptx1|18164|neuronal pentraxin 1
mm9_v1_chr15_-_75724685_75724730	0.275349	NHLH1,2.p2	AK159127|Naprt1|223646|nicotinate phosphoribosyltransferase domain containing 1	AK170518|Naprt1|223646|nicotinate phosphoribosyltransferase domain containing 1
mm9_v1_chr13_-_34744188_34744297	0.275153	NHLH1,2.p2	BC018520|1300014I06Rik|66895|RIKEN cDNA 1300014I06 gene
mm9_v1_chr9_+_21001148_21001171	0.274873	NHLH1,2.p2	NM_019798|Pde4a|18577|phosphodiesterase 4A, cAMP specific
mm9_v1_chr7_+_51639464_51639527	0.274858	NHLH1,2.p2	NM_001114116|Syt3|20981|synaptotagmin III	NM_016663|Syt3|20981|synaptotagmin III
mm9_v1_chr2_-_102241003_102241049	0.274795	NHLH1,2.p2	AJ249129|Trim44|80985|tripartite motif-containing 44	BC098369|Trim44|80985|tripartite motif-containing 44
mm9_v1_chr1_-_39707919_39708026	0.274752	NHLH1,2.p2	BC116790|Creg2|263764|cellular repressor of E1A-stimulated genes 2	BC116792|Creg2|263764|cellular repressor of E1A-stimulated genes 2	AK044192|Creg2|263764|cellular repressor of E1A-stimulated genes 2	NM_170597|Creg2|263764|cellular repressor of E1A-stimulated genes 2
mm9_v1_chr11_+_70376359_70376411	0.27475	NHLH1,2.p2	NM_001045959|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_001045964|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_016713|Mink1|50932|misshapen-like kinase 1 (zebrafish)	NM_176893|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB035697|Mink1|50932|misshapen-like kinase 1 (zebrafish)	AB041925|Mink1|50932|misshapen-like kinase 1 (zebrafish)
mm9_v1_chr11_+_77908168_77908192	0.274539	NHLH1,2.p2	AK085728|BC017647|216971|cDNA sequence BC017647	NM_145430|BC017647|216971|cDNA sequence BC017647	AK047860|BC017647|216971|cDNA sequence BC017647	AK140562|BC017647|216971|cDNA sequence BC017647
mm9_v1_chr7_-_36340851_36340869	0.274457	NHLH1,2.p2	X04097|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	BC138674|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19	BC138675|Nudt19|110959|nudix (nucleoside diphosphate linked moiety X)-type motif 19
mm9_v1_chr5_-_24348375_24348447	0.274426	NHLH1,2.p2	
mm9_v1_chr4_+_128561383_128561383	0.274406	NHLH1,2.p2	BC049095|Trim62|67525|tripartite motif-containing 62	NM_178110|Trim62|67525|tripartite motif-containing 62
mm9_v1_chr4_+_149003438_149003530	0.274314	NHLH1,2.p2	
mm9_v1_chr14_+_61757271_61757327	0.274033	NHLH1,2.p2	AK160797|Sacs|50720|sacsin	NM_172809|Sacs|50720|sacsin	AK046501|Sacs|50720|sacsin
mm9_v1_chr7_-_145589409_145589421	0.273935	NHLH1,2.p2	AK017700|Tcerg1l|70571|transcription elongation regulator 1-like	NM_183289|Tcerg1l|70571|transcription elongation regulator 1-like
mm9_v1_chr12_+_87165889_87165903	0.273776	NHLH1,2.p2	NM_001081423|Ttll5|320244|tubulin tyrosine ligase-like family, member 5
mm9_v1_chr11_+_53164518_53164596	0.273404	NHLH1,2.p2	BC138999|Aff4|93736|AF4/FMR2 family, member 4	BC145490|Aff4|93736|AF4/FMR2 family, member 4
mm9_v1_chr9_+_100543866_100543977	0.27286	NHLH1,2.p2	AK043215|Stag1|20842|stromal antigen 1	AK048671|Stag1|20842|stromal antigen 1
mm9_v1_chr7_-_135039020_135039157	0.272835	NHLH1,2.p2	AK008509|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK008578|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK002742|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	BC031732|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK013996|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	AK003237|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1	NM_178600|Vkorc1|27973|vitamin K epoxide reductase complex, subunit 1
mm9_v1_chr10_-_126558035_126558203	0.272811	NHLH1,2.p2	BC006844|Os9|216440|amplified in osteosarcoma	BC031768|Os9|216440|amplified in osteosarcoma	AK028047|Os9|216440|amplified in osteosarcoma
mm9_v1_chr19_-_6077175_6077225	0.272724	NHLH1,2.p2	BC051479|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	NM_001081041|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	AK137155|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	AK146211|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	AK014229|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	BC118930|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	BC118931|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene	BC034452|1110014N23Rik|68505|RIKEN cDNA 1110014N23 gene
mm9_v1_chr5_-_124545759_124545774	0.272406	NHLH1,2.p2	BC053014|Abcb9|56325|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm9_v1_chr8_+_114060659_114060939	0.271244	NHLH1,2.p2	BC086770|Znrf1|170737|zinc and ring finger 1	AF378525|Znrf1|170737|zinc and ring finger 1	BC006765|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr9_+_108472210_108472254	0.271037	NHLH1,2.p2	AK149963|Dalrd3|67789|DALR anticodon binding domain containing 3	NM_026378|Dalrd3|67789|DALR anticodon binding domain containing 3	AK002439|Dalrd3|67789|DALR anticodon binding domain containing 3	AK171818|Dalrd3|67789|DALR anticodon binding domain containing 3	AK169405|Dalrd3|67789|DALR anticodon binding domain containing 3	BC013483|Dalrd3|67789|DALR anticodon binding domain containing 3
mm9_v1_chr6_+_83745142_83745245	0.270412	NHLH1,2.p2	NM_001164187|Nagk|56174|N-acetylglucosamine kinase	AK155292|Nagk|56174|N-acetylglucosamine kinase	BC004689|Nagk|56174|N-acetylglucosamine kinase	AJ242911|Nagk|56174|N-acetylglucosamine kinase
mm9_v1_chrX_+_7339942_7339952	0.27028	NHLH1,2.p2	AF510653|Tcfe3|209446|transcription factor E3
mm9_v1_chrX_+_130829929_130829942	0.269957	NHLH1,2.p2	AK005180|Tmem35|67564|transmembrane protein 35	AK018535|Tmem35|67564|transmembrane protein 35	AK043881|Tmem35|67564|transmembrane protein 35	AK042538|Tmem35|67564|transmembrane protein 35
mm9_v1_chr7_-_134170532_134170710	0.269481	NHLH1,2.p2	BC004758|Maz|17188|MYC-associated zinc finger protein (purine-binding transcription factor)
mm9_v1_chr7_+_109118356_109118356	0.268862	NHLH1,2.p2	BC049791|Numa1|101706|nuclear mitotic apparatus protein 1	NM_133947|Numa1|101706|nuclear mitotic apparatus protein 1
mm9_v1_chr13_+_54890763_54890824	0.268861	NHLH1,2.p2	AK166272|Tspan17|74257|tetraspanin 17	NM_028841|Tspan17|74257|tetraspanin 17	AK171691|Tspan17|74257|tetraspanin 17	BC010346|Tspan17|74257|tetraspanin 17	AK008761|Tspan17|74257|tetraspanin 17
mm9_v1_chr5_-_90652790_90652982	0.268697	NHLH1,2.p2	BC038311|Cox18|231430|COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)
mm9_v1_chr5_+_110973321_110973404	0.268641	NHLH1,2.p2	NM_198306|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	AK032568|Galnt9|231605|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
mm9_v1_chr5_+_137729501_137729514	0.268469	NHLH1,2.p2	AK042335|Ache|11423|acetylcholinesterase	NM_009599|Ache|11423|acetylcholinesterase	AK043748|Ache|11423|acetylcholinesterase	AK140404|Ache|11423|acetylcholinesterase	AK036259|Ache|11423|acetylcholinesterase	AK046080|Ache|11423|acetylcholinesterase	AK036443|Ache|11423|acetylcholinesterase
mm9_v1_chr18_+_61265225_61265605	0.26828	NHLH1,2.p2	AK146069|Csf1r|12978|colony stimulating factor 1 receptor	NM_001037859|Csf1r|12978|colony stimulating factor 1 receptor	BC066863|Csf1r|12978|colony stimulating factor 1 receptor	BC050024|Csf1r|12978|colony stimulating factor 1 receptor	AK171241|Csf1r|12978|colony stimulating factor 1 receptor	AK156550|Csf1r|12978|colony stimulating factor 1 receptor	AK155565|Csf1r|12978|colony stimulating factor 1 receptor	AK155488|Csf1r|12978|colony stimulating factor 1 receptor	AK079247|Csf1r|12978|colony stimulating factor 1 receptor	AK155576|Csf1r|12978|colony stimulating factor 1 receptor	AK155858|Csf1r|12978|colony stimulating factor 1 receptor	AK154128|Csf1r|12978|colony stimulating factor 1 receptor	AK155640|Csf1r|12978|colony stimulating factor 1 receptor	AK155654|Csf1r|12978|colony stimulating factor 1 receptor	AK171386|Csf1r|12978|colony stimulating factor 1 receptor	AK004947|Csf1r|12978|colony stimulating factor 1 receptor	AK154556|Csf1r|12978|colony stimulating factor 1 receptor	AK154653|Csf1r|12978|colony stimulating factor 1 receptor	AK154699|Csf1r|12978|colony stimulating factor 1 receptor	AK076215|Csf1r|12978|colony stimulating factor 1 receptor	AK143545|Csf1r|12978|colony stimulating factor 1 receptor	X06368|Csf1r|12978|colony stimulating factor 1 receptor	X68932|Csf1r|12978|colony stimulating factor 1 receptor	AK080326|Csf1r|12978|colony stimulating factor 1 receptor	BC043054|Csf1r|12978|colony stimulating factor 1 receptor	AK089498|Csf1r|12978|colony stimulating factor 1 receptor	AK171543|Csf1r|12978|colony stimulating factor 1 receptor	BC036343|Csf1r|12978|colony stimulating factor 1 receptor	AK041299|Csf1r|12978|colony stimulating factor 1 receptor
mm9_v1_chr5_+_32761426_32761470	0.268233	NHLH1,2.p2	AK166168|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK166623|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform	AK168141|Ppp1cb|19046|protein phosphatase 1, catalytic subunit, beta isoform
mm9_v1_chr10_+_117066551_117066569	0.268147	NHLH1,2.p2	NM_027468|Cpm|70574|carboxypeptidase M	BC055073|Cpm|70574|carboxypeptidase M	BC088735|Cpm|70574|carboxypeptidase M	BC100404|Cpm|70574|carboxypeptidase M	BC047389|Cpm|70574|carboxypeptidase M
mm9_v1_chr17_+_56125891_56125974	0.267729	NHLH1,2.p2	AK140132|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein	BC055106|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein	NM_183178|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein	AK144257|Fsd1|240121|fibronectin type 3 and SPRY domain-containing protein
mm9_v1_chr12_+_117724251_117724308	0.267431	NHLH1,2.p2	AK220255|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	U57345|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2	BC133678|Ptprn2|19276|protein tyrosine phosphatase, receptor type, N polypeptide 2
mm9_v1_chr6_-_39675456_39675512	0.267349	NHLH1,2.p2	AK140431|Braf|109880|Braf transforming gene	NM_139294|Braf|109880|Braf transforming gene
mm9_v1_chr16_-_44333103_44333308	0.267203	NHLH1,2.p2	AK171920|Sidt1|320007|SID1 transmembrane family, member 1	AK172408|Sidt1|320007|SID1 transmembrane family, member 1	AK171897|Sidt1|320007|SID1 transmembrane family, member 1	AK047199|Sidt1|320007|SID1 transmembrane family, member 1	AK046836|Sidt1|320007|SID1 transmembrane family, member 1
mm9_v1_chr19_+_44368578_44368583	0.267195	NHLH1,2.p2	AK083085|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr2_-_132403832_132403957	0.267066	NHLH1,2.p2	AK141374|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	AK050318|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	BC006887|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	BC033408|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	AK009137|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	AK163419|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	AK030645|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	AK165952|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)	AK166454|Gpcpd1|74182|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm9_v1_chr7_-_147288242_147288252	0.265231	NHLH1,2.p2	AK163708|1810014F10Rik|69064|RIKEN cDNA 1810014F10 gene
mm9_v1_chr3_+_135102075_135102261	0.263516	NHLH1,2.p2	AK169177|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)	AK165235|Ube2d3|66105|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
mm9_v1_chr6_+_40275473_40275514	0.263461	NHLH1,2.p2	NM_023538|Agk|69923|acylglycerol kinase	AK011715|Agk|69923|acylglycerol kinase	AK020107|Agk|69923|acylglycerol kinase	BC019145|Agk|69923|acylglycerol kinase	AJ401619|Agk|69923|acylglycerol kinase	AK089433|Agk|69923|acylglycerol kinase	BC093525|Agk|69923|acylglycerol kinase	AK155346|Agk|69923|acylglycerol kinase	AK076224|Agk|69923|acylglycerol kinase
mm9_v1_chr6_-_29162226_29162288	0.263047	NHLH1,2.p2	BC053416|Impdh1|23917|inosine 5'-phosphate dehydrogenase 1	NM_011829|Impdh1|23917|inosine 5'-phosphate dehydrogenase 1
mm9_v1_chr16_+_21794392_21794464	0.262919	NHLH1,2.p2	AK004850|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene	AK005305|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene	AK031500|1300002E11Rik|100043489|RIKEN cDNA 1300002E11 gene
mm9_v1_chr7_-_31230564_31230571	0.262659	NHLH1,2.p2	L04538|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chr4_-_153674160_153674163	0.262423	NHLH1,2.p2	AK153708|Arhgef16|230972|Rho guanine nucleotide exchange factor (GEF) 16
mm9_v1_chr11_-_109472715_109472760	0.262386	NHLH1,2.p2	AK159608|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK170563|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1	AK034907|Wipi1|52639|WD repeat domain, phosphoinositide interacting 1
mm9_v1_chr5_-_125870095_125870129	0.261997	NHLH1,2.p2	BC036303|Ubc|22190|ubiquitin C	D50527|Ubc|22190|ubiquitin C	BC006680|Ubc|22190|ubiquitin C	BC008661|Ubc|22190|ubiquitin C	BC021837|Ubc|22190|ubiquitin C	BC094012|Ubc|22190|ubiquitin C	BC025894|Ubc|22190|ubiquitin C	AK010964|Ubc|22190|ubiquitin C	AK168448|Ubc|22190|ubiquitin C
mm9_v1_chr11_+_116060160_116060223	0.261849	NHLH1,2.p2	NM_027107|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	AK146257|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	AK009156|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene	BC027639|2310004N24Rik|69535|RIKEN cDNA 2310004N24 gene
mm9_v1_chr3_-_89126782_89126889	0.260681	NHLH1,2.p2	BC107002|Efna3|13638|ephrin A3	BC125003|Efna3|13638|ephrin A3	NM_010108|Efna3|13638|ephrin A3
mm9_v1_chr9_-_61762220_61762398	0.260185	NHLH1,2.p2	BC013252|Rplp1|56040|ribosomal protein, large, P1	BC092536|Rplp1|56040|ribosomal protein, large, P1	NM_018853|Rplp1|56040|ribosomal protein, large, P1	BC092088|Rplp1|56040|ribosomal protein, large, P1	BC091747|Rplp1|56040|ribosomal protein, large, P1	BC058685|Rplp1|56040|ribosomal protein, large, P1	U29402|Rplp1|56040|ribosomal protein, large, P1	AK007832|Rplp1|56040|ribosomal protein, large, P1	AK088070|Rplp1|56040|ribosomal protein, large, P1	AK169347|Rplp1|56040|ribosomal protein, large, P1	AK010656|Rplp1|56040|ribosomal protein, large, P1
mm9_v1_chr8_+_32200076_32200146	0.260169	NHLH1,2.p2	AK009781|Dusp26|66959|dual specificity phosphatase 26 (putative)	NM_025869|Dusp26|66959|dual specificity phosphatase 26 (putative)
mm9_v1_chr17_-_43803963_43804162	0.259581	NHLH1,2.p2	AK014394|Slc25a27|74011|solute carrier family 25, member 27	NM_028711|Slc25a27|74011|solute carrier family 25, member 27	BC138993|Slc25a27|74011|solute carrier family 25, member 27	BC138994|Slc25a27|74011|solute carrier family 25, member 27	AB106930|Slc25a27|74011|solute carrier family 25, member 27	AK021314|Slc25a27|74011|solute carrier family 25, member 27	AK043831|Slc25a27|74011|solute carrier family 25, member 27
mm9_v1_chr1_+_75542840_75542910	0.259278	NHLH1,2.p2	NM_009208|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	BC080271|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3	M28383|Slc4a3|20536|solute carrier family 4 (anion exchanger), member 3
mm9_v1_chr1_-_53009546_53009683	0.25903	NHLH1,2.p2	AK010944|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	AK010796|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene	NM_144953|1700019D03Rik|67080|RIKEN cDNA 1700019D03 gene
mm9_v1_chr2_-_165981138_165981162	0.258378	NHLH1,2.p2	AK081643|Sulf2|72043|sulfatase 2	BC062900|Sulf2|72043|sulfatase 2	AK133336|Sulf2|72043|sulfatase 2	NM_028072|Sulf2|72043|sulfatase 2	AK034712|Sulf2|72043|sulfatase 2
mm9_v1_chr5_+_144165615_144165640	0.25771	NHLH1,2.p2	CT010232|Kdelr2|66913|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
mm9_v1_chr12_-_92828896_92828926	0.257452	NHLH1,2.p2	BC117829|Gtf2a1|83602|general transcription factor II A, 1	BC117830|Gtf2a1|83602|general transcription factor II A, 1	AK048711|Gtf2a1|83602|general transcription factor II A, 1	NM_175335|Gtf2a1|83602|general transcription factor II A, 1
mm9_v1_chrX_+_92907016_92907016	0.257216	NHLH1,2.p2	AK134628|Zc3h12b|547176|zinc finger CCCH-type containing 12B	NM_001034907|Zc3h12b|547176|zinc finger CCCH-type containing 12B
mm9_v1_chr17_-_24769569_24769573	0.257187	NHLH1,2.p2	AK143799|Tsc2|22084|tuberous sclerosis 2	AK147908|Tsc2|22084|tuberous sclerosis 2	NM_001039363|Tsc2|22084|tuberous sclerosis 2	NM_011647|Tsc2|22084|tuberous sclerosis 2
mm9_v1_chr7_-_7251434_7251459	0.256872	NHLH1,2.p2	AK035804|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr5_-_40035831_40035890	0.25611	NHLH1,2.p2	BC009133|Hs3st1|15476|heparan sulfate (glucosamine) 3-O-sulfotransferase 1	AK087753|Hs3st1|15476|heparan sulfate (glucosamine) 3-O-sulfotransferase 1	NM_010474|Hs3st1|15476|heparan sulfate (glucosamine) 3-O-sulfotransferase 1
mm9_v1_chr11_-_53882433_53882546	0.255704	NHLH1,2.p2	AB221672|Pdlim4|30794|PDZ and LIM domain 4	BC030068|Pdlim4|30794|PDZ and LIM domain 4	Y08361|Pdlim4|30794|PDZ and LIM domain 4	AK035513|Pdlim4|30794|PDZ and LIM domain 4	NM_019417|Pdlim4|30794|PDZ and LIM domain 4
mm9_v1_chr19_+_3851856_3851913	0.254998	NHLH1,2.p2	BC056758|Chka|12660|choline kinase alpha	AB011002|Chka|12660|choline kinase alpha
mm9_v1_chr15_+_91503654_91503682	0.254862	NHLH1,2.p2	AK052591|Lrrk2|66725|leucine-rich repeat kinase 2	NM_025730|Lrrk2|66725|leucine-rich repeat kinase 2
mm9_v1_chr6_+_149357407_149357610	0.254447	NHLH1,2.p2	AK162699|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_001112796|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	NM_009753|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051379|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK220497|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK051718|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK082523|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK045975|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK038585|Bicd1|12121|bicaudal D homolog 1 (Drosophila)	AK043650|Bicd1|12121|bicaudal D homolog 1 (Drosophila)
mm9_v1_chr11_-_70501586_70501625	0.25444	NHLH1,2.p2	NM_001190376|Camta2|216874|calmodulin binding transcription activator 2	NM_001190378|Camta2|216874|calmodulin binding transcription activator 2	NM_001190379|Camta2|216874|calmodulin binding transcription activator 2	NM_178116|Camta2|216874|calmodulin binding transcription activator 2
mm9_v1_chr9_+_65524331_65524426	0.25437	NHLH1,2.p2	AK169243|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	NM_010952|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK143231|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK146074|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK160444|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168853|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AK168662|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC055442|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC083114|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	AF057298|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC005477|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene	BC110690|Oaz2-ps|18247|ornithine decarboxylase antizyme 2, pseudogene
mm9_v1_chr19_+_57527393_57527409	0.254073	NHLH1,2.p2	NM_028115|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	NM_029839|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)	AK011362|Trub1|72133|TruB pseudouridine (psi) synthase homolog 1 (E. coli)
mm9_v1_chr14_-_45839064_45839076	0.254072	NHLH1,2.p2	AK039945|Txndc16|70561|thioredoxin domain containing 16	AK046466|Txndc16|70561|thioredoxin domain containing 16	NM_172597|Txndc16|70561|thioredoxin domain containing 16	BC060101|Txndc16|70561|thioredoxin domain containing 16	AK164111|Txndc16|70561|thioredoxin domain containing 16
mm9_v1_chr12_-_114238614_114238662	0.253479	NHLH1,2.p2	BC037224|Brf1|72308|BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
mm9_v1_chr11_+_121563691_121563785	0.253443	NHLH1,2.p2	BC024445|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK034855|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK053718|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK085880|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK170549|Metrnl|210029|meteorin, glial cell differentiation regulator-like	AK170800|Metrnl|210029|meteorin, glial cell differentiation regulator-like	NM_144797|Metrnl|210029|meteorin, glial cell differentiation regulator-like	BC026646|Metrnl|210029|meteorin, glial cell differentiation regulator-like	BC019776|Metrnl|210029|meteorin, glial cell differentiation regulator-like
mm9_v1_chr5_+_3596311_3596390	0.253236	NHLH1,2.p2	AK149599|Pex1|71382|peroxisomal biogenesis factor 1
mm9_v1_chr3_+_68673489_68673528	0.253146	NHLH1,2.p2	NM_001167996|1110032F04Rik|68725|RIKEN cDNA 1110032F04 gene
mm9_v1_chr9_+_20673178_20673179	0.253145	NHLH1,2.p2	AK034516|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr3_-_108003697_108003757	0.252459	NHLH1,2.p2	AK087683|Cyb561d1|72023|cytochrome b-561 domain containing 1	BC060107|Cyb561d1|72023|cytochrome b-561 domain containing 1	BC137590|Cyb561d1|72023|cytochrome b-561 domain containing 1	NM_001081320|Cyb561d1|72023|cytochrome b-561 domain containing 1	NM_028061|Cyb561d1|72023|cytochrome b-561 domain containing 1	AK164441|Cyb561d1|72023|cytochrome b-561 domain containing 1
mm9_v1_chr13_+_115608425_115608505	0.252375	NHLH1,2.p2	NM_001113374|Mocs2|17434|molybdenum cofactor synthesis 2	NM_001113375|Mocs2|17434|molybdenum cofactor synthesis 2	NM_013826|Mocs2|17434|molybdenum cofactor synthesis 2	AK010112|Mocs2|17434|molybdenum cofactor synthesis 2	AK002719|Mocs2|17434|molybdenum cofactor synthesis 2	AK078782|Mocs2|17434|molybdenum cofactor synthesis 2	BC004631|Mocs2|17434|molybdenum cofactor synthesis 2	BC024371|Mocs2|17434|molybdenum cofactor synthesis 2	AF091872|Mocs2|17434|molybdenum cofactor synthesis 2
mm9_v1_chr13_-_53076251_53076471	0.252001	NHLH1,2.p2	BC031377|Nfil3|18030|nuclear factor, interleukin 3, regulated	AK087541|Nfil3|18030|nuclear factor, interleukin 3, regulated	NM_017373|Nfil3|18030|nuclear factor, interleukin 3, regulated
mm9_v1_chr19_+_10652212_10652359	0.251827	NHLH1,2.p2	BC065078|Cybasc3|225912|cytochrome b, ascorbate dependent 3	NM_201351|Cybasc3|225912|cytochrome b, ascorbate dependent 3
mm9_v1_chr4_-_151851624_151851635	0.251789	NHLH1,2.p2	AK143166|Kcnab2|16498|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm9_v1_chr3_-_97628441_97628543	0.251647	NHLH1,2.p2	AK031066|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_001110163|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr19_-_37281951_37281997	0.251271	NHLH1,2.p2	AB093274|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AK044639|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3	AK161513|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr11_-_43649708_43649999	0.251109	NHLH1,2.p2	BC138653|Adra1b|11548|adrenergic receptor, alpha 1b	BC138654|Adra1b|11548|adrenergic receptor, alpha 1b	AK043877|Adra1b|11548|adrenergic receptor, alpha 1b	NM_007416|Adra1b|11548|adrenergic receptor, alpha 1b	AK139448|Adra1b|11548|adrenergic receptor, alpha 1b
mm9_v1_chrX_-_7753020_7753088	0.25065	NHLH1,2.p2	AK166256|Tbc1d25|209815|TBC1 domain family, member 25	AK040932|Tbc1d25|209815|TBC1 domain family, member 25	BC060178|Tbc1d25|209815|TBC1 domain family, member 25
mm9_v1_chr7_+_120097475_120097481	0.250521	NHLH1,2.p2	AK031660|Rassf10|78748|Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	NM_175279|Rassf10|78748|Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	AK046433|Rassf10|78748|Ras association (RalGDS/AF-6) domain family (N-terminal) member 10
mm9_v1_chr15_-_93426312_93426402	0.250511	NHLH1,2.p2	AK153711|Prickle1|106042|prickle homolog 1 (Drosophila)	NM_001033217|Prickle1|106042|prickle homolog 1 (Drosophila)
mm9_v1_chr10_-_22451211_22451252	0.25043	NHLH1,2.p2	NM_011603|Tbpl1|237336|TATA box binding protein-like 1
mm9_v1_chrX_-_12338914_12338976	0.250251	NHLH1,2.p2	AK163306|Med14|26896|mediator complex subunit 14	AK084044|Med14|26896|mediator complex subunit 14
mm9_v1_chr5_+_27231234_27231317	0.249625	NHLH1,2.p2	AK051708|Dpp6|13483|dipeptidylpeptidase 6	BC085154|Dpp6|13483|dipeptidylpeptidase 6	NM_001198886|Dpp6|13483|dipeptidylpeptidase 6
mm9_v1_chr15_-_77137015_77137087	0.249525	NHLH1,2.p2	BC027263|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr11_-_58768012_58768013	0.249264	NHLH1,2.p2	BC107301|Hist3h2bb-ps|382522|histone cluster 3, H2bb, pseudogene	BC107302|Hist3h2bb-ps|382522|histone cluster 3, H2bb, pseudogene	NM_206882|Hist3h2bb-ps|382522|histone cluster 3, H2bb, pseudogene
mm9_v1_chr11_-_88725811_88725842	0.249011	NHLH1,2.p2	BC065135|Akap1|11640|A kinase (PRKA) anchor protein 1
mm9_v1_chr5_-_65928297_65928366	0.248933	NHLH1,2.p2	AK044403|1110003E01Rik|68552|RIKEN cDNA 1110003E01 gene
mm9_v1_chr9_-_117161234_117161295	0.248864	NHLH1,2.p2	AK030609|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK033005|Rbms3|207181|RNA binding motif, single stranded interacting protein	AK030478|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr9_-_79641131_79641161	0.248468	NHLH1,2.p2	AK150071|Tmem30a|69981|transmembrane protein 30A	AK170171|Tmem30a|69981|transmembrane protein 30A	AK170697|Tmem30a|69981|transmembrane protein 30A	AK159364|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr6_-_142650737_142650793	0.24842	NHLH1,2.p2	D86037|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	D86038|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	AF003531|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	U97066|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_001044720|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_011511|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_021041|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	NM_021042|Abcc9|20928|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm9_v1_chr19_-_7015923_7016010	0.247879	NHLH1,2.p2	BC048078|Gpr137|107173|G protein-coupled receptor 137	AK170308|Gpr137|107173|G protein-coupled receptor 137	NM_001177362|Gpr137|107173|G protein-coupled receptor 137
mm9_v1_chr12_-_99497498_99497616	0.246486	NHLH1,2.p2	AK077475|Galc|14420|galactosylceramidase	BC065140|Galc|14420|galactosylceramidase	BC086671|Galc|14420|galactosylceramidase	NM_008079|Galc|14420|galactosylceramidase	AK165478|Galc|14420|galactosylceramidase	D38557|Galc|14420|galactosylceramidase
mm9_v1_chr4_-_137952372_137952372	0.246384	NHLH1,2.p2	AK134570|Fam43b|625638|family with sequence similarity 43, member B	NM_001081672|Fam43b|625638|family with sequence similarity 43, member B
mm9_v1_chr2_-_35056195_35056311	0.245952	NHLH1,2.p2	BC009085|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr14_-_76154241_76154387	0.245666	NHLH1,2.p2	AK140362|Cog3|338337|component of oligomeric golgi complex 3	NM_177381|Cog3|338337|component of oligomeric golgi complex 3	BC038030|Cog3|338337|component of oligomeric golgi complex 3
mm9_v1_chr8_-_27126069_27126084	0.245109	NHLH1,2.p2	AK090346|Fnta|14272|farnesyltransferase, CAAX box, alpha	AK010744|Fnta|14272|farnesyltransferase, CAAX box, alpha	NM_008033|Fnta|14272|farnesyltransferase, CAAX box, alpha	BC012711|Fnta|14272|farnesyltransferase, CAAX box, alpha
mm9_v1_chr10_-_92773778_92773948	0.245105	NHLH1,2.p2	Z32815|Elk3|13713|ELK3, member of ETS oncogene family	L19953|Elk3|13713|ELK3, member of ETS oncogene family	BC005686|Elk3|13713|ELK3, member of ETS oncogene family	NM_013508|Elk3|13713|ELK3, member of ETS oncogene family
mm9_v1_chr2_+_127161893_127161939	0.244842	NHLH1,2.p2	AK088059|Dusp2|13537|dual specificity phosphatase 2	AK134067|Dusp2|13537|dual specificity phosphatase 2	NM_010090|Dusp2|13537|dual specificity phosphatase 2	BC048696|Dusp2|13537|dual specificity phosphatase 2	L11330|Dusp2|13537|dual specificity phosphatase 2
mm9_v1_chr17_-_36116110_36116229	0.244556	NHLH1,2.p2	AK218162|Prr3|75210|proline-rich polypeptide 3	AK016009|Prr3|75210|proline-rich polypeptide 3
mm9_v1_chr3_+_104591946_104591954	0.24455	NHLH1,2.p2	AK011599|Rhoc|11853|ras homolog gene family, member C	NM_007484|Rhoc|11853|ras homolog gene family, member C	AK152802|Rhoc|11853|ras homolog gene family, member C
mm9_v1_chr7_-_121706466_121706500	0.243357	NHLH1,2.p2	AK050453|Cyp2r1|244209|cytochrome P450, family 2, subfamily r, polypeptide 1	BC108962|Cyp2r1|244209|cytochrome P450, family 2, subfamily r, polypeptide 1	AY323818|Cyp2r1|244209|cytochrome P450, family 2, subfamily r, polypeptide 1	BC108961|Cyp2r1|244209|cytochrome P450, family 2, subfamily r, polypeptide 1	NM_177382|Cyp2r1|244209|cytochrome P450, family 2, subfamily r, polypeptide 1
mm9_v1_chr8_+_3676454_3676539	0.242639	NHLH1,2.p2	AK076212|Trappc5|66682|trafficking protein particle complex 5	NM_025701|Trappc5|66682|trafficking protein particle complex 5	AK003633|Trappc5|66682|trafficking protein particle complex 5	AK007989|Trappc5|66682|trafficking protein particle complex 5	AK171833|Trappc5|66682|trafficking protein particle complex 5	AK078451|Trappc5|66682|trafficking protein particle complex 5	BC049179|Trappc5|66682|trafficking protein particle complex 5
mm9_v1_chr5_-_121835619_121835649	0.242128	NHLH1,2.p2	NM_001163470|Trafd1|231712|TRAF type zinc finger domain containing 1	NM_172275|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr2_+_112079943_112080042	0.241735	NHLH1,2.p2	BC068131|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4	NM_207206|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4	BC080829|Lpcat4|99010|lysophosphatidylcholine acyltransferase 4
mm9_v1_chr18_-_24761954_24762029	0.241434	NHLH1,2.p2	BC055012|Slc39a6|106957|solute carrier family 39 (metal ion transporter), member 6
mm9_v1_chr2_+_177876858_177876930	0.241179	NHLH1,2.p2	BC059869|Phactr3|74189|phosphatase and actin regulator 3	AK032242|Phactr3|74189|phosphatase and actin regulator 3	AY501387|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr8_+_67471046_67471202	0.240889	NHLH1,2.p2	AK013998|Tmem192|73067|transmembrane protein 192	NM_001163747|Tmem192|73067|transmembrane protein 192	NM_028427|Tmem192|73067|transmembrane protein 192	AK168146|Tmem192|73067|transmembrane protein 192	AK046181|Tmem192|73067|transmembrane protein 192	AK132619|Tmem192|73067|transmembrane protein 192	BC020157|Tmem192|73067|transmembrane protein 192
mm9_v1_chr13_-_8870975_8870975	0.240491	NHLH1,2.p2	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chr16_-_76373266_76373271	0.240397	NHLH1,2.p2	AK156233|Nrip1|268903|nuclear receptor interacting protein 1	AK157467|Nrip1|268903|nuclear receptor interacting protein 1
mm9_v1_chr18_+_65590615_65590687	0.240261	NHLH1,2.p2	AK164626|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK041919|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK085071|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	NM_172833|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	AK045200|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110487|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1	BC110488|Malt1|240354|mucosa associated lymphoid tissue lymphoma translocation gene 1
mm9_v1_chr5_+_124423712_124423771	0.240161	NHLH1,2.p2	BC062914|Hip1r|29816|huntingtin interacting protein 1 related	AK146663|Hip1r|29816|huntingtin interacting protein 1 related	AF221713|Hip1r|29816|huntingtin interacting protein 1 related
mm9_v1_chr11_+_69810424_69810499	0.239106	NHLH1,2.p2	AK029376|Phf23|78246|PHD finger protein 23
mm9_v1_chrX_-_61530170_61530177	0.238989	NHLH1,2.p2	AK053065|Slitrk4|245446|SLIT and NTRK-like family, member 4	NM_178740|Slitrk4|245446|SLIT and NTRK-like family, member 4
mm9_v1_chr8_-_88364760_88364825	0.238985	NHLH1,2.p2	AK132242|Itfg1|71927|integrin alpha FG-GAP repeat containing 1	BC003977|Itfg1|71927|integrin alpha FG-GAP repeat containing 1	AK141948|Itfg1|71927|integrin alpha FG-GAP repeat containing 1
mm9_v1_chr7_+_66484327_66484357	0.238921	NHLH1,2.p2	
mm9_v1_chr3_+_108743001_108743040	0.238879	NHLH1,2.p2	AK085587|4921515J06Rik|66715|RIKEN cDNA 4921515J06 gene	NM_025723|4921515J06Rik|66715|RIKEN cDNA 4921515J06 gene	AK014900|4921515J06Rik|66715|RIKEN cDNA 4921515J06 gene
mm9_v1_chr11_+_79997341_79997544	0.238813	NHLH1,2.p2	AK010429|Rnf135|71956|ring finger protein 135	NM_028019|Rnf135|71956|ring finger protein 135	AK150921|Rnf135|71956|ring finger protein 135	BC132307|Rnf135|71956|ring finger protein 135	BC138303|Rnf135|71956|ring finger protein 135	BC145236|Rnf135|71956|ring finger protein 135	AK152096|Rnf135|71956|ring finger protein 135	BC096385|Rnf135|71956|ring finger protein 135	AK002781|Rnf135|71956|ring finger protein 135
mm9_v1_chrX_-_20194364_20194382	0.238723	NHLH1,2.p2	BC096047|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11	Y08702|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr2_+_25733392_25733397	0.23861	NHLH1,2.p2	AK033953|Kcnt1|227632|potassium channel, subfamily T, member 1
mm9_v1_chr8_-_67171481_67171562	0.238461	NHLH1,2.p2	AK002935|Cpe|12876|carboxypeptidase E	AK013509|Cpe|12876|carboxypeptidase E
mm9_v1_chr3_+_96049419_96049503	0.238196	NHLH1,2.p2	BC089519|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147778|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC147781|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK002725|Hist2h2aa1|15267|histone cluster 2, H2aa1	AK006728|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_013549|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC010564|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC053966|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC062255|Hist2h2aa1|15267|histone cluster 2, H2aa1	BC080809|Hist2h3c1|15077|histone cluster 2, H3c1	Z30940|Hist2h2aa1|15267|histone cluster 2, H2aa1	NM_178212|Hist2h2aa2|319192|histone cluster 2, H2aa2
mm9_v1_chr6_+_30351871_30351895	0.237799	NHLH1,2.p2	AK085116|Klhdc10|76788|kelch domain containing 10
mm9_v1_chr13_+_55546808_55546869	0.237709	NHLH1,2.p2	AK146119|Grk6|26385|G protein-coupled receptor kinase 6	AF040747|Grk6|26385|G protein-coupled receptor kinase 6	AF040748|Grk6|26385|G protein-coupled receptor kinase 6	AF040749|Grk6|26385|G protein-coupled receptor kinase 6	BC075719|Grk6|26385|G protein-coupled receptor kinase 6	Y15798|Grk6|26385|G protein-coupled receptor kinase 6	Y15799|Grk6|26385|G protein-coupled receptor kinase 6	Y15797|Grk6|26385|G protein-coupled receptor kinase 6	Y15800|Grk6|26385|G protein-coupled receptor kinase 6
mm9_v1_chrX_+_147481712_147481775	0.237426	NHLH1,2.p2	AK148151|Fgd1|14163|FYVE, RhoGEF and PH domain containing 1	BC011462|Fgd1|14163|FYVE, RhoGEF and PH domain containing 1	NM_008001|Fgd1|14163|FYVE, RhoGEF and PH domain containing 1
mm9_v1_chr4_-_148800731_148800857	0.237339	NHLH1,2.p2	AK016689|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	NM_022022|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)	AF260926|Ube4b|63958|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm9_v1_chr4_+_42929523_42929598	0.237158	NHLH1,2.p2	AK122428|N28178|230085|expressed sequence N28178
mm9_v1_chr1_+_160292470_160292548	0.235994	NHLH1,2.p2	AK164117|Astn1|11899|astrotactin 1	NM_007495|Astn1|11899|astrotactin 1	BC094666|Astn1|11899|astrotactin 1
mm9_v1_chr2_-_151566894_151566981	0.235147	NHLH1,2.p2	BC131928|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	BC131930|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1
mm9_v1_chr11_-_75993074_75993133	0.23507	NHLH1,2.p2	AK166234|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK159454|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK013422|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK010840|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK010900|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK019139|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK008026|Vps53|68299|vacuolar protein sorting 53 (yeast)	BC034371|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK149966|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK150001|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK019408|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK033495|Vps53|68299|vacuolar protein sorting 53 (yeast)	AK167310|Vps53|68299|vacuolar protein sorting 53 (yeast)	NM_026664|Vps53|68299|vacuolar protein sorting 53 (yeast)
mm9_v1_chr14_+_55082960_55083081	0.23479	NHLH1,2.p2	AK144035|Lrp10|65107|low-density lipoprotein receptor-related protein 10	NM_022993|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AK132169|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AK170325|Lrp10|65107|low-density lipoprotein receptor-related protein 10	BC052378|Lrp10|65107|low-density lipoprotein receptor-related protein 10	BC054447|Lrp10|65107|low-density lipoprotein receptor-related protein 10	AB042200|Lrp10|65107|low-density lipoprotein receptor-related protein 10
mm9_v1_chr19_-_4121544_4121574	0.234704	NHLH1,2.p2	AK146390|Aip|11632|aryl-hydrocarbon receptor-interacting protein
mm9_v1_chr7_+_69493148_69493265	0.234315	NHLH1,2.p2	NM_010882|Ndn|17984|necdin	BC147249|Ndn|17984|necdin	BC147250|Ndn|17984|necdin	AK005078|Ndn|17984|necdin	AK075729|Ndn|17984|necdin	AK076025|Ndn|17984|necdin	AK078129|Ndn|17984|necdin	AK135444|Ndn|17984|necdin	AK149086|Ndn|17984|necdin	AK075735|Ndn|17984|necdin	M80840|Ndn|17984|necdin
mm9_v1_chr5_-_31504605_31504675	0.234309	NHLH1,2.p2	BC058976|Zfp513|101023|zinc finger protein 513	NM_175311|Zfp513|101023|zinc finger protein 513
mm9_v1_chr4_+_55362895_55362941	0.234126	NHLH1,2.p2	NM_009011|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK084917|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK142280|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK150089|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160880|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK163379|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK167582|Rad23b|19359|RAD23b homolog (S. cerevisiae)	BC027747|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160890|Rad23b|19359|RAD23b homolog (S. cerevisiae)	AK160973|Rad23b|19359|RAD23b homolog (S. cerevisiae)
mm9_v1_chr3_+_35652981_35653067	0.233975	NHLH1,2.p2	AK154156|Atp11b|76295|ATPase, class VI, type 11B	AK155372|Atp11b|76295|ATPase, class VI, type 11B	NM_029570|Atp11b|76295|ATPase, class VI, type 11B	AK129248|Atp11b|76295|ATPase, class VI, type 11B
mm9_v1_chr16_+_18877336_18877523	0.233852	NHLH1,2.p2	X92590|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X75295|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)	X99712|Hira|15260|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm9_v1_chr16_+_90386629_90386722	0.232311	NHLH1,2.p2	AF167987|Hunk|26559|hormonally upregulated Neu-associated kinase	AF055919|Hunk|26559|hormonally upregulated Neu-associated kinase	NM_015755|Hunk|26559|hormonally upregulated Neu-associated kinase	AK144639|Hunk|26559|hormonally upregulated Neu-associated kinase
mm9_v1_chr12_+_77356170_77356369	0.231976	NHLH1,2.p2	NM_138745|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK129012|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK042019|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr7_+_107756604_107756765	0.231475	NHLH1,2.p2	AB232596|Rab6|19346|RAB6, member RAS oncogene family	M79313|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr12_-_112909656_112909823	0.230537	NHLH1,2.p2	AK216419|Ckb|12709|creatine kinase, brain
mm9_v1_chr4_-_70195952_70195978	0.22979	NHLH1,2.p2	AK122378|Megf9|230316|multiple EGF-like-domains 9	AK035987|Megf9|230316|multiple EGF-like-domains 9	AK039319|Megf9|230316|multiple EGF-like-domains 9	AK162891|Megf9|230316|multiple EGF-like-domains 9	NM_172694|Megf9|230316|multiple EGF-like-domains 9	AK170687|Megf9|230316|multiple EGF-like-domains 9
mm9_v1_chr17_-_33855557_33855658	0.229712	NHLH1,2.p2	BC002144|March2|224703|membrane-associated ring finger (C3HC4) 2	AK053434|March2|224703|membrane-associated ring finger (C3HC4) 2	AK079234|March2|224703|membrane-associated ring finger (C3HC4) 2	AK081495|March2|224703|membrane-associated ring finger (C3HC4) 2	AK036614|March2|224703|membrane-associated ring finger (C3HC4) 2	AK039778|March2|224703|membrane-associated ring finger (C3HC4) 2	AK040163|March2|224703|membrane-associated ring finger (C3HC4) 2	NM_145486|March2|224703|membrane-associated ring finger (C3HC4) 2
mm9_v1_chr1_+_92895317_92895369	0.229668	NHLH1,2.p2	AK041162|Lrrfip1|16978|leucine rich repeat (in FLII) interacting protein 1
mm9_v1_chr3_-_55987612_55987634	0.229629	NHLH1,2.p2	NM_030595|Nbea|26422|neurobeachin	Y18276|Nbea|26422|neurobeachin
mm9_v1_chr1_-_123224303_123224398	0.229583	NHLH1,2.p2	BC015288|Insig2|72999|insulin induced gene 2	AK152076|Insig2|72999|insulin induced gene 2	AF527631|Insig2|72999|insulin induced gene 2	AY156085|Insig2|72999|insulin induced gene 2	BC023067|Insig2|72999|insulin induced gene 2	NM_133748|Insig2|72999|insulin induced gene 2	BC024411|Insig2|72999|insulin induced gene 2	AK154543|Insig2|72999|insulin induced gene 2	AK165634|Insig2|72999|insulin induced gene 2	AK161256|Insig2|72999|insulin induced gene 2
mm9_v1_chr6_-_72566691_72566744	0.229458	NHLH1,2.p2	CT010269|Tgoln1|22134|trans-golgi network protein	AK161242|Tgoln1|22134|trans-golgi network protein	AK145212|Tgoln2|22135|trans-golgi network protein 2	BC009143|Tgoln1|22134|trans-golgi network protein	BC141218|Tgoln1|22134|trans-golgi network protein	BC145542|Tgoln1|22134|trans-golgi network protein	AK133559|Tgoln1|22134|trans-golgi network protein	D50031|Tgoln1|22134|trans-golgi network protein	D50032|Tgoln2|22135|trans-golgi network protein 2	NM_009444|Tgoln2|22135|trans-golgi network protein 2	AK041302|Tgoln1|22134|trans-golgi network protein	AK162574|Tgoln1|22134|trans-golgi network protein
mm9_v1_chr7_-_117129643_117129675	0.229244	NHLH1,2.p2	AK167021|Tmem41b|233724|transmembrane protein 41B	AK166845|Tmem41b|233724|transmembrane protein 41B
mm9_v1_chr19_-_4163292_4163339	0.228491	NHLH1,2.p2	AK090093|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	AK156361|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	BC051631|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	BC066842|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	AK014412|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr3_+_117278559_117278594	0.228452	NHLH1,2.p2	AY512657|4833424O15Rik|75769|RIKEN cDNA 4833424O15 gene
mm9_v1_chr4_+_129662284_129662511	0.22808	NHLH1,2.p2	BC056926|Bai2|230775|brain-specific angiogenesis inhibitor 2	NM_173071|Bai2|230775|brain-specific angiogenesis inhibitor 2	AK158735|Bai2|230775|brain-specific angiogenesis inhibitor 2
mm9_v1_chr2_-_112208115_112208198	0.227998	NHLH1,2.p2	AK167745|Tmem85|68032|transmembrane protein 85	BC051926|Tmem85|68032|transmembrane protein 85	AK003668|Tmem85|68032|transmembrane protein 85	AK012047|Tmem85|68032|transmembrane protein 85	AK078165|Tmem85|68032|transmembrane protein 85	NM_026519|Tmem85|68032|transmembrane protein 85
mm9_v1_chr10_+_87841876_87842156	0.227896	NHLH1,2.p2	BC060638|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK140867|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	AK173132|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	NM_001004164|Gnptab|432486|N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
mm9_v1_chr12_-_70993995_70994059	0.227794	NHLH1,2.p2	AK019468|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	BC040381|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5	AK032123|Map4k5|399510|mitogen-activated protein kinase kinase kinase kinase 5
mm9_v1_chr19_-_6015778_6015825	0.227723	NHLH1,2.p2	AK171405|Capn1|12333|calpain 1	NM_001110504|Capn1|12333|calpain 1
mm9_v1_chr17_+_73186891_73186925	0.22727	NHLH1,2.p2	AK154461|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr19_-_42506122_42506286	0.22711	NHLH1,2.p2	AJ421516|Crtac1|72832|cartilage acidic protein 1	AK032328|Crtac1|72832|cartilage acidic protein 1	AK049801|Crtac1|72832|cartilage acidic protein 1	AK149069|Crtac1|72832|cartilage acidic protein 1	NM_145123|Crtac1|72832|cartilage acidic protein 1	AK083221|Crtac1|72832|cartilage acidic protein 1	AK149020|Crtac1|72832|cartilage acidic protein 1
mm9_v1_chr18_-_80433552_80433585	0.226168	NHLH1,2.p2	BC046504|Hsbp1l1|66255|heat shock factor binding protein 1-like 1	BC151118|Hsbp1l1|66255|heat shock factor binding protein 1-like 1	BC151120|Hsbp1l1|66255|heat shock factor binding protein 1-like 1	AK007343|Hsbp1l1|66255|heat shock factor binding protein 1-like 1	AK019003|Hsbp1l1|66255|heat shock factor binding protein 1-like 1
mm9_v1_chrX_-_159326220_159326424	0.225328	NHLH1,2.p2	BC021373|Syap1|67043|synapse associated protein 1	AK147055|Syap1|67043|synapse associated protein 1	AK154843|Syap1|67043|synapse associated protein 1	AK051251|Syap1|67043|synapse associated protein 1	AK161413|Syap1|67043|synapse associated protein 1	AK008390|Syap1|67043|synapse associated protein 1	AK014893|Syap1|67043|synapse associated protein 1	AK011337|Syap1|67043|synapse associated protein 1	NM_025932|Syap1|67043|synapse associated protein 1
mm9_v1_chr2_+_30027012_30027044	0.224664	NHLH1,2.p2	AK144459|Endog|13804|endonuclease G	AB012108|Endog|13804|endonuclease G	NM_007931|Endog|13804|endonuclease G	BC030177|Endog|13804|endonuclease G
mm9_v1_chr6_+_81991613_81991706	0.224564	NHLH1,2.p2	AK145140|Fam176a|232146|family with sequence similarity 176, member A	NM_145570|Fam176a|232146|family with sequence similarity 176, member A	BC027150|Fam176a|232146|family with sequence similarity 176, member A	AK166504|Fam176a|232146|family with sequence similarity 176, member A	BC014699|Fam176a|232146|family with sequence similarity 176, member A
mm9_v1_chr11_+_5662121_5662197	0.224344	NHLH1,2.p2	AK009198|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK005556|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	AK008730|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC052911|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene	BC094935|2210015D19Rik|76508|RIKEN cDNA 2210015D19 gene
mm9_v1_chr8_+_34763918_34764151	0.223772	NHLH1,2.p2	AK040136|Gsr|14782|glutathione reductase	X76341|Gsr|14782|glutathione reductase	AK159678|Gsr|14782|glutathione reductase	AK019177|Gsr|14782|glutathione reductase	AK159218|Gsr|14782|glutathione reductase	AK151063|Gsr|14782|glutathione reductase	AK151247|Gsr|14782|glutathione reductase	AK152873|Gsr|14782|glutathione reductase	AK084328|Gsr|14782|glutathione reductase	AK167393|Gsr|14782|glutathione reductase	AK151674|Gsr|14782|glutathione reductase
mm9_v1_chr7_+_150255257_150255421	0.22264	NHLH1,2.p2	AB041597|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AB038011|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279796|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AJ279797|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_001115085|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_020285|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	NM_138631|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4	AK088052|Tssc4|56844|tumor-suppressing subchromosomal transferable fragment 4
mm9_v1_chr13_+_49516666_49516679	0.222588	NHLH1,2.p2	BC065157|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	BC062167|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	NM_199056|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm9_v1_chr15_-_57865754_57865775	0.222449	NHLH1,2.p2	AK089715|9130401M01Rik|75758|RIKEN cDNA 9130401M01 gene	AK018655|9130401M01Rik|75758|RIKEN cDNA 9130401M01 gene
mm9_v1_chr3_+_65761643_65761679	0.221994	NHLH1,2.p2	
mm9_v1_chr1_-_40847501_40847531	0.22177	NHLH1,2.p2	AK029874|Mfsd9|211798|major facilitator superfamily domain containing 9	NM_172499|Mfsd9|211798|major facilitator superfamily domain containing 9	BC057633|Mfsd9|211798|major facilitator superfamily domain containing 9	AK169911|Mfsd9|211798|major facilitator superfamily domain containing 9
mm9_v1_chr4_-_151401689_151401729	0.221655	NHLH1,2.p2	AM161454|Zbtb48|100090|zinc finger and BTB domain containing 48
mm9_v1_chr11_+_109511476_109511595	0.221441	NHLH1,2.p2	AK158562|Prkar1a|19084|protein kinase, cAMP dependent regulatory, type I, alpha
mm9_v1_chr2_-_25080099_25080153	0.22079	NHLH1,2.p2	BC005547|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr10_-_122422886_122422975	0.220744	NHLH1,2.p2	AK052706|D630033A02Rik|402753|RIKEN cDNA D630033A02 gene
mm9_v1_chr15_-_57723743_57723862	0.220315	NHLH1,2.p2	AK203076|Derl1|67819|Der1-like domain family, member 1	AK207504|Derl1|67819|Der1-like domain family, member 1	AK218964|Derl1|67819|Der1-like domain family, member 1
mm9_v1_chr7_-_104886507_104886549	0.220294	NHLH1,2.p2	AB028148|Aqp11|66333|aquaporin 11	AK040045|Aqp11|66333|aquaporin 11	BC037088|Aqp11|66333|aquaporin 11	BC068103|Aqp11|66333|aquaporin 11
mm9_v1_chr8_+_89997055_89997060	0.220187	NHLH1,2.p2	AK082312|C230036H16Rik|434335|RIKEN cDNA C230036H16 gene
mm9_v1_chr19_+_10651924_10651980	0.220087	NHLH1,2.p2	AK169729|Cybasc3|225912|cytochrome b, ascorbate dependent 3	AK172638|Cybasc3|225912|cytochrome b, ascorbate dependent 3	AK040692|Cybasc3|225912|cytochrome b, ascorbate dependent 3	AK160179|Cybasc3|225912|cytochrome b, ascorbate dependent 3	AK168841|Cybasc3|225912|cytochrome b, ascorbate dependent 3	AK170911|Cybasc3|225912|cytochrome b, ascorbate dependent 3
mm9_v1_chr3_-_40886957_40886982	0.22008	NHLH1,2.p2	NM_027558|Pgrmc2|70804|progesterone receptor membrane component 2
mm9_v1_chr17_-_17761403_17761607	0.220074	NHLH1,2.p2	BC120925|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC120926|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK029094|Lnpep|240028|leucyl/cystinyl aminopeptidase	AK036967|Lnpep|240028|leucyl/cystinyl aminopeptidase	NM_172827|Lnpep|240028|leucyl/cystinyl aminopeptidase	BC066791|Lnpep|240028|leucyl/cystinyl aminopeptidase
mm9_v1_chr15_+_58720783_58720964	0.219384	NHLH1,2.p2	AK029069|Rnf139|75841|ring finger protein 139	NM_175226|Rnf139|75841|ring finger protein 139	AK028400|Rnf139|75841|ring finger protein 139	BC052901|Rnf139|75841|ring finger protein 139	AK033506|Rnf139|75841|ring finger protein 139	AK171807|Tatdn1|69694|TatD DNase domain containing 1
mm9_v1_chr2_+_4897204_4897264	0.219178	NHLH1,2.p2	AK003750|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217397|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217398|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217399|Ucma|68527|upper zone of growth plate and cartilage matrix associated	FJ217400|Ucma|68527|upper zone of growth plate and cartilage matrix associated	BC115608|Ucma|68527|upper zone of growth plate and cartilage matrix associated	BC115609|Ucma|68527|upper zone of growth plate and cartilage matrix associated
mm9_v1_chr14_-_32390502_32390568	0.218454	NHLH1,2.p2	BC107386|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	BC107387|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	AK134212|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	NM_009937|Colq|382864|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm9_v1_chr3_-_86724773_86724792	0.21804	NHLH1,2.p2	BC056921|Dclk2|70762|doublecortin-like kinase 2
mm9_v1_chrX_+_162676903_162676907	0.217996	NHLH1,2.p2	AF254871|Gpm6b|14758|glycoprotein m6b	AF254876|Gpm6b|14758|glycoprotein m6b	AF254877|Gpm6b|14758|glycoprotein m6b
mm9_v1_chr5_-_92391581_92391802	0.217493	NHLH1,2.p2	AK015870|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF305423|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK084295|Thap6|381650|THAP domain containing 6	AK018364|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF276959|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AF071222|Rchy1|68098|ring finger and CHY zinc finger domain containing 1	AK018488|Rchy1|68098|ring finger and CHY zinc finger domain containing 1
mm9_v1_chr19_+_17030600_17030608	0.216935	NHLH1,2.p2	AK165582|Prune2|353211|prune homolog 2 (Drosophila)	AK020727|Prune2|353211|prune homolog 2 (Drosophila)	AK039241|Prune2|353211|prune homolog 2 (Drosophila)	AK165913|Prune2|353211|prune homolog 2 (Drosophila)	NM_181348|Prune2|353211|prune homolog 2 (Drosophila)
mm9_v1_chr7_-_112730004_112730048	0.216784	NHLH1,2.p2	AK144340|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	AK030748|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1	NM_009685|Apbb1|11785|amyloid beta (A4) precursor protein-binding, family B, member 1
mm9_v1_chr4_-_41261905_41261949	0.216191	NHLH1,2.p2	NM_026893|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr7_+_88716050_88716233	0.215962	NHLH1,2.p2	AK162084|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK080911|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK140311|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	BC042749|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	AK220273|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules	NM_001004185|Whamm|434204|WAS protein homolog associated with actin, golgi membranes and microtubules
mm9_v1_chr9_+_15043658_15043696	0.215764	NHLH1,2.p2	AK161045|2200002K05Rik|69137|RIKEN cDNA 2200002K05 gene
mm9_v1_chr11_+_72774709_72774812	0.215346	NHLH1,2.p2	BC026147|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	BC017639|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	U49393|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous	U49394|Atp2a3|53313|ATPase, Ca++ transporting, ubiquitous
mm9_v1_chr8_+_124900561_124900686	0.214381	NHLH1,2.p2	AK166802|Zc3h18|76014|zinc finger CCCH-type containing 18	AK031413|Zc3h18|76014|zinc finger CCCH-type containing 18	AK159881|Zc3h18|76014|zinc finger CCCH-type containing 18	BC003319|Zc3h18|76014|zinc finger CCCH-type containing 18
mm9_v1_chr9_+_110782677_110782840	0.214137	NHLH1,2.p2	AB107016|Als2cl|235633|ALS2 C-terminal like	NM_001146059|Als2cl|235633|ALS2 C-terminal like	NM_146228|Als2cl|235633|ALS2 C-terminal like	AK053076|Als2cl|235633|ALS2 C-terminal like	NM_001146060|Als2cl|235633|ALS2 C-terminal like	AK155451|Als2cl|235633|ALS2 C-terminal like
mm9_v1_chr7_-_72301384_72301483	0.213948	NHLH1,2.p2	NM_183087|Fam189a1|70638|family with sequence similarity 189, member A1
mm9_v1_chr10_-_62113965_62113997	0.213849	NHLH1,2.p2	BC090996|Ddx50|94213|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
mm9_v1_chr9_-_87625991_87626094	0.213809	NHLH1,2.p2	BC145691|Tbx18|76365|T-box18	AF306666|Tbx18|76365|T-box18	AK032660|Tbx18|76365|T-box18	NM_023814|Tbx18|76365|T-box18
mm9_v1_chr6_-_13788453_13788525	0.213721	NHLH1,2.p2	AK043090|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr15_-_66332402_66332471	0.213545	NHLH1,2.p2	AF092208|Lrrc6|54562|leucine rich repeat containing 6 (testis)	BC046277|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK077124|Lrrc6|54562|leucine rich repeat containing 6 (testis)	AK016236|Lrrc6|54562|leucine rich repeat containing 6 (testis)	NM_019457|Lrrc6|54562|leucine rich repeat containing 6 (testis)
mm9_v1_chr4_-_3501912_3501958	0.213532	NHLH1,2.p2	AK048210|Tmem68|72098|transmembrane protein 68	NM_028097|Tmem68|72098|transmembrane protein 68	BC016240|Tmem68|72098|transmembrane protein 68	AK008493|Tmem68|72098|transmembrane protein 68	AK084881|Tmem68|72098|transmembrane protein 68	AK147765|Tmem68|72098|transmembrane protein 68	AK162563|Tmem68|72098|transmembrane protein 68	AK088600|Tmem68|72098|transmembrane protein 68
mm9_v1_chr14_+_58445044_58445266	0.21343	NHLH1,2.p2	AK010282|Mrp63|67840|mitochondrial ribosomal protein 63	AK011558|Mrp63|67840|mitochondrial ribosomal protein 63	NM_026401|Mrp63|67840|mitochondrial ribosomal protein 63	AK003130|Mrp63|67840|mitochondrial ribosomal protein 63	AB049958|Mrp63|67840|mitochondrial ribosomal protein 63	BC055723|Mrp63|67840|mitochondrial ribosomal protein 63	BC049555|Mrp63|67840|mitochondrial ribosomal protein 63
mm9_v1_chr13_+_67033746_67033766	0.213303	NHLH1,2.p2	AK085857|Ptdss1|19210|phosphatidylserine synthase 1	NM_008959|Ptdss1|19210|phosphatidylserine synthase 1
mm9_v1_chr5_+_24728685_24728824	0.21252	NHLH1,2.p2	NM_144908|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	BC021504|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK088014|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK084596|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	BC011428|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	AK079811|Galnt11|231050|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm9_v1_chr12_-_59370171_59370244	0.212444	NHLH1,2.p2	BC019452|Clec14a|66864|C-type lectin domain family 14, member a	AK014681|Clec14a|66864|C-type lectin domain family 14, member a	NM_025809|Clec14a|66864|C-type lectin domain family 14, member a
mm9_v1_chr6_+_77193078_77193105	0.212201	NHLH1,2.p2	AK053364|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr19_-_61303137_61303267	0.211993	NHLH1,2.p2	EF114317|Csf2ra|12982|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	EF114318|Csf2ra|12982|colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)
mm9_v1_chr12_+_10397567_10397637	0.211706	NHLH1,2.p2	NM_023697|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	AF303831|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	BC092299|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	BC020094|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)	AK014097|Rdh14|105014|retinol dehydrogenase 14 (all-trans and 9-cis)
mm9_v1_chr17_-_25393220_25393308	0.211533	NHLH1,2.p2	BC158116|Baiap3|545192|BAI1-associated protein 3	NM_001163270|Baiap3|545192|BAI1-associated protein 3
mm9_v1_chr9_-_79641213_79641236	0.211257	NHLH1,2.p2	AK077065|Tmem30a|69981|transmembrane protein 30A	NM_133718|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr2_+_30247921_30247956	0.210986	NHLH1,2.p2	AB030189|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK002544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK044141|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK088065|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	NM_020329|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	AK053923|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1	BC026544|Dolpp1|57170|dolichyl pyrophosphate phosphatase 1
mm9_v1_chr3_-_86352170_86352368	0.210863	NHLH1,2.p2	BC046628|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK053645|Mab21l2|23937|mab-21-like 2 (C. elegans)	NM_011839|Mab21l2|23937|mab-21-like 2 (C. elegans)	BC058730|Mab21l2|23937|mab-21-like 2 (C. elegans)	AK144373|Mab21l2|23937|mab-21-like 2 (C. elegans)
mm9_v1_chr15_-_42508294_42508522	0.210838	NHLH1,2.p2	U83509|Angpt1|11600|angiopoietin 1	BC067410|Angpt1|11600|angiopoietin 1	NM_009640|Angpt1|11600|angiopoietin 1	AK172868|Angpt1|11600|angiopoietin 1	AK012027|Angpt1|11600|angiopoietin 1	AK088439|Angpt1|11600|angiopoietin 1
mm9_v1_chr1_+_66514959_66514998	0.210513	NHLH1,2.p2	AK081235|Unc80|329178|unc-80 homolog (C. elegans)	AK044008|Unc80|329178|unc-80 homolog (C. elegans)	BC116429|Unc80|329178|unc-80 homolog (C. elegans)	BC116430|Unc80|329178|unc-80 homolog (C. elegans)
mm9_v1_chr7_-_148465004_148465031	0.209881	NHLH1,2.p2	X73580|Sct|20287|secretin	AK145859|Sct|20287|secretin	AK167408|Sct|20287|secretin	NM_011328|Sct|20287|secretin	BC048484|Sct|20287|secretin
mm9_v1_chr8_+_125589362_125589405	0.209503	NHLH1,2.p2	AF512565|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr11_+_59319139_59319178	0.209373	NHLH1,2.p2	AK169756|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene	AK030920|4933439C10Rik|74476|RIKEN cDNA 4933439C10 gene
mm9_v1_chr5_-_53604536_53604567	0.209339	NHLH1,2.p2	AK037220|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)	AK030487|Sel1l3|231238|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm9_v1_chr15_+_38591604_38591751	0.209175	NHLH1,2.p2	NM_025494|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK075779|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK129007|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK151237|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK006323|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AK168914|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	BC010217|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	AB088407|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1	U13839|Atp6v1c1|66335|ATPase, H+ transporting, lysosomal V1 subunit C1
mm9_v1_chr5_-_36925021_36925045	0.208626	NHLH1,2.p2	BC042515|Tbc1d14|100855|TBC1 domain family, member 14	NM_133910|Tbc1d14|100855|TBC1 domain family, member 14
mm9_v1_chr7_-_105326687_105326735	0.208317	NHLH1,2.p2	AK164293|Capn5|12337|calpain 5	NM_007602|Capn5|12337|calpain 5	U85020|Capn5|12337|calpain 5	Y10656|Capn5|12337|calpain 5	AK170034|Capn5|12337|calpain 5
mm9_v1_chr12_+_35731926_35731945	0.208251	NHLH1,2.p2	AK164161|Snx13|217463|sorting nexin 13
mm9_v1_chr9_+_57385317_57385465	0.208168	NHLH1,2.p2	AK028365|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_001166364|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	NM_175273|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC111883|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene	BC112403|2310046O06Rik|78323|RIKEN cDNA 2310046O06 gene
mm9_v1_chr14_+_33015323_33015405	0.208166	NHLH1,2.p2	AF079557|Parg|26430|poly (ADP-ribose) glycohydrolase
mm9_v1_chr1_-_95532227_95532238	0.208147	NHLH1,2.p2	BC052913|Stk25|59041|serine/threonine kinase 25 (yeast)
mm9_v1_chr15_-_25343483_25343542	0.208014	NHLH1,2.p2	AK159486|Basp1|70350|brain abundant, membrane attached signal protein 1	AK011545|Basp1|70350|brain abundant, membrane attached signal protein 1	AK046868|Basp1|70350|brain abundant, membrane attached signal protein 1	NM_027395|Basp1|70350|brain abundant, membrane attached signal protein 1
mm9_v1_chr6_-_121423682_121423717	0.207978	NHLH1,2.p2	AK122446|Iqsec3|243621|IQ motif and Sec7 domain 3	AK147268|Iqsec3|243621|IQ motif and Sec7 domain 3	AK169437|Iqsec3|243621|IQ motif and Sec7 domain 3	NM_001033354|Iqsec3|243621|IQ motif and Sec7 domain 3
mm9_v1_chr11_-_102178941_102179000	0.207894	NHLH1,2.p2	AK158935|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chrX_-_148777014_148777028	0.207815	NHLH1,2.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr4_+_137773173_137773219	0.207574	NHLH1,2.p2	AK169740|Hp1bp3|15441|heterochromatin protein 1, binding protein 3	AK161084|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr10_-_8238569_8238650	0.207398	NHLH1,2.p2	AK086181|Ust|338362|uronyl-2-sulfotransferase	AK147850|Ust|338362|uronyl-2-sulfotransferase	NM_177387|Ust|338362|uronyl-2-sulfotransferase
mm9_v1_chr6_+_86354212_86354404	0.207358	NHLH1,2.p2	NM_001164078|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_001164079|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	NM_011585|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK144222|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	AK088486|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC023813|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC046812|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	BC027826|Tia1|21841|cytotoxic granule-associated RNA binding protein 1	U55862|Tia1|21841|cytotoxic granule-associated RNA binding protein 1
mm9_v1_chr13_+_30751950_30751985	0.207102	NHLH1,2.p2	BC057944|Dusp22|105352|dual specificity phosphatase 22	AK148708|Dusp22|105352|dual specificity phosphatase 22	AF237619|Dusp22|105352|dual specificity phosphatase 22	NM_134068|Dusp22|105352|dual specificity phosphatase 22	AK149363|Dusp22|105352|dual specificity phosphatase 22	NM_001037955|Dusp22|105352|dual specificity phosphatase 22	BC080718|Dusp22|105352|dual specificity phosphatase 22	BC108362|Dusp22|105352|dual specificity phosphatase 22
mm9_v1_chr13_-_64413805_64413881	0.206459	NHLH1,2.p2	AK006589|1110018J18Rik|66129|RIKEN cDNA 1110018J18 gene	AK168581|1110018J18Rik|66129|RIKEN cDNA 1110018J18 gene
mm9_v1_chr12_+_66018897_66018897	0.206276	NHLH1,2.p2	BC099503|Gm527|217648|predicted gene 527	NM_001025605|Gm527|217648|predicted gene 527
mm9_v1_chr7_+_57230683_57230719	0.206136	NHLH1,2.p2	AY622226|Nell1|338352|NEL-like 1 (chicken)	NM_001037906|Nell1|338352|NEL-like 1 (chicken)
mm9_v1_chr12_+_77471173_77471252	0.205874	NHLH1,2.p2	AK035036|Zbtb1|268564|zinc finger and BTB domain containing 1	AK049397|Zbtb1|268564|zinc finger and BTB domain containing 1	AY611626|Zbtb1|268564|zinc finger and BTB domain containing 1	NM_178744|Zbtb1|268564|zinc finger and BTB domain containing 1
mm9_v1_chr14_-_33015012_33015098	0.205844	NHLH1,2.p2	BC062963|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AK013976|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC132019|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC132319|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC096669|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AK146516|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC037022|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	BC069903|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	AB021122|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)	NM_016897|Timm23|53600|translocase of inner mitochondrial membrane 23 homolog (yeast)
mm9_v1_chr2_-_25080180_25080221	0.205834	NHLH1,2.p2	NM_146116|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr17_-_66426165_66426256	0.205681	NHLH1,2.p2	BC023046|Ankrd12|106585|ankyrin repeat domain 12
mm9_v1_chr9_+_122481617_122481627	0.205363	NHLH1,2.p2	AK048438|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK049978|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK079255|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK084074|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene	AK135014|9530059O14Rik|319626|RIKEN cDNA 9530059O14 gene
mm9_v1_chr16_+_94592359_94592368	0.205055	NHLH1,2.p2	BC049277|Ttc3|22129|tetratricopeptide repeat domain 3
mm9_v1_chr5_-_3803095_3803144	0.204789	NHLH1,2.p2	NM_001003909|Ankib1|70797|ankyrin repeat and IBR domain containing 1	AK014523|Ankib1|70797|ankyrin repeat and IBR domain containing 1
mm9_v1_chr4_-_154719714_154719796	0.204658	NHLH1,2.p2	AK147300|Prkcz|18762|protein kinase C, zeta
mm9_v1_chr2_+_119568028_119568087	0.204641	NHLH1,2.p2	BC027291|Itpka|228550|inositol 1,4,5-trisphosphate 3-kinase A	NM_146125|Itpka|228550|inositol 1,4,5-trisphosphate 3-kinase A
mm9_v1_chr17_+_25032050_25032109	0.204419	NHLH1,2.p2	NM_023260|Mrps34|79044|mitochondrial ribosomal protein S34	AK002285|Mrps34|79044|mitochondrial ribosomal protein S34	AK019922|Mrps34|79044|mitochondrial ribosomal protein S34	AK007337|Mrps34|79044|mitochondrial ribosomal protein S34	AK004049|Mrps34|79044|mitochondrial ribosomal protein S34	BC024336|Mrps34|79044|mitochondrial ribosomal protein S34
mm9_v1_chr9_-_114842953_114842992	0.204199	NHLH1,2.p2	AK166662|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	BC037729|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK145475|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr5_+_36100508_36100541	0.204196	NHLH1,2.p2	AK154494|Ablim2|231148|actin-binding LIM protein 2	NM_001177696|Ablim2|231148|actin-binding LIM protein 2	NM_001177697|Ablim2|231148|actin-binding LIM protein 2	NM_001177698|Ablim2|231148|actin-binding LIM protein 2	NM_001177699|Ablim2|231148|actin-binding LIM protein 2	NM_001177700|Ablim2|231148|actin-binding LIM protein 2	NM_177678|Ablim2|231148|actin-binding LIM protein 2
mm9_v1_chr19_-_43749304_43749360	0.204123	NHLH1,2.p2	AK155044|Slc25a28|246696|solute carrier family 25, member 28
mm9_v1_chr2_-_91489909_91489949	0.204066	NHLH1,2.p2	AK132515|Zfp408|381410|zinc finger protein 408	NM_001033451|Zfp408|381410|zinc finger protein 408
mm9_v1_chr15_+_80085923_80086003	0.203969	NHLH1,2.p2	AK146193|Atf4|11911|activating transcription factor 4	AK144777|Atf4|11911|activating transcription factor 4	AK155254|Atf4|11911|activating transcription factor 4	AK138657|Atf4|11911|activating transcription factor 4	AK150231|Atf4|11911|activating transcription factor 4	X61507|Atf4|11911|activating transcription factor 4	AK156298|Atf4|11911|activating transcription factor 4	M94087|Atf4|11911|activating transcription factor 4	BC031542|Atf4|11911|activating transcription factor 4	AK157839|Atf4|11911|activating transcription factor 4	AK195416|Atf4|11911|activating transcription factor 4
mm9_v1_chr10_-_127935725_127935761	0.203475	NHLH1,2.p2	BC037527|Myl6b|216459|myosin, light polypeptide 6B	NM_172259|Myl6b|216459|myosin, light polypeptide 6B
mm9_v1_chr1_-_55084269_55084299	0.203404	NHLH1,2.p2	AK012632|Sf3b1|81898|splicing factor 3b, subunit 1	BC037098|Sf3b1|81898|splicing factor 3b, subunit 1
mm9_v1_chr8_+_26712705_26712790	0.203169	NHLH1,2.p2	AK170040|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	BC064447|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	NM_001001735|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	AK172238|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm9_v1_chr16_+_91373153_91373272	0.203008	NHLH1,2.p2	AF013486|Ifnar2|15976|interferon (alpha and beta) receptor 2	Y09813|Ifnar2|15976|interferon (alpha and beta) receptor 2	AF013274|Ifnar2|15976|interferon (alpha and beta) receptor 2
mm9_v1_chr11_-_49525870_49525985	0.202815	NHLH1,2.p2	AK187687|Cnot6|104625|CCR4-NOT transcription complex, subunit 6
mm9_v1_chr6_-_91066773_91066797	0.20265	NHLH1,2.p2	AK173056|Nup210|54563|nucleoporin 210	AF113751|Nup210|54563|nucleoporin 210	AK077812|Nup210|54563|nucleoporin 210
mm9_v1_chr9_-_55785907_55785932	0.20198	NHLH1,2.p2	AK031358|Scaper|244891|S phase cyclin A-associated protein in the ER	AK049497|Scaper|244891|S phase cyclin A-associated protein in the ER	NM_001081341|Scaper|244891|S phase cyclin A-associated protein in the ER	AK048755|Scaper|244891|S phase cyclin A-associated protein in the ER
mm9_v1_chr2_+_112219335_112219462	0.201806	NHLH1,2.p2	AK036861|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	NM_024254|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK168639|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK049599|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK151464|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK010654|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK152570|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC003216|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC012402|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	BC080661|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene	AK162183|2410042D21Rik|72425|RIKEN cDNA 2410042D21 gene
mm9_v1_chr3_+_138190223_138190257	0.201793	NHLH1,2.p2	AK167097|Eif4e|13684|eukaryotic translation initiation factor 4E	M61731|Eif4e|13684|eukaryotic translation initiation factor 4E	AK082867|Eif4e|13684|eukaryotic translation initiation factor 4E	AK146757|Eif4e|13684|eukaryotic translation initiation factor 4E	BC010759|Eif4e|13684|eukaryotic translation initiation factor 4E	BC085087|Eif4e|13684|eukaryotic translation initiation factor 4E
mm9_v1_chr5_+_144090975_144090986	0.201477	NHLH1,2.p2	AK002861|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene	AK009603|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene	AK144491|0610040B10Rik|67672|RIKEN cDNA 0610040B10 gene
mm9_v1_chr4_-_12098960_12099006	0.201205	NHLH1,2.p2	BC055848|Fam92a|68099|family with sequence similarity 92, member A	AK013129|Fam92a|68099|family with sequence similarity 92, member A	AK019574|Fam92a|68099|family with sequence similarity 92, member A
mm9_v1_chr2_+_130389461_130389507	0.201083	NHLH1,2.p2	AK169837|Mrps26|99045|mitochondrial ribosomal protein S26	AK131626|Mrps26|99045|mitochondrial ribosomal protein S26	BC048517|Mrps26|99045|mitochondrial ribosomal protein S26	NM_207207|Mrps26|99045|mitochondrial ribosomal protein S26
mm9_v1_chr4_-_120689415_120689638	0.201041	NHLH1,2.p2	AK200754|Smap2|69780|stromal membrane-associated GTPase-activating protein 2
mm9_v1_chr9_-_114842932_114842948	0.200763	NHLH1,2.p2	BC138976|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	BC138980|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like	AK075845|Gpd1l|333433|glycerol-3-phosphate dehydrogenase 1-like
mm9_v1_chr9_-_41932211_41932212	0.200606	NHLH1,2.p2	AK155045|Sorl1|20660|sortilin-related receptor, LDLR class A repeats-containing
mm9_v1_chr9_+_69860349_69860394	0.200472	NHLH1,2.p2	AK165466|Gtf2a2|235459|general transcription factor II A, 2	NM_001039519|Gtf2a2|235459|general transcription factor II A, 2	AK164255|Gtf2a2|235459|general transcription factor II A, 2	BC028551|Gtf2a2|235459|general transcription factor II A, 2	AK050621|Gtf2a2|235459|general transcription factor II A, 2	AK139783|Gtf2a2|235459|general transcription factor II A, 2	AK169778|Gtf2a2|235459|general transcription factor II A, 2
mm9_v1_chr16_-_10785590_10785633	0.200248	NHLH1,2.p2	U88325|Socs1|12703|suppressor of cytokine signaling 1	AF120490|Socs1|12703|suppressor of cytokine signaling 1	AF180302|Socs1|12703|suppressor of cytokine signaling 1	BC132366|Socs1|12703|suppressor of cytokine signaling 1	BC132368|Socs1|12703|suppressor of cytokine signaling 1	AK028632|Socs1|12703|suppressor of cytokine signaling 1	NM_009896|Socs1|12703|suppressor of cytokine signaling 1
mm9_v1_chr4_+_65274679_65274844	0.199999	NHLH1,2.p2	
mm9_v1_chr14_-_56254424_56254541	0.199948	NHLH1,2.p2	AK202276|Ipo4|75751|importin 4	AF123388|Ipo4|75751|importin 4	AK018399|Ipo4|75751|importin 4	AK147086|Ipo4|75751|importin 4	AK142138|Ipo4|75751|importin 4	BC075690|Ipo4|75751|importin 4	AK171031|Ipo4|75751|importin 4	NM_024267|Ipo4|75751|importin 4	AK030490|Ipo4|75751|importin 4
mm9_v1_chr2_+_162769136_162769210	0.199738	NHLH1,2.p2	BC116639|L3mbtl|241764|l(3)mbt-like (Drosophila)	NM_001081338|L3mbtl|241764|l(3)mbt-like (Drosophila)	AK049859|L3mbtl|241764|l(3)mbt-like (Drosophila)	AJ875399|L3mbtl|241764|l(3)mbt-like (Drosophila)	AJ875400|L3mbtl|241764|l(3)mbt-like (Drosophila)	AJ875401|L3mbtl|241764|l(3)mbt-like (Drosophila)
mm9_v1_chr9_-_24307580_24307676	0.199412	NHLH1,2.p2	NM_172920|Dpy19l1|244745|dpy-19-like 1 (C. elegans)
mm9_v1_chr9_-_45763233_45763277	0.199402	NHLH1,2.p2	AK155875|Sidt2|214597|SID1 transmembrane family, member 2	AK152371|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr18_-_40379000_40379023	0.198723	NHLH1,2.p2	AK160270|Yipf5|67180|Yip1 domain family, member 5	AK153123|Yipf5|67180|Yip1 domain family, member 5	AK007671|Yipf5|67180|Yip1 domain family, member 5	AK010089|Yipf5|67180|Yip1 domain family, member 5	AK152440|Yipf5|67180|Yip1 domain family, member 5	AK167526|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr2_+_155970003_155970079	0.198413	NHLH1,2.p2	AY028425|Romo1|67067|reactive oxygen species modulator 1	NM_025946|Romo1|67067|reactive oxygen species modulator 1
mm9_v1_chr1_-_107253245_107253286	0.198236	NHLH1,2.p2	AK044638|Rnf152|320311|ring finger protein 152	NM_001160368|Rnf152|320311|ring finger protein 152	NM_178779|Rnf152|320311|ring finger protein 152
mm9_v1_chr9_+_108838660_108838726	0.198182	NHLH1,2.p2	NM_025407|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK004031|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK160337|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK002292|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK151764|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK010553|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK013128|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK168218|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	AK167911|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1	BC030064|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr7_-_69565024_69565050	0.198167	NHLH1,2.p2	BC054771|Mkrn3|22652|makorin, ring finger protein, 3	NM_011746|Mkrn3|22652|makorin, ring finger protein, 3	AK134870|Mkrn3|22652|makorin, ring finger protein, 3
mm9_v1_chr7_+_28338239_28338353	0.197901	NHLH1,2.p2	NM_175107|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	BC023369|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene
mm9_v1_chr12_+_71926429_71926675	0.19773	NHLH1,2.p2	BC053929|Frmd6|319710|FERM domain containing 6	NM_028127|Frmd6|319710|FERM domain containing 6	AK054457|Frmd6|319710|FERM domain containing 6
mm9_v1_chr9_+_43552046_43552085	0.197722	NHLH1,2.p2	AK147479|Pvrl1|58235|poliovirus receptor-related 1
mm9_v1_chr8_+_73051625_73051647	0.197697	NHLH1,2.p2	AK170993|Fkbp8|14232|FK506 binding protein 8	NM_001111066|Fkbp8|14232|FK506 binding protein 8	NM_010223|Fkbp8|14232|FK506 binding protein 8	AK152198|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr6_+_90319485_90319663	0.197595	NHLH1,2.p2	AK081005|Zxdc|80292|ZXD family zinc finger C	NM_030260|Zxdc|80292|ZXD family zinc finger C	NM_173002|Zxdc|80292|ZXD family zinc finger C	BC003332|Zxdc|80292|ZXD family zinc finger C	AK042190|Zxdc|80292|ZXD family zinc finger C	AK044529|Zxdc|80292|ZXD family zinc finger C	AK030287|Zxdc|80292|ZXD family zinc finger C	AK047538|Zxdc|80292|ZXD family zinc finger C	AK042392|Zxdc|80292|ZXD family zinc finger C	AK080307|Zxdc|80292|ZXD family zinc finger C	AK044429|Zxdc|80292|ZXD family zinc finger C	AK044948|Zxdc|80292|ZXD family zinc finger C	AK169517|Zxdc|80292|ZXD family zinc finger C	AK047079|Zxdc|80292|ZXD family zinc finger C	AK137347|Zxdc|80292|ZXD family zinc finger C	AK141613|Zxdc|80292|ZXD family zinc finger C
mm9_v1_chr5_+_136254474_136254576	0.197354	NHLH1,2.p2	AK002305|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	AK135162|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	BC023482|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	NM_008617|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	AK160553|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	AK167809|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)	M16229|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)
mm9_v1_chrX_+_130829763_130829919	0.197341	NHLH1,2.p2	BC042623|Tmem35|67564|transmembrane protein 35	NM_026239|Tmem35|67564|transmembrane protein 35	BC050880|Tmem35|67564|transmembrane protein 35
mm9_v1_chr16_+_18248964_18249010	0.196457	NHLH1,2.p2	AK017819|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	AK134368|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	NM_001080999|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	NM_001081000|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)	NM_001195205|Trmt2a|15547|TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae)
mm9_v1_chr15_+_73578771_73578842	0.196387	NHLH1,2.p2	AK143702|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK172192|Ptp4a3|19245|protein tyrosine phosphatase 4a3	AK014601|Ptp4a3|19245|protein tyrosine phosphatase 4a3
mm9_v1_chr1_-_64125352_64125397	0.196031	NHLH1,2.p2	AK086122|Klf7|93691|Kruppel-like factor 7 (ubiquitous)	AK036514|Klf7|93691|Kruppel-like factor 7 (ubiquitous)
mm9_v1_chr2_-_31701432_31701524	0.19571	NHLH1,2.p2	AK046338|Fibcd1|98970|fibrinogen C domain containing 1	AK084379|Fibcd1|98970|fibrinogen C domain containing 1	BC060634|Fibcd1|98970|fibrinogen C domain containing 1	NM_178887|Fibcd1|98970|fibrinogen C domain containing 1
mm9_v1_chr11_+_53583515_53583660	0.195503	NHLH1,2.p2	NM_001159393|Irf1|16362|interferon regulatory factor 1	NM_008390|Irf1|16362|interferon regulatory factor 1	AK152005|Irf1|16362|interferon regulatory factor 1	AK152193|Irf1|16362|interferon regulatory factor 1	AK153514|Irf1|16362|interferon regulatory factor 1	AK155983|Irf1|16362|interferon regulatory factor 1	AK152104|Irf1|16362|interferon regulatory factor 1	AK157347|Irf1|16362|interferon regulatory factor 1	M21065|Irf1|16362|interferon regulatory factor 1	AY225160|Irf1|16362|interferon regulatory factor 1
mm9_v1_chr14_-_56262087_56262223	0.195503	NHLH1,2.p2	AF269152|Tm9sf1|74140|transmembrane 9 superfamily member 1	BC017617|Tm9sf1|74140|transmembrane 9 superfamily member 1	AK160610|Tm9sf1|74140|transmembrane 9 superfamily member 1
mm9_v1_chr11_-_103815361_103815405	0.195448	NHLH1,2.p2	BC006627|Nsf|18195|N-ethylmaleimide sensitive fusion protein	NM_008740|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr17_-_35301791_35301808	0.195204	NHLH1,2.p2	BC052630|Prrc2a|53761|proline-rich coiled-coil 2A	BC053522|Prrc2a|53761|proline-rich coiled-coil 2A
mm9_v1_chr7_-_29747285_29747394	0.19517	NHLH1,2.p2	AJ289242|Actn4|60595|actinin alpha 4	AK150044|Actn4|60595|actinin alpha 4	NM_021895|Actn4|60595|actinin alpha 4	BC013616|Actn4|60595|actinin alpha 4	AK145322|Actn4|60595|actinin alpha 4
mm9_v1_chr2_-_30758745_30758791	0.195043	NHLH1,2.p2	AB035323|Ptges|64292|prostaglandin E synthase	BC024960|Ptges|64292|prostaglandin E synthase	AK172621|Ptges|64292|prostaglandin E synthase	AK010757|Ptges|64292|prostaglandin E synthase	AK033752|Ptges|64292|prostaglandin E synthase	AB041997|Ptges|64292|prostaglandin E synthase
mm9_v1_chr1_+_36748331_36748334	0.194842	NHLH1,2.p2	NM_009942|Cox5b|12859|cytochrome c oxidase, subunit Vb
mm9_v1_chr4_+_59594434_59594435	0.194559	NHLH1,2.p2	NM_024255|Hsdl2|72479|hydroxysteroid dehydrogenase like 2
mm9_v1_chr17_+_71532875_71532951	0.194511	NHLH1,2.p2	AK033662|Lpin2|64898|lipin 2
mm9_v1_chr2_+_121135107_121135172	0.194457	NHLH1,2.p2	AK079600|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr16_+_3884618_3884768	0.194411	NHLH1,2.p2	NM_029090|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	AK039910|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	BC004837|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	AK088736|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)	AK004750|Nat15|74763|N-acetyltransferase 15 (GCN5-related, putative)
mm9_v1_chr16_+_33829715_33830005	0.19435	NHLH1,2.p2	AF022110|Itgb5|16419|integrin beta 5	NM_001145884|Itgb5|16419|integrin beta 5	NM_010580|Itgb5|16419|integrin beta 5	BC058246|Itgb5|16419|integrin beta 5	AK143532|Itgb5|16419|integrin beta 5	AK140251|Itgb5|16419|integrin beta 5	BC046280|Itgb5|16419|integrin beta 5	AF043256|Itgb5|16419|integrin beta 5	AF043257|Itgb5|16419|integrin beta 5	AK087476|Itgb5|16419|integrin beta 5
mm9_v1_chr7_+_19876447_19876478	0.193703	NHLH1,2.p2	NM_001025364|Rtn2|20167|reticulon 2 (Z-band associated protein)	AK160500|Rtn2|20167|reticulon 2 (Z-band associated protein)	AF038539|Rtn2|20167|reticulon 2 (Z-band associated protein)
mm9_v1_chr12_+_109661191_109661223	0.193614	NHLH1,2.p2	BC053094|Eml1|68519|echinoderm microtubule associated protein like 1
mm9_v1_chr6_-_118147338_118147409	0.193087	NHLH1,2.p2	AK051633|Ret|19713|ret proto-oncogene	AK044686|Ret|19713|ret proto-oncogene	AK084977|Ret|19713|ret proto-oncogene
mm9_v1_chr8_+_42011568_42011702	0.193075	NHLH1,2.p2	AK081847|Pdgfrl|68797|platelet-derived growth factor receptor-like	AK132625|Pdgfrl|68797|platelet-derived growth factor receptor-like	NM_026840|Pdgfrl|68797|platelet-derived growth factor receptor-like	BC058275|Pdgfrl|68797|platelet-derived growth factor receptor-like	AK004179|Pdgfrl|68797|platelet-derived growth factor receptor-like
mm9_v1_chr8_+_125897631_125897921	0.192935	NHLH1,2.p2	BC046768|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_025804|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK045397|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK050274|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK148082|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK003180|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK088360|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_001037878|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK089964|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150232|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150918|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK151558|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK161627|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	NM_001037877|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK150942|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK151143|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK152178|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK152494|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK167837|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK168167|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	BC016130|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	BC025071|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	U94988|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK122430|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK075728|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	EU624323|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK013754|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr17_-_79754229_79754336	0.192728	NHLH1,2.p2	AK076782|Cdc42ep3|260409|CDC42 effector protein (Rho GTPase binding) 3
mm9_v1_chr1_+_97210162_97210393	0.19249	NHLH1,2.p2	BC021428|Fam174a|67698|family with sequence similarity 174, member A	AK084861|Fam174a|67698|family with sequence similarity 174, member A	NM_026321|Fam174a|67698|family with sequence similarity 174, member A	AK009797|Fam174a|67698|family with sequence similarity 174, member A	AK017318|Fam174a|67698|family with sequence similarity 174, member A	AK009892|Fam174a|67698|family with sequence similarity 174, member A	AK020633|Fam174a|67698|family with sequence similarity 174, member A	AK148807|Fam174a|67698|family with sequence similarity 174, member A	AK033948|Fam174a|67698|family with sequence similarity 174, member A	AB154249|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chr4_+_47220883_47221121	0.192027	NHLH1,2.p2	NM_009928|Col15a1|12819|collagen, type XV, alpha 1	BC052428|Col15a1|12819|collagen, type XV, alpha 1	AF011450|Col15a1|12819|collagen, type XV, alpha 1	AK134030|Col15a1|12819|collagen, type XV, alpha 1
mm9_v1_chr17_-_23700954_23701075	0.191793	NHLH1,2.p2	
mm9_v1_chr12_-_36219651_36219745	0.19179	NHLH1,2.p2	AK153678|Ahr|11622|aryl-hydrocarbon receptor	NM_013464|Ahr|11622|aryl-hydrocarbon receptor	AK155380|Ahr|11622|aryl-hydrocarbon receptor
mm9_v1_chr13_-_56855068_56855187	0.191739	NHLH1,2.p2	
mm9_v1_chr19_+_42245078_42245100	0.191419	NHLH1,2.p2	BC024801|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK159065|Zfyve27|319740|zinc finger, FYVE domain containing 27	AK170237|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr2_+_155969888_155969997	0.191123	NHLH1,2.p2	NM_001164216|Romo1|67067|reactive oxygen species modulator 1	AK008300|Romo1|67067|reactive oxygen species modulator 1	NM_001164215|Romo1|67067|reactive oxygen species modulator 1	NM_001164217|Romo1|67067|reactive oxygen species modulator 1	AK003488|Romo1|67067|reactive oxygen species modulator 1	BC028749|Romo1|67067|reactive oxygen species modulator 1
mm9_v1_chr6_-_22305957_22306034	0.190993	NHLH1,2.p2	AK081394|Fam3c|27999|family with sequence similarity 3, member C
mm9_v1_chr5_+_64550623_64550689	0.190389	NHLH1,2.p2	AK122445|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr2_-_31007762_31007777	0.190285	NHLH1,2.p2	AK085418|D330023K18Rik|320973|RIKEN cDNA D330023K18 gene	AK084630|D330023K18Rik|320973|RIKEN cDNA D330023K18 gene
mm9_v1_chr4_-_132895228_132895231	0.190195	NHLH1,2.p2	AK172431|Wdtc1|230796|WD and tetratricopeptide repeats 1	NM_199306|Wdtc1|230796|WD and tetratricopeptide repeats 1
mm9_v1_chr5_-_143084635_143084646	0.190007	NHLH1,2.p2	AY134664|Mmd2|75104|monocyte to macrophage differentiation-associated 2
mm9_v1_chrX_+_91881454_91881500	0.18999	NHLH1,2.p2	BC117825|Gspt2|14853|G1 to S phase transition 2	BC117826|Gspt2|14853|G1 to S phase transition 2
mm9_v1_chr17_-_88464582_88464624	0.18957	NHLH1,2.p2	BC117884|Fbxo11|225055|F-box protein 11	BC117885|Fbxo11|225055|F-box protein 11	BC128479|Fbxo11|225055|F-box protein 11	NM_001081034|Fbxo11|225055|F-box protein 11
mm9_v1_chr11_-_88922061_88922089	0.18957	NHLH1,2.p2	AK147841|Dgke|56077|diacylglycerol kinase, epsilon	NM_019505|Dgke|56077|diacylglycerol kinase, epsilon
mm9_v1_chr14_-_56341010_56341044	0.189456	NHLH1,2.p2	AF127656|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127657|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127658|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127659|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127660|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127661|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AF127662|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	NM_019519|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	BC012214|Rabggta|56187|Rab geranylgeranyl transferase, a subunit	AK146917|Rabggta|56187|Rab geranylgeranyl transferase, a subunit
mm9_v1_chr2_-_165151935_165152001	0.189225	NHLH1,2.p2	AK047040|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK050823|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK053574|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK032033|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	BC023954|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK038097|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK045428|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	AK129023|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_080287|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)	NM_207706|Elmo2|140579|engulfment and cell motility 2, ced-12 homolog (C. elegans)
mm9_v1_chr9_-_121186287_121186314	0.188991	NHLH1,2.p2	AK016524|Ulk4|209012|unc-51-like kinase 4 (C. elegans)	AK132731|Ulk4|209012|unc-51-like kinase 4 (C. elegans)	NM_177589|Ulk4|209012|unc-51-like kinase 4 (C. elegans)	BC065094|Ulk4|209012|unc-51-like kinase 4 (C. elegans)	AK043628|Ulk4|209012|unc-51-like kinase 4 (C. elegans)
mm9_v1_chr11_+_120645606_120645625	0.188693	NHLH1,2.p2	BC103782|Gps1|209318|G protein pathway suppressor 1
mm9_v1_chr17_+_56812647_56812679	0.188498	NHLH1,2.p2	NM_027933|Ranbp3|71810|RAN binding protein 3
mm9_v1_chrX_-_20194672_20194682	0.188403	NHLH1,2.p2	BC027265|Ndufb11|104130|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11
mm9_v1_chr17_+_25910720_25910771	0.188335	NHLH1,2.p2	AK145408|Narfl|67563|nuclear prelamin A recognition factor-like	NM_026238|Narfl|67563|nuclear prelamin A recognition factor-like	AK014038|Narfl|67563|nuclear prelamin A recognition factor-like	AK043694|Narfl|67563|nuclear prelamin A recognition factor-like	AK018548|Narfl|67563|nuclear prelamin A recognition factor-like	BC052830|Narfl|67563|nuclear prelamin A recognition factor-like	BC020468|Narfl|67563|nuclear prelamin A recognition factor-like	BC025108|Narfl|67563|nuclear prelamin A recognition factor-like
mm9_v1_chr17_+_29235731_29235767	0.188102	NHLH1,2.p2	AK194916|Cdkn1a|12575|cyclin-dependent kinase inhibitor 1A (P21)
mm9_v1_chr9_-_108469672_108469775	0.187911	NHLH1,2.p2	AF235017|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	NM_023247|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	BC027513|Ndufaf3|66706|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3
mm9_v1_chr9_-_62384846_62384857	0.187906	NHLH1,2.p2	AK087414|Coro2b|235431|coronin, actin binding protein, 2B	NM_175484|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr17_+_6079804_6079929	0.187778	NHLH1,2.p2	NM_181392|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK084443|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK003547|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK003579|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK011281|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	BC029238|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK013225|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK019011|Gtf2h5|66467|general transcription factor IIH, polypeptide 5	AK012257|Gtf2h5|66467|general transcription factor IIH, polypeptide 5
mm9_v1_chr9_+_51856364_51856507	0.187225	NHLH1,2.p2	BC053417|Rdx|19684|radixin	BC026786|Rdx|19684|radixin	AK016711|Rdx|19684|radixin	AK168449|Rdx|19684|radixin	AK146423|Rdx|19684|radixin	BC002041|Rdx|19684|radixin	X60672|Rdx|19684|radixin
mm9_v1_chr4_-_147525932_147526290	0.187169	NHLH1,2.p2	AF176526|Fbxo6|50762|F-box protein 6	AK144715|Fbxo6|50762|F-box protein 6	AK150612|Fbxo6|50762|F-box protein 6	AK165867|Fbxo6|50762|F-box protein 6	NM_001163704|Fbxo6|50762|F-box protein 6	NM_001163705|Fbxo6|50762|F-box protein 6	NM_015797|Fbxo6|50762|F-box protein 6	AK002840|Fbxo6|50762|F-box protein 6	AK170743|Fbxo6|50762|F-box protein 6	AK171483|Fbxo6|50762|F-box protein 6	NM_001163706|Fbxo6|50762|F-box protein 6	NM_001163707|Fbxo6|50762|F-box protein 6
mm9_v1_chr12_+_113960379_113960418	0.187044	NHLH1,2.p2	NM_001024602|AW555464|217882|expressed sequence AW555464	AK122236|AW555464|217882|expressed sequence AW555464
mm9_v1_chr16_-_32165509_32165642	0.187022	NHLH1,2.p2	AK084858|Lrrc33|224109|leucine rich repeat containing 33	AK088770|Lrrc33|224109|leucine rich repeat containing 33	AK128897|Lrrc33|224109|leucine rich repeat containing 33	NM_146069|Lrrc33|224109|leucine rich repeat containing 33	BC027411|Lrrc33|224109|leucine rich repeat containing 33	AK167934|Lrrc33|224109|leucine rich repeat containing 33	AK042502|Lrrc33|224109|leucine rich repeat containing 33
mm9_v1_chr10_+_76978643_76978683	0.18672	NHLH1,2.p2	AK013159|2810425M01Rik|69972|RIKEN cDNA 2810425M01 gene
mm9_v1_chr11_-_116714406_116714411	0.18663	NHLH1,2.p2	AK165670|Srsf2|20382|serine/arginine-rich splicing factor 2	NM_011358|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr10_-_115910477_115910494	0.186333	NHLH1,2.p2	AK050596|Kcnmb4|58802|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm9_v1_chr6_+_29417738_29417806	0.186188	NHLH1,2.p2	AK152929|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK007327|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	NM_025381|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK003419|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152153|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F	AK152959|Atp6v1f|66144|ATPase, H+ transporting, lysosomal V1 subunit F
mm9_v1_chr2_+_155343804_155343878	0.185862	NHLH1,2.p2	AK053877|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK086921|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK041520|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK029014|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AF216873|Acss2|60525|acyl-CoA synthetase short-chain family member 2	BC040790|Acss2|60525|acyl-CoA synthetase short-chain family member 2
mm9_v1_chr11_-_105805442_105805573	0.185395	NHLH1,2.p2	AK169711|Cyb561|13056|cytochrome b-561	AK014395|Cyb561|13056|cytochrome b-561	NM_007805|Cyb561|13056|cytochrome b-561	U16297|Cyb561|13056|cytochrome b-561	BC006732|Cyb561|13056|cytochrome b-561	AK158978|Cyb561|13056|cytochrome b-561
mm9_v1_chr10_-_126497197_126497239	0.185315	NHLH1,2.p2	AK158026|March9|216438|membrane-associated ring finger (C3HC4) 9	NM_001033262|March9|216438|membrane-associated ring finger (C3HC4) 9
mm9_v1_chr11_-_115474200_115474295	0.185174	NHLH1,2.p2	BC026745|Mif4gd|69674|MIF4G domain containing	AK010175|Mif4gd|69674|MIF4G domain containing	AK150749|Mif4gd|69674|MIF4G domain containing	BC019515|Mif4gd|69674|MIF4G domain containing	BC026740|Mif4gd|69674|MIF4G domain containing
mm9_v1_chr5_-_143667004_143667334	0.184972	NHLH1,2.p2	AK218610|Actb|11461|actin, beta	AK206771|Actb|11461|actin, beta	AK208252|Actb|11461|actin, beta	AK202772|Actb|11461|actin, beta	M12481|Actb|11461|actin, beta	X03765|Actb|11461|actin, beta	EF095208|Actb|11461|actin, beta
mm9_v1_chr6_-_86743518_86743591	0.184537	NHLH1,2.p2	AK132293|Anxa4|11746|annexin A4	AK170447|Anxa4|11746|annexin A4	AK150614|Anxa4|11746|annexin A4	AK151054|Anxa4|11746|annexin A4	BC055871|Anxa4|11746|annexin A4	AK150486|Anxa4|11746|annexin A4	AK168390|Anxa4|11746|annexin A4	U72941|Anxa4|11746|annexin A4	U95371|Anxa4|11746|annexin A4	AK151236|Anxa4|11746|annexin A4	AK168487|Anxa4|11746|annexin A4	AK167338|Anxa4|11746|annexin A4	NM_013471|Anxa4|11746|annexin A4
mm9_v1_chr14_+_58143613_58143864	0.184326	NHLH1,2.p2	AK131917|Il17d|239114|interleukin 17D	NM_145837|Il17d|239114|interleukin 17D	AF458063|Il17d|239114|interleukin 17D
mm9_v1_chr2_+_139996381_139996403	0.184273	NHLH1,2.p2	NM_027093|2310003L22Rik|69487|RIKEN cDNA 2310003L22 gene
mm9_v1_chr14_+_33669941_33669986	0.18425	NHLH1,2.p2	AK053685|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	NM_178791|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	BC107254|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	BC153828|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	BC125012|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene	AK033244|E130203B14Rik|320736|RIKEN cDNA E130203B14 gene
mm9_v1_chr10_+_79132113_79132186	0.184241	NHLH1,2.p2	BC138515|Gm16517|110012|predicted gene, Gm16517	BC138516|Gm16517|110012|predicted gene, Gm16517	AF303106|Gm16517|110012|predicted gene, Gm16517	NM_148934|Gm16517|110012|predicted gene, Gm16517
mm9_v1_chr11_-_75992950_75993004	0.183699	NHLH1,2.p2	AK049259|Vps53|68299|vacuolar protein sorting 53 (yeast)
mm9_v1_chr5_+_124990703_124991022	0.183523	NHLH1,2.p2	BC131977|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC138294|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	BC083140|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	NM_019770|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK089965|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AB025218|Tmed2|56334|transmembrane emp24 domain trafficking protein 2	AK179651|Tmed2|56334|transmembrane emp24 domain trafficking protein 2
mm9_v1_chr7_-_133942605_133942705	0.183126	NHLH1,2.p2	Y00516|Aldoa|11674|aldolase A, fructose-bisphosphate	BC043026|Aldoa|11674|aldolase A, fructose-bisphosphate	EF662060|Aldoa|11674|aldolase A, fructose-bisphosphate	AK145639|Aldoa|11674|aldolase A, fructose-bisphosphate	AK002561|Aldoa|11674|aldolase A, fructose-bisphosphate	AK162290|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066218|Aldoa|11674|aldolase A, fructose-bisphosphate	BC066801|Aldoa|11674|aldolase A, fructose-bisphosphate	BC050896|Aldoa|11674|aldolase A, fructose-bisphosphate	NM_001177307|Aldoa|11674|aldolase A, fructose-bisphosphate	BC089495|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr8_-_124431559_124431577	0.182702	NHLH1,2.p2	BC026131|Slc7a5|20539|solute carrier family 7 (cationic amino acid transporter, y+ system), member 5
mm9_v1_chr10_-_36858671_36858801	0.182701	NHLH1,2.p2	BC046601|Marcks|17118|myristoylated alanine rich protein kinase C substrate	M60474|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC002068|Marcks|17118|myristoylated alanine rich protein kinase C substrate	BC039911|Marcks|17118|myristoylated alanine rich protein kinase C substrate	NM_008538|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr13_-_114408704_114408818	0.18249	NHLH1,2.p2	AK052343|Snx18|170625|sorting nexin 18	BC137801|Snx18|170625|sorting nexin 18	BC145951|Snx18|170625|sorting nexin 18	AF408408|Snx18|170625|sorting nexin 18	AK155955|Snx18|170625|sorting nexin 18	AK143645|Snx18|170625|sorting nexin 18	BC063089|Snx18|170625|sorting nexin 18	NM_130796|Snx18|170625|sorting nexin 18
mm9_v1_chr11_-_74739106_74739232	0.182264	NHLH1,2.p2	AB235396|Srr|27364|serine racemase	BC011164|Srr|27364|serine racemase	AK031687|Srr|27364|serine racemase	AK079343|Srr|27364|serine racemase	AK080470|Srr|27364|serine racemase	AK080830|Srr|27364|serine racemase	AK017235|Srr|27364|serine racemase	AK028034|Srr|27364|serine racemase	AK170096|Srr|27364|serine racemase	AK170471|Srr|27364|serine racemase	AB232341|Srr|27364|serine racemase	AK043738|Srr|27364|serine racemase	AK043819|Srr|27364|serine racemase
mm9_v1_chr10_-_127058199_127058205	0.181833	NHLH1,2.p2	AK078273|Lrp1|16971|low density lipoprotein receptor-related protein 1	NM_008512|Lrp1|16971|low density lipoprotein receptor-related protein 1
mm9_v1_chr7_-_96487105_96487235	0.181659	NHLH1,2.p2	AK028401|Tmem135|72759|transmembrane protein 135	AY040841|Tmem135|72759|transmembrane protein 135	BC050931|Tmem135|72759|transmembrane protein 135	AK153175|Tmem135|72759|transmembrane protein 135
mm9_v1_chr15_-_27955602_27955621	0.18123	NHLH1,2.p2	NM_001081302|Trio|223435|triple functional domain (PTPRF interacting)
mm9_v1_chr9_-_57006034_57006159	0.181108	NHLH1,2.p2	BC055798|Commd4|66199|COMM domain containing 4	AK172194|Commd4|66199|COMM domain containing 4	BC033438|Commd4|66199|COMM domain containing 4	BC037364|Commd4|66199|COMM domain containing 4	AK009802|Commd4|66199|COMM domain containing 4	BC049222|Commd4|66199|COMM domain containing 4	AK004174|Commd4|66199|COMM domain containing 4	NM_025417|Commd4|66199|COMM domain containing 4
mm9_v1_chr3_-_108339375_108339439	0.18094	NHLH1,2.p2	AK139330|5330417C22Rik|229722|RIKEN cDNA 5330417C22 gene	NM_001033304|5330417C22Rik|229722|RIKEN cDNA 5330417C22 gene
mm9_v1_chr4_+_58956460_58956499	0.180925	NHLH1,2.p2	NM_001099323|Zkscan16|100041581|zinc finger with KRAB and SCAN domains 16
mm9_v1_chr7_-_133920316_133920331	0.180856	NHLH1,2.p2	AK035633|Gm9967|100038751|predicted gene 9967
mm9_v1_chr18_+_67624537_67624590	0.18074	NHLH1,2.p2	AK044163|Slmo1|225655|slowmo homolog 1 (Drosophila)	AK038905|Slmo1|225655|slowmo homolog 1 (Drosophila)	BC019561|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr6_+_83051509_83051651	0.18073	NHLH1,2.p2	NM_001081266|Ccdc142|243510|coiled-coil domain containing 142	AK038734|Ccdc142|243510|coiled-coil domain containing 142
mm9_v1_chr2_+_164704856_164704882	0.180336	NHLH1,2.p2	AK089358|Pcif1|228866|PDX1 C-terminal inhibiting factor 1	NM_146129|Pcif1|228866|PDX1 C-terminal inhibiting factor 1
mm9_v1_chr3_-_107261815_107261829	0.180183	NHLH1,2.p2	BC024837|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4	NM_145922|Kcnc4|99738|potassium voltage gated channel, Shaw-related subfamily, member 4
mm9_v1_chr5_+_3596065_3596255	0.179805	NHLH1,2.p2	BC090845|Pex1|71382|peroxisomal biogenesis factor 1	NM_027777|Pex1|71382|peroxisomal biogenesis factor 1
mm9_v1_chr15_+_25552273_25552341	0.1796	NHLH1,2.p2	AK028552|Myo10|17909|myosin X	AK089482|Myo10|17909|myosin X	NM_019472|Myo10|17909|myosin X
mm9_v1_chr6_+_83005215_83005221	0.179581	NHLH1,2.p2	AK180069|Aup1|11993|ancient ubiquitous protein 1	AK209976|Aup1|11993|ancient ubiquitous protein 1
mm9_v1_chr7_+_107520742_107520781	0.179499	NHLH1,2.p2	NM_001017985|C2cd3|277939|C2 calcium-dependent domain containing 3	AK171263|C2cd3|277939|C2 calcium-dependent domain containing 3
mm9_v1_chr6_+_97757012_97757093	0.179399	NHLH1,2.p2	AK154189|Mitf|17342|microphthalmia-associated transcription factor	AK155350|Mitf|17342|microphthalmia-associated transcription factor	AK160757|Mitf|17342|microphthalmia-associated transcription factor	NM_001113198|Mitf|17342|microphthalmia-associated transcription factor	AB009397|Mitf|17342|microphthalmia-associated transcription factor
mm9_v1_chr15_+_102300972_102301062	0.179017	NHLH1,2.p2	NM_001103165|Pcbp2|18521|poly(rC) binding protein 2	NM_001103166|Pcbp2|18521|poly(rC) binding protein 2	NM_001174073|Pcbp2|18521|poly(rC) binding protein 2	NM_011042|Pcbp2|18521|poly(rC) binding protein 2
mm9_v1_chr7_-_31230463_31230562	0.178811	NHLH1,2.p2	BC106158|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK170818|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK160871|Aplp1|11803|amyloid beta (A4) precursor-like protein 1	AK154992|Aplp1|11803|amyloid beta (A4) precursor-like protein 1
mm9_v1_chrX_+_34138224_34138276	0.178618	NHLH1,2.p2	AF042491|Pgrmc1|53328|progesterone receptor membrane component 1
mm9_v1_chr7_-_104566013_104566047	0.178364	NHLH1,2.p2	BC009165|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	NM_009381|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)	AK050300|Thrsp|21835|thyroid hormone responsive SPOT14 homolog (Rattus)
mm9_v1_chr15_-_98783909_98783984	0.17827	NHLH1,2.p2	M13445|Tuba1a|22142|tubulin, alpha 1A	NM_011653|Tuba1a|22142|tubulin, alpha 1A	AK077529|Tuba1a|22142|tubulin, alpha 1A	BC056169|Tuba1a|22142|tubulin, alpha 1A	BC083344|Tuba1a|22142|tubulin, alpha 1A	BC083343|Tuba1a|22142|tubulin, alpha 1A	BC085256|Tuba1a|22142|tubulin, alpha 1A	BC083345|Tuba1a|22142|tubulin, alpha 1A	AK145404|Tuba1a|22142|tubulin, alpha 1A	AK146983|Tuba1a|22142|tubulin, alpha 1A	AK167687|Tuba1a|22142|tubulin, alpha 1A	AK168762|Tuba1a|22142|tubulin, alpha 1A	AK169610|Tuba1a|22142|tubulin, alpha 1A	AK164335|Tuba1a|22142|tubulin, alpha 1A
mm9_v1_chr2_+_32092104_32092162	0.177911	NHLH1,2.p2	AK153984|Pomt1|99011|protein-O-mannosyltransferase 1	AK050680|Pomt1|99011|protein-O-mannosyltransferase 1	AY494857|Pomt1|99011|protein-O-mannosyltransferase 1	AK134770|Pomt1|99011|protein-O-mannosyltransferase 1	AY007238|Pomt1|99011|protein-O-mannosyltransferase 1
mm9_v1_chr7_+_128535786_128535809	0.177834	NHLH1,2.p2	NM_001081327|Hs3st2|195646|heparan sulfate (glucosamine) 3-O-sulfotransferase 2
mm9_v1_chr15_+_76307820_76307891	0.177751	NHLH1,2.p2	AK082507|Hsf1|15499|heat shock factor 1	AK089144|Hsf1|15499|heat shock factor 1	BC094064|Hsf1|15499|heat shock factor 1	BC013716|Hsf1|15499|heat shock factor 1	NM_008296|Hsf1|15499|heat shock factor 1	AK075651|Hsf1|15499|heat shock factor 1	X61753|Hsf1|15499|heat shock factor 1
mm9_v1_chr14_-_70553597_70553617	0.17774	NHLH1,2.p2	AK050238|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	NM_146055|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene	BC021475|2610301G19Rik|219158|RIKEN cDNA 2610301G19 gene
mm9_v1_chr7_+_134716853_134716888	0.177696	NHLH1,2.p2	AK079680|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	NM_026888|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)
mm9_v1_chr8_+_127387116_127387142	0.177632	NHLH1,2.p2	AJ132012|Gnpat|14712|glyceronephosphate O-acyltransferase	AK183472|Gnpat|14712|glyceronephosphate O-acyltransferase
mm9_v1_chr5_+_148242018_148242155	0.176816	NHLH1,2.p2	NM_028291|Pan3|72587|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm9_v1_chr13_-_34744511_34744555	0.176539	NHLH1,2.p2	BC037079|1300014I06Rik|66895|RIKEN cDNA 1300014I06 gene	AK005003|1300014I06Rik|66895|RIKEN cDNA 1300014I06 gene	NM_025831|1300014I06Rik|66895|RIKEN cDNA 1300014I06 gene
mm9_v1_chr19_+_25311451_25311475	0.176399	NHLH1,2.p2	AK020911|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr9_-_40153864_40153891	0.176105	NHLH1,2.p2	BC070451|Gramd1b|235283|GRAM domain containing 1B
mm9_v1_chr2_-_127347102_127347108	0.175586	NHLH1,2.p2	AF287732|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	AF287733|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_019789|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr15_+_31154176_31154177	0.175437	NHLH1,2.p2	AK152216|Dap|223453|death-associated protein
mm9_v1_chr16_-_85080107_85080121	0.175334	NHLH1,2.p2	
mm9_v1_chr18_+_21159829_21159841	0.175287	NHLH1,2.p2	AB025010|Rnf138|56515|ring finger protein 138	AB025011|Rnf138|56515|ring finger protein 138	NM_019706|Rnf138|56515|ring finger protein 138	NM_207623|Rnf138|56515|ring finger protein 138
mm9_v1_chr18_+_61715202_61715299	0.174978	NHLH1,2.p2	BC048081|Csnk1a1|93687|casein kinase 1, alpha 1	BC019740|Csnk1a1|93687|casein kinase 1, alpha 1	NM_146087|Csnk1a1|93687|casein kinase 1, alpha 1	BC025439|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr11_+_75275123_75275158	0.174151	NHLH1,2.p2	AK018628|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene	AK008813|2210403K04Rik|100042498|RIKEN cDNA 2210403K04 gene
mm9_v1_chr12_+_88019649_88019727	0.174112	NHLH1,2.p2	AB284948|Vash1|238328|vasohibin 1	AK090166|Vash1|238328|vasohibin 1	NM_177354|Vash1|238328|vasohibin 1	AK086583|Vash1|238328|vasohibin 1
mm9_v1_chr2_+_151368331_151368443	0.173897	NHLH1,2.p2	AK002777|Fkbp1a|14225|FK506 binding protein 1a	X60203|Fkbp1a|14225|FK506 binding protein 1a	BC004671|Fkbp1a|14225|FK506 binding protein 1a	AK154751|Fkbp1a|14225|FK506 binding protein 1a	AK169186|Fkbp1a|14225|FK506 binding protein 1a	AB241120|Fkbp1a|14225|FK506 binding protein 1a	AB241121|Fkbp1a|14225|FK506 binding protein 1a	AB241122|Fkbp1a|14225|FK506 binding protein 1a	AF483488|Fkbp1a|14225|FK506 binding protein 1a	AF483489|Fkbp1a|14225|FK506 binding protein 1a
mm9_v1_chr3_-_87734096_87734116	0.173516	NHLH1,2.p2	NM_153562|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1
mm9_v1_chr7_+_25039812_25039838	0.173503	NHLH1,2.p2	AK032355|Zfp108|54678|zinc finger protein 108	NM_018791|Zfp108|54678|zinc finger protein 108	AF167315|Zfp108|54678|zinc finger protein 108
mm9_v1_chr7_-_147973751_147973752	0.173338	NHLH1,2.p2	AK016694|Syce1|74075|synaptonemal complex central element protein 1	NM_001143765|Syce1|74075|synaptonemal complex central element protein 1
mm9_v1_chr15_-_79518160_79518352	0.173319	NHLH1,2.p2	AK004913|Josd1|74158|Josephin domain containing 1	NM_028792|Josd1|74158|Josephin domain containing 1	AK154799|Josd1|74158|Josephin domain containing 1
mm9_v1_chr10_-_124826429_124826542	0.173242	NHLH1,2.p2	
mm9_v1_chr18_+_45428413_45428658	0.172926	NHLH1,2.p2	AK076494|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	AK033158|Kcnn2|140492|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2
mm9_v1_chr12_+_110798661_110798666	0.172725	NHLH1,2.p2	AK019916|Meg3|17263|maternally expressed 3
mm9_v1_chr3_+_88520743_88520881	0.172614	NHLH1,2.p2	NM_001163310|Rit1|19769|Ras-like without CAAX 1	NM_009069|Rit1|19769|Ras-like without CAAX 1	AK014126|Rit1|19769|Ras-like without CAAX 1	AK164196|Rit1|19769|Ras-like without CAAX 1	AK005357|Rit1|19769|Ras-like without CAAX 1	AK168254|Rit1|19769|Ras-like without CAAX 1	BC012694|Rit1|19769|Ras-like without CAAX 1	AK018785|Rit1|19769|Ras-like without CAAX 1	U71205|Rit1|19769|Ras-like without CAAX 1
mm9_v1_chr5_-_34125322_34125413	0.171988	NHLH1,2.p2	BC023862|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AF061026|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061690|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	NM_019694|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC046326|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC055865|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AB041582|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	BC061115|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1	AK133849|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr10_-_122513447_122513560	0.171986	NHLH1,2.p2	AK122425|Mon2|67074|MON2 homolog (yeast)	NM_001163024|Mon2|67074|MON2 homolog (yeast)	NM_001163025|Mon2|67074|MON2 homolog (yeast)	NM_153395|Mon2|67074|MON2 homolog (yeast)
mm9_v1_chr6_-_83004374_83004564	0.171755	NHLH1,2.p2	AK159188|Htra2|64704|HtrA serine peptidase 2	BC033276|Htra2|64704|HtrA serine peptidase 2	AF164513|Htra2|64704|HtrA serine peptidase 2	AF175324|Htra2|64704|HtrA serine peptidase 2	AK146338|Htra2|64704|HtrA serine peptidase 2	BC049880|Htra2|64704|HtrA serine peptidase 2	NM_019752|Htra2|64704|HtrA serine peptidase 2
mm9_v1_chr3_-_8666930_8666974	0.171404	NHLH1,2.p2	AB041590|Hey1|15213|hairy/enhancer-of-split related with YRPW motif 1
mm9_v1_chr8_+_108379461_108379549	0.171309	NHLH1,2.p2	BC003949|Thap11|59016|THAP domain containing 11
mm9_v1_chr15_+_98538624_98538661	0.170809	NHLH1,2.p2	AK077174|Ccdc65|105833|coiled-coil domain containing 65	BC048073|Ccdc65|105833|coiled-coil domain containing 65	AF454432|Ccdc65|105833|coiled-coil domain containing 65	NM_153518|Ccdc65|105833|coiled-coil domain containing 65	BC056947|Ccdc65|105833|coiled-coil domain containing 65	BC060155|Ccdc65|105833|coiled-coil domain containing 65
mm9_v1_chr19_+_21727795_21727859	0.170757	NHLH1,2.p2	NM_146096|Fam108b|226016|family with sequence similarity 108, member B	AK017641|Fam108b|226016|family with sequence similarity 108, member B
mm9_v1_chr12_+_76409299_76409440	0.170584	NHLH1,2.p2	AK166409|Rhoj|80837|ras homolog gene family, member J	AK166480|Rhoj|80837|ras homolog gene family, member J	NM_023275|Rhoj|80837|ras homolog gene family, member J	BC054464|Rhoj|80837|ras homolog gene family, member J	BC043719|Rhoj|80837|ras homolog gene family, member J	AK159385|Rhoj|80837|ras homolog gene family, member J	AB060651|Rhoj|80837|ras homolog gene family, member J	AK042583|Rhoj|80837|ras homolog gene family, member J	AK003482|Rhoj|80837|ras homolog gene family, member J	AK003490|Rhoj|80837|ras homolog gene family, member J	AK156619|Rhoj|80837|ras homolog gene family, member J	AK171636|Rhoj|80837|ras homolog gene family, member J	AK157518|Rhoj|80837|ras homolog gene family, member J	BC024626|Rhoj|80837|ras homolog gene family, member J	BC060193|Rhoj|80837|ras homolog gene family, member J	AK185821|Rhoj|80837|ras homolog gene family, member J	AF309564|Rhoj|80837|ras homolog gene family, member J
mm9_v1_chr19_+_54119671_54119753	0.170555	NHLH1,2.p2	NM_007417|Adra2a|11551|adrenergic receptor, alpha 2a	AK141573|Adra2a|11551|adrenergic receptor, alpha 2a	AK140461|Adra2a|11551|adrenergic receptor, alpha 2a	AK046802|Adra2a|11551|adrenergic receptor, alpha 2a
mm9_v1_chr2_+_181099632_181099635	0.170359	NHLH1,2.p2	AK041491|Zgpat|229007|zinc finger, CCCH-type with G patch domain	NM_144894|Zgpat|229007|zinc finger, CCCH-type with G patch domain
mm9_v1_chr1_-_58480910_58480931	0.170257	NHLH1,2.p2	NM_001042634|Clk1|12747|CDC-like kinase 1
mm9_v1_chr18_+_82754586_82754645	0.170139	NHLH1,2.p2	AK194642|Mbp|17196|myelin basic protein
mm9_v1_chr3_-_116415169_116415197	0.169847	NHLH1,2.p2	BC024110|Slc35a3|229782|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	AK082040|Slc35a3|229782|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	AK049484|Slc35a3|229782|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	NM_144902|Slc35a3|229782|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm9_v1_chr7_-_31148021_31148160	0.169553	NHLH1,2.p2	BC066999|Lrfn3|233067|leucine rich repeat and fibronectin type III domain containing 3
mm9_v1_chr16_-_44746467_44746477	0.169428	NHLH1,2.p2	AK010979|Gtpbp8|66067|GTP-binding protein 8 (putative)	BC107216|Gtpbp8|66067|GTP-binding protein 8 (putative)	BC107217|Gtpbp8|66067|GTP-binding protein 8 (putative)	AK078242|Gtpbp8|66067|GTP-binding protein 8 (putative)	NM_001159329|Gtpbp8|66067|GTP-binding protein 8 (putative)	NM_025332|Gtpbp8|66067|GTP-binding protein 8 (putative)
mm9_v1_chr14_+_121434765_121434823	0.169346	NHLH1,2.p2	AK134958|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	NM_134082|Farp1|223254|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm9_v1_chr8_-_27125912_27125996	0.169172	NHLH1,2.p2	AK183567|Fnta|14272|farnesyltransferase, CAAX box, alpha
mm9_v1_chr4_-_45543623_45543714	0.168985	NHLH1,2.p2	NM_001033306|Shb|230126|src homology 2 domain-containing transforming protein B
mm9_v1_chr8_+_75247189_75247206	0.168707	NHLH1,2.p2	AK165592|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC021160|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC129859|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	L38622|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC096367|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	AF038848|Sin3b|20467|transcriptional regulator, SIN3B (yeast)	BC020049|Sin3b|20467|transcriptional regulator, SIN3B (yeast)
mm9_v1_chr17_+_33661120_33661188	0.168511	NHLH1,2.p2	BC082773|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK042525|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK046333|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK034843|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK034565|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	AK076334|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	NM_172619|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	BC056427|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	BC100558|Adamts10|224697|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
mm9_v1_chr1_+_34062720_34062743	0.168493	NHLH1,2.p2	AK039885|Dst|13518|dystonin
mm9_v1_chr5_-_130478687_130478765	0.168467	NHLH1,2.p2	AK159564|Gusb|110006|glucuronidase, beta	AK041058|Gusb|110006|glucuronidase, beta	AK150048|Gusb|110006|glucuronidase, beta	AK151802|Gusb|110006|glucuronidase, beta	AK152206|Gusb|110006|glucuronidase, beta	AK159163|Gusb|110006|glucuronidase, beta	AK159526|Gusb|110006|glucuronidase, beta	AK159804|Gusb|110006|glucuronidase, beta	AK162436|Gusb|110006|glucuronidase, beta	J03047|Gusb|110006|glucuronidase, beta	M19279|Gusb|110006|glucuronidase, beta	M28540|Gusb|110006|glucuronidase, beta	M28541|Gusb|110006|glucuronidase, beta	M63836|Gusb|110006|glucuronidase, beta	NM_010368|Gusb|110006|glucuronidase, beta	BC071226|Gusb|110006|glucuronidase, beta	AK149814|Gusb|110006|glucuronidase, beta	AK076109|Gusb|110006|glucuronidase, beta	BC004616|Gusb|110006|glucuronidase, beta	AK002832|Gusb|110006|glucuronidase, beta	AK136519|Gusb|110006|glucuronidase, beta
mm9_v1_chr8_-_97666364_97666472	0.168029	NHLH1,2.p2	AK166482|Kifc3|16582|kinesin family member C3	BC070429|Kifc3|16582|kinesin family member C3	NM_001145831|Kifc3|16582|kinesin family member C3	NM_010631|Kifc3|16582|kinesin family member C3	D49546|Kifc3|16582|kinesin family member C3
mm9_v1_chr17_-_26338254_26338295	0.167911	NHLH1,2.p2	BC002032|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma	NM_008113|Arhgdig|14570|Rho GDP dissociation inhibitor (GDI) gamma
mm9_v1_chr9_-_22272737_22272810	0.167684	NHLH1,2.p2	BC115549|rp9|55934|retinitis pigmentosa 9 (human)	BC115550|rp9|55934|retinitis pigmentosa 9 (human)	D78255|rp9|55934|retinitis pigmentosa 9 (human)	AK146136|rp9|55934|retinitis pigmentosa 9 (human)	AK168391|rp9|55934|retinitis pigmentosa 9 (human)	NM_018739|rp9|55934|retinitis pigmentosa 9 (human)	AK147912|rp9|55934|retinitis pigmentosa 9 (human)
mm9_v1_chr8_-_108224931_108224989	0.167566	NHLH1,2.p2	AK171345|Acd|497652|adrenocortical dysplasia	AK160599|Acd|497652|adrenocortical dysplasia	BC138694|Acd|497652|adrenocortical dysplasia	BC138695|Acd|497652|adrenocortical dysplasia	BC145384|Acd|497652|adrenocortical dysplasia	AK032683|Acd|497652|adrenocortical dysplasia	AK145959|Acd|497652|adrenocortical dysplasia	AK171458|Acd|497652|adrenocortical dysplasia	AK052768|Acd|497652|adrenocortical dysplasia
mm9_v1_chr15_-_82184631_82184726	0.167326	NHLH1,2.p2	AK002749|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK010988|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	AK012328|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	BC048451|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	NM_025987|Ndufa6|67130|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm9_v1_chr5_+_115791215_115791352	0.167202	NHLH1,2.p2	AK007514|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	NM_026933|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	U61156|Triap1|69076|TP53 regulated inhibitor of apoptosis 1	BC030325|Triap1|69076|TP53 regulated inhibitor of apoptosis 1
mm9_v1_chr2_+_164286416_164286607	0.167137	NHLH1,2.p2	AK007882|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	NM_025575|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK139605|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK011753|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK003071|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK013220|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK032073|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK009684|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK075770|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK005510|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK148305|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	AK005249|Sys1|66460|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm9_v1_chr5_+_123465326_123465341	0.166917	NHLH1,2.p2	AK085755|Orai1|109305|ORAI calcium release-activated calcium modulator 1
mm9_v1_chr10_-_30338152_30338232	0.166879	NHLH1,2.p2	AK027974|Hint3|66847|histidine triad nucleotide binding protein 3	BC025065|Hint3|66847|histidine triad nucleotide binding protein 3	NM_025798|Hint3|66847|histidine triad nucleotide binding protein 3	AY040768|Hint3|66847|histidine triad nucleotide binding protein 3	AK007758|Hint3|66847|histidine triad nucleotide binding protein 3
mm9_v1_chr8_+_125914690_125914738	0.166713	NHLH1,2.p2	AK177952|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK179328|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)	AK186829|Tcf25|66855|transcription factor 25 (basic helix-loop-helix)
mm9_v1_chr3_+_33699121_33699184	0.166653	NHLH1,2.p2	AK044266|Ttc14|67120|tetratricopeptide repeat domain 14	AK041095|Ttc14|67120|tetratricopeptide repeat domain 14	AK173315|Ttc14|67120|tetratricopeptide repeat domain 14	AK035570|Ttc14|67120|tetratricopeptide repeat domain 14	BC024847|Ttc14|67120|tetratricopeptide repeat domain 14	BC138212|Ttc14|67120|tetratricopeptide repeat domain 14	BC145944|Ttc14|67120|tetratricopeptide repeat domain 14	AK012246|Ttc14|67120|tetratricopeptide repeat domain 14	AK015308|Ttc14|67120|tetratricopeptide repeat domain 14	AK016619|Ttc14|67120|tetratricopeptide repeat domain 14
mm9_v1_chr11_-_69418965_69419018	0.166564	NHLH1,2.p2	X16645|Atp1b2|11932|ATPase, Na+/K+ transporting, beta 2 polypeptide
mm9_v1_chr18_-_6241456_6241485	0.166398	NHLH1,2.p2	BC013248|Kif5b|16573|kinesin family member 5B
mm9_v1_chr7_+_28964486_28964515	0.16606	NHLH1,2.p2	BC019545|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_001037957|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	NM_010092|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	Y18280|Dyrk1b|13549|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm9_v1_chr2_+_178149238_178149258	0.165387	NHLH1,2.p2	AK155442|9030418K01Rik|71532|RIKEN cDNA 9030418K01 gene	NM_001081289|9030418K01Rik|71532|RIKEN cDNA 9030418K01 gene
mm9_v1_chr8_+_26830480_26830683	0.165226	NHLH1,2.p2	NM_028000|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC023111|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK144593|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC089556|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC062173|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	AK009455|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC099489|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr1_+_173259275_173259328	0.164936	NHLH1,2.p2	NM_001128609|Dedd|21945|death effector domain-containing	NM_011615|Dedd|21945|death effector domain-containing	AK157609|Dedd|21945|death effector domain-containing
mm9_v1_chr13_-_48966134_48966155	0.164008	NHLH1,2.p2	AB221591|Phf2|18676|PHD finger protein 2
mm9_v1_chr11_-_98636689_98636697	0.163837	NHLH1,2.p2	AK154931|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1	AK155597|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr7_-_28338185_28338214	0.163715	NHLH1,2.p2	BC076586|Pld3|18807|phospholipase D family, member 3
mm9_v1_chr16_+_8830175_8830249	0.163353	NHLH1,2.p2	AK007485|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	NM_001081400|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116778|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene	BC116780|1810013L24Rik|69053|RIKEN cDNA 1810013L24 gene
mm9_v1_chr6_+_72548468_72548554	0.163265	NHLH1,2.p2	AK144115|Retsat|67442|retinol saturase (all trans retinol 13,14 reductase)
mm9_v1_chr5_-_144090853_144090920	0.163245	NHLH1,2.p2	AK156167|Zdhhc4|72881|zinc finger, DHHC domain containing 4	BC019523|Zdhhc4|72881|zinc finger, DHHC domain containing 4	AK013609|Zdhhc4|72881|zinc finger, DHHC domain containing 4	NM_028379|Zdhhc4|72881|zinc finger, DHHC domain containing 4
mm9_v1_chr9_-_64101138_64101232	0.163176	NHLH1,2.p2	L02526|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC054754|Map2k1|26395|mitogen-activated protein kinase kinase 1	BC051137|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr10_+_80720251_80720289	0.162898	NHLH1,2.p2	AK079816|Matk|17179|megakaryocyte-associated tyrosine kinase	U05210|Matk|17179|megakaryocyte-associated tyrosine kinase	L27738|Matk|17179|megakaryocyte-associated tyrosine kinase	NM_010768|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr10_-_13272820_13272870	0.162522	NHLH1,2.p2	BC033415|Pex3|56535|peroxisomal biogenesis factor 3	AK075820|Pex3|56535|peroxisomal biogenesis factor 3	AF152996|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr3_-_57105840_57105943	0.162294	NHLH1,2.p2	BC083073|Tm4sf1|17112|transmembrane 4 superfamily member 1	NM_008536|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK134603|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr18_+_82754829_82754843	0.16228	NHLH1,2.p2	AK193989|Mbp|17196|myelin basic protein	AK198113|Mbp|17196|myelin basic protein	AK200233|Mbp|17196|myelin basic protein	AK200632|Mbp|17196|myelin basic protein	AK201435|Mbp|17196|myelin basic protein	AK201834|Mbp|17196|myelin basic protein	AK202354|Mbp|17196|myelin basic protein	AK209511|Mbp|17196|myelin basic protein
mm9_v1_chr4_-_144836658_144836801	0.162222	NHLH1,2.p2	X76401|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK170464|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	M60469|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	M59378|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	BC141405|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK155385|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK004752|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK004844|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK085490|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK140332|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK153301|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	NM_011610|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b	AK156996|Tnfrsf1b|21938|tumor necrosis factor receptor superfamily, member 1b
mm9_v1_chr14_-_55734213_55734388	0.161907	NHLH1,2.p2	AY350744|Jph4|319984|junctophilin 4	BC052049|Jph4|319984|junctophilin 4	AK031092|Jph4|319984|junctophilin 4	NM_001003829|Jph4|319984|junctophilin 4	AK048607|Jph4|319984|junctophilin 4	AK148135|Jph4|319984|junctophilin 4
mm9_v1_chr19_+_5038825_5038950	0.161604	NHLH1,2.p2	AK158899|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	NM_175383|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK050347|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	BC069927|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1	AK083857|B3gnt1|108902|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm9_v1_chr12_+_36883788_36883809	0.161284	NHLH1,2.p2	AK164434|Ankmy2|217473|ankyrin repeat and MYND domain containing 2
mm9_v1_chrX_+_130939318_130939458	0.161256	NHLH1,2.p2	AK038488|Drp2|13497|dystrophin related protein 2	NM_010078|Drp2|13497|dystrophin related protein 2	AK081426|Drp2|13497|dystrophin related protein 2	AK034383|Drp2|13497|dystrophin related protein 2	BC125345|Drp2|13497|dystrophin related protein 2	BC125347|Drp2|13497|dystrophin related protein 2
mm9_v1_chr15_-_93166789_93166977	0.161111	NHLH1,2.p2	AK184096|Yaf2|67057|YY1 associated factor 2	AK012787|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr2_+_160557441_160557517	0.161039	NHLH1,2.p2	AF027185|Plcg1|18803|phospholipase C, gamma 1
mm9_v1_chr6_-_92164804_92164868	0.160995	NHLH1,2.p2	BC049106|Zfyve20|78287|zinc finger, FYVE domain containing 20	NM_030081|Zfyve20|78287|zinc finger, FYVE domain containing 20	AK019909|Zfyve20|78287|zinc finger, FYVE domain containing 20	BC017622|Zfyve20|78287|zinc finger, FYVE domain containing 20
mm9_v1_chr4_+_15193231_15193387	0.160685	NHLH1,2.p2	AK170682|Tmem64|100201|transmembrane protein 64	AK035894|Tmem64|100201|transmembrane protein 64	AK169861|Tmem64|100201|transmembrane protein 64
mm9_v1_chr15_-_76039510_76039594	0.16	NHLH1,2.p2	AK017743|Plec|18810|plectin	AF188017|Plec|18810|plectin	AF188018|Plec|18810|plectin	AY480035|Plec|18810|plectin	NM_201386|Plec|18810|plectin
mm9_v1_chr7_-_4636141_4636274	0.159793	NHLH1,2.p2	AF338351|Hspbp1|66245|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm9_v1_chr8_+_109580775_109580831	0.159463	NHLH1,2.p2	AK003739|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	NM_001164472|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	NM_025391|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	BC003972|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	AK006057|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)	AK014290|Nip7|66164|nuclear import 7 homolog (S. cerevisiae)
mm9_v1_chr1_-_185857753_185857876	0.159332	NHLH1,2.p2	NM_028516|1700056E22Rik|73363|RIKEN cDNA 1700056E22 gene
mm9_v1_chr17_+_37006518_37006546	0.159299	NHLH1,2.p2	NM_011280|Trim10|19824|tripartite motif-containing 10	AK011082|Trim10|19824|tripartite motif-containing 10	AF134811|Trim10|19824|tripartite motif-containing 10	BC051632|Trim10|19824|tripartite motif-containing 10	AF220121|Trim10|19824|tripartite motif-containing 10
mm9_v1_chr17_-_34999068_34999191	0.158638	NHLH1,2.p2	AK149531|Cfb|14962|complement factor B	BC005451|Cfb|14962|complement factor B	AK098094|Cfb|14962|complement factor B	AK149573|Cfb|14962|complement factor B	M57890|Cfb|14962|complement factor B	AK151246|Cfb|14962|complement factor B
mm9_v1_chr17_+_34341467_34341526	0.158563	NHLH1,2.p2	AK145234|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151657|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK161091|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC051257|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK020022|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK079667|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151376|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK151483|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK153287|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	BC005578|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr10_-_126959446_126959510	0.158115	NHLH1,2.p2	AK037339|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	BC004825|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK051207|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	NM_028230|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK162421|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)
mm9_v1_chr4_+_8617550_8617602	0.157923	NHLH1,2.p2	AK171857|Chd7|320790|chromodomain helicase DNA binding protein 7	AK172025|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr8_+_106694341_106694482	0.157772	NHLH1,2.p2	BC030426|Bean1|65115|brain expressed, associated with Nedd4, 1	AK134633|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141922|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141924|Bean1|65115|brain expressed, associated with Nedd4, 1	NM_001141925|Bean1|65115|brain expressed, associated with Nedd4, 1	BC138184|Bean1|65115|brain expressed, associated with Nedd4, 1
mm9_v1_chr10_-_90545046_90545173	0.157565	NHLH1,2.p2	BC131683|Apaf1|11783|apoptotic peptidase activating factor 1	BC131684|Apaf1|11783|apoptotic peptidase activating factor 1	AK035569|Apaf1|11783|apoptotic peptidase activating factor 1
mm9_v1_chr9_-_115152128_115152185	0.157113	NHLH1,2.p2	
mm9_v1_chr2_+_143741050_143741074	0.157055	NHLH1,2.p2	NM_019771|Dstn|56431|destrin
mm9_v1_chr3_-_84283349_84283412	0.156835	NHLH1,2.p2	BC137632|Fhdc1|229474|FH2 domain containing 1	AK173244|Fhdc1|229474|FH2 domain containing 1
mm9_v1_chr4_+_118808330_118808432	0.15674	NHLH1,2.p2	S77924|Slc2a1|20525|solute carrier family 2 (facilitated glucose transporter), member 1
mm9_v1_chr19_+_21727662_21727704	0.156728	NHLH1,2.p2	AK050879|Fam108b|226016|family with sequence similarity 108, member B
mm9_v1_chr8_+_87583954_87584056	0.156445	NHLH1,2.p2	AK156709|Fbxw9|68628|F-box and WD-40 domain protein 9	NM_026791|Fbxw9|68628|F-box and WD-40 domain protein 9	BC043658|Fbxw9|68628|F-box and WD-40 domain protein 9
mm9_v1_chr1_-_58480831_58480905	0.156093	NHLH1,2.p2	X57186|Clk1|12747|CDC-like kinase 1	BC145905|Clk1|12747|CDC-like kinase 1	BC145911|Clk1|12747|CDC-like kinase 1	L29221|Clk1|12747|CDC-like kinase 1	M38381|Clk1|12747|CDC-like kinase 1	U21209|Clk1|12747|CDC-like kinase 1	AK031218|Clk1|12747|CDC-like kinase 1	AK076199|Clk1|12747|CDC-like kinase 1	AK135765|Clk1|12747|CDC-like kinase 1	BC062887|Clk1|12747|CDC-like kinase 1
mm9_v1_chr6_-_94233855_94233910	0.15549	NHLH1,2.p2	AK046635|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC095943|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001029850|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_010367|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK147358|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr9_-_62384483_62384602	0.154993	NHLH1,2.p2	BC062649|Coro2b|235431|coronin, actin binding protein, 2B
mm9_v1_chr2_+_155343787_155343801	0.15448	NHLH1,2.p2	AK029262|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK003738|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK028586|Acss2|60525|acyl-CoA synthetase short-chain family member 2	AK093831|Acss2|60525|acyl-CoA synthetase short-chain family member 2
mm9_v1_chr19_+_42007957_42008102	0.154267	NHLH1,2.p2	NM_023740|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK151505|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK168042|Zdhhc16|74168|zinc finger, DHHC domain containing 16	BC010835|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AF176814|Zdhhc16|74168|zinc finger, DHHC domain containing 16	AK183781|Zdhhc16|74168|zinc finger, DHHC domain containing 16
mm9_v1_chr8_+_71612616_71612811	0.15425	NHLH1,2.p2	AK151200|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	NM_007509|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK170110|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169155|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169270|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151322|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK151586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152718|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK152766|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159133|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159153|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159701|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160080|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159986|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK159586|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK169420|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK160854|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK146499|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK153341|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK168852|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC046302|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC012497|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	Y12634|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	BC085300|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK166669|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK182828|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK205457|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK206476|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209216|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209288|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209472|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK209631|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK212223|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK213950|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215019|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK215298|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK216725|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK217254|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK220015|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK214894|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK185732|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2	AK191995|Atp6v1b2|11966|ATPase, H+ transporting, lysosomal V1 subunit B2
mm9_v1_chr11_+_29593657_29593773	0.154164	NHLH1,2.p2	AK211699|Rtn4|68585|reticulon 4	AK218123|Rtn4|68585|reticulon 4	AY102280|Rtn4|68585|reticulon 4	NM_194051|Rtn4|68585|reticulon 4
mm9_v1_chr2_+_119151519_119151564	0.154147	NHLH1,2.p2	AK052322|Dll4|54485|delta-like 4 (Drosophila)	NM_019454|Dll4|54485|delta-like 4 (Drosophila)	AK004739|Dll4|54485|delta-like 4 (Drosophila)	AK031699|Dll4|54485|delta-like 4 (Drosophila)	AK165517|Dll4|54485|delta-like 4 (Drosophila)	AK171717|Dll4|54485|delta-like 4 (Drosophila)	BC049130|Dll4|54485|delta-like 4 (Drosophila)	AF253469|Dll4|54485|delta-like 4 (Drosophila)	BC042497|Dll4|54485|delta-like 4 (Drosophila)
mm9_v1_chr11_-_59623089_59623359	0.153836	NHLH1,2.p2	AK136071|Flcn|216805|folliculin	BC025820|Flcn|216805|folliculin	NM_146018|Flcn|216805|folliculin	AK148216|Flcn|216805|folliculin	AK161460|Flcn|216805|folliculin	AK039106|Flcn|216805|folliculin	AK080933|Flcn|216805|folliculin	AK172245|Flcn|216805|folliculin
mm9_v1_chr3_+_28680223_28680237	0.153812	NHLH1,2.p2	AY205262|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205263|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205264|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AY205265|Eif5a2|208691|eukaryotic translation initiation factor 5A2	NM_177586|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK036127|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr10_-_23506850_23506973	0.153299	NHLH1,2.p2	X15962|Rps12|20042|ribosomal protein S12
mm9_v1_chr14_+_52504516_52504626	0.153149	NHLH1,2.p2	NM_001029990|Mett11d1|52535|methyltransferase 11 domain containing 1	AK156895|Mett11d1|52535|methyltransferase 11 domain containing 1	AK172330|Mett11d1|52535|methyltransferase 11 domain containing 1	BC138944|Mett11d1|52535|methyltransferase 11 domain containing 1	BC145472|Mett11d1|52535|methyltransferase 11 domain containing 1	BC145473|Mett11d1|52535|methyltransferase 11 domain containing 1	BC145474|Mett11d1|52535|methyltransferase 11 domain containing 1	AK087101|Mett11d1|52535|methyltransferase 11 domain containing 1	AK155096|Mett11d1|52535|methyltransferase 11 domain containing 1	AK009576|Mett11d1|52535|methyltransferase 11 domain containing 1	AK032357|Mett11d1|52535|methyltransferase 11 domain containing 1
mm9_v1_chr14_-_55544648_55544750	0.152948	NHLH1,2.p2	U28728|Efs|13644|embryonal Fyn-associated substrate	AK163191|Efs|13644|embryonal Fyn-associated substrate	BC005438|Efs|13644|embryonal Fyn-associated substrate	AK030321|Efs|13644|embryonal Fyn-associated substrate
mm9_v1_chr11_-_20012953_20012967	0.152192	NHLH1,2.p2	NM_146243|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr1_-_107253012_107253082	0.151984	NHLH1,2.p2	AK035832|Rnf152|320311|ring finger protein 152
mm9_v1_chr17_-_35342157_35342435	0.151883	NHLH1,2.p2	AK080308|Lta|16992|lymphotoxin A	AK153694|Lta|16992|lymphotoxin A	BC099464|Lta|16992|lymphotoxin A	NM_010735|Lta|16992|lymphotoxin A	AK156659|Lta|16992|lymphotoxin A
mm9_v1_chr17_+_35031503_35031575	0.151851	NHLH1,2.p2	BC062159|Zbtb12|193736|zinc finger and BTB domain containing 12	NM_198886|Zbtb12|193736|zinc finger and BTB domain containing 12	BC020447|Zbtb12|193736|zinc finger and BTB domain containing 12
mm9_v1_chr1_-_59030272_59030346	0.151786	NHLH1,2.p2	AK036650|Trak2|70827|trafficking protein, kinesin binding 2	AK048261|Trak2|70827|trafficking protein, kinesin binding 2	AK014647|Trak2|70827|trafficking protein, kinesin binding 2	NM_172406|Trak2|70827|trafficking protein, kinesin binding 2
mm9_v1_chr2_-_27330682_27330707	0.151483	NHLH1,2.p2	BC031536|Brd3|67382|bromodomain containing 3
mm9_v1_chr8_-_125075222_125075228	0.151404	NHLH1,2.p2	NM_001037298|Fam38a|234839|family with sequence similarity 38, member A
mm9_v1_chr10_+_79516232_79516445	0.151385	NHLH1,2.p2	D87896|Gpx4|625249|glutathione peroxidase 4	NM_008162|Gpx4|625249|glutathione peroxidase 4	AF045768|Gpx4|625249|glutathione peroxidase 4	AK167881|Gpx4|625249|glutathione peroxidase 4	AK006441|Gpx4|625249|glutathione peroxidase 4	AK160389|Gpx4|625249|glutathione peroxidase 4	AK168027|Gpx4|625249|glutathione peroxidase 4	AF045769|Gpx4|625249|glutathione peroxidase 4	AK160509|Gpx4|625249|glutathione peroxidase 4	BC083137|Gpx4|625249|glutathione peroxidase 4
mm9_v1_chr2_-_155517936_155518062	0.15123	NHLH1,2.p2	AK216771|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AF509881|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	BC033274|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein	AK170085|Trpc4ap|56407|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm9_v1_chr2_-_164571430_164571435	0.150209	NHLH1,2.p2	AK006001|Wfdc3|71856|WAP four-disulfide core domain 3	AK007299|Wfdc3|71856|WAP four-disulfide core domain 3
mm9_v1_chr1_+_159342482_159342517	0.150043	NHLH1,2.p2	BC055845|2810025M15Rik|69953|RIKEN cDNA 2810025M15 gene
mm9_v1_chr8_+_124900542_124900551	0.14984	NHLH1,2.p2	BC030495|Zc3h18|76014|zinc finger CCCH-type containing 18	AK017933|Zc3h18|76014|zinc finger CCCH-type containing 18
mm9_v1_chr16_-_17891608_17891820	0.149839	NHLH1,2.p2	AK153026|Dgcr2|13356|DiGeorge syndrome critical region gene 2	X95480|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC062978|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK145495|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK042786|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK161022|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163903|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK088131|Dgcr2|13356|DiGeorge syndrome critical region gene 2	D78641|Dgcr2|13356|DiGeorge syndrome critical region gene 2	BC060636|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK163872|Dgcr2|13356|DiGeorge syndrome critical region gene 2	AK141594|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_001109750|Dgcr2|13356|DiGeorge syndrome critical region gene 2	NM_010048|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr18_-_44821919_44821954	0.149766	NHLH1,2.p2	AK054528|Mcc|328949|mutated in colorectal cancers	NM_001085374|Mcc|328949|mutated in colorectal cancers	AK086823|Mcc|328949|mutated in colorectal cancers
mm9_v1_chr1_-_127332217_127332338	0.149527	NHLH1,2.p2	AK166529|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	AK166586|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)	BC080806|Actr3|74117|ARP3 actin-related protein 3 homolog (yeast)
mm9_v1_chr9_+_72584532_72584702	0.149521	NHLH1,2.p2	BC007184|Nedd4|17999|neural precursor cell expressed, developmentally down-regulated 4
mm9_v1_chr14_-_31166671_31166671	0.149134	NHLH1,2.p2	AK147415|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_001083616|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr14_-_122196838_122196921	0.148904	NHLH1,2.p2	BC158127|Dock9|105445|dedicator of cytokinesis 9
mm9_v1_chr4_-_125840501_125840584	0.148738	NHLH1,2.p2	BC019568|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	AK155132|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	NM_001162533|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene
mm9_v1_chr10_+_79132224_79132234	0.148611	NHLH1,2.p2	AK153467|Gm16517|110012|predicted gene, Gm16517
mm9_v1_chr6_+_77192839_77192971	0.147682	NHLH1,2.p2	BC027803|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr4_-_153349097_153349234	0.147623	NHLH1,2.p2	AB009377|Dffb|13368|DNA fragmentation factor, beta subunit	BC053052|Dffb|13368|DNA fragmentation factor, beta subunit	AK036094|Dffb|13368|DNA fragmentation factor, beta subunit	AK089267|Dffb|13368|DNA fragmentation factor, beta subunit	NM_007859|Dffb|13368|DNA fragmentation factor, beta subunit	AK077619|Dffb|13368|DNA fragmentation factor, beta subunit
mm9_v1_chr19_+_24748487_24748497	0.147614	NHLH1,2.p2	AK086895|E030010A14Rik|226040|RIKEN cDNA E030010A14 gene	AK142952|E030010A14Rik|226040|RIKEN cDNA E030010A14 gene	BC087877|E030010A14Rik|226040|RIKEN cDNA E030010A14 gene	AK143762|E030010A14Rik|226040|RIKEN cDNA E030010A14 gene	NM_183160|E030010A14Rik|226040|RIKEN cDNA E030010A14 gene
mm9_v1_chr13_+_85329004_85329091	0.147194	NHLH1,2.p2	AF287135|Ccnh|66671|cyclin H	AK137849|Ccnh|66671|cyclin H	AK078059|Ccnh|66671|cyclin H	NM_023243|Ccnh|66671|cyclin H
mm9_v1_chr15_+_100959358_100959377	0.146753	NHLH1,2.p2	Z31664|Acvrl1|11482|activin A receptor, type II-like 1
mm9_v1_chr15_-_100325669_100325697	0.14667	NHLH1,2.p2	BC035295|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	NM_153407|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK146924|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK050864|Csrnp2|207785|cysteine-serine-rich nuclear protein 2	AK166557|Csrnp2|207785|cysteine-serine-rich nuclear protein 2
mm9_v1_chr10_-_75130331_75130381	0.146238	NHLH1,2.p2	AK169961|Cabin1|104248|calcineurin binding protein 1	AK171567|Cabin1|104248|calcineurin binding protein 1
mm9_v1_chr10_+_80820218_80820329	0.146219	NHLH1,2.p2	AK154902|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK170185|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK149678|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK154386|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	AK171084|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	BC118620|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	BC119790|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene	NM_028657|F630110N24Rik|73822|RIKEN cDNA F630110N24 gene
mm9_v1_chr3_-_105804304_105804414	0.146078	NHLH1,2.p2	HM237137|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene	AK006407|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene	NM_029604|1700027A23Rik|100503311|RIKEN cDNA 1700027A23 gene
mm9_v1_chr10_+_101621491_101621538	0.145876	NHLH1,2.p2	NM_001162368|Mgat4c|67569|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)	AK015051|4930402I19Rik|73798|RIKEN cDNA 4930402I19 gene
mm9_v1_chr7_+_112788953_112788961	0.145811	NHLH1,2.p2	AK010994|Fxc1|14356|fractured callus expressed transcript 1
mm9_v1_chr2_+_155343802_155343802	0.145489	NHLH1,2.p2	AK085932|Acss2|60525|acyl-CoA synthetase short-chain family member 2
mm9_v1_chr15_-_79635069_79635133	0.145356	NHLH1,2.p2	AY394487|Nptxr|73340|neuronal pentraxin receptor	AF316612|Nptxr|73340|neuronal pentraxin receptor	BC141096|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr19_-_43749362_43749370	0.145323	NHLH1,2.p2	BC025908|Slc25a28|246696|solute carrier family 25, member 28	NM_145156|Slc25a28|246696|solute carrier family 25, member 28
mm9_v1_chr9_+_65907975_65908077	0.145057	NHLH1,2.p2	NM_011149|Ppib|19035|peptidylprolyl isomerase B	AK128977|Ppib|19035|peptidylprolyl isomerase B	AK002357|Ppib|19035|peptidylprolyl isomerase B	AK154073|Ppib|19035|peptidylprolyl isomerase B	M60456|Ppib|19035|peptidylprolyl isomerase B	BC013061|Ppib|19035|peptidylprolyl isomerase B
mm9_v1_chr16_-_17530777_17530885	0.144751	NHLH1,2.p2	AK007329|Thap7|69009|THAP domain containing 7
mm9_v1_chr7_+_140901005_140901043	0.144537	NHLH1,2.p2	NM_025392|Bccip|66165|BRCA2 and CDKN1A interacting protein	AK003666|Bccip|66165|BRCA2 and CDKN1A interacting protein	BC048465|Bccip|66165|BRCA2 and CDKN1A interacting protein	AK010684|Bccip|66165|BRCA2 and CDKN1A interacting protein
mm9_v1_chr1_+_94728419_94728433	0.144391	NHLH1,2.p2	BC062902|Gpc1|14733|glypican 1
mm9_v1_chrX_+_7305654_7305720	0.144333	NHLH1,2.p2	BC064757|Praf2|54637|PRA1 domain family 2	AK003344|Praf2|54637|PRA1 domain family 2	AK224918|Praf2|54637|PRA1 domain family 2	NM_138602|Praf2|54637|PRA1 domain family 2	AF229636|Praf2|54637|PRA1 domain family 2
mm9_v1_chr2_-_155969865_155969946	0.143958	NHLH1,2.p2	AK084831|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	BC012651|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	BC010586|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK005724|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK159828|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK003786|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK075575|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AJ222660|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK132838|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	AK148527|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)	NM_010911|Nfs1|18041|nitrogen fixation gene 1 (S. cerevisiae)
mm9_v1_chr11_+_59661532_59661635	0.143789	NHLH1,2.p2	BC020084|Nt5m|103850|5',3'-nucleotidase, mitochondrial	NM_134029|Nt5m|103850|5',3'-nucleotidase, mitochondrial	AY061970|Nt5m|103850|5',3'-nucleotidase, mitochondrial
mm9_v1_chr15_+_27396405_27396728	0.143639	NHLH1,2.p2	AK083135|Ank|11732|progressive ankylosis	DQ832285|Ank|11732|progressive ankylosis	NM_020332|Ank|11732|progressive ankylosis	BC042644|Ank|11732|progressive ankylosis	BC054379|Ank|11732|progressive ankylosis	AK148070|Ank|11732|progressive ankylosis	AF001532|Ank|11732|progressive ankylosis	AF274752|Ank|11732|progressive ankylosis
mm9_v1_chr2_-_25978328_25978339	0.143594	NHLH1,2.p2	AK147293|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	NM_026495|Nacc2|67991|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm9_v1_chr1_-_54251877_54252011	0.143577	NHLH1,2.p2	AK042922|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_001001883|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	NM_172655|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	AK047602|Hecw2|329152|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm9_v1_chr9_-_115219177_115219267	0.143439	NHLH1,2.p2	AK145674|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK012153|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK154979|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK148065|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK018758|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AX799084|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	AK170079|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr4_+_151648348_151648470	0.143207	NHLH1,2.p2	NM_178406|Gpr153|100129|G protein-coupled receptor 153
mm9_v1_chr11_-_106243873_106243954	0.142551	NHLH1,2.p2	AK007801|Icam2|15896|intercellular adhesion molecule 2	BC039128|Icam2|15896|intercellular adhesion molecule 2	BC039970|Icam2|15896|intercellular adhesion molecule 2	NM_010494|Icam2|15896|intercellular adhesion molecule 2	X65493|Icam2|15896|intercellular adhesion molecule 2
mm9_v1_chr19_-_10175990_10176185	0.142219	NHLH1,2.p2	AF126798|Fads2|56473|fatty acid desaturase 2	NM_019699|Fads2|56473|fatty acid desaturase 2	AK143524|Fads2|56473|fatty acid desaturase 2	AK032633|Fads2|56473|fatty acid desaturase 2	AK083282|Fads2|56473|fatty acid desaturase 2	AK031337|Fads2|56473|fatty acid desaturase 2
mm9_v1_chr5_+_114581164_114581232	0.142151	NHLH1,2.p2	NM_011677|Ung|22256|uracil DNA glycosylase	X99018|Ung|22256|uracil DNA glycosylase	U55041|Ung|22256|uracil DNA glycosylase	AK168709|Ung|22256|uracil DNA glycosylase	AK168785|Ung|22256|uracil DNA glycosylase	BC052853|Ung|22256|uracil DNA glycosylase
mm9_v1_chr5_+_92566909_92567009	0.14183	NHLH1,2.p2	AK166587|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	BC016069|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	NM_019490|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK156070|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK144638|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK172425|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)	AK168433|Uso1|56041|USO1 homolog, vesicle docking protein (yeast)
mm9_v1_chr10_-_77875707_77875787	0.141587	NHLH1,2.p2	BC065994|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	AK077540|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	BC022910|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	U79773|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	U79774|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	BC065993|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)	NM_010925|Rrp1|18114|ribosomal RNA processing 1 homolog (S. cerevisiae)
mm9_v1_chr10_-_95026787_95026872	0.141348	NHLH1,2.p2	NM_027722|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr10_+_40069113_40069226	0.141078	NHLH1,2.p2	AK122421|Cdk19|78334|cyclin-dependent kinase 19	NM_001168304|Cdk19|78334|cyclin-dependent kinase 19	NM_198164|Cdk19|78334|cyclin-dependent kinase 19	AK053651|Cdk19|78334|cyclin-dependent kinase 19	BC137614|Cdk19|78334|cyclin-dependent kinase 19	BC144782|Cdk19|78334|cyclin-dependent kinase 19	BC080280|Cdk19|78334|cyclin-dependent kinase 19
mm9_v1_chr13_-_21842373_21842421	0.140865	NHLH1,2.p2	BC119612|Hist1h4k|319160|histone cluster 1, H4k	NM_178211|Hist1h4k|319160|histone cluster 1, H4k	BC096767|Hist1h4k|319160|histone cluster 1, H4k	AK139521|Hist1h4k|319160|histone cluster 1, H4k	BC117010|Hist1h4k|319160|histone cluster 1, H4k	BC117012|Hist1h4k|319160|histone cluster 1, H4k
mm9_v1_chr17_-_57226987_57227204	0.14059	NHLH1,2.p2	BC054831|Tubb4|22153|tubulin, beta 4	AK013717|Tubb4|22153|tubulin, beta 4	BC049112|Tubb4|22153|tubulin, beta 4	NM_009451|Tubb4|22153|tubulin, beta 4
mm9_v1_chr5_-_24107718_24107834	0.140028	NHLH1,2.p2	BC060525|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	AK005094|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	AK158019|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	NM_025891|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	AK019064|Smarcd3|66993|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
mm9_v1_chr2_+_125073450_125073494	0.139839	NHLH1,2.p2	AK152459|Dut|110074|deoxyuridine triphosphatase	AK011407|Dut|110074|deoxyuridine triphosphatase	AK003076|Dut|110074|deoxyuridine triphosphatase	BC053693|Dut|110074|deoxyuridine triphosphatase	AK153285|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr7_+_24919177_24919260	0.139685	NHLH1,2.p2	NM_019941|Zfp235|56525|zinc finger protein 235	AK045726|Zfp235|56525|zinc finger protein 235	AK002713|Zfp235|56525|zinc finger protein 235	AK147833|Zfp235|56525|zinc finger protein 235	AF167321|Zfp235|56525|zinc finger protein 235	AK139127|Zfp235|56525|zinc finger protein 235	BC099965|Zfp235|56525|zinc finger protein 235
mm9_v1_chr12_+_16660245_16660299	0.139082	NHLH1,2.p2	AK158943|Ntsr2|18217|neurotensin receptor 2	NM_008747|Ntsr2|18217|neurotensin receptor 2	U51908|Ntsr2|18217|neurotensin receptor 2	BC141019|Ntsr2|18217|neurotensin receptor 2	AB041826|Ntsr2|18217|neurotensin receptor 2	AB041827|Ntsr2|18217|neurotensin receptor 2
mm9_v1_chr5_+_89012600_89012641	0.138992	NHLH1,2.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr9_-_88333710_88333807	0.138942	NHLH1,2.p2	AK046839|Snx14|244962|sorting nexin 14	AK049371|Snx14|244962|sorting nexin 14	AK082389|Snx14|244962|sorting nexin 14	BC080799|Snx14|244962|sorting nexin 14	NM_172926|Snx14|244962|sorting nexin 14
mm9_v1_chr17_+_24987429_24987437	0.138556	NHLH1,2.p2	NM_024284|Hagh|14651|hydroxyacyl glutathione hydrolase
mm9_v1_chr13_-_32430412_32430498	0.138184	NHLH1,2.p2	BC031788|Gmds|218138|GDP-mannose 4, 6-dehydratase	NM_146041|Gmds|218138|GDP-mannose 4, 6-dehydratase	BC093502|Gmds|218138|GDP-mannose 4, 6-dehydratase	AK086076|Gmds|218138|GDP-mannose 4, 6-dehydratase
mm9_v1_chr18_+_11998043_11998097	0.138109	NHLH1,2.p2	AK158396|Cables1|63955|CDK5 and Abl enzyme substrate 1	AF328140|Cables1|63955|CDK5 and Abl enzyme substrate 1
mm9_v1_chr2_-_75816235_75816356	0.13747	NHLH1,2.p2	NM_001081228|Ttc30a2|620631|tetratricopeptide repeat domain 30A2	BC157934|Ttc30a2|620631|tetratricopeptide repeat domain 30A2	BC172090|Ttc30a2|620631|tetratricopeptide repeat domain 30A2	BC158130|Ttc30a2|620631|tetratricopeptide repeat domain 30A2
mm9_v1_chr2_-_154429414_154429464	0.137297	NHLH1,2.p2	AK003127|Pxmp4|59038|peroxisomal membrane protein 4	AK019381|Pxmp4|59038|peroxisomal membrane protein 4	AK013793|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr1_-_22812829_22812843	0.137002	NHLH1,2.p2	AK090169|Rims1|116837|regulating synaptic membrane exocytosis 1
mm9_v1_chr5_-_3596298_3596546	0.13694	NHLH1,2.p2	BC029549|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene	NM_172991|C030048B08Rik|269623|RIKEN cDNA C030048B08 gene
mm9_v1_chr4_+_84530230_84530239	0.136663	NHLH1,2.p2	NM_175275|Cntln|338349|centlein, centrosomal protein	NM_177385|Cntln|338349|centlein, centrosomal protein
mm9_v1_chr7_+_52897090_52897145	0.136299	NHLH1,2.p2	AK052976|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator	AK036109|Mamstr|74490|MEF2 activating motif and SAP domain containing transcriptional regulator
mm9_v1_chr6_-_118089060_118089172	0.136263	NHLH1,2.p2	AK028045|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK145992|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK160867|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	AK019496|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2	NM_030165|Csgalnact2|78752|chondroitin sulfate N-acetylgalactosaminyltransferase 2
mm9_v1_chr13_-_101262292_101262366	0.136164	NHLH1,2.p2	BC016231|Gtf2h2|23894|general transcription factor II H, polypeptide 2	AK154739|Gtf2h2|23894|general transcription factor II H, polypeptide 2	AK145720|Gtf2h2|23894|general transcription factor II H, polypeptide 2
mm9_v1_chr8_+_36650839_36650928	0.136053	NHLH1,2.p2	BC082308|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1	NM_001081279|Mfhas1|52065|malignant fibrous histiocytoma amplified sequence 1
mm9_v1_chr9_-_21875719_21875761	0.135555	NHLH1,2.p2	AK046492|Zfp653|319601|zinc finger protein 653	AK157635|Zfp653|319601|zinc finger protein 653
mm9_v1_chr19_-_4163244_4163282	0.135375	NHLH1,2.p2	AJ007938|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	NM_021485|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2	BC005694|Rps6kb2|58988|ribosomal protein S6 kinase, polypeptide 2
mm9_v1_chr6_+_8209296_8209471	0.135281	NHLH1,2.p2	AK158918|Gm16039|100036521|predicted gene 16039	AK009885|Gm16039|100036521|predicted gene 16039
mm9_v1_chr1_-_175263540_175263633	0.134989	NHLH1,2.p2	AY289754|Darc|13349|Duffy blood group, chemokine receptor	AY291295|Darc|13349|Duffy blood group, chemokine receptor	AF016584|Darc|13349|Duffy blood group, chemokine receptor	BC005583|Darc|13349|Duffy blood group, chemokine receptor	AF109159|Darc|13349|Duffy blood group, chemokine receptor	NM_010045|Darc|13349|Duffy blood group, chemokine receptor
mm9_v1_chr1_+_34516590_34516643	0.134975	NHLH1,2.p2	NM_011206|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	U52523|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	AK144353|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18	U35124|Ptpn18|19253|protein tyrosine phosphatase, non-receptor type 18
mm9_v1_chr13_-_69877709_69877899	0.134918	NHLH1,2.p2	BC058543|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116979|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116981|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr8_+_23337748_23337837	0.134566	NHLH1,2.p2	BC029898|Thsd1|56229|thrombospondin, type I, domain 1	AK049636|Thsd1|56229|thrombospondin, type I, domain 1	BC051957|Thsd1|56229|thrombospondin, type I, domain 1	AK052555|Thsd1|56229|thrombospondin, type I, domain 1
mm9_v1_chr11_-_69615126_69615217	0.134545	NHLH1,2.p2	NM_010198|Fgf11|14166|fibroblast growth factor 11	U66203|Fgf11|14166|fibroblast growth factor 11	BC066859|Fgf11|14166|fibroblast growth factor 11
mm9_v1_chr5_+_22940229_22940260	0.134111	NHLH1,2.p2	NM_026984|Mll5|69188|myeloid/lymphoid or mixed-lineage leukemia 5	AK021284|Mll5|69188|myeloid/lymphoid or mixed-lineage leukemia 5
mm9_v1_chr12_+_56937357_56937396	0.133941	NHLH1,2.p2	BC034885|Brms1l|52592|breast cancer metastasis-suppressor 1-like
mm9_v1_chr14_-_103746016_103746030	0.133826	NHLH1,2.p2	AK149225|Mycbp2|105689|MYC binding protein 2	NM_207215|Mycbp2|105689|MYC binding protein 2	AK048441|Mycbp2|105689|MYC binding protein 2	AK081652|Mycbp2|105689|MYC binding protein 2
mm9_v1_chr9_+_53149188_53149418	0.133733	NHLH1,2.p2	AK046924|Exph5|320051|exophilin 5	AK044881|Exph5|320051|exophilin 5
mm9_v1_chr3_-_152331083_152331103	0.133642	NHLH1,2.p2	AK053807|Ak5|229949|adenylate kinase 5	NM_001081277|Ak5|229949|adenylate kinase 5
mm9_v1_chr10_+_127707555_127707756	0.133453	NHLH1,2.p2	AK149924|Stat2|20847|signal transducer and activator of transcription 2	AK150070|Stat2|20847|signal transducer and activator of transcription 2	AK149838|Stat2|20847|signal transducer and activator of transcription 2	AF187231|Stat2|20847|signal transducer and activator of transcription 2	AF206162|Stat2|20847|signal transducer and activator of transcription 2	NM_019963|Stat2|20847|signal transducer and activator of transcription 2	AF088862|Stat2|20847|signal transducer and activator of transcription 2
mm9_v1_chr6_+_48791481_48791563	0.133441	NHLH1,2.p2	NM_025326|Tmem176a|66058|transmembrane protein 176A	AK002546|Tmem176a|66058|transmembrane protein 176A	AK004315|Tmem176a|66058|transmembrane protein 176A	AK165660|Tmem176a|66058|transmembrane protein 176A	AK150576|Tmem176a|66058|transmembrane protein 176A	AK079378|Tmem176a|66058|transmembrane protein 176A	BC010831|Tmem176a|66058|transmembrane protein 176A	AK162991|Tmem176a|66058|transmembrane protein 176A
mm9_v1_chr11_-_115560620_115560673	0.132401	NHLH1,2.p2	D85748|Grb2|14784|growth factor receptor bound protein 2	U07617|Grb2|14784|growth factor receptor bound protein 2	AK170845|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr2_+_38863553_38863815	0.132399	NHLH1,2.p2	BC024482|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK008255|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	NM_028809|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like	AK181564|Arpc5l|74192|actin related protein 2/3 complex, subunit 5-like
mm9_v1_chr13_+_13529868_13529883	0.132077	NHLH1,2.p2	NM_010917|Nid1|18073|nidogen 1	BC052939|Nid1|18073|nidogen 1
mm9_v1_chr10_-_61693914_61693931	0.132071	NHLH1,2.p2	BC003872|Tspan15|70423|tetraspanin 15
mm9_v1_chrX_-_98615554_98615567	0.13197	NHLH1,2.p2	AK082075|Zmym3|56364|zinc finger, MYM-type 3	NM_001177988|Zmym3|56364|zinc finger, MYM-type 3	NM_019831|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr15_-_102552494_102552522	0.131461	NHLH1,2.p2	AK018734|Calcoco1|67488|calcium binding and coiled coil domain 1	AK007393|Calcoco1|67488|calcium binding and coiled coil domain 1	BC054783|Calcoco1|67488|calcium binding and coiled coil domain 1	AK220400|Calcoco1|67488|calcium binding and coiled coil domain 1	AK035598|Calcoco1|67488|calcium binding and coiled coil domain 1
mm9_v1_chr11_+_77845814_77845821	0.131249	NHLH1,2.p2	NM_183286|Dhrs13|70451|dehydrogenase/reductase (SDR family) member 13
mm9_v1_chr7_+_119571219_119571592	0.131136	NHLH1,2.p2	BC059236|Parva|57342|parvin, alpha	NM_020606|Parva|57342|parvin, alpha	AB045321|Parva|57342|parvin, alpha	AF237774|Parva|57342|parvin, alpha	AK162796|Parva|57342|parvin, alpha	AK076473|Parva|57342|parvin, alpha	AF264766|Parva|57342|parvin, alpha	BC039750|Parva|57342|parvin, alpha
mm9_v1_chrX_-_98615096_98615252	0.131132	NHLH1,2.p2	BC042699|Zmym3|56364|zinc finger, MYM-type 3	BC050131|Zmym3|56364|zinc finger, MYM-type 3	AK033470|Zmym3|56364|zinc finger, MYM-type 3	BC108366|Zmym3|56364|zinc finger, MYM-type 3	NM_001177985|Zmym3|56364|zinc finger, MYM-type 3	NM_001177986|Zmym3|56364|zinc finger, MYM-type 3
mm9_v1_chr15_-_58046428_58046480	0.1306	NHLH1,2.p2	AK014793|Fbxo32|67731|F-box protein 32	NM_026346|Fbxo32|67731|F-box protein 32	AF441120|Fbxo32|67731|F-box protein 32
mm9_v1_chr2_+_28555680_28555693	0.130219	NHLH1,2.p2	NM_001033874|Ak8|68870|adenylate kinase 8	AK004439|Ak8|68870|adenylate kinase 8	BC100481|Ak8|68870|adenylate kinase 8	BC109352|Ak8|68870|adenylate kinase 8
mm9_v1_chr12_-_106923394_106923487	0.129939	NHLH1,2.p2	AK085790|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK083213|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	BC062182|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	AK086802|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)	NM_029654|Atg2b|76559|ATG2 autophagy related 2 homolog B (S. cerevisiae)
mm9_v1_chr19_+_11986907_11986958	0.129879	NHLH1,2.p2	AK087559|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170745|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK170408|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK154873|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	AK085013|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)	BC058941|Patl1|225929|protein associated with topoisomerase II homolog 1 (yeast)
mm9_v1_chr7_+_134716896_134716950	0.129688	NHLH1,2.p2	AK089062|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	AK005277|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	BC138913|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)	BC145734|Phkg2|68961|phosphorylase kinase, gamma 2 (testis)
mm9_v1_chr12_-_81744771_81744855	0.129651	NHLH1,2.p2	BC107315|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC107316|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132421|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC132423|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U66870|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC099476|Erh|13877|enhancer of rudimentary homolog (Drosophila)	U01140|Erh|13877|enhancer of rudimentary homolog (Drosophila)	BC083141|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK171834|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK010451|Erh|13877|enhancer of rudimentary homolog (Drosophila)	D73368|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK168188|Erh|13877|enhancer of rudimentary homolog (Drosophila)	AK080617|Erh|13877|enhancer of rudimentary homolog (Drosophila)	NM_007951|Erh|13877|enhancer of rudimentary homolog (Drosophila)
mm9_v1_chr3_-_87734023_87734090	0.129546	NHLH1,2.p2	AK082223|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	BC012224|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK165264|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK030684|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK035389|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1	AK148128|Rrnad1|229503|ribosomal RNA adenine dimethylase domain containing 1
mm9_v1_chr13_-_115880163_115880420	0.129215	NHLH1,2.p2	BC057160|Pelo|105083|pelota homolog (Drosophila)	BC050209|Pelo|105083|pelota homolog (Drosophila)	AK170635|Pelo|105083|pelota homolog (Drosophila)	NM_134058|Pelo|105083|pelota homolog (Drosophila)	AK146382|Pelo|105083|pelota homolog (Drosophila)	AK168228|Pelo|105083|pelota homolog (Drosophila)
mm9_v1_chr9_+_43875103_43875168	0.128577	NHLH1,2.p2	NM_198092|Usp2|53376|ubiquitin specific peptidase 2	AK138799|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr12_+_56937309_56937356	0.128456	NHLH1,2.p2	AK154678|Brms1l|52592|breast cancer metastasis-suppressor 1-like	AK155742|Brms1l|52592|breast cancer metastasis-suppressor 1-like	NM_001037756|Brms1l|52592|breast cancer metastasis-suppressor 1-like
mm9_v1_chr5_+_64551449_64551546	0.128349	NHLH1,2.p2	AK080526|Tbc1d1|57915|TBC1 domain family, member 1	NM_019636|Tbc1d1|57915|TBC1 domain family, member 1	AK159256|Tbc1d1|57915|TBC1 domain family, member 1	U33005|Tbc1d1|57915|TBC1 domain family, member 1
mm9_v1_chr12_-_4483975_4484031	0.12834	NHLH1,2.p2	U64828|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr12_+_21117704_21117848	0.128038	NHLH1,2.p2	AK172944|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	BC096022|Asap2|211914|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm9_v1_chr1_+_37486981_37487095	0.127935	NHLH1,2.p2	AK132757|Unc50|67387|unc-50 homolog (C. elegans)	NM_026123|Unc50|67387|unc-50 homolog (C. elegans)	AK135885|Unc50|67387|unc-50 homolog (C. elegans)	AK003273|Unc50|67387|unc-50 homolog (C. elegans)	AY017214|Unc50|67387|unc-50 homolog (C. elegans)	AK004433|Unc50|67387|unc-50 homolog (C. elegans)	BC019484|Unc50|67387|unc-50 homolog (C. elegans)
mm9_v1_chr8_-_23587100_23587150	0.127922	NHLH1,2.p2	AK131902|AI316807|102032|expressed sequence AI316807	AK140957|AI316807|102032|expressed sequence AI316807
mm9_v1_chr7_+_17460662_17460665	0.12792	NHLH1,2.p2	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr9_-_21116703_21116742	0.127871	NHLH1,2.p2	BC003704|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit	AK160161|Ap1m2|11768|adaptor protein complex AP-1, mu 2 subunit
mm9_v1_chr17_-_36408841_36408948	0.127823	NHLH1,2.p2	AB046382|Trim39|79263|tripartite motif-containing 39	NM_024468|Trim39|79263|tripartite motif-containing 39
mm9_v1_chr2_+_151368197_151368330	0.127647	NHLH1,2.p2	NM_008019|Fkbp1a|14225|FK506 binding protein 1a	AK019362|Fkbp1a|14225|FK506 binding protein 1a	AK010693|Fkbp1a|14225|FK506 binding protein 1a	AK145400|Fkbp1a|14225|FK506 binding protein 1a	AK169242|Fkbp1a|14225|FK506 binding protein 1a	AK141261|Fkbp1a|14225|FK506 binding protein 1a	AK168333|Fkbp1a|14225|FK506 binding protein 1a
mm9_v1_chr17_-_10512094_10512209	0.127517	NHLH1,2.p2	BC053426|Qk|19317|quaking
mm9_v1_chr7_+_4071171_4071355	0.127452	NHLH1,2.p2	AF190699|Ttyh1|57776|tweety homolog 1 (Drosophila)	AF190991|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK081981|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK048413|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC065694|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK018148|Ttyh1|57776|tweety homolog 1 (Drosophila)	BC046310|Ttyh1|57776|tweety homolog 1 (Drosophila)	AB162929|Ttyh1|57776|tweety homolog 1 (Drosophila)	AK042758|Ttyh1|57776|tweety homolog 1 (Drosophila)
mm9_v1_chr5_+_118426802_118426818	0.127336	NHLH1,2.p2	AK048131|Fbxo21|231670|F-box protein 21	AK048542|Fbxo21|231670|F-box protein 21
mm9_v1_chr13_-_115892166_115892179	0.127263	NHLH1,2.p2	AK035870|Itga1|109700|integrin alpha 1	NM_001033228|Itga1|109700|integrin alpha 1
mm9_v1_chrX_+_149932693_149932774	0.127148	NHLH1,2.p2	AK076159|Ubqln2|54609|ubiquilin 2	AF177346|Ubqln2|54609|ubiquilin 2	BC053022|Ubqln2|54609|ubiquilin 2	NM_018798|Ubqln2|54609|ubiquilin 2
mm9_v1_chr18_+_46757333_46757491	0.127127	NHLH1,2.p2	AK019451|Eif1a|13664|eukaryotic translation initiation factor 1A	NM_010120|Eif1a|13664|eukaryotic translation initiation factor 1A	AK013268|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150651|Eif1a|13664|eukaryotic translation initiation factor 1A	AF026481|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150673|Eif1a|13664|eukaryotic translation initiation factor 1A	AK150677|Eif1a|13664|eukaryotic translation initiation factor 1A	AK009026|Eif1a|13664|eukaryotic translation initiation factor 1A	AK166368|Eif1a|13664|eukaryotic translation initiation factor 1A	BC027437|Eif1a|13664|eukaryotic translation initiation factor 1A	AK167333|Eif1a|13664|eukaryotic translation initiation factor 1A
mm9_v1_chr19_+_42056244_42056262	0.126981	NHLH1,2.p2	NM_145500|Ubtd1|226122|ubiquitin domain containing 1	AK078479|Ubtd1|226122|ubiquitin domain containing 1
mm9_v1_chr10_-_126748757_126748841	0.126798	NHLH1,2.p2	NM_001003913|Mars|216443|methionine-tRNA synthetase	NM_001171582|Mars|216443|methionine-tRNA synthetase
mm9_v1_chr2_-_136213509_136213702	0.126478	NHLH1,2.p2	AK163530|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK032593|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK079080|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK013814|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	BC099417|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	AK077967|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7	NM_172858|Pak7|241656|p21 protein (Cdc42/Rac)-activated kinase 7
mm9_v1_chr17_+_24641034_24641180	0.126441	NHLH1,2.p2	AK049987|Caskin1|268932|CASK interacting protein 1
mm9_v1_chr3_+_58380577_58380636	0.126254	NHLH1,2.p2	NM_001040396|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK017528|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK032838|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK047958|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC132453|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC138424|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK013022|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	BC019970|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene	AK146778|2810407C02Rik|69227|RIKEN cDNA 2810407C02 gene
mm9_v1_chr10_-_13272899_13272947	0.126123	NHLH1,2.p2	BC037606|Pex3|56535|peroxisomal biogenesis factor 3	AK005315|Pex3|56535|peroxisomal biogenesis factor 3	AK012827|Pex3|56535|peroxisomal biogenesis factor 3	AK146934|Pex3|56535|peroxisomal biogenesis factor 3	NM_001164195|Pex3|56535|peroxisomal biogenesis factor 3	NM_019961|Pex3|56535|peroxisomal biogenesis factor 3
mm9_v1_chr18_+_57628139_57628180	0.126058	NHLH1,2.p2	NM_001134697|Ctxn3|629147|cortexin 3	AK042789|Ctxn3|629147|cortexin 3
mm9_v1_chr4_+_138011061_138011100	0.125912	NHLH1,2.p2	NM_025451|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1	AY523601|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr15_+_88692581_88692634	0.12585	NHLH1,2.p2	AK168014|Pim3|223775|proviral integration site 3	BC017621|Pim3|223775|proviral integration site 3	NM_145478|Pim3|223775|proviral integration site 3
mm9_v1_chr11_-_100217433_100217454	0.125746	NHLH1,2.p2	BC053043|Hap1|15114|huntingtin-associated protein 1	NM_010404|Hap1|15114|huntingtin-associated protein 1	NM_177981|Hap1|15114|huntingtin-associated protein 1
mm9_v1_chr3_+_88425294_88425344	0.125624	NHLH1,2.p2	NM_001198912|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	NM_001198913|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr15_-_31297286_31297513	0.125561	NHLH1,2.p2	AK089667|Ankrd33b|67434|ankyrin repeat domain 33B	AK170894|Ankrd33b|67434|ankyrin repeat domain 33B	AK017844|Ankrd33b|67434|ankyrin repeat domain 33B	AK002572|Ankrd33b|67434|ankyrin repeat domain 33B	AK012871|Ankrd33b|67434|ankyrin repeat domain 33B	AK156757|Ankrd33b|67434|ankyrin repeat domain 33B	BC100327|Ankrd33b|67434|ankyrin repeat domain 33B	NM_001164441|Ankrd33b|67434|ankyrin repeat domain 33B	NM_026153|Ankrd33b|67434|ankyrin repeat domain 33B	NM_027496|Ankrd33b|67434|ankyrin repeat domain 33B
mm9_v1_chr11_-_74981653_74981653	0.12542	NHLH1,2.p2	NM_001098203|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chr4_-_155243505_155243560	0.125177	NHLH1,2.p2	AK089229|Gltpd1|79554|glycolipid transfer protein domain containing 1	AK040664|Gltpd1|79554|glycolipid transfer protein domain containing 1	NM_024472|Gltpd1|79554|glycolipid transfer protein domain containing 1
mm9_v1_chr18_+_67624517_67624527	0.12504	NHLH1,2.p2	AK143220|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr9_+_118835589_118835685	0.124815	NHLH1,2.p2	AJ344340|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	AK013115|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	NM_133710|Ctdspl|69274|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
mm9_v1_chrX_-_34442878_34442893	0.124708	NHLH1,2.p2	AK042690|Nkrf|77286|NF-kappaB repressing factor	NM_029891|Nkrf|77286|NF-kappaB repressing factor
mm9_v1_chr6_+_88852244_88852316	0.123509	NHLH1,2.p2	NM_011906|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK155116|Tpra1|24100|transmembrane protein, adipocyte asscociated 1	AK172045|Tpra1|24100|transmembrane protein, adipocyte asscociated 1
mm9_v1_chr5_-_98459943_98460087	0.123484	NHLH1,2.p2	BC076595|Antxr2|71914|anthrax toxin receptor 2	NM_133738|Antxr2|71914|anthrax toxin receptor 2	AK155460|Antxr2|71914|anthrax toxin receptor 2
mm9_v1_chr2_-_72931338_72931457	0.123283	NHLH1,2.p2	
mm9_v1_chr10_+_127814144_127814228	0.123155	NHLH1,2.p2	AK144017|Ankrd52|237615|ankyrin repeat domain 52	AK032429|Ankrd52|237615|ankyrin repeat domain 52	NM_172790|Ankrd52|237615|ankyrin repeat domain 52	AK090124|Ankrd52|237615|ankyrin repeat domain 52	AK035533|Ankrd52|237615|ankyrin repeat domain 52	BC117907|Ankrd52|237615|ankyrin repeat domain 52	BC117908|Ankrd52|237615|ankyrin repeat domain 52
mm9_v1_chr14_-_119322244_119322388	0.122965	NHLH1,2.p2	AK129256|Dzip1|66573|DAZ interacting protein 1	NM_025943|Dzip1|66573|DAZ interacting protein 1
mm9_v1_chr11_+_78075242_78075302	0.12289	NHLH1,2.p2	AK150829|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	NM_001002004|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC080706|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	AK149719|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC075633|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene	BC019798|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chrX_+_131252542_131252558	0.122823	NHLH1,2.p2	AK019405|Armcx1|78248|armadillo repeat containing, X-linked 1	BC021410|Armcx1|78248|armadillo repeat containing, X-linked 1
mm9_v1_chr11_-_58717666_58717726	0.122793	NHLH1,2.p2	BC108271|Zfp39|22698|zinc finger protein 39	AK141135|Zfp39|22698|zinc finger protein 39	AK045944|Zfp39|22698|zinc finger protein 39	NM_011758|Zfp39|22698|zinc finger protein 39
mm9_v1_chr16_+_20590162_20590218	0.12271	NHLH1,2.p2	AK048916|Vwa5b2|328643|von Willebrand factor A domain containing 5B2	BC052055|Vwa5b2|328643|von Willebrand factor A domain containing 5B2
mm9_v1_chr7_+_95426585_95426756	0.122613	NHLH1,2.p2	AK146858|Ctsc|13032|cathepsin C	NM_009982|Ctsc|13032|cathepsin C	AK150761|Ctsc|13032|cathepsin C	AK151711|Ctsc|13032|cathepsin C	AK153168|Ctsc|13032|cathepsin C	AK002454|Ctsc|13032|cathepsin C	AK049406|Ctsc|13032|cathepsin C	AK167882|Ctsc|13032|cathepsin C	U89269|Ctsc|13032|cathepsin C	U74683|Ctsc|13032|cathepsin C	AK151388|Ctsc|13032|cathepsin C	AK152524|Ctsc|13032|cathepsin C	BC067063|Ctsc|13032|cathepsin C	AK151861|Ctsc|13032|cathepsin C
mm9_v1_chr7_-_19734531_19734614	0.122544	NHLH1,2.p2	AK035587|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	NM_026111|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	AK045687|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	BC058181|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	AK007701|Qpctl|67369|glutaminyl-peptide cyclotransferase-like	AK007555|Qpctl|67369|glutaminyl-peptide cyclotransferase-like
mm9_v1_chr5_-_31597792_31598351	0.122472	NHLH1,2.p2	BC139278|Fndc4|64339|fibronectin type III domain containing 4	BC139292|Fndc4|64339|fibronectin type III domain containing 4	AK018154|Fndc4|64339|fibronectin type III domain containing 4	AK013203|Fndc4|64339|fibronectin type III domain containing 4	AK163183|Fndc4|64339|fibronectin type III domain containing 4	NM_022424|Fndc4|64339|fibronectin type III domain containing 4
mm9_v1_chr12_+_62624134_62624139	0.122288	NHLH1,2.p2	AK078312|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr5_-_122822329_122822391	0.122239	NHLH1,2.p2	BC019498|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene	AK005211|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene	AK150218|1500011H22Rik|68948|RIKEN cDNA 1500011H22 gene
mm9_v1_chr19_-_4839283_4839342	0.122142	NHLH1,2.p2	AF173379|Ccs|12460|copper chaperone for superoxide dismutase	BC026938|Ccs|12460|copper chaperone for superoxide dismutase	NM_016892|Ccs|12460|copper chaperone for superoxide dismutase
mm9_v1_chr10_+_74636715_74636718	0.121939	NHLH1,2.p2	AK017213|Bcr|110279|breakpoint cluster region
mm9_v1_chr15_+_76199357_76199385	0.121925	NHLH1,2.p2	BC061251|Fam203a|59053|family with sequence similarity 203, member A
mm9_v1_chr7_-_86993011_86993179	0.121495	NHLH1,2.p2	AK171427|Anpep|16790|alanyl (membrane) aminopeptidase
mm9_v1_chr9_-_20619426_20619525	0.121153	NHLH1,2.p2	BC024367|Col5a3|53867|collagen, type V, alpha 3	BC138417|Col5a3|53867|collagen, type V, alpha 3	BC138419|Col5a3|53867|collagen, type V, alpha 3	BC145269|Col5a3|53867|collagen, type V, alpha 3	AF176645|Col5a3|53867|collagen, type V, alpha 3	NM_016919|Col5a3|53867|collagen, type V, alpha 3	AB040491|Col5a3|53867|collagen, type V, alpha 3
mm9_v1_chr15_-_37722161_37722182	0.121132	NHLH1,2.p2	AK048440|Ncald|52589|neurocalcin delta	NM_134094|Ncald|52589|neurocalcin delta
mm9_v1_chr4_+_3866023_3866087	0.120608	NHLH1,2.p2	AK003308|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_001190323|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_001190324|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK007844|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK145105|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK168647|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK169018|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_001190322|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	NM_181391|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	AK013200|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7	BC030366|Chchd7|66433|coiled-coil-helix-coiled-coil-helix domain containing 7
mm9_v1_chr14_-_27783615_27783757	0.120153	NHLH1,2.p2	AK030445|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK045438|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK088080|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AY113705|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK033566|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK146356|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	AK049307|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	NM_145221|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	BC063751|Appl1|72993|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm9_v1_chr3_+_145600974_145601015	0.120008	NHLH1,2.p2	BC049577|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK010378|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	BC115465|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	NM_025555|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK019404|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene	AK077565|2410004B18Rik|66421|RIKEN cDNA 2410004B18 gene
mm9_v1_chr3_-_152003317_152003373	0.1199	NHLH1,2.p2	BC138328|Fam73a|215708|family with sequence similarity 73, member A	BC138329|Fam73a|215708|family with sequence similarity 73, member A	AK166051|Fam73a|215708|family with sequence similarity 73, member A	BC059928|Fam73a|215708|family with sequence similarity 73, member A	AK044739|Fam73a|215708|family with sequence similarity 73, member A	BC098205|Fam73a|215708|family with sequence similarity 73, member A	AK045347|Fam73a|215708|family with sequence similarity 73, member A	AK143366|Fam73a|215708|family with sequence similarity 73, member A	AK085017|Fam73a|215708|family with sequence similarity 73, member A	NM_001162375|Fam73a|215708|family with sequence similarity 73, member A	NM_174868|Fam73a|215708|family with sequence similarity 73, member A
mm9_v1_chr1_+_74901489_74901677	0.119278	NHLH1,2.p2	NM_009872|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100712|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC103550|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100714|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)	BC100715|Cdk5r2|12570|cyclin-dependent kinase 5, regulatory subunit 2 (p39)
mm9_v1_chr4_+_140924106_140924134	0.119239	NHLH1,2.p2	BC147048|Fam131c|277743|family with sequence similarity 131, member C	BC147049|Fam131c|277743|family with sequence similarity 131, member C	NM_001085513|Fam131c|277743|family with sequence similarity 131, member C
mm9_v1_chr8_-_87502592_87502646	0.119238	NHLH1,2.p2	X54332|Junb|16477|Jun-B oncogene	BC092302|Junb|16477|Jun-B oncogene	BC003790|Junb|16477|Jun-B oncogene	AK155043|Junb|16477|Jun-B oncogene	AK150286|Junb|16477|Jun-B oncogene	AK156596|Junb|16477|Jun-B oncogene	AK159140|Junb|16477|Jun-B oncogene	AK159661|Junb|16477|Jun-B oncogene	AK088643|Junb|16477|Jun-B oncogene	AK141592|Junb|16477|Jun-B oncogene	AK144871|Junb|16477|Jun-B oncogene	AK145550|Junb|16477|Jun-B oncogene	AK149794|Junb|16477|Jun-B oncogene	AK150111|Junb|16477|Jun-B oncogene	AK150247|Junb|16477|Jun-B oncogene	AK159083|Junb|16477|Jun-B oncogene	AK159520|Junb|16477|Jun-B oncogene	AK160066|Junb|16477|Jun-B oncogene	NM_008416|Junb|16477|Jun-B oncogene	J03236|Junb|16477|Jun-B oncogene
mm9_v1_chr7_-_133225924_133225942	0.119115	NHLH1,2.p2	AK082731|Gsg1l|269994|GSG1-like	NM_001101488|Gsg1l|269994|GSG1-like
mm9_v1_chr8_+_91115856_91115922	0.118889	NHLH1,2.p2	AK192443|Nkd1|93960|naked cuticle 1 homolog (Drosophila)	AK193874|Nkd1|93960|naked cuticle 1 homolog (Drosophila)
mm9_v1_chr14_-_69902859_69902968	0.118798	NHLH1,2.p2	AK015770|Slc25a37|67712|solute carrier family 25, member 37
mm9_v1_chr13_-_115892027_115892148	0.118733	NHLH1,2.p2	BC014765|Itga1|109700|integrin alpha 1	AK169964|Itga1|109700|integrin alpha 1	AK029105|Itga1|109700|integrin alpha 1	AK043769|Itga1|109700|integrin alpha 1	AK077286|Pelo|105083|pelota homolog (Drosophila)	AK141204|Itga1|109700|integrin alpha 1
mm9_v1_chr8_+_123608252_123608373	0.118691	NHLH1,2.p2	BC138805|Foxf1a|15227|forkhead box F1a	BC138806|Foxf1a|15227|forkhead box F1a	NM_010426|Foxf1a|15227|forkhead box F1a
mm9_v1_chr8_+_107872704_107872772	0.118641	NHLH1,2.p2	BC151197|Slc9a5|277973|solute carrier family 9 (sodium/hydrogen exchanger), member 5
mm9_v1_chr2_-_25080160_25080179	0.118551	NHLH1,2.p2	BC022919|Tubb2c|227613|tubulin, beta 2C	BC083319|Tubb2c|227613|tubulin, beta 2C	AK015901|Tubb2c|227613|tubulin, beta 2C	AK167022|Tubb2c|227613|tubulin, beta 2C	AK076895|Tubb2c|227613|tubulin, beta 2C	AK146587|Tubb2c|227613|tubulin, beta 2C
mm9_v1_chr17_+_25325290_25325342	0.118467	NHLH1,2.p2	AK054549|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chrX_+_65931956_65932015	0.118402	NHLH1,2.p2	AF461114|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK205186|Fmr1|14265|fragile X mental retardation syndrome 1 homolog	AK208300|Fmr1|14265|fragile X mental retardation syndrome 1 homolog
mm9_v1_chr14_+_55502291_55502313	0.118222	NHLH1,2.p2	AK015644|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr11_+_95198329_95198359	0.118169	NHLH1,2.p2	AK077747|Fam117a|215512|family with sequence similarity 117, memberA	AK143632|Fam117a|215512|family with sequence similarity 117, memberA	AK165378|Fam117a|215512|family with sequence similarity 117, memberA	AK167417|Fam117a|215512|family with sequence similarity 117, memberA	NM_172543|Fam117a|215512|family with sequence similarity 117, memberA	BC055690|Fam117a|215512|family with sequence similarity 117, memberA
mm9_v1_chr9_+_3335139_3335230	0.117819	NHLH1,2.p2	AK160783|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	BC050863|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	NM_026303|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr18_+_38456364_38456458	0.117521	NHLH1,2.p2	AK011316|Rnf14|56736|ring finger protein 14	BC049079|Rnf14|56736|ring finger protein 14	NM_001164621|Rnf14|56736|ring finger protein 14
mm9_v1_chr2_+_164571458_164571553	0.117418	NHLH1,2.p2	AK018299|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AK145239|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AK168357|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AK168315|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	BC003486|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	NM_133763|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1	AB045974|Dnttip1|76233|deoxynucleotidyltransferase, terminal, interacting protein 1
mm9_v1_chr14_-_71028756_71028866	0.117313	NHLH1,2.p2	AK162866|Epb4.9|13829|erythrocyte protein band 4.9
mm9_v1_chr2_+_131036279_131036392	0.117305	NHLH1,2.p2	
mm9_v1_chr5_+_115461102_115461223	0.117091	NHLH1,2.p2	BC086646|Sppl3|74585|signal peptide peptidase 3	AK014709|Sppl3|74585|signal peptide peptidase 3
mm9_v1_chr14_+_28242002_28242052	0.117022	NHLH1,2.p2	AK016751|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	AK044563|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_001114879|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed	NM_028945|D14Abb1e|218850|DNA segment, Chr 14, Abbott 1 expressed
mm9_v1_chr2_-_155833636_155833712	0.116861	NHLH1,2.p2	AK163252|6430550D23Rik|320095|RIKEN cDNA 6430550D23 gene	AK032457|6430550D23Rik|320095|RIKEN cDNA 6430550D23 gene	AK047226|6430550D23Rik|320095|RIKEN cDNA 6430550D23 gene	NM_001145352|6430550D23Rik|320095|RIKEN cDNA 6430550D23 gene
mm9_v1_chr6_+_135312948_135312972	0.116769	NHLH1,2.p2	BC046299|Emp1|13730|epithelial membrane protein 1	NM_010128|Emp1|13730|epithelial membrane protein 1	X98403|Emp1|13730|epithelial membrane protein 1
mm9_v1_chr11_-_115048469_115048717	0.116742	NHLH1,2.p2	AK082469|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK003948|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK154593|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK020083|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	BC011315|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	NM_025400|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)	AK148048|Nat9|66176|N-acetyltransferase 9 (GCN5-related, putative)
mm9_v1_chr7_-_128217980_128218068	0.116675	NHLH1,2.p2	AK156382|Igsf6|80719|immunoglobulin superfamily, member 6	AK040569|Igsf6|80719|immunoglobulin superfamily, member 6	AK163058|Igsf6|80719|immunoglobulin superfamily, member 6	AK151417|Igsf6|80719|immunoglobulin superfamily, member 6	AK152186|Igsf6|80719|immunoglobulin superfamily, member 6	BC057951|Igsf6|80719|immunoglobulin superfamily, member 6	AJ278575|Igsf6|80719|immunoglobulin superfamily, member 6	NM_030691|Igsf6|80719|immunoglobulin superfamily, member 6
mm9_v1_chr10_+_13686174_13686209	0.116422	NHLH1,2.p2	AK147244|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147348|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	AK147655|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2	NM_010437|Hivep2|15273|human immunodeficiency virus type I enhancer binding protein 2
mm9_v1_chrX_+_53599573_53599586	0.116074	NHLH1,2.p2	AK142888|Zfp449|78619|zinc finger protein 449	AK036596|Zfp449|78619|zinc finger protein 449	NM_030139|Zfp449|78619|zinc finger protein 449	AK020600|Zfp449|78619|zinc finger protein 449
mm9_v1_chr10_+_80289424_80289427	0.11607	NHLH1,2.p2	AK087942|Oaz1|18245|ornithine decarboxylase antizyme 1
mm9_v1_chr8_-_116372376_116372514	0.116056	NHLH1,2.p2	BC094674|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	AK140876|Adamts18|208936|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
mm9_v1_chr8_+_125597668_125597810	0.115957	NHLH1,2.p2	AK184026|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr5_+_122161617_122161617	0.115791	NHLH1,2.p2	AF041472|Atxn2|20239|ataxin 2	NM_009125|Atxn2|20239|ataxin 2
mm9_v1_chr13_+_44826638_44826639	0.115565	NHLH1,2.p2	AK147226|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr14_+_8650470_8650537	0.115413	NHLH1,2.p2	NM_134080|Flnb|286940|filamin, beta	AK047011|Flnb|286940|filamin, beta
mm9_v1_chr17_-_33918179_33918224	0.115186	NHLH1,2.p2	AK009161|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr7_-_16844541_16844615	0.114953	NHLH1,2.p2	AK158027|C5ar1|12273|complement component 5a receptor 1
mm9_v1_chr6_-_72548335_72548408	0.114925	NHLH1,2.p2	AK049155|Elmod3|232089|ELMO/CED-12 domain containing 3	NM_144917|Elmod3|232089|ELMO/CED-12 domain containing 3	AK084010|Elmod3|232089|ELMO/CED-12 domain containing 3	AK164974|Elmod3|232089|ELMO/CED-12 domain containing 3
mm9_v1_chr2_-_120557235_120557264	0.114867	NHLH1,2.p2	BC117555|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	AK157271|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)	NM_026891|Cdan1|68968|congenital dyserythropoietic anemia, type I (human)
mm9_v1_chr9_-_106794158_106794229	0.114793	NHLH1,2.p2	AK176996|Manf|74840|mesencephalic astrocyte-derived neurotrophic factor
mm9_v1_chr12_+_109843975_109843976	0.114643	NHLH1,2.p2	AK134563|Evl|14026|Ena-vasodilator stimulated phosphoprotein	NM_001163395|Evl|14026|Ena-vasodilator stimulated phosphoprotein
mm9_v1_chr15_-_95485136_95485201	0.114624	NHLH1,2.p2	AK034882|Dbx2|223843|developing brain homeobox 2	NM_207533|Dbx2|223843|developing brain homeobox 2
mm9_v1_chrX_+_132373572_132373652	0.114405	NHLH1,2.p2	NM_001163015|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163016|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	NM_001163017|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK030638|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	AK081764|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117924|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2	BC117923|Gprasp2|245607|G protein-coupled receptor associated sorting protein 2
mm9_v1_chrX_-_147779368_147779423	0.114323	NHLH1,2.p2	AK038885|A230072E10Rik|331547|RIKEN cDNA A230072E10 gene	BC025887|A230072E10Rik|331547|RIKEN cDNA A230072E10 gene
mm9_v1_chr4_-_41587115_41587160	0.114142	NHLH1,2.p2	AK050496|Enho|69638|energy homeostasis associated
mm9_v1_chr16_-_11176350_11176485	0.11395	NHLH1,2.p2	BC027330|Zc3h7a|106205|zinc finger CCCH type containing 7 A	BC029320|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK150952|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK028438|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK040507|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK166876|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK167758|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK139351|Zc3h7a|106205|zinc finger CCCH type containing 7 A	AK161148|Zc3h7a|106205|zinc finger CCCH type containing 7 A	NM_145931|Zc3h7a|106205|zinc finger CCCH type containing 7 A
mm9_v1_chr17_+_34324496_34324509	0.113918	NHLH1,2.p2	AK153890|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	AK166046|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	AK167485|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	NM_001161730|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	NM_013683|Tap1|21354|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr6_+_124989841_124989878	0.113613	NHLH1,2.p2	AK046126|Ing4|28019|inhibitor of growth family, member 4	AK050522|Ing4|28019|inhibitor of growth family, member 4	AK031633|Ing4|28019|inhibitor of growth family, member 4	AK002821|Ing4|28019|inhibitor of growth family, member 4	AK009267|Ing4|28019|inhibitor of growth family, member 4	NM_133345|Ing4|28019|inhibitor of growth family, member 4	BC009127|Ing4|28019|inhibitor of growth family, member 4	AY035880|Ing4|28019|inhibitor of growth family, member 4	AY035881|Ing4|28019|inhibitor of growth family, member 4	AY036107|Ing4|28019|inhibitor of growth family, member 4
mm9_v1_chr1_+_57434454_57434500	0.11358	NHLH1,2.p2	NM_028546|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr11_+_4035162_4035238	0.113486	NHLH1,2.p2	NM_027859|Rnf215|71673|ring finger protein 215	AK154140|Rnf215|71673|ring finger protein 215	AK002414|Rnf215|71673|ring finger protein 215	AK047194|Rnf215|71673|ring finger protein 215	BC115907|Rnf215|71673|ring finger protein 215	BC115908|Rnf215|71673|ring finger protein 215	BC103627|Rnf215|71673|ring finger protein 215
mm9_v1_chr2_-_165981085_165981115	0.113182	NHLH1,2.p2	AK165183|Sulf2|72043|sulfatase 2	AK028874|Sulf2|72043|sulfatase 2	AK008108|Sulf2|72043|sulfatase 2	AK036685|Sulf2|72043|sulfatase 2
mm9_v1_chr17_-_34424623_34424771	0.113174	NHLH1,2.p2	AF065910|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AF065911|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M11356|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M11357|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M11358|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	K01924|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	K01922|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AF119253|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AF119254|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	X52643|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AY452201|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC019721|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	NM_010378|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK154000|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC031711|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	K01923|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	M21931|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	V00832|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC029620|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	BC043925|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK171383|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK002532|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK170931|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha	AK170844|H2-Aa|14960|histocompatibility 2, class II antigen A, alpha
mm9_v1_chr3_-_73512328_73512336	0.113062	NHLH1,2.p2	AK050337|Bche|12038|butyrylcholinesterase	NM_009738|Bche|12038|butyrylcholinesterase
mm9_v1_chr8_+_73051648_73051650	0.113	NHLH1,2.p2	AK153000|Fkbp8|14232|FK506 binding protein 8	AK165281|Fkbp8|14232|FK506 binding protein 8	AK146122|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr17_+_73186929_73186985	0.112841	NHLH1,2.p2	BC085109|Ypel5|383295|yippee-like 5 (Drosophila)
mm9_v1_chr17_+_33980030_33980035	0.112794	NHLH1,2.p2	AK078151|Cd320|54219|CD320 antigen	AK088189|Cd320|54219|CD320 antigen	NM_019421|Cd320|54219|CD320 antigen
mm9_v1_chr12_+_73542852_73542935	0.112504	NHLH1,2.p2	AK029802|Lrrc9|78257|leucine rich repeat containing 9	NM_001142728|Lrrc9|78257|leucine rich repeat containing 9	NM_030070|Lrrc9|78257|leucine rich repeat containing 9	AK019545|Lrrc9|78257|leucine rich repeat containing 9	AK015292|Lrrc9|78257|leucine rich repeat containing 9
mm9_v1_chr9_+_121628357_121628391	0.112503	NHLH1,2.p2	AK088056|Nktr|18087|natural killer tumor recognition sequence	AK144214|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr13_+_9275741_9275783	0.112498	NHLH1,2.p2	NM_001081426|Dip2c|208440|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm9_v1_chr17_-_24670527_24670832	0.112408	NHLH1,2.p2	AB232621|Rab26|328778|RAB26, member RAS oncogene family	BC094931|Rab26|328778|RAB26, member RAS oncogene family	AK043912|Rab26|328778|RAB26, member RAS oncogene family	AK080607|Rab26|328778|RAB26, member RAS oncogene family	NM_177375|Rab26|328778|RAB26, member RAS oncogene family	BC118018|Rab26|328778|RAB26, member RAS oncogene family
mm9_v1_chr8_-_108020769_108020996	0.111928	NHLH1,2.p2	AK038593|Zdhhc1|70796|zinc finger, DHHC domain containing 1	NM_175160|Zdhhc1|70796|zinc finger, DHHC domain containing 1
mm9_v1_chr19_-_41459518_41459628	0.111781	NHLH1,2.p2	BC113141|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AF293806|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	NM_031376|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK087295|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK154326|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK171021|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK170130|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK170925|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1	AK089785|Pik3ap1|83490|phosphoinositide-3-kinase adaptor protein 1
mm9_v1_chr10_-_80024245_80024324	0.111713	NHLH1,2.p2	BC039623|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC011438|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC069964|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC054843|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC025511|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK173108|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK012127|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK087016|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	BC052424|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	AK144769|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)	NM_025852|Rexo1|66932|REX1, RNA exonuclease 1 homolog (S. cerevisiae)
mm9_v1_chr15_-_12669677_12669687	0.110935	NHLH1,2.p2	AK159017|Pdzd2|68070|PDZ domain containing 2
mm9_v1_chr4_-_144784874_144784941	0.110856	NHLH1,2.p2	BC031434|Vps13d|230895|vacuolar protein sorting 13 D (yeast)	AK171861|Vps13d|230895|vacuolar protein sorting 13 D (yeast)
mm9_v1_chr4_+_108673212_108673409	0.110812	NHLH1,2.p2	AK166470|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	BC036128|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	BC026832|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	AK031548|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1	NM_146150|Nrd1|230598|nardilysin, N-arginine dibasic convertase, NRD convertase 1
mm9_v1_chr15_-_88953516_88953579	0.110765	NHLH1,2.p2	AK052441|Tubgcp6|328580|tubulin, gamma complex associated protein 6	AK129420|Tubgcp6|328580|tubulin, gamma complex associated protein 6	NM_001163319|Tubgcp6|328580|tubulin, gamma complex associated protein 6
mm9_v1_chr11_+_105945892_105945931	0.110702	NHLH1,2.p2	AK220450|Map3k3|26406|mitogen-activated protein kinase kinase kinase 3	U43187|Map3k3|26406|mitogen-activated protein kinase kinase kinase 3	AK137127|Map3k3|26406|mitogen-activated protein kinase kinase kinase 3
mm9_v1_chr11_-_78311204_78311255	0.109679	NHLH1,2.p2	BC058534|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	BC080850|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_001168521|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1	NM_172795|Sarm1|237868|sterile alpha and HEAT/Armadillo motif containing 1
mm9_v1_chr2_+_75497282_75497379	0.109605	NHLH1,2.p2	NM_053263|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_146130|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	NM_198090|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK133860|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK010481|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC038364|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AK169663|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AB201711|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC057655|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC062198|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	AF463524|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116250|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC116251|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC157904|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC157919|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158038|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC158074|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC172011|Gm6793|627828|heterogeneous nuclear ribonucleoprotein A3 pseudogene	BC023908|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3	BC064824|Hnrnpa3|229279|heterogeneous nuclear ribonucleoprotein A3
mm9_v1_chrX_+_133276377_133276400	0.109565	NHLH1,2.p2	AK160692|BC065397|436230|cDNA sequence BC065397
mm9_v1_chr17_-_46290499_46290503	0.109541	NHLH1,2.p2	AK156569|Mad2l1bp|66591|MAD2L1 binding protein	NM_025649|Mad2l1bp|66591|MAD2L1 binding protein
mm9_v1_chr5_+_142877515_142877558	0.109132	NHLH1,2.p2	AK144418|Foxk1|17425|forkhead box K1
mm9_v1_chr5_-_140212063_140212302	0.109088	NHLH1,2.p2	AK220308|Micall2|231830|MICAL-like 2	AK165558|Micall2|231830|MICAL-like 2	AB182579|Micall2|231830|MICAL-like 2	AK044547|Micall2|231830|MICAL-like 2	AK085948|Micall2|231830|MICAL-like 2	AK164043|Micall2|231830|MICAL-like 2	AK151086|Micall2|231830|MICAL-like 2	NM_174850|Micall2|231830|MICAL-like 2
mm9_v1_chr11_-_98448496_98448592	0.109019	NHLH1,2.p2	BC046594|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK087497|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK012718|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK154085|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	AK009621|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)	NM_025661|Ormdl3|66612|ORM1-like 3 (S. cerevisiae)
mm9_v1_chr4_-_132313025_132313152	0.108984	NHLH1,2.p2	AK166253|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	BC009087|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	NM_133888|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B	AK154599|Smpdl3b|100340|sphingomyelin phosphodiesterase, acid-like 3B
mm9_v1_chr1_-_186669744_186669758	0.108791	NHLH1,2.p2	AK013440|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2
mm9_v1_chr5_+_137960107_137960139	0.108541	NHLH1,2.p2	AY176042|Gigyf1|57330|GRB10 interacting GYF protein 1	NM_031408|Gigyf1|57330|GRB10 interacting GYF protein 1	BC052875|Gigyf1|57330|GRB10 interacting GYF protein 1
mm9_v1_chr9_-_90165508_90165664	0.108468	NHLH1,2.p2	AK089175|Tbc1d2b|67016|TBC1 domain family, member 2B	AK129273|Tbc1d2b|67016|TBC1 domain family, member 2B	AK156788|Tbc1d2b|67016|TBC1 domain family, member 2B	NM_194334|Tbc1d2b|67016|TBC1 domain family, member 2B	AK148382|Tbc1d2b|67016|TBC1 domain family, member 2B
mm9_v1_chr16_-_85550617_85550674	0.108324	NHLH1,2.p2	BC099957|Cyyr1|224405|cysteine and tyrosine-rich protein 1	NM_144853|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK031840|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AY061854|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK171936|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK163137|Cyyr1|224405|cysteine and tyrosine-rich protein 1	AK158088|Cyyr1|224405|cysteine and tyrosine-rich protein 1
mm9_v1_chr12_+_106270857_106270981	0.107976	NHLH1,2.p2	BC050937|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	BC058371|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK009158|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK013761|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	NM_028419|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	AK050883|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)	DQ083330|Glrx5|73046|glutaredoxin 5 homolog (S. cerevisiae)
mm9_v1_chr2_-_25052245_25052332	0.10786	NHLH1,2.p2	BC013092|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	AK155540|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene	NM_146115|A830007P12Rik|227612|RIKEN cDNA A830007P12 gene
mm9_v1_chr5_-_135164426_135164540	0.107817	NHLH1,2.p2	BC063768|Limk1|16885|LIM-domain containing, protein kinase	AK141813|Limk1|16885|LIM-domain containing, protein kinase	AK164484|Limk1|16885|LIM-domain containing, protein kinase	U15159|Limk1|16885|LIM-domain containing, protein kinase	NM_010717|Limk1|16885|LIM-domain containing, protein kinase	U14166|Limk1|16885|LIM-domain containing, protein kinase
mm9_v1_chr12_+_111685516_111685575	0.107763	NHLH1,2.p2	AK129042|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform	AK161855|Ppp2r5c|26931|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm9_v1_chr17_+_33947466_33947491	0.107636	NHLH1,2.p2	AK002623|Kank3|80880|KN motif and ankyrin repeat domains 3	AK132011|Kank3|80880|KN motif and ankyrin repeat domains 3	BC061055|Kank3|80880|KN motif and ankyrin repeat domains 3	NM_030697|Kank3|80880|KN motif and ankyrin repeat domains 3	BC037741|Kank3|80880|KN motif and ankyrin repeat domains 3
mm9_v1_chr11_-_98636511_98636521	0.107502	NHLH1,2.p2	AF291821|Nr1d1|217166|nuclear receptor subfamily 1, group D, member 1
mm9_v1_chr17_-_36115915_36115943	0.107156	NHLH1,2.p2	BC016636|Prr3|75210|proline-rich polypeptide 3
mm9_v1_chr4_-_131394135_131394216	0.106966	NHLH1,2.p2	BC080736|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	BC048694|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK052720|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	D88187|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	AK148515|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_001083119|Ptpru|19273|protein tyrosine phosphatase, receptor type, U	NM_011214|Ptpru|19273|protein tyrosine phosphatase, receptor type, U
mm9_v1_chr11_-_53705099_53705188	0.106949	NHLH1,2.p2	AB015800|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	AF111425|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	AF110417|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	BC031118|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	AK167451|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5
mm9_v1_chr6_-_100237390_100237463	0.106348	NHLH1,2.p2	AK033024|Rybp|56353|RING1 and YY1 binding protein	AF101779|Rybp|56353|RING1 and YY1 binding protein	BC080287|Rybp|56353|RING1 and YY1 binding protein
mm9_v1_chr15_+_54943878_54943952	0.106269	NHLH1,2.p2	BC004774|Deptor|97998|DEP domain containing MTOR-interacting protein
mm9_v1_chr14_-_51550327_51550600	0.106244	NHLH1,2.p2	BC049945|Tmem55b|219024|transmembrane protein 55b	BC039161|Tmem55b|219024|transmembrane protein 55b	BC058171|Tmem55b|219024|transmembrane protein 55b	BC106163|Tmem55b|219024|transmembrane protein 55b	AK152640|Tmem55b|219024|transmembrane protein 55b	AK152658|Tmem55b|219024|transmembrane protein 55b	AK144251|Tmem55b|219024|transmembrane protein 55b	NM_001033271|Tmem55b|219024|transmembrane protein 55b	AK159641|Tmem55b|219024|transmembrane protein 55b	AK169026|Tmem55b|219024|transmembrane protein 55b	BC027355|Tmem55b|219024|transmembrane protein 55b
mm9_v1_chr17_-_57184507_57184537	0.105919	NHLH1,2.p2	BC060049|Slc25a23|66972|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm9_v1_chr11_-_100565382_100565591	0.105895	NHLH1,2.p2	AF316999|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	BC029209|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK153342|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	AK021012|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58	NM_030150|Dhx58|80861|DEXH (Asp-Glu-X-His) box polypeptide 58
mm9_v1_chr6_-_134582365_134582505	0.105795	NHLH1,2.p2	BC039930|Mansc1|67729|MANSC domain containing 1	AK046837|Mansc1|67729|MANSC domain containing 1	AK018635|Mansc1|67729|MANSC domain containing 1	AK002644|Mansc1|67729|MANSC domain containing 1	AK033526|Mansc1|67729|MANSC domain containing 1	AK018660|Mansc1|67729|MANSC domain containing 1	AK171842|Mansc1|67729|MANSC domain containing 1	AK033557|Mansc1|67729|MANSC domain containing 1	NM_026345|Mansc1|67729|MANSC domain containing 1
mm9_v1_chr10_-_13588578_13588812	0.105429	NHLH1,2.p2	AK008210|Aig1|66253|androgen-induced 1	NM_025446|Aig1|66253|androgen-induced 1	AK162306|Aig1|66253|androgen-induced 1	AK005332|Aig1|66253|androgen-induced 1	AK084050|Aig1|66253|androgen-induced 1	BC035305|Aig1|66253|androgen-induced 1
mm9_v1_chr16_+_97578333_97578399	0.104871	NHLH1,2.p2	NM_019517|Bace2|56175|beta-site APP-cleaving enzyme 2	AK052309|Bace2|56175|beta-site APP-cleaving enzyme 2	AK078770|Bace2|56175|beta-site APP-cleaving enzyme 2	BC120773|Bace2|56175|beta-site APP-cleaving enzyme 2	BC131947|Bace2|56175|beta-site APP-cleaving enzyme 2	AF216310|Bace2|56175|beta-site APP-cleaving enzyme 2	AK165036|Bace2|56175|beta-site APP-cleaving enzyme 2
mm9_v1_chr17_+_34341417_34341460	0.10475	NHLH1,2.p2	NM_011530|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	AK159200|Tap2|21355|transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)
mm9_v1_chr2_+_158235611_158235613	0.104284	NHLH1,2.p2	AK083733|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr3_+_151100845_151100914	0.104107	NHLH1,2.p2	NM_133222|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1	AF385682|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1	BC017134|Eltd1|170757|EGF, latrophilin seven transmembrane domain containing 1
mm9_v1_chr6_+_48597232_48597434	0.104104	NHLH1,2.p2	AK134199|Gimap8|243374|GTPase, IMAP family member 8	NM_001077410|Gimap8|243374|GTPase, IMAP family member 8	AB178029|Gimap8|243374|GTPase, IMAP family member 8	AK155985|Gimap8|243374|GTPase, IMAP family member 8	NM_212486|Gimap8|243374|GTPase, IMAP family member 8	BC137943|Gimap8|243374|GTPase, IMAP family member 8	BC137944|Gimap8|243374|GTPase, IMAP family member 8	AJ617674|Gimap8|243374|GTPase, IMAP family member 8
mm9_v1_chr6_-_124807733_124807764	0.104087	NHLH1,2.p2	AK140962|Leprel2|14789|leprecan-like 2
mm9_v1_chr6_+_49269351_49269403	0.104077	NHLH1,2.p2	AK018135|Ccdc126|57895|coiled-coil domain containing 126	NM_175098|Ccdc126|57895|coiled-coil domain containing 126	BC117837|Ccdc126|57895|coiled-coil domain containing 126
mm9_v1_chr14_-_11994524_11994548	0.103532	NHLH1,2.p2	AF055573|Fhit|14198|fragile histidine triad gene	NM_010210|Fhit|14198|fragile histidine triad gene	AF047699|Fhit|14198|fragile histidine triad gene
mm9_v1_chr11_+_101107635_101107647	0.10338	NHLH1,2.p2	NM_019444|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr5_-_122286761_122286840	0.103106	NHLH1,2.p2	BC006759|Sh2b3|16923|SH2B adaptor protein 3	NM_008507|Sh2b3|16923|SH2B adaptor protein 3	AK157297|Sh2b3|16923|SH2B adaptor protein 3	AK172551|Sh2b3|16923|SH2B adaptor protein 3	AK172573|Sh2b3|16923|SH2B adaptor protein 3	AK156499|Sh2b3|16923|SH2B adaptor protein 3
mm9_v1_chr5_+_121902672_121902717	0.102821	NHLH1,2.p2	AK015103|Tmem116|77462|transmembrane protein 116	AK021099|Tmem116|77462|transmembrane protein 116	NM_029912|Tmem116|77462|transmembrane protein 116
mm9_v1_chr1_-_43884552_43884659	0.102618	NHLH1,2.p2	AF399958|Uxs1|67883|UDP-glucuronate decarboxylase 1	NM_026430|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK005536|Uxs1|67883|UDP-glucuronate decarboxylase 1	BC037049|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK075806|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK152376|Uxs1|67883|UDP-glucuronate decarboxylase 1	AK076166|Uxs1|67883|UDP-glucuronate decarboxylase 1
mm9_v1_chr11_+_78640059_78640096	0.102597	NHLH1,2.p2	AK007467|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	AK144380|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene	NM_001076681|1810012P15Rik|66274|RIKEN cDNA 1810012P15 gene
mm9_v1_chr15_+_88890519_88890533	0.102514	NHLH1,2.p2	DQ093579|Panx2|406218|pannexin 2
mm9_v1_chr17_-_34027488_34027531	0.102499	NHLH1,2.p2	BC003753|Kifc1|100042970|kinesin family member C1	D49544|Kifc1|100042970|kinesin family member C1	BC057162|Kifc1|100042970|kinesin family member C1	BC100328|Kifc1|100042970|kinesin family member C1
mm9_v1_chr9_+_111174321_111174442	0.102345	NHLH1,2.p2	BC018474|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	NM_175266|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK032284|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK043518|Epm2aip1|77781|EPM2A (laforin) interacting protein 1	AK030084|Epm2aip1|77781|EPM2A (laforin) interacting protein 1
mm9_v1_chr11_-_43496158_43496178	0.102168	NHLH1,2.p2	
mm9_v1_chr4_+_8618067_8618067	0.102149	NHLH1,2.p2	AK171051|Chd7|320790|chromodomain helicase DNA binding protein 7	NM_001081417|Chd7|320790|chromodomain helicase DNA binding protein 7
mm9_v1_chr4_-_41261815_41261871	0.101994	NHLH1,2.p2	AK087517|Dcaf12|68970|DDB1 and CUL4 associated factor 12	BC023852|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK083369|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK031089|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr2_-_5635228_5635384	0.10192	NHLH1,2.p2	AK052401|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	BC141413|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID	BC141414|Camk1d|227541|calcium/calmodulin-dependent protein kinase ID
mm9_v1_chr4_-_41261874_41261885	0.101469	NHLH1,2.p2	AK005099|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK090028|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK030173|Dcaf12|68970|DDB1 and CUL4 associated factor 12	AK143635|Dcaf12|68970|DDB1 and CUL4 associated factor 12
mm9_v1_chr2_+_31007833_31007940	0.101028	NHLH1,2.p2	NM_178760|Gpr107|277463|G protein-coupled receptor 107	AK082237|Gpr107|277463|G protein-coupled receptor 107	AK030433|Gpr107|277463|G protein-coupled receptor 107	AK154530|Gpr107|277463|G protein-coupled receptor 107	AK083025|Gpr107|277463|G protein-coupled receptor 107	AK088544|Gpr107|277463|G protein-coupled receptor 107	AK034815|Gpr107|277463|G protein-coupled receptor 107	BC117900|Gpr107|277463|G protein-coupled receptor 107	BC117901|Gpr107|277463|G protein-coupled receptor 107	BC092231|Gpr107|277463|G protein-coupled receptor 107	AK036987|Gpr107|277463|G protein-coupled receptor 107	AK142454|Gpr107|277463|G protein-coupled receptor 107	AK129407|Gpr107|277463|G protein-coupled receptor 107
mm9_v1_chr10_+_62442999_62443009	0.100868	NHLH1,2.p2	AK011847|Rufy2|70432|RUN and FYVE domain-containing 2	BC017645|Rufy2|70432|RUN and FYVE domain-containing 2	AK173195|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr2_-_48804794_48804803	0.100821	NHLH1,2.p2	AK145454|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr9_-_79640876_79641130	0.100805	NHLH1,2.p2	AK178013|Tmem30a|69981|transmembrane protein 30A	AK192822|Tmem30a|69981|transmembrane protein 30A	AK203327|Tmem30a|69981|transmembrane protein 30A	AK200429|Tmem30a|69981|transmembrane protein 30A	BC018367|Tmem30a|69981|transmembrane protein 30A	AK008408|Tmem30a|69981|transmembrane protein 30A	BC018491|Tmem30a|69981|transmembrane protein 30A	AK161096|Tmem30a|69981|transmembrane protein 30A
mm9_v1_chr10_+_36226801_36226831	0.100745	NHLH1,2.p2	BC079867|Hs3st5|319415|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm9_v1_chr15_-_91403685_91403705	0.10062	NHLH1,2.p2	AK147341|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13	NM_001033633|Slc2a13|239606|solute carrier family 2 (facilitated glucose transporter), member 13
mm9_v1_chr5_-_31829101_31829134	0.100471	NHLH1,2.p2	AK047063|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like	AK144989|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like	NM_028150|Supt7l|72195|suppressor of Ty 7 (S. cerevisiae)-like
mm9_v1_chr12_+_62624153_62624158	0.100408	NHLH1,2.p2	AK162923|Lrfn5|238205|leucine rich repeat and fibronectin type III domain containing 5
mm9_v1_chr16_-_85173764_85173823	0.100168	NHLH1,2.p2	AK218334|App|11820|amyloid beta (A4) precursor protein	AY267348|App|11820|amyloid beta (A4) precursor protein	AK148439|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr2_+_112102082_112102129	0.100095	NHLH1,2.p2	AK004120|Nop10|66181|NOP10 ribonucleoprotein homolog (yeast)	AK012875|Nop10|66181|NOP10 ribonucleoprotein homolog (yeast)	NM_025403|Nop10|66181|NOP10 ribonucleoprotein homolog (yeast)	BC028497|Nop10|66181|NOP10 ribonucleoprotein homolog (yeast)
mm9_v1_chr6_+_92041408_92041534	0.10005	NHLH1,2.p2	NM_011630|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2	AK157305|Nr2c2|22026|nuclear receptor subfamily 2, group C, member 2
mm9_v1_chr7_-_74517624_74517743	0.0997038	NHLH1,2.p2	AK132678|Mef2a|17258|myocyte enhancer factor 2A	BC019116|Mef2a|17258|myocyte enhancer factor 2A	BC096598|Mef2a|17258|myocyte enhancer factor 2A	BC061128|Mef2a|17258|myocyte enhancer factor 2A	AK052385|Mef2a|17258|myocyte enhancer factor 2A	AK153751|Mef2a|17258|myocyte enhancer factor 2A	NM_001033713|Mef2a|17258|myocyte enhancer factor 2A
mm9_v1_chr6_-_121060111_121060174	0.0995879	NHLH1,2.p2	AK122497|Mical3|194401|microtubule associated monoxygenase, calponin and LIM domain containing 3
mm9_v1_chr4_+_111087610_111087629	0.0995589	NHLH1,2.p2	AK075885|Bend5|67621|BEN domain containing 5	NM_026279|Bend5|67621|BEN domain containing 5	AK014057|Bend5|67621|BEN domain containing 5
mm9_v1_chr13_-_96145297_96145325	0.0993739	NHLH1,2.p2	AK132575|Aggf1|66549|angiogenic factor with G patch and FHA domains 1
mm9_v1_chrX_-_104035877_104035981	0.0992382	NHLH1,2.p2	AK084983|Zcchc5|213436|zinc finger, CCHC domain containing 5	BC064821|Zcchc5|213436|zinc finger, CCHC domain containing 5	NM_199468|Zcchc5|213436|zinc finger, CCHC domain containing 5
mm9_v1_chr7_-_117103903_117104016	0.0991206	NHLH1,2.p2	AJ245569|Dennd5a|19347|DENN/MADD domain containing 5A	BC060230|Dennd5a|19347|DENN/MADD domain containing 5A	NM_021494|Dennd5a|19347|DENN/MADD domain containing 5A
mm9_v1_chr5_+_136363810_136363893	0.0988212	NHLH1,2.p2	BC018257|Hspb1|15507|heat shock protein 1	AK003119|Hspb1|15507|heat shock protein 1	AK168927|Hspb1|15507|heat shock protein 1	AK010663|Hspb1|15507|heat shock protein 1	X14686|Hspb1|15507|heat shock protein 1	BC090388|Hspb1|15507|heat shock protein 1	BC099463|Hspb1|15507|heat shock protein 1
mm9_v1_chr1_-_157883424_157883442	0.098758	NHLH1,2.p2	BC010841|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr17_+_3114963_3115105	0.0987563	NHLH1,2.p2	AK157957|Scaf8|106583|SR-related CTD-associated factor 8	AK042381|Scaf8|106583|SR-related CTD-associated factor 8	NM_134123|Scaf8|106583|SR-related CTD-associated factor 8	BC075621|Scaf8|106583|SR-related CTD-associated factor 8	AK122451|Scaf8|106583|SR-related CTD-associated factor 8
mm9_v1_chr1_+_157883131_157883262	0.0987268	NHLH1,2.p2	NM_001160182|Tor1aip2|240832|torsin A interacting protein 2	BC060258|Tor1aip2|240832|torsin A interacting protein 2
mm9_v1_chr9_-_115152895_115153139	0.0980897	NHLH1,2.p2	AK213927|Stt3b|68292|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm9_v1_chr10_-_41023009_41023070	0.097895	NHLH1,2.p2	AK169881|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172341|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK172130|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK155392|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC031887|Fig4|103199|FIG4 homolog (S. cerevisiae)	AK041196|Fig4|103199|FIG4 homolog (S. cerevisiae)	BC015295|Fig4|103199|FIG4 homolog (S. cerevisiae)	NM_133999|Fig4|103199|FIG4 homolog (S. cerevisiae)
mm9_v1_chr11_+_97524725_97524725	0.0978791	NHLH1,2.p2	NM_139311|Mllt6|246198|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm9_v1_chr9_-_45762994_45763069	0.0976169	NHLH1,2.p2	BC051101|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr4_-_134409254_134409295	0.09734	NHLH1,2.p2	AY846873|Tmem57|66146|transmembrane protein 57	AY846874|Tmem57|66146|transmembrane protein 57	NM_025382|Tmem57|66146|transmembrane protein 57
mm9_v1_chr7_-_133645796_133645958	0.0969635	NHLH1,2.p2	AK158626|Atxn2l|233871|ataxin 2-like	AK168745|Atxn2l|233871|ataxin 2-like
mm9_v1_chr7_-_149561853_149562071	0.0968614	NHLH1,2.p2	AK177774|Ctsd|13033|cathepsin D
mm9_v1_chr5_+_139728268_139728480	0.096814	NHLH1,2.p2	NM_026269|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)	AK003551|Get4|67604|golgi to ER traffic protein 4 homolog (S. cerevisiae)
mm9_v1_chr15_-_83197706_83197713	0.0968038	NHLH1,2.p2	AK132681|1700001L05Rik|69291|RIKEN cDNA 1700001L05 gene	BC099567|1700001L05Rik|69291|RIKEN cDNA 1700001L05 gene
mm9_v1_chr2_+_113167862_113167938	0.0965731	NHLH1,2.p2	NM_001043322|Fmn1|14260|formin 1	NM_010230|Fmn1|14260|formin 1	AK135758|Fmn1|14260|formin 1	X53599|Fmn1|14260|formin 1
mm9_v1_chr15_-_38230397_38230491	0.0965407	NHLH1,2.p2	BC003316|Klf10|21847|Kruppel-like factor 10	Z36270|Klf10|21847|Kruppel-like factor 10	AK154719|Klf10|21847|Kruppel-like factor 10	AF064088|Klf10|21847|Kruppel-like factor 10	AK043433|Klf10|21847|Kruppel-like factor 10	AK079679|Klf10|21847|Kruppel-like factor 10	AF049879|Klf10|21847|Kruppel-like factor 10	NM_013692|Klf10|21847|Kruppel-like factor 10	AK004906|Klf10|21847|Kruppel-like factor 10
mm9_v1_chr7_+_75097142_75097267	0.0963265	NHLH1,2.p2	NM_010513|Igf1r|16001|insulin-like growth factor I receptor
mm9_v1_chr9_-_113617224_113617390	0.0962928	NHLH1,2.p2	AJ005073|Pdcd6ip|18571|programmed cell death 6 interacting protein	AJ005074|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC051123|Pdcd6ip|18571|programmed cell death 6 interacting protein	BC026823|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK167574|Pdcd6ip|18571|programmed cell death 6 interacting protein	AF119955|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK029827|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK129340|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK147736|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK031256|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK033943|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK145893|Pdcd6ip|18571|programmed cell death 6 interacting protein	AK169704|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164677|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_001164678|Pdcd6ip|18571|programmed cell death 6 interacting protein	NM_011052|Pdcd6ip|18571|programmed cell death 6 interacting protein
mm9_v1_chr10_+_62443021_62443063	0.0962591	NHLH1,2.p2	BC137736|Rufy2|70432|RUN and FYVE domain-containing 2	BC137737|Rufy2|70432|RUN and FYVE domain-containing 2	BC038265|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr10_+_51953390_51953445	0.0961834	NHLH1,2.p2	AK016485|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	NM_025705|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1	AK157211|Dcbld1|66686|discoidin, CUB and LCCL domain containing 1
mm9_v1_chr19_+_16207300_16207320	0.0961799	NHLH1,2.p2	AK147393|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide	NM_008139|Gnaq|14682|guanine nucleotide binding protein, alpha q polypeptide
mm9_v1_chrX_-_16394443_16394525	0.096146	NHLH1,2.p2	AK031833|Maob|109731|monoamine oxidase B	BC113182|Maob|109731|monoamine oxidase B	BC113788|Maob|109731|monoamine oxidase B	AK054050|Maob|109731|monoamine oxidase B	NM_172778|Maob|109731|monoamine oxidase B
mm9_v1_chr12_-_99497200_99497260	0.0960103	NHLH1,2.p2	AK020833|Galc|14420|galactosylceramidase
mm9_v1_chr8_+_125778094_125778211	0.0959094	NHLH1,2.p2	AK133363|Zfp276|57247|zinc finger protein (C2H2 type) 276	NM_020497|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK028939|Zfp276|57247|zinc finger protein (C2H2 type) 276	AK043258|Zfp276|57247|zinc finger protein (C2H2 type) 276	BC066056|Zfp276|57247|zinc finger protein (C2H2 type) 276
mm9_v1_chr19_-_7061867_7061910	0.0958123	NHLH1,2.p2	U43837|Vegfb|22340|vascular endothelial growth factor B	AK187930|Vegfb|22340|vascular endothelial growth factor B	AK184156|Vegfb|22340|vascular endothelial growth factor B	AK184635|Vegfb|22340|vascular endothelial growth factor B
mm9_v1_chr2_+_26766333_26766340	0.0957929	NHLH1,2.p2	BC029992|Rpl7a|27176|ribosomal protein L7A	BC080663|Rpl7a|27176|ribosomal protein L7A	BC080669|Rpl7a|27176|ribosomal protein L7A	BC084678|Rpl7a|27176|ribosomal protein L7A	BC091769|Rpl7a|27176|ribosomal protein L7A	BC065176|Rpl7a|27176|ribosomal protein L7A
mm9_v1_chr17_+_25864702_25864739	0.0956398	NHLH1,2.p2	BC018186|Rpusd1|106707|RNA pseudouridylate synthase domain containing 1
mm9_v1_chr9_-_65732843_65732979	0.0955781	NHLH1,2.p2	AK078393|Trip4|56404|thyroid hormone receptor interactor 4	AK150752|Trip4|56404|thyroid hormone receptor interactor 4	BC021316|Trip4|56404|thyroid hormone receptor interactor 4	AK039024|Trip4|56404|thyroid hormone receptor interactor 4	AK146298|Trip4|56404|thyroid hormone receptor interactor 4	NM_001170907|Trip4|56404|thyroid hormone receptor interactor 4
mm9_v1_chr10_+_20672352_20672469	0.0955727	NHLH1,2.p2	AK080373|Ahi1|52906|Abelson helper integration site 1	NM_026203|Ahi1|52906|Abelson helper integration site 1	AK005991|Ahi1|52906|Abelson helper integration site 1	AK013997|Ahi1|52906|Abelson helper integration site 1	AK019416|Ahi1|52906|Abelson helper integration site 1	BC106130|Ahi1|52906|Abelson helper integration site 1	BC065146|Ahi1|52906|Abelson helper integration site 1	AK036336|Ahi1|52906|Abelson helper integration site 1	AY133241|Ahi1|52906|Abelson helper integration site 1
mm9_v1_chr10_+_110601745_110601988	0.0955481	NHLH1,2.p2	AK037158|Osbpl8|237542|oxysterol binding protein-like 8	AK050244|Osbpl8|237542|oxysterol binding protein-like 8	NM_001003717|Osbpl8|237542|oxysterol binding protein-like 8	NM_175489|Osbpl8|237542|oxysterol binding protein-like 8
mm9_v1_chr8_+_79426245_79426406	0.0955471	NHLH1,2.p2	BC133713|Nr3c2|110784|nuclear receptor subfamily 3, group C, member 2	NM_001083906|Nr3c2|110784|nuclear receptor subfamily 3, group C, member 2
mm9_v1_chr7_-_142129892_142130112	0.0955424	NHLH1,2.p2	BC158077|Fam196a|627214|family with sequence similarity 196, member A	BC158080|Fam196a|627214|family with sequence similarity 196, member A	AK046823|Fam196a|627214|family with sequence similarity 196, member A	AK046846|Fam196a|627214|family with sequence similarity 196, member A	AK140373|Fam196a|627214|family with sequence similarity 196, member A	NM_001143802|Fam196a|627214|family with sequence similarity 196, member A
mm9_v1_chr19_+_42245036_42245077	0.0953846	NHLH1,2.p2	NM_001164531|Zfyve27|319740|zinc finger, FYVE domain containing 27	NM_177319|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr5_+_8893700_8893720	0.0951258	NHLH1,2.p2	J03398|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK144024|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	AK165484|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4	NM_008830|Abcb4|18670|ATP-binding cassette, sub-family B (MDR/TAP), member 4
mm9_v1_chr7_+_112574425_112574538	0.0951031	NHLH1,2.p2	AK053307|Cckbr|12426|cholecystokinin B receptor	AF019371|Cckbr|12426|cholecystokinin B receptor
mm9_v1_chr2_+_179777418_179777493	0.0950768	NHLH1,2.p2	AK173004|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK054560|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1	AK038669|Ss18l1|269397|synovial sarcoma translocation gene on chromosome 18-like 1
mm9_v1_chr11_-_100334076_100334121	0.095048	NHLH1,2.p2	BC111873|Klhl11|217194|kelch-like 11 (Drosophila)	AK029101|Klhl11|217194|kelch-like 11 (Drosophila)	NM_172565|Klhl11|217194|kelch-like 11 (Drosophila)
mm9_v1_chr2_+_31742800_31742863	0.0947749	NHLH1,2.p2	BC096366|Lamc3|23928|laminin gamma 3	NM_011836|Lamc3|23928|laminin gamma 3	AF079520|Lamc3|23928|laminin gamma 3	AF083372|Lamc3|23928|laminin gamma 3
mm9_v1_chr2_+_109532592_109532697	0.0946348	NHLH1,2.p2	AY057913|Bdnf|12064|brain derived neurotrophic factor	EF125673|Bdnf|12064|brain derived neurotrophic factor	NM_001048141|Bdnf|12064|brain derived neurotrophic factor
mm9_v1_chr8_+_123192124_123192244	0.0944495	NHLH1,2.p2	AK141048|Cox4nb|18117|COX4 neighbor	AK012583|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	NM_009941|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	AK150447|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	M37829|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	BC132269|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	BC132275|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	X54691|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1	AK019276|Cox4i1|12857|cytochrome c oxidase subunit IV isoform 1
mm9_v1_chr6_+_4455686_4455760	0.094311	NHLH1,2.p2	AK159212|Col1a2|12843|collagen, type I, alpha 2	AK161017|Col1a2|12843|collagen, type I, alpha 2	NM_007743|Col1a2|12843|collagen, type I, alpha 2	AK160098|Col1a2|12843|collagen, type I, alpha 2	AK160946|Col1a2|12843|collagen, type I, alpha 2	AK159578|Col1a2|12843|collagen, type I, alpha 2	AK031577|Col1a2|12843|collagen, type I, alpha 2	AK132496|Col1a2|12843|collagen, type I, alpha 2	AK157724|Col1a2|12843|collagen, type I, alpha 2	AK159408|Col1a2|12843|collagen, type I, alpha 2	AK160787|Col1a2|12843|collagen, type I, alpha 2	AK160788|Col1a2|12843|collagen, type I, alpha 2	AK160790|Col1a2|12843|collagen, type I, alpha 2	AK161605|Col1a2|12843|collagen, type I, alpha 2	AK164808|Col1a2|12843|collagen, type I, alpha 2	BC007158|Col1a2|12843|collagen, type I, alpha 2	BC042503|Col1a2|12843|collagen, type I, alpha 2	X58251|Col1a2|12843|collagen, type I, alpha 2
mm9_v1_chr10_-_62113897_62113922	0.0942038	NHLH1,2.p2	BC075714|Ddx50|94213|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	BC071265|Ddx50|94213|DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
mm9_v1_chr7_-_146374363_146374372	0.0939432	NHLH1,2.p2	BC026457|Stk32c|57740|serine/threonine kinase 32C	AK046439|Stk32c|57740|serine/threonine kinase 32C	AB041542|Stk32c|57740|serine/threonine kinase 32C
mm9_v1_chr13_+_95746298_95746380	0.0935947	NHLH1,2.p2	AK082348|Wdr41|218460|WD repeat domain 41	NM_172590|Wdr41|218460|WD repeat domain 41	AK046853|Wdr41|218460|WD repeat domain 41	AK149993|Wdr41|218460|WD repeat domain 41
mm9_v1_chr1_+_169280320_169280395	0.0933868	NHLH1,2.p2	AK132336|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK149589|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK162354|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	BC003297|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AF170919|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1	AK150093|Aldh9a1|56752|aldehyde dehydrogenase 9, subfamily A1
mm9_v1_chr4_+_137806293_137806394	0.0933411	NHLH1,2.p2	DQ832275|Sh2d5|230863|SH2 domain containing 5	NM_001099631|Sh2d5|230863|SH2 domain containing 5	BC036961|Sh2d5|230863|SH2 domain containing 5	AK032598|Sh2d5|230863|SH2 domain containing 5
mm9_v1_chr11_-_70034477_70034547	0.0932965	NHLH1,2.p2	AK028143|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	AK028759|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13	NM_172371|Slc16a13|69309|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm9_v1_chr8_+_126868529_126868828	0.0930109	NHLH1,2.p2	BC025877|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	BC039641|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	AK200523|Galnt2|108148|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm9_v1_chr13_+_12658130_12658343	0.092962	NHLH1,2.p2	AK160664|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC058721|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	NM_026184|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK004981|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AK041951|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC111900|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC112426|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145888|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	BC145890|Ero1lb|67475|ERO1-like beta (S. cerevisiae)	AF489856|Ero1lb|67475|ERO1-like beta (S. cerevisiae)
mm9_v1_chrX_+_136014905_136015005	0.0925117	NHLH1,2.p2	AK171459|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	NM_175326|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK155588|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	AK052376|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC112416|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene	BC113128|D330045A20Rik|102871|RIKEN cDNA D330045A20 gene
mm9_v1_chrX_+_133276320_133276367	0.0923117	NHLH1,2.p2	AK084423|BC065397|436230|cDNA sequence BC065397
mm9_v1_chr19_-_5093049_5093189	0.0922987	NHLH1,2.p2	AK211408|Cnih2|12794|cornichon homolog 2 (Drosophila)
mm9_v1_chr11_-_70468130_70468151	0.0919855	NHLH1,2.p2	AK011066|Pfn1|18643|profilin 1	AK152491|Pfn1|18643|profilin 1	AK160191|Pfn1|18643|profilin 1	NM_011072|Pfn1|18643|profilin 1
mm9_v1_chr14_-_55544348_55544495	0.0919405	NHLH1,2.p2	U57686|Efs|13644|embryonal Fyn-associated substrate	BC031543|Efs|13644|embryonal Fyn-associated substrate
mm9_v1_chr12_-_8505780_8505995	0.0913224	NHLH1,2.p2	AK215498|Rhob|11852|ras homolog gene family, member B	AK148834|Rhob|11852|ras homolog gene family, member B	AK184048|Rhob|11852|ras homolog gene family, member B	AK013784|Rhob|11852|ras homolog gene family, member B
mm9_v1_chr2_-_92232731_92232888	0.0912299	NHLH1,2.p2	BC072578|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK147033|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK053819|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr2_+_132607408_132607417	0.0911935	NHLH1,2.p2	BC014736|Chgb|12653|chromogranin B	X51429|Chgb|12653|chromogranin B
mm9_v1_chr3_+_96500294_96500403	0.0911698	NHLH1,2.p2	NM_146135|Pias3|229615|protein inhibitor of activated STAT 3	AK040619|Pias3|229615|protein inhibitor of activated STAT 3	AK077551|Pias3|229615|protein inhibitor of activated STAT 3	AK085503|Pias3|229615|protein inhibitor of activated STAT 3	BC023128|Pias3|229615|protein inhibitor of activated STAT 3
mm9_v1_chr17_+_64213350_64213395	0.090818	NHLH1,2.p2	AK021175|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2	AK157828|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr2_+_37631768_37631768	0.0906064	NHLH1,2.p2	NM_001163566|Crb2|241324|crumbs homolog 2 (Drosophila)
mm9_v1_chr9_-_59334089_59334191	0.0903913	NHLH1,2.p2	BC038034|Arih1|23806|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)	NM_019927|Arih1|23806|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm9_v1_chr9_+_53619341_53619344	0.0901501	NHLH1,2.p2	NM_028060|Slc35f2|72022|solute carrier family 35, member F2	BC055843|Slc35f2|72022|solute carrier family 35, member F2
mm9_v1_chr6_-_53018566_53018625	0.0901042	NHLH1,2.p2	AK043767|Jazf1|231986|JAZF zinc finger 1	AK050474|Jazf1|231986|JAZF zinc finger 1	NM_173406|Jazf1|231986|JAZF zinc finger 1
mm9_v1_chr17_+_64213326_64213348	0.0899667	NHLH1,2.p2	AK165973|Fert2|14158|fer (fms/fps related) protein kinase, testis specific 2
mm9_v1_chr19_-_57389256_57389302	0.0896762	NHLH1,2.p2	AK029371|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr8_+_74200281_74200478	0.0896131	NHLH1,2.p2	NM_001190830|Jak3|16453|Janus kinase 3	NM_010589|Jak3|16453|Janus kinase 3	AK088365|Jak3|16453|Janus kinase 3	L40172|Jak3|16453|Janus kinase 3	AK164520|Jak3|16453|Janus kinase 3	AK142178|Jak3|16453|Janus kinase 3	BC027234|Jak3|16453|Janus kinase 3	AK156646|Jak3|16453|Janus kinase 3
mm9_v1_chr19_+_17468498_17468584	0.0894097	NHLH1,2.p2	NM_019437|Rfk|54391|riboflavin kinase	AK002806|Rfk|54391|riboflavin kinase
mm9_v1_chr10_-_77632399_77632581	0.0892913	NHLH1,2.p2	BC013475|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	AK003866|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed	NM_138601|D10Jhu81e|28295|DNA segment, Chr 10, Johns Hopkins University 81 expressed
mm9_v1_chr6_-_21802514_21802514	0.089281	NHLH1,2.p2	AK050737|Tspan12|269831|tetraspanin 12	NM_173007|Tspan12|269831|tetraspanin 12
mm9_v1_chr16_-_85862579_85862641	0.0890495	NHLH1,2.p2	AK046558|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	AK164560|Adamts5|23794|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm9_v1_chr10_-_77707321_77707347	0.0886573	NHLH1,2.p2	AK154290|Trappc10|216131|trafficking protein particle complex 10
mm9_v1_chr19_+_8969711_8969726	0.0886306	NHLH1,2.p2	AK179191|Ints5|109077|integrator complex subunit 5	AK183632|Ints5|109077|integrator complex subunit 5
mm9_v1_chr12_-_111840150_111840172	0.0884752	NHLH1,2.p2	
mm9_v1_chr7_-_29941186_29941253	0.088274	NHLH1,2.p2	BC058765|Fam98c|73833|family with sequence similarity 98, member C	AK166139|Fam98c|73833|family with sequence similarity 98, member C	AK003496|Fam98c|73833|family with sequence similarity 98, member C	AK138395|Fam98c|73833|family with sequence similarity 98, member C	AK171108|Fam98c|73833|family with sequence similarity 98, member C	AK080790|Fam98c|73833|family with sequence similarity 98, member C	NM_001146023|Fam98c|73833|family with sequence similarity 98, member C
mm9_v1_chr4_-_151401740_151401801	0.0882715	NHLH1,2.p2	BC005515|Zbtb48|100090|zinc finger and BTB domain containing 48	AK027912|Zbtb48|100090|zinc finger and BTB domain containing 48	NM_133879|Zbtb48|100090|zinc finger and BTB domain containing 48
mm9_v1_chr15_-_64753721_64753861	0.0882327	NHLH1,2.p2	U85021|Adcy8|11514|adenylate cyclase 8	BC094231|Adcy8|11514|adenylate cyclase 8	AK163443|Adcy8|11514|adenylate cyclase 8	AK138244|Adcy8|11514|adenylate cyclase 8	NM_009623|Adcy8|11514|adenylate cyclase 8
mm9_v1_chr12_+_114424066_114424140	0.0881259	NHLH1,2.p2	NM_153776|Tmem121|69195|transmembrane protein 121	AK010454|Tmem121|69195|transmembrane protein 121	AF488729|Tmem121|69195|transmembrane protein 121
mm9_v1_chr8_-_107779027_107779052	0.0880907	NHLH1,2.p2	AK169360|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene	NM_178879|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene	AK032108|B3gnt9-ps|97440|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, pseudogene
mm9_v1_chr4_+_73897782_73897907	0.0878909	NHLH1,2.p2	AK173023|Kdm4c|76804|lysine (K)-specific demethylase 4C	NM_144787|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144890|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK144103|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK081769|Kdm4c|76804|lysine (K)-specific demethylase 4C	BC020180|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK048092|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK042792|Kdm4c|76804|lysine (K)-specific demethylase 4C	AK053104|Kdm4c|76804|lysine (K)-specific demethylase 4C
mm9_v1_chr9_-_51771451_51771665	0.0878004	NHLH1,2.p2	BC099518|Fdx1|14148|ferredoxin 1	BC132173|Fdx1|14148|ferredoxin 1	BC132175|Fdx1|14148|ferredoxin 1	D43690|Fdx1|14148|ferredoxin 1	D43689|Fdx1|14148|ferredoxin 1	NM_007996|Fdx1|14148|ferredoxin 1	L29123|Fdx1|14148|ferredoxin 1	AK004879|Fdx1|14148|ferredoxin 1	AK148115|Fdx1|14148|ferredoxin 1
mm9_v1_chr11_-_94900779_94900799	0.087658	NHLH1,2.p2	AK181188|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK192357|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK194016|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK216417|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2	AK218086|Pdk2|18604|pyruvate dehydrogenase kinase, isoenzyme 2
mm9_v1_chr4_+_138748812_138748922	0.087618	NHLH1,2.p2	AK159390|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK160082|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK156778|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_009798|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	BC002053|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153367|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK153394|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	AK168738|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	NM_001037761|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10406|Capzb|12345|capping protein (actin filament) muscle Z-line, beta	U10407|Capzb|12345|capping protein (actin filament) muscle Z-line, beta
mm9_v1_chr4_+_5571316_5571381	0.087412	NHLH1,2.p2	AK159054|Fam110b|242297|family with sequence similarity 110, member B	AK163184|Fam110b|242297|family with sequence similarity 110, member B	AK052596|Fam110b|242297|family with sequence similarity 110, member B	NM_173426|Fam110b|242297|family with sequence similarity 110, member B	AK005911|Fam110b|242297|family with sequence similarity 110, member B
mm9_v1_chr8_+_125589407_125589408	0.0872786	NHLH1,2.p2	AK145540|Spg7|234847|spastic paraplegia 7 homolog (human)	AK171647|Spg7|234847|spastic paraplegia 7 homolog (human)	NM_153176|Spg7|234847|spastic paraplegia 7 homolog (human)
mm9_v1_chr4_+_99382314_99382380	0.0872536	NHLH1,2.p2	NM_001081264|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK087075|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	BC050854|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK036792|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK157903|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK087630|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	AK171887|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)	BC080867|Alg6|320438|asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3,-glucosyltransferase)
mm9_v1_chr16_-_93603971_93604059	0.0870113	NHLH1,2.p2	BC029101|Setd4|224440|SET domain containing 4	AY037804|Setd4|224440|SET domain containing 4	NM_145482|Setd4|224440|SET domain containing 4
mm9_v1_chr10_-_117147722_117147744	0.0870053	NHLH1,2.p2	X58876|Mdm2|17246|transformed mouse 3T3 cell double minute 2	BC050902|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK004881|Mdm2|17246|transformed mouse 3T3 cell double minute 2	AK088638|Mdm2|17246|transformed mouse 3T3 cell double minute 2
mm9_v1_chr16_+_92498378_92498391	0.0869746	NHLH1,2.p2	BC075706|Clic6|209195|chloride intracellular channel 6	AK077599|Clic6|209195|chloride intracellular channel 6	NM_172469|Clic6|209195|chloride intracellular channel 6
mm9_v1_chr5_+_106161255_106161339	0.0868778	NHLH1,2.p2	AK167985|Lrrc8d|231549|leucine rich repeat containing 8D	AK181633|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr8_-_128998964_128998964	0.0867226	NHLH1,2.p2	NM_001159907|Tarbp1|212728|TAR (HIV-1) RNA binding protein 1
mm9_v1_chr2_+_30219752_30219824	0.0866962	NHLH1,2.p2	AK165996|Fam73b|108958|family with sequence similarity 73, member B	AK154200|Fam73b|108958|family with sequence similarity 73, member B	AK140122|Fam73b|108958|family with sequence similarity 73, member B	AK040713|Fam73b|108958|family with sequence similarity 73, member B	AK077618|Fam73b|108958|family with sequence similarity 73, member B
mm9_v1_chr2_+_167514489_167514504	0.08649	NHLH1,2.p2	M61007|Cebpb|12608|CCAAT/enhancer binding protein (C/EBP), beta
mm9_v1_chr7_+_52109987_52110093	0.0864507	NHLH1,2.p2	
mm9_v1_chr3_+_97432726_97432760	0.086297	NHLH1,2.p2	AK162951|Fmo5|14263|flavin containing monooxygenase 5	NM_001161763|Fmo5|14263|flavin containing monooxygenase 5	AK147040|Fmo5|14263|flavin containing monooxygenase 5	NM_001161765|Fmo5|14263|flavin containing monooxygenase 5	NM_010232|Fmo5|14263|flavin containing monooxygenase 5
mm9_v1_chr7_-_149558139_149558173	0.0862061	NHLH1,2.p2	BC049666|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK045822|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK163573|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	NM_177265|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene	AK031961|6330512M04Rik|320802|RIKEN cDNA 6330512M04 gene
mm9_v1_chr7_-_26518101_26518140	0.0859022	NHLH1,2.p2	AK182216|Hnrnpul1|232989|heterogeneous nuclear ribonucleoprotein U-like 1
mm9_v1_chr18_-_43847193_43847252	0.0858611	NHLH1,2.p2	AK143449|Jakmip2|76217|janus kinase and microtubule interacting protein 2	AK051838|Jakmip2|76217|janus kinase and microtubule interacting protein 2
mm9_v1_chr6_-_124915545_124915560	0.0858052	NHLH1,2.p2	NM_001164089|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr6_-_125263750_125263903	0.0853779	NHLH1,2.p2	BC138590|Ltbr|17000|lymphotoxin B receptor	BC138591|Ltbr|17000|lymphotoxin B receptor	AK146127|Ltbr|17000|lymphotoxin B receptor	L38423|Ltbr|17000|lymphotoxin B receptor	U29173|Ltbr|17000|lymphotoxin B receptor	NM_010736|Ltbr|17000|lymphotoxin B receptor
mm9_v1_chr6_+_137683745_137683761	0.0852677	NHLH1,2.p2	AK152283|Strap|20901|serine/threonine kinase receptor associated protein
mm9_v1_chr2_+_106533281_106533425	0.0852448	NHLH1,2.p2	AK165186|Mpped2|77015|metallophosphoesterase domain containing 2
mm9_v1_chr18_+_10725739_10725786	0.0851143	NHLH1,2.p2	AK139338|Mib1|225164|mindbomb homolog 1 (Drosophila)
mm9_v1_chr9_+_14080805_14080923	0.0851129	NHLH1,2.p2	AK017464|Sesn3|75747|sestrin 3	BC132086|Sesn3|75747|sestrin 3	BC138690|Sesn3|75747|sestrin 3
mm9_v1_chr2_+_163428073_163428114	0.0850899	NHLH1,2.p2	AK043791|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK052794|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK018052|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK156641|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK081680|Ttpal|76080|tocopherol (alpha) transfer protein-like	BC052389|Ttpal|76080|tocopherol (alpha) transfer protein-like	AK033600|Ttpal|76080|tocopherol (alpha) transfer protein-like
mm9_v1_chr2_+_32612744_32612905	0.0849021	NHLH1,2.p2	BC003466|Tor2a|30933|torsin family 2, member A	BC024469|Tor2a|30933|torsin family 2, member A	NM_152800|Tor2a|30933|torsin family 2, member A	AK170979|Tor2a|30933|torsin family 2, member A	AK171247|Tor2a|30933|torsin family 2, member A	AK162719|Tor2a|30933|torsin family 2, member A	AK019246|Tor2a|30933|torsin family 2, member A	AK185253|Tor2a|30933|torsin family 2, member A	AK189495|Tor2a|30933|torsin family 2, member A
mm9_v1_chr8_+_107115349_107115367	0.08473	NHLH1,2.p2	NM_001024606|Pdp2|382051|pyruvate dehyrogenase phosphatase catalytic subunit 2
mm9_v1_chr7_+_134920839_134920910	0.0844703	NHLH1,2.p2	NM_178029|Setd1a|233904|SET domain containing 1A
mm9_v1_chr11_+_98671461_98671474	0.0844124	NHLH1,2.p2	AK145886|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr8_+_124900494_124900538	0.0844109	NHLH1,2.p2	NM_001029993|Zc3h18|76014|zinc finger CCCH-type containing 18	NM_001029994|Zc3h18|76014|zinc finger CCCH-type containing 18
mm9_v1_chr6_-_91423479_91423542	0.0842594	NHLH1,2.p2	AK012745|Chchd4|72170|coiled-coil-helix-coiled-coil-helix domain containing 4
mm9_v1_chr12_+_77356412_77356500	0.0842196	NHLH1,2.p2	AK088700|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AF364579|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	AK180541|Mthfd1|108156|methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase
mm9_v1_chr10_-_23506981_23507073	0.0841294	NHLH1,2.p2	BC090257|Rps12|20042|ribosomal protein S12	BC089339|Rps12|20042|ribosomal protein S12	BC092044|Rps12|20042|ribosomal protein S12	BC002079|Rps12|20042|ribosomal protein S12	BC099377|Rps12|20042|ribosomal protein S12	BC089338|Rps12|20042|ribosomal protein S12	AK132208|Rps12|20042|ribosomal protein S12	AK166923|Rps12|20042|ribosomal protein S12	AK166992|Rps12|20042|ribosomal protein S12	BC096653|Rps12|20042|ribosomal protein S12	AK002848|Rps12|20042|ribosomal protein S12	AK008057|Rps12|20042|ribosomal protein S12	AK032757|Rps12|20042|ribosomal protein S12	AK168324|Rps12|20042|ribosomal protein S12	AK169215|Rps12|20042|ribosomal protein S12	NM_011295|Rps12|20042|ribosomal protein S12
mm9_v1_chr2_-_34956162_34956206	0.0841215	NHLH1,2.p2	BC019541|AI182371|98870|expressed sequence AI182371	BC037995|AI182371|98870|expressed sequence AI182371	AK050413|AI182371|98870|expressed sequence AI182371	BC115979|AI182371|98870|expressed sequence AI182371	BC115986|AI182371|98870|expressed sequence AI182371	NM_178885|AI182371|98870|expressed sequence AI182371	BC094504|AI182371|98870|expressed sequence AI182371	AK050126|AI182371|98870|expressed sequence AI182371
mm9_v1_chr10_+_79482419_79482458	0.0839404	NHLH1,2.p2	BC053750|Hmha1|70719|histocompatibility (minor) HA-1	NM_027521|Hmha1|70719|histocompatibility (minor) HA-1	AK044860|Hmha1|70719|histocompatibility (minor) HA-1
mm9_v1_chr4_+_115500670_115500814	0.0835899	NHLH1,2.p2	AK084014|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	AK148476|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	NM_175308|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC099740|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137587|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)	BC137589|Mobkl2c|100465|MOB1, Mps One Binder kinase activator-like 2C (yeast)
mm9_v1_chr18_-_31769504_31769590	0.0833832	NHLH1,2.p2	BC020087|Slc25a46|67453|solute carrier family 25, member 46	AK030346|Slc25a46|67453|solute carrier family 25, member 46	AK031117|Slc25a46|67453|solute carrier family 25, member 46	AK160834|Slc25a46|67453|solute carrier family 25, member 46	NM_026165|Slc25a46|67453|solute carrier family 25, member 46	AK004625|Slc25a46|67453|solute carrier family 25, member 46	AK008131|Slc25a46|67453|solute carrier family 25, member 46	AK078383|Slc25a46|67453|solute carrier family 25, member 46	AK147936|Slc25a46|67453|solute carrier family 25, member 46
mm9_v1_chr3_+_105508375_105508375	0.0833552	NHLH1,2.p2	AK078368|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene	NM_001163356|6530418L21Rik|109050|RIKEN cDNA 6530418L21 gene
mm9_v1_chr11_-_120486280_120486339	0.083348	NHLH1,2.p2	BC026403|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC040759|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026637|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	BC026650|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AY251540|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK051725|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	AK135484|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)	NM_153056|Sirt7|209011|sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)
mm9_v1_chr17_+_25325344_25325353	0.0832447	NHLH1,2.p2	NM_001197024|Unkl|74154|unkempt-like (Drosophila)
mm9_v1_chr11_+_49988344_49988383	0.0831543	NHLH1,2.p2	AK019392|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	NM_026543|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	BC028428|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene	AK003636|3010026O09Rik|68067|RIKEN cDNA 3010026O09 gene
mm9_v1_chr7_-_91558407_91558432	0.0829699	NHLH1,2.p2	D63644|Arnt2|11864|aryl hydrocarbon receptor nuclear translocator 2
mm9_v1_chr2_+_35111861_35111977	0.0829418	NHLH1,2.p2	AK148957|Gsn|227753|gelsolin	AK089934|Gsn|227753|gelsolin	AK168707|Gsn|227753|gelsolin	BC060377|Gsn|227753|gelsolin	AK151684|Gsn|227753|gelsolin	AK169670|Gsn|227753|gelsolin	AK168532|Gsn|227753|gelsolin	AK168461|Gsn|227753|gelsolin	AK167918|Gsn|227753|gelsolin	AK150359|Gsn|227753|gelsolin	AK153029|Gsn|227753|gelsolin	AK146969|Gsn|227753|gelsolin	AK168725|Gsn|227753|gelsolin	AK169041|Gsn|227753|gelsolin	AK166932|Gsn|227753|gelsolin
mm9_v1_chr18_-_35658485_35658600	0.0828562	NHLH1,2.p2	BC028488|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AJ297884|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	AK170415|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016466|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	BC016119|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	NM_030749|Sil1|81500|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm9_v1_chr4_-_57929087_57929168	0.0828281	NHLH1,2.p2	BC030929|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	AK085537|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	BC095953|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	NM_178727|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene	AK035369|D630039A03Rik|242484|RIKEN cDNA D630039A03 gene
mm9_v1_chr5_+_67067359_67067456	0.0827189	NHLH1,2.p2	NM_011670|Uchl1|22223|ubiquitin carboxy-terminal hydrolase L1
mm9_v1_chr14_+_55502261_55502285	0.0824515	NHLH1,2.p2	AF030769|Bcl2l2|12050|BCL2-like 2	NM_007537|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr10_-_126959397_126959444	0.0823807	NHLH1,2.p2	BC051396|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK012355|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)	AK169192|Shmt2|108037|serine hydroxymethyltransferase 2 (mitochondrial)
mm9_v1_chr12_-_73186299_73186425	0.0819547	NHLH1,2.p2	AK018449|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	NM_026038|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	BC004753|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	AK137154|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene	AK012954|2810055F11Rik|67217|RIKEN cDNA 2810055F11 gene
mm9_v1_chr5_+_3343861_3344038	0.0816331	NHLH1,2.p2	AK154197|Cdk6|12571|cyclin-dependent kinase 6
mm9_v1_chr5_+_31829709_31829815	0.0813723	NHLH1,2.p2	BC090964|Slc4a1ap|20534|solute carrier family 4 (anion exchanger), member 1, adaptor protein
mm9_v1_chr4_+_98697606_98697678	0.0813286	NHLH1,2.p2	AK149450|Angptl3|30924|angiopoietin-like 3	NM_013913|Angptl3|30924|angiopoietin-like 3	AK149555|Angptl3|30924|angiopoietin-like 3	BC019491|Angptl3|30924|angiopoietin-like 3	AF162224|Angptl3|30924|angiopoietin-like 3
mm9_v1_chr12_+_85626260_85626364	0.0813231	NHLH1,2.p2	NM_029880|Ptgr2|77219|prostaglandin reductase 2	BC021466|Ptgr2|77219|prostaglandin reductase 2	AK040396|Ptgr2|77219|prostaglandin reductase 2	AK020666|Ptgr2|77219|prostaglandin reductase 2	AK036168|Ptgr2|77219|prostaglandin reductase 2	AK041027|Ptgr2|77219|prostaglandin reductase 2	AK033693|Ptgr2|77219|prostaglandin reductase 2	AK159187|Ptgr2|77219|prostaglandin reductase 2	AK159932|Ptgr2|77219|prostaglandin reductase 2	AK021033|Ptgr2|77219|prostaglandin reductase 2	AK145232|Ptgr2|77219|prostaglandin reductase 2	AK168895|Ptgr2|77219|prostaglandin reductase 2	AK007522|Ptgr2|77219|prostaglandin reductase 2
mm9_v1_chr5_+_138187182_138187260	0.0812952	NHLH1,2.p2	AK080828|Tsc22d4|78829|TSC22 domain family, member 4	AK155712|Tsc22d4|78829|TSC22 domain family, member 4	AK170487|Tsc22d4|78829|TSC22 domain family, member 4	AK018735|Tsc22d4|78829|TSC22 domain family, member 4	NM_023910|Tsc22d4|78829|TSC22 domain family, member 4	AK150043|Tsc22d4|78829|TSC22 domain family, member 4	BC145721|Tsc22d4|78829|TSC22 domain family, member 4	BC145723|Tsc22d4|78829|TSC22 domain family, member 4	AK039535|Tsc22d4|78829|TSC22 domain family, member 4	AK154153|Tsc22d4|78829|TSC22 domain family, member 4	AK040534|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr10_+_59747208_59747231	0.081287	NHLH1,2.p2	AK149785|Psap|19156|prosaposin	NM_001146124|Psap|19156|prosaposin
mm9_v1_chr11_-_87172419_87172533	0.081249	NHLH1,2.p2	AK053696|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138900|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	BC138903|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)	NM_177167|Ppm1e|320472|protein phosphatase 1E (PP2C domain containing)
mm9_v1_chr1_+_172574668_172574695	0.0811568	NHLH1,2.p2	AK029292|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chr3_-_100489393_100489406	0.080906	NHLH1,2.p2	AK153336|Man1a2|17156|mannosidase, alpha, class 1A, member 2	NM_010763|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr4_+_140703825_140703842	0.0808694	NHLH1,2.p2	NM_172518|Fbxo42|213499|F-box protein 42
mm9_v1_chr15_+_94459521_94459680	0.0808264	NHLH1,2.p2	AK047437|Tmem117|320709|transmembrane protein 117	NM_178789|Tmem117|320709|transmembrane protein 117	AK048597|Tmem117|320709|transmembrane protein 117	AK034024|Tmem117|320709|transmembrane protein 117	BC051178|Tmem117|320709|transmembrane protein 117	BC054070|Tmem117|320709|transmembrane protein 117
mm9_v1_chr11_+_62942477_62942539	0.0807867	NHLH1,2.p2	S78568|Pmp22|18858|peripheral myelin protein 22
mm9_v1_chr7_-_31758390_31758487	0.0803059	NHLH1,2.p2	AK167463|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_001164184|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_001164185|Lsr|54135|lipolysis stimulated lipoprotein receptor	NM_017405|Lsr|54135|lipolysis stimulated lipoprotein receptor
mm9_v1_chr4_-_115817140_115817220	0.080293	NHLH1,2.p2	BC147058|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147059|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147737|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	BC147750|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	AK013564|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene	NM_026547|1520402A15Rik|68075|RIKEN cDNA 1520402A15 gene
mm9_v1_chr2_+_148506844_148506905	0.0802469	NHLH1,2.p2	NM_028986|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK141153|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK052820|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK053262|Gzf1|74533|GDNF-inducible zinc finger protein 1	AK080513|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr6_-_137597616_137597640	0.0800401	NHLH1,2.p2	AK166156|Eps8|13860|epidermal growth factor receptor pathway substrate 8	NM_007945|Eps8|13860|epidermal growth factor receptor pathway substrate 8
mm9_v1_chr17_+_87506971_87507037	0.0800052	NHLH1,2.p2	BC053015|Socs5|56468|suppressor of cytokine signaling 5	NM_019654|Socs5|56468|suppressor of cytokine signaling 5	AK135099|Socs5|56468|suppressor of cytokine signaling 5
mm9_v1_chr3_-_89716963_89717124	0.0799848	NHLH1,2.p2	X51976|Il6ra|16194|interleukin 6 receptor, alpha	X51975|Il6ra|16194|interleukin 6 receptor, alpha	BC019388|Il6ra|16194|interleukin 6 receptor, alpha	X53802|Il6ra|16194|interleukin 6 receptor, alpha	AK046337|Il6ra|16194|interleukin 6 receptor, alpha	AK082270|Il6ra|16194|interleukin 6 receptor, alpha	NM_010559|Il6ra|16194|interleukin 6 receptor, alpha	AK141197|Il6ra|16194|interleukin 6 receptor, alpha
mm9_v1_chrX_-_138824941_138824974	0.0796453	NHLH1,2.p2	BC016416|Acsl4|50790|acyl-CoA synthetase long-chain family member 4
mm9_v1_chr7_-_148196635_148196670	0.0788235	NHLH1,2.p2	AK007916|Ifitm3|66141|interferon induced transmembrane protein 3	AK003407|Ifitm3|66141|interferon induced transmembrane protein 3	NM_025378|Ifitm3|66141|interferon induced transmembrane protein 3	AY594690|Ifitm3|66141|interferon induced transmembrane protein 3
mm9_v1_chrX_+_72627673_72627773	0.0787432	NHLH1,2.p2	NM_026126|Fundc2|67391|FUN14 domain containing 2	AK013460|Fundc2|67391|FUN14 domain containing 2	AK014705|Fundc2|67391|FUN14 domain containing 2	AK031214|Fundc2|67391|FUN14 domain containing 2	BC049566|Fundc2|67391|FUN14 domain containing 2	BC061464|Fundc2|67391|FUN14 domain containing 2	AY234858|Fundc2|67391|FUN14 domain containing 2
mm9_v1_chr8_+_90796301_90796301	0.078731	NHLH1,2.p2	NM_007406|Adcy7|11513|adenylate cyclase 7	U12919|Adcy7|11513|adenylate cyclase 7
mm9_v1_chr18_-_67404904_67404933	0.078572	NHLH1,2.p2	AK158446|Mppe1|225651|metallophosphoesterase 1
mm9_v1_chr7_-_150970404_150970404	0.0785488	NHLH1,2.p2	AK133657|Mrgpre|244238|MAS-related GPR, member E	NM_175534|Mrgpre|244238|MAS-related GPR, member E
mm9_v1_chr4_+_137773045_137773112	0.0783843	NHLH1,2.p2	NM_001122897|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr5_+_124380677_124380719	0.0780472	NHLH1,2.p2	NM_001134767|Ccdc62|208908|coiled-coil domain containing 62
mm9_v1_chrX_+_71542425_71542435	0.0778778	NHLH1,2.p2	NM_018794|Atp6ap1|54411|ATPase, H+ transporting, lysosomal accessory protein 1
mm9_v1_chr19_+_10116079_10116095	0.0777598	NHLH1,2.p2	AB041560|Fads3|60527|fatty acid desaturase 3
mm9_v1_chr15_-_93167308_93167408	0.0776072	NHLH1,2.p2	AK148634|Yaf2|67057|YY1 associated factor 2	AB100452|Yaf2|67057|YY1 associated factor 2	AB100453|Yaf2|67057|YY1 associated factor 2	AK005008|Yaf2|67057|YY1 associated factor 2	AK011702|Yaf2|67057|YY1 associated factor 2	NM_024189|Yaf2|67057|YY1 associated factor 2
mm9_v1_chr17_+_27053979_27054172	0.0772565	NHLH1,2.p2	AK041901|Kifc5b|16580|kinesin family member C5B	NM_053173|Kifc5b|16580|kinesin family member C5B	BC091570|Kifc5b|16580|kinesin family member C5B	AF221103|Kifc5b|16580|kinesin family member C5B
mm9_v1_chr10_+_26492282_26492396	0.0772421	NHLH1,2.p2	BC030858|Arhgap18|73910|Rho GTPase activating protein 18	NM_176837|Arhgap18|73910|Rho GTPase activating protein 18	AK087800|Arhgap18|73910|Rho GTPase activating protein 18	AK014728|Arhgap18|73910|Rho GTPase activating protein 18
mm9_v1_chr7_-_50745358_50745392	0.0768928	NHLH1,2.p2	AK039193|Iglon5|210094|IgLON family member 5	NM_001164518|Iglon5|210094|IgLON family member 5
mm9_v1_chr11_+_114530028_114530110	0.0766266	NHLH1,2.p2	BC094258|Rpl38|67671|ribosomal protein L38	BC094644|Rpl38|67671|ribosomal protein L38	NM_001048058|Rpl38|67671|ribosomal protein L38	BC081447|Rpl38|67671|ribosomal protein L38
mm9_v1_chr2_+_145686480_145686484	0.0765298	NHLH1,2.p2	AK171064|Rin2|74030|Ras and Rab interactor 2
mm9_v1_chr15_+_99125768_99125839	0.0763926	NHLH1,2.p2	AF135440|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)	NM_018786|Prpf40b|54614|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm9_v1_chr11_-_59928692_59928731	0.0763649	NHLH1,2.p2	AK029606|4930412M03Rik|320201|RIKEN cDNA 4930412M03 gene	AK089395|4930412M03Rik|320201|RIKEN cDNA 4930412M03 gene	AK154788|4930412M03Rik|320201|RIKEN cDNA 4930412M03 gene
mm9_v1_chr9_-_110782576_110782616	0.0763446	NHLH1,2.p2	AK031966|Tmie|20776|transmembrane inner ear	AF481143|Tmie|20776|transmembrane inner ear	NM_146260|Tmie|20776|transmembrane inner ear	AK030341|Tmie|20776|transmembrane inner ear
mm9_v1_chr11_-_20012852_20012951	0.0760158	NHLH1,2.p2	BC047530|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK088216|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK163217|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK032832|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	AK033014|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)	BC027799|Actr2|66713|ARP2 actin-related protein 2 homolog (yeast)
mm9_v1_chr5_-_110772051_110772230	0.0758315	NHLH1,2.p2	NM_001164833|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	NM_001164834|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	NM_153400|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	BC106963|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	BC106964|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	AY044240|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2
mm9_v1_chr2_-_120365581_120365597	0.0753652	NHLH1,2.p2	U59739|Zfp106|20402|zinc finger protein 106
mm9_v1_chr2_+_158436493_158436936	0.0752912	NHLH1,2.p2	AY578289|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	NM_009508|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	BC052020|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163754|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK140468|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AK163661|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1	AJ001598|Slc32a1|22348|solute carrier family 32 (GABA vesicular transporter), member 1
mm9_v1_chr2_+_26439383_26439424	0.0751773	NHLH1,2.p2	NM_198724|Egfl7|353156|EGF-like domain 7	NM_198725|Egfl7|353156|EGF-like domain 7	AK002601|Egfl7|353156|EGF-like domain 7	AY239290|Egfl7|353156|EGF-like domain 7	BC024610|Egfl7|353156|EGF-like domain 7
mm9_v1_chr9_+_107982741_107982829	0.0750484	NHLH1,2.p2	NM_008243|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	BC010551|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	AK040934|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	AK134222|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	BC051393|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	AK144824|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)	M74181|Mst1|15235|macrophage stimulating 1 (hepatocyte growth factor-like)
mm9_v1_chr7_-_4796261_4796301	0.0746352	NHLH1,2.p2	NM_172737|Shisa7|232813|shisa homolog 7 (Xenopus laevis)
mm9_v1_chr5_+_143105467_143105567	0.0745903	NHLH1,2.p2	AK010881|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK043857|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK155113|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	BC044894|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	NM_178398|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK169051|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2	AK172030|Wipi2|74781|WD repeat domain, phosphoinositide interacting 2
mm9_v1_chrX_+_90920450_90920749	0.0744154	NHLH1,2.p2	NM_211138|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	BC048917|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AY189949|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform	AK032027|Pcyt1b|236899|phosphate cytidylyltransferase 1, choline, beta isoform
mm9_v1_chr19_+_36422888_36423026	0.0743731	NHLH1,2.p2	AK002387|Pcgf5|76073|polycomb group ring finger 5	AK080025|Pcgf5|76073|polycomb group ring finger 5
mm9_v1_chr4_+_97439119_97439136	0.0742134	NHLH1,2.p2	AK161966|A130013F12Rik|320308|RIKEN cDNA A130013F12 gene
mm9_v1_chr13_+_67006343_67006350	0.0740905	NHLH1,2.p2	AK139034|Gm10767|100038538|predicted gene 10767	NM_001177750|Gm10767|100038538|predicted gene 10767
mm9_v1_chr14_-_77436710_77436714	0.0740661	NHLH1,2.p2	AK053693|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene
mm9_v1_chr5_-_38952934_38952968	0.073796	NHLH1,2.p2	AK004644|Wdr1|22388|WD repeat domain 1
mm9_v1_chr12_-_51750084_51750144	0.0737008	NHLH1,2.p2	Z34524|Prkd1|18760|protein kinase D1
mm9_v1_chr15_+_78075220_78075493	0.0736152	NHLH1,2.p2	NM_008677|Ncf4|17972|neutrophil cytosolic factor 4	AK150510|Ncf4|17972|neutrophil cytosolic factor 4	AB002665|Ncf4|17972|neutrophil cytosolic factor 4	U59488|Ncf4|17972|neutrophil cytosolic factor 4	BC025517|Ncf4|17972|neutrophil cytosolic factor 4	FJ168470|Ncf4|17972|neutrophil cytosolic factor 4	AK171315|Ncf4|17972|neutrophil cytosolic factor 4
mm9_v1_chr9_-_66891535_66891699	0.0735905	NHLH1,2.p2	NM_001164252|Tpm1|22003|tropomyosin 1, alpha	NM_001164253|Tpm1|22003|tropomyosin 1, alpha	NM_001164254|Tpm1|22003|tropomyosin 1, alpha	NM_001164256|Tpm1|22003|tropomyosin 1, alpha
mm9_v1_chr7_-_7251462_7251471	0.0735032	NHLH1,2.p2	DQ186662|Clcn4-2|12727|chloride channel 4-2	AK088317|Clcn4-2|12727|chloride channel 4-2
mm9_v1_chr4_-_129055102_129055140	0.0734414	NHLH1,2.p2	BC017614|Zbtb8a|73680|zinc finger and BTB domain containing 8a
mm9_v1_chr5_-_137548123_137548145	0.073258	NHLH1,2.p2	BC054091|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	M33960|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	AK040662|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1	NM_008871|Serpine1|18787|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm9_v1_chr9_-_21875603_21875617	0.0731132	NHLH1,2.p2	AK089104|Zfp653|319601|zinc finger protein 653
mm9_v1_chr5_-_92512486_92512611	0.0728281	NHLH1,2.p2	AK153893|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK153221|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK151732|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080794|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080796|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC119806|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	BC122883|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr10_-_76576422_76576449	0.0728023	NHLH1,2.p2	U11637|Col18a1|12822|collagen, type XVIII, alpha 1	BC043697|Col18a1|12822|collagen, type XVIII, alpha 1	NM_001109991|Col18a1|12822|collagen, type XVIII, alpha 1
mm9_v1_chr10_+_79379715_79379715	0.0727728	NHLH1,2.p2	AK039628|Kiss1r|114229|KISS1 receptor	AK139303|Kiss1r|114229|KISS1 receptor	NM_053244|Kiss1r|114229|KISS1 receptor
mm9_v1_chr2_-_154429368_154429412	0.0724509	NHLH1,2.p2	BC025796|Pxmp4|59038|peroxisomal membrane protein 4	AJ271476|Pxmp4|59038|peroxisomal membrane protein 4	AK143785|Pxmp4|59038|peroxisomal membrane protein 4	AK156743|Pxmp4|59038|peroxisomal membrane protein 4	AK050647|Pxmp4|59038|peroxisomal membrane protein 4	NM_021534|Pxmp4|59038|peroxisomal membrane protein 4
mm9_v1_chr12_-_32635399_32635399	0.0723599	NHLH1,2.p2	AK133127|Hbp1|73389|high mobility group box transcription factor 1	NM_153198|Hbp1|73389|high mobility group box transcription factor 1	NM_177993|Hbp1|73389|high mobility group box transcription factor 1
mm9_v1_chr5_-_144031617_144031663	0.0723179	NHLH1,2.p2	BC057078|Zfp316|54201|zinc finger protein 316
mm9_v1_chr8_+_125091889_125091914	0.0721554	NHLH1,2.p2	AF477481|Cdt1|67177|chromatin licensing and DNA replication factor 1	BC048076|Cdt1|67177|chromatin licensing and DNA replication factor 1	NM_026014|Cdt1|67177|chromatin licensing and DNA replication factor 1
mm9_v1_chr13_+_46513668_46513668	0.0720069	NHLH1,2.p2	NM_001081425|Rbm24|666794|RNA binding motif protein 24
mm9_v1_chr5_+_145888588_145888809	0.071787	NHLH1,2.p2	AK192837|Arpc1b|11867|actin related protein 2/3 complex, subunit 1B
mm9_v1_chr15_+_34236408_34236565	0.0715059	NHLH1,2.p2	AK035102|Matn2|17181|matrilin 2	NM_016762|Matn2|17181|matrilin 2	AK083151|Matn2|17181|matrilin 2	AK138211|Matn2|17181|matrilin 2	U69262|Matn2|17181|matrilin 2	AK163818|Matn2|17181|matrilin 2	AK081339|Matn2|17181|matrilin 2	BC092298|Matn2|17181|matrilin 2	BC005429|Matn2|17181|matrilin 2
mm9_v1_chr4_+_129497951_129498025	0.0714603	NHLH1,2.p2	NM_001164745|Ptp4a2|19244|protein tyrosine phosphatase 4a2	AK018045|5830469G19Rik|76093|RIKEN cDNA 5830469G19 gene
mm9_v1_chr18_-_12914177_12914270	0.0714325	NHLH1,2.p2	AK209493|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr16_-_95680888_95680987	0.0712979	NHLH1,2.p2	AK142379|Erg|13876|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm9_v1_chr9_-_21889841_21889883	0.0712352	NHLH1,2.p2	BC004583|Ecsit|26940|ECSIT homolog (Drosophila)	AK007564|Ecsit|26940|ECSIT homolog (Drosophila)	AK012835|Ecsit|26940|ECSIT homolog (Drosophila)
mm9_v1_chr15_-_98711692_98711844	0.0711803	NHLH1,2.p2	AK007708|Rhebl1|69159|Ras homolog enriched in brain like 1	BC016521|Rhebl1|69159|Ras homolog enriched in brain like 1	AK135858|Rhebl1|69159|Ras homolog enriched in brain like 1	AY327413|Rhebl1|69159|Ras homolog enriched in brain like 1	NM_026967|Rhebl1|69159|Ras homolog enriched in brain like 1
mm9_v1_chr16_-_60605339_60605356	0.0710629	NHLH1,2.p2	AK135075|Epha6|13840|Eph receptor A6	AK090366|Epha6|13840|Eph receptor A6	NM_007938|Epha6|13840|Eph receptor A6
mm9_v1_chr14_-_56503083_56503107	0.0709035	NHLH1,2.p2	BC065108|Cbln3|56410|cerebellin 3 precursor protein	NM_019820|Cbln3|56410|cerebellin 3 precursor protein
mm9_v1_chr2_+_125073393_125073429	0.0706988	NHLH1,2.p2	AF091101|Dut|110074|deoxyuridine triphosphatase
mm9_v1_chr5_-_101227486_101227632	0.0706025	NHLH1,2.p2	BC109169|Helq|191578|helicase, POLQ-like	BC109170|Helq|191578|helicase, POLQ-like	AK052427|Helq|191578|helicase, POLQ-like	BC082601|Helq|191578|helicase, POLQ-like	AK050769|Helq|191578|helicase, POLQ-like	AK040335|Helq|191578|helicase, POLQ-like	NM_001081107|Helq|191578|helicase, POLQ-like
mm9_v1_chr15_-_101573522_101573539	0.0704069	NHLH1,2.p2	BC125346|Krt71|56735|keratin 71	BC125348|Krt71|56735|keratin 71	AB033744|Krt71|56735|keratin 71	AB100413|Krt71|56735|keratin 71	AY033497|Krt71|56735|keratin 71	NM_019956|Krt71|56735|keratin 71	AK003610|Krt71|56735|keratin 71	AK003704|Krt71|56735|keratin 71
mm9_v1_chr1_+_121903556_121903630	0.0702372	NHLH1,2.p2	AK032652|Sctr|319229|secretin receptor	NM_001012322|Sctr|319229|secretin receptor	BC089355|Sctr|319229|secretin receptor
mm9_v1_chr7_+_120909509_120909519	0.0698331	NHLH1,2.p2	NM_145584|Spon1|233744|spondin 1, (f-spondin) extracellular matrix protein
mm9_v1_chrX_-_108810630_108810687	0.0698262	NHLH1,2.p2	BC116300|Hdx|245596|highly divergent homeobox	BC116301|Hdx|245596|highly divergent homeobox	AK083436|Hdx|245596|highly divergent homeobox	NM_001080549|Hdx|245596|highly divergent homeobox
mm9_v1_chr17_+_25970057_25970093	0.0697589	NHLH1,2.p2	AK009713|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr11_-_103226457_103226546	0.069586	NHLH1,2.p2	
mm9_v1_chr6_+_14851348_14851478	0.069375	NHLH1,2.p2	NM_053242|Foxp2|114142|forkhead box P2	AK051668|Foxp2|114142|forkhead box P2	AK085080|Foxp2|114142|forkhead box P2	AK080549|Foxp2|114142|forkhead box P2
mm9_v1_chr11_+_72609717_72609729	0.0693294	NHLH1,2.p2	AK158924|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1	NM_001045536|Zzef1|195018|zinc finger, ZZ-type with EF hand domain 1
mm9_v1_chr11_+_101177524_101177765	0.0692813	NHLH1,2.p2	AK140597|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK150939|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK171348|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	NM_011192|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC015255|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK156079|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	BC139818|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	D87911|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK178475|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK179381|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	AK180194|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	CT010198|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3	U60330|Psme3|19192|proteaseome (prosome, macropain) 28 subunit, 3
mm9_v1_chr2_+_31428244_31428356	0.06918	NHLH1,2.p2	NM_001033389|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166081|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK137035|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK145377|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK166478|Fubp3|320267|far upstream element (FUSE) binding protein 3	AK167671|Fubp3|320267|far upstream element (FUSE) binding protein 3
mm9_v1_chr9_+_85642584_85642686	0.0691363	NHLH1,2.p2	AK017009|4933431K14Rik|71295|RIKEN cDNA 4933431K14 gene
mm9_v1_chr4_-_133684552_133684560	0.0691234	NHLH1,2.p2	AK179341|Sh3bgrl3|73723|SH3 domain binding glutamic acid-rich protein-like 3
mm9_v1_chrX_-_75829120_75829237	0.0687749	NHLH1,2.p2	BC032926|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	NM_001164275|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK008151|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK083396|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK135895|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	AK161802|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1	NM_027322|Prrg1|546336|proline rich Gla (G-carboxyglutamic acid) 1
mm9_v1_chr3_-_5576206_5576238	0.0685273	NHLH1,2.p2	AF031128|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163302|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163303|Pxmp3|19302|peroxisomal membrane protein 3
mm9_v1_chr13_-_69138418_69138432	0.0685058	NHLH1,2.p2	AK132312|Adcy2|210044|adenylate cyclase 2	NM_153534|Adcy2|210044|adenylate cyclase 2
mm9_v1_chrX_+_82293610_82293751	0.0682965	NHLH1,2.p2	AK045257|Dmd|13405|dystrophin, muscular dystrophy	AK013510|Dmd|13405|dystrophin, muscular dystrophy	AK075809|Dmd|13405|dystrophin, muscular dystrophy	AK087829|Dmd|13405|dystrophin, muscular dystrophy	AK036936|Dmd|13405|dystrophin, muscular dystrophy
mm9_v1_chr17_-_84587162_84587254	0.0681102	NHLH1,2.p2	BC139416|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2	BC028330|Zfp36l2|12193|zinc finger protein 36, C3H type-like 2
mm9_v1_chr10_-_127520025_127520063	0.0680623	NHLH1,2.p2	
mm9_v1_chr8_-_72826340_72826402	0.0679788	NHLH1,2.p2	BC085301|Ddx49|234374|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	NM_001024922|Ddx49|234374|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	BC099554|Ddx49|234374|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	AK139073|Ddx49|234374|DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
mm9_v1_chr14_-_47006944_47006954	0.0677645	NHLH1,2.p2	BC052846|Bmp4|12159|bone morphogenetic protein 4
mm9_v1_chrX_+_71550562_71550629	0.0676882	NHLH1,2.p2	AK156224|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK036969|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK028880|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK171216|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC025606|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	AK032869|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1	BC037598|Gdi1|14567|guanosine diphosphate (GDP) dissociation inhibitor 1
mm9_v1_chr6_-_125115316_125115426	0.0675347	NHLH1,2.p2	BC096042|Gapdh|14433|glyceraldehyde-3-phosphate dehydrogenase
mm9_v1_chr18_+_67624482_67624504	0.0674991	NHLH1,2.p2	NM_144867|Slmo1|225655|slowmo homolog 1 (Drosophila)
mm9_v1_chr11_-_65601657_65601750	0.0674985	NHLH1,2.p2	AK187893|Map2k4|26398|mitogen-activated protein kinase kinase 4	U18310|Map2k4|26398|mitogen-activated protein kinase kinase 4
mm9_v1_chr13_-_67407347_67407402	0.0674416	NHLH1,2.p2	NM_001003666|Zfp457|431706|zinc finger protein 457
mm9_v1_chr2_+_26766310_26766326	0.0671645	NHLH1,2.p2	AK160622|Rpl7a|27176|ribosomal protein L7A	AK135447|Rpl7a|27176|ribosomal protein L7A	BC089624|Rpl7a|27176|ribosomal protein L7A	AK160044|Rpl7a|27176|ribosomal protein L7A	AK160621|Rpl7a|27176|ribosomal protein L7A	AK019449|Rpl7a|27176|ribosomal protein L7A	NM_013721|Rpl7a|27176|ribosomal protein L7A
mm9_v1_chr1_+_136312086_136312140	0.0670688	NHLH1,2.p2	AK200997|Adipor1|72674|adiponectin receptor 1	AK137258|Adipor1|72674|adiponectin receptor 1
mm9_v1_chr8_-_74116341_74116362	0.0669042	NHLH1,2.p2	AK080749|Pgls|66171|6-phosphogluconolactonase
mm9_v1_chr1_-_94044969_94044969	0.0668219	NHLH1,2.p2	BC066052|Hdac4|208727|histone deacetylase 4	NM_207225|Hdac4|208727|histone deacetylase 4
mm9_v1_chr2_+_145501211_145501298	0.0667951	NHLH1,2.p2	AK031463|BC039771|408057|cDNA sequence BC039771
mm9_v1_chr18_+_32399979_32400013	0.0667923	NHLH1,2.p2	AK151188|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	AK152347|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	AK152988|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	AK154745|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	NM_133658|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	S71186|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	BC026575|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	BC022956|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3	BC016595|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3
mm9_v1_chr15_+_76778938_76779018	0.0666472	NHLH1,2.p2	AK153059|1110038F14Rik|117171|RIKEN cDNA 1110038F14 gene	AK160695|1110038F14Rik|117171|RIKEN cDNA 1110038F14 gene	BC038324|1110038F14Rik|117171|RIKEN cDNA 1110038F14 gene	NM_054099|1110038F14Rik|117171|RIKEN cDNA 1110038F14 gene	AK004154|1110038F14Rik|117171|RIKEN cDNA 1110038F14 gene
mm9_v1_chr6_-_86683330_86683393	0.06648	NHLH1,2.p2	BC054767|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK146964|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK004716|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	AK155238|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)	NM_011818|Gmcl1|23885|germ cell-less homolog 1 (Drosophila)
mm9_v1_chr17_-_35804498_35804538	0.0664544	NHLH1,2.p2	AK155386|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	AK129008|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)	NM_175137|Vars2|68915|valyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr5_-_137971467_137971513	0.0662516	NHLH1,2.p2	
mm9_v1_chr2_+_179759610_179759731	0.0659602	NHLH1,2.p2	BC040823|Lsm14b|241846|LSM14 homolog B (SCD6, S. cerevisiae)	NM_177727|Lsm14b|241846|LSM14 homolog B (SCD6, S. cerevisiae)
mm9_v1_chr12_+_17551678_17551699	0.0659422	NHLH1,2.p2	NM_013614|Odc1|18263|ornithine decarboxylase, structural 1
mm9_v1_chr3_+_137581582_137581604	0.0654959	NHLH1,2.p2	
mm9_v1_chr7_-_112788821_112788929	0.0654106	NHLH1,2.p2	BC028310|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC013794|Arfip2|76932|ADP-ribosylation factor interacting protein 2	BC022942|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK009100|Arfip2|76932|ADP-ribosylation factor interacting protein 2	AK154772|Arfip2|76932|ADP-ribosylation factor interacting protein 2	NM_029802|Arfip2|76932|ADP-ribosylation factor interacting protein 2
mm9_v1_chr4_-_150432002_150432098	0.0653684	NHLH1,2.p2	U60961|Vamp3|22319|vesicle-associated membrane protein 3	AK165947|Vamp3|22319|vesicle-associated membrane protein 3	BC060045|Vamp3|22319|vesicle-associated membrane protein 3	AK168413|Vamp3|22319|vesicle-associated membrane protein 3	AK169087|Vamp3|22319|vesicle-associated membrane protein 3	AK051691|Vamp3|22319|vesicle-associated membrane protein 3	AK169056|Vamp3|22319|vesicle-associated membrane protein 3	AK051272|Vamp3|22319|vesicle-associated membrane protein 3	NM_009498|Vamp3|22319|vesicle-associated membrane protein 3
mm9_v1_chr4_-_118130054_118130099	0.0651745	NHLH1,2.p2	AF360122|Mpl|17480|myeloproliferative leukemia virus oncogene	X73677|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146612|Mpl|17480|myeloproliferative leukemia virus oncogene	BC101943|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103513|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103514|Mpl|17480|myeloproliferative leukemia virus oncogene	BC103515|Mpl|17480|myeloproliferative leukemia virus oncogene	BC146613|Mpl|17480|myeloproliferative leukemia virus oncogene	Z22649|Mpl|17480|myeloproliferative leukemia virus oncogene	AK041166|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_001122949|Mpl|17480|myeloproliferative leukemia virus oncogene	NM_010823|Mpl|17480|myeloproliferative leukemia virus oncogene
mm9_v1_chr19_+_38911056_38911166	0.0651472	NHLH1,2.p2	AK172979|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	NM_145952|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138056|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC138057|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12	BC145129|Tbc1d12|209478|TBC1D12: TBC1 domain family, member 12
mm9_v1_chr10_+_62442975_62442986	0.065145	NHLH1,2.p2	AK083205|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr17_-_25969644_25969733	0.0651394	NHLH1,2.p2	AK183097|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK209265|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr5_-_131783352_131783418	0.0650957	NHLH1,2.p2	BC069177|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)	NM_145218|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)	BC158110|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)
mm9_v1_chr11_-_78959855_78959908	0.0649437	NHLH1,2.p2	NM_013571|Ksr1|16706|kinase suppressor of ras 1	U43585|Ksr1|16706|kinase suppressor of ras 1	AK036566|Ksr1|16706|kinase suppressor of ras 1
mm9_v1_chr11_-_103815291_103815312	0.0648883	NHLH1,2.p2	BC019167|Nsf|18195|N-ethylmaleimide sensitive fusion protein
mm9_v1_chr6_-_124915407_124915438	0.0646768	NHLH1,2.p2	NM_012003|Cops7a|26894|COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
mm9_v1_chr3_-_57098670_57098869	0.0646069	NHLH1,2.p2	L15429|Tm4sf1|17112|transmembrane 4 superfamily member 1	L15443|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK133556|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK077326|Tm4sf1|17112|transmembrane 4 superfamily member 1	AK164718|Tm4sf1|17112|transmembrane 4 superfamily member 1
mm9_v1_chr8_+_72315061_72315156	0.0645839	NHLH1,2.p2	BC138721|Atp13a1|170759|ATPase type 13A1	BC138722|Atp13a1|170759|ATPase type 13A1	NM_133224|Atp13a1|170759|ATPase type 13A1	AB035381|Atp13a1|170759|ATPase type 13A1	AK052057|Atp13a1|170759|ATPase type 13A1	BC078635|Atp13a1|170759|ATPase type 13A1
mm9_v1_chr5_+_35104409_35104415	0.064519	NHLH1,2.p2	AK164637|Htt|15194|huntingtin
mm9_v1_chr15_+_99421458_99421594	0.0645097	NHLH1,2.p2	NM_009701|Aqp5|11830|aquaporin 5	AK009302|Aqp5|11830|aquaporin 5	AK004736|Aqp5|11830|aquaporin 5
mm9_v1_chr5_+_110605872_110605990	0.0644201	NHLH1,2.p2	AK171773|Golga3|269682|golgi autoantigen, golgin subfamily a, 3	AK133623|Golga3|269682|golgi autoantigen, golgin subfamily a, 3	D78270|Golga3|269682|golgi autoantigen, golgin subfamily a, 3
mm9_v1_chr8_+_98239780_98239831	0.0643705	NHLH1,2.p2	BC139198|Setd6|66083|SET domain containing 6	BC139199|Setd6|66083|SET domain containing 6	AK075597|Setd6|66083|SET domain containing 6	AK010304|Setd6|66083|SET domain containing 6	NM_001035123|Setd6|66083|SET domain containing 6	AK167753|Setd6|66083|SET domain containing 6
mm9_v1_chr10_-_80129720_80129733	0.0641883	NHLH1,2.p2	BC013844|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr5_+_108796754_108796809	0.0640611	NHLH1,2.p2	AK031816|Gm10419|100038441|predicted gene 10419
mm9_v1_chr4_-_106850812_106850984	0.0637799	NHLH1,2.p2	AK008694|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	BC028321|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	AK011991|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	AK008715|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene	NM_025617|2210012G02Rik|66526|RIKEN cDNA 2210012G02 gene
mm9_v1_chrX_-_34185389_34185408	0.0637444	NHLH1,2.p2	AK046007|Akap17b|338351|A kinase (PRKA) anchor protein 17B	AK054091|Akap17b|338351|A kinase (PRKA) anchor protein 17B	NM_001081956|Akap17b|338351|A kinase (PRKA) anchor protein 17B
mm9_v1_chr12_-_88488851_88488917	0.0637326	NHLH1,2.p2	AK076813|Pomt2|217734|protein-O-mannosyltransferase 2	AY090481|Pomt2|217734|protein-O-mannosyltransferase 2	NM_153415|Pomt2|217734|protein-O-mannosyltransferase 2	AK085703|Pomt2|217734|protein-O-mannosyltransferase 2
mm9_v1_chr11_-_63892874_63892978	0.0636803	NHLH1,2.p2	AK213695|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC038046|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	BC018301|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK149999|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK171661|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK010385|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK154668|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK156865|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	AK172718|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)	NM_178379|Cox10|70383|COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)
mm9_v1_chr12_-_82881995_82882183	0.0635474	NHLH1,2.p2	AK053843|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	AK155677|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	NM_001174107|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9	NM_177395|Map3k9|338372|mitogen-activated protein kinase kinase kinase 9
mm9_v1_chr17_-_34324234_34324335	0.0633957	NHLH1,2.p2	CT010227|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22447|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22448|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22919|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	U22920|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	AK008429|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	S58203|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	BC116364|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44454|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44456|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44457|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44458|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	D44461|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	NM_013585|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	S59862|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	AK171670|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	BC032210|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	AK152743|Psmb9|16912|proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)
mm9_v1_chr5_-_142985612_142985614	0.0632767	NHLH1,2.p2	AK079539|Radil|231858|Ras association and DIL domains
mm9_v1_chr8_+_73118329_73118423	0.0630582	NHLH1,2.p2	AF288525|Isyna1|71780|myo-inositol 1-phosphate synthase A1	NM_023627|Isyna1|71780|myo-inositol 1-phosphate synthase A1	AK137089|Isyna1|71780|myo-inositol 1-phosphate synthase A1	BC003458|Isyna1|71780|myo-inositol 1-phosphate synthase A1	AK005029|Isyna1|71780|myo-inositol 1-phosphate synthase A1	AK079323|Isyna1|71780|myo-inositol 1-phosphate synthase A1
mm9_v1_chr17_-_45739015_45739052	0.0630198	NHLH1,2.p2	DQ190000|Gm7325|653016|predicted gene 7325	NM_001177468|Gm7325|653016|predicted gene 7325	NM_001177469|Gm7325|653016|predicted gene 7325
mm9_v1_chrX_-_71269249_71269268	0.0628707	NHLH1,2.p2	BC004778|Irak1|16179|interleukin-1 receptor-associated kinase 1	AF103876|Irak1|16179|interleukin-1 receptor-associated kinase 1	AY184362|Irak1|16179|interleukin-1 receptor-associated kinase 1	AY184363|Irak1|16179|interleukin-1 receptor-associated kinase 1	AY184364|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177975|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177973|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177974|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_001177976|Irak1|16179|interleukin-1 receptor-associated kinase 1	NM_008363|Irak1|16179|interleukin-1 receptor-associated kinase 1
mm9_v1_chr11_-_74739449_74739483	0.0628594	NHLH1,2.p2	AK157122|Srr|27364|serine racemase
mm9_v1_chr14_+_8835385_8835479	0.0625169	NHLH1,2.p2	NM_025341|Abhd6|66082|abhydrolase domain containing 6	AK090076|Abhd6|66082|abhydrolase domain containing 6	BC027011|Abhd6|66082|abhydrolase domain containing 6	AK168782|Abhd6|66082|abhydrolase domain containing 6	AK002883|Abhd6|66082|abhydrolase domain containing 6	AK011887|Abhd6|66082|abhydrolase domain containing 6	AK076105|Abhd6|66082|abhydrolase domain containing 6
mm9_v1_chr9_-_57492978_57493044	0.062516	NHLH1,2.p2	BC018394|Csk|12988|c-src tyrosine kinase	NM_007783|Csk|12988|c-src tyrosine kinase	AK156058|Csk|12988|c-src tyrosine kinase	AK170815|Csk|12988|c-src tyrosine kinase	BC052006|Csk|12988|c-src tyrosine kinase
mm9_v1_chrX_+_136219606_136219671	0.062514	NHLH1,2.p2	BC147581|Tbc1d8b|245638|TBC1 domain family, member 8B	BC151057|Tbc1d8b|245638|TBC1 domain family, member 8B
mm9_v1_chr15_+_39490991_39491064	0.0624498	NHLH1,2.p2	AK148339|Rims2|116838|regulating synaptic membrane exocytosis 2
mm9_v1_chr1_+_12708582_12708625	0.0624172	NHLH1,2.p2	AK037389|Sulf1|240725|sulfatase 1	AY101178|Sulf1|240725|sulfatase 1	BC034547|Sulf1|240725|sulfatase 1	BC049276|Sulf1|240725|sulfatase 1	NM_172294|Sulf1|240725|sulfatase 1
mm9_v1_chr17_+_34046356_34046732	0.0621299	NHLH1,2.p2	NM_007829|Daxx|13163|Fas death domain-associated protein	AK090356|Daxx|13163|Fas death domain-associated protein	AK145906|Daxx|13163|Fas death domain-associated protein	AK146743|Daxx|13163|Fas death domain-associated protein	AK144332|Daxx|13163|Fas death domain-associated protein	AK151279|Daxx|13163|Fas death domain-associated protein	AK133863|Daxx|13163|Fas death domain-associated protein	AK153149|Daxx|13163|Fas death domain-associated protein	AK156425|Daxx|13163|Fas death domain-associated protein	AK172616|Daxx|13163|Fas death domain-associated protein	BC128373|Daxx|13163|Fas death domain-associated protein
mm9_v1_chr5_-_124875921_124875965	0.0619098	NHLH1,2.p2	NM_001081203|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK077133|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)	AK165852|Sbno1|243272|sno, strawberry notch homolog 1 (Drosophila)
mm9_v1_chr6_+_83745021_83745052	0.0618351	NHLH1,2.p2	AK007240|Nagk|56174|N-acetylglucosamine kinase	AK084646|Nagk|56174|N-acetylglucosamine kinase	AJ242909|Nagk|56174|N-acetylglucosamine kinase	NM_019542|Nagk|56174|N-acetylglucosamine kinase	AK089238|Nagk|56174|N-acetylglucosamine kinase
mm9_v1_chr10_+_126602394_126602451	0.0617075	NHLH1,2.p2	BC022180|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr11_-_100217392_100217401	0.0617041	NHLH1,2.p2	BC034089|Hap1|15114|huntingtin-associated protein 1	AK138436|Hap1|15114|huntingtin-associated protein 1	AJ000262|Hap1|15114|huntingtin-associated protein 1	AJ002271|Hap1|15114|huntingtin-associated protein 1
mm9_v1_chr6_+_148893645_148893712	0.0615157	NHLH1,2.p2	BC106181|3010003L21Rik|109163|RIKEN cDNA 3010003L21 gene	AK087382|3010003L21Rik|109163|RIKEN cDNA 3010003L21 gene
mm9_v1_chr8_-_87370795_87370829	0.0614582	NHLH1,2.p2	NM_007591|Calr|12317|calreticulin
mm9_v1_chr7_+_107756069_107756204	0.0614291	NHLH1,2.p2	AK169842|Rab6|19346|RAB6, member RAS oncogene family	NM_001163663|Rab6|19346|RAB6, member RAS oncogene family	NM_024287|Rab6|19346|RAB6, member RAS oncogene family	AK154012|Rab6|19346|RAB6, member RAS oncogene family
mm9_v1_chr4_-_62815137_62815208	0.0613684	NHLH1,2.p2	X68680|Ambp|11699|alpha 1 microglobulin/bikunin	AK004907|Ambp|11699|alpha 1 microglobulin/bikunin	D28812|Ambp|11699|alpha 1 microglobulin/bikunin	NM_007443|Ambp|11699|alpha 1 microglobulin/bikunin	BC021660|Ambp|11699|alpha 1 microglobulin/bikunin
mm9_v1_chr17_+_46848407_46848441	0.0611973	NHLH1,2.p2	BC003424|Pex6|224824|peroxisomal biogenesis factor 6	NM_145488|Pex6|224824|peroxisomal biogenesis factor 6	AK083898|Pex6|224824|peroxisomal biogenesis factor 6	AK143173|Pex6|224824|peroxisomal biogenesis factor 6	AK030565|Pex6|224824|peroxisomal biogenesis factor 6	AK220525|Pex6|224824|peroxisomal biogenesis factor 6
mm9_v1_chr6_+_66986592_66986609	0.0611818	NHLH1,2.p2	AK029473|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr16_-_3872273_3872373	0.0610681	NHLH1,2.p2	AK016727|Zfp597|71063|zinc finger protein 597	NM_001033159|Zfp597|71063|zinc finger protein 597
mm9_v1_chr7_+_26067559_26067828	0.0610274	NHLH1,2.p2	AF363690|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr15_-_32174404_32174416	0.0610088	NHLH1,2.p2	AK002304|Snord123|66835|small nucleolar RNA, C/D box 123
mm9_v1_chr3_-_90017553_90017574	0.0609727	NHLH1,2.p2	BC048352|Rps27|57294|ribosomal protein S27	BC027649|Rps27|57294|ribosomal protein S27	BC055693|Rps27|57294|ribosomal protein S27	BC037026|Rps27|57294|ribosomal protein S27	AK014294|Rps27|57294|ribosomal protein S27	AK084058|Rps27|57294|ribosomal protein S27	NM_001190258|Gm9846|100043813|predicted gene 9846	AK088320|Rps27|57294|ribosomal protein S27	AK166551|Rps27|57294|ribosomal protein S27	NM_027015|Rps27|57294|ribosomal protein S27
mm9_v1_chr8_-_72644704_72644742	0.0605944	NHLH1,2.p2	X84727|Ncan|13004|neurocan	BC065118|Ncan|13004|neurocan	NM_007789|Ncan|13004|neurocan
mm9_v1_chr14_+_15179435_15179644	0.0605923	NHLH1,2.p2	BC077736|Il3ra|16188|interleukin 3 receptor, alpha chain	FJ550346|Il3ra|16188|interleukin 3 receptor, alpha chain
mm9_v1_chr12_+_72075637_72075733	0.0604435	NHLH1,2.p2	AK165424|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AK002877|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AF055983|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AK168495|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AK169577|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	BC091743|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3	AF060089|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3
mm9_v1_chr17_+_5341444_5341585	0.0603491	NHLH1,2.p2	AK135725|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK033272|Arid1b|239985|AT rich interactive domain 1B (SWI-like)	AK139800|Arid1b|239985|AT rich interactive domain 1B (SWI-like)
mm9_v1_chr2_+_164704883_164704976	0.0602054	NHLH1,2.p2	BC060988|Pcif1|228866|PDX1 C-terminal inhibiting factor 1	BC031431|Pcif1|228866|PDX1 C-terminal inhibiting factor 1	AK009480|Pcif1|228866|PDX1 C-terminal inhibiting factor 1	AK150740|Pcif1|228866|PDX1 C-terminal inhibiting factor 1
mm9_v1_chr2_+_11627013_11627178	0.0601843	NHLH1,2.p2	BC069881|Il15ra|16169|interleukin 15 receptor, alpha chain	AK040940|Il15ra|16169|interleukin 15 receptor, alpha chain	AK080000|Il15ra|16169|interleukin 15 receptor, alpha chain	BC022705|Il15ra|16169|interleukin 15 receptor, alpha chain	NM_133836|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221616|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221617|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221618|Il15ra|16169|interleukin 15 receptor, alpha chain	AY221619|Il15ra|16169|interleukin 15 receptor, alpha chain
mm9_v1_chr12_+_85441603_85441781	0.0600978	NHLH1,2.p2	AY999300|Acot6|217700|acyl-CoA thioesterase 6	NM_172580|Acot6|217700|acyl-CoA thioesterase 6	BC139306|Acot6|217700|acyl-CoA thioesterase 6	BC139328|Acot6|217700|acyl-CoA thioesterase 6	AK163605|Acot6|217700|acyl-CoA thioesterase 6	AK014558|Acot6|217700|acyl-CoA thioesterase 6	AK047479|Acot6|217700|acyl-CoA thioesterase 6	AK135361|Acot6|217700|acyl-CoA thioesterase 6	BC002159|Acot6|217700|acyl-CoA thioesterase 6
mm9_v1_chrX_-_49518428_49518445	0.0600435	NHLH1,2.p2	X83577|Gpc4|14735|glypican 4
mm9_v1_chr4_+_124527985_124528057	0.0600144	NHLH1,2.p2	AK153627|Yrdc|230734|yrdC domain containing (E.coli)	NM_153566|Yrdc|230734|yrdC domain containing (E.coli)	BC023823|Yrdc|230734|yrdC domain containing (E.coli)	AY283537|Yrdc|230734|yrdC domain containing (E.coli)
mm9_v1_chr9_+_55174719_55174759	0.0600074	NHLH1,2.p2	BC068128|AI118078|244886|expressed sequence AI118078	AK036040|AI118078|244886|expressed sequence AI118078	NM_172923|AI118078|244886|expressed sequence AI118078
mm9_v1_chr15_+_25914202_25914226	0.0597644	NHLH1,2.p2	BC006964|Zfp622|52521|zinc finger protein 622
mm9_v1_chr3_+_102273849_102273853	0.0596841	NHLH1,2.p2	AK144588|Ngf|18049|nerve growth factor	NM_001112698|Ngf|18049|nerve growth factor	NM_013609|Ngf|18049|nerve growth factor	M35075|Ngf|18049|nerve growth factor	V00836|Ngf|18049|nerve growth factor
mm9_v1_chr5_-_34856561_34856665	0.0595392	NHLH1,2.p2	AK160165|Tnip2|231130|TNFAIP3 interacting protein 2	BC052083|Tnip2|231130|TNFAIP3 interacting protein 2	AJ304865|Tnip2|231130|TNFAIP3 interacting protein 2	NM_139064|Tnip2|231130|TNFAIP3 interacting protein 2
mm9_v1_chr4_+_43394941_43394946	0.0594465	NHLH1,2.p2	BC050780|Rusc2|100213|RUN and SH3 domain containing 2
mm9_v1_chr2_-_104689616_104690006	0.0594252	NHLH1,2.p2	AK166405|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	BC115470|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	AK035530|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	BC099390|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	AK037087|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	BC151011|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	BC151019|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	AK038703|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	NM_178695|Prrg4|228413|proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)
mm9_v1_chr9_-_115152261_115152330	0.0593045	NHLH1,2.p2	
mm9_v1_chr19_+_41986360_41986656	0.0592216	NHLH1,2.p2	NM_023418|Pgam1|18648|phosphoglycerate mutase 1	BC002241|Pgam1|18648|phosphoglycerate mutase 1	BC106139|Pgam1|18648|phosphoglycerate mutase 1	BC005661|Pgam1|18648|phosphoglycerate mutase 1	AF283667|Pgam1|18648|phosphoglycerate mutase 1	AK004921|Pgam1|18648|phosphoglycerate mutase 1	AK009905|Pgam1|18648|phosphoglycerate mutase 1	AK144681|Pgam1|18648|phosphoglycerate mutase 1	AK153202|Pgam1|18648|phosphoglycerate mutase 1	AK159305|Pgam1|18648|phosphoglycerate mutase 1	AK150716|Pgam1|18648|phosphoglycerate mutase 1	AK152443|Pgam1|18648|phosphoglycerate mutase 1	AK165410|Pgam1|18648|phosphoglycerate mutase 1	AK168949|Pgam1|18648|phosphoglycerate mutase 1	BC083090|Pgam1|18648|phosphoglycerate mutase 1	BC066844|Pgam1|18648|phosphoglycerate mutase 1
mm9_v1_chr19_+_45081114_45081218	0.0591731	NHLH1,2.p2	AK146244|Peo1|226153|progressive external ophthalmoplegia 1 (human)
mm9_v1_chr3_-_32981940_32981960	0.059116	NHLH1,2.p2	AB032591|Pex5l|58869|peroxisomal biogenesis factor 5-like	AK039764|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_021483|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr14_+_55502433_55502449	0.0589766	NHLH1,2.p2	AK013244|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr12_+_70285127_70285208	0.0589711	NHLH1,2.p2	AK171000|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	NM_146035|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK152925|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK159185|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK166037|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK083370|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	BC010583|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	BC027169|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK151964|Mgat2|217664|mannoside acetylglucosaminyltransferase 2	AK153382|Mgat2|217664|mannoside acetylglucosaminyltransferase 2
mm9_v1_chr19_+_56900698_56900775	0.058885	NHLH1,2.p2	AB183526|Tdrd1|83561|tudor domain containing 1	NM_001002238|Tdrd1|83561|tudor domain containing 1	AB183527|Tdrd1|83561|tudor domain containing 1	NM_001002240|Tdrd1|83561|tudor domain containing 1	AK029806|Tdrd1|83561|tudor domain containing 1	NM_031387|Tdrd1|83561|tudor domain containing 1
mm9_v1_chr7_+_134388053_134388144	0.0588282	NHLH1,2.p2	BC139048|Zfp771|244216|zinc finger protein 771	BC139049|Zfp771|244216|zinc finger protein 771	BC145524|Zfp771|244216|zinc finger protein 771
mm9_v1_chr17_+_26339883_26339926	0.0587764	NHLH1,2.p2	AK080707|Rgs11|50782|regulator of G-protein signaling 11	NM_001081069|Rgs11|50782|regulator of G-protein signaling 11	BC049910|Rgs11|50782|regulator of G-protein signaling 11
mm9_v1_chr14_-_70919994_70920083	0.0584357	NHLH1,2.p2	BC066062|Bmp1|12153|bone morphogenetic protein 1	AK220295|Bmp1|12153|bone morphogenetic protein 1	AK158218|Bmp1|12153|bone morphogenetic protein 1	AK154239|Bmp1|12153|bone morphogenetic protein 1	NM_009755|Bmp1|12153|bone morphogenetic protein 1
mm9_v1_chr2_-_173102033_173102038	0.0582504	NHLH1,2.p2	AK008976|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	AK136450|Pmepa1|65112|prostate transmembrane protein, androgen induced 1	NM_022995|Pmepa1|65112|prostate transmembrane protein, androgen induced 1
mm9_v1_chr16_-_34263272_34263285	0.0581779	NHLH1,2.p2	AK158544|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr8_+_73895190_73895211	0.0580499	NHLH1,2.p2	AK163762|Ocel1|77090|occludin/ELL domain containing 1	NM_029865|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr1_+_91041418_91041587	0.0578955	NHLH1,2.p2	AK185674|Sh3bp4|98402|SH3-domain binding protein 4	AK043259|Sh3bp4|98402|SH3-domain binding protein 4
mm9_v1_chr2_-_35056446_35056576	0.0578626	NHLH1,2.p2	AK165812|Rab14|68365|RAB14, member RAS oncogene family	AK013410|Rab14|68365|RAB14, member RAS oncogene family	AJ968955|Rab14|68365|RAB14, member RAS oncogene family	AJ968956|Rab14|68365|RAB14, member RAS oncogene family	AJ968957|Rab14|68365|RAB14, member RAS oncogene family	AJ968958|Rab14|68365|RAB14, member RAS oncogene family	AJ968959|Rab14|68365|RAB14, member RAS oncogene family	AJ968960|Rab14|68365|RAB14, member RAS oncogene family	AK168551|Rab14|68365|RAB14, member RAS oncogene family	AK169946|Rab14|68365|RAB14, member RAS oncogene family	AK168867|Rab14|68365|RAB14, member RAS oncogene family	AK169396|Rab14|68365|RAB14, member RAS oncogene family	BC025139|Rab14|68365|RAB14, member RAS oncogene family	AK002704|Rab14|68365|RAB14, member RAS oncogene family	BC056648|Rab14|68365|RAB14, member RAS oncogene family	AK043699|Rab14|68365|RAB14, member RAS oncogene family	AK135751|Rab14|68365|RAB14, member RAS oncogene family	AK133963|Rab14|68365|RAB14, member RAS oncogene family
mm9_v1_chr13_+_96095231_96095255	0.0578468	NHLH1,2.p2	BC016263|Zbed3|72114|zinc finger, BED domain containing 3
mm9_v1_chr8_+_87604829_87604904	0.0576046	NHLH1,2.p2	AK010893|BC056474|414077|cDNA sequence BC056474	BC089623|BC056474|414077|cDNA sequence BC056474	NM_001001493|BC056474|414077|cDNA sequence BC056474	BC024937|BC056474|414077|cDNA sequence BC056474	BC091742|BC056474|414077|cDNA sequence BC056474	BC056474|BC056474|414077|cDNA sequence BC056474
mm9_v1_chr7_-_104727924_104728026	0.0575894	NHLH1,2.p2	BC026557|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK007717|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK008195|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	AK007558|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	BC062811|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177945|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177946|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_001177947|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene	NM_183251|1810020D17Rik|66273|RIKEN cDNA 1810020D17 gene
mm9_v1_chr1_+_75139738_75139836	0.0573647	NHLH1,2.p2	AK158940|Fam134a|227298|family with sequence similarity 134, member A	AK152268|Fam134a|227298|family with sequence similarity 134, member A
mm9_v1_chr11_-_69734682_69734699	0.0566927	NHLH1,2.p2	AK185373|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr16_+_95924061_95924067	0.0566762	NHLH1,2.p2	AK128933|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK152750|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK143687|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK144974|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK151315|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153339|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK153478|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr5_-_34517234_34517339	0.0565702	NHLH1,2.p2	AK013062|Mxd4|17122|Max dimerization protein 4
mm9_v1_chr18_+_78012690_78012763	0.0564983	NHLH1,2.p2	AK169142|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK166812|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK152054|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK160043|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK098155|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151128|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168198|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151224|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151920|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK153167|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169308|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	BC055892|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK146797|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK150426|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK152890|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK164110|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK166709|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169080|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169084|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK043976|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK076572|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK151004|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK159491|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK167159|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168369|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168879|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168890|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168932|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169105|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169300|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK150843|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK153282|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK159540|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK159758|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK168617|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK169414|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	BC014854|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	BC020417|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	L01062|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	AK167863|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr19_+_9016466_9016538	0.0564462	NHLH1,2.p2	AK088158|Mta2|23942|metastasis-associated gene family, member 2	AK157717|Mta2|23942|metastasis-associated gene family, member 2	AF159259|Mta2|23942|metastasis-associated gene family, member 2
mm9_v1_chr9_-_120401664_120401781	0.0563493	NHLH1,2.p2	AK085969|D830035M03Rik|382114|RIKEN cDNA D830035M03 gene
mm9_v1_chr17_+_29175540_29175570	0.0563443	NHLH1,2.p2	AK182771|Srsf3|20383|serine/arginine-rich splicing factor 3
mm9_v1_chr8_-_122333416_122333530	0.056061	NHLH1,2.p2	AK216368|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr19_+_45122065_45122176	0.0556851	NHLH1,2.p2	NM_001178012|Sfxn3|94280|sideroflexin 3	NM_001178013|Sfxn3|94280|sideroflexin 3	NM_053197|Sfxn3|94280|sideroflexin 3	BC012208|Sfxn3|94280|sideroflexin 3
mm9_v1_chr8_-_109580546_109580561	0.0555745	NHLH1,2.p2	AB041610|Cog8|97484|component of oligomeric golgi complex 8
mm9_v1_chr9_+_43892984_43893007	0.0550291	NHLH1,2.p2	NM_198091|Usp2|53376|ubiquitin specific peptidase 2
mm9_v1_chr5_+_9100681_9100767	0.0549873	NHLH1,2.p2	AK140314|4930420K17Rik|652925|RIKEN cDNA 4930420K17 gene	NM_001081029|4930420K17Rik|652925|RIKEN cDNA 4930420K17 gene	AK087170|4930420K17Rik|652925|RIKEN cDNA 4930420K17 gene
mm9_v1_chr17_-_24769539_24769566	0.0549725	NHLH1,2.p2	AK147487|Tsc2|22084|tuberous sclerosis 2	AK171007|Tsc2|22084|tuberous sclerosis 2	U39818|Tsc2|22084|tuberous sclerosis 2	AK147016|Tsc2|22084|tuberous sclerosis 2	BC052449|Tsc2|22084|tuberous sclerosis 2	BC060701|Tsc2|22084|tuberous sclerosis 2	AK190188|Tsc2|22084|tuberous sclerosis 2	AK170589|Tsc2|22084|tuberous sclerosis 2	AK148062|Tsc2|22084|tuberous sclerosis 2
mm9_v1_chr11_-_20641455_20641486	0.0549183	NHLH1,2.p2	AK029681|Aftph|216549|aftiphilin	AK138793|Aftph|216549|aftiphilin	BC052036|Aftph|216549|aftiphilin	NM_181411|Aftph|216549|aftiphilin
mm9_v1_chr8_+_122386155_122386279	0.0544971	NHLH1,2.p2	AK164240|Klhl36|234796|kelch-like 36 (Drosophila)	AK164831|Klhl36|234796|kelch-like 36 (Drosophila)	AK157027|Klhl36|234796|kelch-like 36 (Drosophila)	BC025816|Klhl36|234796|kelch-like 36 (Drosophila)	NM_146219|Klhl36|234796|kelch-like 36 (Drosophila)	AK131135|Klhl36|234796|kelch-like 36 (Drosophila)
mm9_v1_chr4_+_62141084_62141100	0.0543619	NHLH1,2.p2	BC139079|Bspry|192120|B-box and SPRY domain containing	BC139080|Bspry|192120|B-box and SPRY domain containing	BC145535|Bspry|192120|B-box and SPRY domain containing	AK035588|Bspry|192120|B-box and SPRY domain containing	AK160930|Bspry|192120|B-box and SPRY domain containing	AJ276690|Bspry|192120|B-box and SPRY domain containing	NM_138653|Bspry|192120|B-box and SPRY domain containing
mm9_v1_chr7_-_88638540_88638668	0.0543312	NHLH1,2.p2	BC024722|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	AK134504|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	BC139378|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	BC139379|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	AY528675|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit	AK138496|Ap3b2|11775|adaptor-related protein complex 3, beta 2 subunit
mm9_v1_chr5_-_145908992_145909289	0.0541866	NHLH1,2.p2	AK216509|Ptcd1|71799|pentatricopeptide repeat domain 1	AK213622|Ptcd1|71799|pentatricopeptide repeat domain 1	AK004421|Ptcd1|71799|pentatricopeptide repeat domain 1	AK218479|Ptcd1|71799|pentatricopeptide repeat domain 1	AK166306|Ptcd1|71799|pentatricopeptide repeat domain 1
mm9_v1_chr11_+_62462155_62462185	0.0541791	NHLH1,2.p2	NM_175002|Mmgt2|216829|membrane magnesium transporter 2	BC096583|Mmgt2|216829|membrane magnesium transporter 2
mm9_v1_chr7_-_35015239_35015294	0.0540127	NHLH1,2.p2	AK164566|Gpi1|14751|glucose phosphate isomerase 1	AK171956|Gpi1|14751|glucose phosphate isomerase 1	AK159838|Gpi1|14751|glucose phosphate isomerase 1	AK031081|Gpi1|14751|glucose phosphate isomerase 1	BC088995|Gpi1|14751|glucose phosphate isomerase 1	BC157972|Gpi1|14751|glucose phosphate isomerase 1	BC172124|Gpi1|14751|glucose phosphate isomerase 1	AK133827|Gpi1|14751|glucose phosphate isomerase 1	M14220|Gpi1|14751|glucose phosphate isomerase 1	AK137805|Gpi1|14751|glucose phosphate isomerase 1	AK150341|Gpi1|14751|glucose phosphate isomerase 1	AK169681|Gpi1|14751|glucose phosphate isomerase 1	AK134890|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr9_+_56978554_56978597	0.0539911	NHLH1,2.p2	AK170642|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK049370|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK153935|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK171110|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK158387|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK163077|Man2c1|73744|mannosidase, alpha, class 2C, member 1	BC016253|Man2c1|73744|mannosidase, alpha, class 2C, member 1	NM_028636|Man2c1|73744|mannosidase, alpha, class 2C, member 1	AK171599|Man2c1|73744|mannosidase, alpha, class 2C, member 1
mm9_v1_chr6_-_50546585_50546591	0.0539706	NHLH1,2.p2	AK161510|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	AK014840|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	NM_027564|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene	BC055110|4921507P07Rik|70821|RIKEN cDNA 4921507P07 gene
mm9_v1_chr9_+_70390703_70390723	0.0538328	NHLH1,2.p2	AK162780|Sltm|66660|SAFB-like, transcription modulator	AK017839|Sltm|66660|SAFB-like, transcription modulator
mm9_v1_chr17_-_25969789_25969866	0.0537304	NHLH1,2.p2	BC020110|Stub1|56424|STIP1 homology and U-Box containing protein 1	AF129086|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK004464|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK045776|Stub1|56424|STIP1 homology and U-Box containing protein 1	AK002752|Stub1|56424|STIP1 homology and U-Box containing protein 1
mm9_v1_chr11_+_98902810_98903140	0.0534901	NHLH1,2.p2	
mm9_v1_chr11_+_57332162_57332229	0.0534063	NHLH1,2.p2	AK076071|Mfap3|216760|microfibrillar-associated protein 3	NM_145426|Mfap3|216760|microfibrillar-associated protein 3	NM_180599|Mfap3|216760|microfibrillar-associated protein 3	AK042988|Mfap3|216760|microfibrillar-associated protein 3	AK080405|Mfap3|216760|microfibrillar-associated protein 3	AK155122|Mfap3|216760|microfibrillar-associated protein 3	BC006828|Mfap3|216760|microfibrillar-associated protein 3
mm9_v1_chr18_+_84257471_84257589	0.0532193	NHLH1,2.p2	AK083082|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK047559|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	AK081988|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116427|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	BC116428|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2	NM_146090|Zadh2|225791|zinc binding alcohol dehydrogenase, domain containing 2
mm9_v1_chr5_-_109058768_109058782	0.0531972	NHLH1,2.p2	AK133581|Gak|231580|cyclin G associated kinase	AK150112|Gak|231580|cyclin G associated kinase	AK166682|Gak|231580|cyclin G associated kinase
mm9_v1_chr11_+_101107691_101107706	0.0531451	NHLH1,2.p2	BC036348|Vps25|28084|vacuolar protein sorting 25 (yeast)
mm9_v1_chr1_+_78654585_78654623	0.053128	NHLH1,2.p2	AY316161|Utp14b|195434|UTP14, U3 small nucleolar ribonucleoprotein, homolog B (yeast)
mm9_v1_chrX_-_92361778_92361824	0.0530831	NHLH1,2.p2	AK038840|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK122280|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	AK139416|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9	NM_001033329|Arhgef9|236915|CDC42 guanine nucleotide exchange factor (GEF) 9
mm9_v1_chr2_-_119584234_119584260	0.0530333	NHLH1,2.p2	X07984|Ltk|17005|leukocyte tyrosine kinase	X52621|Ltk|17005|leukocyte tyrosine kinase	BC055898|Ltk|17005|leukocyte tyrosine kinase	AK157478|Ltk|17005|leukocyte tyrosine kinase	BC047138|Ltk|17005|leukocyte tyrosine kinase	NM_008523|Ltk|17005|leukocyte tyrosine kinase	NM_206941|Ltk|17005|leukocyte tyrosine kinase
mm9_v1_chr7_+_88358458_88358518	0.0528302	NHLH1,2.p2	AK148238|Pde8a|18584|phosphodiesterase 8A	AK149561|Pde8a|18584|phosphodiesterase 8A
mm9_v1_chr3_+_159158396_159158460	0.052805	NHLH1,2.p2	NM_001172092|Depdc1a|76131|DEP domain containing 1a	NM_001172093|Depdc1a|76131|DEP domain containing 1a	NM_029523|Depdc1a|76131|DEP domain containing 1a	BC023934|Depdc1a|76131|DEP domain containing 1a	AK088719|Depdc1a|76131|DEP domain containing 1a	AK146458|Depdc1a|76131|DEP domain containing 1a	AK050456|Depdc1a|76131|DEP domain containing 1a
mm9_v1_chr11_+_87551028_87551046	0.0527677	NHLH1,2.p2	BC141092|Supt4h1|20922|suppressor of Ty 4 homolog 1 (S. cerevisiae)
mm9_v1_chr7_-_73834420_73834446	0.0526201	NHLH1,2.p2	BC085155|Asb7|117589|ankyrin repeat and SOCS box-containing 7	NM_080443|Asb7|117589|ankyrin repeat and SOCS box-containing 7
mm9_v1_chr11_+_87394647_87394667	0.0525593	NHLH1,2.p2	AB078010|Sept4|18952|septin 4
mm9_v1_chr14_+_67487686_67487690	0.0525059	NHLH1,2.p2	AK135012|Gm5464|432870|predicted gene 5464	NM_001034881|Gm5464|432870|predicted gene 5464	BC147346|Gm5464|432870|predicted gene 5464	BC147347|Gm5464|432870|predicted gene 5464
mm9_v1_chr6_-_145198693_145198778	0.0524829	NHLH1,2.p2	BC119495|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC004642|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	BC010202|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK155064|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	AK164065|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog	NM_021284|Kras|16653|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog
mm9_v1_chr15_-_84387921_84388066	0.0523523	NHLH1,2.p2	BC058638|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr15_+_81977766_81977845	0.0523268	NHLH1,2.p2	AK217643|Srebf2|20788|sterol regulatory element binding factor 2	AF374267|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr19_-_4333914_4333961	0.0522216	NHLH1,2.p2	
mm9_v1_chr10_+_94151450_94151588	0.0522209	NHLH1,2.p2	AK011135|Ccdc41|77048|coiled-coil domain containing 41	BC070464|Ccdc41|77048|coiled-coil domain containing 41	NM_029852|Ccdc41|77048|coiled-coil domain containing 41
mm9_v1_chr18_-_42900793_42900846	0.0521926	NHLH1,2.p2	AF512670|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr2_-_152142120_152142187	0.0520113	NHLH1,2.p2	
mm9_v1_chr13_+_83861149_83861193	0.0519275	NHLH1,2.p2	
mm9_v1_chr19_+_42245160_42245205	0.0518841	NHLH1,2.p2	AK048822|Zfyve27|319740|zinc finger, FYVE domain containing 27
mm9_v1_chr7_-_19865386_19865397	0.0518124	NHLH1,2.p2	BC096372|Ppm1n|232941|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	AK044232|Ppm1n|232941|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	AK044334|Ppm1n|232941|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	NM_177691|Ppm1n|232941|protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)
mm9_v1_chr9_-_44543245_44543320	0.0518057	NHLH1,2.p2	BC058712|Phldb1|102693|pleckstrin homology-like domain, family B, member 1	NM_153537|Phldb1|102693|pleckstrin homology-like domain, family B, member 1
mm9_v1_chr13_+_67274117_67274142	0.0517584	NHLH1,2.p2	NM_001013769|Rsl1|380855|regulator of sex limited protein 1	AK164698|Rsl1|380855|regulator of sex limited protein 1	BC103788|Rsl1|380855|regulator of sex limited protein 1
mm9_v1_chr6_-_128305798_128305874	0.0514356	NHLH1,2.p2	BC060068|Tulp3|22158|tubby-like protein 3	AB016963|Tulp3|22158|tubby-like protein 3	AF045582|Tulp3|22158|tubby-like protein 3	AK035363|Tulp3|22158|tubby-like protein 3	AK009482|Tulp3|22158|tubby-like protein 3	AK142527|Tulp3|22158|tubby-like protein 3	NM_011657|Tulp3|22158|tubby-like protein 3
mm9_v1_chr19_-_42203380_42203559	0.0513245	NHLH1,2.p2	AK009243|Avpi1|69534|arginine vasopressin-induced 1	NM_027106|Avpi1|69534|arginine vasopressin-induced 1	BC027646|Avpi1|69534|arginine vasopressin-induced 1
mm9_v1_chr4_-_47070062_47070177	0.0513075	NHLH1,2.p2	BC060663|Anks6|75691|ankyrin repeat and sterile alpha motif domain containing 6	NM_001024136|Anks6|75691|ankyrin repeat and sterile alpha motif domain containing 6
mm9_v1_chr16_+_16983500_16983501	0.051219	NHLH1,2.p2	AK035386|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr19_+_23761879_23761891	0.0511969	NHLH1,2.p2	NM_028208|Ptar1|72351|protein prenyltransferase alpha subunit repeat containing 1
mm9_v1_chr11_+_115106897_115107042	0.0511957	NHLH1,2.p2	
mm9_v1_chr5_-_34512059_34512111	0.0511538	NHLH1,2.p2	BC025497|Haus3|231123|HAUS augmin-like complex, subunit 3	BC027393|Haus3|231123|HAUS augmin-like complex, subunit 3	NM_146159|Haus3|231123|HAUS augmin-like complex, subunit 3	BC141101|Poln|272158|DNA polymerase N	BC145378|Poln|272158|DNA polymerase N	AK133063|Poln|272158|DNA polymerase N	BC023882|Haus3|231123|HAUS augmin-like complex, subunit 3	AK049414|Haus3|231123|HAUS augmin-like complex, subunit 3	AY135562|Poln|272158|DNA polymerase N	NM_181857|Poln|272158|DNA polymerase N
mm9_v1_chr5_+_7960430_7960493	0.0510337	NHLH1,2.p2	AK040760|Steap4|117167|STEAP family member 4	AJ319746|Steap4|117167|STEAP family member 4	BC006651|Steap4|117167|STEAP family member 4	NM_054098|Steap4|117167|STEAP family member 4	AY029778|Steap4|117167|STEAP family member 4
mm9_v1_chr7_-_125273061_125273141	0.0510007	NHLH1,2.p2	BC046792|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF133669|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF223953|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	BC010196|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK152885|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK090001|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK150042|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK151272|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK151507|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK152565|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK163655|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167912|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK168245|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK169191|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK150507|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK154644|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167872|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK168172|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK154355|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AF172088|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	AK167888|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1	NM_019419|Arl6ip1|54208|ADP-ribosylation factor-like 6 interacting protein 1
mm9_v1_chr12_+_114214947_114214965	0.0506901	NHLH1,2.p2	AK146991|Btbd6|399566|BTB (POZ) domain containing 6
mm9_v1_chr9_-_48288689_48288691	0.0506786	NHLH1,2.p2	AK172641|Rexo2|104444|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm9_v1_chr16_-_4420415_4420498	0.0505049	NHLH1,2.p2	AK156940|Adcy9|11515|adenylate cyclase 9
mm9_v1_chr16_-_28929698_28929810	0.0504469	NHLH1,2.p2	BC085092|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	BC068245|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene	NM_177718|1600021P15Rik|239796|RIKEN cDNA 1600021P15 gene
mm9_v1_chr13_+_23830671_23830686	0.0503519	NHLH1,2.p2	AK155502|Hist1h1c|50708|histone cluster 1, H1c	BC089604|Hist1h1c|50708|histone cluster 1, H1c	NM_015786|Hist1h1c|50708|histone cluster 1, H1c	AK002321|Hist1h1c|50708|histone cluster 1, H1c
mm9_v1_chr18_-_61946299_61946348	0.0501814	NHLH1,2.p2	AK053714|Afap1l1|106877|actin filament associated protein 1-like 1	AK035227|Afap1l1|106877|actin filament associated protein 1-like 1	NM_178928|Afap1l1|106877|actin filament associated protein 1-like 1
mm9_v1_chr5_+_31167731_31167889	0.0500701	NHLH1,2.p2	AK210919|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr9_+_57369044_57369118	0.0500445	NHLH1,2.p2	BC003831|Cox5a|12858|cytochrome c oxidase, subunit Va	BC034302|Cox5a|12858|cytochrome c oxidase, subunit Va	AK018723|Cox5a|12858|cytochrome c oxidase, subunit Va	X15963|Cox5a|12858|cytochrome c oxidase, subunit Va
mm9_v1_chr7_+_133572567_133572631	0.0500339	NHLH1,2.p2	AK089938|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK144836|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2	AK157832|Rabep2|70314|rabaptin, RAB GTPase binding effector protein 2
mm9_v1_chr9_-_18190355_18190479	0.0500172	NHLH1,2.p2	BC108995|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	BC108996|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	AY243507|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	NM_028279|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2	AK133611|Naalad2|72560|N-acetylated alpha-linked acidic dipeptidase 2
mm9_v1_chr6_+_15670660_15670769	0.0498299	NHLH1,2.p2	AK165016|Mdfic|16543|MyoD family inhibitor domain containing	NM_175088|Mdfic|16543|MyoD family inhibitor domain containing	AK086117|Mdfic|16543|MyoD family inhibitor domain containing	AK172522|Mdfic|16543|MyoD family inhibitor domain containing	AK166462|Mdfic|16543|MyoD family inhibitor domain containing	AK080178|Mdfic|16543|MyoD family inhibitor domain containing	AK134050|Mdfic|16543|MyoD family inhibitor domain containing	AK048821|Mdfic|16543|MyoD family inhibitor domain containing
mm9_v1_chr2_+_130732250_130732274	0.0497656	NHLH1,2.p2	BC141054|Atrn|11990|attractin	AF119821|Atrn|11990|attractin
mm9_v1_chr15_-_89145631_89145745	0.0494916	NHLH1,2.p2	BC157935|Sbf1|77980|SET binding factor 1	BC158013|Sbf1|77980|SET binding factor 1	BC172094|Sbf1|77980|SET binding factor 1	AK129485|Sbf1|77980|SET binding factor 1	AK147332|Sbf1|77980|SET binding factor 1	NM_001081030|Sbf1|77980|SET binding factor 1	NM_001170561|Sbf1|77980|SET binding factor 1
mm9_v1_chr3_-_100489321_100489392	0.0494654	NHLH1,2.p2	AK013515|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03457|Man1a2|17156|mannosidase, alpha, class 1A, member 2	U03458|Man1a2|17156|mannosidase, alpha, class 1A, member 2
mm9_v1_chr14_+_124059330_124059403	0.0491423	NHLH1,2.p2	AK051773|Itgbl1|223272|integrin, beta-like 1	NM_145467|Itgbl1|223272|integrin, beta-like 1	BC020152|Itgbl1|223272|integrin, beta-like 1	AK029068|Itgbl1|223272|integrin, beta-like 1
mm9_v1_chrX_+_53627743_53627791	0.0490797	NHLH1,2.p2	AK078069|Ncrna00086|320237|non-protein coding RNA 86	AK139449|Ncrna00086|320237|non-protein coding RNA 86	BC052359|Ncrna00086|320237|non-protein coding RNA 86
mm9_v1_chr16_-_94592586_94592621	0.0489803	NHLH1,2.p2	AF216309|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	BC038252|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_001159617|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P	NM_019543|Pigp|56176|phosphatidylinositol glycan anchor biosynthesis, class P
mm9_v1_chr5_-_134718500_134718616	0.0489651	NHLH1,2.p2	AK183312|Gtf2i|14886|general transcription factor II I	AK211276|Gtf2i|14886|general transcription factor II I
mm9_v1_chr4_+_122513481_122513506	0.0489597	NHLH1,2.p2	AK151107|Ppt1|19063|palmitoyl-protein thioesterase 1	AK152940|Ppt1|19063|palmitoyl-protein thioesterase 1	NM_008917|Ppt1|19063|palmitoyl-protein thioesterase 1	AK152474|Ppt1|19063|palmitoyl-protein thioesterase 1	AK014561|Ppt1|19063|palmitoyl-protein thioesterase 1	AK153106|Ppt1|19063|palmitoyl-protein thioesterase 1	AK153316|Ppt1|19063|palmitoyl-protein thioesterase 1	AK171668|Ppt1|19063|palmitoyl-protein thioesterase 1	AF087568|Ppt1|19063|palmitoyl-protein thioesterase 1	AK169658|Ppt1|19063|palmitoyl-protein thioesterase 1	AK151055|Ppt1|19063|palmitoyl-protein thioesterase 1	AK148314|Ppt1|19063|palmitoyl-protein thioesterase 1	AF326557|Ppt1|19063|palmitoyl-protein thioesterase 1	AF326558|Ppt1|19063|palmitoyl-protein thioesterase 1	AK169579|Ppt1|19063|palmitoyl-protein thioesterase 1
mm9_v1_chr18_-_40378992_40378996	0.0489526	NHLH1,2.p2	BC055301|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr18_-_40379041_40379060	0.048856	NHLH1,2.p2	NM_023311|Yipf5|67180|Yip1 domain family, member 5
mm9_v1_chr5_+_115018259_115018259	0.0487036	NHLH1,2.p2	BC057022|BC057022|433940|cDNA sequence BC057022	NM_001004180|BC057022|433940|cDNA sequence BC057022
mm9_v1_chr10_-_90586419_90586508	0.0486759	NHLH1,2.p2	
mm9_v1_chr12_+_80398268_80398337	0.0484503	NHLH1,2.p2	AK032913|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	NM_009014|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)	AK015771|Rad51l1|19363|RAD51-like 1 (S. cerevisiae)
mm9_v1_chr11_-_84326869_84327030	0.048336	NHLH1,2.p2	AY306199|Aatf|56321|apoptosis antagonizing transcription factor	BC025080|Aatf|56321|apoptosis antagonizing transcription factor	AK141334|Aatf|56321|apoptosis antagonizing transcription factor	AF222801|Aatf|56321|apoptosis antagonizing transcription factor	NM_019816|Aatf|56321|apoptosis antagonizing transcription factor	AK077789|Aatf|56321|apoptosis antagonizing transcription factor
mm9_v1_chr13_+_74487763_74487789	0.048314	NHLH1,2.p2	AK164539|Ccdc127|67433|coiled-coil domain containing 127	NM_001168658|Ccdc127|67433|coiled-coil domain containing 127	NM_001168659|Ccdc127|67433|coiled-coil domain containing 127	NM_024201|Ccdc127|67433|coiled-coil domain containing 127	AK170932|Ccdc127|67433|coiled-coil domain containing 127	AK002564|Ccdc127|67433|coiled-coil domain containing 127
mm9_v1_chr1_-_184447489_184447526	0.0481567	NHLH1,2.p2	Y10139|Capn2|12334|calpain 2
mm9_v1_chr19_+_32463705_32463724	0.0477249	NHLH1,2.p2	AK035700|2700046G09Rik|67188|RIKEN cDNA 2700046G09 gene	AK012385|2700046G09Rik|67188|RIKEN cDNA 2700046G09 gene	AK019229|2700046G09Rik|67188|RIKEN cDNA 2700046G09 gene
mm9_v1_chr1_-_187153269_187153279	0.0477019	NHLH1,2.p2	AK085714|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK043590|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK048653|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	AK078183|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial	NM_198653|Iars2|381314|isoleucine-tRNA synthetase 2, mitochondrial
mm9_v1_chr6_-_71582562_71582698	0.0476288	NHLH1,2.p2	BC059264|Kdm3a|104263|lysine (K)-specific demethylase 3A	AK144825|Kdm3a|104263|lysine (K)-specific demethylase 3A	NM_173001|Kdm3a|104263|lysine (K)-specific demethylase 3A
mm9_v1_chr4_-_61869579_61869584	0.0474239	NHLH1,2.p2	NM_009554|Zfp37|22696|zinc finger protein 37
mm9_v1_chr1_-_157882999_157883288	0.047403	NHLH1,2.p2	AK152751|Tor1aip1|208263|torsin A interacting protein 1	AK139709|Tor1aip1|208263|torsin A interacting protein 1
mm9_v1_chr7_-_135137189_135137272	0.047371	NHLH1,2.p2	AF310104|Pycard|66824|PYD and CARD domain containing	BC008252|Pycard|66824|PYD and CARD domain containing	AB032249|Pycard|66824|PYD and CARD domain containing	AK152677|Pycard|66824|PYD and CARD domain containing	AK007742|Pycard|66824|PYD and CARD domain containing	AK009852|Pycard|66824|PYD and CARD domain containing	AK018682|Pycard|66824|PYD and CARD domain containing
mm9_v1_chr12_+_101202708_101202902	0.0473256	NHLH1,2.p2	NM_001164426|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_001164427|Kcnk13|217826|potassium channel, subfamily K, member 13	NM_146037|Kcnk13|217826|potassium channel, subfamily K, member 13	AK158645|Kcnk13|217826|potassium channel, subfamily K, member 13	AK155396|Kcnk13|217826|potassium channel, subfamily K, member 13	AK089394|Kcnk13|217826|potassium channel, subfamily K, member 13	AK134730|Kcnk13|217826|potassium channel, subfamily K, member 13	AK170504|Kcnk13|217826|potassium channel, subfamily K, member 13
mm9_v1_chr19_-_58935470_58935484	0.0471058	NHLH1,2.p2	AY196789|Hspa12a|73442|heat shock protein 12A	AK141925|Hspa12a|73442|heat shock protein 12A	NM_175199|Hspa12a|73442|heat shock protein 12A
mm9_v1_chr11_-_94183188_94183309	0.0470314	NHLH1,2.p2	AK014362|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	BC009092|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	NM_026313|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK078090|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK151228|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK151839|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)	AK019464|Luc7l3|67684|LUC7-like 3 (S. cerevisiae)
mm9_v1_chr13_+_49703402_49703439	0.0469916	NHLH1,2.p2	AK028300|Ogn|18295|osteoglycin	AK160760|Ogn|18295|osteoglycin	AK053650|Ogn|18295|osteoglycin	NM_008760|Ogn|18295|osteoglycin
mm9_v1_chr8_-_122334083_122334199	0.0468807	NHLH1,2.p2	AK008597|Cotl1|72042|coactosin-like 1 (Dictyostelium)
mm9_v1_chr1_+_135027742_135027959	0.0466115	NHLH1,2.p2	NM_133819|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK082957|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK170862|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK167565|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC006897|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	BC058078|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm9_v1_chr8_-_113426341_113426387	0.0465985	NHLH1,2.p2	AK140503|Fuk|234730|fucokinase	AK164340|Fuk|234730|fucokinase	AJ297482|Fuk|234730|fucokinase	AJ534942|Fuk|234730|fucokinase	AY223865|Fuk|234730|fucokinase	NM_172283|Fuk|234730|fucokinase	NM_181666|Fuk|234730|fucokinase	AK161763|Fuk|234730|fucokinase
mm9_v1_chr7_-_107520359_107520405	0.0464021	NHLH1,2.p2	AK146051|Ppme1|72590|protein phosphatase methylesterase 1	BC029064|Ppme1|72590|protein phosphatase methylesterase 1	BC014867|Ppme1|72590|protein phosphatase methylesterase 1	NM_028292|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr2_-_104334728_104334748	0.0463878	NHLH1,2.p2	AK140130|Hipk3|15259|homeodomain interacting protein kinase 3
mm9_v1_chr5_+_91201521_91201531	0.0463261	NHLH1,2.p2	BC061111|Pf4|56744|platelet factor 4
mm9_v1_chr11_-_70817905_70817971	0.0460787	NHLH1,2.p2	BC027842|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	BC052172|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK035177|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	NM_178367|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33	AK087592|Dhx33|216877|DEAH (Asp-Glu-Ala-His) box polypeptide 33
mm9_v1_chr1_-_128727208_128727208	0.0460063	NHLH1,2.p2	NM_001081756|Nckap5|210356|NCK-associated protein 5	NM_176957|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr4_-_46417054_46417104	0.0459545	NHLH1,2.p2	AF269248|Hemgn|93966|hemogen	NM_053149|Hemgn|93966|hemogen	AK171906|Hemgn|93966|hemogen
mm9_v1_chr18_+_78012506_78012506	0.0459313	NHLH1,2.p2	NM_007505|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr17_-_36169573_36169660	0.045758	NHLH1,2.p2	AF100699|H2-T23|15040|histocompatibility 2, T region locus 23	AF100700|H2-T23|15040|histocompatibility 2, T region locus 23	AF100702|H2-T23|15040|histocompatibility 2, T region locus 23	AF057279|H2-T23|15040|histocompatibility 2, T region locus 23	AF082510|H2-T23|15040|histocompatibility 2, T region locus 23	BC099472|H2-T23|15040|histocompatibility 2, T region locus 23	AB359230|H2-T23|15040|histocompatibility 2, T region locus 23	AK133502|H2-T23|15040|histocompatibility 2, T region locus 23	M11284|H2-T23|15040|histocompatibility 2, T region locus 23	NM_010398|H2-T23|15040|histocompatibility 2, T region locus 23
mm9_v1_chr5_-_111082269_111082383	0.0457353	NHLH1,2.p2	AK184847|Noc4l|100608|nucleolar complex associated 4 homolog (S. cerevisiae)	AK172310|Noc4l|100608|nucleolar complex associated 4 homolog (S. cerevisiae)
mm9_v1_chr15_+_84062273_84062503	0.0456689	NHLH1,2.p2	BC158113|Parvb|170736|parvin, beta	BC138747|Parvb|170736|parvin, beta	BC138748|Parvb|170736|parvin, beta	NM_133167|Parvb|170736|parvin, beta	AK143614|Parvb|170736|parvin, beta	AF237770|Parvb|170736|parvin, beta	AK147758|Parvb|170736|parvin, beta
mm9_v1_chr2_-_6642489_6642726	0.045661	NHLH1,2.p2	AK137555|Celf2|14007|CUGBP, Elav-like family member 2	AK151818|Celf2|14007|CUGBP, Elav-like family member 2	AK152628|Celf2|14007|CUGBP, Elav-like family member 2	AK153267|Celf2|14007|CUGBP, Elav-like family member 2	AK162651|Celf2|14007|CUGBP, Elav-like family member 2	AK172648|Celf2|14007|CUGBP, Elav-like family member 2	AK169542|Celf2|14007|CUGBP, Elav-like family member 2
mm9_v1_chr5_-_121822213_121822316	0.0456579	NHLH1,2.p2	AK211451|Trafd1|231712|TRAF type zinc finger domain containing 1	AK212088|Trafd1|231712|TRAF type zinc finger domain containing 1
mm9_v1_chr16_+_18071099_18071220	0.0454028	NHLH1,2.p2	AK187760|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK219346|Dgcr6|13353|DiGeorge syndrome critical region gene 6	AK219449|Dgcr6|13353|DiGeorge syndrome critical region gene 6
mm9_v1_chr13_+_49516585_49516657	0.0453429	NHLH1,2.p2	AK167467|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	AK029085|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	AK160092|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase	BC024630|Ippk|75678|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm9_v1_chr10_-_80170648_80170694	0.0453344	NHLH1,2.p2	
mm9_v1_chr17_+_56396215_56396281	0.0453048	NHLH1,2.p2	NM_010192|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK129000|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK147879|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK155363|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK034412|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK080978|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC054382|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC009161|Fem1a|14154|feminization 1 homolog a (C. elegans)	AK005041|Fem1a|14154|feminization 1 homolog a (C. elegans)	BC110669|Fem1a|14154|feminization 1 homolog a (C. elegans)
mm9_v1_chr8_+_86424565_86424613	0.0452018	NHLH1,2.p2	BC085138|Lphn1|330814|latrophilin 1
mm9_v1_chr11_-_116713532_116713613	0.0450433	NHLH1,2.p2	AF250135|Srsf2|20382|serine/arginine-rich splicing factor 2
mm9_v1_chr7_+_4967081_4967115	0.0447562	NHLH1,2.p2	AK154328|Zfp524|66056|zinc finger protein 524	BC019995|Zfp524|66056|zinc finger protein 524	AK011620|Zfp524|66056|zinc finger protein 524	NM_025324|Zfp524|66056|zinc finger protein 524	AK009053|Zfp524|66056|zinc finger protein 524	AK002594|Zfp524|66056|zinc finger protein 524
mm9_v1_chr18_+_77424738_77424806	0.0446606	NHLH1,2.p2	X98014|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	AK078670|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	AK162549|St8sia5|225742|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm9_v1_chr1_-_64663716_64663821	0.0446219	NHLH1,2.p2	AK033578|Fam119a|67099|family with sequence similarity 119, member A	NM_025964|Fam119a|67099|family with sequence similarity 119, member A	AK009673|Fam119a|67099|family with sequence similarity 119, member A	AK009675|Fam119a|67099|family with sequence similarity 119, member A	AK009678|Fam119a|67099|family with sequence similarity 119, member A	AK009679|Fam119a|67099|family with sequence similarity 119, member A	AK009680|Fam119a|67099|family with sequence similarity 119, member A	AK009682|Fam119a|67099|family with sequence similarity 119, member A	AK011433|Fam119a|67099|family with sequence similarity 119, member A
mm9_v1_chr7_-_35015309_35015367	0.0445364	NHLH1,2.p2	AK147124|Gpi1|14751|glucose phosphate isomerase 1	NM_008155|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr16_+_95923988_95924060	0.044483	NHLH1,2.p2	NM_011809|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain	AK038348|Ets2|23872|E26 avian leukemia oncogene 2, 3' domain
mm9_v1_chr11_-_97521633_97521716	0.0443687	NHLH1,2.p2	AK052674|LOC432596|432596|similar to Als2 protein
mm9_v1_chr13_-_115891917_115891936	0.0442972	NHLH1,2.p2	AK137169|Itga1|109700|integrin alpha 1
mm9_v1_chr19_+_18706439_18706451	0.0442404	NHLH1,2.p2	AK169962|BC016495|225994|cDNA sequence BC016495
mm9_v1_chrX_-_103123825_103123915	0.0440733	NHLH1,2.p2	AK172134|Atrx|22589|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm9_v1_chr11_+_78059452_78059655	0.0440253	NHLH1,2.p2	AK002496|Sdf2|20316|stromal cell derived factor 2	BC062881|Sdf2|20316|stromal cell derived factor 2	BC087871|Sdf2|20316|stromal cell derived factor 2	D50646|Sdf2|20316|stromal cell derived factor 2
mm9_v1_chr9_+_121628527_121628572	0.0439991	NHLH1,2.p2	BC048414|Nktr|18087|natural killer tumor recognition sequence	AK035582|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr9_+_58884368_58884381	0.0439327	NHLH1,2.p2	
mm9_v1_chr18_+_61714974_61715001	0.0438531	NHLH1,2.p2	AK076264|Csnk1a1|93687|casein kinase 1, alpha 1	AK141421|Csnk1a1|93687|casein kinase 1, alpha 1	AK078398|Csnk1a1|93687|casein kinase 1, alpha 1	AK019176|Csnk1a1|93687|casein kinase 1, alpha 1	AK019411|Csnk1a1|93687|casein kinase 1, alpha 1	AK166429|Csnk1a1|93687|casein kinase 1, alpha 1	AK147165|Csnk1a1|93687|casein kinase 1, alpha 1	AK152387|Csnk1a1|93687|casein kinase 1, alpha 1
mm9_v1_chr9_+_25060152_25060278	0.0434308	NHLH1,2.p2	NM_009859|Sept7|235072|septin 7	BC058587|Sept7|235072|septin 7	AK141572|Sept7|235072|septin 7	AK147986|Sept7|235072|septin 7	AK088997|Sept7|235072|septin 7	AK144127|Sept7|235072|septin 7	AK220447|Sept7|235072|septin 7
mm9_v1_chr4_+_116393559_116393581	0.0431848	NHLH1,2.p2	AK047755|Tesk2|230661|testis-specific kinase 2	NM_146151|Tesk2|230661|testis-specific kinase 2	AK031814|Tesk2|230661|testis-specific kinase 2	AK053368|Tesk2|230661|testis-specific kinase 2	BC029766|Tesk2|230661|testis-specific kinase 2
mm9_v1_chr5_+_91201538_91201542	0.0431237	NHLH1,2.p2	AB017491|Pf4|56744|platelet factor 4
mm9_v1_chr9_-_108551631_108551731	0.0430138	NHLH1,2.p2	AK165028|Arih2|23807|ariadne homolog 2 (Drosophila)	AK149936|Arih2|23807|ariadne homolog 2 (Drosophila)	BC051998|Arih2|23807|ariadne homolog 2 (Drosophila)	BC052422|Arih2|23807|ariadne homolog 2 (Drosophila)	NM_011790|Arih2|23807|ariadne homolog 2 (Drosophila)	AK011094|Arih2|23807|ariadne homolog 2 (Drosophila)	AK168055|Arih2|23807|ariadne homolog 2 (Drosophila)
mm9_v1_chr3_-_141645214_141645214	0.0429877	NHLH1,2.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr5_+_140981515_140981584	0.0429291	NHLH1,2.p2	NM_021528|Chst12|59031|carbohydrate sulfotransferase 12	AK142155|Chst12|59031|carbohydrate sulfotransferase 12	BC003201|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr6_+_121586190_121586250	0.0428101	NHLH1,2.p2	NM_175628|A2m|232345|alpha-2-macroglobulin	AY185125|A2m|232345|alpha-2-macroglobulin	BC072642|A2m|232345|alpha-2-macroglobulin
mm9_v1_chr13_-_54789548_54789560	0.0424979	NHLH1,2.p2	AK171943|Rnf44|105239|ring finger protein 44	AK172257|Rnf44|105239|ring finger protein 44	NM_001146027|Rnf44|105239|ring finger protein 44
mm9_v1_chr19_-_43749067_43749205	0.0424176	NHLH1,2.p2	AF377993|Slc25a28|246696|solute carrier family 25, member 28	AF377994|Slc25a28|246696|solute carrier family 25, member 28
mm9_v1_chr1_+_172574662_172574663	0.0423582	NHLH1,2.p2	AK042424|Olfml2b|320078|olfactomedin-like 2B	NM_177068|Olfml2b|320078|olfactomedin-like 2B
mm9_v1_chr10_+_74646587_74646710	0.0423478	NHLH1,2.p2	
mm9_v1_chr7_+_106529978_106530041	0.0422267	NHLH1,2.p2	AK141189|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr2_-_171868868_171868965	0.042032	NHLH1,2.p2	BC094540|Cbln4|228942|cerebellin 4 precursor protein	AK032621|Cbln4|228942|cerebellin 4 precursor protein	NM_175631|Cbln4|228942|cerebellin 4 precursor protein
mm9_v1_chr4_+_19935558_19935623	0.0418062	NHLH1,2.p2	AK050374|Ttpa|50500|tocopherol (alpha) transfer protein	BC099869|Ttpa|50500|tocopherol (alpha) transfer protein	BC099870|Ttpa|50500|tocopherol (alpha) transfer protein	BC099871|Ttpa|50500|tocopherol (alpha) transfer protein	NM_015767|Ttpa|50500|tocopherol (alpha) transfer protein	BC099868|Ttpa|50500|tocopherol (alpha) transfer protein	AF218416|Ttpa|50500|tocopherol (alpha) transfer protein	AK004882|Ttpa|50500|tocopherol (alpha) transfer protein
mm9_v1_chr5_-_136254107_136254254	0.0417367	NHLH1,2.p2	BC045148|Styxl1|76571|serine/threonine/tyrosine interacting-like 1	AK005858|Styxl1|76571|serine/threonine/tyrosine interacting-like 1	AK005599|Styxl1|76571|serine/threonine/tyrosine interacting-like 1	AK161310|Styxl1|76571|serine/threonine/tyrosine interacting-like 1	NM_029659|Styxl1|76571|serine/threonine/tyrosine interacting-like 1
mm9_v1_chr6_+_34334201_34334334	0.0415784	NHLH1,2.p2	AK075865|Akr1b10|67861|aldo-keto reductase family 1, member B10 (aldose reductase)	NM_172398|Akr1b10|67861|aldo-keto reductase family 1, member B10 (aldose reductase)	BC026843|Akr1b10|67861|aldo-keto reductase family 1, member B10 (aldose reductase)	AK087002|Akr1b10|67861|aldo-keto reductase family 1, member B10 (aldose reductase)	AK082777|Akr1b10|67861|aldo-keto reductase family 1, member B10 (aldose reductase)	AK019906|Akr1b10|67861|aldo-keto reductase family 1, member B10 (aldose reductase)	AK169490|Akr1b10|67861|aldo-keto reductase family 1, member B10 (aldose reductase)
mm9_v1_chr5_-_34125155_34125234	0.0414866	NHLH1,2.p2	AK193705|Letm1|56384|leucine zipper-EF-hand containing transmembrane protein 1
mm9_v1_chr11_-_115569814_115569935	0.0414083	NHLH1,2.p2	AK155800|Grb2|14784|growth factor receptor bound protein 2	AK166142|Grb2|14784|growth factor receptor bound protein 2	AK148148|Grb2|14784|growth factor receptor bound protein 2	AK172002|Grb2|14784|growth factor receptor bound protein 2	BC052377|Grb2|14784|growth factor receptor bound protein 2	NM_008163|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr13_+_21570775_21570839	0.0413921	NHLH1,2.p2	NM_001039115|Zkscan4|544922|zinc finger with KRAB and SCAN domains 4	BC141222|Zkscan4|544922|zinc finger with KRAB and SCAN domains 4
mm9_v1_chr10_-_79379610_79379750	0.0413121	NHLH1,2.p2	AK165610|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK159869|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	BC095970|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK081288|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK139047|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	AK088107|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	NM_177994|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	BC132463|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene	BC138461|C030046I01Rik|109284|RIKEN cDNA C030046I01 gene
mm9_v1_chr5_-_131783136_131783155	0.0412324	NHLH1,2.p2	AK035817|Wbscr17|212996|Williams-Beuren syndrome chromosome region 17 homolog (human)
mm9_v1_chr10_+_122701051_122701245	0.0411633	NHLH1,2.p2	AK139403|Fam19a2|268354|family with sequence similarity 19, member A2	NM_182807|Fam19a2|268354|family with sequence similarity 19, member A2	AK140763|Fam19a2|268354|family with sequence similarity 19, member A2	BC027082|Fam19a2|268354|family with sequence similarity 19, member A2
mm9_v1_chr2_-_35972131_35972337	0.0409318	NHLH1,2.p2	AK220096|Rbm18|67889|RNA binding motif protein 18
mm9_v1_chr8_-_122159431_122159579	0.0407823	NHLH1,2.p2	BC043936|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4	NM_025734|Kcng4|66733|potassium voltage-gated channel, subfamily G, member 4
mm9_v1_chr17_-_56724005_56724033	0.0407587	NHLH1,2.p2	NM_001029979|Safb2|224902|scaffold attachment factor B2
mm9_v1_chr15_-_34608840_34608966	0.0406057	NHLH1,2.p2	AK079085|Nipal2|223473|NIPA-like domain containing 2	BC030399|Nipal2|223473|NIPA-like domain containing 2
mm9_v1_chr16_-_34262988_34262995	0.0405551	NHLH1,2.p2	AK164180|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr7_-_3629631_3629799	0.040526	NHLH1,2.p2	AK211361|Mboat7|77582|membrane bound O-acyltransferase domain containing 7
mm9_v1_chr2_-_22895580_22895680	0.0404286	NHLH1,2.p2	AY033645|Abi1|11308|abl-interactor 1	AK152061|Abi1|11308|abl-interactor 1	AK152184|Abi1|11308|abl-interactor 1	AK034476|Abi1|11308|abl-interactor 1	BC079642|Abi1|11308|abl-interactor 1	AK151026|Abi1|11308|abl-interactor 1	AK153130|Abi1|11308|abl-interactor 1	AK164040|Abi1|11308|abl-interactor 1
mm9_v1_chr2_-_166539288_166539340	0.0403549	NHLH1,2.p2	AK156208|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	AK173168|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	NM_177782|Prex1|277360|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1
mm9_v1_chr10_+_18246228_18246361	0.0402862	NHLH1,2.p2	AK220386|Nhsl1|215819|NHS-like 1	AK134837|Nhsl1|215819|NHS-like 1	AK043447|Nhsl1|215819|NHS-like 1
mm9_v1_chr10_+_127472725_127472748	0.0402064	NHLH1,2.p2	U22151|Naca|17938|nascent polypeptide-associated complex alpha polypeptide	BC099375|Naca|17938|nascent polypeptide-associated complex alpha polypeptide
mm9_v1_chr7_-_105326751_105326764	0.0401829	NHLH1,2.p2	AK155179|Capn5|12337|calpain 5
mm9_v1_chr7_+_53128141_53128380	0.0401315	NHLH1,2.p2	AK078785|Kdelr1|68137|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	AK013118|Kdelr1|68137|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	AJ278132|Kdelr1|68137|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	NM_133950|Kdelr1|68137|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	BC011370|Kdelr1|68137|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	AY027435|Kdelr1|68137|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm9_v1_chr7_+_127987068_127987113	0.0401051	NHLH1,2.p2	AK080915|Eef2k|13631|eukaryotic elongation factor-2 kinase
mm9_v1_chr8_+_26830853_26830927	0.0400425	NHLH1,2.p2	AK007542|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B	BC039626|Ppapdc1b|71910|phosphatidic acid phosphatase type 2 domain containing 1B
mm9_v1_chr8_-_11478623_11478709	0.0399767	NHLH1,2.p2	AK152454|Rab20|19332|RAB20, member RAS oncogene family	BC089570|Rab20|19332|RAB20, member RAS oncogene family	AK163743|Rab20|19332|RAB20, member RAS oncogene family	AK164541|Rab20|19332|RAB20, member RAS oncogene family	AK145566|Rab20|19332|RAB20, member RAS oncogene family	BC051569|Rab20|19332|RAB20, member RAS oncogene family
mm9_v1_chr18_+_37890662_37890807	0.039938	NHLH1,2.p2	BC057403|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AK156301|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	AY013807|Pcdhgb5|93702|protocadherin gamma subfamily B, 5	NM_033577|Pcdhgb5|93702|protocadherin gamma subfamily B, 5
mm9_v1_chr5_-_112772024_112772077	0.0399154	NHLH1,2.p2	AK012640|Srrd|70118|SRR1 domain containing	BC107023|Srrd|70118|SRR1 domain containing	BC125007|Srrd|70118|SRR1 domain containing	NM_027323|Srrd|70118|SRR1 domain containing
mm9_v1_chr3_+_60432922_60432975	0.0397883	NHLH1,2.p2	AK166145|Mbnl1|56758|muscleblind-like 1 (Drosophila)
mm9_v1_chr5_+_76569257_76569352	0.0397853	NHLH1,2.p2	AK075635|Srd5a3|57357|steroid 5 alpha-reductase 3	AK139290|Srd5a3|57357|steroid 5 alpha-reductase 3	BC145647|Srd5a3|57357|steroid 5 alpha-reductase 3	NM_020611|Srd5a3|57357|steroid 5 alpha-reductase 3	AK138681|Srd5a3|57357|steroid 5 alpha-reductase 3	BC014771|Srd5a3|57357|steroid 5 alpha-reductase 3	AK040198|Srd5a3|57357|steroid 5 alpha-reductase 3	AK162527|Srd5a3|57357|steroid 5 alpha-reductase 3	BC039564|Srd5a3|57357|steroid 5 alpha-reductase 3
mm9_v1_chr11_-_71949346_71949391	0.0397422	NHLH1,2.p2	AK147444|Pitpnm3|327958|PITPNM family member 3	NM_001024927|Pitpnm3|327958|PITPNM family member 3	NM_001081641|Pitpnm3|327958|PITPNM family member 3
mm9_v1_chr2_+_164312376_164312376	0.0397299	NHLH1,2.p2	AK003735|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2	NM_001048228|Dbndd2|52840|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm9_v1_chr11_-_21270436_21270515	0.0396597	NHLH1,2.p2	BC023810|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK033445|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AF424698|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK196595|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK197624|Ugp2|216558|UDP-glucose pyrophosphorylase 2	AK209798|Ugp2|216558|UDP-glucose pyrophosphorylase 2	BC061208|Ugp2|216558|UDP-glucose pyrophosphorylase 2
mm9_v1_chr15_+_52543936_52544030	0.0396301	NHLH1,2.p2	AK146250|Med30|69790|mediator complex subunit 30	AK011104|Med30|69790|mediator complex subunit 30	NM_027212|Med30|69790|mediator complex subunit 30	AK007739|Med30|69790|mediator complex subunit 30	BC020113|Med30|69790|mediator complex subunit 30
mm9_v1_chr19_+_3935169_3935313	0.039496	NHLH1,2.p2	NM_001161428|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	NM_019449|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	BC018388|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK030488|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK039526|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK165060|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK155556|Unc93b1|54445|unc-93 homolog B1 (C. elegans)	AK162535|Unc93b1|54445|unc-93 homolog B1 (C. elegans)
mm9_v1_chr19_-_4121444_4121482	0.0394473	NHLH1,2.p2	BC075614|Aip|11632|aryl-hydrocarbon receptor-interacting protein	AK011609|Aip|11632|aryl-hydrocarbon receptor-interacting protein
mm9_v1_chr2_-_104552275_104552329	0.0393877	NHLH1,2.p2	AK082024|Tcp11l1|320554|t-complex 11 like 1	NM_177190|Tcp11l1|320554|t-complex 11 like 1	AK047525|Tcp11l1|320554|t-complex 11 like 1
mm9_v1_chr5_-_133019090_133019157	0.0393357	NHLH1,2.p2	
mm9_v1_chr11_-_5661971_5662117	0.0393348	NHLH1,2.p2	AK191392|Urgcp|72046|upregulator of cell proliferation	AK129378|Urgcp|72046|upregulator of cell proliferation
mm9_v1_chr13_+_9093204_9093227	0.0393034	NHLH1,2.p2	BC078640|Larp4b|217980|La ribonucleoprotein domain family, member 4B
mm9_v1_chr9_-_119734573_119734593	0.0392127	NHLH1,2.p2	AF118044|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha	NM_011887|Scn11a|24046|sodium channel, voltage-gated, type XI, alpha
mm9_v1_chr10_-_80131318_80131466	0.0391881	NHLH1,2.p2	AK164278|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK207448|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	AK008277|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr5_-_136386463_136386544	0.0389772	NHLH1,2.p2	AK192597|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	AK208362|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chrX_-_41721513_41721518	0.0389563	NHLH1,2.p2	AK037333|Dcaf12l2|245403|DDB1 and CUL4 associated factor 12-like 2	NM_175539|Dcaf12l2|245403|DDB1 and CUL4 associated factor 12-like 2	AK076436|Dcaf12l2|245403|DDB1 and CUL4 associated factor 12-like 2
mm9_v1_chr2_+_124435841_124435850	0.0386324	NHLH1,2.p2	AK052232|Sema6d|214968|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm9_v1_chr9_-_106368268_106368278	0.0386014	NHLH1,2.p2	NM_001159652|Gpr62|436090|G protein-coupled receptor 62
mm9_v1_chr15_+_81066029_81066052	0.0383306	NHLH1,2.p2	AK134867|Mchr1|207911|melanin-concentrating hormone receptor 1
mm9_v1_chr17_-_37095181_37095245	0.0382016	NHLH1,2.p2	AF230339|Znrd1|66136|zinc ribbon domain containing, 1
mm9_v1_chr18_-_24178797_24178851	0.0380298	NHLH1,2.p2	BC011345|Zfp191|59057|zinc finger protein 191
mm9_v1_chr11_-_100573717_100573767	0.0377951	NHLH1,2.p2	AF254441|Kat2a|14534|K(lysine) acetyltransferase 2A	AK147042|Kat2a|14534|K(lysine) acetyltransferase 2A	AK150225|Kat2a|14534|K(lysine) acetyltransferase 2A	AK137358|Kat2a|14534|K(lysine) acetyltransferase 2A	AK155347|Kat2a|14534|K(lysine) acetyltransferase 2A	BC051952|Kat2a|14534|K(lysine) acetyltransferase 2A	BC060050|Kat2a|14534|K(lysine) acetyltransferase 2A	BC063752|Kat2a|14534|K(lysine) acetyltransferase 2A	AK145205|Kat2a|14534|K(lysine) acetyltransferase 2A	AK154866|Kat2a|14534|K(lysine) acetyltransferase 2A	AK158079|Kat2a|14534|K(lysine) acetyltransferase 2A
mm9_v1_chr5_+_138187390_138187596	0.0375115	NHLH1,2.p2	AK143608|Tsc22d4|78829|TSC22 domain family, member 4	AK079510|Tsc22d4|78829|TSC22 domain family, member 4	AF201286|Tsc22d4|78829|TSC22 domain family, member 4	AK201891|Tsc22d4|78829|TSC22 domain family, member 4	AK154490|Tsc22d4|78829|TSC22 domain family, member 4
mm9_v1_chr5_-_100812885_100812885	0.037501	NHLH1,2.p2	BC054358|Sec31a|69162|Sec31 homolog A (S. cerevisiae)
mm9_v1_chr11_-_6505567_6505609	0.0373959	NHLH1,2.p2	AB182283|Nacad|192950|NAC alpha domain containing	AK046108|Nacad|192950|NAC alpha domain containing
mm9_v1_chr6_+_50150160_50150179	0.0373794	NHLH1,2.p2	AK047380|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm9_v1_chr19_+_18706474_18706505	0.0371352	NHLH1,2.p2	AK050579|BC016495|225994|cDNA sequence BC016495	BC016495|BC016495|225994|cDNA sequence BC016495	NM_145497|BC016495|225994|cDNA sequence BC016495
mm9_v1_chr17_-_27327042_27327306	0.0369466	NHLH1,2.p2	AK217086|Lemd2|224640|LEM domain containing 2	AK212367|Lemd2|224640|LEM domain containing 2
mm9_v1_chr7_+_148587559_148587591	0.0368218	NHLH1,2.p2	AK193945|Taldo1|21351|transaldolase 1
mm9_v1_chr8_+_73895221_73895251	0.0368206	NHLH1,2.p2	AK155219|Ocel1|77090|occludin/ELL domain containing 1	AK143433|Ocel1|77090|occludin/ELL domain containing 1	BC019407|Ocel1|77090|occludin/ELL domain containing 1
mm9_v1_chr17_+_27154939_27155011	0.0367515	NHLH1,2.p2	AK002723|Ggnbp1|70772|gametogenetin binding protein 1
mm9_v1_chr5_-_117565990_117566025	0.0367321	NHLH1,2.p2	NM_001122666|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)	NM_178622|Suds3|71954|suppressor of defective silencing 3 homolog (S. cerevisiae)
mm9_v1_chrX_-_71638317_71638612	0.0366541	NHLH1,2.p2	BC011237|Fam3a|66294|family with sequence similarity 3, member A	AK007715|Fam3a|66294|family with sequence similarity 3, member A	NM_025473|Fam3a|66294|family with sequence similarity 3, member A	BC019752|Fam3a|66294|family with sequence similarity 3, member A	BC069871|Fam3a|66294|family with sequence similarity 3, member A
mm9_v1_chr10_-_20880559_20880789	0.0366307	NHLH1,2.p2	X02774|Myb|17863|myeloblastosis oncogene	AK132250|Myb|17863|myeloblastosis oncogene	AK137965|Myb|17863|myeloblastosis oncogene	BC011513|Myb|17863|myeloblastosis oncogene	AK088079|Myb|17863|myeloblastosis oncogene	AK088598|Myb|17863|myeloblastosis oncogene	M12848|Myb|17863|myeloblastosis oncogene	NM_001198914|Myb|17863|myeloblastosis oncogene	NM_010848|Myb|17863|myeloblastosis oncogene
mm9_v1_chr19_-_6982516_6982562	0.0366142	NHLH1,2.p2	AK209224|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr16_+_26581837_26581853	0.0365369	NHLH1,2.p2	AK039582|Il1rap|16180|interleukin 1 receptor accessory protein	AK136782|Il1rap|16180|interleukin 1 receptor accessory protein	AK033972|Il1rap|16180|interleukin 1 receptor accessory protein	AK045686|Il1rap|16180|interleukin 1 receptor accessory protein	AK149467|Il1rap|16180|interleukin 1 receptor accessory protein	BC021159|Il1rap|16180|interleukin 1 receptor accessory protein	X85999|Il1rap|16180|interleukin 1 receptor accessory protein
mm9_v1_chrX_-_132602648_132602774	0.0363887	NHLH1,2.p2	AF097439|Bex2|12069|brain expressed X-linked 2	BC027529|Bex2|12069|brain expressed X-linked 2	AK132005|Bex2|12069|brain expressed X-linked 2	NM_009749|Bex2|12069|brain expressed X-linked 2
mm9_v1_chr4_-_118081793_118081882	0.0363503	NHLH1,2.p2	GU433214|Szt2|230676|seizure threshold 2	FJ998170|Szt2|230676|seizure threshold 2	NM_198170|Szt2|230676|seizure threshold 2
mm9_v1_chr11_-_72609515_72609577	0.036248	NHLH1,2.p2	AK138991|Cyb5d2|192986|cytochrome b5 domain containing 2	AK034043|Cyb5d2|192986|cytochrome b5 domain containing 2	AK080730|Cyb5d2|192986|cytochrome b5 domain containing 2
mm9_v1_chr15_-_84388245_84388282	0.0359045	NHLH1,2.p2	BC094559|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like	NM_177630|Ldoc1l|223732|leucine zipper, down-regulated in cancer 1-like
mm9_v1_chr17_+_56812772_56812816	0.0357226	NHLH1,2.p2	AK155301|Ranbp3|71810|RAN binding protein 3	BC145892|Ranbp3|71810|RAN binding protein 3	BC145894|Ranbp3|71810|RAN binding protein 3	AK154201|Ranbp3|71810|RAN binding protein 3	AK167731|Ranbp3|71810|RAN binding protein 3	AK133949|Ranbp3|71810|RAN binding protein 3	AK040481|Ranbp3|71810|RAN binding protein 3	BC066005|Ranbp3|71810|RAN binding protein 3
mm9_v1_chr11_+_114751354_114751532	0.0356975	NHLH1,2.p2	AK045869|Cd300a|217303|CD300A antigen	NM_170758|Cd300a|217303|CD300A antigen	BC139296|Cd300a|217303|CD300A antigen	BC139297|Cd300a|217303|CD300A antigen	AB095675|Cd300a|217303|CD300A antigen
mm9_v1_chr8_-_23587282_23587355	0.0353238	NHLH1,2.p2	BC048089|AI316807|102032|expressed sequence AI316807	NM_001012667|AI316807|102032|expressed sequence AI316807	NM_001146117|AI316807|102032|expressed sequence AI316807	AK133712|AI316807|102032|expressed sequence AI316807
mm9_v1_chr7_-_90803834_90803886	0.0352809	NHLH1,2.p2	AK083338|Il16|16170|interleukin 16	BC026894|Il16|16170|interleukin 16	AK134007|Il16|16170|interleukin 16
mm9_v1_chr7_+_134985435_134985552	0.0352792	NHLH1,2.p2	BC005791|Stx4a|20909|syntaxin 4A (placental)	U76832|Stx4a|20909|syntaxin 4A (placental)
mm9_v1_chr5_+_110539283_110539354	0.0350627	NHLH1,2.p2	AK051473|Zfp605|675812|zinc finger protein 605
mm9_v1_chr18_-_77952671_77952705	0.0350606	NHLH1,2.p2	AK087799|8030462N17Rik|212163|RIKEN cDNA 8030462N17 gene
mm9_v1_chr19_-_59150558_59150589	0.0349797	NHLH1,2.p2	AK082304|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	NM_001114312|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	NM_175172|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene	AK220405|4930506M07Rik|71653|RIKEN cDNA 4930506M07 gene
mm9_v1_chr8_-_22995888_22995905	0.0349159	NHLH1,2.p2	BC109177|Defb9|246079|defensin beta 9	AJ437647|Defb9|246079|defensin beta 9	NM_139219|Defb9|246079|defensin beta 9
mm9_v1_chr7_+_31742368_31742427	0.0349077	NHLH1,2.p2	AK154275|Lsr|54135|lipolysis stimulated lipoprotein receptor
mm9_v1_chr6_-_51962458_51962567	0.0348892	NHLH1,2.p2	AF051324|Skap2|54353|src family associated phosphoprotein 2	AB014485|Skap2|54353|src family associated phosphoprotein 2	AK144289|Skap2|54353|src family associated phosphoprotein 2	AK076000|Skap2|54353|src family associated phosphoprotein 2	AK172297|Skap2|54353|src family associated phosphoprotein 2	BC003711|Skap2|54353|src family associated phosphoprotein 2	NM_018773|Skap2|54353|src family associated phosphoprotein 2
mm9_v1_chr13_+_44826700_44826834	0.0346861	NHLH1,2.p2	BC050129|Jarid2|16468|jumonji, AT rich interactive domain 2	AK044888|Jarid2|16468|jumonji, AT rich interactive domain 2	BC051010|Jarid2|16468|jumonji, AT rich interactive domain 2	BC026056|Jarid2|16468|jumonji, AT rich interactive domain 2	AK045214|Jarid2|16468|jumonji, AT rich interactive domain 2
mm9_v1_chr13_+_30428224_30428325	0.0346434	NHLH1,2.p2	NM_177322|Agtr1a|11607|angiotensin II receptor, type 1a	AK007990|Agtr1a|11607|angiotensin II receptor, type 1a	BC036175|Agtr1a|11607|angiotensin II receptor, type 1a
mm9_v1_chr3_-_107877497_107877529	0.0345731	NHLH1,2.p2	AK192664|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr13_-_108516475_108516490	0.0344632	NHLH1,2.p2	AK013620|Zswim6|67263|zinc finger, SWIM domain containing 6	AK019357|Zswim6|67263|zinc finger, SWIM domain containing 6
mm9_v1_chr18_+_12899855_12899944	0.034287	NHLH1,2.p2	AK132770|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AK016856|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AK075751|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359382|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359383|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359384|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	AF359385|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_001042418|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_001042419|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_001042420|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_027687|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	NM_181731|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	BC107272|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	BC107271|Cabyr|71132|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm9_v1_chr14_-_57397125_57397185	0.0342592	NHLH1,2.p2	BC026772|Pspc1|66645|paraspeckle protein 1	AK011272|Pspc1|66645|paraspeckle protein 1	AK017689|Pspc1|66645|paraspeckle protein 1	AK150823|Pspc1|66645|paraspeckle protein 1	AK160722|Pspc1|66645|paraspeckle protein 1	NM_025682|Pspc1|66645|paraspeckle protein 1
mm9_v1_chr11_-_74739244_74739299	0.0342495	NHLH1,2.p2	AB232340|Srr|27364|serine racemase	AB232342|Srr|27364|serine racemase	NM_001163311|Srr|27364|serine racemase	NM_013761|Srr|27364|serine racemase
mm9_v1_chr17_+_29839370_29839515	0.034228	NHLH1,2.p2	
mm9_v1_chr5_-_35448316_35448420	0.03421	NHLH1,2.p2	BC057979|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	BC032170|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	BC046641|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	D00622|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	BC094324|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	NM_013587|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK171471|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK089250|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK166616|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK168421|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AJ639614|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK169132|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK150451|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK152485|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK153323|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK166746|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK166819|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	S67967|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1	AK145710|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1
mm9_v1_chr5_+_74931439_74931607	0.0341176	NHLH1,2.p2	AK168464|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_001159573|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_001159574|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	NM_024183|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK049672|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK008561|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK005061|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	AK164105|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)	BC003263|Fip1l1|66899|FIP1 like 1 (S. cerevisiae)
mm9_v1_chr14_-_71059035_71059050	0.0338828	NHLH1,2.p2	BC048751|Npm2|328440|nucleophosmin/nucleoplasmin 2
mm9_v1_chr11_-_69734709_69734796	0.0337966	NHLH1,2.p2	AK178863|Eif5a|276770|eukaryotic translation initiation factor 5A	AK188886|Eif5a|276770|eukaryotic translation initiation factor 5A	BC008093|Eif5a|276770|eukaryotic translation initiation factor 5A	BC003889|Eif5a|276770|eukaryotic translation initiation factor 5A	BC024899|Eif5a|276770|eukaryotic translation initiation factor 5A	AK011470|Eif5a|276770|eukaryotic translation initiation factor 5A	NM_001166595|Eif5a|276770|eukaryotic translation initiation factor 5A	AK010183|Eif5a|276770|eukaryotic translation initiation factor 5A
mm9_v1_chr18_-_34811357_34811396	0.0337938	NHLH1,2.p2	BC059013|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK031459|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK038523|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK047789|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK048246|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK079681|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK044478|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK052567|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK075948|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	AK081461|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)	NM_178347|Cdc23|52563|CDC23 (cell division cycle 23, yeast, homolog)
mm9_v1_chr5_-_45841351_45841377	0.0337475	NHLH1,2.p2	AK161660|Qdpr|110391|quinoid dihydropteridine reductase
mm9_v1_chr3_+_14863507_14863565	0.03364	NHLH1,2.p2	AK003671|Car3|12350|carbonic anhydrase 3	AK075630|Car3|12350|carbonic anhydrase 3	AK002349|Car3|12350|carbonic anhydrase 3	AK017227|Car3|12350|carbonic anhydrase 3	BC011129|Car3|12350|carbonic anhydrase 3	NM_007606|Car3|12350|carbonic anhydrase 3
mm9_v1_chr11_-_115569734_115569779	0.0334389	NHLH1,2.p2	AK196759|Grb2|14784|growth factor receptor bound protein 2	BC085254|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr17_-_24769511_24769537	0.0333265	NHLH1,2.p2	AK147302|Tsc2|22084|tuberous sclerosis 2	AK148072|Tsc2|22084|tuberous sclerosis 2	AK147874|Tsc2|22084|tuberous sclerosis 2
mm9_v1_chr1_-_157264358_157264387	0.0333263	NHLH1,2.p2	HQ022853|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF131096|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF131098|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF131102|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	AF198104|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	HQ022845|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	HQ323679|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1	HQ323680|Xpr1|19775|xenotropic and polytropic retrovirus receptor 1
mm9_v1_chr7_+_26074512_26074540	0.0332682	NHLH1,2.p2	AK082152|Cic|71722|capicua homolog (Drosophila)
mm9_v1_chr6_+_79969636_79969636	0.0331989	NHLH1,2.p2	NM_178731|Lrrtm4|243499|leucine rich repeat transmembrane neuronal 4
mm9_v1_chr13_+_104711339_104711339	0.0331961	NHLH1,2.p2	AK083877|D130037M23Rik|328330|RIKEN cDNA D130037M23 gene
mm9_v1_chr17_-_34088397_34088432	0.0331866	NHLH1,2.p2	AK166333|B3galt4|54218|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	AF082504|B3galt4|54218|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	AK007600|B3galt4|54218|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	NM_019420|B3galt4|54218|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4
mm9_v1_chr11_-_97883716_97883773	0.0328072	NHLH1,2.p2	AF068898|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AY094172|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit	AY094173|Cacnb1|12295|calcium channel, voltage-dependent, beta 1 subunit
mm9_v1_chr2_-_127308234_127308234	0.0327947	NHLH1,2.p2	DQ148500|Kcnip3|56461|Kv channel interacting protein 3, calsenilin	NM_001111331|Kcnip3|56461|Kv channel interacting protein 3, calsenilin
mm9_v1_chr1_-_174149989_174150025	0.0326405	NHLH1,2.p2	NM_009813|Casq1|12372|calsequestrin 1
mm9_v1_chr17_-_24986912_24986947	0.0325189	NHLH1,2.p2	
mm9_v1_chr8_+_13785611_13785668	0.0324041	NHLH1,2.p2	AK020823|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC116988|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	BC119035|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	NM_025924|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK033239|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK011127|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK166277|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK016053|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)	AK145471|Upf3a|67031|UPF3 regulator of nonsense transcripts homolog A (yeast)
mm9_v1_chr4_+_86520317_86520392	0.0323001	NHLH1,2.p2	BC059819|Acer2|230379|alkaline ceramidase 2	NM_139306|Acer2|230379|alkaline ceramidase 2	AK085306|Acer2|230379|alkaline ceramidase 2	AF282864|Acer2|230379|alkaline ceramidase 2	AY312515|Acer2|230379|alkaline ceramidase 2
mm9_v1_chr14_+_61791811_61791874	0.0322813	NHLH1,2.p2	AK053626|Sacs|50720|sacsin	AK052467|Sacs|50720|sacsin
mm9_v1_chr4_+_135354137_135354188	0.0321754	NHLH1,2.p2	AK033394|Myom3|242702|myomesin family, member 3
mm9_v1_chr8_-_73034208_73034318	0.032131	NHLH1,2.p2	BC054413|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	BC014772|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	AK018726|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	BC086924|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	BC087922|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1	NM_019883|Uba52|22186|ubiquitin A-52 residue ribosomal protein fusion product 1
mm9_v1_chr4_+_130219255_130219279	0.0320925	NHLH1,2.p2	AK162742|Pum1|80912|pumilio 1 (Drosophila)	NM_001159603|Pum1|80912|pumilio 1 (Drosophila)	NM_001159604|Pum1|80912|pumilio 1 (Drosophila)	NM_001159605|Pum1|80912|pumilio 1 (Drosophila)	NM_001159606|Pum1|80912|pumilio 1 (Drosophila)	NM_030722|Pum1|80912|pumilio 1 (Drosophila)	AK141921|Pum1|80912|pumilio 1 (Drosophila)
mm9_v1_chr6_+_29476655_29476748	0.0320161	NHLH1,2.p2	AK150598|Irf5|27056|interferon regulatory factor 5	AK152042|Irf5|27056|interferon regulatory factor 5	AK171356|Irf5|27056|interferon regulatory factor 5	AK151019|Irf5|27056|interferon regulatory factor 5	AF028725|Irf5|27056|interferon regulatory factor 5	NM_012057|Irf5|27056|interferon regulatory factor 5
mm9_v1_chr5_-_140289167_140289196	0.0318299	NHLH1,2.p2	AK148454|Tmem184a|231832|transmembrane protein 184a	NM_144914|Tmem184a|231832|transmembrane protein 184a
mm9_v1_chr1_+_74818609_74818719	0.0317515	NHLH1,2.p2	M89800|Wnt6|22420|wingless-related MMTV integration site 6
mm9_v1_chr17_+_71596413_71596481	0.0315946	NHLH1,2.p2	AK021389|Lpin2|64898|lipin 2
mm9_v1_chr10_-_80260534_80260707	0.0315876	NHLH1,2.p2	AK219000|Plekhj1|78670|pleckstrin homology domain containing, family J member 1	AK178993|Plekhj1|78670|pleckstrin homology domain containing, family J member 1
mm9_v1_chr10_-_41738158_41738199	0.0314595	NHLH1,2.p2	AK011447|Armc2|213402|armadillo repeat containing 2	NM_001034858|Armc2|213402|armadillo repeat containing 2
mm9_v1_chr3_+_90345082_90345194	0.0313619	NHLH1,2.p2	BC020031|S100a16|67860|S100 calcium binding protein A16	NM_026416|S100a16|67860|S100 calcium binding protein A16
mm9_v1_chr6_+_70794501_70794578	0.0313028	NHLH1,2.p2	BC054809|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	NM_010121|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AF076681|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK010397|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3	AK046355|Eif2ak3|13666|eukaryotic translation initiation factor 2 alpha kinase 3
mm9_v1_chr15_+_25772997_25773018	0.0312525	NHLH1,2.p2	NM_001034851|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr9_-_15162159_15162231	0.0312482	NHLH1,2.p2	NM_176976|5830418K08Rik|319675|RIKEN cDNA 5830418K08 gene
mm9_v1_chr2_-_118199046_118199154	0.0312011	NHLH1,2.p2	BC052037|Gpr176|381413|G protein-coupled receptor 176	NM_201367|Gpr176|381413|G protein-coupled receptor 176
mm9_v1_chr6_+_55967502_55967523	0.03111	NHLH1,2.p2	BC026822|Gsbs|19051|G substrate	NM_011153|Gsbs|19051|G substrate	AF071562|Gsbs|19051|G substrate
mm9_v1_chr5_+_135644171_135644241	0.0309981	NHLH1,2.p2	NM_009745|Bcl7b|12054|B-cell CLL/lymphoma 7B
mm9_v1_chr9_+_109954534_109954609	0.0306965	NHLH1,2.p2	AK138416|Mtap4|17758|microtubule-associated protein 4	AK146790|Mtap4|17758|microtubule-associated protein 4	BC042645|Mtap4|17758|microtubule-associated protein 4	AK134996|Mtap4|17758|microtubule-associated protein 4
mm9_v1_chr10_-_116719183_116719359	0.0306368	NHLH1,2.p2	BC002069|Lyz2|17105|lysozyme 2	BC054463|Lyz2|17105|lysozyme 2	AK159640|Lyz2|17105|lysozyme 2	AK148516|Lyz2|17105|lysozyme 2	AK150998|Lyz2|17105|lysozyme 2	AK153244|Lyz2|17105|lysozyme 2	AK153475|Lyz2|17105|lysozyme 2	NM_017372|Lyz2|17105|lysozyme 2
mm9_v1_chr5_-_42099382_42099426	0.0306126	NHLH1,2.p2	AK159493|Rab28|100972|RAB28, member RAS oncogene family	BC004580|Rab28|100972|RAB28, member RAS oncogene family	NM_027295|Rab28|100972|RAB28, member RAS oncogene family	AK012286|Rab28|100972|RAB28, member RAS oncogene family
mm9_v1_chr10_+_62442963_62442971	0.0306087	NHLH1,2.p2	AK045485|Rufy2|70432|RUN and FYVE domain-containing 2	NM_027425|Rufy2|70432|RUN and FYVE domain-containing 2
mm9_v1_chr7_+_35905996_35906277	0.0305827	NHLH1,2.p2	BC106174|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha	AK160443|Cebpa|12606|CCAAT/enhancer binding protein (C/EBP), alpha
mm9_v1_chr2_+_148506922_148506934	0.0305062	NHLH1,2.p2	AK018470|Gzf1|74533|GDNF-inducible zinc finger protein 1	AB100266|Gzf1|74533|GDNF-inducible zinc finger protein 1	BC096015|Gzf1|74533|GDNF-inducible zinc finger protein 1
mm9_v1_chr4_+_155213834_155213912	0.0304332	NHLH1,2.p2	BC026438|Mxra8|74761|matrix-remodelling associated 8	AB040488|Mxra8|74761|matrix-remodelling associated 8	AK004732|Mxra8|74761|matrix-remodelling associated 8	AB052097|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr9_-_45636638_45636736	0.0303289	NHLH1,2.p2	AK158671|Cep164|214552|centrosomal protein 164	NM_001081373|Cep164|214552|centrosomal protein 164
mm9_v1_chr5_+_143178045_143178121	0.0303027	NHLH1,2.p2	NM_146257|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4	BC025599|Slc29a4|243328|solute carrier family 29 (nucleoside transporters), member 4
mm9_v1_chr1_+_174405490_174405627	0.0302109	NHLH1,2.p2	NM_029612|Slamf9|98365|SLAM family member 9	AK090041|Slamf9|98365|SLAM family member 9	AK009505|Slamf9|98365|SLAM family member 9	BC019477|Slamf9|98365|SLAM family member 9	AB196824|Slamf9|98365|SLAM family member 9	AB196825|Slamf9|98365|SLAM family member 9	AB196826|Slamf9|98365|SLAM family member 9	AB196827|Slamf9|98365|SLAM family member 9
mm9_v1_chr2_+_148221133_148221148	0.0297521	NHLH1,2.p2	BC138487|Sstr4|20608|somatostatin receptor 4	BC138488|Sstr4|20608|somatostatin receptor 4
mm9_v1_chr3_+_88357635_88357640	0.0296675	NHLH1,2.p2	AB040050|Ubqln4|94232|ubiquilin 4	NM_033526|Ubqln4|94232|ubiquilin 4
mm9_v1_chr13_-_56279929_56280053	0.0295161	NHLH1,2.p2	BC005528|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	AK153654|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	BC031130|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B	AK170349|Tifab|212937|TRAF-interacting protein with forkhead-associated domain, family member B
mm9_v1_chr4_-_154460375_154460500	0.0294797	NHLH1,2.p2	AK002550|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	NM_026395|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK168192|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK003682|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK013262|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)	AK078396|Rer1|67830|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm9_v1_chr2_+_152695336_152695453	0.029387	NHLH1,2.p2	AK167030|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)	AK011311|Tpx2|72119|TPX2, microtubule-associated protein homolog (Xenopus laevis)
mm9_v1_chr3_-_107957795_107957821	0.0291255	NHLH1,2.p2	AK032627|Gpr61|229714|G protein-coupled receptor 61	AK133702|Gpr61|229714|G protein-coupled receptor 61	NM_175470|Gpr61|229714|G protein-coupled receptor 61
mm9_v1_chr4_-_40226373_40226477	0.0290982	NHLH1,2.p2	BC147062|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	BC147063|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	AK146762|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	NM_001033305|Ndufb6|230075|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6
mm9_v1_chr14_-_55496374_55496374	0.0289538	NHLH1,2.p2	NM_001167908|Ppp1r3e|105651|protein phosphatase 1, regulatory (inhibitor) subunit 3E
mm9_v1_chr14_-_102008407_102008407	0.0289422	NHLH1,2.p2	AK039337|Tbc1d4|210789|TBC1 domain family, member 4	NM_001081278|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr12_+_104770650_104770779	0.0289192	NHLH1,2.p2	AK029499|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	NM_028980|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC111887|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4	BC113754|Ppp4r4|74521|protein phosphatase 4, regulatory subunit 4
mm9_v1_chr2_+_180317427_180317498	0.0287555	NHLH1,2.p2	AK052575|1600027N09Rik|73247|RIKEN cDNA 1600027N09 gene	BC085320|1600027N09Rik|73247|RIKEN cDNA 1600027N09 gene	AK038431|1600027N09Rik|73247|RIKEN cDNA 1600027N09 gene	AK005551|1600027N09Rik|73247|RIKEN cDNA 1600027N09 gene	BC042508|1600027N09Rik|73247|RIKEN cDNA 1600027N09 gene	BC110993|1600027N09Rik|73247|RIKEN cDNA 1600027N09 gene	BC054431|1600027N09Rik|73247|RIKEN cDNA 1600027N09 gene
mm9_v1_chr1_-_58449614_58449644	0.0287508	NHLH1,2.p2	
mm9_v1_chr3_+_95021378_95021403	0.0286982	NHLH1,2.p2	
mm9_v1_chr9_+_78023696_78023728	0.0286951	NHLH1,2.p2	AK050586|C920006O11Rik|320295|RIKEN cDNA C920006O11 gene	AK155758|C920006O11Rik|320295|RIKEN cDNA C920006O11 gene
mm9_v1_chr8_-_8690519_8690552	0.0285174	NHLH1,2.p2	BC046971|Arglu1|234023|arginine and glutamate rich 1	NM_176849|Arglu1|234023|arginine and glutamate rich 1
mm9_v1_chr8_+_73929908_73929953	0.0284073	NHLH1,2.p2	NM_172756|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK080768|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK087444|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK049395|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK078830|Ankle1|234396|ankyrin repeat and LEM domain containing 1	BC030436|Ankle1|234396|ankyrin repeat and LEM domain containing 1	AK083552|Ankle1|234396|ankyrin repeat and LEM domain containing 1	EU184014|Ankle1|234396|ankyrin repeat and LEM domain containing 1	BC094316|Ankle1|234396|ankyrin repeat and LEM domain containing 1
mm9_v1_chr10_+_29033305_29033440	0.0282515	NHLH1,2.p2	NM_025855|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK145162|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK016260|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK166660|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK166589|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK166634|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK028775|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	AK006444|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1	BC066183|Echdc1|52665|enoyl Coenzyme A hydratase domain containing 1
mm9_v1_chr2_-_151543541_151543662	0.0282108	NHLH1,2.p2	AK195843|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1	AK216758|Psmf1|228769|proteasome (prosome, macropain) inhibitor subunit 1
mm9_v1_chr4_-_109149038_109149266	0.0281998	NHLH1,2.p2	BC010299|Rnf11|29864|ring finger protein 11	NM_013876|Rnf11|29864|ring finger protein 11	AK014254|Rnf11|29864|ring finger protein 11
mm9_v1_chr6_+_113442698_113442948	0.0281158	NHLH1,2.p2	
mm9_v1_chr15_-_84818368_84818512	0.0279876	NHLH1,2.p2	AK149782|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	NM_001033273|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene	AK170532|5031439G07Rik|223739|RIKEN cDNA 5031439G07 gene
mm9_v1_chr11_-_70626060_70626062	0.0279647	NHLH1,2.p2	BC147177|A430084P05Rik|327957|RIKEN cDNA A430084P05 gene	BC147178|A430084P05Rik|327957|RIKEN cDNA A430084P05 gene	BC172005|A430084P05Rik|327957|RIKEN cDNA A430084P05 gene	AK138818|A430084P05Rik|327957|RIKEN cDNA A430084P05 gene	NM_001045526|A430084P05Rik|327957|RIKEN cDNA A430084P05 gene
mm9_v1_chr3_-_89049698_89049746	0.0279491	NHLH1,2.p2	AY251388|Trim46|360213|tripartite motif-containing 46
mm9_v1_chr17_+_74927634_74927745	0.0278592	NHLH1,2.p2	NM_007566|Birc6|12211|baculoviral IAP repeat-containing 6	Y17267|Birc6|12211|baculoviral IAP repeat-containing 6
mm9_v1_chr19_-_56896633_56896705	0.0276246	NHLH1,2.p2	BC064039|A630007B06Rik|213993|RIKEN cDNA A630007B06 gene	AK041398|A630007B06Rik|213993|RIKEN cDNA A630007B06 gene	AK054204|A630007B06Rik|213993|RIKEN cDNA A630007B06 gene
mm9_v1_chr2_+_28915770_28915796	0.0275778	NHLH1,2.p2	AK053589|Ttf1|22130|transcription termination factor, RNA polymerase I	AK163606|Ttf1|22130|transcription termination factor, RNA polymerase I	NM_009442|Ttf1|22130|transcription termination factor, RNA polymerase I	AK140081|Ttf1|22130|transcription termination factor, RNA polymerase I	X83974|Ttf1|22130|transcription termination factor, RNA polymerase I
mm9_v1_chr7_+_107154913_107155009	0.0275654	NHLH1,2.p2	NM_133709|Chrdl2|69121|chordin-like 2	BC019399|Chrdl2|69121|chordin-like 2	AF338222|Chrdl2|69121|chordin-like 2
mm9_v1_chr3_+_51297898_51297938	0.0275234	NHLH1,2.p2	
mm9_v1_chr11_+_70577932_70578003	0.0274059	NHLH1,2.p2	AK045753|Zfp3|193043|zinc finger protein 3	NM_177565|Zfp3|193043|zinc finger protein 3	BC096463|Zfp3|193043|zinc finger protein 3
mm9_v1_chr4_-_116855158_116855228	0.0273836	NHLH1,2.p2	AK150222|Kif2c|73804|kinesin family member 2C	AK088047|Kif2c|73804|kinesin family member 2C	BC006841|Kif2c|73804|kinesin family member 2C	AK015046|Kif2c|73804|kinesin family member 2C	NM_134471|Kif2c|73804|kinesin family member 2C
mm9_v1_chr5_-_110771973_110772012	0.027244	NHLH1,2.p2	AB094663|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	AB094664|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	AK158334|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2	AK141196|P2rx2|231602|purinergic receptor P2X, ligand-gated ion channel, 2
mm9_v1_chr3_-_95861723_95861742	0.0272338	NHLH1,2.p2	BC012691|Vps45|22365|vacuolar protein sorting 45 (yeast)
mm9_v1_chr2_+_164705533_164705558	0.0272223	NHLH1,2.p2	
mm9_v1_chr17_+_33766035_33766080	0.0271737	NHLH1,2.p2	NM_026712|Zfp414|328801|zinc finger protein 414	AK048362|Zfp414|328801|zinc finger protein 414	AK169869|Zfp414|328801|zinc finger protein 414	AK002706|Zfp414|328801|zinc finger protein 414	BC116933|Zfp414|328801|zinc finger protein 414	BC119044|Zfp414|328801|zinc finger protein 414	BC038913|Zfp414|328801|zinc finger protein 414
mm9_v1_chr3_-_33743185_33743231	0.0270546	NHLH1,2.p2	AK029948|Ccdc39|51938|coiled-coil domain containing 39	BC138917|Ccdc39|51938|coiled-coil domain containing 39	BC138920|Ccdc39|51938|coiled-coil domain containing 39	AK030087|Ccdc39|51938|coiled-coil domain containing 39	AK163953|Ccdc39|51938|coiled-coil domain containing 39	AK014839|Ccdc39|51938|coiled-coil domain containing 39	AK162849|Ccdc39|51938|coiled-coil domain containing 39	NM_026222|Ccdc39|51938|coiled-coil domain containing 39
mm9_v1_chr12_-_113205172_113205207	0.0270082	NHLH1,2.p2	BC059719|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	AK008333|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene	NM_027360|2010107E04Rik|70257|RIKEN cDNA 2010107E04 gene
mm9_v1_chr7_-_4959521_4959601	0.0269689	NHLH1,2.p2	AK182118|Fiz1|23877|Flt3 interacting zinc finger protein 1	AK177756|Fiz1|23877|Flt3 interacting zinc finger protein 1
mm9_v1_chr8_-_26127346_26127364	0.0268479	NHLH1,2.p2	AK155582|Adam9|11502|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm9_v1_chr2_-_17653057_17653112	0.0268327	NHLH1,2.p2	AK077332|Nebl|74103|nebulette
mm9_v1_chr17_+_27194207_27194289	0.0268257	NHLH1,2.p2	AK134443|Itpr3|16440|inositol 1,4,5-triphosphate receptor 3	NM_080553|Itpr3|16440|inositol 1,4,5-triphosphate receptor 3
mm9_v1_chr7_-_56136965_56137089	0.0267775	NHLH1,2.p2	AY957576|E2f8|108961|E2F transcription factor 8
mm9_v1_chr4_-_123341990_123342070	0.0267268	NHLH1,2.p2	AK143540|Macf1|11426|microtubule-actin crosslinking factor 1
mm9_v1_chr13_+_104968863_104968906	0.0266333	NHLH1,2.p2	AK039280|Trim23|81003|tripartite motif-containing 23
mm9_v1_chr1_-_128634766_128634787	0.0266203	NHLH1,2.p2	AK083792|Nckap5|210356|NCK-associated protein 5
mm9_v1_chr2_+_152139317_152139577	0.0265849	NHLH1,2.p2	AK192023|Tbc1d20|67231|TBC1 domain family, member 20	AK194089|Tbc1d20|67231|TBC1 domain family, member 20	AK199107|Tbc1d20|67231|TBC1 domain family, member 20	AK202139|Tbc1d20|67231|TBC1 domain family, member 20	AK212404|Tbc1d20|67231|TBC1 domain family, member 20	AK213499|Tbc1d20|67231|TBC1 domain family, member 20	AK219611|Tbc1d20|67231|TBC1 domain family, member 20
mm9_v1_chr7_-_91300359_91300442	0.0263968	NHLH1,2.p2	BC018511|Fam108c|70178|family with sequence similarity 108, member C	NM_133722|Fam108c|70178|family with sequence similarity 108, member C
mm9_v1_chr7_-_16872094_16872145	0.025812	NHLH1,2.p2	AK134892|Ccdc9|243846|coiled-coil domain containing 9	NM_001136471|Ccdc9|243846|coiled-coil domain containing 9
mm9_v1_chr2_-_121176719_121176752	0.0256683	NHLH1,2.p2	AK122264|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AK083140|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	NM_178795|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	BC065138|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1	AF502585|Ppip5k1|327655|diphosphoinositol pentakisphosphate kinase 1
mm9_v1_chr8_+_11448095_11448135	0.0256553	NHLH1,2.p2	AK075619|Col4a2|12827|collagen, type IV, alpha 2
mm9_v1_chr4_+_135502353_135502412	0.025543	NHLH1,2.p2	NM_008254|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK144768|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK145251|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK077842|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK132035|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	AK154033|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	S65036|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase	BC025440|Hmgcl|15356|3-hydroxy-3-methylglutaryl-Coenzyme A lyase
mm9_v1_chr6_-_54516326_54516404	0.0255172	NHLH1,2.p2	BC023889|Scrn1|69938|secernin 1	AK089968|Scrn1|69938|secernin 1	AK129084|Scrn1|69938|secernin 1	AK082953|Scrn1|69938|secernin 1	NM_027268|Scrn1|69938|secernin 1	AK145904|Scrn1|69938|secernin 1	AK050481|Scrn1|69938|secernin 1	AK012765|Scrn1|69938|secernin 1	AK032573|Scrn1|69938|secernin 1
mm9_v1_chr4_-_140330097_140330124	0.0255131	NHLH1,2.p2	AB013850|Padi4|18602|peptidyl arginine deiminase, type IV	AK137625|Padi4|18602|peptidyl arginine deiminase, type IV	NM_011061|Padi4|18602|peptidyl arginine deiminase, type IV
mm9_v1_chr7_+_142843598_142843624	0.0254328	NHLH1,2.p2	U36758|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK154910|Ptpre|19267|protein tyrosine phosphatase, receptor type, E	AK160947|Ptpre|19267|protein tyrosine phosphatase, receptor type, E
mm9_v1_chr13_+_54201964_54202052	0.0251637	NHLH1,2.p2	AK084725|Sfxn1|14057|sideroflexin 1	AK140048|Sfxn1|14057|sideroflexin 1
mm9_v1_chr19_+_48012171_48012212	0.0251246	NHLH1,2.p2	BC057135|Ccdc147|381229|coiled-coil domain containing 147	NM_001163267|Ccdc147|381229|coiled-coil domain containing 147	BC147530|Ccdc147|381229|coiled-coil domain containing 147	BC147540|Ccdc147|381229|coiled-coil domain containing 147	BC150978|Ccdc147|381229|coiled-coil domain containing 147	BC150979|Ccdc147|381229|coiled-coil domain containing 147
mm9_v1_chr1_+_53353995_53354002	0.0251012	NHLH1,2.p2	BC023903|Ormdl1|227102|ORM1-like 1 (S. cerevisiae)
mm9_v1_chr2_+_34629622_34629806	0.025057	NHLH1,2.p2	AK160592|Hspa5|14828|heat shock protein 5	AK213790|Hspa5|14828|heat shock protein 5
mm9_v1_chr7_+_134123446_134123464	0.0248864	NHLH1,2.p2	
mm9_v1_chr2_+_102498798_102498825	0.0247641	NHLH1,2.p2	U75372|Slc1a2|20511|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm9_v1_chr11_-_116555897_116555976	0.0246789	NHLH1,2.p2	BC010208|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	X93999|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	AK004613|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	NM_009180|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	AK136381|St6galnac2|20446|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
mm9_v1_chr19_-_6057706_6057798	0.0244587	NHLH1,2.p2	AK210880|Mrpl49|18120|mitochondrial ribosomal protein L49	BC028956|Mrpl49|18120|mitochondrial ribosomal protein L49	AK007712|Mrpl49|18120|mitochondrial ribosomal protein L49	AK014723|Mrpl49|18120|mitochondrial ribosomal protein L49	AK027949|Mrpl49|18120|mitochondrial ribosomal protein L49	AK049794|Mrpl49|18120|mitochondrial ribosomal protein L49	AK077397|Mrpl49|18120|mitochondrial ribosomal protein L49	NM_026246|Mrpl49|18120|mitochondrial ribosomal protein L49	AK003040|Mrpl49|18120|mitochondrial ribosomal protein L49	AK150572|Mrpl49|18120|mitochondrial ribosomal protein L49	AK150715|Mrpl49|18120|mitochondrial ribosomal protein L49	AK011273|Mrpl49|18120|mitochondrial ribosomal protein L49
mm9_v1_chr2_+_180716817_180716845	0.0242341	NHLH1,2.p2	
mm9_v1_chr5_+_23957994_23958094	0.0242017	NHLH1,2.p2	AF459091|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	NM_139153|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	AB078345|Agap3|213990|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
mm9_v1_chr7_+_4088622_4088685	0.0241905	NHLH1,2.p2	AK170629|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK034310|Leng8|232798|leukocyte receptor cluster (LRC) member 8	NM_172736|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK085304|Leng8|232798|leukocyte receptor cluster (LRC) member 8	AK158293|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC066768|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC042658|Leng8|232798|leukocyte receptor cluster (LRC) member 8	BC041775|Leng8|232798|leukocyte receptor cluster (LRC) member 8
mm9_v1_chr10_-_42893894_42894226	0.0241197	NHLH1,2.p2	DQ157775|Sobp|109205|sine oculis-binding protein homolog (Drosophila)	BC057055|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr5_+_111759771_111759826	0.0240981	NHLH1,2.p2	AK028235|Pitpnb|56305|phosphatidylinositol transfer protein, beta	NM_019640|Pitpnb|56305|phosphatidylinositol transfer protein, beta	U46934|Pitpnb|56305|phosphatidylinositol transfer protein, beta	BC034676|Pitpnb|56305|phosphatidylinositol transfer protein, beta
mm9_v1_chr5_+_114894288_114894354	0.0238639	NHLH1,2.p2	AK009261|Mvk|17855|mevalonate kinase	AK031084|Mvk|17855|mevalonate kinase	AK149630|Mvk|17855|mevalonate kinase	BC005606|Mvk|17855|mevalonate kinase	NM_023556|Mvk|17855|mevalonate kinase
mm9_v1_chr1_-_75250520_75250549	0.0238464	NHLH1,2.p2	BC064020|Ptprn|19275|protein tyrosine phosphatase, receptor type, N
mm9_v1_chr7_+_28043740_28043802	0.02377	NHLH1,2.p2	NM_010950|Numbl|18223|numb-like
mm9_v1_chr11_-_119903061_119903095	0.0237641	NHLH1,2.p2	AF011908|Aatk|11302|apoptosis-associated tyrosine kinase	AK155100|Aatk|11302|apoptosis-associated tyrosine kinase	NM_001198787|Aatk|11302|apoptosis-associated tyrosine kinase	AK036705|Aatk|11302|apoptosis-associated tyrosine kinase
mm9_v1_chr5_+_34974750_34974884	0.0236972	NHLH1,2.p2	
mm9_v1_chrX_-_71269083_71269215	0.0236846	NHLH1,2.p2	U56773|Irak1|16179|interleukin-1 receptor-associated kinase 1	AB088370|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK045958|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK052933|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK144879|Irak1|16179|interleukin-1 receptor-associated kinase 1	AK143694|Irak1|16179|interleukin-1 receptor-associated kinase 1
mm9_v1_chr6_+_116214215_116214252	0.0234029	NHLH1,2.p2	AK089032|Anubl1|67492|AN1, ubiquitin-like, homolog (Xenopus laevis)	NM_001081317|Anubl1|67492|AN1, ubiquitin-like, homolog (Xenopus laevis)
mm9_v1_chr7_-_53176582_53176892	0.0233734	NHLH1,2.p2	BC001999|Emp3|13732|epithelial membrane protein 3	AF011750|Emp3|13732|epithelial membrane protein 3	U87948|Emp3|13732|epithelial membrane protein 3	NM_010129|Emp3|13732|epithelial membrane protein 3
mm9_v1_chr7_-_126127713_126127734	0.0232983	NHLH1,2.p2	AB030197|Gprc5b|64297|G protein-coupled receptor, family C, group 5, member B
mm9_v1_chr3_-_97672147_97672234	0.0232007	NHLH1,2.p2	AK141917|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)	NM_177145|Pde4dip|83679|phosphodiesterase 4D interacting protein (myomegalin)
mm9_v1_chr17_+_44914271_44914344	0.0231515	NHLH1,2.p2	AK050321|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	AK087935|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	AK089837|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)	BC096051|Supt3h|109115|suppressor of Ty 3 homolog (S. cerevisiae)
mm9_v1_chr9_+_51856305_51856361	0.0231042	NHLH1,2.p2	AK088292|Rdx|19684|radixin	AK156370|Rdx|19684|radixin
mm9_v1_chr4_-_150482562_150482580	0.0229132	NHLH1,2.p2	AK168378|Camta1|100072|calmodulin binding transcription activator 1
mm9_v1_chr19_+_3388856_3388916	0.022641	NHLH1,2.p2	AK161511|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AB057423|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	NM_001039657|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	NM_001039658|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	BC024377|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AK015732|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AK053809|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AK015724|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)
mm9_v1_chr11_-_74982551_74982653	0.0225536	NHLH1,2.p2	AF036334|Hic1|15248|hypermethylated in cancer 1
mm9_v1_chr5_-_20457608_20457646	0.02251	NHLH1,2.p2	NM_001080977|Rsbn1l|242860|round spermatid basic protein 1-like
mm9_v1_chr19_+_25311691_25311752	0.0224634	NHLH1,2.p2	AK041011|Kank1|107351|KN motif and ankyrin repeat domains 1	NM_181404|Kank1|107351|KN motif and ankyrin repeat domains 1
mm9_v1_chr4_+_32744074_32744093	0.0223941	NHLH1,2.p2	AK144722|Mdn1|100019|midasin homolog (yeast)	NM_001081392|Mdn1|100019|midasin homolog (yeast)
mm9_v1_chr8_-_73905523_73905557	0.0223393	NHLH1,2.p2	AK146779|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6	BC008138|Nr2f6|13864|nuclear receptor subfamily 2, group F, member 6
mm9_v1_chr5_-_121641282_121641449	0.0222834	NHLH1,2.p2	D84372|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC057398|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC028513|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK011468|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK147354|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	BC059278|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159501|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	AK159587|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_001109992|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11	NM_011202|Ptpn11|19247|protein tyrosine phosphatase, non-receptor type 11
mm9_v1_chr5_+_106128934_106129078	0.0222558	NHLH1,2.p2	AK137459|Lrrc8d|231549|leucine rich repeat containing 8D	NM_001122768|Lrrc8d|231549|leucine rich repeat containing 8D	AK046249|Lrrc8d|231549|leucine rich repeat containing 8D	AK080722|Lrrc8d|231549|leucine rich repeat containing 8D
mm9_v1_chr11_+_75323840_75323968	0.0222312	NHLH1,2.p2	AK160517|Rilp|280408|Rab interacting lysosomal protein
mm9_v1_chr4_+_43394824_43394863	0.0221918	NHLH1,2.p2	NM_001037709|Rusc2|100213|RUN and SH3 domain containing 2
mm9_v1_chr13_-_58009650_58009651	0.0219152	NHLH1,2.p2	AK051191|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr2_-_166821559_166821808	0.0217876	NHLH1,2.p2	AK151835|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK152744|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK152269|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK041781|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK159602|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	BC082277|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK167637|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK005002|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK030788|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK030890|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK160979|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK139532|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	BC012959|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK145826|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AK159781|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	NM_001109905|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	NM_001109906|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	NM_011490|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)	AF061942|Stau1|20853|staufen (RNA binding protein) homolog 1 (Drosophila)
mm9_v1_chr17_-_74059735_74059792	0.0216396	NHLH1,2.p2	AK049598|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	AK002747|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	NM_027864|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	AK090146|Galnt14|71685|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14
mm9_v1_chr7_+_135381536_135381632	0.0215401	NHLH1,2.p2	BC032200|Armc5|233912|armadillo repeat containing 5	BC089363|Armc5|233912|armadillo repeat containing 5
mm9_v1_chr7_+_134355216_134355237	0.0214399	NHLH1,2.p2	AK003149|Mylpf|17907|myosin light chain, phosphorylatable, fast skeletal muscle	BC055869|Mylpf|17907|myosin light chain, phosphorylatable, fast skeletal muscle
mm9_v1_chr15_-_98701613_98701613	0.0214398	NHLH1,2.p2	NM_001033276|Mll2|381022|myeloid/lymphoid or mixed-lineage leukemia 2
mm9_v1_chrX_+_159198302_159198437	0.0213952	NHLH1,2.p2	NM_009031|Rbbp7|245688|retinoblastoma binding protein 7	AK146439|Rbbp7|245688|retinoblastoma binding protein 7	AK147062|Rbbp7|245688|retinoblastoma binding protein 7	AK153913|Rbbp7|245688|retinoblastoma binding protein 7	AK148852|Rbbp7|245688|retinoblastoma binding protein 7	U35142|Rbbp7|245688|retinoblastoma binding protein 7	BC003785|Rbbp7|245688|retinoblastoma binding protein 7	AK076016|Rbbp7|245688|retinoblastoma binding protein 7	AK135779|Rbbp7|245688|retinoblastoma binding protein 7	AK135956|Rbbp7|245688|retinoblastoma binding protein 7	AK078349|Rbbp7|245688|retinoblastoma binding protein 7	AK082892|Rbbp7|245688|retinoblastoma binding protein 7	AK136110|Rbbp7|245688|retinoblastoma binding protein 7	AK145531|Rbbp7|245688|retinoblastoma binding protein 7	AK146014|Rbbp7|245688|retinoblastoma binding protein 7	AK146904|Rbbp7|245688|retinoblastoma binding protein 7	AK146967|Rbbp7|245688|retinoblastoma binding protein 7	AK160023|Rbbp7|245688|retinoblastoma binding protein 7	AK132101|Rbbp7|245688|retinoblastoma binding protein 7	AK145651|Rbbp7|245688|retinoblastoma binding protein 7
mm9_v1_chr16_-_18407565_18407802	0.0213436	NHLH1,2.p2	AK084547|Comt|12846|catechol-O-methyltransferase	AK133500|Comt|12846|catechol-O-methyltransferase
mm9_v1_chr3_-_146162716_146162716	0.0213396	NHLH1,2.p2	NM_027617|Spata1|70951|spermatogenesis associated 1
mm9_v1_chr10_+_76495961_76496025	0.0213074	NHLH1,2.p2	AK088803|Slc19a1|20509|solute carrier family 19 (sodium/hydrogen exchanger), member 1	AK079592|Slc19a1|20509|solute carrier family 19 (sodium/hydrogen exchanger), member 1	NM_031196|Slc19a1|20509|solute carrier family 19 (sodium/hydrogen exchanger), member 1	U66103|Slc19a1|20509|solute carrier family 19 (sodium/hydrogen exchanger), member 1	AK085024|Slc19a1|20509|solute carrier family 19 (sodium/hydrogen exchanger), member 1	U32469|Slc19a1|20509|solute carrier family 19 (sodium/hydrogen exchanger), member 1	AK050714|Slc19a1|20509|solute carrier family 19 (sodium/hydrogen exchanger), member 1
mm9_v1_chr9_-_77956833_77956859	0.0211762	NHLH1,2.p2	AK077607|Fbxo9|71538|f-box protein 9	NM_001081490|Fbxo9|71538|f-box protein 9
mm9_v1_chr17_+_27822162_27822200	0.0211293	NHLH1,2.p2	AK043967|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1	NM_178365|Pacsin1|23969|protein kinase C and casein kinase substrate in neurons 1
mm9_v1_chr10_-_42722514_42722517	0.0210535	NHLH1,2.p2	AK019306|Sobp|109205|sine oculis-binding protein homolog (Drosophila)
mm9_v1_chr3_+_116265890_116265995	0.0210533	NHLH1,2.p2	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr7_+_134944106_134944154	0.0209228	NHLH1,2.p2	NM_001040684|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	NM_133943|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	AK077476|Hsd3b7|101502|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm9_v1_chr1_+_74818463_74818531	0.0208648	NHLH1,2.p2	AK133954|Wnt6|22420|wingless-related MMTV integration site 6	NM_009526|Wnt6|22420|wingless-related MMTV integration site 6	BC048700|Wnt6|22420|wingless-related MMTV integration site 6
mm9_v1_chr18_+_58819093_58819192	0.0207881	NHLH1,2.p2	AK165542|Isoc1|66307|isochorismatase domain containing 1	BC016576|Isoc1|66307|isochorismatase domain containing 1	AY035213|Isoc1|66307|isochorismatase domain containing 1	NM_025478|Isoc1|66307|isochorismatase domain containing 1	AK134794|Isoc1|66307|isochorismatase domain containing 1	AK152763|Isoc1|66307|isochorismatase domain containing 1	AK153257|Isoc1|66307|isochorismatase domain containing 1
mm9_v1_chr11_+_20101404_20101502	0.0207425	NHLH1,2.p2	AK166249|Rab1|19324|RAB1, member RAS oncogene family	AK152978|Rab1|19324|RAB1, member RAS oncogene family	AK167150|Rab1|19324|RAB1, member RAS oncogene family	AK034408|Rab1|19324|RAB1, member RAS oncogene family	AK050526|Rab1|19324|RAB1, member RAS oncogene family	AK151085|Rab1|19324|RAB1, member RAS oncogene family	AK159425|Rab1|19324|RAB1, member RAS oncogene family	AK129477|Rab1|19324|RAB1, member RAS oncogene family	BC002077|Rab1|19324|RAB1, member RAS oncogene family	Y00094|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr12_+_72075602_72075612	0.0206341	NHLH1,2.p2	NM_011184|Psma3|19167|proteasome (prosome, macropain) subunit, alpha type 3
mm9_v1_chr2_+_163820920_163821078	0.0206072	NHLH1,2.p2	AK150414|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK151294|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK004872|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK011389|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	NM_018753|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AF058797|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK083367|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK158932|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK204033|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC132121|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	BC138512|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr19_+_41557475_41557518	0.0205384	NHLH1,2.p2	AK041621|Lcor|212391|ligand dependent nuclear receptor corepressor
mm9_v1_chrX_+_34335651_34335798	0.020454	NHLH1,2.p2	BC004570|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	BC086756|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	U10404|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK188826|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	AK195999|Slc25a5|11740|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm9_v1_chr5_-_135539929_135539990	0.0204011	NHLH1,2.p2	BC093484|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AF412035|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK003386|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK011005|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	AK151986|Wbscr22|66138|Williams Beuren syndrome chromosome region 22	NM_025375|Wbscr22|66138|Williams Beuren syndrome chromosome region 22
mm9_v1_chr8_+_116167112_116167131	0.0203627	NHLH1,2.p2	AY899935|Syce1l|668110|synaptonemal complex central element protein 1 like	AY899936|Syce1l|668110|synaptonemal complex central element protein 1 like	BC141326|Syce1l|668110|synaptonemal complex central element protein 1 like	BC141347|Syce1l|668110|synaptonemal complex central element protein 1 like	NM_001048145|Syce1l|668110|synaptonemal complex central element protein 1 like	NM_029139|Syce1l|668110|synaptonemal complex central element protein 1 like	AK015606|Syce1l|668110|synaptonemal complex central element protein 1 like	BC100478|Syce1l|668110|synaptonemal complex central element protein 1 like
mm9_v1_chr11_-_115476794_115476844	0.0202324	NHLH1,2.p2	
mm9_v1_chr17_+_57129686_57129814	0.0202163	NHLH1,2.p2	NM_017393|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK145765|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	BC001998|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AJ005253|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK004024|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK168053|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK002238|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)	AK147719|Clpp|53895|caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)
mm9_v1_chr1_+_92811676_92811782	0.0202107	NHLH1,2.p2	NM_053015|Mlph|171531|melanophilin	AF384098|Mlph|171531|melanophilin	BC006900|Mlph|171531|melanophilin	AK008973|Mlph|171531|melanophilin	AK019883|Mlph|171531|melanophilin	AK148274|Mlph|171531|melanophilin	BC150804|Mlph|171531|melanophilin
mm9_v1_chr8_+_34763709_34763709	0.020187	NHLH1,2.p2	BC056357|Gsr|14782|glutathione reductase	BC057325|Gsr|14782|glutathione reductase	NM_010344|Gsr|14782|glutathione reductase
mm9_v1_chr19_+_44368165_44368165	0.0201841	NHLH1,2.p2	AK147406|Scd2|20250|stearoyl-Coenzyme A desaturase 2	NM_009128|Scd2|20250|stearoyl-Coenzyme A desaturase 2
mm9_v1_chr2_+_71711274_71711402	0.0201435	NHLH1,2.p2	AK046805|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK153649|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	NM_172665|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK163553|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC027196|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK028017|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	AK085215|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1	BC025480|Pdk1|228026|pyruvate dehydrogenase kinase, isoenzyme 1
mm9_v1_chr14_+_37881214_37881259	0.0201406	NHLH1,2.p2	BC037728|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044611|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044383|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	NM_173418|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	BC057628|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
mm9_v1_chr16_-_38341927_38341945	0.0200817	NHLH1,2.p2	AK077038|4932425I24Rik|320214|RIKEN cDNA 4932425I24 gene	NM_001081025|4932425I24Rik|320214|RIKEN cDNA 4932425I24 gene
mm9_v1_chr4_-_133684599_133684716	0.0199251	NHLH1,2.p2	AK003431|Sh3bgrl3|73723|SH3 domain binding glutamic acid-rich protein-like 3	BC008110|Sh3bgrl3|73723|SH3 domain binding glutamic acid-rich protein-like 3	NM_080559|Sh3bgrl3|73723|SH3 domain binding glutamic acid-rich protein-like 3
mm9_v1_chr2_+_163842411_163842512	0.0198883	NHLH1,2.p2	AK199528|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr5_+_122822505_122822541	0.01977	NHLH1,2.p2	BC003341|Gpn3|68080|GPN-loop GTPase 3	NM_024216|Gpn3|68080|GPN-loop GTPase 3
mm9_v1_chr12_+_112088488_112088532	0.0197192	NHLH1,2.p2	BC150732|Zfp839|72805|zinc finger protein 839	NM_028365|Zfp839|72805|zinc finger protein 839	AK013356|Zfp839|72805|zinc finger protein 839
mm9_v1_chr5_-_35441823_35441913	0.0197061	NHLH1,2.p2	AK206813|Lrpap1|16976|low density lipoprotein receptor-related protein associated protein 1
mm9_v1_chr7_-_4465970_4466046	0.0196601	NHLH1,2.p2	AJ131711|Tnnt1|21955|troponin T1, skeletal, slow
mm9_v1_chr3_+_28680248_28680315	0.0196403	NHLH1,2.p2	AK052412|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106843|Eif5a2|208691|eukaryotic translation initiation factor 5A2	BC106844|Eif5a2|208691|eukaryotic translation initiation factor 5A2	AK082214|Eif5a2|208691|eukaryotic translation initiation factor 5A2
mm9_v1_chr17_+_34290108_34290343	0.0195984	NHLH1,2.p2	AK032745|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	NM_010387|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	AK169969|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	AK170866|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	BC002237|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	BC003718|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35329|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35330|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35331|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	U35333|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90964|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90965|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90966|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90967|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90968|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90969|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90970|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90971|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90972|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90973|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90974|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1	X90975|H2-DMb1|14999|histocompatibility 2, class II, locus Mb1
mm9_v1_chr5_+_87233514_87233581	0.0195233	NHLH1,2.p2	NM_177680|Ythdc1|231386|YTH domain containing 1
mm9_v1_chr1_-_186669499_186669729	0.0194137	NHLH1,2.p2	AK178160|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK180823|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	BC006888|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	BC042686|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK002874|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK051230|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK078650|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	NM_133684|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2	AK017150|Mosc2|67247|MOCO sulphurase C-terminal domain containing 2
mm9_v1_chr5_+_77403725_77403746	0.0190611	NHLH1,2.p2	AK133784|Srp72|66661|signal recognition particle 72	NM_025691|Srp72|66661|signal recognition particle 72	BC003434|Srp72|66661|signal recognition particle 72	AK138875|Srp72|66661|signal recognition particle 72	BC019196|Srp72|66661|signal recognition particle 72
mm9_v1_chr2_+_174241304_174241382	0.0190027	NHLH1,2.p2	AJ238742|Th1l|57314|TH1-like homolog (Drosophila)	NM_020580|Th1l|57314|TH1-like homolog (Drosophila)	AK049418|Th1l|57314|TH1-like homolog (Drosophila)	BC006959|Th1l|57314|TH1-like homolog (Drosophila)	BC031747|Th1l|57314|TH1-like homolog (Drosophila)	AJ238743|Th1l|57314|TH1-like homolog (Drosophila)	AK159866|Th1l|57314|TH1-like homolog (Drosophila)	AK010360|Th1l|57314|TH1-like homolog (Drosophila)	AJ238741|Th1l|57314|TH1-like homolog (Drosophila)
mm9_v1_chr7_-_38804503_38804582	0.0189845	NHLH1,2.p2	AK160558|C80913|19777|expressed sequence C80913	AK155994|C80913|19777|expressed sequence C80913	AK166566|C80913|19777|expressed sequence C80913	AK170929|C80913|19777|expressed sequence C80913	NM_011274|C80913|19777|expressed sequence C80913
mm9_v1_chr5_+_29895742_29895846	0.0189074	NHLH1,2.p2	AK046056|Ube3c|100763|ubiquitin protein ligase E3C	NM_133907|Ube3c|100763|ubiquitin protein ligase E3C	AK122187|Ube3c|100763|ubiquitin protein ligase E3C
mm9_v1_chr4_+_141000576_141000628	0.018725	NHLH1,2.p2	NM_009541|Zbtb17|22642|zinc finger and BTB domain containing 17	U14556|Zbtb17|22642|zinc finger and BTB domain containing 17	AK051971|Zbtb17|22642|zinc finger and BTB domain containing 17	U22396|Zbtb17|22642|zinc finger and BTB domain containing 17	BC060055|Zbtb17|22642|zinc finger and BTB domain containing 17	AK134251|Zbtb17|22642|zinc finger and BTB domain containing 17
mm9_v1_chr5_+_112772106_112772123	0.0186731	NHLH1,2.p2	AK081489|Hps4|192232|Hermansky-Pudlak syndrome 4 homolog (human)	NM_138646|Hps4|192232|Hermansky-Pudlak syndrome 4 homolog (human)
mm9_v1_chr8_+_123640069_123640092	0.0184912	NHLH1,2.p2	AK076319|Foxc2|14234|forkhead box C2	AK146887|Foxc2|14234|forkhead box C2	NM_013519|Foxc2|14234|forkhead box C2	X74040|Foxc2|14234|forkhead box C2
mm9_v1_chr2_+_121134843_121134847	0.0184882	NHLH1,2.p2	AK018185|Mtap1a|17754|microtubule-associated protein 1 A
mm9_v1_chr4_+_150239183_150239284	0.0183422	NHLH1,2.p2	AK205245|Errfi1|74155|ERBB receptor feedback inhibitor 1
mm9_v1_chr15_+_78859279_78859331	0.0182143	NHLH1,2.p2	
mm9_v1_chr7_-_31729018_31729052	0.0181197	NHLH1,2.p2	BC021587|Hamp|84506|hepcidin antimicrobial peptide	AF297664|Hamp|84506|hepcidin antimicrobial peptide	AF503444|Hamp|84506|hepcidin antimicrobial peptide	NM_032541|Hamp|84506|hepcidin antimicrobial peptide
mm9_v1_chr10_+_80165400_80165511	0.0181174	NHLH1,2.p2	NM_027829|Izumo4|71564|IZUMO family member 4	BC057953|Izumo4|71564|IZUMO family member 4
mm9_v1_chr6_+_91162756_91162777	0.0180801	NHLH1,2.p2	NM_001081437|Fbln2|14115|fibulin 2	NM_007992|Fbln2|14115|fibulin 2	BC005443|Fbln2|14115|fibulin 2
mm9_v1_chr9_-_45762863_45762870	0.0180715	NHLH1,2.p2	AK196459|Sidt2|214597|SID1 transmembrane family, member 2
mm9_v1_chr6_-_72340660_72340698	0.0180112	NHLH1,2.p2	NM_016794|Vamp8|22320|vesicle-associated membrane protein 8
mm9_v1_chr6_-_54922563_54922606	0.0179869	NHLH1,2.p2	NM_172729|Nod1|107607|nucleotide-binding oligomerization domain containing 1	AK137585|Nod1|107607|nucleotide-binding oligomerization domain containing 1
mm9_v1_chr15_-_72891441_72891633	0.0179541	NHLH1,2.p2	AK156739|Trappc9|76510|trafficking protein particle complex 9	AK013485|Trappc9|76510|trafficking protein particle complex 9	AK028504|Trappc9|76510|trafficking protein particle complex 9	AK029106|Trappc9|76510|trafficking protein particle complex 9	AK031788|Trappc9|76510|trafficking protein particle complex 9	AK138682|Trappc9|76510|trafficking protein particle complex 9	BC070463|Trappc9|76510|trafficking protein particle complex 9	NM_001164641|Trappc9|76510|trafficking protein particle complex 9	NM_001164642|Trappc9|76510|trafficking protein particle complex 9	NM_001164643|Trappc9|76510|trafficking protein particle complex 9	NM_180662|Trappc9|76510|trafficking protein particle complex 9
mm9_v1_chr11_+_69727523_69727631	0.0178679	NHLH1,2.p2	AF153696|Gps2|56310|G protein pathway suppressor 2
mm9_v1_chr10_-_92773579_92773713	0.0178613	NHLH1,2.p2	AK052546|Elk3|13713|ELK3, member of ETS oncogene family	S82864|Elk3|13713|ELK3, member of ETS oncogene family	AK133847|Elk3|13713|ELK3, member of ETS oncogene family	BC053402|Elk3|13713|ELK3, member of ETS oncogene family	BC055735|Elk3|13713|ELK3, member of ETS oncogene family	AK088129|Elk3|13713|ELK3, member of ETS oncogene family
mm9_v1_chr10_-_80134720_80134753	0.0177136	NHLH1,2.p2	BC010256|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	NM_021462|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2	Y11092|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr15_-_54109855_54110038	0.0174954	NHLH1,2.p2	BC049782|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AK140244|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	U94331|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AK146105|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	AB013898|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	NM_008764|Tnfrsf11b|18383|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm9_v1_chr15_+_76175034_76175081	0.0172744	NHLH1,2.p2	AK186904|Cyc1|66445|cytochrome c-1
mm9_v1_chr2_+_155212676_155212898	0.0172612	NHLH1,2.p2	AK186401|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK195529|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK196103|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2	AK212608|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr11_+_60526123_60526177	0.0172525	NHLH1,2.p2	BC029987|Llgl1|16897|lethal giant larvae homolog 1 (Drosophila)
mm9_v1_chr11_-_76212487_76212500	0.0172187	NHLH1,2.p2	AB095441|Nxn|18230|nucleoredoxin	AB095442|Nxn|18230|nucleoredoxin	AB095443|Nxn|18230|nucleoredoxin	AB095444|Nxn|18230|nucleoredoxin
mm9_v1_chr1_-_134287712_134287857	0.0172111	NHLH1,2.p2	AK172957|Tmcc2|68875|transmembrane and coiled-coil domains 2	BC052035|Tmcc2|68875|transmembrane and coiled-coil domains 2	NM_178874|Tmcc2|68875|transmembrane and coiled-coil domains 2
mm9_v1_chr8_-_124956759_124956863	0.0167845	NHLH1,2.p2	M31775|Cyba|13057|cytochrome b-245, alpha polypeptide	EU791539|Cyba|13057|cytochrome b-245, alpha polypeptide	BC026791|Cyba|13057|cytochrome b-245, alpha polypeptide	AK018713|Cyba|13057|cytochrome b-245, alpha polypeptide	AK131580|Cyba|13057|cytochrome b-245, alpha polypeptide	AK171748|Cyba|13057|cytochrome b-245, alpha polypeptide	AK078854|Cyba|13057|cytochrome b-245, alpha polypeptide	AK021200|Cyba|13057|cytochrome b-245, alpha polypeptide	AK152414|Cyba|13057|cytochrome b-245, alpha polypeptide	NM_007806|Cyba|13057|cytochrome b-245, alpha polypeptide
mm9_v1_chr11_-_102152310_102152512	0.016722	NHLH1,2.p2	AK218190|Atxn7l3|217218|ataxin 7-like 3	AK053165|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr11_-_17847399_17847495	0.0167086	NHLH1,2.p2	AK018594|Etaa1|68145|Ewing's tumor-associated antigen 1
mm9_v1_chr5_-_135154072_135154119	0.0166592	NHLH1,2.p2	AK172083|Limk1|16885|LIM-domain containing, protein kinase	AK170166|Limk1|16885|LIM-domain containing, protein kinase
mm9_v1_chr1_-_66991580_66991617	0.0166467	NHLH1,2.p2	AK003182|Myl1|17901|myosin, light polypeptide 1
mm9_v1_chr7_-_97278443_97278523	0.0165784	NHLH1,2.p2	AK019082|2310010J17Rik|78329|RIKEN cDNA 2310010J17 gene
mm9_v1_chr9_+_120401723_120401758	0.016575	NHLH1,2.p2	NM_026892|Eif1b|68969|eukaryotic translation initiation factor 1B	AK013965|Eif1b|68969|eukaryotic translation initiation factor 1B	BC033505|Eif1b|68969|eukaryotic translation initiation factor 1B	AK005192|Eif1b|68969|eukaryotic translation initiation factor 1B
mm9_v1_chr19_+_7016333_7016409	0.0165707	NHLH1,2.p2	NM_007522|Bad|12015|BCL2-associated agonist of cell death	L37296|Bad|12015|BCL2-associated agonist of cell death	BC006762|Bad|12015|BCL2-associated agonist of cell death
mm9_v1_chr15_-_36070139_36070154	0.0165357	NHLH1,2.p2	AK158239|Rgs22|626596|regulator of G-protein signalling 22	NM_001195748|Rgs22|626596|regulator of G-protein signalling 22
mm9_v1_chr15_+_88692855_88692877	0.016412	NHLH1,2.p2	AY026239|Pim3|223775|proviral integration site 3
mm9_v1_chr11_-_75841236_75841315	0.0163033	NHLH1,2.p2	AK171075|Fam101b|76566|family with sequence similarity 101, member B	AK005164|Fam101b|76566|family with sequence similarity 101, member B	NM_029658|Fam101b|76566|family with sequence similarity 101, member B
mm9_v1_chr4_+_59594461_59594510	0.0162787	NHLH1,2.p2	AK085899|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	AK136773|Hsdl2|72479|hydroxysteroid dehydrogenase like 2	AK011910|Hsdl2|72479|hydroxysteroid dehydrogenase like 2
mm9_v1_chr4_+_155213937_155213950	0.0162277	NHLH1,2.p2	EU849596|Mxra8|74761|matrix-remodelling associated 8	EU849597|Mxra8|74761|matrix-remodelling associated 8
mm9_v1_chr14_-_37690597_37690679	0.0161459	NHLH1,2.p2	AK084686|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr11_-_70458027_70458216	0.0160621	NHLH1,2.p2	AK206341|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK212009|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK178451|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK210712|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	AK214004|Slc25a11|67863|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
mm9_v1_chr11_+_20124648_20124793	0.0160363	NHLH1,2.p2	AK207850|Rab1|19324|RAB1, member RAS oncogene family	AK215283|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr8_+_13060907_13061026	0.0160055	NHLH1,2.p2	AK008819|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	NM_025834|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC024104|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	BC038045|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein	AK005011|Proz|66901|protein Z, vitamin K-dependent plasma glycoprotein
mm9_v1_chr14_-_21167291_21167342	0.0158825	NHLH1,2.p2	BC013470|Ecd|70601|ecdysoneless homolog (Drosophila)	AK028664|Ecd|70601|ecdysoneless homolog (Drosophila)	NM_027475|Ecd|70601|ecdysoneless homolog (Drosophila)
mm9_v1_chr11_+_117217937_117217967	0.0157927	NHLH1,2.p2	AK211632|Sept9|53860|septin 9
mm9_v1_chr6_+_120314116_120314182	0.015778	NHLH1,2.p2	AK041568|Kdm5a|214899|lysine (K)-specific demethylase 5A	NM_145997|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK166055|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK159079|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK144877|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK139619|Kdm5a|214899|lysine (K)-specific demethylase 5A	AK046187|Kdm5a|214899|lysine (K)-specific demethylase 5A	BC011506|Kdm5a|214899|lysine (K)-specific demethylase 5A
mm9_v1_chr4_-_125839844_125839908	0.0157777	NHLH1,2.p2	BC039777|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	BC053421|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	AK076962|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	AK011430|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	BC025637|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene	NM_025856|1700029G01Rik|66938|RIKEN cDNA 1700029G01 gene
mm9_v1_chr13_-_58009599_58009635	0.015725	NHLH1,2.p2	BC158020|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	BC075625|Spock1|20745|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1
mm9_v1_chr2_+_140221224_140221330	0.0156555	NHLH1,2.p2	BC038317|Macrod2|72899|MACRO domain containing 2	BC027552|Macrod2|72899|MACRO domain containing 2	BC028443|Macrod2|72899|MACRO domain containing 2
mm9_v1_chr16_-_15863310_15863463	0.015651	NHLH1,2.p2	BC027550|Mzt2|72083|mitotic spindle organizing protein 2	AK010544|Mzt2|72083|mitotic spindle organizing protein 2	NM_029354|Mzt2|72083|mitotic spindle organizing protein 2	AK011255|Mzt2|72083|mitotic spindle organizing protein 2
mm9_v1_chr4_+_43394949_43394962	0.0155944	NHLH1,2.p2	AK166260|Rusc2|100213|RUN and SH3 domain containing 2
mm9_v1_chr14_-_65671577_65671651	0.0153697	NHLH1,2.p2	BC038525|Extl3|54616|exostoses (multiple)-like 3
mm9_v1_chr11_-_102080155_102080242	0.0153642	NHLH1,2.p2	AK156008|Hdac5|15184|histone deacetylase 5	AK157159|Hdac5|15184|histone deacetylase 5
mm9_v1_chr5_-_129459236_129459360	0.0153186	NHLH1,2.p2	NM_001081388|Rimbp2|231760|RIMS binding protein 2	AK044685|Rimbp2|231760|RIMS binding protein 2
mm9_v1_chr8_-_72240722_72240846	0.0152546	NHLH1,2.p2	BC079868|Zfp869|66869|zinc finger protein 869	AK088889|Zfp869|66869|zinc finger protein 869	AK134167|Zfp869|66869|zinc finger protein 869	AK004570|Zfp869|66869|zinc finger protein 869	AK030679|Zfp869|66869|zinc finger protein 869	AK136878|Zfp869|66869|zinc finger protein 869	NM_001039965|Zfp869|66869|zinc finger protein 869	NM_001039967|Zfp869|66869|zinc finger protein 869	AK083392|Zfp869|66869|zinc finger protein 869
mm9_v1_chr16_-_48994021_48994056	0.0152031	NHLH1,2.p2	BC052893|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117953|Dzip3|224170|DAZ interacting protein 3, zinc finger	BC117954|Dzip3|224170|DAZ interacting protein 3, zinc finger
mm9_v1_chr12_-_87419813_87420026	0.0150898	NHLH1,2.p2	AK148385|Tgfb3|21809|transforming growth factor, beta 3	BC094591|Tgfb3|21809|transforming growth factor, beta 3	BC089347|Tgfb3|21809|transforming growth factor, beta 3	AK132519|Tgfb3|21809|transforming growth factor, beta 3	AK145304|Tgfb3|21809|transforming growth factor, beta 3	BC108426|Tgfb3|21809|transforming growth factor, beta 3	NM_009368|Tgfb3|21809|transforming growth factor, beta 3
mm9_v1_chr4_+_154937914_154937943	0.015018	NHLH1,2.p2	NM_001159637|Nadk|192185|NAD kinase	AK170608|Nadk|192185|NAD kinase	AK165510|Nadk|192185|NAD kinase	AK170095|Nadk|192185|NAD kinase	AK170960|Nadk|192185|NAD kinase
mm9_v1_chr17_-_33918501_33918527	0.0149669	NHLH1,2.p2	AK014564|Angptl4|57875|angiopoietin-like 4	NM_020581|Angptl4|57875|angiopoietin-like 4
mm9_v1_chr7_-_112900699_112900744	0.0149394	NHLH1,2.p2	AJ011912|Tpp1|12751|tripeptidyl peptidase I	BC024820|Tpp1|12751|tripeptidyl peptidase I	AK170781|Tpp1|12751|tripeptidyl peptidase I	AK146759|Tpp1|12751|tripeptidyl peptidase I	AK048279|Tpp1|12751|tripeptidyl peptidase I	NM_009906|Tpp1|12751|tripeptidyl peptidase I	AK083832|Tpp1|12751|tripeptidyl peptidase I	AK169924|Tpp1|12751|tripeptidyl peptidase I	AF111172|Tpp1|12751|tripeptidyl peptidase I	AK155021|Tpp1|12751|tripeptidyl peptidase I	AK002418|Tpp1|12751|tripeptidyl peptidase I	AK165669|Tpp1|12751|tripeptidyl peptidase I
mm9_v1_chr7_+_110048855_110048882	0.0149132	NHLH1,2.p2	BC116966|Olfr570|259114|olfactory receptor 570	NM_147110|Olfr570|259114|olfactory receptor 570
mm9_v1_chr5_-_34517575_34517643	0.0149102	NHLH1,2.p2	
mm9_v1_chr11_+_101526837_101526854	0.0148431	NHLH1,2.p2	NM_025404|Arl4d|80981|ADP-ribosylation factor-like 4D
mm9_v1_chr8_-_123632191_123632278	0.0147501	NHLH1,2.p2	BC023782|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	AK141278|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	AK083317|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	BC052066|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	NM_001166482|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing	NM_172761|Mthfsd|234814|methenyltetrahydrofolate synthetase domain containing
mm9_v1_chr3_-_73512139_73512177	0.0145702	NHLH1,2.p2	AK052200|Bche|12038|butyrylcholinesterase	BC099977|Bche|12038|butyrylcholinesterase
mm9_v1_chr8_-_72435604_72435609	0.0143991	NHLH1,2.p2	AK183827|Gatad2a|234366|GATA zinc finger domain containing 2A	AK201858|Gatad2a|234366|GATA zinc finger domain containing 2A
mm9_v1_chr10_+_27794664_27794727	0.0141895	NHLH1,2.p2	AK052275|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK019870|Ptprk|19272|protein tyrosine phosphatase, receptor type, K
mm9_v1_chr6_-_25639767_25639791	0.014112	NHLH1,2.p2	AK044508|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chrX_+_45461901_45462257	0.0138507	NHLH1,2.p2	AK172086|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	NM_133213|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF428102|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK164538|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK078835|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK087627|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AK085520|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	AF367247|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	BC140977|Xpnpep2|170745|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
mm9_v1_chr1_+_74442542_74442675	0.0138372	NHLH1,2.p2	AK192838|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr5_-_144775583_144775788	0.0137863	NHLH1,2.p2	AK213761|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	BC048077|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	NM_177682|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK090008|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK171671|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK172392|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK146704|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK150793|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152328|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK152576|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK153160|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)	AK164888|Ccz1|231874|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
mm9_v1_chr15_-_75509153_75509239	0.0136899	NHLH1,2.p2	BC138582|Top1mt|72960|DNA topoisomerase 1, mitochondrial	BC138583|Top1mt|72960|DNA topoisomerase 1, mitochondrial	BC145336|Top1mt|72960|DNA topoisomerase 1, mitochondrial	AF362952|Top1mt|72960|DNA topoisomerase 1, mitochondrial	NM_028404|Top1mt|72960|DNA topoisomerase 1, mitochondrial	AK147119|Top1mt|72960|DNA topoisomerase 1, mitochondrial
mm9_v1_chr16_+_16983772_16983783	0.0136558	NHLH1,2.p2	AK216848|Mapk1|26413|mitogen-activated protein kinase 1	AK205643|Mapk1|26413|mitogen-activated protein kinase 1
mm9_v1_chr6_-_85463535_85463588	0.013591	NHLH1,2.p2	NM_020596|Egr4|13656|early growth response 4	AK141637|Egr4|13656|early growth response 4
mm9_v1_chr14_+_56223001_56223063	0.0135906	NHLH1,2.p2	U51992|Irf9|16391|interferon regulatory factor 9	BC005435|Irf9|16391|interferon regulatory factor 9
mm9_v1_chr1_+_154613622_154613679	0.0135897	NHLH1,2.p2	NM_026369|Arpc5|67771|actin related protein 2/3 complex, subunit 5
mm9_v1_chr14_-_56402855_56402888	0.0135594	NHLH1,2.p2	AF442771|Adcy4|104110|adenylate cyclase 4	BC015299|Adcy4|104110|adenylate cyclase 4	NM_080435|Adcy4|104110|adenylate cyclase 4	AK161880|Adcy4|104110|adenylate cyclase 4	AK141767|Adcy4|104110|adenylate cyclase 4
mm9_v1_chr11_-_58745825_58746102	0.0135326	NHLH1,2.p2	AK219828|Rnf187|108660|ring finger protein 187
mm9_v1_chr2_+_32442949_32443144	0.0135123	NHLH1,2.p2	Y15780|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC086784|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	NM_011373|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	BC056451|St6galnac4|20448|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm9_v1_chr13_-_23802635_23802683	0.0134087	NHLH1,2.p2	BC116746|Hfe|15216|hemochromatosis	BC116744|Hfe|15216|hemochromatosis	U66849|Hfe|15216|hemochromatosis	AK009581|Hfe|15216|hemochromatosis	AK088986|Hfe|15216|hemochromatosis	NM_010424|Hfe|15216|hemochromatosis
mm9_v1_chr1_-_134539434_134539434	0.0133856	NHLH1,2.p2	NM_001160316|Nfasc|269116|neurofascin
mm9_v1_chr16_-_85030543_85030555	0.0132862	NHLH1,2.p2	AK076506|App|11820|amyloid beta (A4) precursor protein	AK200287|App|11820|amyloid beta (A4) precursor protein	AK203089|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr2_+_155212610_155212626	0.0132848	NHLH1,2.p2	AK190675|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr1_+_135027990_135028111	0.0131629	NHLH1,2.p2	AK144678|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK146089|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK049028|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b	AK086606|Ppp1r15b|108954|protein phosphatase 1, regulatory (inhibitor) subunit 15b
mm9_v1_chr11_-_100276112_100276132	0.0131036	NHLH1,2.p2	BC031856|Leprel4|66180|leprecan-like 4	NM_176830|Leprel4|66180|leprecan-like 4
mm9_v1_chr13_-_37141055_37141088	0.012967	NHLH1,2.p2	AK163591|F13a1|74145|coagulation factor XIII, A1 subunit	BC040274|F13a1|74145|coagulation factor XIII, A1 subunit	AK036403|F13a1|74145|coagulation factor XIII, A1 subunit	AK049092|F13a1|74145|coagulation factor XIII, A1 subunit	AK165311|F13a1|74145|coagulation factor XIII, A1 subunit	AK170215|F13a1|74145|coagulation factor XIII, A1 subunit	AK170278|F13a1|74145|coagulation factor XIII, A1 subunit	AK170860|F13a1|74145|coagulation factor XIII, A1 subunit	AK171273|F13a1|74145|coagulation factor XIII, A1 subunit	NM_028784|F13a1|74145|coagulation factor XIII, A1 subunit
mm9_v1_chr11_-_53705199_53705212	0.0128429	NHLH1,2.p2	AK140640|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5	NM_011396|Slc22a5|20520|solute carrier family 22 (organic cation transporter), member 5
mm9_v1_chr14_-_51490216_51490230	0.0128087	NHLH1,2.p2	U86137|Tep1|21745|telomerase associated protein 1	NM_009351|Tep1|21745|telomerase associated protein 1	BC082996|Tep1|21745|telomerase associated protein 1
mm9_v1_chr3_-_5576086_5576166	0.0127906	NHLH1,2.p2	BC012404|Pxmp3|19302|peroxisomal membrane protein 3	AK151121|Pxmp3|19302|peroxisomal membrane protein 3	AK152331|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163304|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163305|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163306|Pxmp3|19302|peroxisomal membrane protein 3	NM_008994|Pxmp3|19302|peroxisomal membrane protein 3	AK146530|Pxmp3|19302|peroxisomal membrane protein 3	NM_001163301|Pxmp3|19302|peroxisomal membrane protein 3
mm9_v1_chr11_-_3404756_3404831	0.0126345	NHLH1,2.p2	BC022915|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK171029|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK170114|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC051452|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK165718|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK136908|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC131635|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	BC131634|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	AK034272|Inpp5j|170835|inositol polyphosphate 5-phosphatase J	NM_172439|Inpp5j|170835|inositol polyphosphate 5-phosphatase J
mm9_v1_chr9_+_119011595_119011647	0.0126289	NHLH1,2.p2	AK045848|Dlec1|320256|deleted in lung and esophageal cancer 1	NM_177117|Dlec1|320256|deleted in lung and esophageal cancer 1	BC145277|Dlec1|320256|deleted in lung and esophageal cancer 1	BC145278|Dlec1|320256|deleted in lung and esophageal cancer 1	AK133987|Dlec1|320256|deleted in lung and esophageal cancer 1
mm9_v1_chr2_-_65201979_65202090	0.0126157	NHLH1,2.p2	AK041015|Slc38a11|320106|solute carrier family 38, member 11	AK139966|Slc38a11|320106|solute carrier family 38, member 11	NM_177074|Slc38a11|320106|solute carrier family 38, member 11	AK034126|Slc38a11|320106|solute carrier family 38, member 11	AK043610|Slc38a11|320106|solute carrier family 38, member 11
mm9_v1_chr18_-_52689185_52689268	0.0125522	NHLH1,2.p2	AK166279|Lox|16948|lysyl oxidase	AK159682|Lox|16948|lysyl oxidase	AK159368|Lox|16948|lysyl oxidase	M65142|Lox|16948|lysyl oxidase	AK159796|Lox|16948|lysyl oxidase	AK160096|Lox|16948|lysyl oxidase	AK159241|Lox|16948|lysyl oxidase
mm9_v1_chr8_+_114061310_114061413	0.0125045	NHLH1,2.p2	AK078819|Znrf1|170737|zinc and ring finger 1	AK076756|Znrf1|170737|zinc and ring finger 1	AK216619|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr14_-_7859962_7859962	0.012443	NHLH1,2.p2	NM_001164727|Gm10406|100038847|predicted gene 10406
mm9_v1_chr10_+_27794625_27794662	0.0121796	NHLH1,2.p2	NM_008983|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK078614|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC138376|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	BC145261|Ptprk|19272|protein tyrosine phosphatase, receptor type, K	AK083006|Ptprk|19272|protein tyrosine phosphatase, receptor type, K
mm9_v1_chr10_+_121176978_121177017	0.0121653	NHLH1,2.p2	BC065058|BC048403|270802|cDNA sequence BC048403	NM_173022|BC048403|270802|cDNA sequence BC048403	AK166238|BC048403|270802|cDNA sequence BC048403	AK138662|BC048403|270802|cDNA sequence BC048403	AK162911|BC048403|270802|cDNA sequence BC048403	AK087110|BC048403|270802|cDNA sequence BC048403	AK169891|BC048403|270802|cDNA sequence BC048403
mm9_v1_chr2_-_120229789_120229851	0.0121213	NHLH1,2.p2	AK086738|Tmem87a|211499|transmembrane protein 87A	BC004047|Tmem87a|211499|transmembrane protein 87A	AK044591|Tmem87a|211499|transmembrane protein 87A	AK134268|Tmem87a|211499|transmembrane protein 87A	AK137137|Tmem87a|211499|transmembrane protein 87A	BC027354|Tmem87a|211499|transmembrane protein 87A	AK088559|Tmem87a|211499|transmembrane protein 87A	NM_001110496|Tmem87a|211499|transmembrane protein 87A	NM_001110497|Tmem87a|211499|transmembrane protein 87A	NM_173734|Tmem87a|211499|transmembrane protein 87A
mm9_v1_chr10_+_80643263_80643395	0.0120672	NHLH1,2.p2	AK189998|Eef2|13629|eukaryotic translation elongation factor 2	AK190198|Eef2|13629|eukaryotic translation elongation factor 2	AK190350|Eef2|13629|eukaryotic translation elongation factor 2	AK190868|Eef2|13629|eukaryotic translation elongation factor 2	AK191552|Eef2|13629|eukaryotic translation elongation factor 2	AK191881|Eef2|13629|eukaryotic translation elongation factor 2	AK192244|Eef2|13629|eukaryotic translation elongation factor 2	AK192889|Eef2|13629|eukaryotic translation elongation factor 2	AK192915|Eef2|13629|eukaryotic translation elongation factor 2	AK193101|Eef2|13629|eukaryotic translation elongation factor 2	AK193468|Eef2|13629|eukaryotic translation elongation factor 2	AK193703|Eef2|13629|eukaryotic translation elongation factor 2	AK193872|Eef2|13629|eukaryotic translation elongation factor 2	AK194719|Eef2|13629|eukaryotic translation elongation factor 2	AK195368|Eef2|13629|eukaryotic translation elongation factor 2	AK195633|Eef2|13629|eukaryotic translation elongation factor 2	AK195893|Eef2|13629|eukaryotic translation elongation factor 2	AK196946|Eef2|13629|eukaryotic translation elongation factor 2	AK197219|Eef2|13629|eukaryotic translation elongation factor 2	AK197725|Eef2|13629|eukaryotic translation elongation factor 2	AK198008|Eef2|13629|eukaryotic translation elongation factor 2	AK198317|Eef2|13629|eukaryotic translation elongation factor 2	AK198429|Eef2|13629|eukaryotic translation elongation factor 2	AK199118|Eef2|13629|eukaryotic translation elongation factor 2	AK200031|Eef2|13629|eukaryotic translation elongation factor 2	AK200070|Eef2|13629|eukaryotic translation elongation factor 2	AK200383|Eef2|13629|eukaryotic translation elongation factor 2	AK201054|Eef2|13629|eukaryotic translation elongation factor 2	AK201169|Eef2|13629|eukaryotic translation elongation factor 2	AK201226|Eef2|13629|eukaryotic translation elongation factor 2	AK201313|Eef2|13629|eukaryotic translation elongation factor 2	AK201376|Eef2|13629|eukaryotic translation elongation factor 2	AK202006|Eef2|13629|eukaryotic translation elongation factor 2	AK202706|Eef2|13629|eukaryotic translation elongation factor 2	AK202834|Eef2|13629|eukaryotic translation elongation factor 2	AK203709|Eef2|13629|eukaryotic translation elongation factor 2	AK203838|Eef2|13629|eukaryotic translation elongation factor 2	AK204069|Eef2|13629|eukaryotic translation elongation factor 2	AK204359|Eef2|13629|eukaryotic translation elongation factor 2	AK204850|Eef2|13629|eukaryotic translation elongation factor 2	AK207898|Eef2|13629|eukaryotic translation elongation factor 2	AK215864|Eef2|13629|eukaryotic translation elongation factor 2	AK215877|Eef2|13629|eukaryotic translation elongation factor 2
mm9_v1_chr9_-_54896301_54896396	0.0118957	NHLH1,2.p2	AY574269|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	AF492840|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	BC138851|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	AK140071|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	NM_148944|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4	BC094889|Chrnb4|108015|cholinergic receptor, nicotinic, beta polypeptide 4
mm9_v1_chr7_+_19918350_19918477	0.011877	NHLH1,2.p2	
mm9_v1_chr2_-_17652725_17652774	0.0118656	NHLH1,2.p2	AK077837|Nebl|74103|nebulette
mm9_v1_chr7_-_148379755_148379780	0.0118597	NHLH1,2.p2	BC011083|Hras1|15461|Harvey rat sarcoma virus oncogene 1
mm9_v1_chr2_+_32391249_32391261	0.011799	NHLH1,2.p2	AK157331|Fam102a|98952|family with sequence similarity 102, member A	AK157490|Fam102a|98952|family with sequence similarity 102, member A	AK158435|Fam102a|98952|family with sequence similarity 102, member A	AK165751|Fam102a|98952|family with sequence similarity 102, member A	AK170951|Fam102a|98952|family with sequence similarity 102, member A	AK172536|Fam102a|98952|family with sequence similarity 102, member A	AK170847|Fam102a|98952|family with sequence similarity 102, member A
mm9_v1_chr19_-_4801605_4801652	0.0117409	NHLH1,2.p2	
mm9_v1_chr3_+_137581449_137581573	0.0117264	NHLH1,2.p2	AK151432|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AK088454|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AF082526|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	NM_019920|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AK159450|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	AK162102|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	BC016417|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	BC083155|Lamtor3|56692|late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
mm9_v1_chr4_-_106136929_106136933	0.0116653	NHLH1,2.p2	NM_153565|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9	BC038085|Pcsk9|100102|proprotein convertase subtilisin/kexin type 9
mm9_v1_chr7_+_106530044_106530083	0.0116652	NHLH1,2.p2	BC082585|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5	NM_201352|Gdpd5|233552|glycerophosphodiester phosphodiesterase domain containing 5
mm9_v1_chr10_+_127529818_127529845	0.0116641	NHLH1,2.p2	AK133149|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	BC048415|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A	NM_054078|Baz2a|116848|bromodomain adjacent to zinc finger domain, 2A
mm9_v1_chr16_+_91406408_91406577	0.0116243	NHLH1,2.p2	AK160991|Il10rb|16155|interleukin 10 receptor, beta	BC145791|Il10rb|16155|interleukin 10 receptor, beta	NM_008349|Il10rb|16155|interleukin 10 receptor, beta	AK134042|Il10rb|16155|interleukin 10 receptor, beta	AF440787|Il10rb|16155|interleukin 10 receptor, beta	AK040938|Il10rb|16155|interleukin 10 receptor, beta	U53696|Il10rb|16155|interleukin 10 receptor, beta
mm9_v1_chr16_-_34263047_34263052	0.0116056	NHLH1,2.p2	AK159031|Kalrn|545156|kalirin, RhoGEF kinase
mm9_v1_chr11_+_87912709_87912809	0.0115679	NHLH1,2.p2	BC025434|Cuedc1|103841|CUE domain containing 1	BC024476|Cuedc1|103841|CUE domain containing 1
mm9_v1_chr11_-_50655047_50655053	0.0115483	NHLH1,2.p2	BC118537|Zfp879|214779|zinc figer protein 879	AK036152|Zfp879|214779|zinc figer protein 879	NM_173387|Zfp879|214779|zinc figer protein 879
mm9_v1_chr19_-_42007761_42007813	0.0114325	NHLH1,2.p2	BC024423|Exosc1|66583|exosome component 1	AK006333|Exosc1|66583|exosome component 1	AK011817|Exosc1|66583|exosome component 1	AK012015|Exosc1|66583|exosome component 1	AK006018|Exosc1|66583|exosome component 1	AK002930|Exosc1|66583|exosome component 1	NM_001164561|Exosc1|66583|exosome component 1	NM_025644|Exosc1|66583|exosome component 1
mm9_v1_chr10_-_126626878_126627109	0.0113703	NHLH1,2.p2	AK158684|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_001166413|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AF487515|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	AK010452|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	BC041113|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25	NM_028027|Arhgef25|52666|Rho guanine nucleotide exchange factor (GEF) 25
mm9_v1_chr6_+_71443984_71443996	0.0111872	NHLH1,2.p2	BC137624|Rnf103|22644|ring finger protein 103
mm9_v1_chr7_-_4453210_4453293	0.0111016	NHLH1,2.p2	AK144521|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK046570|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK010836|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	AK144691|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C	NM_029834|Ppp1r12c|232807|protein phosphatase 1, regulatory (inhibitor) subunit 12C
mm9_v1_chr16_-_88648032_88648040	0.0110418	NHLH1,2.p2	BC128283|Krtap26-1|69533|keratin associated protein 26-1	BC139410|Krtap26-1|69533|keratin associated protein 26-1	BC139411|Krtap26-1|69533|keratin associated protein 26-1	AK009086|Krtap26-1|69533|keratin associated protein 26-1	NM_027105|Krtap26-1|69533|keratin associated protein 26-1
mm9_v1_chrX_-_131076136_131076235	0.0109764	NHLH1,2.p2	BC004796|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AF150081|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK088903|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK165573|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AB031055|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	BC094631|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	NM_013898|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK011402|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)	AK090079|Timm8a1|30058|translocase of inner mitochondrial membrane 8 homolog a1 (yeast)
mm9_v1_chr15_+_44450689_44451235	0.0108974	NHLH1,2.p2	BC026717|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AK160149|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AK159499|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	AY009091|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC108397|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	NM_019480|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC119118|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC119120|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9	BC144740|Ebag9|55960|estrogen receptor-binding fragment-associated gene 9
mm9_v1_chr5_-_21151348_21151451	0.010852	NHLH1,2.p2	BC145291|Fbxl13|320118|F-box and leucine-rich repeat protein 13	BC145292|Fbxl13|320118|F-box and leucine-rich repeat protein 13	AK030172|Fbxl13|320118|F-box and leucine-rich repeat protein 13	AK029566|Fbxl13|320118|F-box and leucine-rich repeat protein 13	NM_177076|Fbxl13|320118|F-box and leucine-rich repeat protein 13
mm9_v1_chr13_-_67500685_67500702	0.0108356	NHLH1,2.p2	AK083314|Zfp429|72807|zinc finger protein 429	BC046484|Zfp429|72807|zinc finger protein 429	NM_001080941|Zfp429|72807|zinc finger protein 429
mm9_v1_chr4_-_122563074_122563173	0.0107901	NHLH1,2.p2	AK169652|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK144094|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK165565|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK171388|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK162629|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK137222|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK128889|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	L12367|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK158150|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK170901|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK156556|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	AK053351|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)	NM_007598|Cap1|12331|CAP, adenylate cyclase-associated protein 1 (yeast)
mm9_v1_chr5_-_140865121_140865262	0.0107345	NHLH1,2.p2	AK045061|Snx8|231834|sorting nexin 8	AK082871|Snx8|231834|sorting nexin 8	AK148429|Snx8|231834|sorting nexin 8	NM_172277|Snx8|231834|sorting nexin 8	BC037599|Snx8|231834|sorting nexin 8
mm9_v1_chr7_-_52870858_52870859	0.0107276	NHLH1,2.p2	BC049592|Fgf21|56636|fibroblast growth factor 21	AK007574|Fgf21|56636|fibroblast growth factor 21	NM_020013|Fgf21|56636|fibroblast growth factor 21
mm9_v1_chr2_-_164860272_164860295	0.0107065	NHLH1,2.p2	BC017152|Ncoa5|228869|nuclear receptor coactivator 5	NM_144892|Ncoa5|228869|nuclear receptor coactivator 5
mm9_v1_chr9_-_59334393_59334511	0.0106359	NHLH1,2.p2	BC057680|Arih1|23806|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm9_v1_chr5_-_114723758_114723815	0.0106065	NHLH1,2.p2	BC092242|Foxn4|116810|forkhead box N4	AF323488|Foxn4|116810|forkhead box N4	BC130222|Foxn4|116810|forkhead box N4	NM_148935|Foxn4|116810|forkhead box N4	AY039039|Foxn4|116810|forkhead box N4
mm9_v1_chr1_-_170361789_170361795	0.0105945	NHLH1,2.p2	AK084143|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr2_-_17652669_17652710	0.0105306	NHLH1,2.p2	BC025863|Nebl|74103|nebulette	AK036214|Nebl|74103|nebulette	AK004645|Nebl|74103|nebulette	NM_028757|Nebl|74103|nebulette
mm9_v1_chr17_-_36304646_36304671	0.0101657	NHLH1,2.p2	AB267095|Gm8909|667977|predicted gene 8909
mm9_v1_chr4_+_150302107_150302108	0.0100086	NHLH1,2.p2	NM_001077509|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9	AK154625|Tnfrsf9|21942|tumor necrosis factor receptor superfamily, member 9
mm9_v1_chr12_-_71203819_71203840	0.00997527	NHLH1,2.p2	AY515727|Nin|18080|ninein	NM_001081453|Nin|18080|ninein
mm9_v1_chr11_+_72261267_72261276	0.00985704	NHLH1,2.p2	AK197626|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr4_-_134909036_134909128	0.0098568	NHLH1,2.p2	BC094322|Srrm1|51796|serine/arginine repetitive matrix 1	BC079542|Srrm1|51796|serine/arginine repetitive matrix 1	AF062655|Srrm1|51796|serine/arginine repetitive matrix 1	AK008284|Srrm1|51796|serine/arginine repetitive matrix 1	AK028412|Srrm1|51796|serine/arginine repetitive matrix 1	NM_001130477|Srrm1|51796|serine/arginine repetitive matrix 1	NM_016799|Srrm1|51796|serine/arginine repetitive matrix 1
mm9_v1_chr6_+_63206819_63206850	0.00982964	NHLH1,2.p2	AK036192|Grid2|14804|glutamate receptor, ionotropic, delta 2	BC139823|Grid2|14804|glutamate receptor, ionotropic, delta 2	D13266|Grid2|14804|glutamate receptor, ionotropic, delta 2	NM_008167|Grid2|14804|glutamate receptor, ionotropic, delta 2
mm9_v1_chr17_-_51318492_51318600	0.00976226	NHLH1,2.p2	BC043113|Tbc1d5|72238|TBC1 domain family, member 5	BC098328|Tbc1d5|72238|TBC1 domain family, member 5	AK033710|Tbc1d5|72238|TBC1 domain family, member 5
mm9_v1_chr7_-_135381486_135381579	0.00975113	NHLH1,2.p2	AK033604|9130023H24Rik|100043133|RIKEN cDNA 9130023H24 gene	AK084086|9130023H24Rik|100043133|RIKEN cDNA 9130023H24 gene	NM_177001|9130023H24Rik|100043133|RIKEN cDNA 9130023H24 gene
mm9_v1_chr8_-_23016871_23016903	0.00973403	NHLH1,2.p2	BC099849|Defb11|246081|defensin beta 11	AJ437646|Defb11|246081|defensin beta 11	NM_139221|Defb11|246081|defensin beta 11
mm9_v1_chr7_-_107520411_107520510	0.00958362	NHLH1,2.p2	AK146268|Ppme1|72590|protein phosphatase methylesterase 1	AK028261|Ppme1|72590|protein phosphatase methylesterase 1	AK012256|Ppme1|72590|protein phosphatase methylesterase 1	AK154876|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr13_-_96902531_96902531	0.00956141	NHLH1,2.p2	AK173092|Sv2c|75209|synaptic vesicle glycoprotein 2c	NM_029210|Sv2c|75209|synaptic vesicle glycoprotein 2c
mm9_v1_chr11_+_72812583_72812651	0.0095272	NHLH1,2.p2	AF310647|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	BC015084|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	AK035304|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	NM_008771|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1	X84896|P2rx1|18436|purinergic receptor P2X, ligand-gated ion channel, 1
mm9_v1_chrX_-_42143166_42143193	0.00951097	NHLH1,2.p2	BC068319|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK034343|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1	AK039767|Dcaf12l1|245404|DDB1 and CUL4 associated factor 12-like 1
mm9_v1_chr10_+_98570768_98570804	0.00950092	NHLH1,2.p2	NM_015737|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	AK153253|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	BC057882|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	AK148036|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	AK033494|Galnt4|14426|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4
mm9_v1_chr6_+_8898613_8898694	0.00922141	NHLH1,2.p2	AK083014|Nxph1|18231|neurexophilin 1
mm9_v1_chr9_+_3335472_3335500	0.00919845	NHLH1,2.p2	AK020197|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK054267|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK081459|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK133489|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK041810|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)	AK033352|Alkbh8|67667|alkB, alkylation repair homolog 8 (E. coli)
mm9_v1_chr8_-_129117310_129117573	0.00904263	NHLH1,2.p2	NM_001164598|Irf2bp2|270110|interferon regulatory factor 2 binding protein 2
mm9_v1_chr7_-_108112785_108112972	0.00901995	NHLH1,2.p2	AX775901|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	BC064095|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	BC027331|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK008436|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK008496|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	NM_183168|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6	AK142680|P2ry6|233571|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm9_v1_chr6_-_25639835_25639849	0.00880118	NHLH1,2.p2	BC031918|Gpr37|14763|G protein-coupled receptor 37
mm9_v1_chr14_+_32898913_32898957	0.00878465	NHLH1,2.p2	AK139884|Oxnad1|218885|oxidoreductase NAD-binding domain containing 1	NM_145460|Oxnad1|218885|oxidoreductase NAD-binding domain containing 1
mm9_v1_chrX_+_70473616_70473668	0.00876727	NHLH1,2.p2	BC131938|F8a|14070|factor 8-associated gene A	BC131940|F8a|14070|factor 8-associated gene A	AK046025|F8a|14070|factor 8-associated gene A	AK046459|F8a|14070|factor 8-associated gene A	AK166334|F8a|14070|factor 8-associated gene A	AK033184|F8a|14070|factor 8-associated gene A	AK054140|F8a|14070|factor 8-associated gene A	NM_007978|F8a|14070|factor 8-associated gene A
mm9_v1_chr11_+_78085325_78085440	0.00871771	NHLH1,2.p2	BC040464|2610507B11Rik|72503|RIKEN cDNA 2610507B11 gene
mm9_v1_chr7_-_133616266_133616638	0.00864656	NHLH1,2.p2	AK173145|Sh2b1|20399|SH2B adaptor protein 1	AK216851|Sh2b1|20399|SH2B adaptor protein 1	AF074329|Sh2b1|20399|SH2B adaptor protein 1	BC011422|Sh2b1|20399|SH2B adaptor protein 1
mm9_v1_chr19_+_23215817_23215902	0.00861543	NHLH1,2.p2	BC138724|Klf9|16601|Kruppel-like factor 9	BC138725|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr16_+_3744231_3744292	0.00855344	NHLH1,2.p2	BC011505|Zfp263|74120|zinc finger protein 263	BC056222|Zfp263|74120|zinc finger protein 263
mm9_v1_chr11_-_102178559_102178600	0.0085401	NHLH1,2.p2	AK158861|Ubtf|21429|upstream binding transcription factor, RNA polymerase I	NM_001044383|Ubtf|21429|upstream binding transcription factor, RNA polymerase I
mm9_v1_chr19_-_60950373_60950471	0.00850125	NHLH1,2.p2	AK002448|Prdx3|11757|peroxiredoxin 3	BC005626|Prdx3|11757|peroxiredoxin 3	M28723|Prdx3|11757|peroxiredoxin 3	NM_007452|Prdx3|11757|peroxiredoxin 3
mm9_v1_chr2_-_130223285_130223364	0.00823063	NHLH1,2.p2	BC003713|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	AF077738|Cpxm1|56264|carboxypeptidase X 1 (M14 family)	NM_019696|Cpxm1|56264|carboxypeptidase X 1 (M14 family)
mm9_v1_chr3_-_135354151_135354490	0.00819757	NHLH1,2.p2	M57999|Nfkb1|18033|nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105
mm9_v1_chr7_+_128084130_128084187	0.00819248	NHLH1,2.p2	AK002918|Polr3e|26939|polymerase (RNA) III (DNA directed) polypeptide E
mm9_v1_chr4_+_42930076_42930171	0.00817278	NHLH1,2.p2	BC057092|N28178|230085|expressed sequence N28178	NM_172690|N28178|230085|expressed sequence N28178	AK046283|N28178|230085|expressed sequence N28178	AK038528|N28178|230085|expressed sequence N28178
mm9_v1_chr10_+_127848671_127848731	0.00810129	NHLH1,2.p2	AK045760|Rnf41|67588|ring finger protein 41	NM_001164237|Rnf41|67588|ring finger protein 41	NM_026259|Rnf41|67588|ring finger protein 41	AK030558|Rnf41|67588|ring finger protein 41	BC049078|Rnf41|67588|ring finger protein 41	AF305730|Rnf41|67588|ring finger protein 41
mm9_v1_chr6_+_140572347_140572427	0.00808001	NHLH1,2.p2	BC031376|Aebp2|11569|AE binding protein 2
mm9_v1_chr2_+_91050920_91051054	0.00805719	NHLH1,2.p2	AK080581|Acp2|11432|acid phosphatase 2, lysosomal
mm9_v1_chr14_+_30806158_30806226	0.00804347	NHLH1,2.p2	AK179069|Actr8|56249|ARP8 actin-related protein 8 homolog (S. cerevisiae)
mm9_v1_chr14_+_55045792_55045808	0.00804024	NHLH1,2.p2	BC060043|Mrpl52|68836|mitochondrial ribosomal protein L52
mm9_v1_chr11_-_115560691_115560842	0.00800334	NHLH1,2.p2	AK077750|Grb2|14784|growth factor receptor bound protein 2	AK079087|Grb2|14784|growth factor receptor bound protein 2	AK153557|Grb2|14784|growth factor receptor bound protein 2
mm9_v1_chr11_+_69209261_69209338	0.00779508	NHLH1,2.p2	AK018782|Lsmd1|78304|LSM domain containing 1	NM_030083|Lsmd1|78304|LSM domain containing 1	BC048499|Lsmd1|78304|LSM domain containing 1	BC062267|Lsmd1|78304|LSM domain containing 1	BC038659|Lsmd1|78304|LSM domain containing 1
mm9_v1_chr4_-_141161882_141162024	0.00765786	NHLH1,2.p2	AK170440|Fblim1|74202|filamin binding LIM protein 1	AK154680|Fblim1|74202|filamin binding LIM protein 1	AK163587|Fblim1|74202|filamin binding LIM protein 1	AK170151|Fblim1|74202|filamin binding LIM protein 1	NM_133754|Fblim1|74202|filamin binding LIM protein 1
mm9_v1_chr5_+_31215857_31215866	0.00741421	NHLH1,2.p2	AK155486|Emilin1|100952|elastin microfibril interfacer 1
mm9_v1_chr10_-_80139032_80139051	0.00740516	NHLH1,2.p2	AK154235|Mknk2|17347|MAP kinase-interacting serine/threonine kinase 2
mm9_v1_chr5_-_24781987_24782111	0.00738008	NHLH1,2.p2	AK077567|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr2_+_164716626_164716724	0.00734596	NHLH1,2.p2	
mm9_v1_chr4_+_137476662_137476741	0.00731789	NHLH1,2.p2	AK163790|Ece1|230857|endothelin converting enzyme 1
mm9_v1_chr5_-_124574562_124574677	0.00730406	NHLH1,2.p2	AK149575|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr15_+_81297235_81297246	0.00719572	NHLH1,2.p2	AK149259|Rbx1|56438|ring-box 1
mm9_v1_chr9_-_58160769_58160855	0.00697738	NHLH1,2.p2	AF357006|Loxl1|16949|lysyl oxidase-like 1
mm9_v1_chr12_-_104681842_104681891	0.00693144	NHLH1,2.p2	AY090098|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	AK040279|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	AK160503|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	BC086889|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	BC100588|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A	NM_029803|Ifi27l2a|76933|interferon, alpha-inducible protein 27 like 2A
mm9_v1_chr17_+_49071906_49072030	0.00690463	NHLH1,2.p2	BC139418|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	NM_027452|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	AK122476|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2	AK044375|Lrfn2|70530|leucine rich repeat and fibronectin type III domain containing 2
mm9_v1_chr1_+_57434514_57434552	0.00684492	NHLH1,2.p2	AK006906|1700066M21Rik|73467|RIKEN cDNA 1700066M21 gene
mm9_v1_chr1_+_87804443_87804463	0.00674328	NHLH1,2.p2	AK190372|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr14_+_35033231_35033322	0.00664326	NHLH1,2.p2	AK042641|Syt15|319508|synaptotagmin XV	NM_176931|Syt15|319508|synaptotagmin XV	NM_181529|Syt15|319508|synaptotagmin XV	AK054180|Syt15|319508|synaptotagmin XV	BC139314|Syt15|319508|synaptotagmin XV	BC139313|Syt15|319508|synaptotagmin XV
mm9_v1_chrY_-_622984_622997	0.00648759	NHLH1,2.p2	BC021453|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr2_-_18919637_18919800	0.00646972	NHLH1,2.p2	AK040558|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	BC011097|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	AK012196|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	NM_008845|Pip4k2a|18718|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm9_v1_chr7_+_50469408_50469408	0.00645876	NHLH1,2.p2	EU599041|EU599041|100170401|expressed sequence EU599041	EU599042|EU599041|100170401|expressed sequence EU599041	NM_001177525|EU599041|100170401|expressed sequence EU599041
mm9_v1_chr15_+_76369247_76369393	0.00644425	NHLH1,2.p2	AK161447|Gpr172b|52710|G protein-coupled receptor 172B	AK142597|Gpr172b|52710|G protein-coupled receptor 172B	AK080449|Gpr172b|52710|G protein-coupled receptor 172B	BC016264|Gpr172b|52710|G protein-coupled receptor 172B	AK152335|Gpr172b|52710|G protein-coupled receptor 172B	AK029579|Gpr172b|52710|G protein-coupled receptor 172B	NM_029643|Gpr172b|52710|G protein-coupled receptor 172B	AK008081|Gpr172b|52710|G protein-coupled receptor 172B	AK032015|Gpr172b|52710|G protein-coupled receptor 172B
mm9_v1_chr7_-_52749530_52749570	0.00640737	NHLH1,2.p2	AK179888|Nucb1|18220|nucleobindin 1	AK215214|Nucb1|18220|nucleobindin 1	AK216538|Nucb1|18220|nucleobindin 1	AK034944|Nucb1|18220|nucleobindin 1
mm9_v1_chr8_-_73223897_73223993	0.00640099	NHLH1,2.p2	AK135112|Gm11175|100303737|predicted gene 11175
mm9_v1_chr12_+_73543228_73543345	0.00639976	NHLH1,2.p2	AK082549|Lrrc9|78257|leucine rich repeat containing 9	AK031279|Lrrc9|78257|leucine rich repeat containing 9	NM_001142729|Lrrc9|78257|leucine rich repeat containing 9	AK039037|Lrrc9|78257|leucine rich repeat containing 9
mm9_v1_chr13_+_23776066_23776084	0.00629092	NHLH1,2.p2	AK011516|Hist1h2bc|68024|histone cluster 1, H2bc	NM_023422|Hist1h2bc|68024|histone cluster 1, H2bc	AK005191|Hist1h2bc|68024|histone cluster 1, H2bc	AK005407|Hist1h2bc|68024|histone cluster 1, H2bc	BC019673|Hist1h2bc|68024|histone cluster 1, H2bc	BC082774|Hist1h2bc|68024|histone cluster 1, H2bc
mm9_v1_chr6_-_127076410_127076426	0.00627557	NHLH1,2.p2	AK011225|Ccnd2|12444|cyclin D2
mm9_v1_chr1_+_6204729_6204756	0.00626321	NHLH1,2.p2	AB050017|Rb1cc1|12421|RB1-inducible coiled-coil 1	AB070619|Rb1cc1|12421|RB1-inducible coiled-coil 1	NM_009826|Rb1cc1|12421|RB1-inducible coiled-coil 1	AK020027|Rb1cc1|12421|RB1-inducible coiled-coil 1
mm9_v1_chr19_+_57435735_57435759	0.00619658	NHLH1,2.p2	BC062949|Fam160b1|226252|family with sequence similarity 160, member B1
mm9_v1_chr10_+_84380305_84380360	0.00612412	NHLH1,2.p2	BC051080|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)	NM_183172|Ric8b|237422|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm9_v1_chr10_-_95026390_95026668	0.00603668	NHLH1,2.p2	CT010342|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK211623|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	AK216782|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4	BC027209|Nudt4|71207|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm9_v1_chr5_-_92511942_92511942	0.0059121	NHLH1,2.p2	AK149427|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	NM_001080797|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr6_+_113647492_113647666	0.00590686	NHLH1,2.p2	AK156197|Tatdn2|381801|TatD DNase domain containing 2	NM_001033463|Tatdn2|381801|TatD DNase domain containing 2	BC141065|Tatdn2|381801|TatD DNase domain containing 2	BC145318|Tatdn2|381801|TatD DNase domain containing 2	AK220217|Tatdn2|381801|TatD DNase domain containing 2
mm9_v1_chr1_-_158869401_158869517	0.0058706	NHLH1,2.p2	AK019543|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2	NM_001159966|Ralgps2|78255|Ral GEF with PH domain and SH3 binding motif 2
mm9_v1_chr8_-_107058475_107058542	0.00585962	NHLH1,2.p2	BC027124|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	BC023897|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	AK162251|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	AK166792|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	AK146202|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	BC021510|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	BC019163|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	BC023680|Nae1|234664|NEDD8 activating enzyme E1 subunit 1	NM_144931|Nae1|234664|NEDD8 activating enzyme E1 subunit 1
mm9_v1_chr16_+_26581790_26581827	0.00583405	NHLH1,2.p2	NM_001159317|Il1rap|16180|interleukin 1 receptor accessory protein	NM_001159318|Il1rap|16180|interleukin 1 receptor accessory protein	NM_008364|Il1rap|16180|interleukin 1 receptor accessory protein	NM_134103|Il1rap|16180|interleukin 1 receptor accessory protein	AK083209|Il1rap|16180|interleukin 1 receptor accessory protein	AK034269|Il1rap|16180|interleukin 1 receptor accessory protein
mm9_v1_chr2_-_24790784_24790800	0.00576132	NHLH1,2.p2	NM_001162485|Arrdc1|215705|arrestin domain containing 1	NM_178408|Arrdc1|215705|arrestin domain containing 1
mm9_v1_chr11_+_98671106_98671158	0.00567919	NHLH1,2.p2	NM_138660|Casc3|192160|cancer susceptibility candidate 3	AF526276|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr17_-_25864310_25864359	0.00566662	NHLH1,2.p2	BC083096|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	AK052673|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	AK077947|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	BC024142|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)	NM_145409|Chtf18|214901|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)
mm9_v1_chr9_-_14419410_14419443	0.00566036	NHLH1,2.p2	NM_001081395|Amotl1|75723|angiomotin-like 1
mm9_v1_chr11_+_60268108_60268134	0.00565418	NHLH1,2.p2	AJ243590|Drg2|13495|developmentally regulated GTP binding protein 2	NM_021354|Drg2|13495|developmentally regulated GTP binding protein 2
mm9_v1_chr4_+_48137778_48137803	0.00562466	NHLH1,2.p2	AK014718|Stx17|67727|syntaxin 17	AK154503|Stx17|67727|syntaxin 17	NM_026343|Stx17|67727|syntaxin 17	AK011400|Stx17|67727|syntaxin 17	AK135240|Stx17|67727|syntaxin 17	AK018526|Stx17|67727|syntaxin 17	AK034718|Stx17|67727|syntaxin 17	BC028639|Stx17|67727|syntaxin 17
mm9_v1_chr4_-_106472351_106472448	0.00558967	NHLH1,2.p2	AK031588|Acot11|329910|acyl-CoA thioesterase 11	AF416923|Acot11|329910|acyl-CoA thioesterase 11	BC042492|Acot11|329910|acyl-CoA thioesterase 11	AK048670|Acot11|329910|acyl-CoA thioesterase 11	NM_025590|Acot11|329910|acyl-CoA thioesterase 11	AK052332|Acot11|329910|acyl-CoA thioesterase 11
mm9_v1_chr18_+_32416881_32416904	0.00549374	NHLH1,2.p2	BC024446|Ercc3|13872|excision repair cross-complementing rodent repair deficiency, complementation group 3
mm9_v1_chr6_+_122258946_122259119	0.00543947	NHLH1,2.p2	AK153302|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK151607|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK149177|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153474|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK004656|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK145913|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK153140|M6pr|17113|mannose-6-phosphate receptor, cation dependent	AK133943|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X64068|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC046956|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC080811|M6pr|17113|mannose-6-phosphate receptor, cation dependent	NM_010749|M6pr|17113|mannose-6-phosphate receptor, cation dependent	BC027210|M6pr|17113|mannose-6-phosphate receptor, cation dependent	X56831|M6pr|17113|mannose-6-phosphate receptor, cation dependent	M63286|M6pr|17113|mannose-6-phosphate receptor, cation dependent
mm9_v1_chr15_-_76552594_76552602	0.00537567	NHLH1,2.p2	AK048678|Lrrc24|378937|leucine rich repeat containing 24	AK078176|Lrrc24|378937|leucine rich repeat containing 24	NM_198119|Lrrc24|378937|leucine rich repeat containing 24
mm9_v1_chr3_+_102799635_102799652	0.00534513	NHLH1,2.p2	AK035590|Sike1|66641|suppressor of IKBKE 1
mm9_v1_chr15_-_77137425_77137482	0.00533672	NHLH1,2.p2	AK139555|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_001110827|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_053104|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2	NM_175387|Rbfox2|93686|RNA binding protein, fox-1 homolog (C. elegans) 2
mm9_v1_chr19_+_5647822_5648036	0.0053157	NHLH1,2.p2	AK202240|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)	AK203832|Rela|19697|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm9_v1_chr19_-_4007587_4007601	0.00524862	NHLH1,2.p2	
mm9_v1_chr16_+_10742336_10742473	0.00507173	NHLH1,2.p2	AK028051|Clec16a|74374|C-type lectin domain family 16, member A
mm9_v1_chr7_+_16701811_16702117	0.00504748	NHLH1,2.p2	AK078019|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK215640|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK198211|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha	AK199113|Napa|108124|N-ethylmaleimide sensitive fusion protein attachment protein alpha
mm9_v1_chr17_+_56724423_56724443	0.0049394	NHLH1,2.p2	BC018200|Safb|224903|scaffold attachment factor B
mm9_v1_chr8_+_4238862_4238907	0.00486602	NHLH1,2.p2	AB005654|Map2k7|26400|mitogen-activated protein kinase kinase 7	AK028772|Map2k7|26400|mitogen-activated protein kinase kinase 7	U74463|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr7_+_4828628_4828654	0.00473506	NHLH1,2.p2	NM_001101598|Isoc2a|664994|isochorismatase domain containing 2a
mm9_v1_chr15_+_38837839_38837957	0.00465116	NHLH1,2.p2	NM_008056|Fzd6|14368|frizzled homolog 6 (Drosophila)	BC026150|Fzd6|14368|frizzled homolog 6 (Drosophila)	AK088399|Fzd6|14368|frizzled homolog 6 (Drosophila)
mm9_v1_chr11_-_68635236_68635451	0.00461027	NHLH1,2.p2	AK194070|Ndel1|83431|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm9_v1_chr6_+_49023793_49023864	0.00459484	NHLH1,2.p2	NM_029353|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene	AK031878|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene	AK153503|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene	AK010366|2410003K15Rik|75593|RIKEN cDNA 2410003K15 gene
mm9_v1_chr13_+_9093121_9093197	0.00456656	NHLH1,2.p2	AK080953|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK160759|Larp4b|217980|La ribonucleoprotein domain family, member 4B	NM_172585|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK042491|Larp4b|217980|La ribonucleoprotein domain family, member 4B	AK172916|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC059218|Larp4b|217980|La ribonucleoprotein domain family, member 4B	BC086626|Larp4b|217980|La ribonucleoprotein domain family, member 4B
mm9_v1_chr14_-_21871345_21871395	0.00455958	NHLH1,2.p2	BC024595|Ap3m1|55946|adaptor-related protein complex 3, mu 1 subunit
mm9_v1_chr19_-_3897557_3897679	0.00454997	NHLH1,2.p2	
mm9_v1_chr2_+_54288789_54288827	0.00450111	NHLH1,2.p2	AK035964|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK030726|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK038387|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	AK045417|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	NM_173030|Galnt13|271786|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
mm9_v1_chr10_+_80720062_80720086	0.00448707	NHLH1,2.p2	X89723|Matk|17179|megakaryocyte-associated tyrosine kinase	BC060086|Matk|17179|megakaryocyte-associated tyrosine kinase
mm9_v1_chr19_+_7457020_7457026	0.00445318	NHLH1,2.p2	AK018939|1700105P06Rik|654802|RIKEN cDNA 1700105P06 gene
mm9_v1_chr17_+_30713483_30713498	0.00427818	NHLH1,2.p2	AK006324|0710001D07Rik|67679|RIKEN cDNA 0710001D07 gene
mm9_v1_chr7_+_24866915_24866972	0.00424141	NHLH1,2.p2	AK144892|Zfp180|210135|zinc finger protein 180	AK083802|Zfp180|210135|zinc finger protein 180	BC085472|Zfp180|210135|zinc finger protein 180	AK145004|Zfp180|210135|zinc finger protein 180	BC066115|Zfp180|210135|zinc finger protein 180	AK141922|Zfp180|210135|zinc finger protein 180	NM_001045486|Zfp180|210135|zinc finger protein 180	AK154182|Zfp180|210135|zinc finger protein 180	BC063741|Zfp180|210135|zinc finger protein 180
mm9_v1_chr4_+_32702401_32702487	0.00422162	NHLH1,2.p2	AK165109|Casp8ap2|26885|caspase 8 associated protein 2	NM_001122978|Casp8ap2|26885|caspase 8 associated protein 2	NM_011997|Casp8ap2|26885|caspase 8 associated protein 2	AK142148|Casp8ap2|26885|caspase 8 associated protein 2	AF132726|Casp8ap2|26885|caspase 8 associated protein 2
mm9_v1_chr8_+_15032567_15032716	0.00419269	NHLH1,2.p2	BC049667|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11	BC038875|Kbtbd11|74901|kelch repeat and BTB (POZ) domain containing 11
mm9_v1_chr11_-_33413715_33413767	0.0041028	NHLH1,2.p2	NM_023146|Ranbp17|66011|RAN binding protein 17
mm9_v1_chr17_-_46811556_46811599	0.00410244	NHLH1,2.p2	
mm9_v1_chr18_+_78012766_78012832	0.00409605	NHLH1,2.p2	AK218124|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr12_-_103213890_103213953	0.00408245	NHLH1,2.p2	AK156663|Gm2701|100040305|predicted gene 2701
mm9_v1_chr4_-_43441988_43442007	0.00400965	NHLH1,2.p2	BC172030|Fam166b|329831|family with sequence similarity 166, member B	AK029435|Fam166b|329831|family with sequence similarity 166, member B	AK053208|Fam166b|329831|family with sequence similarity 166, member B	NM_001162381|Fam166b|329831|family with sequence similarity 166, member B	NM_177377|Fam166b|329831|family with sequence similarity 166, member B
mm9_v1_chr9_-_103118185_103118198	0.00390549	NHLH1,2.p2	M23016|Trf|22041|transferrin
mm9_v1_chr11_+_72261092_72261109	0.00387792	NHLH1,2.p2	AK204284|Mybbp1a|18432|MYB binding protein (P160) 1a	AK219784|Mybbp1a|18432|MYB binding protein (P160) 1a
mm9_v1_chr8_+_85689973_85690078	0.00381579	NHLH1,2.p2	AK134614|Tbc1d9|71310|TBC1 domain family, member 9	AK173050|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr11_-_96680500_96680758	0.00380499	NHLH1,2.p2	AK201733|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1	BC022152|Nfe2l1|18023|nuclear factor, erythroid derived 2,-like 1
mm9_v1_chr11_+_119138207_119138252	0.00376697	NHLH1,2.p2	AK215770|Gaa|14387|glucosidase, alpha, acid
mm9_v1_chr2_+_131036131_131036175	0.00375645	NHLH1,2.p2	AK009634|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	AK002807|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	BC048399|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene	NM_027129|2310035K24Rik|69596|RIKEN cDNA 2310035K24 gene
mm9_v1_chr9_-_7932402_7932403	0.00368198	NHLH1,2.p2	AK212471|Yap1|22601|yes-associated protein 1	AK215870|Yap1|22601|yes-associated protein 1
mm9_v1_chr11_-_102266342_102266375	0.0034955	NHLH1,2.p2	AK211485|Slc25a39|68066|solute carrier family 25, member 39
mm9_v1_chr2_+_158235682_158235701	0.00347651	NHLH1,2.p2	BC138377|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)	BC145260|Ralgapb|228850|Ral GTPase activating protein, beta subunit (non-catalytic)
mm9_v1_chr7_-_29959614_29959760	0.00336969	NHLH1,2.p2	AK194690|Psmd8|57296|proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
mm9_v1_chr1_+_87804349_87804399	0.00327675	NHLH1,2.p2	AK206485|Itm2c|64294|integral membrane protein 2C	AK207473|Itm2c|64294|integral membrane protein 2C	AK218160|Itm2c|64294|integral membrane protein 2C
mm9_v1_chr10_-_122633922_122634056	0.00317699	NHLH1,2.p2	L10903|Usp15|14479|ubiquitin specific peptidase 15	AF468037|Usp15|14479|ubiquitin specific peptidase 15	AK145749|Usp15|14479|ubiquitin specific peptidase 15	NM_027604|Usp15|14479|ubiquitin specific peptidase 15	AK046332|Usp15|14479|ubiquitin specific peptidase 15	AK083303|Usp15|14479|ubiquitin specific peptidase 15	AK133852|Usp15|14479|ubiquitin specific peptidase 15	AK122301|Usp15|14479|ubiquitin specific peptidase 15	BC050042|Usp15|14479|ubiquitin specific peptidase 15	AK164382|Usp15|14479|ubiquitin specific peptidase 15	AK163315|Usp15|14479|ubiquitin specific peptidase 15	AK168755|Usp15|14479|ubiquitin specific peptidase 15	AK161469|Usp15|14479|ubiquitin specific peptidase 15	AK161957|Usp15|14479|ubiquitin specific peptidase 15	AK163284|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr11_+_70027581_70027626	0.00312637	NHLH1,2.p2	AB041591|Slc16a11|216867|solute carrier family 16 (monocarboxylic acid transporters), member 11
mm9_v1_chr4_-_129301106_129301154	0.00312447	NHLH1,2.p2	AK003287|Ccdc28b|66264|coiled coil domain containing 28B	AK028262|Ccdc28b|66264|coiled coil domain containing 28B	BC028873|Ccdc28b|66264|coiled coil domain containing 28B	NM_025455|Ccdc28b|66264|coiled coil domain containing 28B	AK158016|Ccdc28b|66264|coiled coil domain containing 28B
mm9_v1_chr6_-_113293879_113293979	0.0031217	NHLH1,2.p2	AK089742|Camk1|52163|calcium/calmodulin-dependent protein kinase I	AK170188|Camk1|52163|calcium/calmodulin-dependent protein kinase I	BC014825|Camk1|52163|calcium/calmodulin-dependent protein kinase I	NM_133926|Camk1|52163|calcium/calmodulin-dependent protein kinase I	AK134936|Camk1|52163|calcium/calmodulin-dependent protein kinase I
mm9_v1_chr6_-_97129076_97129149	0.00307023	NHLH1,2.p2	AK144898|Tmf1|232286|TATA element modulatory factor 1	AK144729|Tmf1|232286|TATA element modulatory factor 1	BC150931|Tmf1|232286|TATA element modulatory factor 1	NM_001081111|Tmf1|232286|TATA element modulatory factor 1
mm9_v1_chr10_+_127848744_127848813	0.00302943	NHLH1,2.p2	AK031657|Rnf41|67588|ring finger protein 41	AK034551|Rnf41|67588|ring finger protein 41	AK044103|Rnf41|67588|ring finger protein 41	AK032848|Rnf41|67588|ring finger protein 41	AK028551|Rnf41|67588|ring finger protein 41	AK077466|Rnf41|67588|ring finger protein 41
mm9_v1_chr11_-_59041663_59041762	0.00298287	NHLH1,2.p2	NM_001130408|Arf1|11840|ADP-ribosylation factor 1	AK152479|Arf1|11840|ADP-ribosylation factor 1	BC021403|Arf1|11840|ADP-ribosylation factor 1	AK170586|Arf1|11840|ADP-ribosylation factor 1	AK151696|Arf1|11840|ADP-ribosylation factor 1	AK168081|Arf1|11840|ADP-ribosylation factor 1	AK167000|Arf1|11840|ADP-ribosylation factor 1	AK151821|Arf1|11840|ADP-ribosylation factor 1	AK152382|Arf1|11840|ADP-ribosylation factor 1	AK152015|Arf1|11840|ADP-ribosylation factor 1	AK167543|Arf1|11840|ADP-ribosylation factor 1	AK169166|Arf1|11840|ADP-ribosylation factor 1	D87898|Arf1|11840|ADP-ribosylation factor 1	AK170092|Arf1|11840|ADP-ribosylation factor 1	AK077542|Arf1|11840|ADP-ribosylation factor 1	AK150699|Arf1|11840|ADP-ribosylation factor 1	AK151223|Arf1|11840|ADP-ribosylation factor 1	AK159174|Arf1|11840|ADP-ribosylation factor 1	AK166628|Arf1|11840|ADP-ribosylation factor 1	AK168686|Arf1|11840|ADP-ribosylation factor 1	AK148873|Arf1|11840|ADP-ribosylation factor 1	AK167931|Arf1|11840|ADP-ribosylation factor 1	AK148458|Arf1|11840|ADP-ribosylation factor 1	AK167129|Arf1|11840|ADP-ribosylation factor 1	AK153132|Arf1|11840|ADP-ribosylation factor 1	AK150092|Arf1|11840|ADP-ribosylation factor 1	AK151225|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr8_-_122333845_122333958	0.00294438	NHLH1,2.p2	
mm9_v1_chr10_-_94877824_94877916	0.00292729	NHLH1,2.p2	U88327|Socs2|216233|suppressor of cytokine signaling 2	NM_001168657|Socs2|216233|suppressor of cytokine signaling 2
mm9_v1_chr15_-_44946248_44946315	0.0028744	NHLH1,2.p2	AK076120|Kcnv1|67498|potassium channel, subfamily V, member 1	AK012275|Kcnv1|67498|potassium channel, subfamily V, member 1	AK139482|Kcnv1|67498|potassium channel, subfamily V, member 1
mm9_v1_chr15_+_73253740_73253763	0.00280838	NHLH1,2.p2	AK078348|LOC497255|497255|hypothetical LOC497255
mm9_v1_chrX_+_7419623_7419812	0.00279527	NHLH1,2.p2	AK167226|Otud5|54644|OTU domain containing 5	AF229642|Otud5|54644|OTU domain containing 5
mm9_v1_chr1_+_184054867_184055092	0.00273787	NHLH1,2.p2	NM_012058|Srp9|27058|signal recognition particle 9	BC039648|Srp9|27058|signal recognition particle 9	AK003606|Srp9|27058|signal recognition particle 9	AK020583|Srp9|27058|signal recognition particle 9	AK146882|Srp9|27058|signal recognition particle 9	AK051208|Srp9|27058|signal recognition particle 9	AK169314|Srp9|27058|signal recognition particle 9	AK020620|Srp9|27058|signal recognition particle 9	AK011720|Srp9|27058|signal recognition particle 9	BC090254|Srp9|27058|signal recognition particle 9	X78304|Srp9|27058|signal recognition particle 9
mm9_v1_chr12_-_21423296_21423379	0.00271026	NHLH1,2.p2	BC090838|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	NM_011739|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	BC110680|Ywhaq|22630|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm9_v1_chr1_+_74438416_74438473	0.00267292	NHLH1,2.p2	AK167390|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC065158|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	BC079638|Ctdsp1|227292|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
mm9_v1_chr4_-_102887390_102887488	0.00266145	NHLH1,2.p2	AK169775|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK220330|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049462|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK052968|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	AK049180|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	BC115984|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	NM_177732|Slc35d1|242585|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm9_v1_chr8_+_85689250_85689250	0.00258403	NHLH1,2.p2	AK049049|Tbc1d9|71310|TBC1 domain family, member 9	NM_001111304|Tbc1d9|71310|TBC1 domain family, member 9	NM_027758|Tbc1d9|71310|TBC1 domain family, member 9
mm9_v1_chr7_+_48154647_48154658	0.00255617	NHLH1,2.p2	AB030198|Vstm2b|58188|V-set and transmembrane domain containing 2B	NM_021387|Vstm2b|58188|V-set and transmembrane domain containing 2B	AK013845|Vstm2b|58188|V-set and transmembrane domain containing 2B
mm9_v1_chr7_-_133942767_133942800	0.0024908	NHLH1,2.p2	NM_007438|Aldoa|11674|aldolase A, fructose-bisphosphate
mm9_v1_chr7_+_150293158_150293455	0.0023361	NHLH1,2.p2	BC045142|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	NM_008434|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	AK154244|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	BC055304|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	AY331142|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	U70068|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1	AB079603|Kcnq1|16535|potassium voltage-gated channel, subfamily Q, member 1
mm9_v1_chr1_-_170362388_170362504	0.00232426	NHLH1,2.p2	NM_008783|Pbx1|18514|pre B-cell leukemia transcription factor 1	NM_183355|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr16_-_4523061_4523074	0.002323	NHLH1,2.p2	AK036394|Srl|106393|sarcalumenin	BC145687|Srl|106393|sarcalumenin
mm9_v1_chr1_-_181682859_181682906	0.00230474	NHLH1,2.p2	AK016646|Ahctf1|226747|AT hook containing transcription factor 1
mm9_v1_chr1_-_24107142_24107222	0.00228592	NHLH1,2.p2	AK149303|Fam135a|68187|family with sequence similarity 135, member A	AK165306|Fam135a|68187|family with sequence similarity 135, member A	NM_026604|Fam135a|68187|family with sequence similarity 135, member A
mm9_v1_chr8_+_73054891_73055139	0.00225811	NHLH1,2.p2	AK177460|Fkbp8|14232|FK506 binding protein 8	AK184741|Fkbp8|14232|FK506 binding protein 8	AK182349|Fkbp8|14232|FK506 binding protein 8	AK197324|Fkbp8|14232|FK506 binding protein 8	AK209719|Fkbp8|14232|FK506 binding protein 8	AK212094|Fkbp8|14232|FK506 binding protein 8
mm9_v1_chr8_-_107819839_107819997	0.00225339	NHLH1,2.p2	AK172618|Exoc3l|277978|exocyst complex component 3-like	BC094238|Exoc3l|277978|exocyst complex component 3-like	AK050100|Exoc3l|277978|exocyst complex component 3-like	NM_177788|Exoc3l|277978|exocyst complex component 3-like
mm9_v1_chr7_+_24897332_24897378	0.00223803	NHLH1,2.p2	AF167319|Zfp112|57745|zinc finger protein 112	NM_021307|Zfp112|57745|zinc finger protein 112	BC120886|Zfp112|57745|zinc finger protein 112
mm9_v1_chr8_-_114045885_114045888	0.0021816	NHLH1,2.p2	AK030644|Wdr59|319481|WD repeat domain 59
mm9_v1_chr13_+_3537514_3537611	0.00215465	NHLH1,2.p2	L36314|Gdi2|14569|guanosine diphosphate (GDP) dissociation inhibitor 2
mm9_v1_chr11_-_83882063_83882095	0.00213398	NHLH1,2.p2	AK166840|Dusp14|56405|dual specificity phosphatase 14	BC052836|Dusp14|56405|dual specificity phosphatase 14
mm9_v1_chr2_+_23012016_23012208	0.00206552	NHLH1,2.p2	AK032273|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AK045141|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AF090430|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AY136287|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	BC007128|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AK079175|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	NM_013771|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AK137665|Yme1l1|27377|YME1-like 1 (S. cerevisiae)	AY136286|Yme1l1|27377|YME1-like 1 (S. cerevisiae)
mm9_v1_chr15_+_81742665_81742704	0.00198932	NHLH1,2.p2	AK182718|Aco2|11429|aconitase 2, mitochondrial	AK220091|Aco2|11429|aconitase 2, mitochondrial
mm9_v1_chr10_+_80289364_80289423	0.00198656	NHLH1,2.p2	NM_008753|Oaz1|18245|ornithine decarboxylase antizyme 1
mm9_v1_chr12_+_88614091_88614155	0.00193844	NHLH1,2.p2	AK191114|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK177365|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)	AK182129|Ahsa1|217737|AHA1, activator of heat shock protein ATPase homolog 1 (yeast)
mm9_v1_chr15_-_79635138_79635146	0.00183407	NHLH1,2.p2	BC058962|Nptxr|73340|neuronal pentraxin receptor	BC098199|Nptxr|73340|neuronal pentraxin receptor	NM_030689|Nptxr|73340|neuronal pentraxin receptor	AK147605|Nptxr|73340|neuronal pentraxin receptor
mm9_v1_chr1_+_180459245_180459259	0.00183247	NHLH1,2.p2	AB355846|Kif26b|269152|kinesin family member 26B	AK052046|Kif26b|269152|kinesin family member 26B	NM_001161665|Kif26b|269152|kinesin family member 26B
mm9_v1_chr7_-_35015297_35015308	0.00179052	NHLH1,2.p2	BC086640|Gpi1|14751|glucose phosphate isomerase 1
mm9_v1_chr15_-_3533122_3533246	0.00178227	NHLH1,2.p2	AK143925|Ghr|14600|growth hormone receptor	BC056645|Ghr|14600|growth hormone receptor	BC024375|Ghr|14600|growth hormone receptor	BC075720|Ghr|14600|growth hormone receptor	AK053579|Ghr|14600|growth hormone receptor	NM_001048178|Ghr|14600|growth hormone receptor	NM_010284|Ghr|14600|growth hormone receptor
mm9_v1_chr16_+_23609986_23610176	0.00175609	NHLH1,2.p2	NM_023386|Rtp4|67775|receptor transporter protein 4	AK018021|Rtp4|67775|receptor transporter protein 4	AJ251364|Rtp4|67775|receptor transporter protein 4	AK007477|Rtp4|67775|receptor transporter protein 4	BC024872|Rtp4|67775|receptor transporter protein 4	AY562228|Rtp4|67775|receptor transporter protein 4
mm9_v1_chr6_+_125299717_125299857	0.00170248	NHLH1,2.p2	NM_011609|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	AK154388|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	L26349|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	X57796|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	BC096429|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	AK159989|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	BC052675|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	BC004599|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	M60468|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a	X59238|Tnfrsf1a|21937|tumor necrosis factor receptor superfamily, member 1a
mm9_v1_chr14_+_49791899_49792002	0.00163044	NHLH1,2.p2	NM_001081430|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	AK015640|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC157931|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC158065|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit	BC172029|Naa30|70646|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm9_v1_chr5_-_136410216_136410278	0.0015933	NHLH1,2.p2	AK183704|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	CT010208|Ywhag|22628|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm9_v1_chr17_+_46298055_46298112	0.00151503	NHLH1,2.p2	AK148020|Gtpbp2|56055|GTP binding protein 2	AK087511|Gtpbp2|56055|GTP binding protein 2	AF168991|Gtpbp2|56055|GTP binding protein 2	AK008731|Gtpbp2|56055|GTP binding protein 2
mm9_v1_chrX_+_71415963_71415984	0.00144437	NHLH1,2.p2	
mm9_v1_chr5_-_122022045_122022119	0.00136903	NHLH1,2.p2	AK207282|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK209308|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK214596|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK216794|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial	AK206041|Aldh2|11669|aldehyde dehydrogenase 2, mitochondrial
mm9_v1_chr2_+_155207542_155207579	0.00135292	NHLH1,2.p2	AK170132|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr10_-_80830149_80830160	0.00128123	NHLH1,2.p2	
mm9_v1_chr15_+_85662733_85662783	0.0012623	NHLH1,2.p2	NM_001033337|Ttc38|239570|tetratricopeptide repeat domain 38	BC132621|Ttc38|239570|tetratricopeptide repeat domain 38	BC132623|Ttc38|239570|tetratricopeptide repeat domain 38	BC030849|Ttc38|239570|tetratricopeptide repeat domain 38	AK078848|Ttc38|239570|tetratricopeptide repeat domain 38	AK133636|Ttc38|239570|tetratricopeptide repeat domain 38	BC024550|Ttc38|239570|tetratricopeptide repeat domain 38
mm9_v1_chr17_-_30729995_30730086	0.00124146	NHLH1,2.p2	
mm9_v1_chr9_+_21807887_21807962	0.00123976	NHLH1,2.p2	AK203731|Prkcsh|19089|protein kinase C substrate 80K-H
mm9_v1_chr5_-_96590773_96590783	0.00121172	NHLH1,2.p2	AK030112|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like	NM_178854|Cnot6l|231464|CCR4-NOT transcription complex, subunit 6-like
mm9_v1_chr17_-_46804730_46804875	0.00115614	NHLH1,2.p2	
mm9_v1_chr11_-_120685860_120685860	0.00111412	NHLH1,2.p2	NM_007988|Fasn|14104|fatty acid synthase
mm9_v1_chr16_+_91689120_91689156	0.00111372	NHLH1,2.p2	AK160609|Gm10785|100038392|predicted gene 10785	AK038992|Gm10785|100038392|predicted gene 10785
mm9_v1_chr11_-_118109789_118109956	0.00106383	NHLH1,2.p2	BC057974|Cyth1|19157|cytohesin 1	AK078502|Cyth1|19157|cytohesin 1	AB013464|Cyth1|19157|cytohesin 1	AK220302|Cyth1|19157|cytohesin 1	AK172296|Cyth1|19157|cytohesin 1	AB035538|Cyth1|19157|cytohesin 1	AY126516|Cyth1|19157|cytohesin 1	NM_001112699|Cyth1|19157|cytohesin 1	NM_011180|Cyth1|19157|cytohesin 1
mm9_v1_chr1_+_173319048_173319419	0.00103374	NHLH1,2.p2	AK147757|Arhgap30|226652|Rho GTPase activating protein 30	NM_001005508|Arhgap30|226652|Rho GTPase activating protein 30	AK156351|Arhgap30|226652|Rho GTPase activating protein 30	AK030911|Arhgap30|226652|Rho GTPase activating protein 30	BC082573|Arhgap30|226652|Rho GTPase activating protein 30	AK031319|Arhgap30|226652|Rho GTPase activating protein 30
mm9_v1_chr13_+_90229271_90229367	0.000888381	NHLH1,2.p2	NM_025335|Tmem167|66074|transmembrane protein 167	AK021263|Tmem167|66074|transmembrane protein 167	AK032474|Tmem167|66074|transmembrane protein 167	AK161037|Tmem167|66074|transmembrane protein 167	AK031706|Tmem167|66074|transmembrane protein 167	AK007966|Tmem167|66074|transmembrane protein 167	AK019962|Tmem167|66074|transmembrane protein 167	AK016036|Tmem167|66074|transmembrane protein 167	AK012161|Tmem167|66074|transmembrane protein 167	AK002884|Tmem167|66074|transmembrane protein 167	AK088895|Tmem167|66074|transmembrane protein 167	AK160704|Tmem167|66074|transmembrane protein 167	AK007771|Tmem167|66074|transmembrane protein 167	AK132361|Tmem167|66074|transmembrane protein 167	BC085489|Tmem167|66074|transmembrane protein 167
mm9_v1_chr14_-_56300568_56300659	0.000867362	NHLH1,2.p2	BC030347|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK144592|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK016456|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AF518764|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK090324|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK028952|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AK011154|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	BC017142|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	AF214013|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2	NM_145705|Tinf2|28113|Terf1 (TRF1)-interacting nuclear factor 2
mm9_v1_chr9_+_108849434_108849501	0.000828244	NHLH1,2.p2	BC018405|Uqcrc1|22273|ubiquinol-cytochrome c reductase core protein 1
mm9_v1_chr2_+_151822270_151822363	0.000816844	NHLH1,2.p2	AK029091|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK170158|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene	AK009850|2310046K01Rik|69698|RIKEN cDNA 2310046K01 gene
mm9_v1_chr6_+_124365218_124365248	0.00078172	NHLH1,2.p2	AK085835|D830015G05Rik|319614|RIKEN cDNA D830015G05 gene	AK031810|D830015G05Rik|319614|RIKEN cDNA D830015G05 gene
mm9_v1_chr1_-_186696546_186696657	0.000774054	NHLH1,2.p2	BC129956|C130074G19Rik|226777|RIKEN cDNA C130074G19 gene
mm9_v1_chr8_+_4238718_4238771	0.000771429	NHLH1,2.p2	NM_001042557|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_001164172|Map2k7|26400|mitogen-activated protein kinase kinase 7	NM_011944|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022112|Map2k7|26400|mitogen-activated protein kinase kinase 7	AF022113|Map2k7|26400|mitogen-activated protein kinase kinase 7
mm9_v1_chr16_-_18248659_18248687	0.00069668	NHLH1,2.p2	L25255|Ranbp1|19385|RAN binding protein 1
mm9_v1_chr3_-_88636411_88636470	0.000626761	NHLH1,2.p2	AK141588|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene	AK014401|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene	AK033977|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene	AK078122|1500004A13Rik|319830|RIKEN cDNA 1500004A13 gene
mm9_v1_chr5_+_122162033_122162082	0.000607915	NHLH1,2.p2	U70670|Atxn2|20239|ataxin 2
mm9_v1_chr12_+_33638809_33638809	0.000598248	NHLH1,2.p2	BC060971|Sypl|19027|synaptophysin-like protein	NM_013635|Sypl|19027|synaptophysin-like protein
mm9_v1_chr5_+_140981590_140981602	0.000498053	NHLH1,2.p2	AK163588|Chst12|59031|carbohydrate sulfotransferase 12	AK170484|Chst12|59031|carbohydrate sulfotransferase 12	AK171208|Chst12|59031|carbohydrate sulfotransferase 12
mm9_v1_chr2_+_105744791_105744850	0.000366307	NHLH1,2.p2	AK005356|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011278|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	NM_028260|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011382|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK078300|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011466|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK015978|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011618|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011872|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK011420|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK135670|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK009570|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK010075|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK012181|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	AK168202|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	BC008259|Immp1l|66541|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
mm9_v1_chr2_-_168478155_168478229	0.000328627	NHLH1,2.p2	AK203030|Atp9a|11981|ATPase, class II, type 9A
mm9_v1_chr1_-_25886551_25886551	0.000318194	NHLH1,2.p2	BC099951|Bai3|210933|brain-specific angiogenesis inhibitor 3	NM_175642|Bai3|210933|brain-specific angiogenesis inhibitor 3
mm9_v1_chr7_-_48648629_48648748	0.000307297	NHLH1,2.p2	BC052842|AI987944|233168|expressed sequence AI987944	BC138015|AI987944|233168|expressed sequence AI987944	NM_183167|AI987944|233168|expressed sequence AI987944	BC036560|AI987944|233168|expressed sequence AI987944	BC099396|AI987944|233168|expressed sequence AI987944
mm9_v1_chr11_+_106889431_106889676	0.000303254	NHLH1,2.p2	AK007422|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene	NM_001163473|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene	BC124997|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene	BC125006|1810010H24Rik|69066|RIKEN cDNA 1810010H24 gene
mm9_v1_chr4_+_154932761_154932805	0.000302992	NHLH1,2.p2	AK194739|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK203879|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1	AK205062|Gnb1|14688|guanine nucleotide binding protein (G protein), beta 1
mm9_v1_chr6_-_38826156_38826247	0.000239075	NHLH1,2.p2	NM_010433|Hipk2|15258|homeodomain interacting protein kinase 2
mm9_v1_chr1_-_9690289_9690338	0.000210663	NHLH1,2.p2	L35261|Mybl1|17864|myeloblastosis oncogene-like 1	NM_008651|Mybl1|17864|myeloblastosis oncogene-like 1
mm9_v1_chr9_-_7872896_7873169	0.000204441	NHLH1,2.p2	AK172636|Birc3|11796|baculoviral IAP repeat-containing 3	BC011338|Birc3|11796|baculoviral IAP repeat-containing 3	U88908|Birc3|11796|baculoviral IAP repeat-containing 3	AK162108|Birc3|11796|baculoviral IAP repeat-containing 3	NM_007464|Birc3|11796|baculoviral IAP repeat-containing 3
mm9_v1_chr14_-_77436363_77436492	0.000179826	NHLH1,2.p2	AK152154|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK033565|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	NM_172488|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene	AK153349|9030625A04Rik|210808|RIKEN cDNA 9030625A04 gene
mm9_v1_chr10_+_36694535_36694557	6.22354e-05	NHLH1,2.p2	AB221663|Hdac2|15182|histone deacetylase 2
mm9_v1_chr16_-_17842060_17842142	1.04963e-05	NHLH1,2.p2	AK183515|Dgcr2|13356|DiGeorge syndrome critical region gene 2
mm9_v1_chr17_-_66234064_66234193	1.04341e-05	NHLH1,2.p2	AK019116|Ralbp1|19765|ralA binding protein 1	AK159404|Ralbp1|19765|ralA binding protein 1	X80937|Ralbp1|19765|ralA binding protein 1	BC054329|Ralbp1|19765|ralA binding protein 1	BC076636|Ralbp1|19765|ralA binding protein 1
mm9_v1_chr4_-_117807482_117807555	5.07217e-06	NHLH1,2.p2	AK013016|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK005053|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_009176|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	AK136442|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	BC006710|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3	NM_001161774|St3gal3|20441|ST3 beta-galactoside alpha-2,3-sialyltransferase 3
